BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005531
(692 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1
Length = 947
Score = 1101 bits (2848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/692 (77%), Positives = 599/692 (86%), Gaps = 7/692 (1%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAFYRWLADRYP SI DVVEE+P G G PVD+++PNPNG EFDNLYLDMNGII
Sbjct: 1 MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGII 60
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPCFHP+GKPAP +YDDVFKS+F+YIDH+F LVRPRK+LYLAIDGVAPRAKMNQQR+RRF
Sbjct: 61 HPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRF 120
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
RAAKDAAEAEAEEERLRK+FE G++LSAKEK ETCDSNVITPGT FMA+LS ALQY+IQ
Sbjct: 121 RAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGTPFMAILSVALQYYIQ 180
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
+RLN PGW++ KVILSD+NVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
Sbjct: 181 SRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKK 300
SLATHE+HFSILREVIT PGQQEKCFVCGQ GH A++C GK G N N D PIHKK
Sbjct: 241 SLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSN----NAAADIPIHKK 296
Query: 301 KYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA 360
KYQFLNIWVLREYLQYEL IP+PPF INFERI+DDFVFLCFFVGNDFLPHMPTLEIREGA
Sbjct: 297 KYQFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGA 356
Query: 361 INLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNEA 420
INLLMHVYR+EFTAMGGYLTD+GEVLLDRVE FIQ+VAV ED+IFQKRTRI+Q+ + NE
Sbjct: 357 INLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEE 416
Query: 421 MKLNARRESSEELLQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYV 480
MK +RR+ SE P + D +KLGEPGYKERYYA+KF +NPEE +++K+D+VLKYV
Sbjct: 417 MKQRSRRDPSE---VPPEPIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDMVLKYV 473
Query: 481 EGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPA 540
EGLCWVCRYYYQ VCSWQWFYPYHYAPFASDLK+L DLEITFF+GEPF+PFDQLMGTLPA
Sbjct: 474 EGLCWVCRYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIGEPFKPFDQLMGTLPA 533
Query: 541 ASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKK 600
ASS+ALP +YR LMTDPSSPI KFYP DF++DMNGKRFAWQG+ KLPFI+EKLLL T+K
Sbjct: 534 ASSNALPGEYRKLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRK 593
Query: 601 LEVFLTEEELFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGM 660
LE LT EE RNSVMLDLLYVHP HPL Q+I Y Y +PP + W ID N+S GM
Sbjct: 594 LEETLTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHECLPWMIDPNSSQGM 653
Query: 661 NGYIWLCERNGLRSIIPSPVKGLPDIERNQAM 692
NG++W ERNG ++ + SPV GLP IE+N+A+
Sbjct: 654 NGFLWFSERNGFQTRVDSPVNGLPCIEQNRAL 685
>sp|Q9FQ02|XRN2_ARATH 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1
Length = 1012
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/776 (52%), Positives = 517/776 (66%), Gaps = 87/776 (11%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDP-QVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGI 59
MGVP+FYRWL RYPL+I +V+EE+P +V+G GV P+D SKPNPNG E+DNLYLDMNGI
Sbjct: 1 MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGI 60
Query: 60 IHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRR 119
IHPCFHP+ KP+PT++ +VF+ +FDYID +F++VRPRKLL++AIDGVAPRAKMNQQR RR
Sbjct: 61 IHPCFHPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARR 120
Query: 120 FRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFI 179
FRAAKDAAEA AEEE+LR+EFE GK L K + DSNVITPGT+FMA LS AL+Y+I
Sbjct: 121 FRAAKDAAEAAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGTEFMATLSFALRYYI 180
Query: 180 QARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
RLN PGW+ KVILSDANVPGEGEHKIMSYIR +N PG++PNT HCLYGLDADLIM
Sbjct: 181 HVRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIM 240
Query: 240 LSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADW-NGVDDTPIH 298
LSLATHEIHFSILREV+ PG++ KCF+CGQ GH AA+C GK + + + +
Sbjct: 241 LSLATHEIHFSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVV 300
Query: 299 KKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIRE 358
KK Y+F+NIW+LREYL++++ IP N +R++DDF+F+CFFVGNDFLPHMPTLEIRE
Sbjct: 301 KKPYEFVNIWILREYLEHDMQIPGA--KKNLDRLIDDFIFICFFVGNDFLPHMPTLEIRE 358
Query: 359 GAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAY--- 415
GAI LLM VY+ +F + YLTD+ ++ L VE+FI++V +YE+QIFQKR ++QQ
Sbjct: 359 GAIELLMSVYKNKFRSAKKYLTDSSKLNLRNVERFIKAVGMYENQIFQKRAQVQQRQSER 418
Query: 416 ----EYNEAMKLNAR------RESSEELLQ------------------------------ 435
+ + + NAR R+ S +L+Q
Sbjct: 419 FRRDKARDKARDNARDNAQASRQFSGKLVQLDSLDEVSDSLHSSPSRKYLRLSLDDNIGV 478
Query: 436 APVAVADTVKLGEPGYKE----------RYYADKFEISNPEEIDKVKKDVV--------- 476
A V +++K E +E R D F N E+ DKVK + V
Sbjct: 479 ANVETENSLKAEELDNEEDLKFKLKKLLRDKGDGFRSGNGEQ-DKVKLNKVGWRERYYEE 537
Query: 477 ------------------LKYVEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDL 518
LKY EGLCW+ YYY VCSW WFYPYHYAPFASDLK L L
Sbjct: 538 KFAAKSVEEMEQIRRDVVLKYTEGLCWIMHYYYHGVCSWNWFYPYHYAPFASDLKGLEKL 597
Query: 519 EITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRF 578
+I F LG PF+PF+QL+ LP+AS+ ALPE YR+LMT+P SPI FYP DF+IDMNGKR+
Sbjct: 598 DIKFELGSPFKPFNQLLAVLPSASAHALPECYRSLMTNPDSPIADFYPADFEIDMNGKRY 657
Query: 579 AWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLYVHPQHPLYQQITLYCQL 638
+WQG+ KLPF++EK LL ++E LT EE+ RNS + D+L+V HPL + I
Sbjct: 658 SWQGISKLPFVEEKRLLEAAAQVEKSLTNEEIRRNSALFDMLFVVASHPLGELIRSLNSR 717
Query: 639 YHQLPPQDRFAW--EIDVNASGGMNGYIWLCERNGLRSIIPSPVKGLPDIERNQAM 692
+ L ++R +ID S GMNGYI C + S S V+G+ D+ NQ +
Sbjct: 718 TNNLSNEERATIIEKIDPGLSDGMNGYIASCGGDSQPSCFCSTVEGMEDVLTNQVI 773
>sp|Q9VM71|XRN2_DROME 5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1
PE=1 SV=2
Length = 908
Score = 628 bits (1620), Expect = e-179, Method: Compositional matrix adjust.
Identities = 346/738 (46%), Positives = 451/738 (61%), Gaps = 62/738 (8%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPV--DVSKPNPNGMEFDNLYLDMNG 58
MGVPAF+RWL+ +YP I++ E+ QVD + R + D + PNPNG+EFDNLYLDMNG
Sbjct: 1 MGVPAFFRWLSRKYPSVIIEC-NENKQVDAD-TGRNIYEDPTLPNPNGIEFDNLYLDMNG 58
Query: 59 IIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTR 118
IIHPC HP+ KPAP + D++ +IF+ ID +F +VRPRKLLY+AIDGVAPRAKMNQQR+R
Sbjct: 59 IIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSR 118
Query: 119 RFRAAKDAAEAEAEEERLRKEFEEAG-KLLSAKEKPETCDSNVITPGTQFMAVLSAALQY 177
RFRAAK+ E E R+R+E G KL KEK E DSN ITPGT FM LS L Y
Sbjct: 119 RFRAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHY 178
Query: 178 FIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADL 237
F+ R N P W+ KVILSDANVPGEGEHKIM YIR QR P DPNT+H L G DADL
Sbjct: 179 FVHDRQNNNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADL 238
Query: 238 IMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPI 297
IML LATHE +F+I+RE LP + C +C GH +C G P N D PI
Sbjct: 239 IMLGLATHEPNFTIIREEF-LPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPI 297
Query: 298 HKK-KYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356
+ K+ F+ + VLREYL+ L++PN PF +FER +DD+VF+CFFVGNDFLPH+P+LEI
Sbjct: 298 GAEVKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEI 357
Query: 357 REGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYE 416
REGA++ L+ +Y++ GYLTD+G+V LDRV+ + + EDQIF+ R R ++ ++
Sbjct: 358 REGAVDRLVELYKKCVYKTRGYLTDSGDVNLDRVQLIMTDLGNAEDQIFKSRQRREEQFK 417
Query: 417 -YNEAMKLNARRESSEELLQAPVAVA---------------------------------- 441
++A K R + L Q+ +
Sbjct: 418 ARDKARKRQERNQDHGSLNQSAFGASAVGPNSQQRSVGNYKEEAAALRNRKRTSDMANLD 477
Query: 442 --------DTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQD 493
D V+L E G+K+RYY KF+++ + + + V L+YV GLCWV +YYYQ
Sbjct: 478 DEDEEENNDEVRLWEDGFKDRYYESKFDVAPGNQ--QFRYAVALQYVRGLCWVLKYYYQG 535
Query: 494 VCSWQWFYPYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRN 552
SW W++PYHYAPFASD ++ L F G +PF P +QLMG PAASSS +PE +
Sbjct: 536 CASWNWYFPYHYAPFASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFPAASSSHVPEPWAK 595
Query: 553 LMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFR 612
LM+DP SPI FYP DF+ID+NGK+FAWQGV LPF+DEK L + LT EE+ R
Sbjct: 596 LMSDPESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQLTGEEVKR 655
Query: 613 NSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERN-G 671
N + LY+ Q P Y+++ + + + A D GM G + E N
Sbjct: 656 NKRGDNYLYISNQSPHYKKVKKISEKDDESVCK---AISFD-----GMRGTLGKTELNTA 707
Query: 672 LRSIIPSPVKGLPDIERN 689
+ ++ SP+ GL DI N
Sbjct: 708 ISGVLKSPISGLSDINDN 725
>sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1
Length = 1020
Score = 556 bits (1432), Expect = e-157, Method: Compositional matrix adjust.
Identities = 293/448 (65%), Positives = 356/448 (79%), Gaps = 9/448 (2%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVP+FYRWLA++YPL + DV+EE+ V+ EG+ PVD SKPNPN +E+DNLYLDMNGII
Sbjct: 1 MGVPSFYRWLAEKYPLLVADVIEEE-PVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPCFHP+ +P+PT++++VF+ +FDYID +F++VRPRKLLY+AIDGVAPRAKMNQQR+RRF
Sbjct: 60 HPCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
R+AKDA++A AEEERLR+EFE G+ L K + DSNVITPGT+FM VLS ALQY++
Sbjct: 120 RSAKDASDAAAEEERLREEFEREGRRLPPKVDSQVFDSNVITPGTEFMGVLSIALQYYVH 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN GW+ KVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
Sbjct: 180 LRLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKP----GDNPADWNGVDDTP 296
LATHE+HFSILREV+ PGQQE+CF+CGQ+GH A+ C GKP G++ +G D
Sbjct: 240 GLATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKGDGND--- 296
Query: 297 IHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356
KK YQFL+IWVLREYL+ E+ IPNPPF I+ ERIVDDF+F+CFFVGNDFLPHMPTLEI
Sbjct: 297 FVKKPYQFLHIWVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEI 356
Query: 357 REGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYE 416
REGAINLLM VY++EF + GYLTD + L RVE+FIQ+V +ED+IFQKR +Q +
Sbjct: 357 REGAINLLMAVYKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRA-MQHQRQ 415
Query: 417 YNEAMKLNARRESSEELLQAPVAVADTV 444
+ A + + +AP D V
Sbjct: 416 AERVKRDKAGKATKRMDDEAPTVQPDLV 443
Score = 297 bits (760), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/268 (53%), Positives = 185/268 (69%), Gaps = 3/268 (1%)
Query: 427 RESSEELLQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWV 486
RE S+ + D VKLG+PG++ERYY +KF + PEE+++V+KDVVLKY EGLCWV
Sbjct: 515 REKSD-AFNSDTTEEDKVKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWV 573
Query: 487 CRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSAL 546
YY + VCSWQWFYPYHYAPFASDLKDL +++I F LG PF+PF+QL+G PAASS AL
Sbjct: 574 MHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFKPFNQLLGVFPAASSHAL 633
Query: 547 PEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLT 606
PE+YR LMTDP+SPI FYP DF++DMNGKRF+WQG+ KLPFIDE+ LL ++E LT
Sbjct: 634 PERYRTLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLT 693
Query: 607 EEELFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDR--FAWEIDVNASGGMNGYI 664
+EE RNS M D+L++ H L + + QL ++R F +I S GMNGY+
Sbjct: 694 DEEKRRNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNGYL 753
Query: 665 WLCERNGLRSIIPSPVKGLPDIERNQAM 692
C + SP++G+ DI NQ +
Sbjct: 754 TPCSGETHPPVFRSPMEGMEDILTNQVI 781
>sp|Q9H0D6|XRN2_HUMAN 5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1
Length = 950
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 324/761 (42%), Positives = 434/761 (57%), Gaps = 79/761 (10%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+RRF
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
RA+K+ EA E++R+R+E G L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE +F+I+RE P + + C +C Q GH +C G P + + + D+ P +
Sbjct: 240 GLATHEPNFTIIREEFK-PNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
++ FL + VLREYL+ EL + + PF + ER +DD+VF+CFFVGNDFLPH+P+LEIRE
Sbjct: 299 GEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREN 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNE 419
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + ++ +
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQ 418
Query: 420 AM---------------------KLNARRESSEELLQAPVAVADTVKLGEPGYKERYYAD 458
L +R ++ P A +++
Sbjct: 419 KEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNT 478
Query: 459 KFEI-SNPEEIDKVKK------------DVVLKYVEGLCWVCRYY--------------- 490
F +P + +K+ D V + G W RYY
Sbjct: 479 SFTSDGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAG--WKQRYYKNKFDVDAADEKFRR 536
Query: 491 -----YQDVCSWQWFYPYH-------YAPF-----ASDLKDLSDLEITFFLG-EPFRPFD 532
Y + W Y Y Y PF ASD + ++D+ F G +PF+P +
Sbjct: 537 KVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLE 596
Query: 533 QLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEK 592
QLMG PAAS + LP +R LM+DP S I FYP DF ID+NGK++AWQGV LPF+DE+
Sbjct: 597 QLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDER 656
Query: 593 LLLRQTKKLEVFLTEEELFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEI 652
L +++ LT EE RNS+ D+L+V HPL+ I Q P E+
Sbjct: 657 RLRAALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILELYQTGSTEP------VEV 710
Query: 653 DVNASGGMNGYIWLCERNGL-RSIIPSPVKGLPDIERNQAM 692
G+ G L E L I+ SPV L D+ +N +
Sbjct: 711 PPELCHGIQGKFSLDEEAILPDQIVCSPVPMLRDLTQNTVV 751
>sp|Q5R4L5|XRN2_PONAB 5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1
Length = 950
Score = 548 bits (1412), Expect = e-155, Method: Compositional matrix adjust.
Identities = 325/763 (42%), Positives = 434/763 (56%), Gaps = 83/763 (10%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+RRF
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
RA+K+ EA E++R+R+E G L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE +F+I+RE P + + C +C Q GH +C G + + + D+ P +
Sbjct: 240 GLATHEPNFTIIREEFK-PNKPKPCGLCNQFGHEVKDCEGLLREKKVKHDELADSLPCAE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
++ FL + VLREYL+ EL + + PF + ER +DD+VF+CFFVGNDFLPH+P+LEIRE
Sbjct: 299 GEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREN 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNE 419
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + ++ +
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQ 418
Query: 420 AM---------------------KLNARRESSEELLQAPVAVADTVKLGEPGYKERYYAD 458
L +R ++ P A +++
Sbjct: 419 KEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNT 478
Query: 459 KFEI-SNPEEIDKVKK------------DVVLKYVEGLCWVCRYY--------------- 490
F +P I +K+ D V + G W RYY
Sbjct: 479 SFTSDGSPSPIGGIKRKAEDSDSEPEPEDNVRLWEAG--WKQRYYKNKFDADAADEKFRR 536
Query: 491 -----YQDVCSWQWFYPYH-------YAPF-----ASDLKDLSDLEITFFLG-EPFRPFD 532
Y + W Y Y Y PF ASD + ++D+ F G +PF+P +
Sbjct: 537 KVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLE 596
Query: 533 QLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEK 592
QLMG PAAS + LP +R LM+DP S I FYP DF ID+NGK++AWQGV LPF+DE+
Sbjct: 597 QLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDER 656
Query: 593 LLLRQTKKLEVFLTEEELFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEI 652
L +++ LT EE RNS+ D+L+V HPL+ I Q P +
Sbjct: 657 RLRAALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILELYQTGSTEP--------V 708
Query: 653 DV--NASGGMNGYIWLCERNGL-RSIIPSPVKGLPDIERNQAM 692
DV G+ G L E L I+ SPV L D+ +N +
Sbjct: 709 DVPPELCHGIQGKFSLDEEAILPDQIVCSPVPMLRDLTQNTVV 751
>sp|Q9DBR1|XRN2_MOUSE 5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1
Length = 951
Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/416 (55%), Positives = 298/416 (71%), Gaps = 3/416 (0%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+RRF
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
RA+K+ EA E++R+R+E G L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE +F+I+RE P + + C +C Q GH +C G P + + + D+ P +
Sbjct: 240 GLATHEPNFTIIREEFK-PNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
++ FL + VLREYL+ EL + + PFP + ER +DD+VF+CFFVGNDFLPH+P+LEIREG
Sbjct: 299 GEFIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREG 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAY 415
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + ++
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSF 414
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 154/255 (60%), Gaps = 14/255 (5%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY +KF++ +E K ++ VV YVEGLCWV RYYYQ SW+W+Y
Sbjct: 507 DNVRLWEAGWKQRYYKNKFDVDAADE--KFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY 564
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LM+DP S
Sbjct: 565 PFHYAPFASDFEGIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRKLMSDPDSS 624
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 625 IIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVL 684
Query: 621 YVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDV--NASGGMNGYIWLCERNGL-RSIIP 677
+V HPL I Q P +DV G+ G L E L +
Sbjct: 685 FVGKLHPLRDFILELYQTGSTEP--------VDVPPELCHGIQGTFSLDEEAILPDQTVC 736
Query: 678 SPVKGLPDIERNQAM 692
SPV L D+ +N A+
Sbjct: 737 SPVPMLRDLTQNTAV 751
>sp|Q5ZIP4|XRN2_CHICK 5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1
Length = 949
Score = 462 bits (1189), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 295/409 (72%), Gaps = 3/409 (0%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE + + GV VD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKAK-ECNGVKASVDTSKPNPNEVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ KPAP + D++ +IF+YID IF +VRPR+LLY+AIDGVAPRAKMNQQR+RRF
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
RA+K+ EA E++++R+E G +L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE HF+I+RE P + + C +C Q+GH +C G P + + D+ P +
Sbjct: 240 GLATHEPHFTIIREEFK-PNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPASE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+++ F+ + VLREYL+ EL + + PF +FER VDD+VF+CFFVGNDFLPH+P+LEIREG
Sbjct: 299 QEFIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREG 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKR 408
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKR 407
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/188 (52%), Positives = 130/188 (69%), Gaps = 3/188 (1%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFY 501
D ++L E G+K+RYY +KF++ +E K ++ VV YVEGLCWV RYYYQ SW W+Y
Sbjct: 506 DNIRLWESGWKQRYYKNKFDVDASDE--KFRRKVVQSYVEGLCWVLRYYYQGCASWNWYY 563
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LMTDP S
Sbjct: 564 PFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPPTWRKLMTDPESS 623
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 624 IIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVL 683
Query: 621 YVHPQHPL 628
+V HPL
Sbjct: 684 FVGKHHPL 691
>sp|Q9U299|XRN2_CAEEL 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2
PE=3 SV=2
Length = 975
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/424 (54%), Positives = 293/424 (69%), Gaps = 6/424 (1%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL +YP ++V+ ED Q D +G PVD ++PNPN EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLTKKYPATVVNA-NEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ +PAP + D++F IF+YID I+ +VRPR+LLY+AIDGVAPRAKMNQQR+RRF
Sbjct: 60 HPCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPET-CDSNVITPGTQFMAVLSAALQYFI 179
RA+K+ AE EA E R G + K+K E DSN ITPGT FMA L+ AL+Y+I
Sbjct: 120 RASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYI 179
Query: 180 QARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
R+ W ++ILSDANVPGEGEHKIM Y+R QR P DPNT HCL G DADLIM
Sbjct: 180 HDRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIM 239
Query: 240 LSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHK 299
L +ATHE +F+I+RE +P Q C +CGQ GH EC G +N D P +
Sbjct: 240 LGIATHEANFNIIREEF-VPNQPRACDLCGQYGHELKECRG--AENETDLGDDYCKPEQR 296
Query: 300 KK-YQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIRE 358
+K + FL I VLREYL+ EL +PN PF + ER +DD+VFLCFFVGNDFLPH+P+LEIRE
Sbjct: 297 EKNFIFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIRE 356
Query: 359 GAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYN 418
GAI+ L+ +Y+ M GYLT G LDRVE ++ + ED+IF++R + ++ ++ N
Sbjct: 357 GAIDRLIKLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFKRRQQDEERFQEN 416
Query: 419 EAMK 422
+ K
Sbjct: 417 QRNK 420
Score = 172 bits (437), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 131/220 (59%), Gaps = 11/220 (5%)
Query: 423 LNARRESSEELLQAPV-----AVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVL 477
+ +R+ +E+ L P D ++L E G+K+RYY KF++ + ++I+ + V
Sbjct: 509 IASRKRKAEQPLIKPEEEEDEGPKDDIRLYESGWKDRYYRAKFDVGS-DDIE-FRHRVAW 566
Query: 478 KYVEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFL-GEPFRPFDQLMG 536
YVEGLCWV RYYYQ SW W++PYHYAPFASD + + + + F +PF P +QLM
Sbjct: 567 AYVEGLCWVLRYYYQGCASWDWYFPYHYAPFASDFETVGEFQPDFTRPTKPFNPLEQLMS 626
Query: 537 TLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLR 596
PAAS LP +++ LM SPI YP DF+ID+NGK++AWQGV LPF+DE LL
Sbjct: 627 VFPAASKQHLPVEWQKLMIQDDSPIIDLYPADFRIDLNGKKYAWQGVALLPFVDETRLLA 686
Query: 597 QTKKLEVFLTEEELFRNSVMLDLLYV---HPQHPLYQQIT 633
+ + LT EE RN+ + +++ H +QQ+
Sbjct: 687 TLQSVYPTLTAEEKQRNTRGPNRIFIGRNHKSFEFFQQVA 726
>sp|Q4P149|XRN2_USTMA 5'-3' exoribonuclease 2 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAT1 PE=3 SV=3
Length = 1233
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/453 (49%), Positives = 304/453 (67%), Gaps = 7/453 (1%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQV----DGEGVARPVDVSKPNPNGMEFDNLYLDM 56
MGVPA +RWL+ +YP + V EEDP+ DG + P+D S PNPNG EFD LYLDM
Sbjct: 1 MGVPALFRWLSKKYPRIVSSVQEEDPKTAPGPDGTEITLPLDTSTPNPNGEEFDCLYLDM 60
Query: 57 NGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQR 116
NGI+HPC HP+GKPAP + +++ +F Y + + +VRPR+LL +AIDGVAPRAKMNQQR
Sbjct: 61 NGIVHPCTHPEGKPAPETEEEMMVEVFAYTERVVNMVRPRRLLMMAIDGVAPRAKMNQQR 120
Query: 117 TRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPE--TCDSNVITPGTQFMAVLSAA 174
+RRFRAAK+A E EE+ E++ G + EK DSN ITPGT FM +L+A+
Sbjct: 121 SRRFRAAKEAREKHEEEQAALAEWKAKGLGATDDEKKSKRAWDSNAITPGTPFMDLLAAS 180
Query: 175 LQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLD 234
L+Y++ ++N PGW+ +VI+SDA+VPGEGEHKIM +IR QR+ P DPNT+H +YGLD
Sbjct: 181 LRYWVAQKINSDPGWKDIQVIISDASVPGEGEHKIMEHIRRQRSHPEHDPNTKHVIYGLD 240
Query: 235 ADLIMLSLATHEIHFSILRE-VITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVD 293
ADLIMLSLATHE +F +LRE V + + C +CGQ GH AA C G + +
Sbjct: 241 ADLIMLSLATHEPYFKVLREDVFAADNKPKTCNLCGQPGHFAASCTGAAKKKSGQHDEIA 300
Query: 294 DTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPT 353
TP KK + FL++ LREYL+ EL+IP PF + ER +DD+VFL FFVGNDFLPH+P+
Sbjct: 301 PTPPEKKPFIFLDVATLREYLEVELNIPQLPFAFDLERAIDDWVFLIFFVGNDFLPHLPS 360
Query: 354 LEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQ 413
LEIR+GAI+ L+ ++++E AMGGYLT+ G V L R + + +A ED+IF++R +
Sbjct: 361 LEIRDGAIDTLLRIWKKELPAMGGYLTNHGRVELGRAQLILSGLASEEDEIFRRRKEDED 420
Query: 414 AYEYNEAMKLNARRESSEELLQAPVAVADTVKL 446
E N + ++ +EL Q V++
Sbjct: 421 RRETNRKRREEMQQRRDKELDQGNFGNGSMVEV 453
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFY 501
DTVK+ EPGY+ERYY +KF + + ++ VV Y+EGLCWV YYYQ V SWQW+Y
Sbjct: 661 DTVKMWEPGYRERYYKEKFGVDLSDT--DFRRSVVKSYIEGLCWVLAYYYQGVPSWQWYY 718
Query: 502 PYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPI 561
P+H++PFA+D +DL L+I F LG PF+PF+QLMG LPA S +++P + LMT+ S I
Sbjct: 719 PFHFSPFAADFEDLESLDIQFQLGSPFKPFEQLMGVLPADSRASIPPAFHPLMTESDSDI 778
Query: 562 YKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLY 621
FYP +F+IDMNGK+ AWQGV LPFIDEK LL K+ L+E+E+ RN + L+
Sbjct: 779 IDFYPSEFEIDMNGKKMAWQGVALLPFIDEKRLLDALKERYPLLSEDEVRRNGFGNNTLF 838
Query: 622 VHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNA--SGGMNGYI 664
V + LY + + + VN SGG+ G++
Sbjct: 839 VGNESRLYDFLCEEIYAKKRTTDDGETPKRVAVNPALSGGITGFV 883
>sp|Q60SG7|XRN2_CAEBR 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2
PE=3 SV=2
Length = 976
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/426 (54%), Positives = 293/426 (68%), Gaps = 8/426 (1%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL +YP ++V+ ED Q +G PVD ++PNPN EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLTKKYPATVVNA-NEDRQRGVDGRRVPVDCTQPNPNFQEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ +PAP + D++F IF+YID IF +VRPR+LLY+AIDGVAPRAKMNQQR+RRF
Sbjct: 60 HPCTHPEDRPAPKNEDEMFALIFEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPET---CDSNVITPGTQFMAVLSAALQY 177
RA+K+ AE A E R+ G + K+K E DSN ITPGT FMA L+ AL+Y
Sbjct: 120 RASKEMAEKAASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFMARLADALRY 179
Query: 178 FIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADL 237
+I R+ P W ++ILSDANVPGEGEHKIM YIR QR P DPNT HCL G DADL
Sbjct: 180 YIHDRVTNDPAWANIEIILSDANVPGEGEHKIMDYIRKQRGNPAHDPNTVHCLCGADADL 239
Query: 238 IMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPI 297
IML +ATHE +F+I+RE +P Q C +CGQ GH EC G +N D P
Sbjct: 240 IMLGIATHEANFNIIREEF-VPNQPRACELCGQYGHELKECRG--AENDTDLGDEYCKPE 296
Query: 298 HKKK-YQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356
++K + FL I VLREYL+ E+ +PN PF N ER +DD+VFLCFFVGNDFLPH+P+LEI
Sbjct: 297 QREKNFIFLRIPVLREYLEKEMAMPNLPFQFNLERALDDWVFLCFFVGNDFLPHLPSLEI 356
Query: 357 REGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYE 416
REGAI+ L+ +Y+ M GYLT G LDRVE ++ + ED+IF++R + ++ ++
Sbjct: 357 REGAIDRLIKLYKEMVYEMKGYLTKDGIPELDRVEMIMRGLGKVEDEIFKRRQQDEERFK 416
Query: 417 YNEAMK 422
N+ K
Sbjct: 417 ENQKNK 422
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 136/220 (61%), Gaps = 13/220 (5%)
Query: 425 ARRESSEELLQAPVAVADT-------VKLGEPGYKERYYADKFEISNPEEIDKVKKDVVL 477
A +ES + + P+ + D ++L E G+KERYY KF++ + +++D + V
Sbjct: 510 AAQESRKRKAEQPIIITDEDEEPKDDIRLYESGWKERYYRAKFDVGS-DDVD-FRHRVAW 567
Query: 478 KYVEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFL-GEPFRPFDQLMG 536
YVEGLCWV RYYYQ SW W++PYHYAPFASD + + + + F +PF P +QLM
Sbjct: 568 AYVEGLCWVLRYYYQGCSSWDWYFPYHYAPFASDFETVGEFKPDFTRPTKPFNPLEQLMS 627
Query: 537 TLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLR 596
PAAS LP +++ LMT+ SPI YP DF+ID+NGK++AWQGV LPF+DE+ LL
Sbjct: 628 VFPAASKQHLPVEWQKLMTEDESPIIDLYPADFRIDLNGKKYAWQGVALLPFVDEQRLLE 687
Query: 597 QTKKLEVFLTEEELFRNSVMLDLLYV---HPQHPLYQQIT 633
K + LT+EE +RN+ + +++ H +QQ+
Sbjct: 688 TLKSVYPTLTDEEKYRNTRGPNRIFIGRNHKSFAFFQQVA 727
>sp|Q2UCP5|XRN2_ASPOR 5'-3' exoribonuclease 2 OS=Aspergillus oryzae (strain ATCC 42149 /
RIB 40) GN=rat1 PE=3 SV=3
Length = 1035
Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/427 (50%), Positives = 295/427 (69%), Gaps = 8/427 (1%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDP-QVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGI 59
MGVPA +RWL+++YP I V+EE P +V+GE + PVD ++PNPNG E DNLYLDMNGI
Sbjct: 1 MGVPALFRWLSNKYPKIISPVIEEQPYEVNGEQI--PVDTTRPNPNGEELDNLYLDMNGI 58
Query: 60 IHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRR 119
+HPC HP+GKP P + ++ IF+Y D + +VRPRKLL +A+DGVAPRAKMNQQR RR
Sbjct: 59 VHPCTHPEGKPPPANEQEMMLEIFNYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARR 118
Query: 120 FRAAKDAAEAEAEEERLRKEFEEAGK---LLSAKEKPETCDSNVITPGTQFMAVLSAALQ 176
FR+A++A EA+ ++E RK+F + K + + +T DSNVITPGT FM +L+A+L+
Sbjct: 119 FRSAQEAKEADEKKEEFRKQFLKKSKGDQEIHEEVIQKTWDSNVITPGTPFMDILAASLR 178
Query: 177 YFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDAD 236
Y+I +LN P W+ K+I+SDA VPGEGEHKIM ++R QR P DPNTRH +YGLDAD
Sbjct: 179 YWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFVRSQRAAPEHDPNTRHVIYGLDAD 238
Query: 237 LIMLSLATHEIHFSILRE-VITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT 295
LIML LATHE HF +LRE V + C +CGQ GH A EC G+ + ++
Sbjct: 239 LIMLGLATHEPHFRVLREDVFFQESKARTCHLCGQAGHKAEECRGQAKEKNGQFD-EKGK 297
Query: 296 PIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLE 355
K + +LN+ +LREYL EL +P+ PFP + ER +DD+VF+CFFVGNDFLPH+P+L+
Sbjct: 298 GTSLKPFIWLNVSILREYLAVELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLD 357
Query: 356 IREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAY 415
IRE I+ L+ ++R MGGYLT G V + + +Q +A ED IF++R ++++
Sbjct: 358 IRENGIDTLIAIWRDNIPVMGGYLTKDGHVEFKKAQLILQGLAKQEDAIFRRRRQVEEKK 417
Query: 416 EYNEAMK 422
NE +
Sbjct: 418 LANEKRR 424
Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/253 (43%), Positives = 160/253 (63%), Gaps = 8/253 (3%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFY 501
DTV+L E GY +RYY KF + +P++ + + V Y EGL WV YY+Q SW W+Y
Sbjct: 583 DTVRLWEEGYADRYYEQKFGV-DPQD-KEFRHKVARAYAEGLAWVLLYYFQGCPSWNWYY 640
Query: 502 PYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPI 561
PYHYAPFA+D D+ D+E++F G PF+PF+QLMG LPA+S+ A+PE + +LM DP S I
Sbjct: 641 PYHYAPFAADFVDIGDMELSFEKGTPFKPFEQLMGVLPASSNHAIPEVFHDLMQDPESEI 700
Query: 562 YKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLY 621
FYP DF +D+NGK+FAWQGV+ LPFIDEK LL +K L+++E RN+V ++L
Sbjct: 701 IDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLAAMEKKYPLLSDDERHRNTVGREVLL 760
Query: 622 VHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRSIIPSPVK 681
+ HPLYQ + Q P+ + +++ S G+ G + E S + S ++
Sbjct: 761 LSDGHPLYQDLVANFYSKKQGAPK----YTLNMRVSEGLAGRVERNETYIPHSSLVSSLE 816
Query: 682 --GLPDIERNQAM 692
G+P +E ++++
Sbjct: 817 EYGMPTLEDDRSL 829
>sp|Q8IZH2|XRN1_HUMAN 5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1
Length = 1706
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/707 (37%), Positives = 377/707 (53%), Gaps = 113/707 (15%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVP FYRW+++RYP + +VV+E Q+ EFDNLYLDMNGII
Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEH-QIP------------------EFDNLYLDMNGII 40
Query: 61 HPCFHPDGKPAP--TSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTR 118
H C HP+ S D +F IF Y++ +F +++PRK+ ++A+DGVAPRAKMNQQR R
Sbjct: 41 HQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGR 100
Query: 119 RFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYF 178
RFR+AK+A E++++K E+ G+ L + + DSN ITPGT+FMA L L+YF
Sbjct: 101 RFRSAKEA------EDKIKKAIEK-GETLPTEAR---FDSNCITPGTEFMARLHEHLKYF 150
Query: 179 IQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
+ +++ WQ + S PGEGEHKIM +IR ++ P DPNTRHCLYGLDADLI
Sbjct: 151 VNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLI 210
Query: 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIH 298
ML L +HE HFS+LRE + G++ + VC ++T H
Sbjct: 211 MLGLTSHEAHFSLLREEVRFGGKKTQ-RVCAP----------------------EETTFH 247
Query: 299 KKKYQFLNIWVLREYLQYELDI--PNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356
L++ ++REY+ YE + F + ERI+DD++ + F VGNDF+PH+P L I
Sbjct: 248 -----LLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 357 REGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK--------R 408
A+ LL Y +GGY+ ++G + L R EK++ ++ ++ + F +
Sbjct: 303 NHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFE 362
Query: 409 TRIQQAY-------------EYNEAMKLNARRES---------------SEELLQAPVAV 440
+++ Y Y E KL + S S++ L+
Sbjct: 363 SKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDETED 422
Query: 441 ADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWF 500
D + YK YY K + D D YV+ + W+ YYY V SW W+
Sbjct: 423 DDLFETEFRQYKRTYYMTKMGVDVVS--DDFLADQAACYVQAIQWILHYYYHGVQSWSWY 480
Query: 501 YPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
YPYHYAPF SD+ ++S L+I F LG+PF+PF+QL+ LPAAS + LP Y++LMT+ SP
Sbjct: 481 YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP 540
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVM---- 616
I ++YPPDF+ D+NGK+ W+ VV +PFIDEK LL + L +EE RN
Sbjct: 541 IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM 600
Query: 617 ------LDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNAS 657
+ +Y P + I C Y + AW +D+N +
Sbjct: 601 CWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLD---AWRVDINKN 644
>sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rat1 PE=3
SV=4
Length = 1058
Score = 442 bits (1137), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/429 (51%), Positives = 297/429 (69%), Gaps = 10/429 (2%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDP-QVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGI 59
MGVPA +RWL+++YP I V+EE P +V+GE + PVD++KPNPNG E DNLYLDMNGI
Sbjct: 1 MGVPALFRWLSNKYPKIISPVIEELPYEVNGEEI--PVDITKPNPNGEEMDNLYLDMNGI 58
Query: 60 IHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRR 119
+HPC HP+GKP P + ++ IF Y D + +VRPRKLL +A+DGVAPRAKMNQQR RR
Sbjct: 59 VHPCTHPEGKPPPANEQEMMVEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARR 118
Query: 120 FRAAKDAAEAEAEEERLRKEF-EEAGKLLSAKEKPE----TCDSNVITPGTQFMAVLSAA 174
FR+A++A EA+ ++E RK ++ G + + + E T DSNVITPGT FM +L+A+
Sbjct: 119 FRSAQEAKEADEKKEEFRKMLAKQNGNKVDEELQEEVVKKTWDSNVITPGTPFMDILAAS 178
Query: 175 LQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLD 234
L+Y+I +LN P W+ K+I+SDA VPGEGEHKIM +IR QR P DPNTRH +YGLD
Sbjct: 179 LRYWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRAAPEHDPNTRHVIYGLD 238
Query: 235 ADLIMLSLATHEIHFSILRE-VITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVD 293
ADLIML LATHE HF +LRE V + C +CGQ GH A EC G+ + +++
Sbjct: 239 ADLIMLGLATHEPHFRVLREDVFFQESRARTCHLCGQQGHKAEECRGQAKEKNGEFD-EK 297
Query: 294 DTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPT 353
K + +L++ +LREYL EL +P+ PFP + ER +DD+VF+CFFVGNDFLPH+P+
Sbjct: 298 QKGSSLKPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPS 357
Query: 354 LEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQ 413
L+IRE I+ L+ ++R MGGYLT+ G V L R + +Q +A ED IF++R + ++
Sbjct: 358 LDIRENGIDTLIAIWRDNIPVMGGYLTEDGHVDLKRAQLILQGLAKQEDAIFRRRRQAEE 417
Query: 414 AYEYNEAMK 422
NE +
Sbjct: 418 RKLANEKRR 426
Score = 219 bits (558), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 162/253 (64%), Gaps = 8/253 (3%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFY 501
DTV+L E GY +RYY KF + +P++ + + V Y EGL WV YY+Q SW W+Y
Sbjct: 595 DTVRLWEEGYADRYYEQKFGV-DPQD-KEFRHKVARAYAEGLAWVLLYYFQGCPSWTWYY 652
Query: 502 PYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPI 561
PYHYAPFA+D D+ D+EITF G PF+PF+QLMG LPA+S+ A+P+ + +LM+ P S I
Sbjct: 653 PYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMGVLPASSNHAIPKVFHDLMSSPDSEI 712
Query: 562 YKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLY 621
FYP DF +D+NGK+FAWQGV+ LPFIDEK LL +K LTE+E RNSV ++L
Sbjct: 713 IDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLAAMEKKYPLLTEDEKLRNSVGREVLL 772
Query: 622 VHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRSIIPSPVK 681
+ HPLYQ L Y + Q +++++ S G+ G + E S +PS ++
Sbjct: 773 ISEAHPLYQD--LVANFYSK--KQGVQKYKLNMRISDGLAGKVERNEAYIPHSSLPSSLE 828
Query: 682 --GLPDIERNQAM 692
G+P +E ++++
Sbjct: 829 EYGMPSLEDDRSL 841
>sp|Q5BFH3|XRN2_EMENI 5'-3' exoribonuclease 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rat1 PE=3
SV=3
Length = 1032
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/438 (49%), Positives = 297/438 (67%), Gaps = 9/438 (2%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQ-VDGEGVARPVDVSKPNPNGMEFDNLYLDMNGI 59
MGVPA +RWL+ +YP I V+EE PQ V+GE + PVD++ PNPNG E DNLYLDMNGI
Sbjct: 1 MGVPALFRWLSKKYPKIISSVIEELPQEVNGEEI--PVDITGPNPNGEEMDNLYLDMNGI 58
Query: 60 IHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRR 119
+HPC HP+GKP P + ++ IF Y D + +VRPRKLL +A+DGVAPRAKMNQQR RR
Sbjct: 59 VHPCTHPEGKPPPANEQEMMIEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARR 118
Query: 120 FRAAKDAAEAEAEEER----LRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAAL 175
FR+A++A E + +++ L K+ + ++L + +T DSNVITPGT FM +L+A+L
Sbjct: 119 FRSAQEAREQDEKKQEFQRMLAKQNGDKEQMLQEEVIQKTWDSNVITPGTPFMDILAASL 178
Query: 176 QYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDA 235
+Y+I +LN P W+ K+I+SDA VPGEGEHKIM +IR QR P DPN RH +YGLDA
Sbjct: 179 RYWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRASPEHDPNARHVIYGLDA 238
Query: 236 DLIMLSLATHEIHFSILRE-VITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDD 294
DLIML LATHE HF +LRE V +Q C +CGQ GH A EC G+ + +++
Sbjct: 239 DLIMLGLATHEPHFRVLREDVFFQESKQRTCHLCGQPGHKAEECRGQAKEKNGEFDEKGK 298
Query: 295 TPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTL 354
K + +L++ +LREYL EL +P+ PFP + ER +DD+VF+CFFVGNDFLPH+P+L
Sbjct: 299 GAT-LKPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSL 357
Query: 355 EIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQA 414
+IRE I+ L+ ++R MGGYLT G V L + + +Q +A ED IF++R + ++
Sbjct: 358 DIREDGIDTLIAIWRDNIPLMGGYLTQDGRVDLKKAQLILQGLAKQEDAIFRRRRQAEER 417
Query: 415 YEYNEAMKLNARRESSEE 432
NE + + +EE
Sbjct: 418 KLANEKRRKQEEKARNEE 435
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 161/253 (63%), Gaps = 8/253 (3%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFY 501
DTV+L E GY +RYY KF + +P++ + + V Y EGL WV YY+Q SW W+Y
Sbjct: 578 DTVRLWEEGYADRYYEQKFGV-DPQD-KEFRHKVARAYAEGLAWVLLYYFQGCPSWTWYY 635
Query: 502 PYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPI 561
PYHYAPFA+D D+ D+E++F G PF+P++QLMG LPA+S+ A+P+ + +LMT+P S I
Sbjct: 636 PYHYAPFAADFVDIGDMELSFEKGTPFKPYEQLMGVLPASSNHAIPKVFHSLMTEPDSEI 695
Query: 562 YKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLY 621
FYP DF +D+NGK+FAWQGVV LPFIDEK LL K LTE+E RN+V D+L
Sbjct: 696 IDFYPEDFPVDLNGKKFAWQGVVLLPFIDEKRLLAAMSKKYPLLTEDEKARNTVGRDVLL 755
Query: 622 VHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRSIIPSPVK 681
+ HPLYQ + Q P+ +++++ S G+ G + E S + S ++
Sbjct: 756 LSESHPLYQDLVSNFYSKKQGAPK----YKLNMRVSDGLAGKVEKNEAYIPHSSLVSSLE 811
Query: 682 --GLPDIERNQAM 692
G+P +E ++++
Sbjct: 812 EYGMPSLEDDRSI 824
>sp|Q2GNZ6|XRN2_CHAGB 5'-3' exoribonuclease 2 OS=Chaetomium globosum (strain ATCC 6205 /
CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=RAT1
PE=3 SV=3
Length = 1039
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/425 (51%), Positives = 290/425 (68%), Gaps = 12/425 (2%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MG+PA +RWL+ +YP I VVEE V +G PVD ++PNPNG EFDNLYLDMNGI+
Sbjct: 1 MGIPAAFRWLSTKYPKIISPVVEEKALVMEDGTVVPVDATQPNPNGEEFDNLYLDMNGIV 60
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAI-DGVAPRAKMNQQRTRR 119
HPC HP+ +PAP+ +++ +F Y + + +VRPRKLL +A+ DGVAPRAKMNQQR+RR
Sbjct: 61 HPCSHPEDRPAPSDEEEMMVEVFKYTERVVNMVRPRKLLMIAVADGVAPRAKMNQQRSRR 120
Query: 120 FRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKP-ETC-----DSNVITPGTQFMAVLSA 173
FRAA+DA E E ++++L K ++ K +AKE+P ET DSN ITPGT FM +L+A
Sbjct: 121 FRAAQDAKEKEEDKQQLLKMLQKE-KGSTAKEEPIETVVKKAFDSNSITPGTPFMDILAA 179
Query: 174 ALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGL 233
+L+Y+ +LN P W KVI+SDA VPGEGEHKIM ++R QRN P DPNTRH +YGL
Sbjct: 180 SLRYWCAYKLNTDPAWAKMKVIISDATVPGEGEHKIMEFVRSQRNSPEHDPNTRHVIYGL 239
Query: 234 DADLIMLSLATHEIHFSILRE-VITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGV 292
DADLIML LATHE HF +LRE V G+ C +CGQ GH C G+ + +++
Sbjct: 240 DADLIMLGLATHEPHFRVLREDVFFQQGKARMCKLCGQKGHDERNCRGEAKEKAGEFDEK 299
Query: 293 DDT-PIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHM 351
D P+ K + +L++ +LREYL EL+IPN PF + ER +DD+VF+CFFVGNDFLPH+
Sbjct: 300 DKAEPL--KPFIWLHVSILREYLAIELNIPNLPFRWDLERAIDDWVFMCFFVGNDFLPHL 357
Query: 352 PTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRI 411
P LEIRE I LM +++ MGGY+T G V LDR + + +A ED IF++R
Sbjct: 358 PALEIRENGIETLMAIWKDNLPVMGGYVTKDGHVDLDRAQYILSGLAKQEDSIFRRRKET 417
Query: 412 QQAYE 416
+ E
Sbjct: 418 EDRRE 422
Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 153/254 (60%), Gaps = 9/254 (3%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFY 501
DTV+L E GY +RYY KF++ + ++I + V YVEGL WV YY+Q SW+WFY
Sbjct: 568 DTVRLWEEGYADRYYEQKFKV-DAKDI-AFRHKVARAYVEGLAWVLMYYFQGCPSWEWFY 625
Query: 502 PYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPI 561
PYHYAPFA+D DL ++I+F G RPF+QLM LPAAS A+PE + +LMT SPI
Sbjct: 626 PYHYAPFAADFVDLGKMKISFEKGRISRPFEQLMSVLPAASRHAIPEVFHDLMTQEDSPI 685
Query: 562 YKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLY 621
FYP DF+ID+NGK+ +WQG+ LPFI+ LL K L+ E+ RN+ D+L
Sbjct: 686 LDFYPEDFEIDLNGKKMSWQGIALLPFIEMPRLLDAMKTKSHLLSAEDKARNAPGHDVLL 745
Query: 622 VHPQHP-LYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRSIIPSPV 680
+ HP LY+ I+ + Q P+ +++D S G++G + E + P+
Sbjct: 746 ISDSHPGLYEDISSHFYSKKQAVPE----FKLDPKRSDGLSGKVRKIEGYVPHGSLVYPL 801
Query: 681 K--GLPDIERNQAM 692
+ +PD++ +++M
Sbjct: 802 ERNTMPDVDYDRSM 815
>sp|P0CL89|XRN2_CRYNB 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAT1 PE=3 SV=1
Length = 1130
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/432 (49%), Positives = 293/432 (67%), Gaps = 14/432 (3%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQV----DGEGVARPVDVSKPNPNGMEFDNLYLDM 56
MGVPA +RWL+ +YP + V E+ P+ DGE V P+ PNPNG E DNLYLDM
Sbjct: 1 MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDM 60
Query: 57 NGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQR 116
NGI+HPC HP+G+PAP + +++ IF Y + + + RPRK+L +AIDGVAPRAKMNQQR
Sbjct: 61 NGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQQR 120
Query: 117 TRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKE-KPETCDSNVITPGTQFMAVLSAAL 175
+RRFRAA++AA+ E E K FE G +S + ++ D+N ITPGT FM +LS +L
Sbjct: 121 SRRFRAAQEAADKEEERREAIKLFEAMGHAVSEETANHKSWDTNAITPGTPFMDLLSISL 180
Query: 176 QYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDA 235
+Y++ +L PGW+ K+ILSD++VPGEGEHKIM +IR QR+ P +D NT H +YGLDA
Sbjct: 181 KYWVSHKLTTDPGWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLDA 240
Query: 236 DLIMLSLATHEIHFSILREVITLPGQQ--EKCFVCGQVGHLAAECHGK---PGDNPADWN 290
DLIMLSLATHE HF +LRE + + C CG+VGH+AA C N A+
Sbjct: 241 DLIMLSLATHEPHFRVLREDVFAQSSKGPHACKNCGKVGHIAANCKSDKKFKDPNVAEVA 300
Query: 291 GVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPH 350
+D K + FL++ LREYL EL +P PFP + E +DD++F+ FFVGNDFLPH
Sbjct: 301 KTEDP----KPFIFLDVACLREYLAVELVVPGMPFPFDLELAIDDWIFMIFFVGNDFLPH 356
Query: 351 MPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTR 410
+P+LEIREGAI++L+ ++R E MGGYLT+ G+V LDR + ++ +A ED+IFQKR
Sbjct: 357 LPSLEIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKSEDEIFQKRKD 416
Query: 411 IQQAYEYNEAMK 422
++ E+++ +
Sbjct: 417 DEERQEHSQKRR 428
Score = 216 bits (549), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 144/230 (62%), Gaps = 10/230 (4%)
Query: 438 VAVADTVKLGEPGYKERYYADKF--EISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVC 495
V D VKL EPGY+ERYY KF ++S E IDKV K Y+EGLCWV YYYQ V
Sbjct: 683 VDYEDDVKLWEPGYRERYYEKKFGVKLSEREFIDKVTK----SYMEGLCWVLEYYYQGVP 738
Query: 496 SWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMT 555
+W WFYPYHYAPFA D +D+ ++I F PF+PF QL+G PAAS LPE + LM
Sbjct: 739 AWDWFYPYHYAPFAQDFRDVGSMDIKFETSIPFKPFAQLLGVFPAASRIHLPEPLQTLMI 798
Query: 556 DPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSV 615
D SPI FYPPDF+IDMNGK+ AWQGV LPFID+ LL K E L+++E RNS
Sbjct: 799 DEDSPILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLTALKSKEELLSDDEKRRNSW 858
Query: 616 MLDLLYVHPQHPLYQQITLYCQLYHQLPPQD-RFAWEIDVNASGGMNGYI 664
+++++ ++PLY L+C + L +D ID AS G+ G +
Sbjct: 859 GDNVMFIANENPLYD---LFCDKLYGLRAKDVSKPIPIDTKASYGITGSV 905
>sp|P0CL88|XRN2_CRYNJ 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAT1 PE=3
SV=1
Length = 1127
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/432 (49%), Positives = 293/432 (67%), Gaps = 14/432 (3%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQV----DGEGVARPVDVSKPNPNGMEFDNLYLDM 56
MGVPA +RWL+ +YP + V E+ P+ DGE V P+ PNPNG E DNLYLDM
Sbjct: 1 MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDM 60
Query: 57 NGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQR 116
NGI+HPC HP+G+PAP + +++ IF Y + + + RPRK+L +AIDGVAPRAKMNQQR
Sbjct: 61 NGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQQR 120
Query: 117 TRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKE-KPETCDSNVITPGTQFMAVLSAAL 175
+RRFRAA++AA+ E E K FE G +S + ++ D+N ITPGT FM +LS +L
Sbjct: 121 SRRFRAAQEAADKEEERREAIKLFEAMGHAVSEETANHKSWDTNAITPGTPFMDLLSISL 180
Query: 176 QYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDA 235
+Y++ +L PGW+ K+ILSD++VPGEGEHKIM +IR QR+ P +D NT H +YGLDA
Sbjct: 181 KYWVSHKLTTDPGWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLDA 240
Query: 236 DLIMLSLATHEIHFSILREVITLPGQQ--EKCFVCGQVGHLAAECHGK---PGDNPADWN 290
DLIMLSLATHE HF +LRE + + C CG+VGH+AA C N A+
Sbjct: 241 DLIMLSLATHEPHFRVLREDVFAQSSKGPHACKNCGKVGHIAANCKSDKKFKDPNVAEVA 300
Query: 291 GVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPH 350
+D K + FL++ LREYL EL +P PFP + E +DD++F+ FFVGNDFLPH
Sbjct: 301 KTEDP----KPFIFLDVACLREYLAVELVVPGMPFPFDLELAIDDWIFMIFFVGNDFLPH 356
Query: 351 MPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTR 410
+P+LEIREGAI++L+ ++R E MGGYLT+ G+V LDR + ++ +A ED+IFQKR
Sbjct: 357 LPSLEIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKSEDEIFQKRKD 416
Query: 411 IQQAYEYNEAMK 422
++ E+++ +
Sbjct: 417 DEERQEHSQKRR 428
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 144/229 (62%), Gaps = 11/229 (4%)
Query: 438 VAVADTVKLGEPGYKERYYADKF--EISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVC 495
V D VKL EPGY+ERYY KF ++S E IDKV K Y+EGLCWV YYYQ V
Sbjct: 683 VDYEDDVKLWEPGYRERYYEKKFGVKLSEREFIDKVTK----SYMEGLCWVLEYYYQGVP 738
Query: 496 SWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMT 555
+W WFYPYHYAPFA D +D+ ++I F PF+PF QL+G PAAS LPE + LM
Sbjct: 739 AWDWFYPYHYAPFAQDFRDVGSMDIKFETSIPFKPFAQLLGVFPAASRIHLPEPLQTLMI 798
Query: 556 DPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSV 615
D SPI FYPPDF+IDMNGK+ AWQGV LPFID+ LL K E L+++E RNS
Sbjct: 799 DEDSPILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLTALKSKEELLSDDEKRRNSW 858
Query: 616 MLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYI 664
+++++ ++PLY L+C + L +D ID AS G+ G +
Sbjct: 859 GDNVMFIANENPLYD---LFCDKLYGLRAKDPIP--IDTKASYGITGSV 902
>sp|Q4HWE2|XRN2_GIBZE 5'-3' exoribonuclease 2 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAT1 PE=3 SV=3
Length = 980
Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/424 (49%), Positives = 283/424 (66%), Gaps = 7/424 (1%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MG+PA +RWL+ RYP I V+E+ P V +G PVD ++PNPNG EFDNLYLDMNGI+
Sbjct: 1 MGIPAAFRWLSTRYPKIISPVIEDQPLVMEDGSTIPVDTTRPNPNGEEFDNLYLDMNGIV 60
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ +PAP +++ +F Y D + +VRPRK+L +A+DGVAPRAKMNQQR+RRF
Sbjct: 61 HPCSHPEDRPAPKDEEEMMMEVFRYTDRVVNMVRPRKILMIAVDGVAPRAKMNQQRSRRF 120
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETC-----DSNVITPGTQFMAVLSAAL 175
R+A++A E E +++ L K ++ + E ET DSN ITPGT FM +L+ +L
Sbjct: 121 RSAQEAQEKEQDKQELIKMLKQQNGGNLSTESLETVTKKAFDSNSITPGTPFMDILALSL 180
Query: 176 QYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDA 235
+Y+ Q +LN PGW K+I+SDA VPGEGEHKIM+++R QR P DPNTRH +YGLDA
Sbjct: 181 RYWCQYKLNTDPGWAKLKIIISDATVPGEGEHKIMNFVRSQRASPDHDPNTRHVIYGLDA 240
Query: 236 DLIMLSLATHEIHFSILREVITLPGQQEK-CFVCGQVGHLAAECHGKPGDNPADWNGVDD 294
DLIML LATHE HF +LRE + Q+ + C +CGQ GH A C G+ + + D
Sbjct: 241 DLIMLGLATHEPHFRVLREDVFFQDQKARLCKICGQKGHDAQNCRGEEKKKDGEHD-EKD 299
Query: 295 TPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTL 354
+ K + +L++ VLREYL EL +PN PF + ER VDD++F+C FVGNDFLPH+P L
Sbjct: 300 KGVALKPFIWLHVAVLREYLAVELGVPNLPFRFDLERAVDDWIFMCCFVGNDFLPHLPAL 359
Query: 355 EIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQA 414
EIRE I+ L +++ MGGY+T G + L+R + + +A ED IF++R +
Sbjct: 360 EIREHGIDTLTKIWKDNLPVMGGYVTKDGHIDLERAQVILDGLAQQEDNIFKRRKEQEDR 419
Query: 415 YEYN 418
E N
Sbjct: 420 REAN 423
Score = 179 bits (454), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 161/277 (58%), Gaps = 15/277 (5%)
Query: 419 EAMKLNARRESSEELLQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLK 478
+A ++ S+EE PV D V+L E GY +RYY KF +P++I+ + V
Sbjct: 543 DAASVSTPSTSAEE---GPV---DDVRLWEDGYADRYYEKKFH-KDPKDIE-FRHGVGRA 594
Query: 479 YVEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTL 538
YVEGL WV YY+Q SW+W+YPYHYAPFA+D KD++ + I+F G +PF+QLM L
Sbjct: 595 YVEGLAWVLLYYFQGCPSWEWYYPYHYAPFAADFKDIAKMNISFEKGRVSKPFEQLMSVL 654
Query: 539 PAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQT 598
PAAS ALPE + +LM +P S I FYP DF+ID+NGK+FAWQGV LPFI+ LL
Sbjct: 655 PAASRHALPEVFHDLMLNPESNIIDFYPEDFEIDLNGKKFAWQGVALLPFIEMPRLLAAV 714
Query: 599 KKLEVFLTEEELFRNSVMLDLLYVHPQH-PLYQQITLYCQLYHQLPPQDRFAWEIDVNAS 657
+ L+ + RN + D+L H LY ++ + Y + +F +++ S
Sbjct: 715 QSKYPELSAADSARNEMGRDVLIFSEGHESLYDEV--LTKFYSKKQGDSKF--KLNPKKS 770
Query: 658 GGMNGYIWLCERNGLRSIIPSPVK--GLPDIERNQAM 692
G++G + E S + P++ +PD++ ++++
Sbjct: 771 DGLSGRVEKKEGYVPHSELKYPLERNSMPDLDYDRSV 807
>sp|P97789|XRN1_MOUSE 5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1
Length = 1719
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/705 (36%), Positives = 369/705 (52%), Gaps = 113/705 (16%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVP FYRW+++RYP + +VV+E Q+ EFDNLYLDMNGII
Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEH-QIP------------------EFDNLYLDMNGII 40
Query: 61 HPCFHPDGKPAP--TSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTR 118
H C HP+ S D +F IF Y++ +F +++PRK+ ++A+DGVAPRAKMNQQR R
Sbjct: 41 HQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGR 100
Query: 119 RFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYF 178
RFR+AK+A E++++K E+ G+ L + + DSN ITPGT+FMA L L+YF
Sbjct: 101 RFRSAKEA------EDKIKKAIEK-GETLPTEAR---FDSNCITPGTEFMARLHEHLKYF 150
Query: 179 IQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
+ +++ WQ + S PGEGEHKIM +IR ++ P DPNTRHCLYGLDADLI
Sbjct: 151 VNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLI 210
Query: 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIH 298
ML L +HE HFS+LRE + G++ + VC ++T H
Sbjct: 211 MLGLTSHEAHFSLLREEVRFGGKKTQ-RVCAP----------------------EETTFH 247
Query: 299 KKKYQFLNIWVLREYLQYELDI--PNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356
L++ ++REY+ YE F + E+I+DD++ + F VGNDF+PH+P L I
Sbjct: 248 -----LLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHI 302
Query: 357 REGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK--------R 408
A+ LL Y +GGY+ ++G + L R E+++ ++ ++ + F +
Sbjct: 303 NHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSEVFVDLKWFE 362
Query: 409 TRIQQAY-------------EYNEAMKLNARRES---------------SEELLQAPVAV 440
+++ Y E K + S S + +
Sbjct: 363 SKVGNKYLNEAAGAAAEEAKNCKEKRKPKGQENSLSWAALDKSEGEGVASRDNFEDETED 422
Query: 441 ADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWF 500
D + YK YY K + D+ + YV+ + W+ YYY V SW W+
Sbjct: 423 DDLFETEFRQYKRTYYMTKMGVDVVS--DEFLANQAACYVQAIQWILHYYYHGVQSWSWY 480
Query: 501 YPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
YPYHYAPF SD++ +S L+I F LG+PF+PF+QL+ LP+AS + LP Y++LMT SP
Sbjct: 481 YPYHYAPFLSDIRSISTLKIHFELGKPFKPFEQLLAVLPSASKNLLPTCYQHLMTSEDSP 540
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVM---- 616
I ++YPPDF+ D+NGK+ W+ VV +PFIDE LL + L +EE RN
Sbjct: 541 IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLKKEERKRNQHSECLM 600
Query: 617 ------LDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVN 655
+ Y P + I C Y + AW +D+N
Sbjct: 601 CWYDRDTEFTYSSPWPEKFPAIERCCTRYKMISLD---AWRVDIN 642
>sp|Q8WZX5|XRN2_NEUCR 5'-3' exoribonuclease 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rat-1
PE=3 SV=3
Length = 1072
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/422 (49%), Positives = 278/422 (65%), Gaps = 7/422 (1%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MG+PA +RWL+ +YP I V+E+ P +G PVD +KPNPNG EFDNLYLDMNGI+
Sbjct: 1 MGIPAAFRWLSTKYPKIISPVIEDQPITMPDGTVIPVDATKPNPNGEEFDNLYLDMNGIV 60
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ +PAP +++ +F Y D + +VRPRKLL +A+DGVAPRAKMNQQR+RRF
Sbjct: 61 HPCSHPEDRPAPKDEEEMMVEVFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSRRF 120
Query: 121 RAAKDAAEAEAEEERL-----RKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAAL 175
RAA++A E E ++++ ++ + + + DSN ITPGT FM +L+A+L
Sbjct: 121 RAAREAMEKEEDKQKFVELLKKQNGKPQEEEPVEVVVKKAFDSNSITPGTPFMDILAASL 180
Query: 176 QYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDA 235
+Y+ +LN P W KVI+SDA VPGEGEHKIM ++R QR P DPNTRH +YGLDA
Sbjct: 181 RYWCSYKLNTDPAWANIKVIISDATVPGEGEHKIMEFVRSQRGSPNHDPNTRHVIYGLDA 240
Query: 236 DLIMLSLATHEIHFSILRE-VITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDD 294
DLIML LATHE HF +LRE V + C +CGQ GH A C G+ + +++ D
Sbjct: 241 DLIMLGLATHEPHFRVLREDVFAQDSRPRLCKICGQKGHDAMNCKGEAKEKNGEFD-EKD 299
Query: 295 TPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTL 354
+ K + +L++ +LREYL ELD+P PF N ER +DD+VF+CFFVGNDFLPH+P L
Sbjct: 300 AVVPLKPFIWLHVSILREYLAIELDVPGLPFQFNLERAIDDWVFMCFFVGNDFLPHLPAL 359
Query: 355 EIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQA 414
EIRE I+ L +++ MGGYLT G L+RV+ + +A ED IF++R +
Sbjct: 360 EIRENGIDTLTAIWKDNLPVMGGYLTKDGHADLERVQYIMAGLAKQEDAIFRRRKETEDR 419
Query: 415 YE 416
E
Sbjct: 420 RE 421
Score = 192 bits (489), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 139/234 (59%), Gaps = 7/234 (2%)
Query: 432 ELLQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYY 491
E+ ++ D+V+L E GY +RYY KF++ ++ID + V Y EGL WV YY+
Sbjct: 568 EISESDAEPTDSVRLWEEGYADRYYEQKFKVDR-KDID-FRHKVGRAYAEGLAWVLEYYF 625
Query: 492 QDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYR 551
Q SW+WFYPYHYAPFA+D DL +EI F G RPF+QLM LPAAS A+PE +
Sbjct: 626 QGCPSWEWFYPYHYAPFAADFVDLGKMEIKFEKGRISRPFEQLMSVLPAASRHAIPEVFH 685
Query: 552 NLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELF 611
+LM + +S I FYP DF+ID+NGK+ AWQGV LPFID LL + L+ E+
Sbjct: 686 SLMLEETSEIRHFYPDDFEIDLNGKKMAWQGVALLPFIDMPRLLAAMETKSHLLSPEDHL 745
Query: 612 RNSVMLDLLYVHPQHP-LYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYI 664
RN+ D L + HP LY IT Q Y + +F E+D S G++G +
Sbjct: 746 RNAPGKDYLLLSDSHPTLYDHIT--SQFYSKKQGTTKF--ELDPTKSAGLSGLV 795
>sp|Q6BNU7|XRN2_DEBHA 5'-3' exoribonuclease 2 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAT1
PE=3 SV=4
Length = 1003
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/430 (47%), Positives = 288/430 (66%), Gaps = 21/430 (4%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGE-GVARPVDVSKPNPNGMEFDNLYLDMNGI 59
MGVPA +RWL+ +YP I VVE+D V E G A+ S PNPNG E DNLYLDMNGI
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEDD--VTQEIGAAQ---FSDPNPNG-ELDNLYLDMNGI 54
Query: 60 IHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRR 119
+HPC HP+ K P + D++F +F Y D + L+ RPRK+L +A+DGVAPRAKMNQQR+RR
Sbjct: 55 VHPCSHPEHKLPPETEDEMFLDVFKYTDRVLLMARPRKVLMIAVDGVAPRAKMNQQRSRR 114
Query: 120 FRAAKDAAEAEAEEERLRKEFEEAGKLLS-AKEKPETCDSNVITPGTQFMAVLSAALQYF 178
FR+A+DA A E+ER +E E G+ + A + ++ DSN ITPGT FM L+ AL+Y+
Sbjct: 115 FRSAQDAKIAHEEKERQIRERESRGESIDDAIKGKKSWDSNAITPGTPFMDSLAQALRYW 174
Query: 179 IQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
+ +L PGW +VI+SDA VPGEGEHK+MS+IR QR+ P +DPNT+HC+YGLDADLI
Sbjct: 175 VAYKLATDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPEYDPNTKHCIYGLDADLI 234
Query: 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIH 298
L LATHE HF +LRE + Q + + Q+ + D+ A+ +
Sbjct: 235 FLGLATHEPHFRVLREDV-FANQSRQMRISDQLSMTQDQ-----KDSIAEQDA------- 281
Query: 299 KKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIRE 358
KK + +L++ VLREYL+ EL P+ FP + ER +DD+VF+CFFVGNDFLPH+P+L++R+
Sbjct: 282 KKPFLWLHVNVLREYLEIELYNPHLSFPFDLERAIDDWVFMCFFVGNDFLPHLPSLDVRD 341
Query: 359 GAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYN 418
I++L++ ++R + Y+T G + L+ VEK + S++ ED+IF+KR ++ E N
Sbjct: 342 NGIDILVNCWKRMLPKLRDYITCDGNLNLESVEKLLSSLSYKEDEIFRKRHEGEKRREEN 401
Query: 419 EAMKLNARRE 428
+ + A+ E
Sbjct: 402 DKRRKLAQEE 411
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 146/213 (68%), Gaps = 6/213 (2%)
Query: 431 EELLQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYY 490
E L P D+V++ EPGY++RYY KF + + EEI+K+++D+V Y+EG+ WV YY
Sbjct: 526 EAELPKPDENGDSVRMWEPGYRQRYYQSKFGVVSEEEINKIRRDMVRCYLEGISWVLLYY 585
Query: 491 YQDVCSWQWFYPYHYAPFASDLKDLSDL----EITFFLGEPFRPFDQLMGTLPAASSSAL 546
YQ SWQW+YPYHYAPFA+D +++D+ I F LGEPF+P++QLM LPAAS L
Sbjct: 586 YQGCPSWQWYYPYHYAPFAADFVNINDIIGEQGIKFTLGEPFKPYEQLMSVLPAASGHNL 645
Query: 547 PEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLT 606
PE R LM+DPSS I FYP +FQIDMNGK+ +WQG+ LPFIDE LL +K LT
Sbjct: 646 PEVLRILMSDPSSEILDFYPEEFQIDMNGKKMSWQGIALLPFIDENRLLEALEKRYHLLT 705
Query: 607 EEELFRNSVMLDLLYVHPQHPLYQQITLYCQLY 639
++E RN++ ++L++ Q+ Y++ Y +LY
Sbjct: 706 DDERERNTLKNEVLFISNQNKNYKR--FYNELY 736
>sp|Q02792|XRN2_YEAST 5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAT1 PE=1 SV=3
Length = 1006
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/428 (46%), Positives = 279/428 (65%), Gaps = 21/428 (4%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVP+F+RWL+ +YP I V+EE PQ+ +GV P+D S NPNG E DNLYLDMNGI+
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEQPQI-VDGVILPLDYSASNPNG-ELDNLYLDMNGIV 58
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ KP P + D++ ++F+Y + + + RPRK+L +A+DGVAPRAKMNQQR RRF
Sbjct: 59 HPCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRF 118
Query: 121 RAAKDAA-EAEAEEERLRKEFEEAGKLLS-AKEKPETCDSNVITPGTQFMAVLSAALQYF 178
R+A+DA E EA EE +R+ EE G+++ A +T DSN ITPGT FM L+AAL+Y+
Sbjct: 119 RSARDAQIENEAREEIMRQR-EEVGEIIDDAVRNKKTWDSNAITPGTPFMDKLAAALRYW 177
Query: 179 IQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
+L PGW+ +VI+SDA VPGEGEHKIM++IR QR P ++PNT HC+YGLDADLI
Sbjct: 178 TAFKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLI 237
Query: 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIH 298
L LATHE HF ILRE + +++ + + E N
Sbjct: 238 FLGLATHEPHFKILREDVFAQDNRKRNNLKDTINMTEEEKQFLQKQN------------S 285
Query: 299 KKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIRE 358
++ + +L+I VLREYL EL +P PF + ER +DD+VF+CFF GNDFLPH+P L++RE
Sbjct: 286 EQPFLWLHINVLREYLSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRE 345
Query: 359 GAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKR----TRIQQA 414
+I++L+ +++ + Y+T G + L VE +Q + E IF+ R R ++A
Sbjct: 346 NSIDILLDIWKVVLPKLKTYMTCDGVLNLPSVETLLQHLGSREGDIFKTRHIQEARKKEA 405
Query: 415 YEYNEAMK 422
+E +A K
Sbjct: 406 FERRKAQK 413
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/190 (48%), Positives = 126/190 (66%), Gaps = 1/190 (0%)
Query: 444 VKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFYPY 503
VKL EPGY ERYY KF ++ P++I++++KD+V Y+EG+ WV YYYQ SW WFYPY
Sbjct: 597 VKLFEPGYHERYYTAKFHVT-PQDIEQLRKDMVKCYIEGVAWVLMYYYQGCASWNWFYPY 655
Query: 504 HYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYK 563
HYAP A+D S LEI F G PF P++QLM LPAAS ALP+ +R+LM++P S I
Sbjct: 656 HYAPLATDFHGFSHLEIKFEEGTPFLPYEQLMSVLPAASGHALPKIFRSLMSEPDSEIID 715
Query: 564 FYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLYVH 623
FYP +F IDMNGK+ +WQG+ LPFID+ LL + L++ E RN +L +
Sbjct: 716 FYPEEFPIDMNGKKMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAERARNIRGEPVLLIS 775
Query: 624 PQHPLYQQIT 633
++ Y++ +
Sbjct: 776 NKNANYERFS 785
>sp|Q6FKN6|XRN2_CANGA 5'-3' exoribonuclease 2 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAT1 PE=3
SV=3
Length = 1018
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/451 (46%), Positives = 294/451 (65%), Gaps = 22/451 (4%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVP+F+RWL+ +YP I V+EE PQ +GVA P+D + PNPNG E DNLYLDMNGI+
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEE-PQQLVDGVALPIDYAGPNPNG-ELDNLYLDMNGIV 58
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ KP P + DD+ ++F+Y + + + RPRK+L +A+DGVAPRAKMNQQR+RRF
Sbjct: 59 HPCSHPENKPPPETEDDMLLAVFEYTNRVLNMARPRKVLVIAVDGVAPRAKMNQQRSRRF 118
Query: 121 RAAKDAA-EAEAEEERLRKEFEEAGKLL--SAKEKPETCDSNVITPGTQFMAVLSAALQY 177
R+A+DA E EA EE +R++ E+ G+++ S K K +T DSN ITPGT FM L+ AL+Y
Sbjct: 119 RSARDAEIENEAREEIMRQK-EQLGQIIDDSVKNK-KTWDSNAITPGTPFMDKLAIALRY 176
Query: 178 FIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADL 237
+ +L PGW+ +VI+SDA VPGEGEHKIM++IR QR P ++PNT HC+YGLDADL
Sbjct: 177 WTAFKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADL 236
Query: 238 IMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPI 297
I L LATHE HF ILRE + +++ V + D D D+
Sbjct: 237 IFLGLATHEPHFKILREDVFAQDNRKRNNVKDTIDMT---------DEEKDLIRKQDS-- 285
Query: 298 HKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIR 357
+K + +L+I VLREYL EL P PFP + ER +DD+VF+CFF GNDFLPH+P L++R
Sbjct: 286 -EKPFLWLHISVLREYLSAELWTPKLPFPFDLERAIDDWVFMCFFCGNDFLPHLPCLDVR 344
Query: 358 EGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQ--AY 415
E +I++L+ +++ + Y+T G++ L+ VE ++ + E IF+ R IQ+
Sbjct: 345 ENSIDILLDIWKSILPRLKTYMTCDGKLNLESVEMVLKELGNREGDIFKTR-HIQEIRKK 403
Query: 416 EYNEAMKLNARRESSEELLQAPVAVADTVKL 446
E NE K ++ S + P + +++
Sbjct: 404 EANERRKQQKQQNVSTGQDRHPTKFNEQLQM 434
Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 1/203 (0%)
Query: 429 SSEELLQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCR 488
S+ + + + VKL EPGY +RYY +KF I P +I + K +V Y+EG+ WV
Sbjct: 582 SNGGITSGVIDTDEAVKLFEPGYHDRYYIEKFHIE-PNQIPALSKHMVKCYIEGVSWVLM 640
Query: 489 YYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPE 548
YYYQ SW W+YPYHYAP A D D DL+I F LGEPF P++QLM LPAAS LPE
Sbjct: 641 YYYQGCASWTWYYPYHYAPLAEDFVDFHDLDIKFELGEPFLPYEQLMSVLPAASGHNLPE 700
Query: 549 KYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEE 608
+R LM+ S I FYP +F IDMNGK+ +WQG+ LPFIDE LL T+ FL+E+
Sbjct: 701 VFRPLMSSEDSEIIDFYPTEFPIDMNGKKMSWQGIALLPFIDETRLLTATRNQYKFLSED 760
Query: 609 ELFRNSVMLDLLYVHPQHPLYQQ 631
E RN+ +L + ++ Y++
Sbjct: 761 EKRRNTRNDPVLLISNKNVNYEK 783
>sp|Q5AMG5|XRN2_CANAL 5'-3' exoribonuclease 2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAT1 PE=3 SV=3
Length = 968
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 206/443 (46%), Positives = 276/443 (62%), Gaps = 38/443 (8%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEE-DPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGI 59
MGVPA +RWL+ +YP I VVEE D ++ G PNPNG E DNLYLDMNGI
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGG------AKYENPNPNG-EIDNLYLDMNGI 53
Query: 60 IHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRR 119
+HPC HP+ K P + D++F IF Y D + ++ RPRK+L +A+DGVAPRAKMNQQR RR
Sbjct: 54 VHPCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARR 113
Query: 120 FRAAKDAA------EAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSA 173
FRAAKDA E E +E LR E + A + + DSN ITPGT FM L+
Sbjct: 114 FRAAKDAELKAKQLEIEVQERELRGEI-----INDAIKGKKQWDSNAITPGTPFMDRLAE 168
Query: 174 ALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGL 233
AL+Y++ +L+ PGW +VI+SDA VPGEGEHK+MS+IR QR+ P +DPNT+HC+YGL
Sbjct: 169 ALRYWVAYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGL 228
Query: 234 DADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVD 293
DADLI L LATHE HF +LRE + Q +K + Q+ A+ NG
Sbjct: 229 DADLIFLGLATHEPHFRVLREDV-FASQDKKFTIKDQIAD-------------ANSNGDT 274
Query: 294 DTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPT 353
KK + +L++ VLREYLQ EL P FP ER +DD+VFLCFF GNDFLPH+P+
Sbjct: 275 VAKEDKKPFLWLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDFLPHLPS 334
Query: 354 LEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQ 413
L++R+ I+ L+ ++R + Y+T G++ L VE + ++A E +IF+ + +Q
Sbjct: 335 LDVRDNGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVLMSNLAYKESEIFKNKHAAEQ 394
Query: 414 AYEYNEAMKLNARRESSEELLQA 436
E N N RR+ ++E +A
Sbjct: 395 RREEN-----NKRRKLAQEQERA 412
Score = 209 bits (532), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 169/295 (57%), Gaps = 19/295 (6%)
Query: 380 TDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAY----EYNEAMKLNA--RRESSEEL 433
+DA L ++ V V +DQI + + E E N+ R+ EE
Sbjct: 472 SDAAAELKKLIDSKKTQVTVVQDQIATDSSANSETTTSESELEEIQSDNSLKRKLEPEED 531
Query: 434 LQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQD 493
Q +D +KL EPGY +RYY KF + EEI++ K+DVV YVEG+ WV YYYQ
Sbjct: 532 KQTQ---SDDIKLWEPGYNKRYYEAKFHYQSDEEIEQTKRDVVRHYVEGIAWVALYYYQG 588
Query: 494 VCSWQWFYPYHYAPFASDLKDLSDL---EITFFLGEPFRPFDQLMGTLPAASSSALPEKY 550
SW W++PYHYAPFA+D +L +L + F LGEPFRPF+QLM LPAAS LP+ +
Sbjct: 589 CPSWNWYFPYHYAPFAADFTNLEELFPEGVKFKLGEPFRPFEQLMSVLPAASGHTLPQVF 648
Query: 551 RNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEEL 610
R+LM++P S I FYP +F+IDMNGK+ +WQG+ LPFIDEK LL +K LT +E
Sbjct: 649 RDLMSNPDSEIIDFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDEK 708
Query: 611 FRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIW 665
RN+ L++ P + + + + +LY + + F + A G++G I+
Sbjct: 709 SRNTNKEAELFISPANKNFSKFS--EKLYKENENEVTFKY-----AKSGLSGKIF 756
>sp|Q74ZA0|XRN2_ASHGO 5'-3' exoribonuclease 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAT1 PE=3 SV=4
Length = 945
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/429 (45%), Positives = 281/429 (65%), Gaps = 19/429 (4%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVP+F+RWL+ +YP I V+E+ PQV +GV P+D S NPNG E DNLYLDMNGI+
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVIEDTPQV-VDGVKLPIDYSAANPNG-ELDNLYLDMNGIV 58
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ KPAP + D++ ++F+Y + + + RPRK+L +A+DGVAPRAKMNQQR+RRF
Sbjct: 59 HPCSHPENKPAPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRSRRF 118
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLS-AKEKPETCDSNVITPGTQFMAVLSAALQYFI 179
R+A+DA A E+ R+ E E G+++ A + ++ D+N ITPGT FM L+AAL+Y+
Sbjct: 119 RSARDAKLANEEKARVLAEREAYGEMIDDAVKAKKSWDTNAITPGTPFMDKLAAALRYWT 178
Query: 180 QARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
+L PGW+ +VI+SDA VPGEGEHKIM++IR QR ++PNT HC+YGLDADLI
Sbjct: 179 SFKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADVQYNPNTTHCIYGLDADLIF 238
Query: 240 LSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHK 299
L LATHE HF ILRE + + + + A E + +
Sbjct: 239 LGLATHEPHFKILREDVFAQDNRRRPRQHDMMDMSAEEKQALIEQD------------AE 286
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
K + +L++ VLREYL EL +P PF + ER +DD+VF+CFF GNDFLPH+P+L++RE
Sbjct: 287 KPFLWLHVSVLREYLSAELLVPRLPFHFDLERAIDDWVFMCFFCGNDFLPHLPSLDVREN 346
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKR----TRIQQAY 415
+I++L+ +++ ++ YLT G++ L VEK + + E IF+K+ R ++A
Sbjct: 347 SIDILVDIWKAVLPSLKTYLTCDGKLNLKGVEKVLAQLGNRESDIFKKKYEQELRKKEAQ 406
Query: 416 EYNEAMKLN 424
E + +K N
Sbjct: 407 ERRKMLKNN 415
Score = 205 bits (522), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 146/250 (58%), Gaps = 12/250 (4%)
Query: 444 VKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFYPY 503
V+L EPGY +RYY KF + ID ++K VV YVEG+ WV YYYQ SW W+YPY
Sbjct: 583 VRLFEPGYHDRYYQAKFHVPT-GSIDALRKKVVRSYVEGISWVLLYYYQGCPSWTWYYPY 641
Query: 504 HYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYK 563
HYAPFASD +SDL +TF LGEPF P++QLM LPAASS LP+ +R+LM+DP S IY
Sbjct: 642 HYAPFASDFTGISDLSVTFDLGEPFLPYEQLMSVLPAASSHNLPDVFRSLMSDPESEIYD 701
Query: 564 FYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLYVH 623
FYP +F IDMNG++ AW+ +V LPFIDE LL ++ L+E E RN ++L +
Sbjct: 702 FYPEEFPIDMNGEKMAWKALVLLPFIDETRLLAAVRQKYPLLSEAERARNVRRDEVLLIS 761
Query: 624 PQHPLYQQITLYCQLYHQLPPQ----DRFAWEIDVNASGGMNGYIWLCERNGLRSIIPSP 679
++ Y++ +LY PQ F + A G+ R + + P
Sbjct: 762 NKNTHYER--FLARLYTDPAPQPVNFRHFKSGLAGTALSDAEGF-----RPNTKMLCPLA 814
Query: 680 VKGLPDIERN 689
LPDI N
Sbjct: 815 AGSLPDISTN 824
>sp|P40848|XRN2_SCHPO 5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dhp1 PE=1 SV=1
Length = 991
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 210/434 (48%), Positives = 285/434 (65%), Gaps = 16/434 (3%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPA +R L+ ++ I V+E + +G D+S PNPNG+E DNLYLDMNGI+
Sbjct: 1 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIV 60
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ +PAP + D++ ++F+Y D I +VRPR+LL++AIDGVAPRAKMNQQR+RRF
Sbjct: 61 HPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRF 120
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAK-EKPETCDSNVITPGTQFMAVLSAALQYFI 179
R++++AA E E + +E ++ G + K ++ DSN ITPGT FM L+ +L+Y+I
Sbjct: 121 RSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYI 180
Query: 180 QARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
+LN P W+ + ILSDA+VPGEGEHKIM +IR QR P +DPNT H +YGLDADLIM
Sbjct: 181 INKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIM 240
Query: 240 LSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHG-KPGDNPADWNGVDDTPIH 298
L LATHE HF +LRE + F G E G K D+ ++ N V P+
Sbjct: 241 LGLATHEPHFRVLREDV--------FFQQGSTKKTKEERLGIKRLDDVSETNKV---PV- 288
Query: 299 KKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIRE 358
KK + +LN+ +LREYL+ EL +PN PFP + ER +DD+VF FFVGNDFLPH+P+L+IR+
Sbjct: 289 KKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRD 348
Query: 359 GAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYN 418
GA+ L ++R MGGYLT G V L R E + +V ED IF++ QQ N
Sbjct: 349 GAVERLTEIWRASLPHMGGYLTLDGSVNLARAEVILSAVGNQEDDIFKRLK--QQEDRRN 406
Query: 419 EAMKLNARRESSEE 432
E + +RES++E
Sbjct: 407 ENYRRRQQRESNQE 420
Score = 223 bits (567), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/201 (53%), Positives = 139/201 (69%), Gaps = 4/201 (1%)
Query: 441 ADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWF 500
DTV+L EPGY+ERYY KF IS P+E +K++ + V YV GLCWV YYYQ SW W+
Sbjct: 581 TDTVRLYEPGYRERYYEQKFHIS-PDEPEKIR-EAVKHYVHGLCWVLLYYYQGCPSWTWY 638
Query: 501 YPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
YPYHYAPFA+D KDL+ +++ F L +PF+P++QL+G LPAAS + LPEK + LMTD +S
Sbjct: 639 YPYHYAPFAADFKDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLMTDENSE 698
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP +F ID+NGK+F WQGV LPFIDE LL K+ LTEEE RN LL
Sbjct: 699 IIDFYPENFTIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNEDGSTLL 758
Query: 621 YVHPQHPLYQQITLYCQLYHQ 641
++ HP++ + L QLY +
Sbjct: 759 FISEHHPMFSE--LVKQLYSK 777
>sp|Q6CKX0|XRN2_KLULA 5'-3' exoribonuclease 2 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAT1 PE=3 SV=3
Length = 992
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/436 (44%), Positives = 277/436 (63%), Gaps = 33/436 (7%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVP+F+RWL+ +YP I V+EE P ++ +GV P+D S NPNG E DNLYLDMNGI+
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEYPVIE-DGVQLPLDYSSANPNG-ELDNLYLDMNGIV 58
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120
HPC HP+ KP P + D++ ++F+Y + + + RPRK+L +A+DGVAPRAKMNQQR RRF
Sbjct: 59 HPCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRARRF 118
Query: 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPE-TCDSNVITPGTQFMAVLSAALQYFI 179
R+A+DA E++ +E E+ G+ + K + T DSN ITPGT FM L+ AL+Y+
Sbjct: 119 RSARDAKLQNEAREQVLREREDYGETIDENVKSKKTWDSNAITPGTPFMDKLATALRYWT 178
Query: 180 QARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
+L PGW+ ++I+SDA VPGEGEHKIM++IR QR ++PNT HC+YGLDADLI
Sbjct: 179 SFKLATDPGWKNLQIIISDATVPGEGEHKIMNFIRSQRADTQYNPNTTHCIYGLDADLIF 238
Query: 240 LSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHK 299
L LATHE HF ILRE + A + KP P D + + +
Sbjct: 239 LGLATHEPHFKILREDV-----------------FANNNYKKP--KPQDMINLSEEEKQQ 279
Query: 300 -------KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMP 352
K + +L+I VLREYL EL IP+ F +FER +DD+VF+CFF GNDFLPH+P
Sbjct: 280 LIQQDSEKPFLWLHISVLREYLSAELAIPHLSFQFDFERAIDDWVFMCFFCGNDFLPHLP 339
Query: 353 TLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKR---- 408
L++RE +I++L+ +++ YLT G + L+ VE ++ + E +F+K+
Sbjct: 340 CLDVRENSIDILVDIWKTVLPKTKTYLTCDGTLNLEPVEALLEQLGDRETDLFKKKYIQE 399
Query: 409 TRIQQAYEYNEAMKLN 424
R Q+A++ + +K N
Sbjct: 400 VRKQEAHDRRKKLKSN 415
Score = 202 bits (515), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 155/255 (60%), Gaps = 10/255 (3%)
Query: 438 VAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSW 497
+ ++V+L EPGY +RYY KF + ++I ++KDV+ YVEG+ WV YYYQ SW
Sbjct: 582 IDTDESVRLYEPGYHDRYYQHKFHVP-AKDIPALQKDVIRCYVEGISWVLLYYYQGCASW 640
Query: 498 QWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDP 557
W+YPYHYAPFA D K++ +L+I F LGEPF P++QLM LPAAS ALPE +R LM+DP
Sbjct: 641 TWYYPYHYAPFAQDFKNIKNLDIHFDLGEPFLPYEQLMSVLPAASGHALPEIFRPLMSDP 700
Query: 558 SSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVML 617
+S I FYP +F +DMNGK+ AWQG+ LPFIDE LL+ ++ L++ E RN
Sbjct: 701 NSEIIDFYPEEFPVDMNGKKMAWQGIALLPFIDETRLLKTVREQYSKLSDSEKARNVRKK 760
Query: 618 DLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERN-GLRSII 676
D L + ++ Y L+ + + P + + + G++G++ E L S +
Sbjct: 761 DALLISNKNVNYD---LFMKNLYGENPVNVIEFR---HFKSGLSGFVTQAEEGFELNSKL 814
Query: 677 PSPVK--GLPDIERN 689
P+ GLPD+ N
Sbjct: 815 ICPINGGGLPDLSTN 829
>sp|Q6C961|XRN2_YARLI 5'-3' exoribonuclease 2 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAT1 PE=3 SV=3
Length = 1010
Score = 363 bits (933), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 210/469 (44%), Positives = 284/469 (60%), Gaps = 57/469 (12%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQ-VDGEGVARPVDVSKPNPNGMEFDNLYLDMNGI 59
MGVP YR L+ + P + DV+E++ VDGE + D S PNPNG E DNLYLDMNGI
Sbjct: 1 MGVPGLYRHLSQKCPKIVSDVIEDETTIVDGEEIP-GSDYSAPNPNG-ELDNLYLDMNGI 58
Query: 60 IHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRR 119
+HPC HP+G+ AP S D++ ++F Y + + + RPRK+L +AIDGVAPRAKMNQQR RR
Sbjct: 59 VHPCTHPEGEEAPPSEDEMLLAVFKYTERVLNVCRPRKVLMMAIDGVAPRAKMNQQRARR 118
Query: 120 FRAAKDAA-EAEA--EEERLRKEFE-----EAGKLLSA---------KEKPETCDSNVIT 162
FR+AKDAA EAE+ E E K E E GK L KP DSN IT
Sbjct: 119 FRSAKDAAIEAESTLESELKAKTIELQSSGEKGKSLETILDEFKQGLVNKPGKWDSNAIT 178
Query: 163 PGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGF 222
PGT FM L+AAL+Y++ +LN PGW+ KV++SDA VPGEGEHKIM +IR QR P +
Sbjct: 179 PGTPFMEKLAAALRYWVGYKLNTEPGWRDLKVVISDATVPGEGEHKIMEFIRSQRGDPTY 238
Query: 223 DPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKP 282
+ NT HC+YGLDADLI L LATHE F +LRE + +Q K GH
Sbjct: 239 NANTSHCIYGLDADLIFLGLATHEPKFKLLREDVF---RQNKT-----AGH--------- 281
Query: 283 GDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNP--PFPINFERIVDDFVFLC 340
KK + +LNI +LREYL+ +L +P P + ER +DD+VFLC
Sbjct: 282 ---------------QKKPFIWLNIDILREYLREDLRFTHPQTKIPFDLERAIDDWVFLC 326
Query: 341 FFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVY 400
FFVGNDFLPH+P ++R+G+IN+L++ ++ T Y+T G V L + + +++ A
Sbjct: 327 FFVGNDFLPHLPACDVRDGSINVLVNQWKNGMTRWKDYITCDGHVNLAQAQDLLKNFATQ 386
Query: 401 EDQIF--QKRTRIQ-QAYEYNEAMKLNARRESSEELLQAPVAVADTVKL 446
E +I Q++ R++ + + N+A K A R+S + Q A +++ L
Sbjct: 387 EQRILVHQEQDRVEYEKSQANKAAKQQAHRDSKKLRQQGEQAALESMPL 435
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 118/186 (63%), Gaps = 1/186 (0%)
Query: 438 VAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSW 497
AD V+ + GY ERYY +KF + +E+D +++ V +Y++G+CWV YYY SW
Sbjct: 535 TGYADHVQFHKSGYTERYYMNKFH-AKEDEVDNLRRQVAEEYMKGVCWVLMYYYHGCQSW 593
Query: 498 QWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDP 557
WFYPYHYAP A D +S++++ F PFRP++QLM LPAAS LP +R LM++
Sbjct: 594 SWFYPYHYAPLAGDFDQISNMKVEFGESAPFRPYEQLMSVLPAASGHNLPAVFRPLMSEE 653
Query: 558 SSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVML 617
+SPI +YP +FQ+D+NGK+ W+ VV LPFI+ LL + LT EE RN++
Sbjct: 654 NSPIIDYYPENFQLDLNGKKQEWKAVVLLPFINADHLLEHVQAKYTELTPEEKDRNTLRE 713
Query: 618 DLLYVH 623
+++ H
Sbjct: 714 EIVIFH 719
>sp|P40383|XRN1_SCHPO 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo2 PE=1 SV=1
Length = 1328
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/410 (41%), Positives = 239/410 (58%), Gaps = 63/410 (15%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MG+P F+RW+++RYPL ++E D EFDNLYLDMNGI+
Sbjct: 1 MGIPKFFRWMSERYPL-CSQLIEND-------------------RIPEFDNLYLDMNGIL 40
Query: 61 HPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTR 118
H C H D P ++++ +IF+YI+H+F ++P+KLLY+A+DG APRAKMNQQR+R
Sbjct: 41 HNCTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDGCAPRAKMNQQRSR 100
Query: 119 RFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYF 178
RFR AKDA +A + ER ++F E E DSN ITPGT FM +S L YF
Sbjct: 101 RFRTAKDAHDARLKAERNGEDFPE-----------EQFDSNCITPGTTFMERVSRQLYYF 149
Query: 179 IQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
I ++ WQ +VI S + PGEGEHKIM YIR Q+ P ++PNTRHCLYGLDADLI
Sbjct: 150 IHKKVTNDSQWQNIEVIFSGHDCPGEGEHKIMEYIRTQKAQPSYNPNTRHCLYGLDADLI 209
Query: 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIH 298
ML L +H+ HF +LRE +T PA N + +
Sbjct: 210 MLGLLSHDPHFCLLREEVTF--------------------------GPASRNRSKE--LA 241
Query: 299 KKKYQFLNIWVLREYLQYELDIPNPPFPINF--ERIVDDFVFLCFFVGNDFLPHMPTLEI 356
+K+ L++ +LREYL++E F + E+I+DDF+ L FFVGNDFLPH+P L I
Sbjct: 242 HQKFYLLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLHI 301
Query: 357 REGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQ 406
EGA+ L+ +Y++ + GGY+ + G + + R+E + + +E +IF+
Sbjct: 302 NEGALALMFSIYKKVMPSAGGYINEKGVINMARLELILLELENFEKEIFK 351
Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 102/164 (62%), Gaps = 2/164 (1%)
Query: 451 YKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
+K+ YY K S +E + K + +YVEGL WV YYY+ SW W+Y YH+AP S
Sbjct: 496 WKDDYYRSKVGFSYYDE--EALKAMAERYVEGLQWVLFYYYRGCQSWGWYYNYHFAPKIS 553
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQ 570
D+ D++I F +G PFRPF+QLM LPA S + +P +R+LM + SPI FYP +F
Sbjct: 554 DVLKGLDVKIDFKMGTPFRPFEQLMAVLPARSQALVPPCFRDLMVNSESPIIDFYPENFA 613
Query: 571 IDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNS 614
+D NGK +W+ VV +PFIDE L+ + FLTEEE RNS
Sbjct: 614 LDQNGKTASWEAVVIIPFIDETRLIDALASKDKFLTEEERKRNS 657
>sp|P22147|XRN1_YEAST 5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=XRN1 PE=1 SV=1
Length = 1528
Score = 286 bits (731), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/411 (38%), Positives = 237/411 (57%), Gaps = 63/411 (15%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MG+P F+R++++R+P+ I+ ++E G P EFDNLYLDMN I+
Sbjct: 1 MGIPKFFRYISERWPM-ILQLIE--------GTQIP-----------EFDNLYLDMNSIL 40
Query: 61 HPCFH--PDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTR 118
H C H D + ++VF I YIDH+F ++P+K+ Y+AIDGVAPRAKMNQQR R
Sbjct: 41 HNCTHGNDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDGVAPRAKMNQQRAR 100
Query: 119 RFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYF 178
RFR A DA +A L+K E ++ K E DSN ITPGT+FMA L+ LQYF
Sbjct: 101 RFRTAMDAEKA------LKKAIENGDEI----PKGEPFDSNSITPGTEFMAKLTKNLQYF 150
Query: 179 IQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
I +++ W+ ++I S VPGEGEHKIM++IR ++ F+ NTRHC+YGLDADLI
Sbjct: 151 IHDKISNDSKWREVQIIFSGHEVPGEGEHKIMNFIRHLKSQKDFNQNTRHCIYGLDADLI 210
Query: 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIH 298
ML L+TH HF++LRE +T G +E +
Sbjct: 211 MLGLSTHGPHFALLREEVTF-------------GRRNSEKKS----------------LE 241
Query: 299 KKKYQFLNIWVLREYLQYEL-DIPNP-PFPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356
+ + L++ +LREY++ E +I + F NFERI+DDF+ + F +GNDFLP++P L +
Sbjct: 242 HQNFYLLHLSLLREYMELEFKEIADEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLHL 301
Query: 357 REGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK 407
+GA +L+ ++ GY+ + G++ L R+ ++ ++ +E F+K
Sbjct: 302 NKGAFPVLLQTFKEALLHTDGYINEHGKINLKRLGVWLNYLSQFELLNFEK 352
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Query: 451 YKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
+K YY DK + + E +KV+ D+ YVEGL WV YYY+ SW W+YP+HYAP S
Sbjct: 511 WKHEYYHDKLKFTTDSE-EKVR-DLAKDYVEGLQWVLYYYYRGCPSWSWYYPHHYAPRIS 568
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQ 570
DL D +I F L +PF PF QLM LP S + +P +R LM D SPI+ FYP + Q
Sbjct: 569 DLAKGLDQDIEFDLSKPFTPFQQLMAVLPERSKNLIPPAFRPLMYDEQSPIHDFYPAEVQ 628
Query: 571 IDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLY 621
+D NGK W+ VV + F+DEK L+ + L+ EE RN DL+Y
Sbjct: 629 LDKNGKTADWEAVVLISFVDEKRLIEAMQPYLRKLSPEEKTRNQFGKDLIY 679
>sp|Q197A1|EX0N_IIV3 Putative exonuclease 059L OS=Invertebrate iridescent virus 3
GN=IIV3-059L PE=3 SV=1
Length = 560
Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 175/647 (27%), Positives = 265/647 (40%), Gaps = 133/647 (20%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MG+ F+RW D +P ++ ++ + + D +P L LD+NGII
Sbjct: 1 MGIKYFFRWYKDSFPNTVTKYSTKNHK-------KSQDTDEPFL-------LLLDLNGII 46
Query: 61 HPC---------FHPDG--KPAPTSYDD-----VFKSIFDYIDHIFLLVRPRKLLYLAID 104
H F P K +P Y V++ + ID + LV PR+L+ L ID
Sbjct: 47 HTSCQKIYKYGSFEPKNLLKKSPPVYKGEKDVLVYEDVLASIDSLVALVEPRELV-LCID 105
Query: 105 GVAPRAKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPG 164
GVAP +K QQR RRF K + G DSN I+PG
Sbjct: 106 GVAPVSKQIQQRQRRFITHK----------------TDGG-----------FDSNCISPG 138
Query: 165 TQFMAVLSAALQYFIQARLNQIPGW-QFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFD 223
T+F+ L L+ ++++L + W + + D+ VPGEGEHK+ ++R + D
Sbjct: 139 TEFLFQLGLYLKTHLESKLEK--EWLNVSTIYFMDSLVPGEGEHKLFDFLRTHQT-RIVD 195
Query: 224 PNTRHCLYGLDADLIMLSLATH-----EIHFSILREVITLPGQQEKCFVCGQVGHLAAEC 278
+ G DADLIMLSL E SILRE
Sbjct: 196 TKFNIVVVGNDADLIMLSLLVSVLFIKENPLSILRE------------------------ 231
Query: 279 HGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPF-PINFERIVDDFV 337
D K Y ++I +L++ + P F P +FE ++ DFV
Sbjct: 232 ---------------DLTSKKLDYLLVDINLLKDTIYQNASRDKPRFTPYDFEFVICDFV 276
Query: 338 FLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSV 397
+CF +GNDFLP +P I +G +++L+ Y T AG + V KF
Sbjct: 277 VMCFMIGNDFLPSVPLFNIYDGGLDMLLKY----------YFTTAGYITCRSVSKFYGRN 326
Query: 398 AVYEDQIFQKRTRIQQAYEYNEAMKLN--ARRESSEELLQAPVAVADTVKLGEPGYKERY 455
+ + + + Q Y + A +N A P + D V E E
Sbjct: 327 KGKKMEKIKINFKHLQPYLHYIATAVNPQAIEHYRNRNYGYPNVLLDVVLKKEAMLTEDV 386
Query: 456 YADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYY-YQDVC-SWQWFYPYHYAPFASDLK 513
+ +P K+ K +V Y+E + W+ YY Y VC W +YP +AP A DL
Sbjct: 387 TTHYLKAYSPHH--KITKSLVHSYLEEIKWIFNYYAYGAVCIDWNMYYPSQFAPTALDL- 443
Query: 514 DLSDLEITFFLGEPFR------PFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPP 567
+ L T G R PF QL+ LP SS LP+ L+ + +P
Sbjct: 444 SFATLTFTSQSGLKERKKCLTDPFFQLLCILPPHSSDLLPDPLNKLLV---QKLVDGHPI 500
Query: 568 DFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNS 614
+ ++D +GK W+ + LP +D +L+ ++E+L RN+
Sbjct: 501 EIKMDYDGKLNEWEAIPILPPLDYNKILKMYNDHIHQCSKEDLKRNT 547
>sp|Q9QSK5|EXON_IIV6 Putative exonuclease 012L OS=Invertebrate iridescent virus 6
GN=IIV6-012L PE=3 SV=1
Length = 624
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 172/695 (24%), Positives = 276/695 (39%), Gaps = 178/695 (25%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MG+ F++WL + SI + D N D L +DMNGII
Sbjct: 1 MGIKYFFKWLKTNHSESIKCIDRHD-------------------NSQCIDVLLIDMNGII 41
Query: 61 HPC------FHPDGKPAPTSYDD-VFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMN 113
H + P + D V+ + ID + + +P++L+ L IDGVAPR+K
Sbjct: 42 HNSAQEVYGYGSFSFPKENACDKKVYSLVCRQIDRMVIQFKPKELI-LCIDGVAPRSKQI 100
Query: 114 QQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSA 173
QQR RRF AA D RK+ K DSN I+PGT+FM L
Sbjct: 101 QQRQRRFLAAHD-----------RKKPGTEFNFDCNKGNTSKFDSNSISPGTEFMHNLGR 149
Query: 174 ALQYFIQA----------------------------RLNQIPGWQFTKVILSDANVPGEG 205
+ I+ +++ W V+ ++ V GEG
Sbjct: 150 YIDIHIKKKQKPAFTGRETTDAPQNNWRNKDQSWRQKVDDTAEWSNLTVVFANDKVSGEG 209
Query: 206 EHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKC 265
EHK++ YIR N +C+YG DADLIMLS++ + + ++ + L +
Sbjct: 210 EHKLLDYIRKYGN-----SYYTYCIYGSDADLIMLSMSA--LTTTAIKNIYVLRDE---- 258
Query: 266 FVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPF 325
+ P Y +NI + L ++ N
Sbjct: 259 -------------YKSPN------------------YLLINIPNFVKNLIKDVK-SNWTD 286
Query: 326 PINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEV 385
++ +R ++DF+F+CF VGNDFLPH+P++EI I ++ Y T Y+TD
Sbjct: 287 KLDEKRFINDFIFMCFMVGNDFLPHIPSIEIMTNGIESMLAFY----TKNKNYITDNNG- 341
Query: 386 LLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNEAMKLNARRESSEELLQAPVAVADTVK 445
L + + + + +D +++ + +E + + ESS L+ V
Sbjct: 342 -LGEIFNYESLLPILKDLEGLEQSLCNEKVNNSEYFR-DDLLESSSFLVTNEFGQQKCVN 399
Query: 446 LGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFYPYHY 505
+ E Y+E+Y FE S+ + L Y+EG+ WV YY V W+W Y Y Y
Sbjct: 400 INE--YREKYMKKHFESSS---------EASLMYLEGMQWVLSYYTLKVPDWEWSYKYDY 448
Query: 506 AP-FASDLKDLSDLEITFFLGE-----PFRPFDQLMGTLPAASSSALPEKY--------- 550
AP S ++ +S +I + P + + T A SSS + +
Sbjct: 449 APNLTSIIEAMSFKQIGGTSKKEKNQYKLFPVNSVNSTEVATSSSGFQKSFSMVFQNSLQ 508
Query: 551 -----RNLMTDPSS----PIYK---------------------------FYPPDFQIDMN 574
R+ T SS P ++ + P + ID
Sbjct: 509 NTKDWRDKKTKTSSDAIPPFHQLLFILPPDSSDLLPYPLCEALTNELKIYAPKELIIDRA 568
Query: 575 GKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEE 609
GKR W+G+V LP +D+K++ K + ++TE++
Sbjct: 569 GKRQEWEGIVLLPKLDQKVVTECYLKYKPYVTEKK 603
>sp|P23252|CR2_HORVU Cold-regulated protein 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1
Length = 202
Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 626 HPLYQQITLYCQLYHQLPPQDR--FAWEIDVNASGGMNGYIWLCERNGLRSIIPSPVKGL 683
HP+ I + L +DR ++D +ASGGMNGYI LC + + SPV GL
Sbjct: 3 HPISPYIYSLSSKFGHLADKDRNEIKEQLDPSASGGMNGYISLCGGDPSPLVFRSPVDGL 62
Query: 684 PDIERNQAM 692
DI NQ +
Sbjct: 63 EDIMDNQVI 71
>sp|Q5UQ94|YR528_MIMIV Putative 5'-3' exonuclease R528 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R528 PE=1 SV=1
Length = 621
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 52/213 (24%)
Query: 159 NVITPGTQFMAVLSAALQY-FIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQR 217
N ITPGT FM L L+ IQ+ LN Q +I++D GEGE KI++Y+
Sbjct: 37 NKITPGTAFMNKLVNYLKSDQIQSLLN--TNRQDMNIIITDMYEVGEGEKKIVNYVH--- 91
Query: 218 NLPGFDPNTRHC--LYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLA 275
+ NT +Y DAD+I+L + + +LR
Sbjct: 92 ---KYLHNTSDTVMVYSPDADVILLCMLMPVSNLYMLRH--------------------- 127
Query: 276 AECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYEL----DIPNPPFPINFER 331
N + Y +NI +L+ + Y + D F + +
Sbjct: 128 --------------NQETSKKFKRNIYDLINIKMLKNNISYYINNNPDFSRENFIV--DN 171
Query: 332 IVDDFVFLCFFVGNDFLPHMPTLEIREGAINLL 364
I D V + GNDF+P + T+ +++G N++
Sbjct: 172 INYDLVCISTLFGNDFVPKIETINVKKGFQNIM 204
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 465 PEEIDKVKKDVVLKYVEGLCWVCRYYYQD-VCSWQWFYPYHYAPFASDLKD-LSDLEITF 522
EE +++ +D Y EGL WV YY+ D +W+Y + AP + L L + +
Sbjct: 435 TEEANEIMRD----YTEGLLWVFDYYFNDKTYVNRWYYQHEKAPLLTHLSMYLDGINHDY 490
Query: 523 F--------------LGEPFRPFDQLMGTLPAASS--SALPEKYRNLMT-DPSSPIYKFY 565
F + F P +QL+ P LP YR+ +T D P K Y
Sbjct: 491 FNDLLSGLKKYRVKNIKNFFNPVEQLIYVSPMIPGIIKLLPSNYRSYITSDHLDPFLKTY 550
Query: 566 PPDFQ 570
D +
Sbjct: 551 FIDVE 555
>sp|Q9CR51|VATG1_MOUSE V-type proton ATPase subunit G 1 OS=Mus musculus GN=Atp6v1g1 PE=2
SV=3
Length = 118
Score = 38.5 bits (88), Expect = 0.19, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 110 AKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMA 169
++ +++ RR + AK+ A+AE E+ RL++E E K +A +C S V + M
Sbjct: 23 SEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSHGSCSSEVEKETREKMT 82
Query: 170 VLSAALQYFIQAR 182
VL YF Q R
Sbjct: 83 VLQ---NYFEQNR 92
>sp|P79251|VATG1_BOVIN V-type proton ATPase subunit G 1 OS=Bos taurus GN=ATP6V1G1 PE=1
SV=3
Length = 118
Score = 37.7 bits (86), Expect = 0.34, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 110 AKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMA 169
++ +++ RR + AK+ A+AE E+ RL++E E K +A +C + V + M
Sbjct: 23 SEARKRKNRRLKQAKEEAQAEVEQYRLQREKEFKAKEAAALGSHGSCSTEVEKDTQEKMT 82
Query: 170 VLSAALQYFIQAR 182
+L YF Q R
Sbjct: 83 ILQT---YFQQNR 92
>sp|Q8N567|ZCHC9_HUMAN Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens
GN=ZCCHC9 PE=2 SV=2
Length = 271
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 264 KCFVCGQVGHLAAECHGKPGDNPADWNGV----------DDTPIHKKKYQFLNI--WVLR 311
KCFVCG++GHL+ C P AD G D P + + + + W
Sbjct: 185 KCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGRWAKG 244
Query: 312 EYLQYE--LDIPNPPFP 326
YE LD+P P P
Sbjct: 245 MSADYEEILDVPKPQKP 261
>sp|O75348|VATG1_HUMAN V-type proton ATPase subunit G 1 OS=Homo sapiens GN=ATP6V1G1 PE=1
SV=3
Length = 118
Score = 37.4 bits (85), Expect = 0.41, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 110 AKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMA 169
++ +++ RR + AK+ A+AE E+ RL++E E K +A +C + V + M
Sbjct: 23 SEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSRGSCSTEVEKETQEKMT 82
Query: 170 VLSAALQYFIQAR 182
+L YF Q R
Sbjct: 83 ILQT---YFRQNR 92
>sp|Q5AED9|BBP_CANAL Branchpoint-bridging protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=BBP PE=3 SV=1
Length = 455
Score = 37.0 bits (84), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 265 CFVCGQVGHLAAECHGKPGDNPADWNGVDD-TPIHKK 300
C +CG +GH+A +C G P D N ++ T I+KK
Sbjct: 294 CKICGNIGHIARDCKQNNGKRPLDDNAENEPTTINKK 330
>sp|Q54VW7|GACGG_DICDI Rho GTPase-activating protein gacGG OS=Dictyostelium discoideum
GN=gacGG PE=3 SV=1
Length = 1203
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 525 GEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPI---YKFYPPDFQIDMNGKRFA-W 580
P F G L ++ L EK L+ P PI K P F++D N F
Sbjct: 854 SSPALTFSNSSGNL--IETTKLYEKVLALILSPVLPIGSIMKVLPSIFELDTNNDLFIRL 911
Query: 581 QGVVKL---------PFIDEKL-LLRQTKKLEVFLTE-EELFRN--SVMLDLLYVHPQHP 627
+KL FI ++L ++++ + F+ + ++L N SV+ DLLYV
Sbjct: 912 LTTIKLVRTVRSNLDEFIQQQLVMIKEINQCSQFIDKAKQLNENVESVITDLLYVDESIK 971
Query: 628 LYQQITLYCQLYHQLPPQDRFAWEIDV 654
++Q+ QLY Q Q F W D+
Sbjct: 972 YWKQVQPLIQLYSQ-QIQSYFKWWFDL 997
>sp|C1F924|GRPE_ACIC5 Protein GrpE OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM
11244 / JCM 7670) GN=grpE PE=3 SV=1
Length = 205
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 102 AIDGVAPRAKMNQQRTRRFRAAKDAAEAEAEE-----ERLRKEFEEAGKLLSAKEKPETC 156
A+ P+A++ Q+ R RA +DAA A+ E RL+ EF+ A K AKE+ E
Sbjct: 34 ALPAAEPQAQILQEEVERLRAERDAALADREAFQDRLARLQAEFDNARK-REAKERSEFR 92
Query: 157 DSNVITPGTQFMAVL 171
D +V + F+ VL
Sbjct: 93 DYSVASTAEAFLPVL 107
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 34.3 bits (77), Expect = 3.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 257 TLPGQQEKCFVCGQVGHLAAECHGKPGDNP 286
T P Q++ C+ CG GHL +C P NP
Sbjct: 52 TEPQQEKTCYACGTAGHLVRDCPSSP--NP 79
>sp|Q4X0I7|SPC24_ASPFU Probable kinetochore protein spc24 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=spc24 PE=3 SV=2
Length = 200
Score = 34.3 bits (77), Expect = 3.8, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 104 DGVAPRAKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKE 151
D A+M + T++FR AK A E E E ERL E E + L+ E
Sbjct: 74 DSAKHAAQMVELDTKKFRIAKAATELEIESERLEGELEMLKERLAELE 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 281,796,909
Number of Sequences: 539616
Number of extensions: 12982631
Number of successful extensions: 32933
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 32674
Number of HSP's gapped (non-prelim): 107
length of query: 692
length of database: 191,569,459
effective HSP length: 125
effective length of query: 567
effective length of database: 124,117,459
effective search space: 70374599253
effective search space used: 70374599253
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)