Query 005535
Match_columns 692
No_of_seqs 135 out of 229
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 18:43:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005535.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2041-2045//hhsearch_pdb/005535hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r17_C Vacuolar protein sortin 1.0 1 1 524.9 16.7 212 477-690 1-220 (298)
2 1bl1_A Parathyroid hormone rec 1.0 1 1 17.4 0.8 12 101-112 16-27 (31)
3 3zth_A STU0660; DNA binding, c 1.0 1 1 15.6 2.2 119 239-358 83-229 (350)
4 3m0z_A Putative aldolase; MCSG 1.0 1 1 15.0 -4.5 20 442-461 228-247 (249)
5 1uhw_A Pleckstrin; three-helix 1.0 1 1 14.8 -5.7 12 185-196 7-18 (109)
6 1o9i_A Pseudocatalase; oxidore 1.0 1 1 14.7 4.9 20 57-76 52-72 (266)
7 3m6y_A 4-hydroxy-2-oxoglutarat 1.0 1 1 14.5 -4.3 22 441-462 250-271 (275)
8 2zrr_A Mundticin KS immunity p 1.0 1 1 13.5 2.9 52 97-149 10-65 (118)
9 2c7p_A Modification methylase 1.0 1 1 13.2 1.4 41 263-303 282-323 (327)
10 2h21_A Ribulose-1,5 bisphospha 1.0 1 1 13.1 -1.1 46 124-178 393-439 (440)
No 1
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=524.88 Aligned_cols=212 Identities=43% Similarity=0.688 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 58999999999986414999999999999999998627996445335088999999999830899999898788883589
Q 005535 477 DFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKV 556 (692)
Q Consensus 477 e~~~eq~li~r~ihli~~~D~e~q~~~l~~~R~~f~~g~~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~~kk~ 556 (692)
||.+||++|||+||+++++|+++||++|..+|++|++||++|++||+|||||++++|+++++..+..+..|. ..++++
T Consensus 1 ef~eeQ~~varliHli~~~d~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~r~~~~~~~~d~~~~--~~~~ki 78 (298)
T 2r17_C 1 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWE--KKCQKI 78 (298)
T ss_dssp CTTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHTTTTTCSSHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCHHHHH--HHHHHH
T ss_conf 928899999999999708988999999999999988089531100122899999999999875134014678--889999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999851999978889999999998400798---10799999999896120013719999999999999981127
Q 005535 557 FQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDL---EPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHV 633 (692)
Q Consensus 557 f~fv~~~i~~l~~~~~~~~~lkLyL~~a~~Ad~~~~---~~iayeFf~qAf~iyEe~i~ds~~Q~~~l~~ii~tL~~~~~ 633 (692)
|+|+|++|+.|.....|+++|||||+||++||++++ +++|||||+|||+||||+|+||++|++||.+|||||+++|+
T Consensus 79 f~fv~~~i~~L~~~~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~ 158 (298)
T 2r17_C 79 FSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKC 158 (298)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999997536553888999999999987737662047999999999999875055669999999999999988037
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-----CCCCCCCCHHHHHHHHH
Q ss_conf 9956457899999989873049324689999965431778-----98876662378764411
Q 005535 634 FGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVD-----DQDNMKDGERFVIVHLF 690 (692)
Q Consensus 634 ~~~e~y~~L~tk~~~~askLLkK~dQcrav~~cshL~w~~-----~~~~~~d~krVleCLq~ 690 (692)
|++||||+|+||||+||||||||||||||||+||||||++ +.+.+||||||+||||.
T Consensus 159 f~~enye~L~tk~t~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqk 220 (298)
T 2r17_C 159 FSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKK 220 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 88756899999999999861686999999999999856787666520311365899999999
No 2
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=1.00 E-value=1 Score=17.43 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 246899999988
Q 005535 101 ILPRLYLLCTVG 112 (692)
Q Consensus 101 IiPRLYLlItVg 112 (692)
+-+|||+|-|||
T Consensus 16 ~FeRL~~iYTVG 27 (31)
T 1bl1_A 16 VFDRLGMIYTVG 27 (31)
T ss_dssp HHHSSHHHHHHH
T ss_pred HHHHEEEEEEEE
T ss_conf 776353678876
No 3
>3zth_A STU0660; DNA binding, crispr, CAS; 2.40A {Streptococcus thermophilus}
Probab=1.00 E-value=1 Score=15.59 Aligned_cols=119 Identities=15% Similarity=0.273 Sum_probs=73.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCCCCCH--HH----------HHHHHHHH-HHH
Q ss_conf 157899998404301125877574950796004886999995414-67988879--99----------99999999-987
Q 005535 239 LPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFP-QLQPSVDI--KT----------VLSRLMER-LSN 304 (692)
Q Consensus 239 LP~iLeqiv~C~D~~aQeYLld~IiQvFPdefHl~TL~~lL~~~~-~l~~~V~i--~~----------Il~~Li~R-L~~ 304 (692)
---++||+---|..+|++||.. +++-|--.-|+..+++-|..+. ..|..++. .. -+-.++.. |+.
T Consensus 83 ~~DiieQm~ykKgTll~~ylk~-~~~~fDI~~~le~INd~L~~I~~~~N~~Lnl~~~~Ieyh~e~~~~~~~qllqk~fsp 161 (350)
T 3zth_A 83 FKDLLEQMEYKKGTLAQGYLRK-IVNQVDIVGHLEKINEQVELIEEAMNRHINLNCGQVEYHLENLPLTLDQLLTKNFSP 161 (350)
T ss_dssp HHHHHHHTSCSTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHTTCCCEETTEECCCCCCCCCHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHCCCCCHHHHHHHHCCC
T ss_conf 8889999874404049999999-831278999999998999999999988973457857876412667899999871660
Q ss_pred HHHHCCCCCCH-HH-HHHHHHHHHHHHHHHHHHCCC------------CCHHHHHHHHHHHHHHHHHH
Q ss_conf 77111588861-32-079999999999999840699------------99555999999999987777
Q 005535 305 YAASSTEVLPE-FL-QVEAFSKLNNAIGKVIEAQAD------------MPILGAVTLYSSLLTFTLHV 358 (692)
Q Consensus 305 ~~~~~~~~~~~-~~-~~~lf~~f~~~i~~l~~~~~~------------~~~~~~i~l~~sll~l~l~~ 358 (692)
+..-++..++- +. -.+.|-.|-+.+.++.+.+|. ++-++|+.+.+.+-.++=+.
T Consensus 162 ~f~~~~knIs~E~vsn~ekl~~fL~mL~~~ls~~t~k~LLV~kNiD~~Ls~~sy~~i~~~~~~ls~k~ 229 (350)
T 3zth_A 162 FFAIENKNLSFEWVSNIDKLSLFLEMLDHLLSQTTEKYLIVLKNIDGFISEESYTIFYRQICHLVKKY 229 (350)
T ss_dssp CEEETTEEECGGGSCHHHHHHHHHHHHHHHHTTCCSCEEEEEESCGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHHHHHHHHHHHHC
T ss_conf 20537884672540659999999999999972698717999938778636888999999999998518
No 4
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=1.00 E-value=1 Score=15.02 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=8.7
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 96535799899999987888
Q 005535 442 NTQISTADKVGALFELIKGL 461 (692)
Q Consensus 442 ~~~i~~~~~v~~ll~~~~~L 461 (692)
.+--+.|+++..||..++-|
T Consensus 228 ~TG~TrpedV~~ll~~~K~l 247 (249)
T 3m0z_A 228 ASGNTRPADVRQLLEMTKQL 247 (249)
T ss_dssp TTCCBCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
T ss_conf 77998999999999999986
No 5
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=1.00 E-value=1 Score=14.80 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=8.1
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999997327
Q 005535 185 EMNKLWVRMQHQ 196 (692)
Q Consensus 185 EMNkLWVRlqhq 196 (692)
.|.+||.+||+.
T Consensus 7 ~l~~Lv~~Mqd~ 18 (109)
T 1uhw_A 7 GLGALYLSMKDP 18 (109)
T ss_dssp THHHHHHHHHCT
T ss_pred CHHHHHHHHHCC
T ss_conf 799999997588
No 6
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=1.00 E-value=1 Score=14.71 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=13.5
Q ss_pred CCHHHHHHHHH-HHHHHHHHH
Q ss_conf 73034778999-775898999
Q 005535 57 PQKYYQLYMRA-FDELRKLEM 76 (692)
Q Consensus 57 Pk~YYeLYm~V-~d~L~~L~~ 76 (692)
|+.|+.|.+-| ++||.|++.
T Consensus 52 ~~~y~dLL~dIatEEl~HlEm 72 (266)
T 1o9i_A 52 AEKYKDLLLDTGTEEMAHVEM 72 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHH
T ss_conf 187899999999986048999
No 7
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=1.00 E-value=1 Score=14.47 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=11.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4965357998999999878887
Q 005535 441 NNTQISTADKVGALFELIKGLI 462 (692)
Q Consensus 441 ~~~~i~~~~~v~~ll~~~~~L~ 462 (692)
..+--+.|+++..||..++-|+
T Consensus 250 k~TG~TrpedV~~ll~~~K~l~ 271 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKKLV 271 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7779989999999999999998
No 8
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=1.00 E-value=1 Score=13.51 Aligned_cols=52 Identities=12% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHCCHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Q ss_conf 732524689999998879872688--8678999999997711--1461689999999
Q 005535 97 HAGNILPRLYLLCTVGSVYIKSKE--APAKDVLKDLVEMCRG--IQHPVRGLFLRSY 149 (692)
Q Consensus 97 yagnIiPRLYLlItVg~~yi~~~~--~~~~eiLkDLvEMcRG--VQhPlRGLFLR~Y 149 (692)
|...+|||-|.|-++ +=|---++ ..|..|+.+|++=..+ =+.|++.++..|.
T Consensus 10 ~~~~~~~~~~~M~~L-KWFsGGkER~~~Ai~II~~Ll~~l~~~~~~~~Lk~vL~~Y~ 65 (118)
T 2zrr_A 10 HSSGLVPRGSHMSNL-KWFSGGDDRRKKAEVIITELLDDLEIDLGNESLRKVLGSYL 65 (118)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHHHCSCSSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCC-EECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 456767674415442-32118879999999999999997246875234999999999
No 9
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=1.00 E-value=1 Score=13.16 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHCCCCHHH-HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9507960048-8699999541467988879999999999998
Q 005535 263 IQVFPDEYHL-QTLEILLGAFPQLQPSVDIKTVLSRLMERLS 303 (692)
Q Consensus 263 iQvFPdefHl-~TL~~lL~~~~~l~~~V~i~~Il~~Li~RL~ 303 (692)
+|.|||+|.+ .+.......+++.-|-.-.+.|...+.+-|.
T Consensus 282 LQgFPd~f~f~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~~l~ 323 (327)
T 2c7p_A 282 VMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSLN 323 (327)
T ss_dssp HTTCCTTSCCCSSHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 778996808279989999370388889999999999999986
No 10
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=1.00 E-value=1 Score=13.07 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8999999997711146168999999998741113-899898878898775543999
Q 005535 124 KDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDK-LPDIGSEYEGDADTVNDAMEF 178 (692)
Q Consensus 124 ~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~-LPd~~~~~e~~~g~i~dsi~F 178 (692)
|.||+...+.|+..-.++.++ .||.-++.|++ |-|.. |++..+..|
T Consensus 393 K~iL~~~~~~~~~~~~~l~~~--~~~~~r~l~~~~~~~~~-------~~~~~~~~~ 439 (440)
T 2h21_A 393 KMVLQQIDGIFEQKELELDQL--EYYQERRLKDLGLCGEN-------GDILENLYF 439 (440)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS--CCHHHHHHTTCCCSSCC-------HHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCC-------CCCCCCCCC
T ss_conf 999999999999999885012--68888612667877988-------873568556
Done!