Query 005534
Match_columns 692
No_of_seqs 218 out of 511
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 18:27:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005534.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2041-2045//hhsearch_pdb/005534hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 1.0 1 1 786.5 44.2 518 81-662 2-571 (571)
2 2b1e_A Exocyst complex compone 1.0 1 1 760.6 47.3 521 70-658 1-563 (564)
3 3odn_A Dally-like protein; alp 1.0 1 1 18.9 1.8 26 542-569 401-426 (506)
4 3khk_A Type I restriction-modi 1.0 1 1 16.0 2.9 20 615-634 478-497 (544)
5 3lkd_A Type I restriction-modi 1.0 1 1 15.4 3.9 11 533-543 354-364 (542)
6 3lpz_A GET4 (YOR164C homolog); 1.0 1 1 14.4 2.8 35 627-663 280-317 (336)
7 1ji8_A Dissimilatory siroheme- 1.0 1 1 13.7 -0.0 41 622-663 53-95 (111)
8 3ci9_A Heat shock factor-bindi 1.0 1 1 13.5 4.2 42 13-57 5-47 (48)
9 1sau_A Sulfite reductase, desu 1.0 1 1 13.3 -1.3 57 623-679 52-115 (115)
10 4e9m_A Nucleotide-binding olig 1.0 1 1 13.3 3.6 99 1-149 15-113 (144)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=1.00 E-value=1 Score=786.47 Aligned_cols=518 Identities=18% Similarity=0.304 Sum_probs=444.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHH
Q ss_conf 99888667865888799964320000122818966618989999999999999864079502345678899852022204
Q 005534 81 ALALVDSFKLAESLQHRLLQLSSRASSLRDSQKRLKLLLKYVDCVDQLNATLNTINQDGEPVIHKLQEVVEFLSRTKATD 160 (692)
Q Consensus 81 i~~v~~~~d~~~~~E~~i~~~~~~~~~~~gp~~d~~~l~~Yl~av~~L~~al~~l~~~~~~~~~~l~~~~~f~~~~~~~~ 160 (692)
+++|+++||++++.|.+|. .||. .++.+||+||++|.++++|+.++++. +.
T Consensus 2 ae~v~~~~d~~~~~e~~i~---------~gp~---~~l~~yL~av~~l~~a~~~~~~~~~~-s~---------------- 52 (571)
T 2pft_A 2 SDHVISYYHVASDTEKIIR---------EGPT---GRLEEYLGSMAKIQKAVEYFQDNSPD-SP---------------- 52 (571)
T ss_dssp -CTTSTHHHHHHHHHHHHH---------HCCT---TCHHHHHHHHHHHHHHHHHHHHHSTT-CH----------------
T ss_pred HHHHHHHHCCCHHHHHHHH---------CCCH---HHHHHHHHHHHHHHHHHHHHHHCCCC-HH----------------
T ss_conf 8889998715305665663---------4967---34999999999999999998736997-38----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CCCCCCCCCC
Q ss_conf 677653499799987432202442159999999999999999999963044788875454100-------2589888889
Q 005534 161 QFRTHRLRETLVTLKALYETEVDAMRFEGLLDQALLNLQDEFEGILLQARHQNINELSEDKEA-------DQMVPSDLAS 233 (692)
Q Consensus 161 ~~~~~rl~~~l~~l~~~~~~~~~~~~~~~Ll~~a~~~Le~eF~~lL~~~~~p~~p~~~~~~~~-------~~~~~~~~~~ 233 (692)
+ ..++++|+++||.+||+||+.||..++.|++|..+..... ....+++.+|
T Consensus 53 ~----------------------l~~~~~Ll~~a~~~Le~eF~~lL~~~~~~~~p~~ll~~~~~~~~~~~~~~~~~~~~~ 110 (571)
T 2pft_A 53 E----------------------LNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLLLDLISADDELEVQEDVVLEHLP 110 (571)
T ss_dssp H----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCC--------SSC
T ss_pred H----------------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 9----------------------999999999999999999999999669688848887405665566755566656799
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC---------------------CCCCHHHHHCCC
Q ss_conf 78799999999999859980169899999769999999981094211---------------------268923431036
Q 005534 234 ELEVQVLSRISETLAANDCLDICIDIFVKVRYRRAAKALMQLNPDYL---------------------KTYTPEQIDEME 292 (692)
Q Consensus 234 ~~~i~~L~~Ia~~l~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~~~~l---------------------~~~s~e~~~k~~ 292 (692)
++++++|+.||+||+.+||.++|+++|+++|++++.++|..|+++.. .+.++.++++ +
T Consensus 111 ~~~~~~L~~Ia~~m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 189 (571)
T 2pft_A 111 ESVLRDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPG-R 189 (571)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
T ss_conf 999999999999998848736999999999999999999999987740243433222310033445630012101365-0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCH--HHHHH
Q ss_conf 787899998799999999999999999999874179887044648999999999999997789885-058883--55555
Q 005534 293 WESLETAITLWIQHLELAVKTVIVSEKRLSIQVLGGIMDGVIWRECFVKIADKLMAVFFRFGEGVA-RSSKEP--QKLFK 369 (692)
Q Consensus 293 ~~~l~~~i~~wi~~~~~av~~l~~~E~~L~~~vf~~~~~~~~~~~~f~~i~~~~~~~ll~f~~~va-~~~~sp--eklf~ 369 (692)
|+.++.+|.+|++++.+++ .||++||+||++||+. +.+..||.++|++++.+|++|+++|+ .++|+| +++|.
T Consensus 190 ~e~~~~~i~~wi~~~~~~~-~l~~~Er~L~~~vf~~----~~~~~~F~~i~~~~~~~ll~f~e~v~~~~kr~~~~~~~~~ 264 (571)
T 2pft_A 190 DDMLDVETDAYIHCVSAFV-KLAQSEYRLLMEIIPE----HHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFST 264 (571)
T ss_dssp ---CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCST
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 6778877889999999999-9999999999987386----2087899999999999999999999987303864002589
Q ss_pred HHHHHHH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHH
Q ss_conf 6219999---98629999986137861678999999999999989799999999984378-9998887786472289999
Q 005534 370 LLDMFDS---LEKLKIQFTEIFEGEAGADICTRFRELEKLLVHASSGVFWEFGLQIEGNA-DGLPPPKDGSVPKLVRYAI 445 (692)
Q Consensus 370 lLdm~e~---L~~l~p~~~~lf~~~~~~~i~~~~~~ll~~L~~~~~~~l~ef~~~I~~~~-~~~~~p~dG~Vh~lT~~vm 445 (692)
+++||+. |.+++|+|+.+|.|+.+ .++.++.+++++|+++++++|.||.+.|++++ ++.++|.||+|||+|+|||
T Consensus 265 ~l~l~~~l~~l~~l~p~~~~~f~g~~~-~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vm 343 (571)
T 2pft_A 265 VLTVFPILRHLKQTKPEFDQVLQGTAA-STKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAI 343 (571)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 999999999999877999999766764-7899999999999999999999999999832356788999996056799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999435213999999981001-10126789998854259999999999999999967501788885430411238888
Q 005534 446 NYLKYLATETYSVSMAKVLRTEQ-IWKAGILSKPETHENLLKEAISNIMEALQRNIESKRSYYKDRVMPHVFSMNTYWYI 524 (692)
Q Consensus 446 nyL~~L~~~~y~~~L~~iL~~~~-~w~~~~~~~~~~~~~~l~~~i~~iI~~L~~nLe~KSk~ykd~aL~~iFLlNN~~yI 524 (692)
|||+.|+ +|+++|+.+|.... +|.... ..++++.++|+.++.++|++|+.|||.||+.|+|++|++||||||+|||
T Consensus 344 nyl~~L~--~y~~~l~~il~~~~~~~~~~~-~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI 420 (571)
T 2pft_A 344 LFLQQLL--DFQETAGAMLASQETSSSATS-YSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYI 420 (571)
T ss_dssp HHHHHHH--HTHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999--658999999853678865456-7788751389999999999999999999763776199999999659999
Q ss_pred HHHHCCCCHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCC---CCCHHHHHHHHHHHHHH
Q ss_conf 88423760144125---23699989999999999989741565652013356-----645---10368999999999999
Q 005534 525 YMRTRNTELGKLIG---EQDMKEKYKVVAEESAYMYQMQAWGPLVGLLDMEE-----EAN---DAGVAVIRGKMEAFLKG 593 (692)
Q Consensus 525 ~~~v~~SeL~~lLg---~~w~~~~~~~~~~q~~~~Yl~~sW~~vl~~L~~~~-----sg~---~~~k~~iKekfk~FN~~ 593 (692)
++++++|+|..+|| ++|++++.+++ +||++.| +++|++|++||.+++ +|+ +++|+.+||||++||.+
T Consensus 421 ~~~v~~s~l~~llg~~~~~~~~~~~~~i-~~~~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ls~~~r~~iKe~fk~Fn~~ 498 (571)
T 2pft_A 421 LKSLEKSELIQLVAVTQKTAERSYREHI-EQQIQTY-QRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDG 498 (571)
T ss_dssp HTTTTTSTHHHHHHTTCTTHHHHHHHHH-HHHHHHH-HGGGHHHHTTTSGGGSCSSCCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHCCCHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9998502368774763568999999999-9999999-9999999998622167767788776721489999999999999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCC--CCHHHHHHHHHHHHCCCC
Q ss_conf 9999987115521359779999999999989999999998601388---99766--796779999977418999
Q 005534 594 FDEISQRHRGFYNIPDVDLRGQIREATVKFLIPAYTEFLNSNSTLV---QAKSY--VSPESIEGLLGQIFDGAD 662 (692)
Q Consensus 594 FEE~~~~q~~~w~VpD~~LR~~Lr~~i~~~ViPaY~~F~~ry~~~~---~~~ky--ytpe~Le~~L~~LF~g~~ 662 (692)
|||+|++| +.|+||||+||+.||.+|.++|+|+|++||+||++.. |++|| |||++||++|++||+|++
T Consensus 499 Fee~~~~q-~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~~L~~LFeg~a 571 (571)
T 2pft_A 499 LEELCKIQ-KVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDRLFDTSA 571 (571)
T ss_dssp HHHHHHHH-TTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHHHHHTSSSCC-
T ss_pred HHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999967-84228689999999999999999999999998576765679977402589999999999838789
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=1.00 E-value=1 Score=760.56 Aligned_cols=521 Identities=16% Similarity=0.221 Sum_probs=448.7
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 98868874203998886678658887999643200001228189666189899999999999998640795023456788
Q 005534 70 LETRINRAVSPALALVDSFKLAESLQHRLLQLSSRASSLRDSQKRLKLLLKYVDCVDQLNATLNTINQDGEPVIHKLQEV 149 (692)
Q Consensus 70 ~~~nI~~~l~~i~~v~~~~d~~~~~E~~i~~~~~~~~~~~gp~~d~~~l~~Yl~av~~L~~al~~l~~~~~~~~~~l~~~ 149 (692)
.|+|||++++++++|++++|.++++|.+|. .||.. .|+++||+||+++++|++||+++|+... +.
T Consensus 1 ~~~NId~~l~~i~~v~~~~~~~~~~e~iI~---------~Gp~~--~~l~~Yl~al~rl~~al~~~~~~n~~s~----e~ 65 (564)
T 2b1e_A 1 GHMNIESTLNSVASVKDLANEASKYEIILQ---------KGINQ--VGLKQYTQVVHKLDDMLEDIQSGQANRE----EN 65 (564)
T ss_dssp -------CCGGGCCHHHHHHHHHHHHHHHH---------TCHHH--HCHHHHHHHHHHHHHHHHHHHC----CC----CS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---------CCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCCCH----HH
T ss_conf 932099999999999989988889999986---------49862--4689999999999999999985487750----23
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99852022204677653499799987432202442159999999999999999999963044788875454100258988
Q 005534 150 VEFLSRTKATDQFRTHRLRETLVTLKALYETEVDAMRFEGLLDQALLNLQDEFEGILLQARHQNINELSEDKEADQMVPS 229 (692)
Q Consensus 150 ~~f~~~~~~~~~~~~~rl~~~l~~l~~~~~~~~~~~~~~~Ll~~a~~~Le~eF~~lL~~~~~p~~p~~~~~~~~~~~~~~ 229 (692)
.+| .+. ..++.+|+++|+.+|+.||+.+|+. +.|++|... +++ ..|+
T Consensus 66 ~~f----------------------~g~------l~~~~~L~~~g~~~L~~~F~~lL~~-s~p~~p~~~---i~k-~~p~ 112 (564)
T 2b1e_A 66 SEF----------------------HGI------LTHLEQLIKRSEAQLRVYFISILNS-IKPFDPQIN---ITK-KMPF 112 (564)
T ss_dssp HHH----------------------HHH------HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHH---HHH-TCCC
T ss_pred HHH----------------------HHH------HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHH---HCC-CCCC
T ss_conf 446----------------------789------9999999999999999999999972-789987886---136-7888
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88897879999999999985998016989999976999999998109421126892343103678789999879999999
Q 005534 230 DLASELEVQVLSRISETLAANDCLDICIDIFVKVRYRRAAKALMQLNPDYLKTYTPEQIDEMEWESLETAITLWIQHLEL 309 (692)
Q Consensus 230 ~~~~~~~i~~L~~Ia~~l~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~~~~l~~~s~e~~~k~~~~~l~~~i~~wi~~~~~ 309 (692)
|.+|++++.+|+.||+||+.+|+.++|+++|+++|+.++.+||.+|++.. ......++++|+.++.+|..|+.++
T Consensus 113 p~l~~~~l~~L~~Ia~~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~---k~~~~~~~~~~e~~~~~i~~~~~a~-- 187 (564)
T 2b1e_A 113 PYYEDQQLGALSWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFA---KEISTAKNAPYEKGSSGMNSYTEAL-- 187 (564)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTC---C------------CCSTHHHHHHHH--
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCHHHHCCHHHHHHHHH--
T ss_conf 88898999999999999986588438999999999999999999743020---1314556775565131899999999--
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998741798870446489999999999999977898-85058883-55555621999998629999986
Q 005534 310 AVKTVIVSEKRLSIQVLGGIMDGVIWRECFVKIADKLMAVFFRFGEG-VARSSKEP-QKLFKLLDMFDSLEKLKIQFTEI 387 (692)
Q Consensus 310 av~~l~~~E~~L~~~vf~~~~~~~~~~~~f~~i~~~~~~~ll~f~~~-va~~~~sp-eklf~lLdm~e~L~~l~p~~~~l 387 (692)
..++.+|+.||++||+. .++.+..||..+|++++..+....+. .+.++++| +++|.+||||++|.++. .+
T Consensus 188 --~~l~~~E~~L~~~vf~~--~~~~~~~~f~~i~~~~l~~~~~~l~~~~~~~k~~~~~~~f~~l~~~~~l~~~~----~~ 259 (564)
T 2b1e_A 188 --LGFIANEKSLVDDLYSQ--YTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVK----KS 259 (564)
T ss_dssp --HHHHHHHHHHHHHHSCT--TCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCTHHHHHHHHHHHHH----HH
T ss_pred --HHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHH----HH
T ss_conf --99999999999998087--50156779999999999999999998999986082321036877999999999----99
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13786167899999999999998979999999998437899-98887786472289999999994352139999999810
Q 005534 388 FEGEAGADICTRFRELEKLLVHASSGVFWEFGLQIEGNADG-LPPPKDGSVPKLVRYAINYLKYLATETYSVSMAKVLRT 466 (692)
Q Consensus 388 f~~~~~~~i~~~~~~ll~~L~~~~~~~l~ef~~~I~~~~~~-~~~p~dG~Vh~lT~~vmnyL~~L~~~~y~~~L~~iL~~ 466 (692)
|.+..+. ...++.+++++|+++++++|+||.+.|++++++ .++|+||+|||+|+||||||+.|+ +|+.+|..++..
T Consensus 260 ~~~~~~~-~~~~~~~~l~~L~~~~~~~~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~--~y~~~l~~~l~~ 336 (564)
T 2b1e_A 260 LRGKELQ-NYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFS--EYKNGCLGAMDN 336 (564)
T ss_dssp TTTCCCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHG--GGHHHHHHHTTT
T ss_pred HCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_conf 7456600-3999999999999999999999999998345778889999934677999999999999--627899999985
Q ss_pred H--CCCCCCCCC-----------CCCCCCCHHHHHHHHHHHHHHHHHHHH------------------HHCCCCCCCCCC
Q ss_conf 0--110126789-----------998854259999999999999999967------------------501788885430
Q 005534 467 E--QIWKAGILS-----------KPETHENLLKEAISNIMEALQRNIESK------------------RSYYKDRVMPHV 515 (692)
Q Consensus 467 ~--~~w~~~~~~-----------~~~~~~~~l~~~i~~iI~~L~~nLe~K------------------Sk~ykd~aL~~i 515 (692)
. ++|.++... .++++.++|++|+.++|++|+.|||.| |+.|+|++++ +
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~ 415 (564)
T 2b1e_A 337 ITRENWLPSNYKEKEYTLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-F 415 (564)
T ss_dssp CCGGGTSCTTCCGGGSCCCC----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-H
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHH-H
T ss_conf 245677764443322344443456887534699999999999999999876452555321000232133214789999-8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---C-C-CCCCHHHHHHHHHHH
Q ss_conf 4112388888842376014412523699989999999999989741565652013356---6-4-510368999999999
Q 005534 516 FSMNTYWYIYMRTRNTELGKLIGEQDMKEKYKVVAEESAYMYQMQAWGPLVGLLDMEE---E-A-NDAGVAVIRGKMEAF 590 (692)
Q Consensus 516 FLlNN~~yI~~~v~~SeL~~lLg~~w~~~~~~~~~~q~~~~Yl~~sW~~vl~~L~~~~---s-g-~~~~k~~iKekfk~F 590 (692)
|||||+|||++++++|+|..+||++|++++.+ ++++| ..|++++|++|++||.+++ + | ++++|+.+||||++|
T Consensus 416 FllNN~~yI~~~v~~SeL~~lLg~~~~~~~~~-~~~~~-~~y~~~sW~~v~~~L~~~~~~~~~~ks~~~k~~iKe~fk~F 493 (564)
T 2b1e_A 416 FILMNLTLVEQIVEKSELNLMLAGEGHSRLER-LKKRY-ISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKF 493 (564)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHTTTHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99976999999971320686756799999999-99999-99999999999998830366777787622389999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCC--CCHHHHHHHHHHHH
Q ss_conf 9999999987115521359779999999999989999999998601388-99766--79677999997741
Q 005534 591 LKGFDEISQRHRGFYNIPDVDLRGQIREATVKFLIPAYTEFLNSNSTLV-QAKSY--VSPESIEGLLGQIF 658 (692)
Q Consensus 591 N~~FEE~~~~q~~~w~VpD~~LR~~Lr~~i~~~ViPaY~~F~~ry~~~~-~~~ky--ytpe~Le~~L~~LF 658 (692)
|++|||+|++| +.|+||||+||+.||.+|.++|+|+|++||+||+... |++|| |||++||++|++|+
T Consensus 494 N~~Fee~~~~q-~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 494 NEGFEDLVSKT-KQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHHHH-TTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99999999965-86328588999999999999999999999998453368987703679999999999854
No 3
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=18.88 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9998999999999998974156565201
Q 005534 542 MKEKYKVVAEESAYMYQMQAWGPLVGLL 569 (692)
Q Consensus 542 ~~~~~~~~~~q~~~~Yl~~sW~~vl~~L 569 (692)
++++.+++ ++-.+.+. .-|..+-..|
T Consensus 401 l~~lv~d~-~~kl~~~k-~fW~~LP~~~ 426 (506)
T 3odn_A 401 LDRIVRDI-RQRVKDYK-KFWSNLPHSV 426 (506)
T ss_dssp HHHHHHHH-HHHHHHTT-TTTTTHHHHH
T ss_pred HHHHHHHH-HHHHHHHH-HHHHHCCHHH
T ss_conf 99999999-99887888-9998687987
No 4
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=1.00 E-value=1 Score=15.98 Aligned_cols=20 Identities=5% Similarity=0.340 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999899999999986
Q 005534 615 QIREATVKFLIPAYTEFLNS 634 (692)
Q Consensus 615 ~Lr~~i~~~ViPaY~~F~~r 634 (692)
.|..+-.+.|+-+|+.+-+.
T Consensus 478 ~l~~~~i~~I~~~y~~~~~~ 497 (544)
T 3khk_A 478 DFKDEDIQKLADTFHNWQQE 497 (544)
T ss_dssp ECCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHC
T ss_conf 79999999999999986214
No 5
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=1.00 E-value=1 Score=15.41 Aligned_cols=11 Identities=0% Similarity=0.008 Sum_probs=5.3
Q ss_pred HHHHHCHHHHH
Q ss_conf 14412523699
Q 005534 533 LGKLIGEQDMK 543 (692)
Q Consensus 533 L~~lLg~~w~~ 543 (692)
+.-+++..|+-
T Consensus 354 ~a~VlP~g~Lf 364 (542)
T 3lkd_A 354 MAIVLPHGVLF 364 (542)
T ss_dssp EEEEEETHHHH
T ss_pred EEEEECCHHHH
T ss_conf 99993535741
No 6
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=1.00 E-value=1 Score=14.38 Aligned_cols=35 Identities=11% Similarity=0.303 Sum_probs=19.0
Q ss_pred HHHHHHHHCCCCC-C--CCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 9999998601388-9--97667967799999774189998
Q 005534 627 AYTEFLNSNSTLV-Q--AKSYVSPESIEGLLGQIFDGADR 663 (692)
Q Consensus 627 aY~~F~~ry~~~~-~--~~kyytpe~Le~~L~~LF~g~~~ 663 (692)
.|..++++-+..- + +.+ ...-|.+|+..||.|-++
T Consensus 280 ~~~~~L~~IG~~YFgi~~pr--q~n~L~~mmg~lFgGg~~ 317 (336)
T 3lpz_A 280 IWDTALELIAEMYFGIQRPR--QSNPLLDMMGSLFGGGGG 317 (336)
T ss_dssp TTHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHHCCCC-
T ss_pred HHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHCCCCCC
T ss_conf 99999999999971898988--999568898884089988
No 7
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=1.00 E-value=1 Score=13.73 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHCCCCC-CC-CCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 989999999998601388-99-7667967799999774189998
Q 005534 622 KFLIPAYTEFLNSNSTLV-QA-KSYVSPESIEGLLGQIFDGADR 663 (692)
Q Consensus 622 ~~ViPaY~~F~~ry~~~~-~~-~kyytpe~Le~~L~~LF~g~~~ 663 (692)
-.||-.-|.||.+|+.+. -+ -.++....+.. |.+||-+.+.
T Consensus 53 W~VI~flR~~Y~e~~~~P~iR~l~K~~~~~~s~-Ly~LFP~GPa 95 (111)
T 1ji8_A 53 WKLVKYLREYWETFGTCPPIKMVTKETGFSLEK-IYQLFPSGPA 95 (111)
T ss_dssp HHHHHHHHHHTTTTSCCCCSTTGGGGSCCCHHH-HHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHCCCCHH
T ss_conf 999999999999978997099999999889999-9998799899
No 8
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=13.48 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=29.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 87999999999-9999889999999874230344677354210045
Q 005534 13 MKLESACADLK-KILKASAKMEDKLGKIDKNFDTIEETISAASRSI 57 (692)
Q Consensus 13 ~~l~a~~~~L~-~~L~ks~~l~~~i~~~l~~l~~~~~~l~~~~~~i 57 (692)
..|.+.|.-|= +--.|=.+|+++|.. |+|..+.|+..+|++|
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~---riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIG---RIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999---9998985798997654
No 9
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=1.00 E-value=1 Score=13.35 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCC--CCCCCCCHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 89999999998601388--99766796779-----99997741899988875567898889970
Q 005534 623 FLIPAYTEFLNSNSTLV--QAKSYVSPESI-----EGLLGQIFDGADRKLKRRDSKDPKTGGGI 679 (692)
Q Consensus 623 ~ViPaY~~F~~ry~~~~--~~~kyytpe~L-----e~~L~~LF~g~~~~~~~~~~~~~~~~~~~ 679 (692)
.||-..|.||.+|+.+. ..-.++....+ ...|-+||-+.+.+..-|=+--|+-.|-+
T Consensus 52 ~VI~flR~~Y~e~~~~P~iR~l~K~~~~~~g~~k~s~yLy~LFP~GPak~a~kiAGLPKP~~C~ 115 (115)
T 1sau_A 52 KIIRYLRDYFIKYGVAPPVRMLVKHCKKEVRPDCNLQYIYKLFPQGPAKDACRIAGLPKPTGCV 115 (115)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHHHHTCTTCCHHHHHHHSTTHHHHTHHHHTTCSCCTTCC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999997899819999999977707633589999987998899999980699998989
No 10
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=1.00 E-value=1 Score=13.30 Aligned_cols=99 Identities=10% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCH
Q ss_conf 94333321007887999999999999988999999987423034467735421004553102205689998868874203
Q 005534 1 MALAVAEEDSTLMKLESACADLKKILKASAKMEDKLGKIDKNFDTIEETISAASRSIAPLHSLAMTTKALETRINRAVSP 80 (692)
Q Consensus 1 ~~~~~~~~~~~~~~l~a~~~~L~~~L~ks~~l~~~i~~~l~~l~~~~~~l~~~~~~i~Pi~~~t~~L~~~~~nI~~~l~~ 80 (692)
|...+.+.-+.+.-+...+..|...|. .++..|+.|-.+.--...=-..+.|....+.+
T Consensus 15 ~~~~~~~~~s~~~~Lk~hRe~LV~rl~-------~v~~LLD~LL~~gvLs~EE~EiV~~~~T~~dK-------------- 73 (144)
T 4e9m_A 15 MEIIPSESHPHIQLLKSNRELLVTHIR-------NTQCLVDNLLKNDYFSAEDAEIVCACPTQPDK-------------- 73 (144)
T ss_dssp -----CCCCHHHHHHHHTHHHHHHHCC-------CCHHHHHHHHHTTSSCHHHHHHHHTSSSHHHH--------------
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHH--------------
T ss_conf 135887883588999998999999972-------11899999997699779998888516981899--------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 998886678658887999643200001228189666189899999999999998640795023456788
Q 005534 81 ALALVDSFKLAESLQHRLLQLSSRASSLRDSQKRLKLLLKYVDCVDQLNATLNTINQDGEPVIHKLQEV 149 (692)
Q Consensus 81 i~~v~~~~d~~~~~E~~i~~~~~~~~~~~gp~~d~~~l~~Yl~av~~L~~al~~l~~~~~~~~~~l~~~ 149 (692)
++.+=....+ +|+.. ..-++.++.++.+|.-+|+ +||.|+
T Consensus 74 ----------aRrLLDlV~s--------KGe~a----~e~Ll~~Lqql~day~dl~-------pwl~ei 113 (144)
T 4e9m_A 74 ----------VRKILDLVQS--------KGEEV----SEFFLYLLQQLADAYVDLR-------PWLLEI 113 (144)
T ss_dssp ----------HHHHHHHHHH--------HCHHH----HHHHHHHHHHHHHHSGGGH-------HHHHHT
T ss_pred ----------HHHHHHHHHH--------HHHHH----HHHHHHHHHHCCCCCCCHH-------HHHHHH
T ss_conf ----------9999999998--------56999----9999999997445543132-------789984
Done!