Query 005531
Match_columns 692
No_of_seqs 249 out of 535
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 18:50:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005531.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2037-2040//hhsearch_pdb/005531hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fqd_A Protein DHP1, 5'-3' exo 1.0 1 1 1823.1 59.1 674 1-692 4-837 (899)
2 3pie_A 5'->3' exoribonuclease 1.0 1 1 1584.6 53.6 565 1-626 1-664 (1155)
3 2y35_A LD22664P; hydrolase-DNA 1.0 1 1 1498.9 47.6 562 1-626 1-586 (1140)
4 1b43_A Protein (FEN-1); nuclea 1.0 1 1 80.9 8.7 227 51-368 23-257 (340)
5 1a76_A Flap endonuclease-1 pro 1.0 1 1 72.3 11.2 199 50-356 22-235 (326)
6 1rxw_A Flap structure-specific 1.0 1 1 68.3 17.0 217 51-368 23-255 (336)
7 3ory_A Flap endonuclease 1; hy 1.0 1 1 65.2 11.2 223 51-369 37-272 (363)
8 3qe9_Y Exonuclease 1; exonucle 1.0 1 1 62.8 16.5 172 1-241 1-178 (352)
9 1ul1_X Flap endonuclease-1; pr 1.0 1 1 59.5 11.5 230 2-356 1-242 (379)
10 2izo_A FEN1, flap structure-sp 1.0 1 1 54.9 12.8 222 51-368 20-254 (346)
No 1
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=1823.09 Aligned_cols=674 Identities=46% Similarity=0.804 Sum_probs=607.2
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 96114889999538986212445798558999644778889999986568078622343233215789999999999999
Q 005531 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFK 80 (692)
Q Consensus 1 MGVP~ffrWL~~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpn~~e~DnLYlDmNgIIH~c~h~~~~~~p~te~e~~~ 80 (692)
||||+|||||++|||+|+++|+|+.|..+.+|..+|+|.++|||||.+|||||||||||||+|+|+++.+.|.||++||.
T Consensus 4 MGVP~ffRWLs~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpng~e~DnLYlDmNgIIH~c~h~~~~~~~~te~e~~~ 83 (899)
T 3fqd_A 4 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMV 83 (899)
T ss_dssp CCHHHHHHHHHHHCGGGEEECCCCCCEECTTSCEECCCTTSCCTTSSCEEEEEEETHHHHHHHHSCSSSCCCCSHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 65479999999777763322014565304577626632247898875221478813102244217778888889999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCC
Q ss_conf 999999998744054306887632888414557988744434998999999999999999980765687-8888878775
Q 005531 81 SIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSA-KEKPETCDSN 159 (692)
Q Consensus 81 ~if~yid~lv~~vrPrklLyiAiDGVAPrAKmnQQRsRRfrsa~e~~~~~~~~~~l~~~~~~eg~~~~~-~~~~~~fDsN 159 (692)
+||+|||+||++|||||+||||||||||||||||||+||||+|++++++.++.+++++++.++|...+. ....+.||||
T Consensus 84 ~If~yid~l~~~vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fDsN 163 (899)
T 3fqd_A 84 AVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSN 163 (899)
T ss_dssp HHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHSCCCCCGG
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99999999997717331588850487871278999998887655456667789999999996699785322345677757
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHH
Q ss_conf 31355189999999999999999821999864189992999999714689999998531999999982899806813899
Q 005531 160 VITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239 (692)
Q Consensus 160 ~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPGEGEhKIm~fIR~qr~~p~ydpn~~H~IyG~DADLIm 239 (692)
||||||+||.+|+.+|+|||+.|+++||+|++++||+||++||||||||||+|||+||++|+|||||+|||||+||||||
T Consensus 164 ~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLIm 243 (899)
T 3fqd_A 164 CITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIM 243 (899)
T ss_dssp GSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHH
T ss_conf 51886299999999999999998526845245369980898899507999999999722788899981899756710767
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHC
Q ss_conf 77303772079953011478887533213556752000169999999998998887656675189745999999996608
Q 005531 240 LSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELD 319 (692)
Q Consensus 240 L~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~vLREyL~~e~~ 319 (692)
|||+||||||+||||+|+++. +|.||.+.+|+|+......+ .. ......++|+||||++|||||..||.
T Consensus 244 L~LatHep~f~ILRE~v~~~~--------~q~~~~~~~~~~~~k~~~~~--~~-~~~~~~~~f~~l~i~iLREYL~~E~~ 312 (899)
T 3fqd_A 244 LGLATHEPHFRVLREDVFFQQ--------GSTKKTKEERLGIKRLDDVS--ET-NKVPVKKPFIWLNVSILREYLEVELY 312 (899)
T ss_dssp HHHHTTCSSEEEEEECCC-----------------CTTTTTCCBTTC-------------CCEEEEEHHHHHHHHHHHHC
T ss_pred HHHHCCCCCEEEEEEECCCCC--------CCCCCCHHHHCCCCCCCCCC--CC-CCCCCCCCEEEEEHHHHHHHHHHHHC
T ss_conf 755406773699863112476--------75665043312433445432--22-35555686289768999999999844
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHH
Q ss_conf 99999987313568789987643147778999964335005999999999985114994233882326999999999998
Q 005531 320 IPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAV 399 (692)
Q Consensus 320 ~~~~~~~~d~eriIDDfVfLcfl~GNDFLPhlpsl~I~egaid~L~~~Yk~~l~~~~gYLt~~g~inl~~l~~~l~~l~~ 399 (692)
+++++|++|+||+||||||||||||||||||||+|+|++|||+.|+.+||+.|+++|||||++|+||++||+.||+.||+
T Consensus 313 ~~~~~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I~egaid~L~~~Yk~~l~~~~gYlt~~G~inl~rl~~~l~~L~~ 392 (899)
T 3fqd_A 313 VPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERLTEIWRASLPHMGGYLTLDGSVNLARAEVILSAVGN 392 (899)
T ss_dssp CTTCSSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCGGGTHHHHHHHHHHHHHHHHSSCSEETTEECHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEECHHHHHHHHHHHHH
T ss_conf 66888872155534444555675376547999856757784999999999998873885503999859999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------------------------------HH---HH-----------
Q ss_conf 699999999999999997899-----------------------------------------87---86-----------
Q 005531 400 YEDQIFQKRTRIQQAYEYNEA-----------------------------------------MK---LN----------- 424 (692)
Q Consensus 400 ~E~~if~~r~~~~~~~~~~~~-----------------------------------------~~---~~----------- 424 (692)
.|++||++|.+.+++...+.. .+ ..
T Consensus 393 ~E~~iF~~r~~~e~~~~~~~krr~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (899)
T 3fqd_A 393 QEDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDL 472 (899)
T ss_dssp THHHHHHHHHHHHTTTC---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999999878777766665431023322222234553211223322123321000235555567544554
Q ss_pred ---------------------HHH--C---C-----------H-HHHH--------------------------------
Q ss_conf ---------------------420--1---2-----------0-4431--------------------------------
Q 005531 425 ---------------------ARR--E---S-----------S-EELL-------------------------------- 434 (692)
Q Consensus 425 ---------------------~r~--~---~-----------~-~~~~-------------------------------- 434 (692)
+|. . + + +..+
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~n~~~a~~lk~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 552 (899)
T 3fqd_A 473 VNLSEKTSNRSLGATNRELINNRAANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIE 552 (899)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45432112221012213454211033310234332201245358899998741135434454331000111000122211
Q ss_pred ----------------------CC---CCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------------------18---50000123469953577688875099992567799999999999879998552
Q 005531 435 ----------------------QA---PVAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRY 489 (692)
Q Consensus 435 ----------------------~~---~~~~~d~v~l~e~~~k~rYY~~Kf~~~~~~~~~~~~~~v~~~Y~eGL~Wvl~Y 489 (692)
.. ..+..|.+++|++|||+|||++||+++..+ ++++++||++|+|||||||+|
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~l~e~g~K~rYY~~KF~~~~~d--~e~~~~v~~~YvEGL~WVL~Y 630 (899)
T 3fqd_A 553 SSTPVVHPIDTKVSNVGQKRKAPDSTEENENTDTVRLYEPGYRERYYEQKFHISPDE--PEKIREAVKHYVHGLCWVLLY 630 (899)
T ss_dssp --------------------------------CCSCTTSTTHHHHHHHHTSCCCTTC--THHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 124311221011011233455555433245024466436526788899855998898--999999999988888889987
Q ss_pred HCCCCCCCCCCCCCCCCCCHHCHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 11576765555677988310001102684122248999994878551378888898507742001799996632488862
Q 005531 490 YYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDF 569 (692)
Q Consensus 490 Yy~G~~SW~WyYPyHYAPfasDl~~l~~~~i~F~~g~Pf~P~eQLm~VLP~~S~~~LP~~~~~Lm~~~~Spi~dfYP~~f 569 (692)
||+|||||+||||||||||||||+++.+++++|++|+||+|||||||||||+|+++||++||+||++|+|||+||||++|
T Consensus 631 YYqGc~SW~WyYPYHYAPfaSD~~~~~~~~i~Fe~G~PF~PfEQLMaVLPaaS~~~LP~~y~~LMtdp~SpIiDFYP~dF 710 (899)
T 3fqd_A 631 YYQGCPSWTWYYPYHYAPFAADFKDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLMTDENSEIIDFYPENF 710 (899)
T ss_dssp HHTCCSCSSCCCCCSSCCCGGGCCSCTTCCCCCCCCCCCCHHHHHHHHCCGGGGGGSCHHHHHHHHCTTCTTGGGCCSCC
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCHHHHHHHHCCHHHHCCCCHHHHHHHCCCCCCCHHHCCCCC
T ss_conf 70898787666746556268888606467400478998985998886367756371619899873699971065495430
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCCCCHHHHH-HHHHHCCCCCCCCCC
Q ss_conf 1147897220211201467796899999854106999989830468995899829996478999-985321689989986
Q 005531 570 QIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLYVHPQHPLYQQIT-LYCQLYHQLPPQDRF 648 (692)
Q Consensus 570 ~iD~nGk~~~WqgV~lLPFIDe~~Ll~a~~~~~~~Lt~eE~~RN~~g~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 648 (692)
+||||||+++||||||||||||+|||+|++++++.||+||++||++|.++||++++|++++.+. .+|.+.. ...
T Consensus 711 eiDmNGKk~~WqgVvlLPFIDE~RLL~A~~~~~~~LT~eEk~RN~~G~~~lf~~~~~~l~~~~~~~~y~~~~-----~~~ 785 (899)
T 3fqd_A 711 TIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNEDGSTLLFISEHHPMFSELVKQLYSKKR-----QGK 785 (899)
T ss_dssp CEECSSSSCTTSSEECCCCCCHHHHHHHHHTTGGGSCHHHHHTTSCCCCEEEEETTSTTHHHHHHHHTSSSC-----SSS
T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCC-----CCC
T ss_conf 236889835501378668568899999999865529999997546798679986898408899998503556-----675
Q ss_pred CEECCCCCCCCCCEEEECCCCCCCCCCCCCCCC--CCCC------CCCCCCC
Q ss_conf 311057766882006963568899963478899--9989------8668789
Q 005531 649 AWEIDVNASGGMNGYIWLCERNGLRSIIPSPVK--GLPD------IERNQAM 692 (692)
Q Consensus 649 ~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~p~~--~~~~------~~~~~~~ 692 (692)
.+++||++|+||+|+|++++.+.+++++.||+. +||| |.+|++|
T Consensus 786 ~~~~~~~~s~gl~G~v~~~~~~~p~~~~~sP~~~~~~~~~~~~~~i~~n~~~ 837 (899)
T 3fqd_A 786 PLKLSGKMAHGLFGKVNTNDSVIPNVSVQCPIDVTSADALQKYGSIDDNQSI 837 (899)
T ss_dssp CEECCGGGGTTCCSEEEECTTSCSCCCBCCSSCCCSHHHHHHSCCBSSCCEE
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 3044800035763178847775888855189874679985456641588179
No 2
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=1.00 E-value=1 Score=1584.55 Aligned_cols=565 Identities=41% Similarity=0.769 Sum_probs=490.4
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCHHHH
Q ss_conf 9611488999953898621244579855899964477888999998656807862234323321578999--99999999
Q 005531 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKP--APTSYDDV 78 (692)
Q Consensus 1 MGVP~ffrWL~~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpn~~e~DnLYlDmNgIIH~c~h~~~~~--~p~te~e~ 78 (692)
||||+|||||++|||+|+..+ + +..+ ++|||||||||||||+|+|+++.+ .+.||++|
T Consensus 1 MGVP~ffrwl~~ryP~i~~~~-~--------~~~~-----------pe~DnLYlDmNgIIH~c~h~~~~~~~~~~te~e~ 60 (1155)
T 3pie_A 1 MGIPKFFHFISERWPQISQLI-D--------GSQI-----------PEFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEV 60 (1155)
T ss_pred CCHHHHHHHHHHHCCCHHHCC-C--------CCCC-----------CCCCEEEEECCCCEEEEECCCCCCCCCCCCHHHH
T ss_conf 975799999987685343104-6--------7878-----------7577689965521123016888865568899999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999998744054306887632888414557988744434998999999999999999980765687888887877
Q 005531 79 FKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDS 158 (692)
Q Consensus 79 ~~~if~yid~lv~~vrPrklLyiAiDGVAPrAKmnQQRsRRfrsa~e~~~~~~~~~~l~~~~~~eg~~~~~~~~~~~fDs 158 (692)
|.+||+|||+||++|||||+||||||||||||||||||+||||+|++++.+.. ...++|..++ +.+.|||
T Consensus 61 ~~~if~yid~l~~~vrPrkllyiAiDGVAPrAKmnqQR~RRfrsa~~~~~~~~-------~~~~~g~~~~---~~~~fds 130 (1155)
T 3pie_A 61 YSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQ-------KAIENGDELP---KGEPFDS 130 (1155)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCCCCCC---CCCCCCC
T ss_conf 99999999999976474248999824888706788989888776533157799-------9986187677---5556664
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHH
Q ss_conf 53135518999999999999999982199986418999299999971468999999853199999998289980681389
Q 005531 159 NVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238 (692)
Q Consensus 159 N~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPGEGEhKIm~fIR~qr~~p~ydpn~~H~IyG~DADLI 238 (692)
|||||||+||.+|+.+|+|||+.|+++||+|++++||+||++||||||||||+|||++|++|+||||++|||||+|||||
T Consensus 131 n~ITPGT~FM~~L~~~L~~~i~~k~~~d~~w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLI 210 (1155)
T 3pie_A 131 NAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLI 210 (1155)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHH
T ss_conf 61168848999999999999999710786746548999699989961899999999850279989998089964376388
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 97730377207995301147888753321355675200016999999999899888765667518974599999999660
Q 005531 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYEL 318 (692)
Q Consensus 239 mL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~vLREyL~~e~ 318 (692)
||||+||||||+||||++.+..+..+ + ..+..++|+|+||++|||||+.||
T Consensus 211 mL~L~thep~f~iLRe~v~f~~~~~~----------------~-------------~~~~~~~f~~l~i~~LREyL~~ef 261 (1155)
T 3pie_A 211 ILGLSTHDHHFCLLREEVTFGKRSSS----------------V-------------KTLETQNFFLLHLSILREYLALEF 261 (1155)
T ss_pred HHHHCCCCCCEEEEEECCCCCCCCCC----------------C-------------CCCCCCCEEEEEHHHHHHHHHHHH
T ss_conf 76640588747998500014766556----------------6-------------664558709998899999999999
Q ss_pred CC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHH
Q ss_conf 89--9999987313568789987643147778999964335005999999999985114994233882326999999999
Q 005531 319 DI--PNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQS 396 (692)
Q Consensus 319 ~~--~~~~~~~d~eriIDDfVfLcfl~GNDFLPhlpsl~I~egaid~L~~~Yk~~l~~~~gYLt~~g~inl~~l~~~l~~ 396 (692)
.. +.++|++|+||+||||||||||+|||||||||+|+|++|||+.|+.+|++.++++|||||++|+||++||+.||+.
T Consensus 262 ~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I~~g~i~~L~~~Yk~~l~~~~gYlt~~G~inl~rl~~~l~~ 341 (1155)
T 3pie_A 262 EEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKY 341 (1155)
T ss_pred HHHCCCCCCCCCHHHHHCCEEEEHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCEECHHHHHHHHHH
T ss_conf 86341568876576742462454064186258999856858881999999999988763883504989839999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----H--HHHHHHH----------HC---------------C-H-----H----HHHC
Q ss_conf 9986999999999999999978----9--9878642----------01---------------2-0-----4----4311
Q 005531 397 VAVYEDQIFQKRTRIQQAYEYN----E--AMKLNAR----------RE---------------S-S-----E----ELLQ 435 (692)
Q Consensus 397 l~~~E~~if~~r~~~~~~~~~~----~--~~~~~~r----------~~---------------~-~-----~----~~~~ 435 (692)
||++|+++|++|...++.+... . ..+.+.+ +. . . + ..+.
T Consensus 342 L~~~E~~~F~~~~~d~~~~~~k~~~~~~~~~~~r~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 421 (1155)
T 3pie_A 342 LSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTSELQDADFEIFPLE 421 (1155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999888765789887766532346677765413321115677665112202201334455555542224444567
Q ss_pred -----------------------------C------------C--CC-----------CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf -----------------------------8------------5--00-----------0012346995357768887509
Q 005531 436 -----------------------------A------------P--VA-----------VADTVKLGEPGYKERYYADKFE 461 (692)
Q Consensus 436 -----------------------------~------------~--~~-----------~~d~v~l~e~~~k~rYY~~Kf~ 461 (692)
. + ++ ..+.++.+.++||+|||++||+
T Consensus 422 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~k~rYY~~Kf~ 501 (1155)
T 3pie_A 422 DKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSINXXXXXXXXXXXXXXXXXXXIYSERFVEWKDQYYKDKLD 501 (1155)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 30234554899999987521122344555432100145555432111111111111110000000002478999998629
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCHHCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 99925677999999999998799985521157676555567798831000110268412224899999487855137888
Q 005531 462 ISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAA 541 (692)
Q Consensus 462 ~~~~~~~~~~~~~v~~~Y~eGL~Wvl~YYy~G~~SW~WyYPyHYAPfasDl~~l~~~~i~F~~g~Pf~P~eQLm~VLP~~ 541 (692)
++.. + .+.++++|++|+|||||||+|||+|||||+||||||||||||||+++.+++++|++|+||+|||||||||||+
T Consensus 502 ~~~~-~-~e~~~~v~~~YveGL~WVL~YYy~Gc~SW~WyYPYHYAPfasDl~~~~~~~i~F~~g~Pf~PfeQLm~VLP~~ 579 (1155)
T 3pie_A 502 FSIN-D-TDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPER 579 (1155)
T ss_pred CCCC-C-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCHH
T ss_conf 9868-8-9999999999888887689877189878665575556637889975415660553799998489985106865
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEE
Q ss_conf 88985077420017999966324888621147897220211201467796899999854106999989830468995899
Q 005531 542 SSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLY 621 (692)
Q Consensus 542 S~~~LP~~~~~Lm~~~~Spi~dfYP~~f~iD~nGk~~~WqgV~lLPFIDe~~Ll~a~~~~~~~Lt~eE~~RN~~g~~~l~ 621 (692)
|+++||++||+||+||+|||+||||++|+||||||+++||||||||||||+||++|++++++.||++|++||++|.+++|
T Consensus 580 S~~~LP~~~~~LM~d~~SpIidFYP~dF~iD~NGKk~~WqgVvlLPFIDe~rLl~a~~~~~~~Lt~eE~~RN~~g~~~lf 659 (1155)
T 3pie_A 580 SKNLIPVVYRPLMYDEHSPILDFYPNEVELDLNGKTADWEAVVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIF 659 (1155)
T ss_pred HHCCCCHHHHHHHCCCCCCHHHHCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEE
T ss_conf 64618686897634999825663953325658898044456897773798999999863136699999963567986799
Q ss_pred ECCCC
Q ss_conf 82999
Q 005531 622 VHPQH 626 (692)
Q Consensus 622 ~~~~~ 626 (692)
+++..
T Consensus 660 ~~~~~ 664 (1155)
T 3pie_A 660 IFNPQ 664 (1155)
T ss_pred EECCC
T ss_conf 95588
No 3
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=1498.94 Aligned_cols=562 Identities=42% Similarity=0.792 Sum_probs=483.4
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC--CCCHHHH
Q ss_conf 96114889999538986212445798558999644778889999986568078622343233215789999--9999999
Q 005531 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPA--PTSYDDV 78 (692)
Q Consensus 1 MGVP~ffrWL~~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpn~~e~DnLYlDmNgIIH~c~h~~~~~~--p~te~e~ 78 (692)
||||+|||||++|||.+...+.+. . .++|||||||||||||+|+|+++.+. +.+|++|
T Consensus 1 MGVp~ffrwl~~ryP~~~~~~~~~---------~-----------~~e~DnLYlDmNgIIH~c~h~~~~~~~~~~~e~e~ 60 (1140)
T 2y35_A 1 MGVPKFFRYISERYPCLSELAREH---------C-----------IPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQI 60 (1140)
T ss_dssp CCSCHHHHHHHHHSGGGEEEEETT---------T-----------SCCCSEEEEEHHHHHHHHHCC------CCCCHHHH
T ss_pred CCHHHHHHHHHHHCCCHHHHCCCC---------C-----------CCCCCEEEEECCHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 982689999998787453200004---------7-----------88677689952201113217878887777799999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999998744054306887632888414557988744434998999999999999999980765687888887877
Q 005531 79 FKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDS 158 (692)
Q Consensus 79 ~~~if~yid~lv~~vrPrklLyiAiDGVAPrAKmnQQRsRRfrsa~e~~~~~~~~~~l~~~~~~eg~~~~~~~~~~~fDs 158 (692)
|.+||+|||+||++|||||+||||||||||||||||||+||||+|++++..... ..++|+. ...+.|||
T Consensus 61 ~~~if~yid~l~~~vrPrkll~iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~~~-------~~~~g~~----~~~~~fds 129 (1140)
T 2y35_A 61 FQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAK-------AAQRGEL----REHERFDS 129 (1140)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEEECCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHC-----------CCCS
T ss_pred HHHHHHHHHHHHHEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCCC----CCCCCCCC
T ss_conf 999999999998601665048998348786257899998776531012456778-------7650776----55566774
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHH
Q ss_conf 53135518999999999999999982199986418999299999971468999999853199999998289980681389
Q 005531 159 NVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238 (692)
Q Consensus 159 N~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPGEGEhKIm~fIR~qr~~p~ydpn~~H~IyG~DADLI 238 (692)
|||||||+||.+|+.+|++||+.|+++||.|++++||+||++||||||||||+|||+||++|+||||++|||||+|||||
T Consensus 130 n~ITPGT~FM~~l~~~L~~~i~~k~~~d~~w~~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLI 209 (1140)
T 2y35_A 130 NCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALI 209 (1140)
T ss_dssp GGGSTTSHHHHHHHHHHHHHHHHHHHHCGGGSSSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHH
T ss_conf 62189808999999999999999851685646608999698989852899999999986478989997089983677399
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 97730377207995301147888753321355675200016999999999899888765667518974599999999660
Q 005531 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYEL 318 (692)
Q Consensus 239 mL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~vLREyL~~e~ 318 (692)
||||+||++||+||||++.+....+ ......+.|+++||++|||||+.||
T Consensus 210 mL~L~the~~f~ilRe~v~f~~~~~------------------------------~~~~~~~~f~~l~i~~lReyL~~ef 259 (1140)
T 2y35_A 210 ILGLCTHELHFVVLREEVKFGRNVK------------------------------RTSVEETRFFLLHLGLLREYLELEF 259 (1140)
T ss_dssp HHHHHTTCSSEEEEEESSCTTCCTT------------------------------CCCGGGCEEEEEEHHHHHHHHHHHG
T ss_pred HHHHCCCCCCEEEEECCCCCCCCCC------------------------------CCCCCCCCEEEEEEHHHHHHHHHHH
T ss_conf 9997068875899613112465445------------------------------5664446438997368999999986
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHH
Q ss_conf 89-99999873135687899876431477789999643350059999999999851149942338823269999999999
Q 005531 319 DI-PNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSV 397 (692)
Q Consensus 319 ~~-~~~~~~~d~eriIDDfVfLcfl~GNDFLPhlpsl~I~egaid~L~~~Yk~~l~~~~gYLt~~g~inl~~l~~~l~~l 397 (692)
.. ...++++|+||+||||||||||+|||||||+|+++|++|||+.|+.+|++.++.++||||++|+||+++++.||+.|
T Consensus 260 ~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~~gai~~L~~~Y~~~~~~~~gyl~~~g~in~~~l~~~l~~l 339 (1140)
T 2y35_A 260 DALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISAL 339 (1140)
T ss_dssp GGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTTTTHHHHHHHHHHHHGGGSSSCSEETTEECHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHH
T ss_conf 54126655544888777799999973876579987536577779999999999888728922479888599999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHH--HHHCCHH---H--HH-CC--CCCCCC--CCCCC-CCCHHHHHH
Q ss_conf 98699999999999999997899--------8786--4201204---4--31-18--500001--23469-953577688
Q 005531 398 AVYEDQIFQKRTRIQQAYEYNEA--------MKLN--ARRESSE---E--LL-QA--PVAVAD--TVKLG-EPGYKERYY 456 (692)
Q Consensus 398 ~~~E~~if~~r~~~~~~~~~~~~--------~~~~--~r~~~~~---~--~~-~~--~~~~~d--~v~l~-e~~~k~rYY 456 (692)
++.|.++|+++....+....+.+ .... ......+ . .+ .. ..+..| ....+ .++||++||
T Consensus 340 ~~~E~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~k~~YY 419 (1140)
T 2y35_A 340 TEVELDHFKEHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSEEDCSDENAVLLKEFQNYKRNFY 419 (1140)
T ss_dssp HHHHHHHHHHHSCC------------------------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998888888642101003312220232210367899887554203456543332266665433317999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87509999256779999999999987999855211576765555677988310001102684122248999994878551
Q 005531 457 ADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMG 536 (692)
Q Consensus 457 ~~Kf~~~~~~~~~~~~~~v~~~Y~eGL~Wvl~YYy~G~~SW~WyYPyHYAPfasDl~~l~~~~i~F~~g~Pf~P~eQLm~ 536 (692)
++||+.+.. +++++++|++|+|||||||+|||+|||||+||||||||||||||.++.+++++|++|+||+||||||+
T Consensus 420 ~~Kf~~~~~---~~~~~~~~~~YveGl~Wvl~YYy~G~~SW~WyYpyhYAP~~sDl~~~~~~~i~F~~g~Pf~PfeQLm~ 496 (1140)
T 2y35_A 420 RNKFKRDPN---DELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLA 496 (1140)
T ss_dssp HHHHCSCCC---HHHHHHHHHHHHHHHHHHHHHHHTSCSCSSCCCCCSSCCCGGGCCCCTTCCCCCCCCCCCCHHHHHHH
T ss_pred HHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 997089876---89999999999999999999745898898762677768527888742135431038999985998875
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCC
Q ss_conf 37888889850774200179999663248886211478972202112014677968999998541069999898304689
Q 005531 537 TLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVM 616 (692)
Q Consensus 537 VLP~~S~~~LP~~~~~Lm~~~~Spi~dfYP~~f~iD~nGk~~~WqgV~lLPFIDe~~Ll~a~~~~~~~Lt~eE~~RN~~g 616 (692)
||||+|+++||++|++||++|+|||+||||++|+||||||+++|||||||||||++||++|++++++.||+||++||++|
T Consensus 497 VLP~~S~~~LP~~~~~Lm~~~~Spi~dfYP~~f~iD~nGk~~~we~VvllPFIde~~Ll~a~~~~~~~Lt~eE~~RN~~g 576 (1140)
T 2y35_A 497 VLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEERERNRHG 576 (1140)
T ss_dssp HCCGGGGGGSCGGGHHHHHCTTCTTGGGSCSSCCCCCSSCCSGGGSCCCCCCCCHHHHHHTTHHHHHHSCHHHHHTTSCC
T ss_pred HCCHHHHHHCCHHHHHHHCCCCCCHHHHCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHCCCC
T ss_conf 34855443377989974249997246749433566578984767768978737889999998750056999999642568
Q ss_pred CCEEEECCCC
Q ss_conf 9589982999
Q 005531 617 LDLLYVHPQH 626 (692)
Q Consensus 617 ~~~l~~~~~~ 626 (692)
.+++|.++..
T Consensus 577 ~~~~~~~~~~ 586 (1140)
T 2y35_A 577 PMYVYKYSTV 586 (1140)
T ss_dssp CEEEEEECSS
T ss_pred CCEEEEECCC
T ss_conf 7338973665
No 4
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=1.00 E-value=1 Score=80.94 Aligned_cols=227 Identities=15% Similarity=0.226 Sum_probs=110.2
Q ss_pred EEEEECCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 07862234323321578----99999999999999999999987440-54306887632888414557988744434998
Q 005531 51 NLYLDMNGIIHPCFHPD----GKPAPTSYDDVFKSIFDYIDHIFLLV-RPRKLLYLAIDGVAPRAKMNQQRTRRFRAAKD 125 (692)
Q Consensus 51 nLYlDmNgIIH~c~h~~----~~~~p~te~e~~~~if~yid~lv~~v-rPrklLyiAiDGVAPrAKmnQQRsRRfrsa~e 125 (692)
-+-||.++.+|.+.+.- +.+........-..+..++.+++.+. .|-+ .++++||.+|..|......||-+....
T Consensus 23 ~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~-pv~VFDG~~~~~K~~~~~~R~~~r~~~ 101 (340)
T 1b43_A 23 KIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIK-PVYVFDGEPPEFKKKELEKRREAREEA 101 (340)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCE-EEEEECCSCCCCSSCSSTTCCCCTTHH
T ss_pred EEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8999809999999997454357703224698509999999999999968898-999962989412245678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 9999999999999999807656878888878--77531355189999999999999999821999864189992999999
Q 005531 126 AAEAEAEEERLRKEFEEAGKLLSAKEKPETC--DSNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPG 203 (692)
Q Consensus 126 ~~~~~~~~~~l~~~~~~eg~~~~~~~~~~~f--DsN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPG 203 (692)
.+... +.++ .|..-. ...+ .++.||| +.... ++..+.. + ++.+|. .|+
T Consensus 102 ~~~~~-------~~yk-~g~~~~----~~~~~~~~~~vt~--~~~~~----~~~lL~~-~-------gip~i~----ap~ 151 (340)
T 1b43_A 102 EEKWR-------EALE-KGEIEE----ARKYAQRATRVNE--MLIED----AKKLLEL-M-------GIPIVQ----APS 151 (340)
T ss_dssp HHHHH-------HHHH-HSCHHH----HHHHHHTSGGGTH--HHHHH----HHHHHHH-H-------TCCEEE----CSS
T ss_pred HHHHH-------HHHH-CCCHHH----HHHHHHHCCCCCH--HHHHH----HHHHHHH-C-------CCCEEE----CCH
T ss_conf 99888-------8987-589999----9999975278999--99999----9999998-4-------996897----576
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 71468999999853199999998289980681389977303772079953011478887533213556752000169999
Q 005531 204 EGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPG 283 (692)
Q Consensus 204 EGEhKIm~fIR~qr~~p~ydpn~~H~IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c~~~~~ 283 (692)
|+|.-|...-+.- ..+.|++.|+|+++++- ++ +++.. ...+ .+ +. +
T Consensus 152 EADa~iA~La~~g---------~~~~i~S~D~D~l~~g~----~~--v~~~~-~~~~---~~-------------~~-p- 197 (340)
T 1b43_A 152 EGEAQAAYMAAKG---------SVYASASQDYDSLLFGA----PR--LVRNL-TITG---KR-------------KL-P- 197 (340)
T ss_dssp CHHHHHHHHHHHT---------SSSEEECSSSHHHHTTC----SE--EEEST-TTCE---EE-------------EC-T-
T ss_pred HHHHHHHHHHHCC---------CEEEEECCCCCCCEECC----CE--EEEEE-CCCC---CC-------------CC-C-
T ss_conf 4999999999759---------87899716878445468----68--99973-2688---75-------------67-6-
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCHHH
Q ss_conf 999998998887656675189745999999996608999999873135687899876431477789-9996433500599
Q 005531 284 DNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLP-HMPTLEIREGAIN 362 (692)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~f~~l~i~vLREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLP-hlpsl~I~egaid 362 (692)
.... ...-.+.+++..-+.+.+ . ++ -+.||.+|.|+|+||+| ++|++... .|+.
T Consensus 198 --------~~~~-~v~~~~~~~~~~~v~~~~----g-------l~----~~q~id~~~L~G~Dy~p~gv~GiG~k-tA~k 252 (340)
T 1b43_A 198 --------GKNV-YVEIKPELIILEEVLKEL----K-------LT----REKLIELAILVGTDYNPGGIKGIGLK-KALE 252 (340)
T ss_dssp --------TSSC-EEEECCEEEEHHHHHHHH----T-------CC----HHHHHHHHHHHCCTTSTTCSTTCCHH-HHHH
T ss_pred --------CCCC-CCCCCEEEEEHHHHHHHH----C-------CC----HHHHHHHHHHCCCCCCCCCCCCCCHH-HHHH
T ss_conf --------5322-333450687799999880----9-------79----99999999761899888898876699-9999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 005531 363 LLMHVY 368 (692)
Q Consensus 363 ~L~~~Y 368 (692)
|+..|
T Consensus 253 -li~~~ 257 (340)
T 1b43_A 253 -IVRHS 257 (340)
T ss_dssp -HHHTC
T ss_pred -HHHHC
T ss_conf -99980
No 5
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=1.00 E-value=1 Score=72.27 Aligned_cols=199 Identities=18% Similarity=0.275 Sum_probs=103.6
Q ss_pred CEEEEECCCCCCCCCCCC----CCCC----CCCHHHHHHHHHHHHHHH-HHHCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 807862234323321578----9999----999999999999999998-7440543068876328884145579887444
Q 005531 50 DNLYLDMNGIIHPCFHPD----GKPA----PTSYDDVFKSIFDYIDHI-FLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120 (692)
Q Consensus 50 DnLYlDmNgIIH~c~h~~----~~~~----p~te~e~~~~if~yid~l-v~~vrPrklLyiAiDGVAPrAKmnQQRsRRf 120 (692)
--+-||.++.+|.+++.- +.+. -.....+ ..++..+-++ ..-++| ++++||..|..|......|+-
T Consensus 22 ~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l-~g~~~~l~~ll~~~i~P----v~vFDG~~~~~k~~~~~~yk~ 96 (326)
T 1a76_A 22 KKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAY-NGVFYKTIHLLENDITP----IWVFDGEPPKLKEKTRKVRRE 96 (326)
T ss_dssp CEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHH-HHHHHHHHHHHHTTCEE----EEEECCCSSCCCCSSCCSSCS
T ss_pred CEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCEE----EEEEECCCCCCCHHHHHHHHH
T ss_conf 9899984999999998624345663400369953799-99999999999779969----999839596321456888888
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 349---989999999999999999807656878888878--775313551899999999999999998219998641899
Q 005531 121 RAA---KDAAEAEAEEERLRKEFEEAGKLLSAKEKPETC--DSNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVI 195 (692)
Q Consensus 121 rsa---~e~~~~~~~~~~l~~~~~~eg~~~~~~~~~~~f--DsN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI 195 (692)
+.. .+...... +|.. .....| .+..||| ..+..+.+.|+. + ++.++
T Consensus 97 ~R~~~~~~l~~~~~-----------~g~~----~~a~~~~~~~~~vt~--~~~~~~~~lL~~-----~-------gi~~i 147 (326)
T 1a76_A 97 MKEKAELKMKEAIK-----------KEDF----EEAAKYAKRVSYLTP--KMVENCKYLLSL-----M-------GIPYV 147 (326)
T ss_dssp SSCSSCSCCCCCCS-----------HHHH----HTTSTTGGGGCSSCH--HHHHHHHHHHHH-----H-------TCCEE
T ss_pred HHHHHHHHHHHHHH-----------CCCH----HHHHHHHHHCCCCCH--HHHHHHHHHHHH-----C-------CCCEE
T ss_conf 77756888899997-----------6899----999999974378999--999999999998-----4-------99857
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 92999999714689999998531999999982899806813899773037720799530114788875332135567520
Q 005531 196 LSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLA 275 (692)
Q Consensus 196 ~Sds~vPGEGEhKIm~fIR~qr~~p~ydpn~~H~IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~ 275 (692)
..|||+|--|..+-+. ...++|++.|.|+++++- ++ +++.. ..
T Consensus 148 ----~apgEAD~~ia~La~~---------g~~~~I~S~D~Dll~~~~----~~--v~~~~-~~----------------- 190 (326)
T 1a76_A 148 ----EAPSEGEAQASYMAKK---------GDVWAVVSQDYDALLYGA----PR--VVRNL-TT----------------- 190 (326)
T ss_dssp ----ECSSCHHHHHHHHHHT---------TSSSEEECSSSGGGGGTC----SE--EEESS-SS-----------------
T ss_pred ----ECCCCHHHHHHHHHHC---------CCEEEEECCCCCCCEECC----CE--EEEEE-CC-----------------
T ss_conf ----8984099999999977---------997899558834102248----87--99950-37-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCC
Q ss_conf 00169999999998998887656675189745999999996608999999873135687899876431477789-99964
Q 005531 276 AECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLP-HMPTL 354 (692)
Q Consensus 276 ~~c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~vLREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLP-hlpsl 354 (692)
..+.+++++..-+.+.+ .+ + -+.|+.+|.|+|+||+| ++|++
T Consensus 191 ----------------------~~~~~~~~~~~~v~~~~----gl-------~----~~q~id~~~L~GsD~~p~GvpGi 233 (326)
T 1a76_A 191 ----------------------TKEMPELIELNEVLEDL----RI-------S----LDDLIDIAIFMGTDYNPGGVKGI 233 (326)
T ss_dssp ----------------------CSSCCEEEEHHHHHHHH----TC-------C----HHHHHHHHHHHCCTTSTTTTTTC
T ss_pred ----------------------CCCCEEEEEHHHHHHHC----CC-------C----HHHHHHHHHHCCCCCCCCCCCCC
T ss_conf ----------------------99966998889999884----99-------9----99999999974999999899985
Q ss_pred CC
Q ss_conf 33
Q 005531 355 EI 356 (692)
Q Consensus 355 ~I 356 (692)
..
T Consensus 234 G~ 235 (326)
T 1a76_A 234 GF 235 (326)
T ss_dssp CH
T ss_pred CH
T ss_conf 79
No 6
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=1.00 E-value=1 Score=68.31 Aligned_cols=217 Identities=17% Similarity=0.258 Sum_probs=104.8
Q ss_pred EEEEECCCCCCCCCCCC----CCC------CCCCHHHHHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHH--HHH
Q ss_conf 07862234323321578----999------999999999999999999874-40543068876328884145579--887
Q 005531 51 NLYLDMNGIIHPCFHPD----GKP------APTSYDDVFKSIFDYIDHIFL-LVRPRKLLYLAIDGVAPRAKMNQ--QRT 117 (692)
Q Consensus 51 nLYlDmNgIIH~c~h~~----~~~------~p~te~e~~~~if~yid~lv~-~vrPrklLyiAiDGVAPrAKmnQ--QRs 117 (692)
-+.||.++.+|.+++.- +.+ .++ . ....++..+-+|+. -++| ++++||.+|..|... +|+
T Consensus 23 ~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t--~-a~~g~~~~l~~ll~~~i~P----v~vFDg~~~~~R~~~~~~yk 95 (336)
T 1rxw_A 23 KIAVDAFNTLYQFISIIRQPDGTPLKDSQGRIT--S-HLSGILYRVSNMVEVGIRP----VFVFDGEPPEFKKAEIEERK 95 (336)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBC--H-HHHHHHHHHHHHHHHTCEE----EEEECCSCCGGGHHHHHHHH
T ss_pred EEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCC--H-HHHHHHHHHHHHHHCCCEE----EEEECCCCCCCCCCCHHHHH
T ss_conf 899986999999998625235774533689833--8-9999999999999889979----99980899754421068899
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf -444349989999999999999999807656878888878--77531355189999999999999999821999864189
Q 005531 118 -RRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETC--DSNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKV 194 (692)
Q Consensus 118 -RRfrsa~e~~~~~~~~~~l~~~~~~eg~~~~~~~~~~~f--DsN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~V 194 (692)
+|-.+...... ...+|. .....+ .++.|||. ....+.+.|+. -++.+
T Consensus 96 ~~R~~~~~~~~~-----------~~~~g~-----~~l~~~~~~~~~vt~~--~~~~~~~lL~~------------~gi~~ 145 (336)
T 1rxw_A 96 KRRAEAEEMWIA-----------ALQAGD-----KDAKKYAQAAGRVDEY--IVDSAKTLLSY------------MGIPF 145 (336)
T ss_dssp HHHHHHHHHHHH-----------HHHHTC-----TTHHHHHHHHCCCCHH--HHHHHHHHHHH------------TTCCE
T ss_pred HHHHHHHHHHHH-----------HHHHCH-----HHHHHHHHHHCCCCHH--HHHHHHHHHHH------------CCCCE
T ss_conf 998988999999-----------998163-----9999998741568888--99999999986------------79988
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99299999971468999999853199999998289980681389977303772079953011478887533213556752
Q 005531 195 ILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHL 274 (692)
Q Consensus 195 I~Sds~vPGEGEhKIm~fIR~qr~~p~ydpn~~H~IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~ 274 (692)
+ ..|||+|.-+...-+ ....++|++.|.|++.++- +++ +|.. ...+.
T Consensus 146 i----~apgeAEA~lA~la~---------~g~~~~I~S~D~Dllql~~----~~v--~~~l-~~~~~------------- 192 (336)
T 1rxw_A 146 V----DAPSEGEAQAAYMAA---------KGDVEYTGSQDYDSLLFGS----PRL--ARNL-AITGK------------- 192 (336)
T ss_dssp E----ECSSCHHHHHHHHHH---------TTSSSEEECSSSHHHHTTC----SEE--EESC-CC----------------
T ss_pred E----ECCCHHHHHHHHHHH---------CCCEEEEECCCCCCCEECC----CEE--EEEC-CCCCC-------------
T ss_conf 9----738439999999997---------6993699737977144327----768--9943-44566-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00016999999999899888765667518974599999999660899999987313568789987643147778999964
Q 005531 275 AAECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTL 354 (692)
Q Consensus 275 ~~~c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~vLREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLPhlpsl 354 (692)
++ .+. .+ .. ....+++++..-+.+.+ .+ . -+.|+.+|.|+|+|++|++|++
T Consensus 193 ---~~-~~~---~~------~~-~~~~~~~~~~~~v~~~~----gl-------~----~~q~id~~~L~GsD~ipGv~Gi 243 (336)
T 1rxw_A 193 ---RK-LPG---KN------VY-VDVKPEIIILESNLKRL----GL-------T----REQLIDIAILVGTDYNEGVKGV 243 (336)
T ss_dssp ------------------------CCCCEEEEHHHHHHHH----TC-------C----HHHHHHHHHHHCBTTBCCCTTC
T ss_pred ---CC-CCC---CC------CC-CCCCEEEEEHHHHHHHC----CC-------C----HHHHHHHHHHCCCCCCCCCCCC
T ss_conf ---66-775---33------33-44550786799999880----97-------9----9999999864189988899984
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 33500599999999
Q 005531 355 EIREGAINLLMHVY 368 (692)
Q Consensus 355 ~I~egaid~L~~~Y 368 (692)
-.+. |+ .|+..|
T Consensus 244 G~Kt-A~-kLl~~~ 255 (336)
T 1rxw_A 244 GVKK-AL-NYIKTY 255 (336)
T ss_dssp CHHH-HH-HHHHHH
T ss_pred CHHH-HH-HHHHHC
T ss_conf 8999-99-999982
No 7
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=1.00 E-value=1 Score=65.19 Aligned_cols=223 Identities=17% Similarity=0.258 Sum_probs=107.9
Q ss_pred EEEEECCCCCCCCCCCC----CCCC----CCCHHHHHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHHH-
Q ss_conf 07862234323321578----9999----99999999999999999874-40543068876328884145579887444-
Q 005531 51 NLYLDMNGIIHPCFHPD----GKPA----PTSYDDVFKSIFDYIDHIFL-LVRPRKLLYLAIDGVAPRAKMNQQRTRRF- 120 (692)
Q Consensus 51 nLYlDmNgIIH~c~h~~----~~~~----p~te~e~~~~if~yid~lv~-~vrPrklLyiAiDGVAPrAKmnQQRsRRf- 120 (692)
-+-||.++.+|.+.+.- +.+- -.....+ ..+|..+-+++. -++| .+++||.+|-.|-..-..|+-
T Consensus 37 ~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al-~gf~~r~~~ll~~~i~P----v~VFDg~~p~~K~~~~~~yK~~ 111 (363)
T 3ory_A 37 IIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHL-SGLFYRTINIVEAGIKP----VYVFDGKPPELKAREIERRKAV 111 (363)
T ss_dssp EEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHH-HHHHHHHHHHHHTTCEE----EEEECSSCGGGCHHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCC----EEEECCCCCCCHHHHHHHHHHH
T ss_conf 799950899999998631147776689999986199-99999999999769985----7997698964458889998875
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf -349989999999999999999807656878888878-775313551899999999999999998219998641899929
Q 005531 121 -RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETC-DSNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSD 198 (692)
Q Consensus 121 -rsa~e~~~~~~~~~~l~~~~~~eg~~~~~~~~~~~f-DsN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sd 198 (692)
..+.+.... . ..+|..-.. .+.+ .+..||| +.+..+.+.|+. + ++.+|.
T Consensus 112 R~~~~e~l~~---------~-~~~g~~~~a---~~~~~~~~~vt~--~~~~~i~~lL~~-----~-------GIp~i~-- 162 (363)
T 3ory_A 112 KEEAAKKYEE---------A-VQSGDLELA---RRYAMMSAKLTE--EMVRDAKSLLDA-----M-------GIPWVQ-- 162 (363)
T ss_dssp HHHHHHHHHH---------H-HHHTCHHHH---HHHTCCCCCCCH--HHHHHHHHHHHH-----H-------TCCEEE--
T ss_pred HHHCHHHHHH---------H-HHCCCHHHH---HHHHHCCCCCCH--HHHHHHHHHHHH-----C-------CCCEEE--
T ss_conf 4314387999---------9-982789999---998740256889--999999999998-----7-------998999--
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999714689999998531999999982899806813899773037720799530114788875332135567520001
Q 005531 199 ANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAEC 278 (692)
Q Consensus 199 s~vPGEGEhKIm~fIR~qr~~p~ydpn~~H~IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c 278 (692)
.|||+|--|...-+ ......|++.|.|+++++- ++ ++|.. +..+ . +
T Consensus 163 --apgEADaqiA~La~---------~g~~~~I~S~D~D~l~fg~----~~--v~~~l-~~~~---~-------------~ 208 (363)
T 3ory_A 163 --APAEGEAQAAYIVK---------KGDAYASASQDYDSLLFGS----PK--LVRNL-TISG---R-------------R 208 (363)
T ss_dssp --CSSCHHHHHHHHHH---------TTSCSEEECSSSHHHHTTC----SE--EEEST-TTCE---E-------------E
T ss_pred --ECCCHHHHHHHHHH---------CCCEEEEECCCCCCCCCCC----CE--EEEEE-ECCC---C-------------C
T ss_conf --68608999999997---------7996899889958332478----84--89986-6256---6-------------4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCCCCC
Q ss_conf 69999999998998887656675189745999999996608999999873135687899876431477789-99964335
Q 005531 279 HGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLP-HMPTLEIR 357 (692)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~vLREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLP-hlpsl~I~ 357 (692)
. .+. ........+.+++..-+.+.+ . ++. +.|+-+|.|+|+||+| ++|++-..
T Consensus 209 ~-~p~----------~~~~v~~~~~~~~~~~v~~~~----g-------l~~----~q~id~~~L~GsDy~p~GVpGIG~K 262 (363)
T 3ory_A 209 K-LPR----------KNEYVEVKPELIELDKLLVQL----G-------ITL----ENLIDIGILLGTDYNPDGFEGIGPK 262 (363)
T ss_dssp E-CSS----------TTCEEEECCEEEEHHHHHHHH----T-------CCH----HHHHHHHHHHCBTTBTTCSTTCCHH
T ss_pred C-CCC----------CCCCCCCCEEEECHHHHHHHH----C-------CCH----HHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 5-776----------555454551897299999985----9-------699----9999999980898888899983799
Q ss_pred CCHHHHHHHHHH
Q ss_conf 005999999999
Q 005531 358 EGAINLLMHVYR 369 (692)
Q Consensus 358 egaid~L~~~Yk 369 (692)
.|+ .|+.-|.
T Consensus 263 -tA~-kLl~~~g 272 (363)
T 3ory_A 263 -KAL-QLVKAYG 272 (363)
T ss_dssp -HHH-HHHHHHT
T ss_pred -HHH-HHHHHCC
T ss_conf -999-9999819
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=1.00 E-value=1 Score=62.76 Aligned_cols=172 Identities=17% Similarity=0.249 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC----CCCCCCCHH
Q ss_conf 9611488999953898621244579855899964477888999998656807862234323321578----999999999
Q 005531 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPD----GKPAPTSYD 76 (692)
Q Consensus 1 MGVP~ffrWL~~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpn~~e~DnLYlDmNgIIH~c~h~~----~~~~p~te~ 76 (692)
|||.+|..||...-+.+ ++ ++ . .| --+=||..+.+|...... ....+++
T Consensus 1 MGI~GL~~~L~~~~~~~--~l-~~----l-~G-----------------k~vaIDas~wL~~~~~~~~~~l~~G~~t~-- 53 (352)
T 3qe9_Y 1 MGIQGLLQFIKEASEPI--HV-RK----Y-KG-----------------QVVAVDTYCWLHKGAIACAEKLAKGEPTD-- 53 (352)
T ss_dssp -CCTTHHHHTTTSEEEE--EG-GG----G-TT-----------------SEEEEETHHHHHHHHHHTHHHHHTTCCCC--
T ss_pred CCCCHHHHHHHHHCCCC--CH-HH----H-CC-----------------CEEEEECHHHHHHHHHCCCHHHCCCCCCH--
T ss_conf 98211799998618867--78-99----4-89-----------------67999328999876650204650997808--
Q ss_pred HHHHHHHHHHHHH-HHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999999999998-744054306887632888414557988744434998999999999999999980765687888887
Q 005531 77 DVFKSIFDYIDHI-FLLVRPRKLLYLAIDGVAPRAKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPET 155 (692)
Q Consensus 77 e~~~~if~yid~l-v~~vrPrklLyiAiDGVAPrAKmnQQRsRRfrsa~e~~~~~~~~~~l~~~~~~eg~~~~~~~~~~~ 155 (692)
.+..-+...+..| -.-|+| ++.+||.+|-.|-....+||-+.......... ...+|... ...+.
T Consensus 54 ~l~~~~~r~l~~L~~~gI~P----vfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~--------~~~~g~~~---~a~~~ 118 (352)
T 3qe9_Y 54 RYVGFCMKFVNMLLSHGIKP----ILVFDGCTLPSKKEVERSRRERRQANLLKGKQ--------LLREGKVS---EAREC 118 (352)
T ss_dssp HHHHHHHHHHHHHHHTTCEE----EEEECCSCCTTTHHHHHHHHHHHHHHHHHHHH--------HTTSSCCH---HHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEE----EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH--------HHHHCCHH---HHHHH
T ss_conf 99999999999999869879----99977998378888999987777877899999--------99817989---99999
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 87-75313551899999999999999998219998641899929999997146899999985319999999828998068
Q 005531 156 CD-SNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLD 234 (692)
Q Consensus 156 fD-sN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPGEGEhKIm~fIR~qr~~p~ydpn~~H~IyG~D 234 (692)
|- +..||| +. ...++..+.. -++.++.+ |+|+|--|...-+. .....|++.|
T Consensus 119 f~~~~~vt~--~~----~~~i~~~L~~--------~gIp~i~a----p~EADaqiA~La~~---------g~~~~I~S~D 171 (352)
T 3qe9_Y 119 FTRSINITH--AM----AHKVIKAARS--------QGVDCLVA----PYEADAQLAYLNKA---------GIVQAIITED 171 (352)
T ss_dssp HGGGCCCCH--HH----HHHHHHHHHH--------TTCEEEEC----SSCHHHHHHHHHHT---------TSCSEEECSC
T ss_pred HHHCCCCCH--HH----HHHHHHHHHH--------CCCCEEEC----CCCHHHHHHHHHHC---------CCEEEEEECC
T ss_conf 862178999--99----9999999998--------09938977----82369999999987---------9968999178
Q ss_pred HHHHHHH
Q ss_conf 1389977
Q 005531 235 ADLIMLS 241 (692)
Q Consensus 235 ADLImL~ 241 (692)
.|+++++
T Consensus 172 ~Dll~~~ 178 (352)
T 3qe9_Y 172 SALLAFG 178 (352)
T ss_dssp GGGGGGT
T ss_pred CCCCCCC
T ss_conf 5821206
No 9
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=1.00 E-value=1 Score=59.45 Aligned_cols=230 Identities=19% Similarity=0.252 Sum_probs=118.7
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCC-CHH---
Q ss_conf 611488999953898621244579855899964477888999998656807862234323321578999-999-999---
Q 005531 2 GVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKP-APT-SYD--- 76 (692)
Q Consensus 2 GVP~ffrWL~~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpn~~e~DnLYlDmNgIIH~c~h~~~~~-~p~-te~--- 76 (692)
||++|...|...-|.++..+. +.. -.| --+-||.++++|.++|.-... .+. +.+
T Consensus 1 GI~GL~~~L~~~~~~~~~~~~--------------l~~----l~g---~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~ 59 (379)
T 1ul1_X 1 GIQGLAKLIADVAPSAIREND--------------IKS----YFG---RKVAIDASMSIYQFLIAVRQGGDVLQNEEGET 59 (379)
T ss_dssp CCTTHHHHHHTTCTTSCCEEC--------------GGG----GTT---CCEEEEHHHHHHHHHSCC-------------C
T ss_pred CCCHHHHHHHHHCCCCCEEEC--------------HHH----CCC---CEEEEECHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 947169999875534553427--------------899----099---98999714999999983787653568689988
Q ss_pred -HHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -9999999999998744-054306887632888414557--988-74443499899999999999999998076568788
Q 005531 77 -DVFKSIFDYIDHIFLL-VRPRKLLYLAIDGVAPRAKMN--QQR-TRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKE 151 (692)
Q Consensus 77 -e~~~~if~yid~lv~~-vrPrklLyiAiDGVAPrAKmn--QQR-sRRfrsa~e~~~~~~~~~~l~~~~~~eg~~~~~~~ 151 (692)
.-...+|..+-+++.. ++| +| ++||..|..|-. .+| .+|-.+..+... ...+|.. .
T Consensus 60 t~~l~g~~~~~~~ll~~~i~P---~~-VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~-----------~~~~g~~----~ 120 (379)
T 1ul1_X 60 TSHLMGMFYRTIRMMENGIKP---VY-VFDGKPPQLKSGELAKRSERRAEAEKQLQQ-----------AQAAGAE----Q 120 (379)
T ss_dssp CHHHHHHHHHHHHHHHTTCCE---EE-EECCSCCSCCCCCCCCC------------------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCCE---EE-EEECCCCCCCCCHHHHHHHHHHHHHHHHHH-----------HHHCCCH----H
T ss_conf 259999999999999779986---99-983978322422177777656677777788-----------8871797----8
Q ss_pred CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 888787--753135518999999999999999982199986418999299999971468999999853199999998289
Q 005531 152 KPETCD--SNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHC 229 (692)
Q Consensus 152 ~~~~fD--sN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPGEGEhKIm~fIR~qr~~p~ydpn~~H~ 229 (692)
....|. +..||+ +-+..+.+.|+. + ++.+| ..|||+|--|...-+.- ...+
T Consensus 121 ~~~~~~~~~~~vt~--~~~~~~~~lL~~-----~-------Gi~~i----~apgEADd~iA~La~~g---------~~~~ 173 (379)
T 1ul1_X 121 EVEKFTKRLVKVTK--QHNDECKHLLSL-----M-------GIPYL----DAPSEAEASCAALVKAG---------KVYA 173 (379)
T ss_dssp --------CCCCCC--SCHHHHHHHHHH-----H-------TCCEE----ECSSCHHHHHHHHHHHT---------SSSE
T ss_pred HHHHHHHHCCCCCH--HHHHHHHHHHHH-----C-------CCCEE----CCCCCHHHHHHHHHHCC---------CEEE
T ss_conf 89999863247999--999999999998-----5-------99820----48873999999999659---------8679
Q ss_pred EEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH
Q ss_conf 98068138997730377207995301147888753321355675200016999999999899888765667518974599
Q 005531 230 LYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWV 309 (692)
Q Consensus 230 IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~v 309 (692)
|.+.|.|+++++- ++ +++.. .+.+ ..+.++..++..-
T Consensus 174 iiS~D~Dll~~g~----~~--v~~~~-~~~~------------------------------------~~k~~~~~~~~~~ 210 (379)
T 1ul1_X 174 AATEDMDCLTFGS----PV--LMRHL-TASE------------------------------------AKKLPIQEFHLSR 210 (379)
T ss_dssp EECSCTHHHHTTC----SE--EEECS-SCCC-------------------------------------CCCCEEEEEHHH
T ss_pred EEECCCCCCCCCC----CE--EEEEE-CCCC------------------------------------CCCCCEEEEEHHH
T ss_conf 9826857010156----64--99970-5565------------------------------------6767719980999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999966089999998731356878998764314777899996433
Q 005531 310 LREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356 (692)
Q Consensus 310 LREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLPhlpsl~I 356 (692)
+.+.+ . ++ -+.|+.+|.|+|+||.+++|++..
T Consensus 211 v~~~~----g-------l~----~~q~id~~~L~G~D~~d~IpGIG~ 242 (379)
T 1ul1_X 211 ILQEL----G-------LN----QEQFVDLCILLGSDYCESIRGIGP 242 (379)
T ss_dssp HHHHH----T-------CC----HHHHHHHHHHHHCSSSCCCTTCCH
T ss_pred HHHHH----C-------CC----HHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 99881----9-------99----999999999809976789998579
No 10
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=54.91 Aligned_cols=222 Identities=18% Similarity=0.287 Sum_probs=108.7
Q ss_pred EEEEECCCCCCCCCCCCCC----CCCC---CHHHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHH--HHHHHH
Q ss_conf 0786223432332157899----9999---9999999999999998744-0543068876328884145579--887444
Q 005531 51 NLYLDMNGIIHPCFHPDGK----PAPT---SYDDVFKSIFDYIDHIFLL-VRPRKLLYLAIDGVAPRAKMNQ--QRTRRF 120 (692)
Q Consensus 51 nLYlDmNgIIH~c~h~~~~----~~p~---te~e~~~~if~yid~lv~~-vrPrklLyiAiDGVAPrAKmnQ--QRsRRf 120 (692)
-+-||.++.+|.+++.-.. +... ........++..+-+++.. ++| ++++||..|-.|-.. +|..+-
T Consensus 20 ~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~P----v~vFDG~~~~~r~~~~~~yk~~R 95 (346)
T 2izo_A 20 RVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIP----IYVFDGKPPEQKSEELERRRKAK 95 (346)
T ss_dssp EEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEEE----EEEECC-----------------
T ss_pred EEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE----EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89998299999999851533566354468983379999999999999779918----99977999410124778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 3499899999999999999998076568788888787--75313551899999999999999998219998641899929
Q 005531 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCD--SNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSD 198 (692)
Q Consensus 121 rsa~e~~~~~~~~~~l~~~~~~eg~~~~~~~~~~~fD--sN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sd 198 (692)
..+.+ .+.+ ....|.. .....+. +..||| +.+..+.+.|+. + ++.+|.
T Consensus 96 ~~~~~---------~l~~-~~~~g~~----~~a~~~~~~~~~vt~--~~~~~~~~lL~~-----~-------gi~~i~-- 145 (346)
T 2izo_A 96 EEAER---------KLER-AKSEGKI----EELRKYSQAILRLSN--IMVEESKKLLRA-----M-------GIPIVQ-- 145 (346)
T ss_dssp -------------------------------------------CH--HHHHHHHHHHHH-----H-------TCCEEE--
T ss_pred HHHHH---------HHHH-HHHCCCH----HHHHHHHHHCCCCCH--HHHHHHHHHHHH-----C-------CCCEEE--
T ss_conf 87689---------9999-9865899----999999863167999--999999999998-----7-------998897--
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999714689999998531999999982899806813899773037720799530114788875332135567520001
Q 005531 199 ANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAEC 278 (692)
Q Consensus 199 s~vPGEGEhKIm~fIR~qr~~p~ydpn~~H~IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c 278 (692)
.|||+|--|-..-+. .....|++.|.|+++++- ++ +++.. ...+. +
T Consensus 146 --ap~EADa~ia~La~~---------g~~~~I~S~D~D~l~~~~----~~--v~~~~-~~~~~---~------------- 191 (346)
T 2izo_A 146 --APSEGEAEAAYLNKL---------GLSWAAASQDYDAILFGA----KR--LVRNL-TITGK---R------------- 191 (346)
T ss_dssp --CSSCHHHHHHHHHHT---------TSSSEEECSSSHHHHTTC----SE--EEESS-CC--------------------
T ss_pred --CCCCHHHHHHHHHHC---------CCEEEEECCCCCCCEECC----CE--EEEEE-CCCCC---C-------------
T ss_conf --487599999999967---------985899778877063257----75--99972-45556---5-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCCCCC
Q ss_conf 69999999998998887656675189745999999996608999999873135687899876431477789-99964335
Q 005531 279 HGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLP-HMPTLEIR 357 (692)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~vLREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLP-hlpsl~I~ 357 (692)
+ .+. .+ . .....+.+++..-+.+.+ .+ . -+.|+.+|.|+|+|++| .+|++-..
T Consensus 192 ~-~p~---~~------~-~~~~~~~~~~~~~v~~~~----gl-------~----~~q~id~~~L~G~D~~p~Gv~GIG~K 245 (346)
T 2izo_A 192 K-LPN---KD------V-YVEIKPELIETEILLKKL----GI-------T----REQLIDIGILIGTDYNPDGIRGIGPE 245 (346)
T ss_dssp ------------------CCCCCCEEEEHHHHHHHH----TC-------C----HHHHHHHHHHHCCSSSTTCSTTCCHH
T ss_pred C-CCC---CC------C-CCCCCEEEEEHHHHHHHC----CC-------C----HHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 6-765---33------3-455551887799989872----99-------8----99999999972898898899983799
Q ss_pred CCHHHHHHHHH
Q ss_conf 00599999999
Q 005531 358 EGAINLLMHVY 368 (692)
Q Consensus 358 egaid~L~~~Y 368 (692)
. |+. |+..|
T Consensus 246 t-A~k-Li~~~ 254 (346)
T 2izo_A 246 R-ALK-IIKKY 254 (346)
T ss_dssp H-HHH-HHHHS
T ss_pred H-HHH-HHHHC
T ss_conf 9-999-99986
Done!