BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005537
         (691 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
           GN=CMT2 PE=2 SV=3
          Length = 1295

 Score = 45.1 bits (105), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 152 HYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHK-IDEVGIF 210
           HY     +G   S+ DF Y+  EE +  +  + + ++ + G     V+WF++  D +   
Sbjct: 569 HYSQAKVDGHTFSLGDFAYIKGEEEETHVGQIVEFFKTTDGESYFRVQWFYRATDTIMER 628

Query: 211 LPHNFNDREIFFSLCLQDLSIECIDGLATVL 241
              N + R +F+S  + D  ++C+    TVL
Sbjct: 629 QATNHDKRRLFYSTVMNDNPVDCLISKVTVL 659


>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1
          Length = 1658

 Score = 39.7 bits (91), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 139  WLGSSW-----MSRKKRKHYQSFCRNGVKVSVHDFVYVLA--EENKRLIAYLEDMYEDSR 191
            W G+++       R +++ Y++  R    ++V D    L+    ++  I  +E M+E + 
Sbjct: 1483 WYGTAYRKAGVKGRARKQFYKTIKRGKETITVGDSAVFLSTGRPDRPYIGRIESMWETTT 1542

Query: 192  GNKMVVVRWFHKIDEV 207
            GNK+V V WF+  +E 
Sbjct: 1543 GNKVVRVAWFYHPEET 1558


>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
          Length = 1634

 Score = 36.2 bits (82), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 141  GSSWMSRKKRKHYQSFCRNGVKVSVHDFVYV-LAEEN-KRLIAYLEDMYEDSRGNKMVVV 198
            G++ +S   R + Q          V D+VYV  AE N +  I  +E ++EDS G K +  
Sbjct: 936  GTTGLSGLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYG 995

Query: 199  RWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQL 258
             WF++ +E        F ++E+F S     + +  I G   V+  + + K   E  +   
Sbjct: 996  CWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPE-NFRDE 1054

Query: 259  QPFICDKQF 267
              F+C+ ++
Sbjct: 1055 DVFVCESRY 1063


>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
          Length = 1689

 Score = 35.8 bits (81), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 141  GSSWMSRKKRKHYQSFCRNGVKVSVHDFVYV-LAEEN-KRLIAYLEDMYEDSRGNKMVVV 198
            G++ +S   R + Q          V D+VYV  AE N +  I  +E ++EDS G K +  
Sbjct: 936  GAAGLSGLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYG 995

Query: 199  RWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQL 258
             WF++ +E        F ++E+F S     + +  I G   V+  + + K          
Sbjct: 996  CWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFK---------- 1045

Query: 259  QPFICDKQFENDDV 272
               +C + F ++DV
Sbjct: 1046 ---LCPENFRDEDV 1056


>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1
          Length = 1633

 Score = 34.7 bits (78), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 15/110 (13%)

Query: 165  VHDFVYV-LAEEN-KRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFF 222
            V D+VYV  AE N +  I  +E ++EDS G K +   WF++ +E        F ++E+F 
Sbjct: 958  VGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFK 1017

Query: 223  SLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDV 272
            S     + +  I G   V+  + + K             +C + F ++DV
Sbjct: 1018 SDYYNKVPVSKILGKCVVMFVKEYFK-------------LCPENFRDEDV 1054


>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1
          Length = 912

 Score = 33.5 bits (75), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 11/119 (9%)

Query: 148 KKRKHYQSFCRNGVKVSVHDFVYVLAEENKR-LIAYLEDMYEDSRGNKMVVVRWFHKIDE 206
           K R HY+S   + V   + D VYV A EN+   I  + + +E +        RWF + ++
Sbjct: 171 KARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAED 230

Query: 207 VGI-------FLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQL 258
             I          H  + R +F S    D  ++CI     ++   H +  M+     QL
Sbjct: 231 TVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIV---HVDPNMDPKAKAQL 286


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,504,304
Number of Sequences: 539616
Number of extensions: 11518119
Number of successful extensions: 25552
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 25544
Number of HSP's gapped (non-prelim): 13
length of query: 691
length of database: 191,569,459
effective HSP length: 124
effective length of query: 567
effective length of database: 124,657,075
effective search space: 70680561525
effective search space used: 70680561525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)