Query 005532
Match_columns 692
No_of_seqs 370 out of 4686
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 17:55:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005532.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2041-2045//hhsearch_pdb/005532hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 654.8 46.9 492 94-632 412-1306(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 614.0 51.8 491 95-631 385-1259(1284)
3 2iw3_A Elongation factor 3A; a 1.0 1 1 612.6 44.3 430 96-625 434-983 (986)
4 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 575.1 36.5 432 98-630 21-493 (538)
5 3bk7_A ABC transporter ATP-bin 1.0 1 1 573.8 36.7 435 95-630 81-563 (607)
6 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 542.3 33.3 422 101-616 3-462 (538)
7 3j16_B RLI1P; ribosome recycli 1.0 1 1 523.0 36.3 459 96-630 68-559 (608)
8 3ux8_A Excinuclease ABC, A sub 1.0 1 1 510.0 35.8 430 109-629 30-639 (670)
9 2vf7_A UVRA2, excinuclease ABC 1.0 1 1 399.4 29.5 337 233-630 354-827 (842)
10 3pih_A Uvrabc system protein A 1.0 1 1 391.9 35.3 334 239-630 444-902 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=654.78 Aligned_cols=492 Identities=23% Similarity=0.363 Sum_probs=348.3
Q ss_pred CCCCEEEEEEEEEECC---EECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC---------
Q ss_conf 8885799938999699---0003512499977969999968984189999999779999961799877875---------
Q 005532 94 ISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------- 161 (692)
Q Consensus 94 ~~~~i~i~nvs~~y~~---~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~--------- 161 (692)
..+.|+++|++|+|++ .++|+|+||+|++|+.++||||+|||||||+++|.|+++|++|+|.++|.++
T Consensus 412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHH
T ss_conf 88767999855407999987433331886228827899805898577888875456516448615799650112599985
Q ss_pred -EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf -6999825675687998999999632899999999999999884200105788877999999999986169000999999
Q 005532 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (692)
Q Consensus 162 -~i~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (692)
.|+||+|+||+ ++.||+|||..+..+. ..+++.++++.+. +...+.
T Consensus 492 ~~i~~v~Q~~~L-f~~TI~eNI~~g~~~~-----~~~~v~~a~~~a~---------------------------l~~~i~ 538 (1321)
T 4f4c_A 492 KNVAVVSQEPAL-FNCTIEENISLGKEGI-----TREEMVAACKMAN---------------------------AEKFIK 538 (1321)
T ss_dssp HHEEEECSSCCC-CSEEHHHHHHTTCTTC-----CHHHHHHHHHHTT---------------------------CHHHHH
T ss_pred HCCCCCCCCCEE-ECCCHHHHHHHHCCCC-----HHHHHHHHHHHCC---------------------------CHHHHH
T ss_conf 046665875332-0786167886415522-----0999999998756---------------------------546887
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCC--CCCEEEEEECCHHH
Q ss_conf 7703419993111454566895799999999998139995997178999999889999998724--99839999439888
Q 005532 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (692)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~~~tvIivsHd~~~ 318 (692)
.+ + -|+.+..+++ ..+||||||||++||||++++|+|||||||||+||++++..+.+.|.+ .++|+|+|||++..
T Consensus 539 ~l-p-~G~~T~vGe~-G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 539 TL-P-NGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp HS-T-TTTSSEESSS-SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred CC-C-CCCCCEECCC-CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 08-8-8886075589-8877777879999999872599989984554468878999999999998479889997363878
Q ss_pred HHHHCCEEEEEECCEEEEECCCHHH----------HHHHHHH--HHHH--------------H----------H------
Q ss_conf 9844485899723337782168589----------9999999--9999--------------9----------9------
Q 005532 319 LDQLCTKIVETEMGVSRTYEGNYSQ----------YVLEKAA--WIES--------------Q----------Y------ 356 (692)
Q Consensus 319 l~~~~~~i~~l~~G~~~~~~g~y~~----------~~~~~~~--~~~~--------------~----------~------ 356 (692)
+.. ||+|+++++|++.. .|++.+ ....... .... . .
T Consensus 616 i~~-aD~Iivl~~G~ive-~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1321)
T 4f4c_A 616 IRN-ADLIISCKNGQVVE-VGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDI 693 (1321)
T ss_dssp TTT-CSEEEEEETTEEEE-EECHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC----------------------------
T ss_pred HHH-CCEEEEEECCEEEC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 986-89899963996513-6899999985327999999622122223323344332232111222223422222221102
Q ss_pred ------------------------------HHH-----------------------------------------------
Q ss_conf ------------------------------999-----------------------------------------------
Q 005532 357 ------------------------------AAW----------------------------------------------- 359 (692)
Q Consensus 357 ------------------------------~~~----------------------------------------------- 359 (692)
..+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 773 (1321)
T 4f4c_A 694 MNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSV 773 (1321)
T ss_dssp ----------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21110132124567740257775315403899999999707863109999999877899999999999999999999999
Q ss_pred -H--------------------H-------------------------HHHHHHH-----------------------HH
Q ss_conf -9--------------------9-------------------------9999999-----------------------99
Q 005532 360 -E--------------------K-------------------------QQREIEQ-----------------------TK 370 (692)
Q Consensus 360 -~--------------------~-------------------------~~~~~~~-----------------------~~ 370 (692)
. | ......+ ..
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G 853 (1321)
T 4f4c_A 774 FFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASG 853 (1321)
T ss_dssp HHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHH
T ss_conf 99999987517934556678999999999999999999999999999999999999999988873499333216788848
Q ss_pred HHHHHHCCCC------------------------------------------------------------C----C--HH
Q ss_conf 9999851597------------------------------------------------------------6----1--11
Q 005532 371 DLINRLGAGA------------------------------------------------------------N----S--GR 384 (692)
Q Consensus 371 ~~i~~l~~~~------------------------------------------------------------~----~--~~ 384 (692)
+.+.++..+. . . ..
T Consensus 854 ~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1321)
T 4f4c_A 854 KISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFAD 933 (1321)
T ss_dssp HHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88850250599999999999999999865377770221378689999999988899999999999999999999999888
Q ss_pred ----------------H---------------------------------------------------------------
Q ss_conf ----------------3---------------------------------------------------------------
Q 005532 385 ----------------A--------------------------------------------------------------- 385 (692)
Q Consensus 385 ----------------~--------------------------------------------------------------- 385 (692)
+
T Consensus 934 ~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~ 1013 (1321)
T 4f4c_A 934 SGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQ 1013 (1321)
T ss_dssp HHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98899999962798886141488999999999999999999999999999999999999999999875788753765421
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEECCCE
Q ss_conf ----------------------------5899999999887511152212360563278888887528999579991992
Q 005532 386 ----------------------------SSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR 437 (692)
Q Consensus 386 ----------------------------~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~ 437 (692)
.......+|+.+.-. .+++.. ....+...|+..+-|+++||+|+|+++
T Consensus 1014 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~-~~~~~~---~~~~~~~~~~~~g~I~f~nVsf~Y~~~ 1089 (1321)
T 4f4c_A 1014 PMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLR-KISKID---SLSLAGEKKKLYGKVIFKNVRFAYPER 1089 (1321)
T ss_dssp HHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHH-CCCSSC---TTCCCSBCCCCCCCEEEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCC---CCCCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 4789999999987788999999999999999999998999860-766577---766778788888818999879857999
Q ss_pred ---ECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE----------EEEECCCCHHHCCCC
Q ss_conf ---0100102899479789999289994899999991698997138998775320----------002213201106988
Q 005532 438 ---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFEQNQAEALDLD 504 (692)
Q Consensus 438 ---~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~----------~~~~~q~~~~~l~~~ 504 (692)
++|+++||+|++|+++||||+||||||||+++|.|+++|++|+|.+||.++. .++++|++ . .++
T Consensus 1090 ~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp--~-LF~ 1166 (1321)
T 4f4c_A 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEP--T-LFD 1166 (1321)
T ss_dssp CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSC--C-CCS
T ss_pred CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCC--E-EEC
T ss_conf 9882124516998898999998999981999999995686389978999999865499999985459987899--7-327
Q ss_pred CCHHHHHHHHH--CCCCHHHHHHHHHHCCCCC------CCCC----CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 44999999971--1044999999984469993------2001----3679899789999999998636996799847889
Q 005532 505 KTVLETVAEAA--EDWRIDDIKGLLGRCNFKA------DMLD----RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (692)
Q Consensus 505 ~t~~~~~~~~~--~~~~~~~~~~~L~~~~l~~------~~~~----~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn 572 (692)
.|+.+|+.... .....++++..+...++.. ...+ ....+||||||||+|||||++++|+||||||||+
T Consensus 1167 gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTS 1246 (1321)
T 4f4c_A 1167 CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 1246 (1321)
T ss_dssp EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred CCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 23999974549999999999999999829849997176789998238891569999999999999971799899968111
Q ss_pred CCCHHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHHHH
Q ss_conf 99988799999999742-9-569999169888984366899997997977069926899984
Q 005532 573 HLDIPSKEMLEEAISEY-K-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632 (692)
Q Consensus 573 ~LD~~s~~~l~~~L~~~-~-~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~~~ 632 (692)
+||.++...+++.|++. . .|+|+|+|++.++.+ ||+|++|++|++.+ .|++++.++.+
T Consensus 1247 aLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE-~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1247 ALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE-KGTHTQLMSEK 1306 (1321)
T ss_dssp STTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEE-EECHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH-CCEEEEEECCEEEE-ECCHHHHHHCC
T ss_conf 57899999999999997399989996068999996-99999998989999-88889998498
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=613.98 Aligned_cols=491 Identities=23% Similarity=0.372 Sum_probs=335.6
Q ss_pred CCCEEEEEEEEEECC---EECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC----------
Q ss_conf 885799938999699---0003512499977969999968984189999999779999961799877875----------
Q 005532 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (692)
Q Consensus 95 ~~~i~i~nvs~~y~~---~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~---------- 161 (692)
.+.|+++|++|+|++ .++|+|+||+|++|++++||||||||||||+++|+|+++|++|+|.++|.++
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHH
T ss_conf 77189999899769999871012545897599889998999997999999980788999738999999877579999986
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 69998256756879989999996328999999999999998842001057888779999999999861690009999997
Q 005532 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (692)
Q Consensus 162 ~i~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (692)
.|+||+|+|++ ++.||+||+..+..+. ..+.+.++++.+ .+...+..
T Consensus 465 ~i~~v~Q~~~l-~~~ti~eNi~~g~~~~-----~~~~~~~~~~~~---------------------------~~~~~i~~ 511 (1284)
T 3g5u_A 465 IIGVVSQEPVL-FATTIAENIRYGREDV-----TMDEIEKAVKEA---------------------------NAYDFIMK 511 (1284)
T ss_dssp HEEEECSSCCC-CSSCHHHHHHHHCSSC-----CHHHHHHHHHHT---------------------------TCHHHHHH
T ss_pred HEEEECCCCCC-CCCCHHHHHHCCCCCC-----CHHHHHHHHHHH---------------------------CCHHHHHH
T ss_conf 54898688753-7766999974579899-----999999999982---------------------------96999974
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCC--CCCEEEEEECCHHHH
Q ss_conf 703419993111454566895799999999998139995997178999999889999998724--998399994398889
Q 005532 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (692)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~~~tvIivsHd~~~l 319 (692)
+-. |+.+.. ...+.+|||||||||+|||||+.+|+||||||||++||+++.+++.+.++. .++|+|+|||++..+
T Consensus 512 l~~--g~~t~~-~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 512 LPH--QFDTLV-GERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp STT--GGGCCC-SSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHH
T ss_pred CCC--CCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 656--334501-47878659999999999999952999899979877779999999999999973999899994077899
Q ss_pred HHHCCEEEEEECCEEEEECCCHHHHHHHHHHH---HHHH-----------------------------------------
Q ss_conf 84448589972333778216858999999999---9999-----------------------------------------
Q 005532 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW---IESQ----------------------------------------- 355 (692)
Q Consensus 320 ~~~~~~i~~l~~G~~~~~~g~y~~~~~~~~~~---~~~~----------------------------------------- 355 (692)
.. ||+|+++++|++. ..|++.+........ ...+
T Consensus 589 ~~-~d~i~vl~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1284)
T 3g5u_A 589 RN-ADVIAGFDGGVIV-EQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRK 666 (1284)
T ss_dssp TT-CSEEEECSSSCCC-CEECHHHHHHTTSHHHHHHHHTC----------------------------------------
T ss_pred HC-CCEEEEEECCEEE-EECCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 74-9989999899999-978899998678779999997430022111333333222223443333333320003454333
Q ss_pred -----------------------------------------------------------------HHHH-----------
Q ss_conf -----------------------------------------------------------------9999-----------
Q 005532 356 -----------------------------------------------------------------YAAW----------- 359 (692)
Q Consensus 356 -----------------------------------------------------------------~~~~----------- 359 (692)
...+
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 746 (1284)
T 3g5u_A 667 SICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQ 746 (1284)
T ss_dssp -----------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 44564223321102455531366258999999845157999999999999999999999999999999855685033677
Q ss_pred -------------------------H--HH-HHHHHHHH-HHHHHH--------CC-CCCCHHHH---------------
Q ss_conf -------------------------9--99-99999999-999985--------15-97611135---------------
Q 005532 360 -------------------------E--KQ-QREIEQTK-DLINRL--------GA-GANSGRAS--------------- 386 (692)
Q Consensus 360 -------------------------~--~~-~~~~~~~~-~~i~~l--------~~-~~~~~~~~--------------- 386 (692)
. .. .....+.+ ...+++ .. ...+|...
T Consensus 747 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~ 826 (1284)
T 3g5u_A 747 NSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATG 826 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999998399888757899889999999999999999999
Q ss_pred ------------------------------------------------------H-------------------------
Q ss_conf ------------------------------------------------------8-------------------------
Q 005532 387 ------------------------------------------------------S------------------------- 387 (692)
Q Consensus 387 ------------------------------------------------------~------------------------- 387 (692)
.
T Consensus 827 ~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~ 906 (1284)
T 3g5u_A 827 SRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSL 906 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999699999999999999999999999999999999999999999999999889999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 005532 388 -------------------------------------------------------------------------------- 387 (692)
Q Consensus 388 -------------------------------------------------------------------------------- 387 (692)
T Consensus 907 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 986 (1284)
T 3g5u_A 907 TREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQ 986 (1284)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 65999999999999999999999999999999999999999999999999999990980699999999999999999999
Q ss_pred ----------HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEECCCE---ECCCCEEEEEECCCEEE
Q ss_conf ----------99999999887511152212360563278888887528999579991992---01001028994797899
Q 005532 388 ----------AEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTA 454 (692)
Q Consensus 388 ----------~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~---~ll~~isl~i~~Ge~v~ 454 (692)
+....+|+.+.-. .++...... ..+...++..+.|+++||++.|+++ ++|+++||+|++||++|
T Consensus 987 ~~~~~~~~~~~~~a~~ri~~~l~-~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ 1063 (1284)
T 3g5u_A 987 VSSFAPDYAKATVSASHIIRIIE-KTPEIDSYS--TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLA 1063 (1284)
T ss_dssp HTSSSCCSTHHHHHHHHHHHHHH-SCCSSSSCC--SSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCC--CCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEE
T ss_conf 99999999999999999999983-887666655--566545677785799998997799998700203059976998899
Q ss_pred EECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE----------EEEECCCCHHHCCCCCCHHHHHHHHHC--CCCHHH
Q ss_conf 99289994899999991698997138998775320----------002213201106988449999999711--044999
Q 005532 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVAEAAE--DWRIDD 522 (692)
Q Consensus 455 ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~----------~~~~~q~~~~~l~~~~t~~~~~~~~~~--~~~~~~ 522 (692)
|+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|++ . .++.|+.+|+..... ....++
T Consensus 1064 ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--~-l~~~ti~eNi~~~~~~~~~~~~~ 1140 (1284)
T 3g5u_A 1064 LVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP--I-LFDCSIAENIAYGDNSRVVSYEE 1140 (1284)
T ss_dssp EECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSC--C-CCSSBHHHHHTCCCSSCCCCHHH
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCC--C-CCCCCHHHHHHCCCCCCCCCHHH
T ss_conf 98899997899999994686789977989999800078999970268987787--4-06666999974668778999999
Q ss_pred HHHHHHHCCCCC----------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 999984469993----------20013679899789999999998636996799847889999887999999997429--
Q 005532 523 IKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK-- 590 (692)
Q Consensus 523 ~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~-- 590 (692)
+...+...++.. ........+||||||||++|||+++++|+||||||||++||.++...+++.|++..
T Consensus 1141 i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~ 1220 (1284)
T 3g5u_A 1141 IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220 (1284)
T ss_dssp HHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999983959999727042456117888933899999999999997499999986875557999999999999986799
Q ss_pred CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHHH
Q ss_conf 56999916988898436689999799797706992689998
Q 005532 591 GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631 (692)
Q Consensus 591 ~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~~ 631 (692)
.|+|+||||++++.. ||+|++|++|++.. .|+++++++.
T Consensus 1221 ~tvi~isH~l~~i~~-~dri~vl~~G~i~~-~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1221 RTCIVIAHRLSTIQN-ADLIVVIQNGKVKE-HGTHQQLLAQ 1259 (1284)
T ss_dssp SCEEEECSCTTGGGS-CSEEEEEETBEEEE-EECHHHHHHS
T ss_pred CEEEEEECCHHHHHC-CCEEEEEECCEEEE-ECCHHHHHHC
T ss_conf 989999558799980-99899998998999-7789999847
No 3
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=612.60 Aligned_cols=430 Identities=29% Similarity=0.501 Sum_probs=332.6
Q ss_pred CCEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCCCEEEEECCCC-CCC
Q ss_conf 85799938999699000351249997796999996898418999999977-9999961799877875699982567-568
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSNMKIAFLSQEF-EVS 173 (692)
Q Consensus 96 ~~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G-~~~p~~G~v~~~~~~~~i~yv~Q~~-~~~ 173 (692)
..|...|++++|+++.+|+++||+|++|++++|+||||||||||+++|+| .+ .|.- .. ...+++|++|++ ...
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~~-~~-~~~~~~~v~q~~~~~~ 508 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGFP-TQ-EECRTVYVEHDIDGTH 508 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTCC-CT-TTSCEEETTCCCCCCC
T ss_pred CEEEEEEEEEEECCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCC-CC-CCEEEEEECCCCCCCC
T ss_conf 52489538999899876741269981897899999999879999999948986---7976-63-5416999735643245
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 79989999996328999999999999998842001057888779999999999861690009999997703419993111
Q 005532 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (692)
Q Consensus 174 ~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~ 253 (692)
...|+.+++.... .. . ..++.+++..+|+.....
T Consensus 509 ~~ltv~e~l~~~~-------------------------------------------~~--~-~~~v~~~L~~lgL~~~~~ 542 (986)
T 2iw3_A 509 SDTSVLDFVFESG-------------------------------------------VG--T-KEAIKDKLIEFGFTDEMI 542 (986)
T ss_dssp TTSBHHHHHHTTC-------------------------------------------SS--C-HHHHHHHHHHTTCCHHHH
T ss_pred CCCCHHHHHHHHH-------------------------------------------CC--H-HHHHHHHHHHCCCCHHHH
T ss_conf 5780999999861-------------------------------------------27--9-999999999869984464
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCEEEEEECCE
Q ss_conf 45456689579999999999813999599717899999988999999872499839999439888984448589972333
Q 005532 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (692)
Q Consensus 254 ~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~~~i~~l~~G~ 333 (692)
++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++.++|+|+||||++++..+||+++++++|+
T Consensus 543 ~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp HSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 39802079999999999999964999999979766799999999999998679989999798899998689999997994
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 77821685899999999999999999999999999999999851597611135899999999887511152212360563
Q 005532 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (692)
Q Consensus 334 ~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~ 413 (692)
+..|.|++..+...... ...... ... ....+.
T Consensus 623 iv~~~G~~~e~~~~~~~----------------------~~~~~~----------------------l~~----~~~~~~ 654 (986)
T 2iw3_A 623 LRKYKGNFTEFVKKCPA----------------------AKAYEE----------------------LSN----TDLEFK 654 (986)
T ss_dssp EEEEESCHHHHHHHCGG----------------------GGGSSS----------------------TTT----CCCCCC
T ss_pred EECCCCCHHHHHHHHHH----------------------HHHHHH----------------------HHH----HHHHCC
T ss_conf 42677999999861488----------------------999986----------------------445----443203
Q ss_pred CCCC------CCCCCCEEEEEEEEEECCC--EECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 2788------8888752899957999199--2010010289947978999928999489999999169899713899877
Q 005532 414 FPER------GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (692)
Q Consensus 414 ~p~~------~~~~~~~i~~~~v~~~y~~--~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~ 485 (692)
+|++ ...++.+|+++|+++.|++ +++|+++||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+++
T Consensus 655 ~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 655 FPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp CCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 56555433456678706999846998189874134322799828978999899998799999999579888860899868
Q ss_pred CCCEEEEECCCCHHHC--CCCCCHHHHHHHH-------------------------------------------------
Q ss_conf 5320002213201106--9884499999997-------------------------------------------------
Q 005532 486 HNVLPNYFEQNQAEAL--DLDKTVLETVAEA------------------------------------------------- 514 (692)
Q Consensus 486 ~~~~~~~~~q~~~~~l--~~~~t~~~~~~~~------------------------------------------------- 514 (692)
+...+|+.|+....+ ..+.++.+++...
T Consensus 735 -~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~ 813 (986)
T 2iw3_A 735 -NCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKN 813 (986)
T ss_dssp -TCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETT
T ss_pred -CCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf -6425763130243321001147999988775045025555433210343555442000112320123444455543122
Q ss_pred -------------------------------------------------------H---CCCCHHHHHHHHHHCCCCCCC
Q ss_conf -------------------------------------------------------1---104499999998446999320
Q 005532 515 -------------------------------------------------------A---EDWRIDDIKGLLGRCNFKADM 536 (692)
Q Consensus 515 -------------------------------------------------------~---~~~~~~~~~~~L~~~~l~~~~ 536 (692)
. .......+...|..+|+....
T Consensus 814 ~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~ 893 (986)
T 2iw3_A 814 TYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI 893 (986)
T ss_dssp EEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 20021000255432000001234323443210167776667665544324555430223234799999999976998054
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
Q ss_conf -0136798997899999999986369967998478899998879999999974295699991698889843668999979
Q 005532 537 -LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615 (692)
Q Consensus 537 -~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~~tvI~VSHd~~~i~~~~d~i~~l~~ 615 (692)
.++++.+||||||||++|||+|+.+|+|||||||||+||..+...+.+.|+++++|||+||||.+++..+||++|+|++
T Consensus 894 ~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~ 973 (986)
T 2iw3_A 894 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKD 973 (986)
T ss_dssp HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBT
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 44898042399999999999999839999999798657799999999999997499799997989999985899999989
Q ss_pred CEEEEECCCH
Q ss_conf 9797706992
Q 005532 616 SNLQDYAGDY 625 (692)
Q Consensus 616 g~i~~~~g~y 625 (692)
|++...+.+|
T Consensus 974 G~Iv~~G~~~ 983 (986)
T 2iw3_A 974 GRMTPSGHNW 983 (986)
T ss_dssp TBCCC-----
T ss_pred CEEEEECCCC
T ss_conf 9999868753
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=575.07 Aligned_cols=432 Identities=24% Similarity=0.319 Sum_probs=323.6
Q ss_pred EEE-EEEEEEECCE-ECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE---------EECCC-------
Q ss_conf 799-9389996990-00351249997796999996898418999999977999996179---------98778-------
Q 005532 98 VKL-ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKS------- 159 (692)
Q Consensus 98 i~i-~nvs~~y~~~-~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v---------~~~~~------- 159 (692)
.++ +|++++|++. .+++++| +|++|++++|+||||||||||+++|+|+++|++|++ .+.|.
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred HHHHCCCEEEECCCCCCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf 6685590799799650026768-679999999999999979999999967998888866753145677618840777787
Q ss_pred -----CCEEEEECCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -----756999825675687---998999999632899999999999999884200105788877999999999986169
Q 005532 160 -----NMKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (692)
Q Consensus 160 -----~~~i~yv~Q~~~~~~---~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (692)
...+++++|.+...+ ..|+.+++.. .
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~------------------------------------------~---- 133 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK------------------------------------------A---- 133 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH------------------------------------------H----
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHH------------------------------------------H----
T ss_conf 888874446653223432101211219999743------------------------------------------1----
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC---CCCCE
Q ss_conf 000999999770341999311145456689579999999999813999599717899999988999999872---49983
Q 005532 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVP 308 (692)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~~~t 308 (692)
....++.+++..+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.++|
T Consensus 134 --~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~t 210 (538)
T 1yqt_A 134 --DETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKS 210 (538)
T ss_dssp --CSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred --HHHHHHHHHHHHCCCC-HHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE
T ss_conf --3999999999876997-3660983548999999999999984699999998973457988999999999999965987
Q ss_pred EEEEECCHHHHHHHCCEEEEEECCEE--EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99994398889844485899723337--7821685899999999999999999999999999999999851597611135
Q 005532 309 MVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (692)
Q Consensus 309 vIivsHd~~~l~~~~~~i~~l~~G~~--~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 386 (692)
||+||||++++..+||+|+++.++.. ..+...+..... ....+..... ..
T Consensus 211 vi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~---~~--- 262 (538)
T 1yqt_A 211 VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNG----------------------INEFLRGYLK---DE--- 262 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH----------------------HHHHHHTEET---TT---
T ss_pred EEEEECCHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHH----------------------HHHHHHHCCC---HH---
T ss_conf 9999478899997688999986863244022553558999----------------------9987640230---02---
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC--CCCCCEEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHH
Q ss_conf 89999999988751115221236056327888--8887528999579991992010010289947978999928999489
Q 005532 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (692)
Q Consensus 387 ~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKS 464 (692)
..... .....+.++... ..+..+++++++++.|++ ..|+.++|+|++|+++||+|+||||||
T Consensus 263 -------------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKS 326 (538)
T 1yqt_A 263 -------------NVRFR--PYEIKFTKTGERVEIERETLVTYPRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKT 326 (538)
T ss_dssp -------------TEECS--SSCCCCCCSSGGGSSCCCEEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHH
T ss_pred -------------HHCCC--CCCCCCCCCCCCCCCCCCEEEEEEEEEEEECC-EEEEECCCCCCCCCEEEEECCCCCCHH
T ss_conf -------------32034--44555455776556678718999307999899-899907441289989999889999999
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHH-HCC-CCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999916989971389987753200022132011069884499999997-110-4499999998446999320013679
Q 005532 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKADMLDRKVS 542 (692)
Q Consensus 465 TLl~lL~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~t~~~~~~~~-~~~-~~~~~~~~~L~~~~l~~~~~~~~~~ 542 (692)
||+++|+|+++|++|+|.+. ...+|++|+.. ..+..++.+++... ... .....+..++..+++. ...++++.
T Consensus 327 TLlk~l~Gl~~p~~G~i~~~---~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~ 400 (538)
T 1yqt_A 327 TFVKMLAGVEEPTEGKIEWD---LTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVN 400 (538)
T ss_dssp HHHHHHHTSSCCSBCCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGG
T ss_pred HHHHHHHCCCCCCCEEEEEC---CEEEEEECCCC--CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCH-HHHCCCHH
T ss_conf 99999967998997189987---46999826776--78888599999864036887899999999974991-56539944
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCCEEEEEEC--C
Q ss_conf 89978999999999863699679984788999988799999999742----95699991698889843668999979--9
Q 005532 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG--S 616 (692)
Q Consensus 543 ~LSgGqkqrl~LArall~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d~i~~l~~--g 616 (692)
+||||||||++|||+|+.+|+|||||||||+||..+...+.+.|+++ ++|||+||||++++..+||+|++|++ |
T Consensus 401 ~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~ 480 (538)
T 1yqt_A 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPG 480 (538)
T ss_dssp GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCCC
T ss_conf 48999999999999997289989993980108999999999999999986798999993989999996899999908831
Q ss_pred EEEEECCCHHHHHH
Q ss_conf 79770699268999
Q 005532 617 NLQDYAGDYNYYLE 630 (692)
Q Consensus 617 ~i~~~~g~y~~y~~ 630 (692)
.+. ..|...+...
T Consensus 481 ~~~-~~g~~~~~~~ 493 (538)
T 1yqt_A 481 KYG-RALPPMGMRE 493 (538)
T ss_dssp TEE-EECCCEEHHH
T ss_pred EEE-ECCCHHHHHH
T ss_conf 574-0489899974
No 5
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=573.82 Aligned_cols=435 Identities=24% Similarity=0.323 Sum_probs=325.4
Q ss_pred CCCEEE--------EEEEEEECCE-ECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE---------EE
Q ss_conf 885799--------9389996990-00351249997796999996898418999999977999996179---------98
Q 005532 95 SSGVKL--------ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IK 156 (692)
Q Consensus 95 ~~~i~i--------~nvs~~y~~~-~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v---------~~ 156 (692)
..+|++ +|++++|++. .+|+++| +|++|++++|+||||||||||+++|+|+++|++|++ .+
T Consensus 81 ~~~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 81 FNAISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp SCCCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred CCEEEEECCCCCCCCCEEEEECCCCEEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHEE
T ss_conf 20289965773136785999899784048989-88989999999999972999999985799878785466630133136
Q ss_pred CCC------------CCEEEEECCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 778------------756999825675687---99899999963289999999999999988420010578887799999
Q 005532 157 AKS------------NMKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221 (692)
Q Consensus 157 ~~~------------~~~i~yv~Q~~~~~~---~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (692)
.|. ...+++++|.....+ ..|+.+++...
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------------------------------------ 203 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------------------------------------ 203 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------------------------------------
T ss_pred CCEEHHHHHHHHHHHHCCEEEEECHHHHCHHHCCCCHHHHHHHH------------------------------------
T ss_conf 87761343234556534468863204313022005099996316------------------------------------
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 99999861690009999997703419993111454566895799999999998139995997178999999889999998
Q 005532 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY 301 (692)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~ 301 (692)
....++.+++..+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++
T Consensus 204 ------------~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~ 270 (607)
T 3bk7_A 204 ------------DEVGKFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV 270 (607)
T ss_dssp ------------CCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHCCCC-CHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf ------------7999999999975997-043798056999999999999998459999999797435899999999999
Q ss_pred HCC---CCCEEEEEECCHHHHHHHCCEEEEEECCEE--EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 724---998399994398889844485899723337--782168589999999999999999999999999999999985
Q 005532 302 LGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRL 376 (692)
Q Consensus 302 L~~---~~~tvIivsHd~~~l~~~~~~i~~l~~G~~--~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 376 (692)
|++ .+.|||+||||++++..+||+|+++.++.. ..+...+... . . ....+...
T Consensus 271 L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~----~-~-----------------i~~~~~~~ 328 (607)
T 3bk7_A 271 IRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTR----N-G-----------------INEFLQGY 328 (607)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHH----H-H-----------------HHHHHHTE
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHCCEEEEECCCCCCCCEECCCHHHH----H-H-----------------HHHHHHHC
T ss_conf 999986699899996485898865899999779864452122413279----9-9-----------------99997510
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC--CCCCCCCEEEEEEEEEECCCEECCCCEEEEEECCCEEE
Q ss_conf 1597611135899999999887511152212360563278--88888752899957999199201001028994797899
Q 005532 377 GAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE--RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454 (692)
Q Consensus 377 ~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ 454 (692)
..... ... ......+.++. ....+..+++++++++.|++ ..|+.++|+|.+|+++|
T Consensus 329 ~~~~~-------------------~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~l~~~~~~v~~Gei~~ 386 (607)
T 3bk7_A 329 LKDEN-------------------VRF--RPYEIRFTKLSERVDVERETLVEYPRLVKDYGS-FKLEVEPGEIRKGEVIG 386 (607)
T ss_dssp ETTTT-------------------EEC--CSSCCCCCCSTTSCCCCCCEEEEECCEEEECSS-CEEEECCEEEETTCEEE
T ss_pred CHHHH-------------------HHC--CCCCCCCCCCCCCCCCCCCEEEEEECEEEEECC-EEEEECCCCCCCCCEEE
T ss_conf 13455-------------------430--121234565777544467528999130987443-48993515327998999
Q ss_pred EECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHH-HCCC-CHHHHHHHHHHCCC
Q ss_conf 992899948999999916989971389987753200022132011069884499999997-1104-49999999844699
Q 005532 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AEDW-RIDDIKGLLGRCNF 532 (692)
Q Consensus 455 ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~t~~~~~~~~-~~~~-~~~~~~~~L~~~~l 532 (692)
|+|+||||||||+++|+|+++|++|+|.+. ...+|++|+.. ..+..++.+++... ...+ ....+..++..+++
T Consensus 387 i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 387 IVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCEEEEEE---EEEEEEECCCC--CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 999999899999999966988886289990---27999805766--7789849999975312587789999999987699
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCC
Q ss_conf 932001367989978999999999863699679984788999988799999999742----9569999169888984366
Q 005532 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVN 608 (692)
Q Consensus 533 ~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d 608 (692)
. ...++++.+||||||||++|||+|+.+|+||||||||++||..++..+.+.|+++ +.|+|+||||++++..+||
T Consensus 462 ~-~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ad 540 (607)
T 3bk7_A 462 I-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 540 (607)
T ss_dssp T-TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred C-HHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCC
T ss_conf 3-375499223799999999999999748998999687447899999999999999997479899999098999998699
Q ss_pred EEEEEEC--CEEEEECCCHHHHHH
Q ss_conf 8999979--979770699268999
Q 005532 609 RVVEVKG--SNLQDYAGDYNYYLE 630 (692)
Q Consensus 609 ~i~~l~~--g~i~~~~g~y~~y~~ 630 (692)
++++|++ |.+. ..|...+.+.
T Consensus 541 rv~vl~~~~g~~~-~~g~p~~~~~ 563 (607)
T 3bk7_A 541 RLIVFEGEPGRHG-RALPPMGMRE 563 (607)
T ss_dssp EEEEEEEETTTEE-EECCCEEHHH
T ss_pred EEEEECCCCCEEE-ECCCHHHHHH
T ss_conf 9999959830697-4289899975
No 6
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=542.34 Aligned_cols=422 Identities=23% Similarity=0.311 Sum_probs=302.8
Q ss_pred EEEEEEECCEECEEEEEEEE-ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-----------ECCCC--------
Q ss_conf 93899969900035124999-77969999968984189999999779999961799-----------87787--------
Q 005532 101 ENISKSYKGVTVLKDVTWEV-KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSN-------- 160 (692)
Q Consensus 101 ~nvs~~y~~~~iL~~isl~i-~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~-----------~~~~~-------- 160 (692)
++.+.+|+... |+-..|.+ ++|++++|+||||||||||+++|+|+++|++|+|. +.+..
T Consensus 3 ~~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 3 GEVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CCEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCCCEECCCCC-EEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEHHHHHHHH
T ss_conf 88720347883-36548897999989999999988099999999669988778545655346677650775388878887
Q ss_pred ----CEEEEECCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ----5699982567568---799899999963289999999999999988420010578887799999999998616900
Q 005532 161 ----MKIAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (692)
Q Consensus 161 ----~~i~yv~Q~~~~~---~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (692)
..+....|..... ...++.+++.. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-----------------------------------------~------- 113 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTK-----------------------------------------I------- 113 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHH-----------------------------------------H-------
T ss_pred HHCCCCHHHCCCHHHHHHHHCCCCHHHHHHC-----------------------------------------C-------
T ss_conf 5113103111106665566535729998633-----------------------------------------0-------
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCC--CCCEEEE
Q ss_conf 09999997703419993111454566895799999999998139995997178999999889999998724--9983999
Q 005532 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (692)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~~~tvIi 311 (692)
....++.+++..+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .++|||+
T Consensus 114 ~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~ 192 (538)
T 3ozx_A 114 DERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192 (538)
T ss_dssp CCSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHHHCCCC-HHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 1689999999874994-244499113999999999999999729999999898666899999999999999858998999
Q ss_pred EECCHHHHHHHCCEEEEEECCEE--EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 94398889844485899723337--7821685899999999999999999999999999999999851597611135899
Q 005532 312 ISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAE 389 (692)
Q Consensus 312 vsHd~~~l~~~~~~i~~l~~G~~--~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 389 (692)
||||++++..+||+|+++.+|.. ..+...+..- . . ....+......... +
T Consensus 193 vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~~----~-~-----------------~~~~~~g~~~~~~~-~----- 244 (538)
T 3ozx_A 193 VDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR----V-G-----------------INNFLKGYLPAENM-K----- 244 (538)
T ss_dssp ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH----H-H-----------------HHHHHHTEETTTTE-E-----
T ss_pred EEECHHHHHHHCCEEEEECCCCCCCCCCCHHHHHH----H-H-----------------HHHHHHHHCHHHHH-H-----
T ss_conf 98572788966999999469865455300345578----7-8-----------------99998632512221-0-----
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHH
Q ss_conf 99999988751115221236056327888888752899957999199201001028994797899992899948999999
Q 005532 390 KKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469 (692)
Q Consensus 390 ~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~l 469 (692)
.+ ......... ..........+..+++++++++.|++ ..|..+|++|++|+++||+|+||||||||+++
T Consensus 245 -----~r---~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~ 313 (538)
T 3ozx_A 245 -----IR---PDEIKFMLK--EVSDLDLSKDLKTKMKWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARI 313 (538)
T ss_dssp -----CS---SSCCCCSCC------------CCEEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHH
T ss_pred -----CC---CHHHHCCCC--CCCCCCCCCCCCCEEEECCEEEEECC-EEEEECCCEECCCCEEEEECCCCCCHHHHHHH
T ss_conf -----24---233310125--62100123454506998233999798-89982664688998999999999989999999
Q ss_pred HHCCCCCCEEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHCCC---CHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 9169899713899877532000221320110698844999999971104---4999999984469993200136798997
Q 005532 470 IMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW---RIDDIKGLLGRCNFKADMLDRKVSLLSG 546 (692)
Q Consensus 470 L~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~t~~~~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSg 546 (692)
|+|+++|++|+|.+++.. .+|++|.... ....++.+++......+ ....+..++..+++. ...++++.+|||
T Consensus 314 l~Gl~~p~~G~i~~~~~~--i~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSG 388 (538)
T 3ozx_A 314 LVGEITADEGSVTPEKQI--LSYKPQRIFP--NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSG 388 (538)
T ss_dssp HTTSSCCSBCCEESSCCC--EEEECSSCCC--CCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGCCH
T ss_pred HHCCCCCCCCEEEECCEE--EEEECHHCCC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH-HHHCCCHHHCCH
T ss_conf 957888998189999845--6761400034--54777999998755311211699999999875997-786289322799
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCCEEEEEECC
Q ss_conf 8999999999863699679984788999988799999999742----956999916988898436689999799
Q 005532 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGS 616 (692)
Q Consensus 547 Gqkqrl~LArall~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d~i~~l~~g 616 (692)
|||||++|||+|+.+|+||||||||++||..+...+.+.|+++ +.|||+||||++++..+||+|++|+++
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECC
T ss_conf 99999999999970899899969865799999999999999999738989999958899999968999999698
No 7
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=522.96 Aligned_cols=459 Identities=21% Similarity=0.327 Sum_probs=304.4
Q ss_pred CCEEEEE--------EEEEECCEE-CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC-EEEE
Q ss_conf 8579993--------899969900-03512499977969999968984189999999779999961799877875-6999
Q 005532 96 SGVKLEN--------ISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAF 165 (692)
Q Consensus 96 ~~i~i~n--------vs~~y~~~~-iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~-~i~y 165 (692)
.+|++.| ++++|+... .+++++ .+++|++++|+|||||||||||++|+|+++|++|+|....... .+++
T Consensus 68 ~~i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~ 146 (608)
T 3j16_B 68 DAIQIINLPTNLEAHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY 146 (608)
T ss_dssp CCEEEEEESSSSSTTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHH
T ss_pred CCEEEECCCHHHCCCEEEEECCCCEEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHE
T ss_conf 2257842775655780899889866645789-889999999999999829999999856998888668246314545440
Q ss_pred ECCCCCCCCCCCHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 82567568799899999963-2899999---9999999998842001057888779999999999861690009999997
Q 005532 166 LSQEFEVSMSRTVREEFMSA-FKEEMEI---AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (692)
.......++... ....... ....+....... .....+..++. . ........+.+
T Consensus 147 --------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~l~-------~----~~~~~~~~~~~ 204 (608)
T 3j16_B 147 --------FRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIK---GPVQKVGELLK-------L----RMEKSPEDVKR 204 (608)
T ss_dssp --------TTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCS---SSSSHHHHHHH-------H----HCCSCHHHHHH
T ss_pred --------ECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC---CHHHHHHHHHH-------H----HHHHHHHHHHH
T ss_conf --------16704666666777876665512145430013430---04667999874-------0----04668999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC---CCCCEEEEEECCHHH
Q ss_conf 70341999311145456689579999999999813999599717899999988999999872---499839999439888
Q 005532 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAF 318 (692)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~~~tvIivsHd~~~ 318 (692)
++..+|+. ...++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++++ +.++|||+||||+++
T Consensus 205 ~l~~~gl~-~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~ 283 (608)
T 3j16_B 205 YIKILQLE-NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV 283 (608)
T ss_dssp HHHHHTCT-GGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH
T ss_pred HHHHCCCC-CHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 99975996-03278827789999999999999986899999989644799999999999999998679989999679999
Q ss_pred HHHHCCEEEEEECCEEE--EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98444858997233377--8216858999999999999999999999999999999998515976111358999999998
Q 005532 319 LDQLCTKIVETEMGVSR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQ 396 (692)
Q Consensus 319 l~~~~~~i~~l~~G~~~--~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~ 396 (692)
+..+||+|+++.++... .+...++. . . . ....+.......
T Consensus 284 ~~~~~drv~vl~~~~~~~~~~~~~~~~--~--~-~-----------------~~~~~~~~~~~~---------------- 325 (608)
T 3j16_B 284 LDYLSDFVCIIYGVPSVYGVVTLPASV--R--E-G-----------------INIFLDGHIPAE---------------- 325 (608)
T ss_dssp HHHHCSEEEEEESCTTTEEEECCCEEH--H--H-H-----------------HHHHHHTEETTT----------------
T ss_pred HHHHCCEEEEEECCCCCCCEECCCHHH--H--H-H-----------------HHHHHCCCCCHH----------------
T ss_conf 998699999993885324210475408--9--9-9-----------------987641345233----------------
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEECCC-EECCCCEEEEEECC-----CEEEEECCCCCCHHHHHHHH
Q ss_conf 8751115221236056327888888752899957999199-20100102899479-----78999928999489999999
Q 005532 397 EEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERG-----EKTAIIGPNGCGKSTLLKLI 470 (692)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~-~~ll~~isl~i~~G-----e~v~ivG~NGsGKSTLl~lL 470 (692)
..........+..+. ......+...++.+.|++ ...+++++|++.+| |++||+|+||||||||+++|
T Consensus 326 -----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l 398 (608)
T 3j16_B 326 -----NLRFRTEALQFRIAD--ATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLL 398 (608)
T ss_dssp -----TEECSSSCCCCCCSS--SSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHH
T ss_pred -----HHCCCCCCCCCCCCC--CCCCEEEECCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf -----320342000012356--6410033023305983674444686589970685146518999888898699999999
Q ss_pred HCCCCCCEEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHC--CCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 1698997138998775320002213201106988449999999711--04499999998446999320013679899789
Q 005532 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548 (692)
Q Consensus 471 ~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~t~~~~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGq 548 (692)
+|+++|++|+.. . ....+|++|+... ....++.+++..... ......+..++..+++. ...++++.+|||||
T Consensus 399 ~Gl~~p~~G~~~-~--~~~i~~~~q~~~~--~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGq 472 (608)
T 3j16_B 399 AGALKPDEGQDI-P--KLNVSMKPQKIAP--KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGE 472 (608)
T ss_dssp HTSSCCSBCCCC-C--SCCEEEECSSCCC--CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHH
T ss_pred HCCCCCCCCCCC-C--CCCEEEECCCCCC--CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCH-HHHCCCHHHCCHHH
T ss_conf 657878788586-6--7737986054444--5786699999877530324689999999874983-46519932389999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCCEEEEEEC--CEEEEEC
Q ss_conf 99999999863699679984788999988799999999742----95699991698889843668999979--9797706
Q 005532 549 KARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG--SNLQDYA 622 (692)
Q Consensus 549 kqrl~LArall~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d~i~~l~~--g~i~~~~ 622 (692)
|||++|||+|+.+|+||||||||++||..+...+.+.|+++ +.|+|+||||++++..+||+|++|++ |.+. ..
T Consensus 473 kQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~ 551 (608)
T 3j16_B 473 LQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HA 551 (608)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-EC
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCCCEEE-EC
T ss_conf 99999999997389999998988889999999999999999975799899996889999986899999958987377-42
Q ss_pred CCHHHHHH
Q ss_conf 99268999
Q 005532 623 GDYNYYLE 630 (692)
Q Consensus 623 g~y~~y~~ 630 (692)
|...+.+.
T Consensus 552 g~p~~~~~ 559 (608)
T 3j16_B 552 RAPESLLT 559 (608)
T ss_dssp CCCEEHHH
T ss_pred CCHHHHHH
T ss_conf 98699863
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=509.99 Aligned_cols=430 Identities=20% Similarity=0.288 Sum_probs=281.9
Q ss_pred CEECEEEEEEEEECCCEEEEECCCCCCHHHHH---------------------HHHHCCCCCCCCEEE-------ECCCC
Q ss_conf 90003512499977969999968984189999---------------------999779999961799-------87787
Q 005532 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQL---------------------RIIAGQEEPDSGNVI-------KAKSN 160 (692)
Q Consensus 109 ~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl---------------------~~L~G~~~p~~G~v~-------~~~~~ 160 (692)
...+|+++||+|++|++++|+||||||||||+ +++.|+..|+.|.|. +.+..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred ------CEEEEECCCCCCC-------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf ------5699982567568-------------------799899999963289999999999999988420010578887
Q 005532 161 ------MKIAFLSQEFEVS-------------------MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215 (692)
Q Consensus 161 ------~~i~yv~Q~~~~~-------------------~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (692)
..++|++|.+... ...|+.+|+........ ....
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~---------------~~~~------ 168 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLEL---------------TEKE------ 168 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred HHCCCHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC---------------CHHH------
T ss_conf 1025500004651125667777753111123444333457859999997520364---------------3145------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--EEEECCCCCCCCHH
Q ss_conf 7999999999986169000999999770341999311145456689579999999999813999--59971789999998
Q 005532 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLD 293 (692)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~ 293 (692)
..........+... ..++..+|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+.
T Consensus 169 ---------~~~~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 169 ---------AQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp -------------------CHHH-HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ---------HHHHHHHHHHHHHH-HHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf ---------67788889999999-98999759843441497001899999999999999628998789997985689999
Q ss_pred HHHHHHHHHC---CCCCEEEEEECCHHHHHHHCCEEEEE------ECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999872---49983999943988898444858997------23337782168589999999999999999999999
Q 005532 294 TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364 (692)
Q Consensus 294 ~~~~l~~~L~---~~~~tvIivsHd~~~l~~~~~~i~~l------~~G~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ 364 (692)
++.++.++|+ +.+.|||+||||++++. .||+|+++ .+|++. +.|...........
T Consensus 239 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i~-~~g~~~~~~~~~~~-------------- 302 (670)
T 3ux8_A 239 DNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVMNDPNS-------------- 302 (670)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSEE-EEECHHHHHTCTTC--------------
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHH-HCCEEEEECCCCCCCCCEEE-EECCHHHHHCCCHH--------------
T ss_conf 999999999999974998999957879996-29989994466656698899-74089998628415--------------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC-CCCCCCCEEEEEEEEEECCCEECCCCE
Q ss_conf 9999999999851597611135899999999887511152212360563278-888887528999579991992010010
Q 005532 365 EIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGYEDRLLFNRA 443 (692)
Q Consensus 365 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~v~~~y~~~~ll~~i 443 (692)
. ....+ . .... ...+. ...+....+++.+. ...+++++
T Consensus 303 -~--~~~~~---~------------------------~~~~------~~~~~~~~~~~~~~~~~~~~-----~~~~L~~v 341 (670)
T 3ux8_A 303 -L--TGQYL---S------------------------GKKF------IPIPAERRRPDGRWLEVVGA-----REHNLKNV 341 (670)
T ss_dssp -H--HHHHH---T------------------------TSSC------CCCCSSCCCCCSCEEEEEEE-----CSTTCCSE
T ss_pred -H--HHHHH---C------------------------CCCC------CCCCCCCCCCCCCCEEECCC-----CCCCCCCC
T ss_conf -8--99985---0------------------------5422------34665444556650121475-----30123454
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHH----------------------CCCCCCEEEEEECCCCCEE----------E
Q ss_conf 2899479789999289994899999991----------------------6989971389987753200----------0
Q 005532 444 NLTIERGEKTAIIGPNGCGKSTLLKLIM----------------------GLEKPRGGEVLLGEHNVLP----------N 491 (692)
Q Consensus 444 sl~i~~Ge~v~ivG~NGsGKSTLl~lL~----------------------g~~~p~~G~i~~~~~~~~~----------~ 491 (692)
||+|++|+++||+|+||||||||+++|. |+..+ .|.+.+++.++.. +
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 420 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTG 420 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHT
T ss_pred EEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCCCCCCHHHHHH
T ss_conf 1674589889999117988889999998998887754202454443210121246-752674056677887764153420
Q ss_pred E-----------------------E------------------CCCC------------------------------HHH
Q ss_conf 2-----------------------2------------------1320------------------------------110
Q 005532 492 Y-----------------------F------------------EQNQ------------------------------AEA 500 (692)
Q Consensus 492 ~-----------------------~------------------~q~~------------------------------~~~ 500 (692)
+ + .+.. ...
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (670)
T 3ux8_A 421 VFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIA 500 (670)
T ss_dssp HHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHH
T ss_pred HHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHEEECCCCHH
T ss_conf 46789998612513333166611144357777565135663474202225555110565567554744442021577788
Q ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CEEEEECCCCCCCHH
Q ss_conf 69884499999997110449999999844699932001367989978999999999863699---679984788999988
Q 005532 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIP 577 (692)
Q Consensus 501 l~~~~t~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p---~iLlLDEPTn~LD~~ 577 (692)
.....++.+++...............+..+++.....++++.+||||||||++|||||+.+| +||||||||++||..
T Consensus 501 ~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~ 580 (670)
T 3ux8_A 501 EVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD 580 (670)
T ss_dssp HHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 87647799999999874657899999998699601204970128999999999999996088899489996987799999
Q ss_pred HHHHHHHHHHHC---CCEEEEEECCHHHHHHHCCEEEEE------ECCEEEEECCCHHHHH
Q ss_conf 799999999742---956999916988898436689999------7997977069926899
Q 005532 578 SKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNYYL 629 (692)
Q Consensus 578 s~~~l~~~L~~~---~~tvI~VSHd~~~i~~~~d~i~~l------~~g~i~~~~g~y~~y~ 629 (692)
+...+.+.|+++ +.|||+||||.+++. .||+|++| ++|++.. .|..++..
T Consensus 581 ~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~-~g~~~~~~ 639 (670)
T 3ux8_A 581 DIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVA-VGTPEEVA 639 (670)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEE-EECHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHH-HCCEEEEECCCCCCCCCEEEE-ECCHHHHH
T ss_conf 999999999999977998999959889998-599999965776788988999-66999997
No 9
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=1.00 E-value=1 Score=399.36 Aligned_cols=337 Identities=22% Similarity=0.257 Sum_probs=241.8
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--EEEECCCCCCCCHHHHHHHHHHH---CCCCC
Q ss_conf 00999999770341999311145456689579999999999813999--59971789999998899999987---24998
Q 005532 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYL---GKQDV 307 (692)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L---~~~~~ 307 (692)
+++..+++ .+..+|+....+++++.+|||||+|||+||++|..+|+ +|||||||++||+...++|.++| +..|.
T Consensus 354 ~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~ 432 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN 432 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999-99868998677667767689999999999999852888708996275245999999999999999997599
Q ss_pred EEEEEECCHHHHHHHCCEEEEE------ECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3999943988898444858997------2333778216858999999999999999999999999999999998515976
Q 005532 308 PMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (692)
Q Consensus 308 tvIivsHd~~~l~~~~~~i~~l------~~G~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 381 (692)
|||+|+||++++. .||+|+++ .+|.+ .+.|++..+....... ....+. .
T Consensus 433 TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~i-v~~g~~~~~~~~~~~~-----------------~~~~l~---~--- 487 (842)
T 2vf7_A 433 SLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEI-LYSGPPEGLKHVPESQ-----------------TGQYLF---A--- 487 (842)
T ss_dssp EEEEECCCHHHHT-TCSEEEEECSSSGGGCCSE-EEEECGGGGGGCTTCH-----------------HHHHHH---T---
T ss_pred EEEEECCCHHHHH-HCCEEEEECCCCCCCCCEE-EEECCHHHHHHCHHHH-----------------HHHHHH---H---
T ss_conf 8999917889998-4999999578766699789-9964899987566778-----------------998864---2---
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCC
Q ss_conf 11135899999999887511152212360563278888887528999579991992010010289947978999928999
Q 005532 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (692)
Q Consensus 382 ~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGs 461 (692)
....+ |.....+..+|+++++++ ..|+++||+|++|+++||+|+|||
T Consensus 488 ------------------~~~~~----------~~~~~~~~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGS 534 (842)
T 2vf7_A 488 ------------------DRHTE----------PHTPREPAGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGS 534 (842)
T ss_dssp ------------------CCCCC----------CCCCCCCSCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTS
T ss_pred ------------------CCCCC----------CCCCCCCCCEEEEEEEEE-----CCCCCCEEEECCCCEEEEECCCCC
T ss_conf ------------------02233----------346678985289973054-----451451699868978999848985
Q ss_pred CHHHHHHH-HHCCC-------CC------------------CEE-------EEEECCCCCE-------------------
Q ss_conf 48999999-91698-------99------------------713-------8998775320-------------------
Q 005532 462 GKSTLLKL-IMGLE-------KP------------------RGG-------EVLLGEHNVL------------------- 489 (692)
Q Consensus 462 GKSTLl~l-L~g~~-------~p------------------~~G-------~i~~~~~~~~------------------- 489 (692)
|||||++. |+|.+ .| .+| .+.+++..+.
T Consensus 535 GKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~ 614 (842)
T 2vf7_A 535 GKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRK 614 (842)
T ss_dssp SHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 89999999999888887267777655433222223455434567612353399987800788865541123217899999
Q ss_pred --------------EEEECCCCHH----------------HCC------------------------CCCCHHHH-----
Q ss_conf --------------0022132011----------------069------------------------88449999-----
Q 005532 490 --------------PNYFEQNQAE----------------ALD------------------------LDKTVLET----- 510 (692)
Q Consensus 490 --------------~~~~~q~~~~----------------~l~------------------------~~~t~~~~----- 510 (692)
+++|.+|... .+. ...++.++
T Consensus 615 ~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv 694 (842)
T 2vf7_A 615 LFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTV 694 (842)
T ss_dssp HHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBH
T ss_pred HHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEECCCCCCCCCCHHHHHHHHCCCCHHHHHHCCH
T ss_conf 97008487762776432433555565400047773013443177630014323574433666766415788999974459
Q ss_pred ---HHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC---CCEEEEECCCCCCCHHHHHHHHH
Q ss_conf ---999711044999999984469993200136798997899999999986369---96799847889999887999999
Q 005532 511 ---VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP---STLLVLDEPTNHLDIPSKEMLEE 584 (692)
Q Consensus 511 ---~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~---p~iLlLDEPTn~LD~~s~~~l~~ 584 (692)
+...........+..+|..+++.....++++.+||||||||++||++|+.+ |+||||||||++||..+...+.+
T Consensus 695 ~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~ 774 (842)
T 2vf7_A 695 DEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR 774 (842)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 99998862126799999999986998231358811099999999999999972899997899879878999999999999
Q ss_pred HHHHC---CCEEEEEECCHHHHHHHCCEEEEE------ECCEEEEECCCHHHHHH
Q ss_conf 99742---956999916988898436689999------79979770699268999
Q 005532 585 AISEY---KGTVITVSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 585 ~L~~~---~~tvI~VSHd~~~i~~~~d~i~~l------~~g~i~~~~g~y~~y~~ 630 (692)
.|++. +.|||+||||++++ .+||+|++| ++|++.. .|+.+++..
T Consensus 775 lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~-~g~~~el~~ 827 (842)
T 2vf7_A 775 QLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVA-QGTPAEVAQ 827 (842)
T ss_dssp HHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEE-EECHHHHTT
T ss_pred HHHHHHHCCCEEEEECCCHHHH-HHCCEEEEECCCCCCCCCEEEE-ECCHHHHHH
T ss_conf 9999986799899982888999-8499999977877777988999-708999973
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=391.90 Aligned_cols=334 Identities=21% Similarity=0.313 Sum_probs=232.2
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--EEEECCCCCCCCHHHHHHHHHHHC---CCCCEEEEEE
Q ss_conf 99770341999311145456689579999999999813999--599717899999988999999872---4998399994
Q 005532 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~--iLLLDEPts~LD~~~~~~l~~~L~---~~~~tvIivs 313 (692)
..+.+..+|+.....++++.+|||||+|||+|||+|+.+|+ +|||||||+|||+...++|.++|+ +.|.|||+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99999976982012468712099999999999999822899868999797347999999999999999986699899995
Q ss_pred CCHHHHHHHCCEEEEE------ECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 3988898444858997------2333778216858999999999999999999999999999999998515976111358
Q 005532 314 HDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (692)
Q Consensus 314 Hd~~~l~~~~~~i~~l------~~G~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 387 (692)
||++++.. ||+|+++ .+|.+ .+.|.+..+...... ......+. .
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~i-v~~G~~~e~~~~~~~----------------~~~~~~l~---~--------- 573 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRV-VFQGTVDELLKNPDS----------------SLTGEYLS---G--------- 573 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEE-EEEECHHHHHHSCTT----------------CHHHHHHH---S---------
T ss_pred CCHHHHHH-CCEEEEECCCCCCCCCEE-EEEECHHHHHCCCHH----------------CCHHHHHH---C---------
T ss_conf 89999985-999999758742579778-874110444227011----------------00145541---4---------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHH
Q ss_conf 99999999887511152212360563278888887528999579991992010010289947978999928999489999
Q 005532 388 AEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL 467 (692)
Q Consensus 388 ~~~~l~rl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl 467 (692)
... ...+.........+.+.+++ ...|+++||+|++|++++|+|+||||||||+
T Consensus 574 --------------~~~-------~~~~~~~~~~~~~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 574 --------------KRK-------ITVNKTRRLPYASLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp --------------SSC-------CCCCSSCCCCSSEEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred --------------CCC-------CCCCCCCCCCCCEEEEEEEC-----CCCCCCCCEEECCCCEEEEECCCCCCHHHHH
T ss_conf --------------421-------22322333455508985303-----4433653128718959999925888815457
Q ss_pred ---------HHHHCCCCCC------EEE------EEECCCCCE--E----------------------------------
Q ss_conf ---------9991698997------138------998775320--0----------------------------------
Q 005532 468 ---------KLIMGLEKPR------GGE------VLLGEHNVL--P---------------------------------- 490 (692)
Q Consensus 468 ---------~lL~g~~~p~------~G~------i~~~~~~~~--~---------------------------------- 490 (692)
+++.+...+. .|. +.++...+. +
T Consensus 628 ~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~f 707 (916)
T 3pih_A 628 METLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRF 707 (916)
T ss_dssp HHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGG
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCC
T ss_conf 77777899987403445666533335510114257631565566555564302236788999861266877504555431
Q ss_pred ---------------EEECCCCH-------------------HH-----------CCCCCCHHHHHHHHHCCCCHHHHHH
Q ss_conf ---------------02213201-------------------10-----------6988449999999711044999999
Q 005532 491 ---------------NYFEQNQA-------------------EA-----------LDLDKTVLETVAEAAEDWRIDDIKG 525 (692)
Q Consensus 491 ---------------~~~~q~~~-------------------~~-----------l~~~~t~~~~~~~~~~~~~~~~~~~ 525 (692)
+++.++.. .. .....++.+++...........+..
T Consensus 708 s~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~ 787 (916)
T 3pih_A 708 SFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQ 787 (916)
T ss_dssp CTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCHHHHHHHH
T ss_conf 11146664432367634877410167615632201464356665543015677787740779999998751505899999
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CEEEEECCCCCCCHHHHHHHHHHHHHC---CCEEEEEECC
Q ss_conf 9844699932001367989978999999999863699---679984788999988799999999742---9569999169
Q 005532 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHD 599 (692)
Q Consensus 526 ~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p---~iLlLDEPTn~LD~~s~~~l~~~L~~~---~~tvI~VSHd 599 (692)
.|..+|+.....++++.+|||||+||++|||+|+++| +||||||||++||..+.+.|.+.|++. +.|||+|+||
T Consensus 788 ~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~Hd 867 (916)
T 3pih_A 788 VLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN 867 (916)
T ss_dssp HHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99981886333168715799999999999999962878897899979888999999999999999999669989999379
Q ss_pred HHHHHHHCCEEEEE------ECCEEEEECCCHHHHHH
Q ss_conf 88898436689999------79979770699268999
Q 005532 600 RYFVKQIVNRVVEV------KGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 600 ~~~i~~~~d~i~~l------~~g~i~~~~g~y~~y~~ 630 (692)
++++.. ||+|++| ++|++.. .|..++...
T Consensus 868 L~~i~~-ADrIivLgp~gg~~~G~Iv~-~Gtpeel~~ 902 (916)
T 3pih_A 868 LDVIKN-ADHIIDLGPEGGKEGGYIVA-TGTPEEIAK 902 (916)
T ss_dssp HHHHTT-CSEEEEEESSSGGGCCEEEE-EESHHHHHS
T ss_pred HHHHHH-CCEEEEECCCCCCCCCEEEE-ECCHHHHHH
T ss_conf 999972-99999966877778978999-769999974
Done!