BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005537
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W4S|A Chain A, Crystal Structure Of The Proximal Bah Domain Of Polybromo
Length = 174
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 165 VHDFVYV-LAEEN-KRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFF 222
V D+VYV AE N + I +E ++EDS G K + WF++ +E F ++E+F
Sbjct: 29 VGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFK 88
Query: 223 SLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDV 272
S + + I G V+ + + K +C + F ++DV
Sbjct: 89 SDYYNKVPVSKILGKCVVMFVKEYFK-------------LCPENFRDEDV 125
>pdb|1ERM|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In Complex
With A Designed Boronic Acid Inhibitor
(1r)-1-Acetamido-2-(3-Carboxyphenyl) Ethane Boronic Acid
Length = 263
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEAXKVAGPLLRSALPAGWFIADK 209
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 148 KKRKHYQSFCRNGVKVSVHDFVYVLAEENKR-LIAYLEDMYEDSRGNKMVVVRWFHKIDE 206
K R HY+S + V + D VYV A EN+ I + + +E + RWF + ++
Sbjct: 43 KARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAED 102
Query: 207 VGI-------FLPHNFNDREIFFSLCLQDLSIECI 234
I H + R +F S D ++CI
Sbjct: 103 TVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCI 137
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 148 KKRKHYQSFCRNGVKVSVHDFVYVLAEENKR-LIAYLEDMYEDSRGNKMVVVRWFHKIDE 206
K R HY+S + V + D VYV A EN+ I + + +E + RWF + ++
Sbjct: 43 KARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAED 102
Query: 207 VGI-------FLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQL 258
I H + R +F S D ++CI ++ H + M+ QL
Sbjct: 103 TVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIV---HVDPNMDPKAKAQL 158
>pdb|1CK3|A Chain A, N276d Mutant Of Escherichia Coli Tem-1 Beta-Lactamase
Length = 263
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1JWV|A Chain A, Crystal Structure Of G238a Mutant Of Tem-1 Beta-Lactamase
In Complex With A Boronic Acid Inhibitor (Sefb4)
Length = 263
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1ESU|A Chain A, S235a Mutant Of Tem1 Beta-Lactamase
Length = 263
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1JVJ|A Chain A, Crystal Structure Of N132a Mutant Of Tem-1 Beta-Lactamase
In Complex With A N-Formimidoyl-Thienamycine
Length = 263
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1LHY|A Chain A, Crystal Structure Of Tem-30 Beta-lactamase At 2.0 Angstrom
Length = 263
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|2V1Z|A Chain A, Structure Of A Tem-1 Beta-Lactamase Insertant
Allosterically Regulated By Kanamycin And Anions.
pdb|2V20|A Chain A, Structure Of A Tem-1 Beta-Lactamase Insertant
Allosterically Regulated By Kanamycin And Anions.
Complex With Sulfate
Length = 291
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 174 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 214
>pdb|1JWZ|A Chain A, Crystal Structure Of Tem-64 Beta-Lactamase In Complex With
A Boronic Acid Inhibitor (105)
Length = 263
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1XXM|A Chain A, The Modular Architecture Of Protein-Protein Binding Site
pdb|1XXM|B Chain B, The Modular Architecture Of Protein-Protein Binding Site
Length = 263
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1LI9|A Chain A, Crystal Structure Of Tem-34 Beta-lactamase At 1.5 Angstrom
Length = 263
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1HTZ|A Chain A, Crystal Structure Of Tem52 Beta-Lactamase
pdb|1HTZ|B Chain B, Crystal Structure Of Tem52 Beta-Lactamase
pdb|1HTZ|C Chain C, Crystal Structure Of Tem52 Beta-Lactamase
pdb|1HTZ|D Chain D, Crystal Structure Of Tem52 Beta-Lactamase
pdb|1HTZ|E Chain E, Crystal Structure Of Tem52 Beta-Lactamase
pdb|1HTZ|F Chain F, Crystal Structure Of Tem52 Beta-Lactamase
Length = 263
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1JTD|A Chain A, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 263
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|2B5R|A Chain A, 1b Lactamase B LACTAMASE INHIBITOR
pdb|2B5R|B Chain B, 1b Lactamase B LACTAMASE INHIBITOR
Length = 263
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1JWP|A Chain A, Structure Of M182t Mutant Of Tem-1 Beta-Lactamase
pdb|1M40|A Chain A, Ultra High Resolution Crystal Structure Of Tem-1
pdb|1NXY|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
Tem-1 And A Boronic Acid Inhibitor (Sm2)
pdb|1NY0|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
Tem-1 And A Boronic Acid Inhibitor (Nbf)
pdb|1NYM|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
Tem-1 And A Boronic Acid Inhibitor (Cxb)
pdb|1NYY|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
Tem-1 And A Boronic Acid Inhibitor (105)
pdb|1PZO|A Chain A, Tem-1 Beta-lactamase In Complex With A Novel, Core-
Disrupting, Allosteric Inhibitor
Length = 263
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|3GMW|A Chain A, Crystal Structure Of Beta-Lactamse Inhibitory Protein-I
(Blip-I) In Complex With Tem-1 Beta-Lactamase
pdb|3GMW|C Chain C, Crystal Structure Of Beta-Lactamse Inhibitory Protein-I
(Blip-I) In Complex With Tem-1 Beta-Lactamase
Length = 261
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 167 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 207
>pdb|1ERO|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In Complex
With A Designed Boronic Acid Inhibitor (1r)-2-
Phenylacetamido-2-(3-Carboxyphenyl)ethyl Boronic Acid
pdb|1ERQ|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In Complex
With A Designed Boronic Acid Inhibitor
(1r)-1-Acetamido-2- (3-Carboxy-2-Hydroxyphenyl)ethyl
Boronic Acid
pdb|1S0W|A Chain A, 1b Lactamse B LACTAMASE INHIBITOR
pdb|1S0W|B Chain B, 1b Lactamse B LACTAMASE INHIBITOR
pdb|1XPB|A Chain A, Structure Of Beta-Lactamase Tem1
pdb|4GKU|A Chain A, Crystal Structure Of Beta Lactamase In Pet-15b
Length = 263
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1BT5|A Chain A, Crystal Structure Of The Imipenem Inhibited Tem-1
Beta-Lactamase From Escherichia Coli
pdb|1JTG|A Chain A, Crystal Structure Of Tem-1 Beta-lactamase / Beta-lactamase
Inhibitor Protein Complex
pdb|1JTG|C Chain C, Crystal Structure Of Tem-1 Beta-lactamase / Beta-lactamase
Inhibitor Protein Complex
pdb|1AXB|A Chain A, Tem-1 Beta-Lactamase From Escherichia Coli Inhibited With
An Acylation Transition State Analog
pdb|1BTL|A Chain A, Crystal Structure Of Escherichia Coli Tem1 Beta-Lactamase
At 1.8 Angstroms Resolution
pdb|1TEM|A Chain A, 6 Alpha Hydroxymethyl Penicilloic Acid Acylated On The
Tem- 1 Beta-Lactamase From Escherichia Coli
pdb|3C7U|A Chain A, Structural Insight Into The Kinetics And Cp Of
Interactions Between Tem-1-Lactamase And Blip
pdb|3C7U|C Chain C, Structural Insight Into The Kinetics And Cp Of
Interactions Between Tem-1-Lactamase And Blip
pdb|3C7V|A Chain A, Structural Insight Into The Kinetics And Delta-Cp Of
Interactions Between Tem-1 Beta-Lactamase And Blip
pdb|3C7V|C Chain C, Structural Insight Into The Kinetics And Delta-Cp Of
Interactions Between Tem-1 Beta-Lactamase And Blip
Length = 263
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1YT4|A Chain A, Crystal Structure Of Tem-76 Beta-Lactamase At 1.4 Angstrom
Resolution
Length = 263
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1PZP|A Chain A, Tem-1 Beta-Lactamase In Complex With A Novel, Core-
Disrupting, Allosteric Inhibitor
Length = 263
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1FQG|A Chain A, Molecular Structure Of The Acyl-Enzyme Intermediate In
Tem- 1 Beta-Lactamase
Length = 263
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|1LI0|A Chain A, Crystal Structure Of Tem-32 Beta-Lactamase At 1.6 Angstrom
Length = 263
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|3JYI|A Chain A, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
pdb|3JYI|B Chain B, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
pdb|3JYI|C Chain C, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
pdb|3JYI|D Chain D, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
pdb|3JYI|E Chain E, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
pdb|3JYI|F Chain F, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
Length = 263
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 169 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 209
>pdb|3P98|A Chain A, The Crystal Structure Of The Extended Spectrum
Beta-Lactamase Tem-72 Reveals Inhibition By Citrate
pdb|3P98|B Chain B, The Crystal Structure Of The Extended Spectrum
Beta-Lactamase Tem-72 Reveals Inhibition By Citrate
Length = 286
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 192 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 232
>pdb|1ZG4|A Chain A, Tem1 Beta Lactamase
Length = 286
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 192 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 232
>pdb|1ZG6|A Chain A, Tem1 Beta Lactamase Mutant S70g
Length = 286
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 72 FTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGK 112
T L L SR++++DW+ + P+L+S+ AG F+ K
Sbjct: 192 LTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADK 232
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 139 WLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKR--LIAYLEDMYEDSRGNKMV 196
WLG + R +YQ + + V D V V+ +++ + +A + ++ED G M
Sbjct: 446 WLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMF 505
Query: 197 VVRWF 201
WF
Sbjct: 506 HAHWF 510
>pdb|1REQ|B Chain B, Methylmalonyl-Coa Mutase
pdb|1REQ|D Chain D, Methylmalonyl-Coa Mutase
pdb|2REQ|B Chain B, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|2REQ|D Chain D, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|3REQ|B Chain B, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
Quality Structure)
pdb|6REQ|B Chain B, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|6REQ|D Chain D, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|B Chain B, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|D Chain D, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|4REQ|B Chain B, Methylmalonyl-Coa Mutase Substrate Complex
pdb|4REQ|D Chain D, Methylmalonyl-Coa Mutase Substrate Complex
pdb|5REQ|B Chain B, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|5REQ|D Chain D, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|1E1C|B Chain B, Methylmalonyl-Coa Mutase H244a Mutant
pdb|1E1C|D Chain D, Methylmalonyl-Coa Mutase H244a Mutant
Length = 637
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 217 DREIFFSLCLQDLSIECIDGLATV--LSPQHFEKFMNEATYPQLQPFICDKQFENDDVKP 274
++++ F+ CL+ L++ +DG+ V P+ K + YP + PF N D+
Sbjct: 49 EKQLTFAECLKRLTVHTVDGIDIVPMYRPKDAPKKLG---YPGVAPFTRGTTVRNGDMDA 105
Query: 275 FDI 277
+D+
Sbjct: 106 WDV 108
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 139 WLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKR--LIAYLEDMYEDSRGNKMV 196
WLG + R +YQ + + V D V V+ +++ + +A + ++ED G M
Sbjct: 7 WLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMF 66
Query: 197 VVRWF 201
WF
Sbjct: 67 HAHWF 71
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 139 WLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKR--LIAYLEDMYEDSRGNKMV 196
WLG + R +YQ + + V D V V+ +++ + +A + ++ED G M
Sbjct: 88 WLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMF 147
Query: 197 VVRWF 201
WF
Sbjct: 148 HAHWF 152
>pdb|2IU1|A Chain A, Crystal Structure Of Eif5 C-Terminal Domain
Length = 208
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 147 RKKRKHYQSFCRNGVKVS---VHDFVYVLAEENKRLIA----YLEDMYEDSRGNKMVVVR 199
+K R+H+ FC N K +H V+A +LI+ L++MY+ + V++
Sbjct: 63 KKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIIS 122
Query: 200 WFHK 203
W K
Sbjct: 123 WSEK 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,843,494
Number of Sequences: 62578
Number of extensions: 803934
Number of successful extensions: 1631
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1605
Number of HSP's gapped (non-prelim): 33
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)