Query 005536
Match_columns 692
No_of_seqs 510 out of 3789
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 18:58:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005536.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2041-2045//hhsearch_pdb/005536hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 413.3 17.9 260 324-605 41-321 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 410.5 13.0 260 324-605 13-291 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 405.9 15.4 256 325-602 27-305 (308)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 402.5 18.5 265 319-604 31-301 (307)
5 4b9d_A Serine/threonine-protei 1.0 1 1 392.4 14.9 250 324-596 24-276 (350)
6 4ase_A Vascular endothelial gr 1.0 1 1 391.6 17.6 270 314-604 54-348 (353)
7 3hmm_A TGF-beta receptor type- 1.0 1 1 391.3 15.3 270 324-604 3-298 (303)
8 4fih_A Serine/threonine-protei 1.0 1 1 382.2 21.6 256 323-609 73-329 (346)
9 4fie_A Serine/threonine-protei 1.0 1 1 380.0 24.5 257 322-609 149-406 (423)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 377.5 16.2 266 323-614 31-301 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=413.30 Aligned_cols=260 Identities=25% Similarity=0.379 Sum_probs=218.2
Q ss_pred CCCCCCEEECCCCCEEEEEEEEE------CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEE
Q ss_conf 36755405311461999999991------898999999122893008999999999981899970016799984890089
Q 005536 324 SFFSEKHRLGTGAYGTVYAGKLH------NDDWVAIKRFRYRDTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPIL 397 (692)
Q Consensus 324 ~~f~~~~~LG~G~~g~Vykg~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~l 397 (692)
++|...++||+|+||+||+|++. ++..||||+++..+....++|.+|++++++++|||||+++|+|.+.+..+|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHHHCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 997089998889974205-------------9999988899999999999999873389992853778996688399965
Q 005536 398 VYEFMPNGTLCQHLQRER-------------GSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRS 464 (692)
Q Consensus 398 V~E~~~~gsL~~~l~~~~-------------~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiHrDik~~NILld~~~~~ 464 (692)
||||+++|+|.++|+... ...++|..++.|+.|+|.||+|||+ ++|+||||||+||||++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEECCCCCHHHEEECCCCCE
T ss_conf 99827999399999860754100122112457889999999999999999999840---884226666764898899968
Q ss_pred EEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99421477458778-8753236779999999210012778984625423588999883-795457889954100799999
Q 005536 465 KVADFGLSRLGMTE-SSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIIT-ALKVVDFSRPHSEVNLAALAI 542 (692)
Q Consensus 465 ki~DFGla~~~~~~-~~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~Ellt-g~~p~~~~~~~~~~~l~~~~~ 542 (692)
||+|||+++..... .....+...||+.|||||++.+..++.++|||||||+||||+| |+.||..... ....
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~-------~~~~ 270 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN-------TEAI 270 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH-------HHHH
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCH-------HHHH
T ss_conf 976660333656787530047645565665826544799996630010578999998289999999899-------9999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 995158544134666886777339889999999999801469999999999999998422013
Q 005536 543 DRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSS 605 (692)
Q Consensus 543 ~~~~~~~~~ei~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~~ 605 (692)
..+.++...+. +...+..+.+|+.+||+.+|++||||.||++.|+.+...+
T Consensus 271 ~~i~~g~~~~~------------p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 271 DCITQGRELER------------PRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp HHHHHTCCCCC------------CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred HHHHCCCCCCC------------CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 99980898998------------6446399999999974759657929999999999874588
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=410.54 Aligned_cols=260 Identities=26% Similarity=0.403 Sum_probs=217.4
Q ss_pred CCCCCCEEECCCCCEEEEEEEEE------CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEE
Q ss_conf 36755405311461999999991------898999999122893008999999999981899970016799984890089
Q 005536 324 SFFSEKHRLGTGAYGTVYAGKLH------NDDWVAIKRFRYRDTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPIL 397 (692)
Q Consensus 324 ~~f~~~~~LG~G~~g~Vykg~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~l 397 (692)
++|...++||+|+||+||+|++. ++..||||+++..+....++|.+|++++++++|||||+++|+|.+.+..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHHCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 997089998889974205-----------999998889999999999999987338999285377899668839996599
Q 005536 398 VYEFMPNGTLCQHLQRER-----------GSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKV 466 (692)
Q Consensus 398 V~E~~~~gsL~~~l~~~~-----------~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiHrDik~~NILld~~~~~ki 466 (692)
||||+++|+|.++|+... ...++|..++.|+.|+|.||+|||+ ++|+||||||+||||+.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEE
T ss_conf 998589996899998608642111235777889999999999999999999975---99046765776389879986898
Q ss_pred EEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 4214774587788-753236779999999210012778984625423588999883-79545788995410079999999
Q 005536 467 ADFGLSRLGMTES-SHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIIT-ALKVVDFSRPHSEVNLAALAIDR 544 (692)
Q Consensus 467 ~DFGla~~~~~~~-~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~Ellt-g~~p~~~~~~~~~~~l~~~~~~~ 544 (692)
+|||+|+...... ........||+.|||||++.+..++.++|||||||+||||+| |+.||..... ......
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~-------~~~~~~ 242 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN-------NEVIEC 242 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-------HHHHHH
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH-------HHHHHH
T ss_conf 8730010067887416647513470103889870799970366778899999998089999999899-------999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5158544134666886777339889999999999801469999999999999998422013
Q 005536 545 IGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSS 605 (692)
Q Consensus 545 ~~~~~~~ei~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~~ 605 (692)
+.++...+. +...+..+.+|+.+||+.+|++||||.+|.+.|+++....
T Consensus 243 i~~~~~~~~------------p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 243 ITQGRVLQR------------PRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp HHHTCCCCC------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred HHCCCCCCC------------CCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 980898899------------7414399999999976879668929999999998777639
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=405.94 Aligned_cols=256 Identities=22% Similarity=0.309 Sum_probs=211.4
Q ss_pred CCCCCEEECCCCCEEEEEEEEE------CCCEEEEEEEECCC-CHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEE
Q ss_conf 6755405311461999999991------89899999912289-3008999999999981899970016799984890089
Q 005536 325 FFSEKHRLGTGAYGTVYAGKLH------NDDWVAIKRFRYRD-TDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPIL 397 (692)
Q Consensus 325 ~f~~~~~LG~G~~g~Vykg~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~l 397 (692)
.+...++||+|+||+||+|++. +++.||||+++... ....++|.+|+.++++++|||||+++|+|.+.+..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHHHCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 997089998889974205--------------999998889999999999999987338999285377899668839996
Q 005536 398 VYEFMPNGTLCQHLQRER--------------GSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYR 463 (692)
Q Consensus 398 V~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiHrDik~~NILld~~~~ 463 (692)
||||+++|+|.++|+... ...++|..+++|+.|+|.||+|||+ ++|+||||||+||||++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCEEECCCCC
T ss_conf 998189994999998627654333322111124689999999999999999999986---89977873623068879997
Q ss_pred EEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHH
Q ss_conf 599421477458778-8753236779999999210012778984625423588999883-79545788995410079999
Q 005536 464 SKVADFGLSRLGMTE-SSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIIT-ALKVVDFSRPHSEVNLAALA 541 (692)
Q Consensus 464 ~ki~DFGla~~~~~~-~~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~Ellt-g~~p~~~~~~~~~~~l~~~~ 541 (692)
+||+|||+++..... .....+...||+.|||||++.+..++.++|||||||+||||+| |+.||..... ...
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~-------~~~ 256 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-------QDV 256 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH-------HHH
T ss_pred EEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH-------HHH
T ss_conf 8988760202336777404734512577656989982799996300015799999999689999999899-------999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9995158544134666886777339889999999999801469999999999999998422
Q 005536 542 IDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIR 602 (692)
Q Consensus 542 ~~~~~~~~~~ei~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~ 602 (692)
...+..+..... +...+..+.+|+.+||+.+|++||||.||++.|+.+.
T Consensus 257 ~~~i~~~~~~~~------------p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 257 VEMIRNRQVLPC------------PDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp HHHHHTTCCCCC------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred HHHHHCCCCCCC------------CCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf 999981998999------------6203699999999975879657929999999998531
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=402.51 Aligned_cols=265 Identities=29% Similarity=0.442 Sum_probs=212.4
Q ss_pred HHHHHCCCCCCEEECCCCCEEEEEEEEECCCEEEEEEEECC--CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEE
Q ss_conf 98751367554053114619999999918989999991228--9300899999999998189997001679998489008
Q 005536 319 IEKATSFFSEKHRLGTGAYGTVYAGKLHNDDWVAIKRFRYR--DTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPI 396 (692)
Q Consensus 319 l~~~t~~f~~~~~LG~G~~g~Vykg~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~ 396 (692)
+|...+++...++||+|+||+||+|++. ..||||.++.. +....+.|.+|+.++++++|||||+++|++.+ +..+
T Consensus 31 Wei~~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~ 107 (307)
T 3omv_A 31 WEIEASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLA 107 (307)
T ss_dssp CBCCTTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCE
T ss_pred CEECHHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEE
T ss_conf 0874799498449820888689999989--968999997268999999999999999985899887469999978-9589
Q ss_pred EEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCC
Q ss_conf 99970899988899742059999988899999999999999873389992853778996688399965994214774587
Q 005536 397 LVYEFMPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGM 476 (692)
Q Consensus 397 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiHrDik~~NILld~~~~~ki~DFGla~~~~ 476 (692)
|||||+++|+|.++|+... ..++|..++.|+.|+|.||+|||+ ++|+||||||+||||++++.+||+|||+|+...
T Consensus 108 iVmEy~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~ 183 (307)
T 3omv_A 108 IVTQWCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKS 183 (307)
T ss_dssp EEEECCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC--
T ss_pred EEEECCCCCCHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECC
T ss_conf 9997489987889875248-999999999999999999999977---995278557899788899908994415754246
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 78-8753236779999999210012---7789846254235889998837954578899541007999999951585441
Q 005536 477 TE-SSHISTAPQGTPGYLDPQYHQY---FHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDE 552 (692)
Q Consensus 477 ~~-~~~~~~~~~gt~~Y~aPE~~~~---~~~s~ksDVySfGviL~Elltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~e 552 (692)
.. .........||+.|||||++.+ .+|+.++|||||||+||||+||+.||....... .....+.++..
T Consensus 184 ~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~------~~~~~~~~~~~-- 255 (307)
T 3omv_A 184 RWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD------QIIFMVGRGYA-- 255 (307)
T ss_dssp ----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH------HHHHHHHTTCC--
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHHCCCC--
T ss_conf 6776403156446877249878614689987868775728999999997889989999699------99999965888--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 3466688677733988999999999980146999999999999999842201
Q 005536 553 IIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 604 (692)
Q Consensus 553 i~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~ 604 (692)
.|.+. ......+..+.+|+.+||+.+|++||||.||++.|+.++..
T Consensus 256 --~p~~~----~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~ 301 (307)
T 3omv_A 256 --SPDLS----KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS 301 (307)
T ss_dssp --CCCST----TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred --CCCCC----CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCC
T ss_conf --88720----03544569999999997577976890989999999997450
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=392.41 Aligned_cols=250 Identities=22% Similarity=0.363 Sum_probs=209.5
Q ss_pred CCCCCCEEECCCCCEEEEEEEEE-CCCEEEEEEEECC--CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 36755405311461999999991-8989999991228--93008999999999981899970016799984890089997
Q 005536 324 SFFSEKHRLGTGAYGTVYAGKLH-NDDWVAIKRFRYR--DTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPILVYE 400 (692)
Q Consensus 324 ~~f~~~~~LG~G~~g~Vykg~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~lV~E 400 (692)
++|...++||+|+||+||+++.. +++.||||++... +....+.+.+|+.++++++|||||++++++.+.+..+||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 08999888997420599999888999999999999998733899928537789966883999659942147745877887
Q 005536 401 FMPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESS 480 (692)
Q Consensus 401 ~~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiHrDik~~NILld~~~~~ki~DFGla~~~~~~~~ 480 (692)
|+++|+|.++|...+...+++...+.|+.|++.||+|||+ ++|+||||||+||||+.++.+||+|||+|+.... ..
T Consensus 104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~-~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS-TV 179 (350)
T ss_dssp CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCH-HH
T ss_pred CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCCCHHHEEECCCCCEEECCCCCCEEECC-CC
T ss_conf 8899839999997389999789999999999999999998---9915135978997987899989764652144068-85
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 53236779999999210012778984625423588999883795457889954100799999995158544134666886
Q 005536 481 HISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEP 560 (692)
Q Consensus 481 ~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~Elltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ei~d~~l~~ 560 (692)
...+...||+.|||||++.+..|+.++|||||||+||||++|+.||..... .....++..+....+
T Consensus 180 ~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-------~~~~~~i~~~~~~~~------- 245 (350)
T 4b9d_A 180 ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM-------KNLVLKIISGSFPPV------- 245 (350)
T ss_dssp HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-------HHHHHHHHHTCCCCC-------
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHCCCCCCC-------
T ss_conf 410145788360399998799989599999999999999978799899699-------999999980899999-------
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 777339889999999999801469999999999999
Q 005536 561 HRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAE 596 (692)
Q Consensus 561 ~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~ 596 (692)
+......+.+|+.+||+.||++|||+.|+++
T Consensus 246 -----~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 246 -----SLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp -----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -----CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf -----7557999999999985589667908999963
No 6
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=391.65 Aligned_cols=270 Identities=24% Similarity=0.322 Sum_probs=220.2
Q ss_pred CCHHHHHHHHCCCCCCEEECCCCCEEEEEEEEECC------CEEEEEEEECCC-CHHHHHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 89688987513675540531146199999999189------899999912289-3008999999999981899-970016
Q 005536 314 YPYKEIEKATSFFSEKHRLGTGAYGTVYAGKLHND------DWVAIKRFRYRD-TDSIDQVMNEIKLLSSVSH-PNLLRL 385 (692)
Q Consensus 314 ~~~~el~~~t~~f~~~~~LG~G~~g~Vykg~~~~~------~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h-~niv~l 385 (692)
+...++|...++|...+.||+|+||+||+|++... +.||||+++... ....+.|.+|+.++.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CEEEEEEEECCCCCHHHHHHHCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 7999848-90089997089998889974205--------------99999888999999999999998733899928537
Q 005536 386 LGCCIEE-GEPILVYEFMPNGTLCQHLQRER--------------GSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRD 450 (692)
Q Consensus 386 ~g~~~~~-~~~~lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiHrD 450 (692)
+|+|.+. +..++||||+++|+|.++|+... ...++|..++.|+.|+|.||+|||+ ++|+|||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCC
T ss_conf 8999946977999998389897999997435666543334101103568999999999999999876762---7843574
Q ss_pred CCCCCEEECCCCCEEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCC
Q ss_conf 7899668839996599421477458778875-3236779999999210012778984625423588999883-7954578
Q 005536 451 IKSSNILLDYNYRSKVADFGLSRLGMTESSH-ISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIIT-ALKVVDF 528 (692)
Q Consensus 451 ik~~NILld~~~~~ki~DFGla~~~~~~~~~-~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~Ellt-g~~p~~~ 528 (692)
|||+|||+++++.+||+|||+|+....+... ......||+.|||||++.+..++.++|||||||+||||+| |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8995410079999999515854413466688677733988999999999980146999999999999999842201
Q 005536 529 SRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 604 (692)
Q Consensus 529 ~~~~~~~~l~~~~~~~~~~~~~~ei~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~ 604 (692)
..... .+...+.++..... +.....++.+++.+||+.+|++||||.+|++.|+.+...
T Consensus 291 ~~~~~------~~~~~i~~g~~~~~------------p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 291 VKIDE------EFCRRLKEGTRMRA------------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp CCCSH------HHHHHHHHTCCCCC------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCHHH------HHHHHHHCCCCCCC------------CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 89899------99999973898888------------865789999999997686966793999999999999987
No 7
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=391.30 Aligned_cols=270 Identities=22% Similarity=0.315 Sum_probs=205.2
Q ss_pred CCCCCCEEECCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC----EEEEEE
Q ss_conf 3675540531146199999999189899999912289300899999999998189997001679998489----008999
Q 005536 324 SFFSEKHRLGTGAYGTVYAGKLHNDDWVAIKRFRYRDTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEG----EPILVY 399 (692)
Q Consensus 324 ~~f~~~~~LG~G~~g~Vykg~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~----~~~lV~ 399 (692)
+++...++||+|+||+||+|++ +++.||||++.... .....+..|+..+.+++|||||+++|++.+.+ ..+|||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEE-CCEEEEEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 5899978984089939999999-99899999988313-366999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCEEECCCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf 7089998889974205999998889999999999999987338-----99928537789966883999659942147745
Q 005536 400 EFMPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSAM-----NPPIYHRDIKSSNILLDYNYRSKVADFGLSRL 474 (692)
Q Consensus 400 E~~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~~-----~~~iiHrDik~~NILld~~~~~ki~DFGla~~ 474 (692)
||+++|+|.++|+.. .++|..+++|+.|+|.||+|||+.. .++|+||||||+|||||.++.+||+|||+|+.
T Consensus 81 Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp ECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred CCCCCCCHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCC
T ss_conf 178999689999757---99989999999999999999998524004789876246784208998899789984798745
Q ss_pred CCCCCCC---CCCCCCCCCCCCCCCCCCCC------CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCC----CCCC----H
Q ss_conf 8778875---32367799999992100127------7898462542358899988379545788995----4100----7
Q 005536 475 GMTESSH---ISTAPQGTPGYLDPQYHQYF------HLSDKSDVYSFGVVLIEIITALKVVDFSRPH----SEVN----L 537 (692)
Q Consensus 475 ~~~~~~~---~~~~~~gt~~Y~aPE~~~~~------~~s~ksDVySfGviL~Elltg~~p~~~~~~~----~~~~----l 537 (692)
....... ......||+.|||||++.+. .++.++||||||++||||+||+.|+...... .... .
T Consensus 158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~ 237 (303)
T 3hmm_A 158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS 237 (303)
T ss_dssp EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred CCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCH
T ss_conf 56777732210464246646269888456545567765706766647999999987899877665223531002545430
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9999999515854413466688677733988999999999980146999999999999999842201
Q 005536 538 AALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 604 (692)
Q Consensus 538 ~~~~~~~~~~~~~~ei~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~ 604 (692)
.......+.. +..+|.+.. .....+....+.+|+.+||+.||++||||.||++.|+++...
T Consensus 238 ~~~~~~~~~~----~~~rp~~p~--~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 238 VEEMRKVVCE----QKLRPNIPN--RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHHHTT----SCCCCCCCG--GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHC----CCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999998750----257998876--556658999999999997605975795999999999988987
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=382.24 Aligned_cols=256 Identities=22% Similarity=0.332 Sum_probs=211.7
Q ss_pred HCCCCCCEEECCCCCEEEEEEEEE-CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf 136755405311461999999991-8989999991228930089999999999818999700167999848900899970
Q 005536 323 TSFFSEKHRLGTGAYGTVYAGKLH-NDDWVAIKRFRYRDTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPILVYEF 401 (692)
Q Consensus 323 t~~f~~~~~LG~G~~g~Vykg~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~lV~E~ 401 (692)
.+.|...++||+|+||+||+++.. +++.||||++...+....+.+.+|+.++++++|||||++++++.+.+..+|||||
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 152 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 152 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 57538707960272829999999899989999998527656899999999999867998999199999989999999969
Q ss_pred CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 89998889974205999998889999999999999987338999285377899668839996599421477458778875
Q 005536 402 MPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSH 481 (692)
Q Consensus 402 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiHrDik~~NILld~~~~~ki~DFGla~~~~~~~~~ 481 (692)
+++|+|.+++... .+++..+..++.|++.||+|||+ ++|+||||||+||||+.++.+||+|||+|+..... ..
T Consensus 153 ~~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-~~ 225 (346)
T 4fih_A 153 LEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-VP 225 (346)
T ss_dssp CTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSS-SC
T ss_pred CCCCCHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC-CC
T ss_conf 8998089998718---98999999999999999999998---88355627889978879998899027575366788-77
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 32367799999992100127789846254235889998837954578899541007999999951585441346668867
Q 005536 482 ISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPH 561 (692)
Q Consensus 482 ~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~Elltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ei~d~~l~~~ 561 (692)
......||+.|||||++.+..|+.++|||||||+||||++|+.||....+. .....+..+.... +.
T Consensus 226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~-------~~~~~i~~~~~~~-----~~-- 291 (346)
T 4fih_A 226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL-------KAMKMIRDNLPPR-----LK-- 291 (346)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-------HHHHHHHHSSCCC-----CS--
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH-------HHHHHHHCCCCCC-----CC--
T ss_conf 534656275827999977999996899999999999999787998985999-------9999997179998-----87--
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 773398899999999998014699999999999999984220133345
Q 005536 562 RDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASN 609 (692)
Q Consensus 562 ~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~~~~~~ 609 (692)
........+.+|+.+||+.||++|||+.|++ .++|...
T Consensus 292 ---~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l-------~Hp~~~~ 329 (346)
T 4fih_A 292 ---NLHKVSPSLKGFLDRLLVRDPAQRATAAELL-------KHPFLAK 329 (346)
T ss_dssp ---CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHT-------TCGGGGG
T ss_pred ---CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHH-------CCHHHCC
T ss_conf ---5022999999999998679956890999996-------0986568
No 9
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=380.03 Aligned_cols=257 Identities=22% Similarity=0.337 Sum_probs=212.4
Q ss_pred HHCCCCCCEEECCCCCEEEEEEEEE-CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 5136755405311461999999991-898999999122893008999999999981899970016799984890089997
Q 005536 322 ATSFFSEKHRLGTGAYGTVYAGKLH-NDDWVAIKRFRYRDTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPILVYE 400 (692)
Q Consensus 322 ~t~~f~~~~~LG~G~~g~Vykg~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~lV~E 400 (692)
..+.|...++||+|+||.||+++.. +++.||||++........+.+.+|+.+|++++|||||++++++.+.+..+||||
T Consensus 149 p~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE 228 (423)
T 4fie_A 149 PRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME 228 (423)
T ss_dssp GGGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 26843861696248184899999999998999999862554689999999999985799898716899998999999996
Q ss_pred ECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 08999888997420599999888999999999999998733899928537789966883999659942147745877887
Q 005536 401 FMPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESS 480 (692)
Q Consensus 401 ~~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiHrDik~~NILld~~~~~ki~DFGla~~~~~~~~ 480 (692)
|+++|+|.+++... .+++..+..|+.|++.||+|||+ ++|+||||||+||||+.++.+||+|||+|+..... .
T Consensus 229 y~~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~-~ 301 (423)
T 4fie_A 229 FLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-V 301 (423)
T ss_dssp CCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSS-C
T ss_pred CCCCCCHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEECCCCCEEEECCCCCEECCCC-C
T ss_conf 98998289887616---98999999999999999999998---89044657877789858999898037265477788-7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 53236779999999210012778984625423588999883795457889954100799999995158544134666886
Q 005536 481 HISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEP 560 (692)
Q Consensus 481 ~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~Elltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ei~d~~l~~ 560 (692)
.......||+.|||||++.+..|+.++|||||||+||||++|+.||....+. .....+..+.... +.
T Consensus 302 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~-------~~~~~i~~~~~~~-----~~- 368 (423)
T 4fie_A 302 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL-------KAMKMIRDNLPPR-----LK- 368 (423)
T ss_dssp CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-------HHHHHHHHSCCCC-----CS-
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH-------HHHHHHHCCCCCC-----CC-
T ss_conf 6434666474727999977999996899999999999999787998986999-------9999997279988-----76-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 7773398899999999998014699999999999999984220133345
Q 005536 561 HRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASN 609 (692)
Q Consensus 561 ~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~~~~~~ 609 (692)
. .......+.+|+.+||+.||++|||+.|++ .++|...
T Consensus 369 ~----~~~~s~~~~dli~~~L~~dP~~R~ta~ell-------~Hp~~~~ 406 (423)
T 4fie_A 369 N----LHKVSPSLKGFLDRLLVRDPAQRATAAELL-------KHPFLAK 406 (423)
T ss_dssp C----TTSSCHHHHHHHHHHSCSSTTTSCCHHHHT-------TCGGGGG
T ss_pred C----CCCCCHHHHHHHHHHCCCCHHHCCCHHHHH-------CCHHHCC
T ss_conf 5----012999999999998678956890999996-------0987568
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=377.45 Aligned_cols=266 Identities=20% Similarity=0.300 Sum_probs=218.9
Q ss_pred HCCCCCCEEECCCCCEEEEEEEEE-CCCEEEEEEEECC---CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEE
Q ss_conf 136755405311461999999991-8989999991228---930089999999999818999700167999848900899
Q 005536 323 TSFFSEKHRLGTGAYGTVYAGKLH-NDDWVAIKRFRYR---DTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPILV 398 (692)
Q Consensus 323 t~~f~~~~~LG~G~~g~Vykg~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~lV 398 (692)
.++|...+.||+|+||+||+++.. +++.||+|.+... +....+.+.+|++++++++|||||++++++.+.+..++|
T Consensus 31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv 110 (311)
T 4aw0_A 31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG 110 (311)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE
T ss_conf 52368988983164849999999999989999998888877978999999999999867998989199999738989999
Q ss_pred EEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 97089998889974205999998889999999999999987338999285377899668839996599421477458778
Q 005536 399 YEFMPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTE 478 (692)
Q Consensus 399 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiHrDik~~NILld~~~~~ki~DFGla~~~~~~ 478 (692)
|||+++|+|.+++... ..+++.....++.|++.||+|||+ ++|+||||||+|||++.++.+||+|||+|+.....
T Consensus 111 mEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 111 LSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp ECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 9648998999999874--999999999999999999999998---87826878789969858988899876875025778
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8-753236779999999210012778984625423588999883795457889954100799999995158544134666
Q 005536 479 S-SHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPY 557 (692)
Q Consensus 479 ~-~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~Elltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ei~d~~ 557 (692)
. ........||+.|||||++.+..|+.++||||+||+||||++|+.||..... .....++.++... +
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-------~~~~~~i~~~~~~-~---- 253 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE-------GLIFAKIIKLEYD-F---- 253 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHTCCC-C----
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHCCCCC-C----
T ss_conf 776543675568030799897689999689899899999999749899899799-------9999999719999-9----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 886777339889999999999801469999999999999998422013334533589
Q 005536 558 LEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASNIYMGS 614 (692)
Q Consensus 558 l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~~~~~~~~~~s 614 (692)
+.....++.+|+.+||+.||.+|||+.|++. ...|+.++|..++.|..
T Consensus 254 --------p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~-~~~i~~Hp~F~~idw~~ 301 (311)
T 4aw0_A 254 --------PEKFFPKARDLVEKLLVLDATKRLGCEEMEG-YGPLKAHPFFESVTWEN 301 (311)
T ss_dssp --------CTTCCHHHHHHHHHHSCSSGGGSTTSGGGTC-HHHHHTSGGGTTCCCTT
T ss_pred --------CCCCCHHHHHHHHHHCCCCHHHCCCHHHHCC-CHHHHCCCCCCCCCHHH
T ss_conf --------9656999999999976289757809679758-77987798758989899
Done!