BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005532
(692 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 18/210 (8%)
Query: 429 NLEF--GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-----GLEKPRGGEV 481
N EF Y ++L N+ L ++R + I GPNGCGKSTL++ I G
Sbjct: 438 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT 497
Query: 482 LLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541
+ EH++ + D +VL+ V E+ + + IK L F +M+ +
Sbjct: 498 VYVEHDI----------DGTHSDTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEMIAMPI 546
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRY 601
S LSGG K +LA + +++ + +L+LDEPTNHLD + L ++ T IT+SHD
Sbjct: 547 SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV 606
Query: 602 FVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
F+ + ++ +G L+ Y G++ +++K
Sbjct: 607 FLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 116/285 (40%), Gaps = 64/285 (22%)
Query: 245 ELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGK 304
E GFT + +++ S GW+M+++L + EPTNHLD + WL YL
Sbjct: 534 EFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
Query: 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364
+ + ISHD FLD +C I+ E R Y+GN++++V + A K
Sbjct: 594 CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPA---------AKAYE 644
Query: 365 EIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERG------ 418
E+ T ++ +FPE G
Sbjct: 645 ELSNT---------------------------------------DLEFKFPEPGYLEGVK 665
Query: 419 RSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
+++V + N+EF Y + N + A+IGPNG GKSTL+ ++ G P
Sbjct: 666 TKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 477 RGGEVLLGEHNVLPNYFEQNQAEALD--LDKTVLETVAEAAEDWR 519
GEV E N Y +Q+ ++ LDKT E + WR
Sbjct: 726 TSGEVYTHE-NCRIAYIKQHAFAHIESHLDKTPSEYI-----QWR 764
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%)
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFV 603
LSGG+K +L + L+VLDEPTN+LD S L +A+ E++G VI ++H F
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFT 961
Query: 604 KQIVNRVVEVK 614
K + V VK
Sbjct: 962 KNLTEEVWAVK 972
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 18/210 (8%)
Query: 429 NLEF--GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-----GLEKPRGGEV 481
N EF Y ++L N+ L ++R + I GPNGCGKSTL + I G
Sbjct: 438 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRT 497
Query: 482 LLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541
+ EH++ + D +VL+ V E+ + + IK L F + + +
Sbjct: 498 VYVEHDI----------DGTHSDTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEXIAXPI 546
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRY 601
S LSGG K +LA + +++ + +L+LDEPTNHLD + L ++ T IT+SHD
Sbjct: 547 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV 606
Query: 602 FVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
F+ + ++ +G L+ Y G++ +++K
Sbjct: 607 FLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 114/285 (40%), Gaps = 64/285 (22%)
Query: 245 ELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGK 304
E GFT + +++ S GW+ +++L + EPTNHLD + WL YL
Sbjct: 534 EFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
Query: 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364
+ + ISHD FLD +C I+ E R Y+GN++++V + A K
Sbjct: 594 CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPA---------AKAYE 644
Query: 365 EIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERG------ 418
E+ T ++ +FPE G
Sbjct: 645 ELSNT---------------------------------------DLEFKFPEPGYLEGVK 665
Query: 419 RSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
+++V + N EF Y + N + A+IGPNG GKSTL+ ++ G P
Sbjct: 666 TKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 477 RGGEVLLGEHNVLPNYFEQNQAEALD--LDKTVLETVAEAAEDWR 519
GEV E N Y +Q+ ++ LDKT E + WR
Sbjct: 726 TSGEVYTHE-NCRIAYIKQHAFAHIESHLDKTPSEYI-----QWR 764
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD 599
++ LSGG+K +L + L+VLDEPTN+LD S L +A+ E++G VI ++H
Sbjct: 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS 957
Query: 600 RYFVKQIVNRVVEVK 614
F K + V VK
Sbjct: 958 AEFTKNLTEEVWAVK 972
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 257 VASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316
+ S G ++++ L EPTN+LD D++ L L + + ++II+H
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 317 AFLDQLCTKI 326
F L ++
Sbjct: 959 EFTKNLTEEV 968
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 18/210 (8%)
Query: 429 NLEF--GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-----GLEKPRGGEV 481
N EF Y ++L N+ L ++R + I GPNGCGKSTL + I G
Sbjct: 432 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRT 491
Query: 482 LLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541
+ EH++ + D +VL+ V E+ + + IK L F + + +
Sbjct: 492 VYVEHDI----------DGTHSDTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEXIAXPI 540
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRY 601
S LSGG K +LA + +++ + +L+LDEPTNHLD + L ++ T IT+SHD
Sbjct: 541 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV 600
Query: 602 FVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
F+ + ++ +G L+ Y G++ +++K
Sbjct: 601 FLDNVCEYIINYEGLKLRKYKGNFTEFVKK 630
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 114/285 (40%), Gaps = 64/285 (22%)
Query: 245 ELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGK 304
E GFT + +++ S GW+ +++L + EPTNHLD + WL YL
Sbjct: 528 EFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 587
Query: 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364
+ + ISHD FLD +C I+ E R Y+GN++++V + A K
Sbjct: 588 CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPA---------AKAYE 638
Query: 365 EIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERG------ 418
E+ T ++ +FPE G
Sbjct: 639 ELSNT---------------------------------------DLEFKFPEPGYLEGVK 659
Query: 419 RSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
+++V + N EF Y + N + A+IGPNG GKSTL+ ++ G P
Sbjct: 660 TKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 719
Query: 477 RGGEVLLGEHNVLPNYFEQNQAEALD--LDKTVLETVAEAAEDWR 519
GEV E N Y +Q+ ++ LDKT E + WR
Sbjct: 720 TSGEVYTHE-NCRIAYIKQHAFAHIESHLDKTPSEYI-----QWR 758
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%)
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFV 603
LSGG+K +L + L+VLDEPTN+LD S L +A+ E++G VI ++H F
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFT 955
Query: 604 KQIVNRVVEVK 614
K + V VK
Sbjct: 956 KNLTEEVWAVK 966
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 257 VASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316
+ S G ++++ L EPTN+LD D++ L L + + ++II+H
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 952
Query: 317 AFLDQLCTKI 326
F L ++
Sbjct: 953 EFTKNLTEEV 962
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G + G
Sbjct: 13 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 72
Query: 485 EHNV--LP----NYFEQNQAEALDLDKTVLETVAEA--AEDWRIDDIKGLLGRCNFKA-- 534
+ +V LP N Q+ A+ TV E +A + + D+I R + A
Sbjct: 73 DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID---KRVRWAAEL 129
Query: 535 ----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---- 586
++L+R + LSGG++ R+A + +V +L++DEP ++LD + + I
Sbjct: 130 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 189
Query: 587 SEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632
+ K T I V+HD+ + +R+ + L YL N
Sbjct: 190 QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 235
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
VKLEN++K + T + + GKTT LR+IAG EEP G +
Sbjct: 13 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 69
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G + G
Sbjct: 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71
Query: 485 EHNV--LP----NYFEQNQAEALDLDKTVLETVAEA--AEDWRIDDIKGLLGRCNFKA-- 534
+ +V LP N Q+ A+ TV E +A + + D+I R + A
Sbjct: 72 DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID---KRVRWAAEL 128
Query: 535 ----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---- 586
++L+R + LSGG++ R+A + +V +L++DEP ++LD + + I
Sbjct: 129 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 188
Query: 587 SEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632
+ K T I V+HD+ + +R+ + L YL N
Sbjct: 189 QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
VKLEN++K + T + + GKTT LR+IAG EEP G +
Sbjct: 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE---HNVLPNYFEQN---QAEA 500
++ GE A++GP+GCGK+T L ++ G+ KP GE+ + +++ P Y E Q A
Sbjct: 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYA 85
Query: 501 LDLDKTVLETVAEAAEDWRI--DDIKGL---LGRCNFKADMLDRKVSLLSGGEKARLAFC 555
L TV E +A RI D+++ + R ++LDRK + LSGG++ R+A
Sbjct: 86 LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALA 145
Query: 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVV 611
+ +VK +L+ DEP ++LD + ++ I E T + V+HD+ + +R+
Sbjct: 146 RALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIA 205
Query: 612 EVKGSNLQDYA 622
L Y
Sbjct: 206 VFNQGKLVQYG 216
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 115/237 (48%), Gaps = 33/237 (13%)
Query: 423 SVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+V +++ F Y +R L+ T+ GE TA++GPNG GKST+ L+ L +P GG
Sbjct: 13 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG 72
Query: 480 EVLLG-------EHNVL----------PNYF----EQNQAEALDLDKTVLETVAEAAEDW 518
++LL EH L P F ++N A L T+ E A A +
Sbjct: 73 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSG 132
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
I GL + + +D S LSGG++ +A + +++ +L+LD+ T+ LD S
Sbjct: 133 AHSFISGLPQGYDTE---VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
Query: 579 K----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
+ ++L E+ Y +V+ ++ V+Q + ++ ++G +++ G + +EK
Sbjct: 190 QLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAIRE-GGTHQQLMEK 244
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 28/200 (14%)
Query: 425 VTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V KN+ F Y +R + + ++E G+ A++GP+GCGKST++ L+ GGE+
Sbjct: 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136
Query: 482 LLG---------EHNVL--------PNYFEQNQAEAL--DLDKTVLETVAEAAEDWRIDD 522
+ EH P F+ + AE + LD + + T+A+ E R+ +
Sbjct: 1137 FIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSV-TMAQVEEAARLAN 1195
Query: 523 IKGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
I + F+ + DR L SGG+K R+A + +V+ +L+LDE T+ LD S++
Sbjct: 1196 IHNFIAELPEGFETRVGDRGTQL-SGGQKQRIAIARALVRNPKILLLDEATSALDTESEK 1254
Query: 581 MLEEAISEYK--GTVITVSH 598
+++EA+ + T I ++H
Sbjct: 1255 VVQEALDRAREGRTCIVIAH 1274
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 37/217 (17%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGK 463
RK MKI+ +T++N+ F Y R + NL + G+ A++G +GCGK
Sbjct: 407 RKDMKIK---------GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGK 457
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVL-----------------PNYFEQNQAEALDLDK- 505
ST++ L++ G++ + +V P F E + L K
Sbjct: 458 STIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE 517
Query: 506 --TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563
T E VA IK L N ++ + + LSGG+K R+A + +V+
Sbjct: 518 GITREEMVAACKMANAEKFIKTLPNGYN---TLVGDRGTQLSGGQKQRIAIARALVRNPK 574
Query: 564 LLVLDEPTNHLDIPSKEMLEEAISE-YKG-TVITVSH 598
+L+LDE T+ LD S+ ++++A+ + KG T I ++H
Sbjct: 575 ILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 110/212 (51%), Gaps = 21/212 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEAAEDWRIDDI---KGLLGRCNF 532
+ H++ PN+ + L L++++++ ++ A ++ + L G +F
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 533 KADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+++ + + + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 586 ISEY-KG-TVITVSHDRYFVKQIVNRVVEVKG 615
+ + KG TVI ++H VK +V KG
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKG 213
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 110/212 (51%), Gaps = 21/212 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEAAEDWRIDDI---KGLLGRCNF 532
+ H++ PN+ + L L++++++ ++ A ++ + L G +F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 533 KADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+++ + + + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 586 ISEY-KG-TVITVSHDRYFVKQIVNRVVEVKG 615
+ + KG TVI ++H VK +V KG
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKG 219
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 110/212 (51%), Gaps = 21/212 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEAAEDWRIDDI---KGLLGRCNF 532
+ H++ PN+ + L L++++++ ++ A ++ + L G +F
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 533 KADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+++ + + + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 586 ISEY-KG-TVITVSHDRYFVKQIVNRVVEVKG 615
+ + KG TVI ++H VK +V KG
Sbjct: 184 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKG 215
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 26/229 (11%)
Query: 419 RSGRSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
+S + + KN+ F Y R +F +L+I G TA++GP+G GKST+L L++ L
Sbjct: 367 KSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 426
Query: 476 PRGGEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAED---------WR 519
P G + L H++ L + E + ++ E +A A+D R
Sbjct: 427 PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQR 486
Query: 520 IDDIKGLLGRC-NFKAD---MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
+ ++ + NF ++ K LLSGG+K R+A + ++K +L+LDE T+ LD
Sbjct: 487 VAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 546
Query: 576 IPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDYA 622
++ +++EA+ TV+ ++H +K N V + + +Y
Sbjct: 547 AENEYLVQEALDRLMDGRTVLVIAHHLSTIKN-ANMVAVLDQGKITEYG 594
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 109/212 (51%), Gaps = 21/212 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G G GKSTL KLI P G+VL
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEAAEDWRIDDI---KGLLGRCNF 532
+ H++ PN+ + L L++++++ ++ A ++ + L G +F
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 533 KADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+++ + + + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 586 ISEY-KG-TVITVSHDRYFVKQIVNRVVEVKG 615
+ + KG TVI ++H VK +V KG
Sbjct: 184 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKG 215
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 25/205 (12%)
Query: 419 RSGRSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
+S + + KN+ F Y R +F +L+I G TA++GP+G GKST+L L++ L
Sbjct: 336 KSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395
Query: 476 PRGGEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAED---------WR 519
P G + L H++ L + E + ++ E +A A+D R
Sbjct: 396 PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQR 455
Query: 520 IDDIKGLLGRC-NFKAD---MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
+ ++ + NF ++ K LLSGG+K R+A + ++K +L+LDE T+ LD
Sbjct: 456 VAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 515
Query: 576 IPSKEMLEEAISEYKG--TVITVSH 598
++ +++EA+ TV+ ++H
Sbjct: 516 AENEYLVQEALDRLMDGRTVLVIAH 540
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 33/211 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 485 E-------------------HNVLPNY-FEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
E + + P+ +N + L L E + + R++ +
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI-----NQRVNQVA 118
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+L A +LDRK LSGG++ R+A + +V ++ +LDEP ++LD + +
Sbjct: 119 EVLQL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174
Query: 585 AISEYKG----TVITVSHDRYFVKQIVNRVV 611
IS T+I V+HD+ + +++V
Sbjct: 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIV 205
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 93/252 (36%), Gaps = 58/252 (23%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
+ V+L+N++K++ V V KD+ + GK+T LR+IAG E SG++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 156 KAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ M + + Q + + +V E K +AG + V + V
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK----LAGAKKEVINQRVNQV 117
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
++ + LLD RK +A S G + R
Sbjct: 118 AEVLQLAHLLD------RKPKA------------------------------LSGGQRQR 141
Query: 268 MSLGKIXXXXXXXXXXXEPTNHLDLDT-------IEWLEGYLGKQDVPMVIISHDRAFLD 320
+++G+ EP ++LD I L LG+ M+ ++HD+
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT---MIYVTHDQVEAM 198
Query: 321 QLCTKIVETEMG 332
L KIV + G
Sbjct: 199 TLADKIVVLDAG 210
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 110/212 (51%), Gaps = 21/212 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEAAEDWRIDDI---KGLLGRCNF 532
+ H++ PN+ + L L++++++ ++ A ++ + L G +F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 533 KADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+++ + + + LSGG++ R+A + +V +L+ D+ T+ LD S+ ++
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN 187
Query: 586 ISEY-KG-TVITVSHDRYFVKQIVNRVVEVKG 615
+ + KG TVI ++H VK +V KG
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKG 219
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 33/211 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 485 E-------------------HNVLPNY-FEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
E + + P+ +N + L L E + + R++ +
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI-----NQRVNQVA 118
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+L A +LDRK LSGG++ R+A + +V ++ +LDEP ++LD + +
Sbjct: 119 EVLQL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174
Query: 585 AISEYKG----TVITVSHDRYFVKQIVNRVV 611
IS T+I V+HD+ + +++V
Sbjct: 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIV 205
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 93/252 (36%), Gaps = 58/252 (23%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
+ V+L+N++K++ V V KD+ + GK+T LR+IAG E SG++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 156 KAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ M + + Q + + +V E K +AG + V + V
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK----LAGAKKEVINQRVNQV 117
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
++ + LLD RK +A S G + R
Sbjct: 118 AEVLQLAHLLD------RKPKA------------------------------LSGGQRQR 141
Query: 268 MSLGKIXXXXXXXXXXXEPTNHLDLDT-------IEWLEGYLGKQDVPMVIISHDRAFLD 320
+++G+ EP ++LD I L LG+ M+ ++HD+
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT---MIYVTHDQVEAM 198
Query: 321 QLCTKIVETEMG 332
L KIV + G
Sbjct: 199 TLADKIVVLDAG 210
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 29/205 (14%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-------- 491
+ N+ IE GE+ I+GP+G GK+T +++I GL+ P GE+ + V N
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 492 ------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-- 543
F Q AL + T E +A + ++ + + R A +LD L
Sbjct: 81 DRKIGMVF---QTWALYPNLTAFENIAFPLTNMKMSK-EEIRKRVEEVAKILDIHHVLNH 136
Query: 544 ----LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI----PSKEMLEEAISEYKGTVIT 595
LSGG++ R+A + +VK +LL+LDEP ++LD ++ +++E S T++
Sbjct: 137 FPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 596 VSHDRYFVKQIVNRV-VEVKGSNLQ 619
VSHD + I +RV V VKG +Q
Sbjct: 197 VSHDPADIFAIADRVGVLVKGKLVQ 221
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSG 152
+ ++N+SK +K V L +V AGKTT +RIIAG + P +G
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 15/207 (7%)
Query: 425 VTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++++NL F Y+ + LF + N + +G+ A++G NGCGKSTLL L++G+ +P G++ +
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 484 GEH-NVLPNYFEQNQA-EALDL----DKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADM 536
+ +P +F A LD+ T + T A+ + D+++ L N +
Sbjct: 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA--MQALDYLNL-THL 121
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGT 592
R+ + LSGG++ + + + L++LDEPT+ LD+ +++ +L + T
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 593 VITVSHDRYFVKQIVNRVVEVKGSNLQ 619
V+ +H V I N+ + + N +
Sbjct: 182 VVFTTHQPNQVVAIANKTLLLNKQNFK 208
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 33/211 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 485 E-------------------HNVLPNY-FEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
E + + P+ +N + L L E + + R++ +
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI-----NQRVNQVA 118
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+L A +LDRK LSGG++ R+A + +V ++ +LD+P ++LD + +
Sbjct: 119 EVLQL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRI 174
Query: 585 AISEYKG----TVITVSHDRYFVKQIVNRVV 611
IS T+I V+HD+ + +++V
Sbjct: 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIV 205
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 93/252 (36%), Gaps = 58/252 (23%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
+ V+L+N++K++ V V KD+ + GK+T LR+IAG E SG++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 156 KAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ M + + Q + + +V E K +AG + V + V
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK----LAGAKKEVINQRVNQV 117
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
++ + LLD RK +A S G + R
Sbjct: 118 AEVLQLAHLLD------RKPKA------------------------------LSGGQRQR 141
Query: 268 MSLGKIXXXXXXXXXXXEPTNHLDLDT-------IEWLEGYLGKQDVPMVIISHDRAFLD 320
+++G+ +P ++LD I L LG+ M+ ++HD+
Sbjct: 142 VAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT---MIYVTHDQVEAM 198
Query: 321 QLCTKIVETEMG 332
L KIV + G
Sbjct: 199 TLADKIVVLDAG 210
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 29/205 (14%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-------- 491
+ N+ IE GE+ I+GP+G GK+T +++I GL+ P GE+ + V N
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 492 ------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-- 543
F Q AL + T E +A + ++ + + R A +LD L
Sbjct: 81 DRKIGMVF---QTWALYPNLTAFENIAFPLTNMKMSK-EEIRKRVEEVAKILDIHHVLNH 136
Query: 544 ----LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI----PSKEMLEEAISEYKGTVIT 595
LSG ++ R+A + +VK +LL+LDEP ++LD ++ +++E S T++
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 596 VSHDRYFVKQIVNRV-VEVKGSNLQ 619
VSHD + I +RV V VKG +Q
Sbjct: 197 VSHDPADIFAIADRVGVLVKGKLVQ 221
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSG 152
+ ++N+SK +K V L +V AGKTT +RIIAG + P +G
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 103/194 (53%), Gaps = 21/194 (10%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEAAEDWRIDDI---KGLLGRCNF 532
+ H++ PN+ + L L++++++ ++ A ++ + L G +F
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 533 KADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+++ + + + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 586 ISEY-KG-TVITVS 597
+ + KG TVI ++
Sbjct: 182 MHKICKGRTVIIIA 195
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 103/194 (53%), Gaps = 21/194 (10%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 483 LGEHNVL---PNYFEQNQAEALD----LDKTVLETVAEAAEDWRIDDI---KGLLGRCNF 532
+ H++ PN+ + L L++++++ ++ A ++ + L G +F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 533 KADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+++ + + + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 586 ISEY-KG-TVITVS 597
+ + KG TVI ++
Sbjct: 188 MHKICKGRTVIIIA 201
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 35/217 (16%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV- 481
+++ +L + + + L N +L I GE AIIGPNG GKSTLL+L+ G P GE
Sbjct: 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH 69
Query: 482 LLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF--------- 532
LLG++ Q +AL + V+ +E A + + ++ +GR +
Sbjct: 70 LLGQN------LNSWQPKALARTRAVMRQYSELAFPFSVSEVIQ-MGRAPYGGSQDRQAL 122
Query: 533 -----KADML---DRKVSLLSGGEKARLAFCKFMV-----KPST-LLVLDEPTNHLDIPS 578
+ D L R +LSGGE+ R+ + + +P+ L LDEPT+ LD+
Sbjct: 123 QQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYH 182
Query: 579 KE----MLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
++ +L + + V V HD +R++
Sbjct: 183 QQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIM 219
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 24/209 (11%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LP----NYF 493
N NL I+ GE A++GP+G GKSTLL I G+ KP G++ E +V LP N
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 494 EQNQAEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLL 544
Q AL TV + +A E D ++ ++ +L +L+R L
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKML----HIDKLLNRYPWQL 134
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPSKEMLEEAISEYKGTVITVSHDR 600
SGG++ R+A + +VK +L+LDEP ++LD + + L+ E T + V+HD+
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ 194
Query: 601 YFVKQIVNRVVEVK-GSNLQDYAGDYNYY 628
+ +R+ ++ G LQ D YY
Sbjct: 195 AEALAMADRIAVIREGEILQVGTPDEVYY 223
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
+KLENI K + T L ++ + +GK+T L IAG +P SG +
Sbjct: 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 35/219 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + ++ F Y + N E G+ ++G NG GK+TLLK++ GL GE+ L
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL-LAAAGEIFLD 70
Query: 485 EHNVLP-------NYFEQNQAEALDLDKTVLETVAEAAEDW---------RIDDIKGLLG 528
P Y QN + + + TV E VA + E RI + L+G
Sbjct: 71 GSPADPFLLRKNVGYVFQNPSSQI-IGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVG 129
Query: 529 RCNFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLE 583
A D L+ LSGG+K RLA + + + L LDEP + LD PS+ ++LE
Sbjct: 130 LSGLAAADPLN-----LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLE 184
Query: 584 EAISEYKGTVITVSH------DRYFVKQIVNRVVEVKGS 616
+E KG +I V+H D F+ I N ++ GS
Sbjct: 185 SLKNEGKG-IILVTHELEYLDDMDFILHISNGTIDFCGS 222
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAG 145
++L ++S Y G VLKDV E +GKTT L+I+AG
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG 59
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 104/210 (49%), Gaps = 29/210 (13%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LP----N 491
+L ++ GE ++GP+GCGK+T L++I GLE+P G++ +G+ V +P +
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 492 YFEQNQAEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVS 542
Q+ AL TV + +A + D R+ ++ LLG ++L+RK
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT----ELLNRKPR 138
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPSKEMLEEAISEYKGTVITVSH 598
LSGG++ R+A + +V+ + ++DEP ++LD + + L++ + T I V+H
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 599 DRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628
D+ + +R+ + LQ Y
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
+GV+L ++ K + VT +++++ E GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 435 EDRLLFNRANLTIERG-EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493
E RL R N+ E G + ++GP G GKS L+LI G+ KP GEV L ++ P
Sbjct: 8 EKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP 67
Query: 494 EQN------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK---ADMLDRKVSLL 544
E+ Q AL +V +A + + + K A +LDRK + L
Sbjct: 68 ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL 127
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHD 599
SGGE+ R+A + +V LL+LDEP + +D+ +K +L E + E+ ++ V+HD
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 10/174 (5%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
I++GE I+GPNG GK+T +K + G+E+P G++ E ++ Y + Q D + T
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI---EWDLTVAY--KPQYIKADYEGT 363
Query: 507 VLETVAEA-AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
V E +++ A + K L + D+ DR+V+ LSGGE R+A +++ + +
Sbjct: 364 VYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIY 423
Query: 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG 615
+LDEP+ +LD+ + + AI + T + V HD + + +R+ +G
Sbjct: 424 LLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEG 477
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 29/179 (16%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--------GGEVLLGEHNVLPNYFEQ-- 495
++ G I+GPNG GKST +K++ G P G + N L NYFE+
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 496 -------NQAEALDL-----DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
+ + +DL V+E + +A E +++++ L N +L+R++
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN----VLEREIQH 158
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---SEYKGTVITVSHD 599
LSGGE R+A +++ +T DEP+++LDI + AI SE +V+ V HD
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN--- 496
+ +L +E GE I+GP G GK+ L+LI G P G +LL +V E++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 497 ---QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRC-NFKAD-MLDRKVSLLSGGEKAR 551
Q +L V + + +I D K +L + K + +LDR LSGGE+ R
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQR 135
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIV 607
+A + +V +L+LDEP + LD ++E E +S + K TV+ ++HD+ + +
Sbjct: 136 VALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMA 195
Query: 608 NRVVEVKGSNL 618
+R+ V L
Sbjct: 196 DRIAVVMDGKL 206
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 25/193 (12%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472
P + GR + I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI
Sbjct: 332 PIEIKQGR--IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 389
Query: 473 LEKPRGGEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLET------------VAE 513
G++L+ HN+ L N Q + + TV E V E
Sbjct: 390 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 449
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
AA+ D L + + ++ +R V LSGG+K RL+ + + +L+LDE T+
Sbjct: 450 AAKMANAHDFIMNLPQ-GYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSA 507
Query: 574 LDIPSKEMLEEAI 586
LD+ S+ +++EA+
Sbjct: 508 LDLESESIIQEAL 520
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 26/182 (14%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
I +GE I+GPNG GK+T +K++ G+E+P G+V E ++ Y + Q + + T
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV---EWDLTVAY--KPQYIKAEYEGT 433
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADML---------DRKVSLLSGGEKARLAFCKF 557
V E ++ +ID K L +K ++L DR V LSGGE R+A
Sbjct: 434 VYELLS------KIDSSK--LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 485
Query: 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEV 613
+++ + + +LDEP+ +LD+ + + AI + T + V HD + + +R++
Sbjct: 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545
Query: 614 KG 615
+G
Sbjct: 546 EG 547
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE--------VLLGEHNVLPNYFEQ--- 495
++ G I+GPNG GK+T +K++ G P E + N L NYFE+
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173
Query: 496 ------NQAEALDL-DKTVLETVAEAAEDWRIDDIKGLLGRCNFKA--DMLDRKVSLLSG 546
+ + +DL K V V E + ++D++ ++LDR++ LSG
Sbjct: 174 GEIRPVVKPQYVDLLPKAVKGKVRELLK--KVDEVGKFEEVVKELELENVLDRELHQLSG 231
Query: 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
GE R+A +++ + DEP+++LDI + + I V+ V HD
Sbjct: 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 135 GKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180
GKTT ++++AG EEP G K + ++ +A+ Q + TV E
Sbjct: 394 GKTTFVKMLAGVEEPTEG---KVEWDLTVAYKPQYIKAEYEGTVYE 436
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 26/182 (14%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
I +GE I+GPNG GK+T +K++ G+E+P G+V E ++ Y + Q + + T
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV---EWDLTVAY--KPQYIKAEYEGT 419
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADML---------DRKVSLLSGGEKARLAFCKF 557
V E ++ +ID K L +K ++L DR V LSGGE R+A
Sbjct: 420 VYELLS------KIDSSK--LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAAT 471
Query: 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEV 613
+++ + + +LDEP+ +LD+ + + AI + T + V HD + + +R++
Sbjct: 472 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 531
Query: 614 KG 615
+G
Sbjct: 532 EG 533
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE--------VLLGEHNVLPNYFEQ--- 495
++ G I+GPNG GK+T +K++ G P E + N L NYFE+
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
Query: 496 ------NQAEALDL-DKTVLETVAEAAEDWRIDDIKGLLGRCNFKA--DMLDRKVSLLSG 546
+ + +DL K V V E + ++D++ ++LDR++ LSG
Sbjct: 160 GEIRPVVKPQYVDLLPKAVKGKVRELLK--KVDEVGKFEEVVKELELENVLDRELHQLSG 217
Query: 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
GE R+A +++ + DEP+++LDI + + I V+ V HD
Sbjct: 218 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 135 GKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180
GKTT ++++AG EEP G K + ++ +A+ Q + TV E
Sbjct: 380 GKTTFVKMLAGVEEPTEG---KVEWDLTVAYKPQYIKAEYEGTVYE 422
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 22/193 (11%)
Query: 428 KNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
KN+ F Y R + NL ++ G+ A++G +GCGKST ++L+ L P G V +
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 485 EHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN------ 531
++ L E + T+ E + ED +D+I+ + N
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIM 510
Query: 532 ---FKAD-MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
+ D ++ + + LSGG+K R+A + +V+ +L+LDE T+ LD S+ +++ A+
Sbjct: 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570
Query: 588 EYK--GTVITVSH 598
+ + T I ++H
Sbjct: 571 KAREGRTTIVIAH 583
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 27/179 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-----------------GEH 486
+L +++G+ A++G +GCGKST+++L+ P G V L G
Sbjct: 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112
Query: 487 NVLPNYFEQNQAEAL---DLDKTV-LETVAEAAEDWRIDD-IKGLLGRCNFKADMLDRKV 541
+ P F+ + AE + D + V E + AA++ I I L + N + + K
Sbjct: 1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR---VGDKG 1169
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSH 598
+ LSGG+K R+A + +V+ +L+LDE T+ LD S+++++EA+ + + T I ++H
Sbjct: 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH 1228
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 22/193 (11%)
Query: 428 KNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
KN+ F Y R + NL ++ G+ A++G +GCGKST ++L+ L P G V +
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 485 EHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN------ 531
++ L E + T+ E + ED +D+I+ + N
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIM 510
Query: 532 ---FKAD-MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
+ D ++ + + LSGG+K R+A + +V+ +L+LDE T+ LD S+ +++ A+
Sbjct: 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570
Query: 588 EYK--GTVITVSH 598
+ + T I ++H
Sbjct: 571 KAREGRTTIVIAH 583
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 27/179 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-----------------GEH 486
+L +++G+ A++G +GCGKST+++L+ P G V L G
Sbjct: 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112
Query: 487 NVLPNYFEQNQAEAL---DLDKTV-LETVAEAAEDWRIDD-IKGLLGRCNFKADMLDRKV 541
+ P F+ + AE + D + V E + AA++ I I L + N + + K
Sbjct: 1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR---VGDKG 1169
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSH 598
+ LSGG+K R+A + +V+ +L+LDE T+ LD S+++++EA+ + + T I ++H
Sbjct: 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH 1228
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 93/205 (45%), Gaps = 18/205 (8%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
+L I GE + G G GKSTLL+++ GL +P G+VL +N A
Sbjct: 28 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQ 87
Query: 503 ------LDKTVLETVAEAAEDWRIDD-----IKGLLGRCNFKADML-DRKVSLLSGGEKA 550
+ V + VA A +++ D +K + D DR LSGGEK
Sbjct: 88 YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR 147
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIV 607
R+A +V +L+LDEP LD K L + ++K TVI +SHD V V
Sbjct: 148 RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV 207
Query: 608 NRVVEV-KGSNLQDYAGDYNYYLEK 631
+RVV + KG + D G +LEK
Sbjct: 208 DRVVVLEKGKKVFD--GTRMEFLEK 230
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 134 AGKTTQLRIIAGQEEPDSGNVI---------KAKSNMKIAFLSQEFEVSMSRTVREEFMS 184
+GK+T L+I+AG EP SG+V+ + + N+ IAF E + R V +E
Sbjct: 46 SGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAER-VFDEVAF 104
Query: 185 AFKEEMEIAGKLERVQKALESAVDDMD 211
A K + V+KA+E D D
Sbjct: 105 AVKNFYPDRDPVPLVKKAMEFVGLDFD 131
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 93/205 (45%), Gaps = 18/205 (8%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
+L I GE + G G GKSTLL+++ GL +P G+VL +N A
Sbjct: 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQ 85
Query: 503 ------LDKTVLETVAEAAEDWRIDD-----IKGLLGRCNFKADML-DRKVSLLSGGEKA 550
+ V + VA A +++ D +K + D DR LSGGEK
Sbjct: 86 YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR 145
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIV 607
R+A +V +L+LDEP LD K L + ++K TVI +SHD V V
Sbjct: 146 RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV 205
Query: 608 NRVVEV-KGSNLQDYAGDYNYYLEK 631
+RVV + KG + D G +LEK
Sbjct: 206 DRVVVLEKGKKVFD--GTRMEFLEK 228
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 134 AGKTTQLRIIAGQEEPDSGNVI---------KAKSNMKIAFLSQEFEVSMSRTVREEFMS 184
+GK+T L+I+AG EP SG+V+ + + N+ IAF E + R V +E
Sbjct: 44 SGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAER-VFDEVAF 102
Query: 185 AFKEEMEIAGKLERVQKALESAVDDMD 211
A K + V+KA+E D D
Sbjct: 103 AVKNFYPDRDPVPLVKKAMEFVGLDFD 129
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 30/211 (14%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-------GEHNVLPNYFEQN 496
+L I+ GE ++GP+GCGK+T L+ I GLE+P G++ + E V E++
Sbjct: 26 SLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERD 85
Query: 497 -----QAEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVS 542
Q+ AL TV + +A + D R+ ++ LG ++L+RK
Sbjct: 86 VAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLT----ELLNRKPR 141
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPSKEMLEEAISEYKGTVITVSH 598
LSGG++ R+A + +++ + + DEP ++LD + + L++ + T I V+H
Sbjct: 142 ELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTH 201
Query: 599 DRYFVKQIVNRV-VEVKGSNLQDYAGDYNYY 628
D+ +R+ V KG Q D YY
Sbjct: 202 DQVEAXTXGDRIAVXNKGELQQVGTPDEVYY 232
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
VKL NI K + VT +KD++ E GKTT LR IAG EEP G +
Sbjct: 7 VKLINIWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQI 63
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 17/201 (8%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LP----NYFEQNQ 497
+ I GE ++GP+G GK+T+L+LI GLE+P G+V +G V LP N Q
Sbjct: 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQ 94
Query: 498 AEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCNFKADMLDRKVSLLSGGEKAR 551
AL TV + V+ + R+ ++ LL ++ +R LSGG++ R
Sbjct: 95 NYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-YANRFPHELSGGQQQR 153
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHDRYFVKQIV 607
+A + + +L+ DEP +D + L + E T + V+HD+ ++
Sbjct: 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA 213
Query: 608 NRVVEVKGSNLQDYAGDYNYY 628
+RV+ + N++ + Y
Sbjct: 214 DRVLVLHEGNVEQFGTPEEVY 234
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 134 AGKTTQLRIIAGQEEPDSGNV 154
+GKTT LR+IAG E P G+V
Sbjct: 52 SGKTTILRLIAGLERPTKGDV 72
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 32/183 (17%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-------LGEHNVLPNYFEQNQAEALD 502
GE I+GPNG GK+T ++++G G V + PNY
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY---------- 343
Query: 503 LDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556
D TV + + A++D W +++ R N +L+ V+ LSGGE +L
Sbjct: 344 -DGTVQQYLENASKDALSTSSWFFEEVTK---RLNLHR-LLESNVNDLSGGELQKLYIAA 398
Query: 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVE 612
+ K + L VLD+P+++LD+ + ++ +AI E K + HD I +R++
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIV 458
Query: 613 VKG 615
KG
Sbjct: 459 FKG 461
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 30/172 (17%)
Query: 454 AIIGPNGCGKSTLLKLIMGLEKPRGGE--VLLGEHNVLP--------NYFEQNQAEALD- 502
++G NG GK+T+LK++ G P G+ +G+ VL NYF++ + L
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKI 88
Query: 503 -------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
L TV E + + E + D++K LL N + ++ ++LSGG
Sbjct: 89 VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTN----LWNKDANILSGGGL 144
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHD 599
RL +++ + + + D+P+++LD+ + + +AI E VI V HD
Sbjct: 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHD 196
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 31/200 (15%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
K + G E NL I+ GE +I+GP+G GKST+L +I L+KP GEV + N
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI--DN 66
Query: 488 VLPNYFEQNQAEALDLDK--------------TVLETV----------AEAAEDWRIDDI 523
+ N + ++ + DK T LE V A + E+ R +
Sbjct: 67 IKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL 126
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE--- 580
+ L + + K + LSGG++ R+A + + +++ D+PT LD + E
Sbjct: 127 E-CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIM 185
Query: 581 -MLEEAISEYKGTVITVSHD 599
+L++ E TV+ V+HD
Sbjct: 186 QLLKKLNEEDGKTVVVVTHD 205
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+KL+N++K+YK + LK+V +GK+T L II ++P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 154 VI--KAKSN------------MKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLE 197
V K+N KI F+ Q+F + T E E FK ++G+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 198 RVQKALES 205
R ++ALE
Sbjct: 121 RRKRALEC 128
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 31/205 (15%)
Query: 422 RSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
+ +V +++ F Y + + T+ G+ TA++GPNG GKST+ L+ L +P G
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 479 GEVLL-GE------HNVLPNY--------------FEQNQAEALDLDKTVLETVAEAAED 517
G+VLL GE H+ L F +N A L T+ E A A E
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-- 575
D I G + + + LSGG++ +A + +++ LL+LD+ T+ LD
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQ---LSGGQRQAVALARALIRKPRLLILDQATSALDAG 190
Query: 576 --IPSKEMLEEAISEYKGTVITVSH 598
+ + +L E+ TV+ ++H
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITH 215
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 31/185 (16%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
NL I+ GE +I GP+G GKST L +I L+KP GEV + N+ N + ++ +
Sbjct: 24 VNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYI--DNIKTNDLDDDELTKIR 81
Query: 503 LDK--------------TVLETV----------AEAAEDWRIDDIKGLLGRCNFKADMLD 538
DK T LE V A + E+ R ++ L + +
Sbjct: 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALE-CLKXAELEERFAN 140
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVI 594
K + LSGG++ R+A + + +++ DEPT LD + E +L++ E TV+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVV 200
Query: 595 TVSHD 599
V+HD
Sbjct: 201 VVTHD 205
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+KL+N++K+YK + LK+V +GK+T L II ++P G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 154 VI--KAKSN------------MKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLE 197
V K+N KI F+ Q+F + T E E FK +G+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE-E 120
Query: 198 RVQKALES 205
R ++ALE
Sbjct: 121 RRKRALEC 128
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 23/180 (12%)
Query: 433 GYEDRLLFNRANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--L 489
GYE F+ N+ +E GEK I+GPNG GK+TLL+ I GL P G + + V +
Sbjct: 15 GYER---FSLENINLEVNGEKVIILGPNGSGKTTLLRAISGL-LPYSGNIFINGMEVRKI 70
Query: 490 PNY--FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL--------LGRCNFKADMLDR 539
NY + N EA ++ TV + V + +++KGL L ++L R
Sbjct: 71 RNYIRYSTNLPEAYEIGVTVNDIV------YLYEELKGLDRDLFLEMLKALKLGEEILRR 124
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHD 599
K+ LS G+ + + ++ LDEP ++D + ++ I EY I V+H+
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHE 184
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 31/200 (15%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
K + G E NL I+ GE +I+GP+G GKST+L +I L+KP GEV + N
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI--DN 66
Query: 488 VLPNYFEQNQAEALDLDK--------------TVLETV----------AEAAEDWRIDDI 523
+ N + ++ + DK T LE V A + E+ R +
Sbjct: 67 IKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL 126
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE--- 580
+ L + + K + LSGG++ R+A + + +++ D+PT LD + E
Sbjct: 127 E-CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185
Query: 581 -MLEEAISEYKGTVITVSHD 599
+L++ E TV+ V+HD
Sbjct: 186 QLLKKLNEEDGKTVVVVTHD 205
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
VKL+N++K+YK + LK+V +GK+T L II ++P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 154 VI--KAKSN------------MKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLE 197
V K+N KI F+ Q+F + T E E FK ++G+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 198 RVQKALES 205
R ++ALE
Sbjct: 121 RRKRALEC 128
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 27/178 (15%)
Query: 422 RSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
+ +V +++ F Y + + T+ G+ TA++GPNG GKST+ L+ L +P G
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 479 GEVLL-GE------HNVLPNY--------------FEQNQAEALDLDKTVLETVAEAAED 517
G+VLL GE H+ L F +N A L T+ E A A E
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
D I G + + + LSGG++ +A + +++ LL+LD T+ LD
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQ---LSGGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 36/225 (16%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRG 478
G +++IK+L ED+ + +L + GE AI+GPNG GKSTL + G E + G
Sbjct: 17 GSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG 76
Query: 479 GEVLLGEHNVLPNYFEQNQAEALDL------------DKTVLETVAEAAEDWRIDDIKGL 526
G V ++L E E + + ++ L+T A +R +
Sbjct: 77 GTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQET--- 133
Query: 527 LGRCNFKADMLDRKVSLL---------------SGGEKARLAFCKFMVKPSTLLVLDEPT 571
L R +F+ D+++ K++LL SGGEK R + V L +LDE
Sbjct: 134 LDRFDFQ-DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 192
Query: 572 NHLDIPSKEMLEEAIS---EYKGTVITVSHDRYFVKQIVNRVVEV 613
+ LDI + +++ + ++ + K + I V+H + + I V V
Sbjct: 193 SGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV 237
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 24/197 (12%)
Query: 425 VTIKNLEFGYEDRLL--FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V +N+ F Y R + NL I G+ A++G +G GKST+ LI GE+L
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKA 534
+ H++ L N + TV +A A E + + I+ R +
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEA-ARMAYAM 460
Query: 535 DMLDRKVS-----------LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
D +++ + LLSGG++ R+A + +++ S +L+LDE T+ LD S+ ++
Sbjct: 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520
Query: 584 EAISEYKG--TVITVSH 598
A+ E + T + ++H
Sbjct: 521 AALDELQKNRTSLVIAH 537
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 37/199 (18%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
+ GE ++GPNG GKSTLL + G+ +G G+ E A L L +
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQ------PLEAWSATKLALHRA 76
Query: 507 VL---ETVAEAAEDWR--------------IDDIKGLLGRCNFKADMLDRKVSLLSGGE- 548
L +T A W ++D+ G L D L R + LSGGE
Sbjct: 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD----DKLGRSTNQLSGGEW 132
Query: 549 -KARLAFCKFMVKPST-----LLVLDEPTNHLDIPSKEMLEE---AISEYKGTVITVSHD 599
+ RLA + P LL+LD+P N LD+ + L++ A+S+ ++ SHD
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192
Query: 600 RYFVKQIVNRVVEVKGSNL 618
+ +R +KG +
Sbjct: 193 LNHTLRHAHRAWLLKGGKM 211
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 98/196 (50%), Gaps = 22/196 (11%)
Query: 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V +K++ F Y+ ++ + + +I +G+ A++G +G GKST+ L G +
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCN--- 531
L H+V L +F + T+ +A AAE ++ + I+ + +
Sbjct: 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAME 461
Query: 532 FKADM---LDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
F +M LD + + LSGG++ R+A + +++ + +L+LDE T+ LD S+ ++
Sbjct: 462 FIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521
Query: 585 AISEYK--GTVITVSH 598
A+ E + TV+ ++H
Sbjct: 522 ALDELQKNKTVLVIAH 537
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG-----GEVLLGEHN--VLPNYFEQ 495
NL IE+GE AI G G GK++LL LI+G LE G G V ++P ++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555
N + D+ ++V +A + + DI + N +L LSGG++AR++
Sbjct: 118 NIISGVSYDEYRYKSVVKACQLQQ--DITKFAEQDN---TVLGEGGVTLSGGQRARISLA 172
Query: 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+ + K + L +LD P +LD+ ++E + E+
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG-----GEVLLGEHN--VLPNYFEQ 495
NL IE+GE AI G G GK++LL LI+G LE G G V ++P ++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555
N + D+ ++V +A + + DI + N +L LSGG++AR++
Sbjct: 118 NIIRGVSYDEYRYKSVVKACQLQQ--DITKFAEQDN---TVLGEGGVTLSGGQRARISLA 172
Query: 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+ + K + L +LD P +LD+ ++E + E+
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 428 KNLEFGYEDRLL--FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+N+ F Y R + NL I G+ A++G +G GKST+ LI G +L+
Sbjct: 345 RNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404
Query: 486 HNV-------LPNYFEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADML 537
H++ L N + TV +A A E++ + I+ R + D +
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA-ARMAYAMDFI 463
Query: 538 DRKVS-----------LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
++ + LLSGG++ R+A + +++ S +L+LDE T+ LD S+ ++ A+
Sbjct: 464 NKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 587 SEYKG--TVITVSHDRYFVKQ 605
E + T + ++H ++Q
Sbjct: 524 DELQKNRTSLVIAHRLSTIEQ 544
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 36/222 (16%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEV 481
+++IK+L ED+ + +L + GE AI+GPNG GKSTL + G E + GG V
Sbjct: 1 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 482 LLGEHNVLPNYFEQNQAEALDL------------DKTVLETVAEAAEDWRIDDIKGLLGR 529
++L E E + + ++ L+T A +R + L R
Sbjct: 61 EFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQET---LDR 117
Query: 530 CNFKADMLDRKVSLL---------------SGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+F+ D+++ K++LL SGGEK R + V L +LDE + L
Sbjct: 118 FDFQ-DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL 176
Query: 575 DIPSKEMLEEAIS---EYKGTVITVSHDRYFVKQIVNRVVEV 613
DI + +++ + ++ + K + I V+H + + I V V
Sbjct: 177 DIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV 218
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 20/157 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++P
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQFSWIMPGT 114
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
++N + D+ +V +A + +DI + N +L LSGG++AR+
Sbjct: 115 IKENIIAGVSYDEYRYRSVIKACQ--LEEDISKFAEKDNI---VLGEGGITLSGGQRARI 169
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAISE 588
+ + + K + L +LD P +LD+ + KE+ E + +
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 206
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 83 SNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRI 142
+N++++ G S+S N S G VLKD+ ++ AGKT+ L +
Sbjct: 30 NNRKTSNGDDSLS----FSNFS--LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMM 83
Query: 143 IAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
I G+ EP G K K + +I+F SQ F M T++E ++
Sbjct: 84 IMGELEPSEG---KIKHSGRISFCSQ-FSWIMPGTIKENIIAG 122
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 35/233 (15%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + I +L +++ + N +L+++ GE IIG +GCGK+TLL+ + G E+P GE+
Sbjct: 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 483 LGEHNVLPNYFEQN--------------QAEALDLDKTVLETVA---------EAAEDWR 519
L + F +N Q L TV +A A E R
Sbjct: 63 LSGKTI----FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR 118
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
I+ + L G +++ R LSGG++ R A + + L++LDEP + LD +
Sbjct: 119 IEAMLELTG----ISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174
Query: 580 EMLEE----AISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628
+ E A+ + + VSHDR Q +R+ +K + A + Y
Sbjct: 175 RQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELY 227
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+++ + + ++SKS++ VL D++ GKTT LR +AG E+PDSG
Sbjct: 1 MTAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 154 V 154
+
Sbjct: 61 I 61
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 81/196 (41%), Gaps = 37/196 (18%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
+ GE ++GPNG GKSTLL G +G G+ E A L L +
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQ------PLEAWSATKLALHRA 76
Query: 507 VL---ETVAEAAEDWR--------------IDDIKGLLGRCNFKADMLDRKVSLLSGGE- 548
L +T A W ++D+ G L D L R + LSGGE
Sbjct: 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD----DKLGRSTNQLSGGEW 132
Query: 549 -KARLAFCKFMVKPST-----LLVLDEPTNHLDIPSKEMLEE---AISEYKGTVITVSHD 599
+ RLA + P LL+LDEP N LD+ + L++ A+S+ ++ SHD
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHD 192
Query: 600 RYFVKQIVNRVVEVKG 615
+ +R +KG
Sbjct: 193 LNHTLRHAHRAWLLKG 208
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG-----GEVLLGEHN--VLPNYFEQ 495
NL IE+GE AI G G GK++LL LI+G LE G G V ++P ++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555
N + D+ ++V +A + + DI + N +L LSGG++AR++
Sbjct: 118 NIIFGVSYDEYRYKSVVKACQLQQ--DITKFAEQDN---TVLGEGGVTLSGGQRARISLA 172
Query: 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+ + K + L +LD P +LD+ ++E + E+
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 27/200 (13%)
Query: 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++ L + Y D N+ I+RGE TAI+G NG GKSTL + G+ KP G +L
Sbjct: 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 483 LGEHNV-------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRI--DDIK--- 524
+ + F+ + +V + V+ A + ++ D+I+
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQL--FSASVYQDVSFGAVNMKLPEDEIRKRV 124
Query: 525 -GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS----K 579
L R + + D+ LS G+K R+A +V +L+LDEPT LD
Sbjct: 125 DNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183
Query: 580 EMLEEAISEYKGTVITVSHD 599
++L E E T+I +HD
Sbjct: 184 KLLVEMQKELGITIIIATHD 203
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 44/218 (20%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
IK + GYE + +L++++GE +IIG +G GKSTLL ++ L+ P G+V L
Sbjct: 10 IKKVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGK 66
Query: 487 NVLPNYFEQNQAEALDLDK--------------TVLETVA-----------EAAE--DWR 519
V +Y + + L K T LE V EA E ++
Sbjct: 67 EV--DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL 124
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
+ ++ GL D L RK LSGGE+ R+A + + LL DEPT +LD +
Sbjct: 125 LSEL-GL-------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT 176
Query: 580 EMLEEA---ISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ + + I+E +++ V+H+R ++ +R +E+K
Sbjct: 177 KRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMK 213
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 20/157 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++P
Sbjct: 40 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQFSWIMPGT 96
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
++N + D+ +V +A + +DI + N +L LSGG++AR+
Sbjct: 97 IKENIIFGVSYDEYRYRSVIKACQ--LEEDISKFAEKDNI---VLGEGGITLSGGQRARI 151
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAISE 588
+ + + K + L +LD P +LD+ + KE+ E + +
Sbjct: 152 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 188
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
V +EN++ ++ G VLKD+ ++ AGKT+ L +I G+ EP G
Sbjct: 19 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--- 75
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFM 183
K K + +I+F SQ F M T++E +
Sbjct: 76 KIKHSGRISFCSQ-FSWIMPGTIKENII 102
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG-----GEVLLGEHN--VLPNYFEQ 495
NL IE+GE AI G G GK++LL LI+G LE G G V ++P ++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555
N + D+ ++V +A + + DI + N +L LSGG++AR++
Sbjct: 118 NIIFGVSYDEYRYKSVVKACQLQQ--DITKFAEQDN---TVLGEGGVTLSGGQRARISLA 172
Query: 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+ + K + L +LD P +LD+ ++E + E+
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 21/157 (13%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++ QN + +
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQN---SWIM 111
Query: 504 DKTVLETVAEAAED-WRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKARL 552
T+ E + + D +R + ++ C + D+ L LSGG++AR+
Sbjct: 112 PGTIKENIIGVSYDEYR---YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAISE 588
+ + + K + L +LD P +LD+ + KE+ E + +
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 106 SYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAF 165
S G VLKD+ ++ AGKT+ L +I G+ EP G K K + +I+F
Sbjct: 47 SLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG---KIKHSGRISF 103
Query: 166 LSQEFEVSMSRTVREEFMSAFKEE 189
SQ + M T++E + +E
Sbjct: 104 CSQNSWI-MPGTIKENIIGVSYDE 126
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 21/157 (13%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++ QN + +
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQN---SWIM 111
Query: 504 DKTVLETVAEAAED-WRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKARL 552
T+ E + + D +R + ++ C + D+ L LSGG++AR+
Sbjct: 112 PGTIKENIIGVSYDEYR---YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAISE 588
+ + + K + L +LD P +LD+ + KE+ E + +
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 83 SNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRI 142
+N++++ G S+S N S G VLKD+ ++ AGKT+ L +
Sbjct: 30 NNRKTSNGDDSLS----FSNFS--LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMM 83
Query: 143 IAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189
I G+ EP G K K + +I+F SQ + M T++E + +E
Sbjct: 84 IMGELEPSEG---KIKHSGRISFCSQNSWI-MPGTIKENIIGVSYDE 126
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 20/157 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++P
Sbjct: 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQFSWIMPGT 84
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
++N + D+ +V +A + +DI + N +L LSGG++AR+
Sbjct: 85 IKENIIFGVSYDEYRYRSVIKACQ--LEEDISKFAEKDNI---VLGEGGITLSGGQRARI 139
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAISE 588
+ + + K + L +LD P +LD+ + KE+ E + +
Sbjct: 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
V +EN++ ++ G VLKD+ ++ AGKT+ L +I G+ EP G
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--- 63
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFM 183
K K + +I+F SQ F M T++E +
Sbjct: 64 KIKHSGRISFCSQ-FSWIMPGTIKENII 90
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
I++L GY D+ + R +TIE+G GPNG GK+TLLK I KP GE++ +
Sbjct: 13 IRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII---Y 68
Query: 487 NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD-------- 538
N +P + + + L + ++ + ED+ + + L G K +++D
Sbjct: 69 NGVP--ITKVKGKIFFLPEEIIVPRKISVEDY-LKAVASLYGVKVNKNEIMDALESVEVL 125
Query: 539 ---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGT 592
+K+ LS G R+ ++ + + VLD+P +D SK + ++I E KG
Sbjct: 126 DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185
Query: 593 VITVSHD 599
VI S +
Sbjct: 186 VIISSRE 192
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 27/178 (15%)
Query: 422 RSVVTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
+ +V +++ F Y + + T+ G+ TA++GPNG GKST+ L+ L +P G
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 479 GEVLL-GE------HNVLPNY--------------FEQNQAEALDLDKTVLETVAEAAED 517
G+VLL GE H+ L F +N A L T+ E A A E
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
D I G + + ++++ G++ +A + +++ LL+LD T+ LD
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLAV---GQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 37/196 (18%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
+ GE ++GPNG GKSTLL G +G G+ E A L L +
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQ------PLEAWSATKLALHRA 76
Query: 507 VL---ETVAEAAEDWR--------------IDDIKGLLGRCNFKADMLDRKVSLLSGGE- 548
L +T A W ++D+ G L D L R + LSGGE
Sbjct: 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----LDDKLGRSTNQLSGGEW 132
Query: 549 -KARLAFCKFMVKPST-----LLVLDEPTNHLDIPSKEMLEE---AISEYKGTVITVSHD 599
+ RLA + P LL+LDEP N LD+ + L++ A+ + ++ SHD
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHD 192
Query: 600 RYFVKQIVNRVVEVKG 615
+ +R +KG
Sbjct: 193 LNHTLRHAHRAWLLKG 208
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 41/194 (21%)
Query: 445 LTIERGEKT-----AIIGPNGCGKSTLLKLIMGLEKPRGGE------VLLGEHNVLPN-- 491
L +E GE + ++G NG GK+TL+KL+ G KP G+ V + + P
Sbjct: 368 LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP 427
Query: 492 ------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
+F++ + + L+ + + + RIDDI +D++V LS
Sbjct: 428 GTVRQLFFKKIRGQFLN-----PQFQTDVVKPLRIDDI-------------IDQEVQHLS 469
Query: 546 GGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPSKEMLEEAISEYKGTVITVSHDRY 601
GGE R+A + P+ + ++DEP+ +LD I +++ I K T V HD
Sbjct: 470 GGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529
Query: 602 FVKQIVNRVVEVKG 615
+ ++V+ +G
Sbjct: 530 MATYLADKVIVFEG 543
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE----------VLLGEHNVLPNYFE- 494
T G+ ++G NG GKST LK++ G +KP G + + L NYF
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158
Query: 495 --QNQAEAL-------DLDKTVLETVAEAAEDWRI------DDIKGLLGRCNFKADMLDR 539
++ +A+ ++ + + V + E ++ +D+K + + ++L R
Sbjct: 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE-NVLKR 217
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVIT 595
+ LSGGE R A V+ + + + DEP+++LD+ + +++ ++ K VI
Sbjct: 218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK-YVIC 276
Query: 596 VSHD 599
V HD
Sbjct: 277 VEHD 280
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 37/199 (18%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
+ GE ++GPNG GKSTLL + G+ +G G+ E A L L +
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQ------PLEAWSATKLALHRA 76
Query: 507 VL---ETVAEAAEDWR--------------IDDIKGLLGRCNFKADMLDRKVSLLSGGE- 548
L +T A W ++D+ G L D L R + LSGGE
Sbjct: 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----LDDKLGRSTNQLSGGEW 132
Query: 549 -KARLAFCKFMVKPST-----LLVLDEPTNHLDIPSKEMLEE---AISEYKGTVITVSHD 599
+ RLA + P LL+LD+P LD+ + L++ A+S+ ++ SHD
Sbjct: 133 QRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHD 192
Query: 600 RYFVKQIVNRVVEVKGSNL 618
+ +R +KG +
Sbjct: 193 LNHTLRHAHRAWLLKGGKM 211
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 33/226 (14%)
Query: 417 RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
RG ++ + L+ + + N+ I GE +IGP+G GKST L+ + LE
Sbjct: 17 RGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF 76
Query: 477 RGGEVLLGEHNVLPNYFEQNQAEA----------LDLDKTVLETVAEAAEDWRIDDIKGL 526
GE+++ N+ N+ L TVL + A R K
Sbjct: 77 DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR----KWP 132
Query: 527 LGRCNFKADMLDRKVSL----------LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
+ KA L KV L LSGG+ R+A + + +++ DEPT+ LD
Sbjct: 133 REKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD- 191
Query: 577 PSKEMLEEAISEYKG------TVITVSHDRYFVKQIVNRVVEVKGS 616
EM+ E +S K T++ V+H+ F +++ +RV+ + G
Sbjct: 192 --PEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGG 235
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 38/208 (18%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488
N +L + G+ +IG +G GKSTL++ + LE+P G VL+ +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 489 ---LPNYFEQ-----------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA 534
+ F+ N A L+LD T + V R+ ++ L+G
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-----RVTELLSLVGL----G 131
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYK 590
D D S LSGG+K R+A + + +L+ DE T+ LD + E+L++
Sbjct: 132 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 591 GTVITVSHDRYFVKQIVNRVVEVKGSNL 618
T++ ++H+ VK+I + V + L
Sbjct: 192 LTILLITHEMDVVKRICDCVAVISNGEL 219
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + + L +V+ AGK+T +R + E P G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 154 VIK-------------AKSNMKIAFLSQEFEVSMSRTV 178
V+ K+ +I + Q F + SRTV
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 99
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 38/208 (18%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488
N +L + G+ +IG +G GKSTL++ + LE+P G VL+ +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 489 ---LPNYFEQ-----------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA 534
+ F+ N A L+LD T + V R+ ++ L+G
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-----RVTELLSLVGL----G 154
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYK 590
D D S LSGG+K R+A + + +L+ D+ T+ LD + E+L++
Sbjct: 155 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 591 GTVITVSHDRYFVKQIVNRVVEVKGSNL 618
T++ ++H+ VK+I + V + L
Sbjct: 215 LTILLITHEXDVVKRICDCVAVISNGEL 242
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + + L +V+ AGK+T +R + E P G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 154 VIK-------------AKSNMKIAFLSQEFEVSMSRTV 178
V+ K+ +I + Q F + SRTV
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTV 122
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 415 PERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-- 471
P R + GR + +N+ F Y D R + T+ G+ A++GP+G GKST+L+L+
Sbjct: 46 PLRFQKGR--IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF 103
Query: 472 -----GLEKPRGGEV-------LLGEHNVLPN---YFEQNQAEALDLDKTVL--ETVAEA 514
G + G ++ L V+P F A+ + + + V A
Sbjct: 104 YDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAA 163
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
A+ I D ++ + +R + LSGGEK R+A + ++K +++LDE T+ L
Sbjct: 164 AQAAGIHDAIMAFPE-GYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSAL 221
Query: 575 DIPSKEMLEEAISEYKG--TVITVSH 598
D ++ ++ ++++ T I V+H
Sbjct: 222 DTSNERAIQASLAKVCANRTTIVVAH 247
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 22/154 (14%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
NL IE+GE AI G G GK++LL LI+G LE G + +H+ ++ Q +
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG----IIKHSGRVSFCSQF---SWI 110
Query: 503 LDKTVLETVAEAAED-WRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEKAR 551
+ T+ E + + D +R K ++ C + D+ L LSGG++AR
Sbjct: 111 MPGTIKENIIGVSYDEYR---YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 167
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
++ + + K + L +LD P +LD+ ++E + E+
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 201
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 33/199 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA--- 500
N+ I GE +IGP+G GKST L+ + LE GE+++ N+ N+
Sbjct: 23 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 82
Query: 501 -------LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL---------- 543
L TVL + A R K + KA L KV L
Sbjct: 83 MVFQRFNLFPHMTVLNNITLAPMKVR----KWPREKAEAKAMELLDKVGLKDKAHAYPDS 138
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG------TVITVS 597
LSGG+ R+A + + +++ DEPT+ LD EM+ E +S K T++ V+
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALD---PEMVGEVLSVMKQLANEGMTMVVVT 195
Query: 598 HDRYFVKQIVNRVVEVKGS 616
H+ F +++ +RV+ + G
Sbjct: 196 HEMGFAREVGDRVLFMDGG 214
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 38/208 (18%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488
N +L + G+ +IG +G GKSTL++ + LE+P G VL+ +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 489 ---LPNYFEQ-----------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA 534
+ F+ N A L+LD T + V R+ ++ L+G
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-----RVTELLSLVGL----G 154
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYK 590
D D S LSGG+K R+A + + +L+ D+ T+ LD + E+L++
Sbjct: 155 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 591 GTVITVSHDRYFVKQIVNRVVEVKGSNL 618
T++ ++H+ VK+I + V + L
Sbjct: 215 LTILLITHEMDVVKRICDCVAVISNGEL 242
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + + L +V+ AGK+T +R + E P G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 154 VIK-------------AKSNMKIAFLSQEFEVSMSRTV 178
V+ K+ +I + Q F + SRTV
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 122
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 21/157 (13%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++P
Sbjct: 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQFSWIMPGT 84
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
++N + D+ +V +A + +DI + N +L LSGG++AR+
Sbjct: 85 IKENII-GVSYDEYRYRSVIKACQ--LEEDISKFAEKDNI---VLGEGGITLSGGQRARI 138
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAISE 588
+ + + K + L +LD P +LD+ + KE+ E + +
Sbjct: 139 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 175
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVI 155
V +EN++ ++ G VLKD+ ++ AGKT+ L +I G+ EP G
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--- 63
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189
K K + +I+F SQ F M T++E + +E
Sbjct: 64 KIKHSGRISFCSQ-FSWIMPGTIKENIIGVSYDE 96
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 23/197 (11%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 LGEHNV----LPNYFEQ----NQAEALDLDKTVLETVAEAAED-------WRIDDIKGLL 527
+ + L N+ Q +Q A+ + T+ E + E W++ D+
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAI-MAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 528 GRCNFKADMLDRKVS----LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
D L+ +V +SGG++ RLA + ++ +L+LDE T LD S+ M++
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 584 EAI-SEYKG-TVITVSH 598
+A+ S KG T + ++H
Sbjct: 180 KALDSLMKGRTTLVIAH 196
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++P
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQFSWIMPGT 114
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
++N + D+ +V +A + +DI + N +L LS G++A++
Sbjct: 115 IKENIIFGVSYDEYRYRSVIKACQ--LEEDISKFAEKDNI---VLGEGGITLSEGQQAKI 169
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAISE 588
+ + + K + L +LD P +LD+ + KE+ E + +
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 206
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 109 GVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VLKD+ ++ AGKT+ L +I G+ EP G K K + +I+F SQ
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG---KIKHSGRISFCSQ 106
Query: 169 EFEVSMSRTVREEFM 183
F M T++E +
Sbjct: 107 -FSWIMPGTIKENII 120
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 37/212 (17%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV--- 72
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDDIKGLLGRCNFKA-------DM 536
F +N E + ++ + E A +R + I+ L F A +M
Sbjct: 73 ------TVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM 126
Query: 537 LDRKVSLLSGGEKAR--------------LAFCKFMVKPSTLLVLDEPTNHLDIPS---- 578
++R + GEK + L MV P L +LDEPT+ LD+ +
Sbjct: 127 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR-LAILDEPTSGLDVLNAREV 185
Query: 579 KEMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
+++L++A S+ T++ SH+ V+ + +R+
Sbjct: 186 RKILKQA-SQEGLTILVSSHNMLEVEFLCDRI 216
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 27/188 (14%)
Query: 425 VTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V+ +N+EF Y + + + N +++ G A++G G GKSTL+ LI L P G V
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
+ E +V L + E + T+ E + ED D+I A
Sbjct: 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIV----EAAKIAQ 457
Query: 536 MLDRKVSL--------------LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
+ D +SL SGG+K RL+ + +VK +L+LD+ T+ +D +++
Sbjct: 458 IHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKR 517
Query: 582 LEEAISEY 589
+ + + Y
Sbjct: 518 ILDGLKRY 525
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 30/211 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-----LEKPR 477
S + I++L + + NL + +GE A++GPNG GKSTL K++ G +E+
Sbjct: 2 SQLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER-- 59
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLD-KTVLETVAEAAEDWRIDDIKGLLGR------- 529
GE+LL N+L ++ + L L + +E ++ ++ LGR
Sbjct: 60 -GEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEF 118
Query: 530 ---CNFKADMLDRKVSLL--------SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
++LD S L SGGEK R + +V T VLDE + LDI +
Sbjct: 119 WTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA 178
Query: 579 KEMLEEAISEYKGT---VITVSHDRYFVKQI 606
+++ ++ +G + ++H + + I
Sbjct: 179 LKVVARGVNAMRGPNFGALVITHYQRILNYI 209
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
N IERG+ A+ G G GK++LL +IMG +P G++ +H+ ++P
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQFSWIMPGT 114
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
++N + D+ +V +A + +DI + N +L LS G++A++
Sbjct: 115 IKENII-GVSYDEYRYRSVIKACQ--LEEDISKFAEKDNI---VLGEGGITLSEGQQAKI 168
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAISE 588
+ + + K + L +LD P +LD+ + KE+ E + +
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 109 GVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VLKD+ ++ AGKT+ L +I G+ EP G K K + +I+F SQ
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG---KIKHSGRISFCSQ 106
Query: 169 EFEVSMSRTVREEFMSAFKEE 189
F M T++E + +E
Sbjct: 107 -FSWIMPGTIKENIIGVSYDE 126
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL-- 501
N I G A++G G GKST+ KL+ G ++ +G NV N + +N ++
Sbjct: 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG-DIKIGGKNV--NKYNRNSIRSIIG 96
Query: 502 --------------------DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541
LD T E + D I+ L + + ++ K
Sbjct: 97 IVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWD---TIVGNKG 153
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
LSGGE+ R+A + ++K +++ DE T+ LD ++ + ++A+ + + T+I ++H
Sbjct: 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH 212
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 103/223 (46%), Gaps = 22/223 (9%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEV 481
+T++N F + D N +I G A++G GCGKS+LL ++ ++K G
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 482 LLGEHNVLP-------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA 534
+ G +P + +N L++ +V +A + D++ L +
Sbjct: 64 IKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACA--LLPDLEIL--PSGDRT 119
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--- 591
++ ++ V+ LSGG+K R++ + + + + + D+P + +D + + E + KG
Sbjct: 120 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178
Query: 592 --TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632
T I V+H ++ Q V+ ++ + G + + G Y L ++
Sbjct: 179 NKTRILVTHSMSYLPQ-VDVIIVMSGGKISEM-GSYQELLARD 219
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 33/217 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG----GEVLLGEHNVL---------- 489
+L I TAI+G + GKST+++ + P G G VL ++L
Sbjct: 28 SLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKI 87
Query: 490 --------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI------KGLLGRCNFKAD 535
P +Q+ + + + +TV W ++ K + R N +A
Sbjct: 88 RWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEA- 146
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---- 591
+L+ LSGG K R+ ++ +L+LDEPT+ LD+ ++ + + + E K
Sbjct: 147 VLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKI 206
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628
T+I V+HD ++ ++V + G NL +Y + +
Sbjct: 207 TLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIF 243
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 27/170 (15%)
Query: 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEHNVLPNYF 493
+ + + + + I +G+K + G NG GK+TLL ++ E G V L G+ Y
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYS 91
Query: 494 EQNQAEALD-LDKTVLETVAEAAEDWRIDD--IKGLLGRCNFKADMLD------------ 538
+ + + + ++LE E R+ D I G D+ D
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGE---RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKL 148
Query: 539 --------RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
+ + LS GEK R+ + + +L+LDEP LD ++E
Sbjct: 149 VGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARE 198
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNV 154
++L+ I + +G T+LK ++W+ AGKTT L I+ E SG V
Sbjct: 22 IQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 538 DRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
+R ++ LSGGE+ RLA ++ +LL+LDEPT +LD + L + Y
Sbjct: 263 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 322
Query: 592 T---VITVSHD 599
VI VSHD
Sbjct: 323 KIPQVILVSHD 333
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 538 DRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
+R ++ LSGGE+ RLA ++ +LL+LDEPT +LD + L + Y
Sbjct: 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 302
Query: 592 T---VITVSHD 599
VI VSHD
Sbjct: 303 KIPQVILVSHD 313
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 419 RSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
R R + KN+ F Y+ + + I+ G+K A++GP G GK+T++ L+M
Sbjct: 349 REVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408
Query: 478 GGEVLLGEHNVLP-NYFEQNQAEALDLDKTVL--ETVAE-------AAEDWRIDDIKGLL 527
G++L+ ++ + + L T+L TV E A D I + L
Sbjct: 409 RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLT 468
Query: 528 GRCNFKADMLDRKVSL-------LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
+F + + ++ LS G++ LA + + +L+LDE T+++D +++
Sbjct: 469 HSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEK 528
Query: 581 MLEEAI 586
++ A+
Sbjct: 529 SIQAAM 534
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 538 DRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
+R ++ LSGGE+ RLA ++ +LL+LDEPT +LD + L + Y
Sbjct: 78 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 137
Query: 592 T---VITVSHD 599
VI VSHD
Sbjct: 138 KIPQVILVSHD 148
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 538 DRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
+R ++ LSGGE+ RLA ++ +LL+LDEPT +LD + L + Y
Sbjct: 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 111
Query: 591 --GTVITVSHD 599
VI VSHD
Sbjct: 112 KIPQVILVSHD 122
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++ +G+ T IIGPNG GKSTL+ +I G K G V
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 39/184 (21%)
Query: 463 KSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK----------------- 505
KST L+ I LEKP G +++ N+ + Q + D ++
Sbjct: 45 KSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104
Query: 506 ----TVLETVAEAA--------EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553
TVLE V EA D R +K L + + LSGG++ R++
Sbjct: 105 WSHMTVLENVMEAPIQVLGLSKHDARERALK-YLAKVGIDERAQGKYPVHLSGGQQQRVS 163
Query: 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA------ISEYKGTVITVSHDRYFVKQIV 607
+ + +L+ DEPT+ LD E++ E ++E T++ V+H+ F + +
Sbjct: 164 IARALAMEPDVLLFDEPTSALD---PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS 220
Query: 608 NRVV 611
+ V+
Sbjct: 221 SHVI 224
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 95/238 (39%), Gaps = 26/238 (10%)
Query: 102 NISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
++ K Y G VLK V+ + +GK+T LR I E+P G +I N+
Sbjct: 11 DLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNI 70
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK--LERVQKALESAVDDMDLMGRLLDE 219
+ VR++ ++++A K L ++ L +L +
Sbjct: 71 NL--------------VRDK-----DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL 111
Query: 220 FDLLQRKAQAVNLDTLDA--KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
++++ Q + L DA + K + ++G + S G Q R+S+ +
Sbjct: 112 ENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 171
Query: 278 XXXXXXXEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
EPT+ LD + + E L L ++ MV+++H+ F + + ++ G
Sbjct: 172 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 229
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 538 DRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
+R ++ LSGGE+ RLA ++ +LL+LDEPT +LD + L + Y
Sbjct: 83 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 142
Query: 592 T---VITVSHD 599
VI VSHD
Sbjct: 143 KIPQVILVSHD 153
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++ +G+ T IIGPNG GKSTL+ +I G K G V
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 20/165 (12%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ +++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 484 GEHNVL--PNYFEQNQAEALDLDK-------TVLETVAEAAEDWR--------IDDIKGL 526
++ P + AL + TV E + A + + ++ I L
Sbjct: 66 NGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSL 125
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
R + L LSGGE+ LA + + LL DEP+
Sbjct: 126 FPRLKERLKQLG---GTLSGGEQQXLAIGRALXSRPKLLXXDEPS 167
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++ +G+ T IIGPNG GKSTL+ +I G K G V
Sbjct: 26 VSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 538 DRKVSLLSGGEKA----RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE-YKGT 592
D+K+SLLSGGEKA L F +KPS VLDE + LD + E + + E K T
Sbjct: 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHT 273
Query: 593 -VITVSHDR 600
I ++H++
Sbjct: 274 QFIVITHNK 282
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
F R +L TAI+GPNG GKS ++ I
Sbjct: 14 FGRPSLIGFSDRVTAIVGPNGSGKSNIIDAI 44
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 538 DRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
+R ++ L GGE+ RLA ++ +LL+LDEPT +LD + L + Y
Sbjct: 48 ERPLTFLRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 107
Query: 591 --GTVITVSHD 599
VI VSHD
Sbjct: 108 KIPQVILVSHD 118
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 29/187 (15%)
Query: 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T+K+L Y + + + +I G++ ++G G GKSTLL + L G +
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQI 79
Query: 483 LG-------------EHNVLPN-YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL-- 526
G V+P F + +LD + E W++ D GL
Sbjct: 80 DGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEI---WKVADEVGLRS 136
Query: 527 -----LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
G+ +F +L +LS G K + + ++ + +L+LDEP+ HLD + ++
Sbjct: 137 VIEQFPGKLDF---VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 582 LEEAISE 588
+ + +
Sbjct: 194 IRRTLKQ 200
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 492 YFEQNQAEALDLDKTVLETVAEAAEDWR-IDDIK---GLLGRCNFKADMLDRKVSLLSGG 547
Y +N ++ LD+ TV EA E ++ I IK +L L + + LSGG
Sbjct: 756 YKGKNISDILDM------TVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGG 809
Query: 548 EKARLAFCKFMVK---PSTLLVLDEPTNHLDIPSKEMLEEAIS---EYKGTVITVSHDRY 601
E R+ + K TL +LDEPT L L E + + TVI + H+
Sbjct: 810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869
Query: 602 FVKQ 605
+K
Sbjct: 870 VIKN 873
>pdb|3UQZ|A Chain A, X-Ray Structure Of Dna Processing Protein A (Dpra) From
Streptococcus Pneumoniae
pdb|3UQZ|B Chain B, X-Ray Structure Of Dna Processing Protein A (Dpra) From
Streptococcus Pneumoniae
pdb|3UQZ|C Chain C, X-Ray Structure Of Dna Processing Protein A (Dpra) From
Streptococcus Pneumoniae
Length = 288
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 438 LLFNRANLTIERGEKTAIIGPNGC---GKSTLLKLIMGLE 474
LLF + NL + + K A++G C G ++ K+I GLE
Sbjct: 94 LLFYKGNLDLLKFPKVAVVGSRACSKQGAKSVEKVIQGLE 133
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 544 LSGGEKARLAFCKFMVKPSTLL-------VLDEPTNHLDIPSKEMLEEAISEYKGT--VI 594
LSGGE+ +A + + L+ +LDEPT +LD + L E + K +I
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 595 TVSHDR 600
++H R
Sbjct: 341 IITHHR 346
>pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
Length = 318
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNY 492
Y R F R N E+ ++ P +L +L L R V + N ++
Sbjct: 168 AYMPRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDF 227
Query: 493 FEQNQAEALD-LDKTVLETVAEAAEDWRIDDIKGLL 527
++Q+EALD LDK T A R+++I G+L
Sbjct: 228 NARSQSEALDELDKLGFTTNKNRA---RVNNIDGVL 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,930,015
Number of Sequences: 62578
Number of extensions: 586825
Number of successful extensions: 2371
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 2042
Number of HSP's gapped (non-prelim): 302
length of query: 692
length of database: 14,973,337
effective HSP length: 106
effective length of query: 586
effective length of database: 8,340,069
effective search space: 4887280434
effective search space used: 4887280434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)