BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005534
(692 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 132/305 (43%), Gaps = 32/305 (10%)
Query: 377 LEKLKIQFTEIFEGEAGADICTRFRELEKLLVHASSGVFWEFGLQIEGNADG-LPPPKDG 435
L++ K +F ++ +G A A + L + + +F I+ + D PKDG
Sbjct: 275 LKQTKPEFDQVLQGTA-ASTKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDG 333
Query: 436 SVPKLVRYAINYLKYLATETYSVSMAKVLRTEQIWKAGILSKPETHENLLKEAISNIMEA 495
+V +L AI +L+ L + + +L +++ + E + LL I ++
Sbjct: 334 TVHELTSNAILFLQQLLD--FQETAGAMLASQETSSSATSYSSEFSKRLLSTYICKVLGN 391
Query: 496 LQRNIESKRSYYKDRVMPHVFSMNTYWYIYMRTRNTELGKLIG--EQDMKEKYKVVAEES 553
LQ N+ SK Y+D + +F N Y YI +EL +L+ ++ + Y+ E+
Sbjct: 392 LQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQ 451
Query: 554 AYMYQ--------------MQAWGPLVGLLDMEEEANDAGVAVIRGKMEAFLKGFDEISQ 599
YQ + + P V L D E + +I+ + + F G +E+ +
Sbjct: 452 IQTYQRSWLKVTDYIAEKNLPVFQPGVKLRDKERQ-------MIKERFKGFNDGLEELCK 504
Query: 600 RHRGFYNIPDVDLRGQIREATVKFLIPAYTEFLNSNSTLVQAKSYVSPES-IEGLLGQIF 658
+ + IPD + R +IR+A + Y FL+ ++ K +PE I+ + Q+
Sbjct: 505 IQK-VWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTK---NPEKYIKYRVEQVG 560
Query: 659 DGADR 663
D DR
Sbjct: 561 DMIDR 565
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 192 DQALLNLQDEFEGILLQARHQNINEL--SEDKEADQMVPSDLASELEVQVLSRISE 245
+ AL + Q + E + + R +E+ SE EADQ +PS LA+ ++ +L RI +
Sbjct: 676 EDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLATAVDKAMLQRIGD 731
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 192 DQALLNLQDEFEGILLQARHQNINEL--SEDKEADQMVPSDLASELEVQVLSRISE 245
+ AL + Q + E + + R +E+ SE EADQ +PS LA+ ++ +L RI +
Sbjct: 431 EDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLATAVDKAMLQRIGD 486
>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3TRR|B Chain B, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3TRR|C Chain C, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3TRR|D Chain D, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3TRR|E Chain E, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3TRR|F Chain F, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
Length = 256
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 14/101 (13%)
Query: 565 LVGLLDMEEEANDAGVAVIRGK---------MEAFLKGFDEISQRHRGFYNIPDVDLRGQ 615
L D + + D VA+I G ++AF+ G +S+R GF N+P R
Sbjct: 39 LAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFTNVPP---RKP 95
Query: 616 IREATVKFLIPAYTEFLNSNSTLVQAKS--YVSPESIEGLL 654
I A F + TE + S +V +S + PE GL+
Sbjct: 96 IIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLV 136
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 516 FSMNTYWYIYMRTRNTELGKLIGEQDMKEKYKVV--AEESAYMYQMQAWGP 564
FS NT+ + R R L + IG+Q + K + A E+ +++ M WGP
Sbjct: 8 FSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGP 58
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 200 DEFEGILLQARHQNINELSEDKEADQMVPSDLASELEVQVLSRIS-----ETLAANDCLD 254
++F G L RH +I + K + + D L++ VL R S +T ++ L
Sbjct: 67 EDFAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLG 126
Query: 255 ICIDIFVK 262
CID+FV+
Sbjct: 127 ACIDLFVE 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,248,193
Number of Sequences: 62578
Number of extensions: 722464
Number of successful extensions: 1881
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1875
Number of HSP's gapped (non-prelim): 13
length of query: 692
length of database: 14,973,337
effective HSP length: 106
effective length of query: 586
effective length of database: 8,340,069
effective search space: 4887280434
effective search space used: 4887280434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)