Your job contains 1 sequence.
>005538
MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLE
DLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTP
AVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDV
GNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNIL
GAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGM
QWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQ
QNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQK
DADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTE
PAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNM
QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT
LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH
IANDDLQHGWCQRIKTEFTFEYNYLEDELIV
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005538
(691 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172389 - symbol:AT5G18230 species:3702 "Arabi... 855 2.8e-165 2
FB|FBgn0033029 - symbol:l(2)NC136 "lethal (2) NC136" spec... 440 1.3e-48 3
UNIPROTKB|F6XXD6 - symbol:CNOT3 "Uncharacterized protein"... 426 3.0e-48 3
DICTYBASE|DDB_G0272056 - symbol:DDB_G0272056 "putative CC... 431 1.0e-47 3
UNIPROTKB|O75175 - symbol:CNOT3 "CCR4-NOT transcription c... 426 1.6e-47 3
MGI|MGI:2385261 - symbol:Cnot3 "CCR4-NOT transcription co... 426 8.3e-47 3
UNIPROTKB|E2R344 - symbol:CNOT3 "Uncharacterized protein"... 412 2.3e-46 3
UNIPROTKB|E1BCS1 - symbol:CNOT3 "Uncharacterized protein"... 426 2.4e-46 3
RGD|1304771 - symbol:Cnot3 "CCR4-NOT transcription comple... 426 2.8e-46 3
ZFIN|ZDB-GENE-040927-6 - symbol:cnot3a "CCR4-NOT transcri... 402 2.7e-42 2
ASPGD|ASPL0000074489 - symbol:AN4585 species:162425 "Emer... 389 2.7e-40 2
POMBASE|SPAC1B3.05 - symbol:not3 "CCR4-Not complex subuni... 355 6.8e-38 2
UNIPROTKB|H0Y5X7 - symbol:CNOT3 "CCR4-NOT transcription c... 340 8.5e-33 2
WB|WBGene00003826 - symbol:ntl-3 species:6239 "Caenorhabd... 328 1.4e-32 2
UNIPROTKB|G5EFX8 - symbol:ntl-3 "Protein NTL-3, isoform a... 328 1.4e-32 2
ZFIN|ZDB-GENE-030131-5838 - symbol:cnot3b "CCR4-NOT trans... 235 3.9e-23 3
CGD|CAL0002492 - symbol:NOT5 species:5476 "Candida albica... 172 2.1e-18 2
UNIPROTKB|Q5A755 - symbol:NOT5 "Potential mRNA deadenylas... 172 2.1e-18 2
UNIPROTKB|F1RNH3 - symbol:CNOT3 "Uncharacterized protein"... 169 2.7e-17 3
UNIPROTKB|H7C5J4 - symbol:CNOT3 "CCR4-NOT transcription c... 195 1.8e-14 1
SGD|S000006276 - symbol:NOT5 "Component of the CCR4-NOT t... 123 9.0e-11 2
CGD|CAL0005191 - symbol:orf19.6075 species:5476 "Candida ... 157 2.1e-10 1
UNIPROTKB|F1MID5 - symbol:CNOT2 "Uncharacterized protein"... 153 2.8e-09 2
UNIPROTKB|F1M3V0 - symbol:Cnot2 "Protein Cnot2" species:1... 153 3.6e-09 3
UNIPROTKB|F1SH40 - symbol:CNOT2 "Uncharacterized protein"... 154 3.9e-09 2
MGI|MGI:1919318 - symbol:Cnot2 "CCR4-NOT transcription co... 153 5.0e-09 2
UNIPROTKB|E2QSF5 - symbol:CNOT2 "Uncharacterized protein"... 153 5.0e-09 2
UNIPROTKB|Q9NZN8 - symbol:CNOT2 "CCR4-NOT transcription c... 153 5.0e-09 2
UNIPROTKB|F1LY92 - symbol:Cnot2 "Protein Cnot2" species:1... 153 5.1e-09 3
UNIPROTKB|F1LUT7 - symbol:Cnot2 "Protein Cnot2" species:1... 153 5.2e-09 2
SGD|S000002324 - symbol:CDC36 "Component of the CCR4-NOT ... 143 6.8e-09 1
UNIPROTKB|H0YHT6 - symbol:CNOT2 "CCR4-NOT transcription c... 142 8.7e-09 1
UNIPROTKB|F8VV52 - symbol:CNOT2 "CCR4-NOT transcription c... 153 1.0e-08 3
UNIPROTKB|E1BCE7 - symbol:CNOT2 "Uncharacterized protein"... 153 1.1e-08 3
ZFIN|ZDB-GENE-070410-70 - symbol:zgc:162316 "zgc:162316" ... 162 1.6e-08 2
UNIPROTKB|Q5ZKI3 - symbol:CNOT2 "Uncharacterized protein"... 153 1.9e-08 3
RGD|1311672 - symbol:Cnot2 "CCR4-NOT transcription comple... 142 2.9e-08 3
SGD|S000001300 - symbol:NOT3 "Component of the CCR4-NOT t... 118 3.1e-08 2
UNIPROTKB|Q52JK6 - symbol:VIP2 "Probable NOT transcriptio... 154 2.4e-07 2
TAIR|locus:505006107 - symbol:NOT2a "Negative on TATA les... 134 2.8e-06 3
FB|FBgn0017550 - symbol:Rga "Regena" species:7227 "Drosop... 109 8.2e-06 2
TAIR|locus:2174259 - symbol:VIP2 "VIRE2 interacting prote... 132 1.1e-05 2
DICTYBASE|DDB_G0284577 - symbol:DDB_G0284577 "putative CC... 122 1.8e-05 2
POMBASE|SPCC4G3.15c - symbol:not2 "CCR4-Not complex subun... 129 2.8e-05 1
WB|WBGene00019273 - symbol:H43E16.1 species:6239 "Caenorh... 128 0.00028 1
UNIPROTKB|H7C148 - symbol:CNOT3 "CCR4-NOT transcription c... 120 0.00042 1
WB|WBGene00003825 - symbol:ntl-2 species:6239 "Caenorhabd... 120 0.00056 1
UNIPROTKB|Q10923 - symbol:ntl-2 "Protein NTL-2, isoform a... 120 0.00056 1
>TAIR|locus:2172389 [details] [associations]
symbol:AT5G18230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
EMBL:CP002688 GO:GO:0006355 KO:K12580 OMA:ESIYHLP IPI:IPI00939040
RefSeq:NP_001154716.1 UniGene:At.7555 ProteinModelPortal:F4JWJ7
PRIDE:F4JWJ7 EnsemblPlants:AT5G18230.2 GeneID:831941
KEGG:ath:AT5G18230 Uniprot:F4JWJ7
Length = 845
Score = 855 (306.0 bits), Expect = 2.8e-165, Sum P(2) = 2.8e-165
Identities = 218/430 (50%), Positives = 268/430 (62%)
Query: 1 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLE 60
+KLELILRLLDNDELSPEQVNDVKD L+DYVERNQDDF+EFSDVDELY LPLD+VE LE
Sbjct: 185 IKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEVEGLE 244
Query: 61 DLVTIGP-----PGLVKATVISTHQQVTSV------QEQGEDTASQDSNSDVAARTPPAK 109
DLVT GP P +K+++ ++ QV S+ QE+ EDT+ DS++++ +TPP K
Sbjct: 245 DLVTAGPLVKGTPLSMKSSLAASASQVRSISLPTHHQEKTEDTSLPDSSAEMVPKTPPPK 304
Query: 110 S-SGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPP 168
+ +G+ S STPA G P S+NVPA N SNTS L S + ++ G +S P
Sbjct: 305 NGAGLHSAPSTPAGG--RP-SLNVPA---GNVSNTSVTLSTSIPTQTSIESMGSLS---P 355
Query: 169 VNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAV 228
V + KEED P R+ S+ D + G G + +P+NG+ +
Sbjct: 356 V----AAKEEDATTLPSRKPPSSVADTPLRGIG-RVGIPNQPQPSQPPSPIPANGSRISA 410
Query: 229 PLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVA 288
++VAKRNI+G E VQ L SPLS +M+L AKGNDGT S DSN G+ A
Sbjct: 411 TSAAEVAKRNIMGVESN------VQPLTSPLS-KMVLPPTAKGNDGTAS-DSN-PGDVAA 461
Query: 289 MAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNL 346
GR F+PS+ G QWR G+ FQ+QNE RGRTEIAPDQREKF GH NL
Sbjct: 462 SIGRAFSPSIVSGSQWRPGSPFQSQNET--VRGRTEIAPDQREKFLQRLQQVQQ-GHGNL 518
Query: 347 LGMPL--GGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP 402
LG+P GGN KQFSSQQ NPLLQQ SSIS LG+GVQAPG N ++SASLQQQ
Sbjct: 519 LGIPSLSGGNEKQFSSQQQNPLLQQ----SSSISPHGSLGIGVQAPGFNVMSSASLQQQS 574
Query: 403 NPIHQQSSQQ 412
N + QQ QQ
Sbjct: 575 NAMSQQLGQQ 584
Score = 775 (277.9 bits), Expect = 2.8e-165, Sum P(2) = 2.8e-165
Identities = 156/289 (53%), Positives = 189/289 (65%)
Query: 405 IHQQSSQQTLMSGGQKD-ADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLK 463
+ QQS+ + G Q ADV H++ K + EDD K
Sbjct: 570 LQQQSNAMSQQLGQQPSVADVDHVR------NDDQSQQNLPDDSASIAASKAIQSEDDSK 623
Query: 464 APYAIDSSTGVSASLTEPAQVVRDTDXXXXXXXXXXXXXXXXXVIGRRSVSDLGAIGDSL 523
+ D+ +G+ + + +P QV D VIGRRS S+LGAIGD
Sbjct: 624 VLF--DTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGDP- 680
Query: 524 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS 583
+ V G MHDQM+N+QMLE+AFYK PQP DSER R Y PR+PA+TP ++PQ QAPI++
Sbjct: 681 --SAV--GPMHDQMHNLQMLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAPIIN 736
Query: 584 NPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK 643
NP WERL D+YGTDTLFFAFYYQQN+YQQYLAAKELKKQSWRYHRK+NTWFQRH+EPK
Sbjct: 737 NPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPK 796
Query: 644 VANDEFEQGTYVYFDFHIANDDLQHG-WCQRIKTEFTFEYNYLEDELIV 691
+A DE+EQG YVYFDF D+ Q G WCQRIK EFTFEY+YLEDEL+V
Sbjct: 797 IATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLEDELVV 845
>FB|FBgn0033029 [details] [associations]
symbol:l(2)NC136 "lethal (2) NC136" species:7227 "Drosophila
melanogaster" [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 EMBL:AE013599
GO:GO:0005634 GO:GO:0005737 GO:GO:0022008 GO:GO:0006355
GO:GO:0030014 GO:GO:0000289 eggNOG:COG5665 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AY069428
EMBL:BT083390 RefSeq:NP_610176.1 UniGene:Dm.2133 IntAct:Q7K126
STRING:Q7K126 EnsemblMetazoa:FBtr0086062 EnsemblMetazoa:FBtr0331970
GeneID:35501 KEGG:dme:Dmel_CG8426 UCSC:CG8426-RA
FlyBase:FBgn0033029 InParanoid:Q7K126 OrthoDB:EOG4NVX23
ChiTaRS:l(2)NC136 GenomeRNAi:35501 NextBio:793729 Uniprot:Q7K126
Length = 844
Score = 440 (159.9 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 84/153 (54%), Positives = 104/153 (67%)
Query: 536 QMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDS 595
QM QM+E+A+Y LPQP D+E+ ++Y R P +TP YPQ Q PI F++RLS
Sbjct: 703 QM-QFQMMEAAYYHLPQPMDTEKLQTYFHRAPVLTPSHYPQAQMPIYDTVEFYQRLS--- 758
Query: 596 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYV 655
T+TLFF FYY + + QYLAAK LKKQSWR+H KY WFQRHEEPK+ ND++EQGTY+
Sbjct: 759 --TETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINDDYEQGTYI 816
Query: 656 YFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 688
YFD+ W QR K FTFEY YLED+
Sbjct: 817 YFDYE--------KWSQRKKEGFTFEYKYLEDK 841
Score = 126 (49.4 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 52/152 (34%), Positives = 75/152 (49%)
Query: 2 KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDV---DELYHLLPL 53
KLE +LRLLDND + EQVN +KD +E Y++ +Q+ DFEE + D+ DE+ L
Sbjct: 186 KLETLLRLLDNDGVEAEQVNKIKDDVEYYIDSSQEPDFEENEFIYDDIIGLDEV-ELSGT 244
Query: 54 DKVESLEDLVTIGPPGLVKATVIS-----THQQVTSVQEQGEDTASQDSNSDVAA----R 104
+S T G P V + T QQ+ + QG AS S++ AA +
Sbjct: 245 ATTDSNNSNETSGSPSSVTSGGSPSQSPVTVQQILNTSSQG--AASSGSSAASAALFQQQ 302
Query: 105 TPPAKSSG--VGSTASTPAVGPATPISINVPA 134
A+S+G VG + T A + S + PA
Sbjct: 303 LTAAQSNGNNVGYASDTSAASSSATTSTD-PA 333
Score = 63 (27.2 bits), Expect = 4.9e-42, Sum P(3) = 4.9e-42
Identities = 46/215 (21%), Positives = 83/215 (38%)
Query: 92 TASQDSN-SDVAARTPPAKSSGVGSTASTPA-VGPATPISINVPAQTLSNASNTSPVLPG 149
TA+ DSN S+ + +P + +SG GS + +P V S A + S+A++ +
Sbjct: 244 TATTDSNNSNETSGSPSSVTSG-GSPSQSPVTVQQILNTSSQGAASSGSSAASAALFQQQ 302
Query: 150 SSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR-VMGRGGXXXXXX 208
++ + +N G S + + +++T + G L D R
Sbjct: 303 LTAAQSNGNNVGYASDTSAASSSATTSTDPAGGTVAVNCVGGLADKRNKSSESNALKLKP 362
Query: 209 XXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGA-----EERLGSSGMVQSLVSPLSNRM 263
T V + L PL SD I+ + +++L ++ + + + S
Sbjct: 363 QPHQLIKPTPVRATAKL---PLSSDTQVNKIVSSTPSKNQQQLPTAASIVATSAMQSQSS 419
Query: 264 ILSQAAKGNDGTGSIDS--NNAGETVAMAGRVFTP 296
I S ++ G G S NN G A+ TP
Sbjct: 420 IGSCSSTGGTGASQSASSGNNPGNNPAVQPNAPTP 454
Score = 52 (23.4 bits), Expect = 6.9e-41, Sum P(3) = 6.9e-41
Identities = 23/103 (22%), Positives = 42/103 (40%)
Query: 70 LVKATVISTHQQVTSVQEQGEDTASQDSNSD--------VAARTPPAKSSGVGSTASTPA 121
+V + + + + S G ASQ ++S V P SG+ + A++
Sbjct: 408 IVATSAMQSQSSIGSCSSTGGTGASQSASSGNNPGNNPAVQPNAPTPGQSGIAAAAASTN 467
Query: 122 VGPATPIS-INVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPI 163
V AT +S NV Q++ + T + + +N GP+
Sbjct: 468 VVSATIVSSANVQGQSVIQPTPTIAFAAVAKHNTSLLEN-GPV 509
Score = 49 (22.3 bits), Expect = 3.7e-40, Sum P(2) = 3.7e-40
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 77 STHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 131
+ QQ+TS Q+Q Q N+ +AA T + GS A PIS N
Sbjct: 618 TNQQQLTSQQQQ------QLQNNSLAATTGSNNGTSTGSGLMNVANATGQPISGN 666
Score = 44 (20.5 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 274 GTGSIDSNNAGET 286
GT + DSNN+ ET
Sbjct: 243 GTATTDSNNSNET 255
Score = 37 (18.1 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 355 KQFSSQQNPLLQQFNSQGSSISAQ 378
+Q SQ++ LLQ FNS+ ++ Q
Sbjct: 600 RQPQSQKS-LLQHFNSETNTNQQQ 622
>UNIPROTKB|F6XXD6 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 CTD:4849 KO:K12580 GeneTree:ENSGT00390000014743
OMA:ESIYHLP EMBL:AAEX03000741 Ensembl:ENSCAFT00000004262
RefSeq:XP_541428.3 GeneID:484312 KEGG:cfa:484312 Uniprot:F6XXD6
Length = 753
Score = 426 (155.0 bits), Expect = 3.0e-48, Sum P(3) = 3.0e-48
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749
Score = 127 (49.8 bits), Expect = 3.0e-48, Sum P(3) = 3.0e-48
Identities = 68/277 (24%), Positives = 103/277 (37%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--ELYHLLPLDK 55
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D ++ L
Sbjct: 183 LETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVATS 242
Query: 56 VES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSDVAARTPPAK 109
S +ED + +T S+ E ED + ++D PAK
Sbjct: 243 PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAK 302
Query: 110 SSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPV 169
+ ++ PA P S ++A +T+P G+S+ GP +S P
Sbjct: 303 NGSKPVHSNQHPQSPAVPPSYPPGPPPATSALSTTPGNNGASTPAAPTSALGPKASPAPS 362
Query: 170 NLTSSTKEEDVGNFPGRRSSPSLTDVR---VMGRGGXXXXXXXXXXXXXATAVPSNG--- 223
+ + + P S S T R V GG + + G
Sbjct: 363 HSSGTPAPYAQAVAPPAPSGSSTTQPRPPSVQPGGGGGSGGGGSGGSGSSNSSGGGGAGK 422
Query: 224 NLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLS 260
GA S VA A G SG + P S
Sbjct: 423 QNGATSYSSVVADSPAEVALSSSGGSGASSQALGPPS 459
Score = 76 (31.8 bits), Expect = 8.6e-42, Sum P(3) = 8.6e-42
Identities = 31/88 (35%), Positives = 40/88 (45%)
Query: 97 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 149
S S V A +P A SS GS AS+ A+GP + N P T S +P V PG
Sbjct: 428 SYSSVVADSPAEVALSSSGGSGASSQALGPPSGPH-NPPPSTSKEPSAAAPAGAGGVAPG 486
Query: 150 SSSVRGVFDNTGPISSSPPVNLTSSTKE 177
S + G P+ +PP + T S E
Sbjct: 487 SGNNTGGPSLLVPLPVNPPSSPTPSFSE 514
Score = 48 (22.0 bits), Expect = 3.0e-48, Sum P(3) = 3.0e-48
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 358 SSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSS 410
S NP S+ S +A AG G GV APG + T P P++ SS
Sbjct: 459 SGPHNP--PPSTSKEPSAAAPAGAG-GV-APGSGNNTGGPSLLVPLPVNPPSS 507
Score = 47 (21.6 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 66 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 125
GPP A I + ++S++ E A D + + S+ S P
Sbjct: 524 GPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQ 583
Query: 126 TPIS---INVP 133
P+ +N+P
Sbjct: 584 PPLQLSEVNIP 594
Score = 37 (18.1 bits), Expect = 4.2e-47, Sum P(3) = 4.2e-47
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 348 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 388
G L G QFS+ + S S++ +A + G++ P
Sbjct: 519 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 559
>DICTYBASE|DDB_G0272056 [details] [associations]
symbol:DDB_G0272056 "putative CCR4-NOT complex
subunit 3" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007207
InterPro:IPR007282 InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153
PIRSF:PIRSF005290 dictyBase:DDB_G0272056 GO:GO:0005634
GO:GO:0006355 EMBL:AAFI02000007 eggNOG:COG5665 KO:K12580
RefSeq:XP_645358.1 ProteinModelPortal:Q55AA8
EnsemblProtists:DDB0219997 GeneID:8618247 KEGG:ddi:DDB_G0272056
InParanoid:Q55AA8 OMA:GHIKSEE Uniprot:Q55AA8
Length = 866
Score = 431 (156.8 bits), Expect = 1.0e-47, Sum P(3) = 1.0e-47
Identities = 83/157 (52%), Positives = 104/157 (66%)
Query: 532 GMHDQMY-NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER 590
G + M M++ +F LP KD ER ++IPR+P P YPQ P+ +P +E+
Sbjct: 722 GFEEAMILTRHMMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEK 781
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFE 650
+D TLFF FY++Q TYQQY AAKELKKQ WRYH+KY TWF+RHEEPK +EFE
Sbjct: 782 FDID-----TLFFIFYFKQGTYQQYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFE 836
Query: 651 QGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
QGTYVYFD+ + GWCQR KTEFTFEY +LE+
Sbjct: 837 QGTYVYFDY-------ETGWCQRKKTEFTFEYRFLEE 866
Score = 108 (43.1 bits), Expect = 1.0e-47, Sum P(3) = 1.0e-47
Identities = 48/201 (23%), Positives = 91/201 (45%)
Query: 1 MKLELILRLLDNDELSPEQVNDVKDLLEDYVER--NQDDFEEFSDVDELYHLLP--LDKV 56
+ LE +LR++D+D + +++ +KD +E Y++ +D +EE ++ +++ P + +
Sbjct: 184 LALEFLLRMMDDDRIPTDEIEKIKDSVECYIDSYTQEDTYEEPGEIYSIFNFKPHNITDI 243
Query: 57 ESLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQ-DSNS---DVAARTPPAKSSG 112
E ED + + + ++++S+ DSNS D TP ++
Sbjct: 244 ED-EDFDFSLDEESDDDDDDDDYSDASDHDDDDDESSSKKDSNSENEDEIKETPKVATA- 301
Query: 113 VGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLT 172
TA+ A PI I+ Q N SP+L +++ R G S +P NL+
Sbjct: 302 ---TATATAEKSTQPI-ISTSIQQQLPQPNKSPILQPNNTAR-----IG--SPTPTTNLS 350
Query: 173 SSTKEEDVGNFPGRRSSPSLT 193
T+ P + S+PS T
Sbjct: 351 QQTQ-------PTKASTPSPT 364
Score = 77 (32.2 bits), Expect = 1.7e-44, Sum P(3) = 1.7e-44
Identities = 37/172 (21%), Positives = 70/172 (40%)
Query: 17 PEQVNDVKDLLEDY-VERNQDDFEEFSDV-DELYHLLPLDKVESLEDLVTIGPPGLVKAT 74
P + D++D D+ ++ DD ++ D D H D+ S +D + + +
Sbjct: 237 PHNITDIEDEDFDFSLDEESDDDDDDDDYSDASDHDDDDDESSSKKDSNSENEDEIKETP 296
Query: 75 VISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPA 134
++T + ++ + S + + + P S + +T +G TP + N+
Sbjct: 297 KVATATATATAEKSTQPIIS----TSIQQQLPQPNKSPILQPNNTARIGSPTPTT-NLSQ 351
Query: 135 QTL-SNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKE-EDVGNFP 184
QT + AS SP SS + N S S P +T ++ +GN P
Sbjct: 352 QTQPTKASTPSPTF--SSVTKTSIKNDNKQSHSQPTPVTIPNQQFPSLGNVP 401
Score = 61 (26.5 bits), Expect = 1.0e-47, Sum P(3) = 1.0e-47
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 354 NKQFSSQQN-PLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 412
N+QF S N P+ Q+ Q + A A L Q QQQ QQ QQ
Sbjct: 391 NQQFPSLGNVPMAQRLMQQQAQQQAAAAAQLAAQQAQTQQTQQQQQQQQQQQQQQQQQQQ 450
Score = 49 (22.3 bits), Expect = 1.8e-46, Sum P(3) = 1.8e-46
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 399 QQQPNPIHQQSSQQTLMSGGQKDADVSH 426
QQQ HQQS QQ+ Q+ H
Sbjct: 577 QQQQQQSHQQSHQQSHQQSQQQSQQSQH 604
Score = 47 (21.6 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 18/98 (18%), Positives = 40/98 (40%)
Query: 551 PQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQN 610
PQP+ + + P P PQ Q P + + Y+QQ
Sbjct: 616 PQPQPQPQPQPQPQPQPQPQPQPQPQQQQPQHQSQQHQPQPQQPQQPQQPQHQP-YHQQQ 674
Query: 611 TYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDE 648
+YQQ + ++Q +Y ++ Q++++ +++ ++
Sbjct: 675 SYQQ-----QQQQQQQQYQQQQQQQQQQYQQQQMSQNQ 707
Score = 45 (20.9 bits), Expect = 4.7e-46, Sum P(3) = 4.7e-46
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 360 QQNPLLQQF-NSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 412
QQ P QQ N+Q + + Q+ + VQ +S++ +++QQ P Q QQ
Sbjct: 467 QQAPQQQQQQNTQFKNKTGQSDIN-DVQ----DSLSQLNIKQQQQPPQQPQQQQ 515
Score = 41 (19.5 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 397 SLQQQPNPIHQQSSQQTLMS 416
S QQ HQQS QQ+ S
Sbjct: 583 SHQQSHQQSHQQSQQQSQQS 602
Score = 40 (19.1 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 399 QQQPNPIHQQSSQQTLMSGGQKDADVSHLK 428
QQQ QQ QQ Q AD+ K
Sbjct: 512 QQQQQQQQQQQQQQQQQQQQQPQADLDDSK 541
Score = 39 (18.8 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 399 QQQPNPIHQQSSQQ 412
Q Q P HQQ S Q
Sbjct: 664 QPQHQPYHQQQSYQ 677
Score = 39 (18.8 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 387 APGMNSVTSASLQQQPNPIHQQSSQQTL 414
+P +SVT S++ H Q + T+
Sbjct: 362 SPTFSSVTKTSIKNDNKQSHSQPTPVTI 389
>UNIPROTKB|O75175 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:2000036 "regulation of stem cell maintenance" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 GO:GO:0000932
GO:GO:0000289 EMBL:AF180474 EMBL:AB014591 EMBL:AL133647
EMBL:BC016474 IPI:IPI00005015 IPI:IPI00186188 IPI:IPI00478453
PIR:T43456 RefSeq:NP_055331.1 UniGene:Hs.343571
ProteinModelPortal:O75175 DIP:DIP-40297N IntAct:O75175
MINT:MINT-1439009 STRING:O75175 PhosphoSite:O75175 PaxDb:O75175
PRIDE:O75175 Ensembl:ENST00000221232 Ensembl:ENST00000358389
Ensembl:ENST00000406403 Ensembl:ENST00000570333
Ensembl:ENST00000570863 Ensembl:ENST00000570970
Ensembl:ENST00000570997 Ensembl:ENST00000571055
Ensembl:ENST00000571119 Ensembl:ENST00000572058
Ensembl:ENST00000572589 Ensembl:ENST00000572598
Ensembl:ENST00000572852 Ensembl:ENST00000573388
Ensembl:ENST00000573528 Ensembl:ENST00000573769
Ensembl:ENST00000574556 Ensembl:ENST00000574815
Ensembl:ENST00000574965 Ensembl:ENST00000575585
Ensembl:ENST00000576314 Ensembl:ENST00000576558
Ensembl:ENST00000576765 Ensembl:ENST00000577005 GeneID:4849
KEGG:hsa:4849 UCSC:uc002qdj.2 CTD:4849 GeneCards:GC19P054641
HGNC:HGNC:7879 HPA:HPA006408 MIM:604910 neXtProt:NX_O75175
PharmGKB:PA26674 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 InParanoid:O75175 KO:K12580 OMA:IFYYLEP
OrthoDB:EOG41JZDJ PhylomeDB:O75175 GenomeRNAi:4849 NextBio:18674
ArrayExpress:O75175 Bgee:O75175 CleanEx:HS_CNOT3
Genevestigator:O75175 GermOnline:ENSG00000088038 Uniprot:O75175
Length = 753
Score = 426 (155.0 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749
Score = 120 (47.3 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 52/207 (25%), Positives = 84/207 (40%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--ELYHLLPLDK 55
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D ++ L
Sbjct: 183 LETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVATS 242
Query: 56 VES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSDVAARTPPAK 109
S +ED + +T S+ E ED + ++D PAK
Sbjct: 243 PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAK 302
Query: 110 SSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPV 169
+ ++ PA P + ++A +T+P G + GP +S P
Sbjct: 303 NGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPS 362
Query: 170 NLTSSTKEEDVGNFPGRRSSPSLTDVR 196
+ + + P S PS T R
Sbjct: 363 HNSGTPAPYAQAVAPPAPSGPSTTQPR 389
Score = 72 (30.4 bits), Expect = 2.3e-41, Sum P(3) = 2.3e-41
Identities = 29/85 (34%), Positives = 39/85 (45%)
Query: 97 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 149
S S V A +P A SS G+ AS+ A+GP + N P T S +P V PG
Sbjct: 428 SYSSVVADSPAEVALSSSGGNNASSQALGPPSGPH-NPPPSTSKEPSAAAPTGAGGVAPG 486
Query: 150 SSSVRGVFDNTGPISSSPPVNLTSS 174
S + G P+ +PP + T S
Sbjct: 487 SGNNSGGPSLLVPLPVNPPSSPTPS 511
Score = 48 (22.0 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 352 GGNKQFSSQQNPLLQQFN---SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQ 408
GGN S P N S SA A G G APG + + P P++
Sbjct: 446 GGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPP 505
Query: 409 SS 410
SS
Sbjct: 506 SS 507
Score = 47 (21.6 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 66 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 125
GPP A I + ++S++ E A D + + S+ S P
Sbjct: 524 GPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQ 583
Query: 126 TPIS---INVP 133
P+ +N+P
Sbjct: 584 PPLQLSEVNIP 594
Score = 44 (20.5 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 23/98 (23%), Positives = 33/98 (33%)
Query: 73 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 132
+ V + +V G + +SQ PP +S S A+ G P S N
Sbjct: 431 SVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNN 490
Query: 133 PAQTLSNASNTSPVLPGSSSVRGVFDN--TGPISSSPP 168
+ PV P SS D G + + PP
Sbjct: 491 SGGP--SLLVPLPVNPPSSPTPSFSDAKAAGALLNGPP 526
Score = 40 (19.1 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 24/78 (30%), Positives = 30/78 (38%)
Query: 98 NSDVAARTPPAKSSGVGSTAS-TPAVGPATPI----SINVPAQTLSNASNTSPVLPGSSS 152
N+ V A P A S +G AS P+ TP ++ PA S S T P P
Sbjct: 340 NNGVPA--PAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAP--SGPSTTQPRPPSVQP 395
Query: 153 VRGVFDNTGPISSSPPVN 170
G +G SS N
Sbjct: 396 SGGGGGGSGGGGSSSSSN 413
Score = 37 (18.1 bits), Expect = 2.2e-46, Sum P(3) = 2.2e-46
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 348 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 388
G L G QFS+ + S S++ +A + G++ P
Sbjct: 519 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 559
Score = 37 (18.1 bits), Expect = 9.9e-38, Sum P(3) = 9.9e-38
Identities = 29/105 (27%), Positives = 39/105 (37%)
Query: 89 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP 148
G S+S+ +A K +G S +S A PA A + S +N S
Sbjct: 402 GSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEV------ALSSSGGNNASSQAL 455
Query: 149 GSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSS-PSL 192
G S G N P +S P + + T V G S PSL
Sbjct: 456 GPPS--GPH-NPPPSTSKEP-SAAAPTGAGGVAPGSGNNSGGPSL 496
>MGI|MGI:2385261 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10090 "Mus musculus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:2000036 "regulation of stem cell
maintenance" evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
MGI:MGI:2385261 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 CTD:4849 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 KO:K12580 OrthoDB:EOG41JZDJ EMBL:BC030332
EMBL:BC053437 EMBL:BC141041 IPI:IPI00169667 RefSeq:NP_666288.1
UniGene:Mm.358731 ProteinModelPortal:Q8K0V4 DIP:DIP-46844N
IntAct:Q8K0V4 STRING:Q8K0V4 PhosphoSite:Q8K0V4 PaxDb:Q8K0V4
PRIDE:Q8K0V4 Ensembl:ENSMUST00000038913 GeneID:232791
KEGG:mmu:232791 UCSC:uc009evl.2 GeneTree:ENSGT00390000014743
InParanoid:B2RUA7 OMA:ESIYHLP NextBio:381230 Bgee:Q8K0V4
CleanEx:MM_CNOT3 Genevestigator:Q8K0V4
GermOnline:ENSMUSG00000035632 Uniprot:Q8K0V4
Length = 751
Score = 426 (155.0 bits), Expect = 8.3e-47, Sum P(3) = 8.3e-47
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747
Score = 124 (48.7 bits), Expect = 8.3e-47, Sum P(3) = 8.3e-47
Identities = 54/203 (26%), Positives = 85/203 (41%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--ELYHLLPLDK 55
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D ++ L
Sbjct: 183 LETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVATS 242
Query: 56 VES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSDVAARTPPAK 109
S +ED + +T S+ E ED + ++D PAK
Sbjct: 243 PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAK 302
Query: 110 SSGVGSTASTPAVGPATPISI-NVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPP 168
+ ++ PA P + + P T S S+T P G+S+ GP +S P
Sbjct: 303 NGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSST-PGNNGASTPAAPTSALGPKASPAP 361
Query: 169 VNLTSSTKEEDVGNFPGRRSSPS 191
+ + + P S PS
Sbjct: 362 SHNSGTPAPYAQAVAPPNASGPS 384
Score = 72 (30.4 bits), Expect = 2.2e-41, Sum P(3) = 2.2e-41
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 97 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVR 154
S S V A +P SS GS+AS+ A+GP + + PA + S S+T+ +
Sbjct: 426 SYSSVVADSPAEVTLSSSGGSSASSQALGPTS--GPHNPAPSTSKESSTAAPSGAGNVAS 483
Query: 155 GVFDNTG------PISSSPPVNLTSSTKE 177
G +N+G P+ +PP + T S E
Sbjct: 484 GSGNNSGGPSLLVPLPVNPPSSPTPSFSE 512
Score = 53 (23.7 bits), Expect = 5.0e-39, Sum P(2) = 5.0e-39
Identities = 26/114 (22%), Positives = 44/114 (38%)
Query: 72 KATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS---TPAVGPA--T 126
+ T+ S+ S Q G + + + + A SG G+ AS + GP+
Sbjct: 437 EVTLSSSGGSSASSQALGPTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSLLV 496
Query: 127 PISINVPAQ---TLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKE 177
P+ +N P+ + S A +L G F T I + P++ S E
Sbjct: 497 PLPVNPPSSPTPSFSEAKAAGTLLNGPPQ----FSTTPEIKAPEPLSSLKSMAE 546
Score = 46 (21.3 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 31/109 (28%), Positives = 42/109 (38%)
Query: 89 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP 148
G + SNS+ K +G S +S A PA TLS++ +S
Sbjct: 400 GGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEV--------TLSSSGGSS---- 447
Query: 149 GSSSVRGVFDNTGPISSSPPVNLTSSTKEED-VGNFP---GRRSS-PSL 192
SS G +GP + +P + SST GN G S PSL
Sbjct: 448 ASSQALG--PTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSL 494
Score = 41 (19.5 bits), Expect = 9.1e-38, Sum P(2) = 9.1e-38
Identities = 14/71 (19%), Positives = 24/71 (33%)
Query: 66 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 125
GPP I + ++S++ E A D + S+ S P
Sbjct: 522 GPPQFSTTPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQ 581
Query: 126 TPIS---INVP 133
P+ +N+P
Sbjct: 582 PPLQLSEVNIP 592
Score = 40 (19.1 bits), Expect = 4.7e-38, Sum P(3) = 4.7e-38
Identities = 24/103 (23%), Positives = 37/103 (35%)
Query: 73 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 132
+ V + +VT G +SQ P +S STA+ G NV
Sbjct: 429 SVVADSPAEVTLSSSGGSSASSQALGPTSGPHNPAPSTSKESSTAAPSGAG-------NV 481
Query: 133 PAQTLSNASNTS-----PVLPGSSSVRGVFDN--TGPISSSPP 168
+ + +N+ S PV P SS + G + + PP
Sbjct: 482 ASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLLNGPP 524
Score = 37 (18.1 bits), Expect = 8.3e-47, Sum P(3) = 8.3e-47
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 348 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 388
G L G QFS+ + S S++ +A + G++ P
Sbjct: 517 GTLLNGPPQFSTTPEIKAPEPLSSLKSMAERAAISSGIEDP 557
>UNIPROTKB|E2R344 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 Ensembl:ENSCAFT00000004262 Uniprot:E2R344
Length = 710
Score = 412 (150.1 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 82/153 (53%), Positives = 100/153 (65%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
+Q+Y M E+A++ +P P DSER R++ PR+P TPP + Q+ P F++RLS
Sbjct: 568 EQLYQQAMEEAAWHHMPHPSDSERIRTF-PRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 624
Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 625 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 681
Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+YFD+ W QR K FTFEY YLED
Sbjct: 682 IYFDYE--------KWGQRKKEGFTFEYRYLED 706
Score = 114 (45.2 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 44/163 (26%), Positives = 72/163 (44%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--ELYHLLPLDK 55
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D ++ L
Sbjct: 183 LETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVATS 242
Query: 56 VES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSDVAARTPPAK 109
S +ED + +T S+ E ED + ++D PAK
Sbjct: 243 PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAK 302
Query: 110 SSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSS 152
+ ++ PA P S ++A +T+P G+S+
Sbjct: 303 NGSKPVHSNQHPQSPALPPSYPPGPPPATSALSTTPGNNGAST 345
Score = 74 (31.1 bits), Expect = 6.5e-40, Sum P(3) = 6.5e-40
Identities = 30/86 (34%), Positives = 39/86 (45%)
Query: 99 SDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPGSS 151
S V A +P A SS GS AS+ A+GP + N P T S +P V PGS
Sbjct: 388 SSVVADSPAEVALSSSGGSGASSQALGPPSGPH-NPPPSTSKEPSAAAPAGAGGVAPGSG 446
Query: 152 SVRGVFDNTGPISSSPPVNLTSSTKE 177
+ G P+ +PP + T S E
Sbjct: 447 NNTGGPSLLVPLPVNPPSSPTPSFSE 472
Score = 59 (25.8 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 40/146 (27%), Positives = 52/146 (35%)
Query: 271 GNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFR------GRTEIA 324
GN+G S A T A+A R P G RT + G F G + +
Sbjct: 339 GNNGA----STPAAPTSALANRTAPPVSG---RTAGGWGGLGLAGSFHSLFPPPGYSSVV 391
Query: 325 PDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLG 384
D + S LG P G + NP S+ S +A AG G G
Sbjct: 392 ADSPAEVALSSSGGSGAS-SQALGPPSGPH-------NP--PPSTSKEPSAAAPAGAG-G 440
Query: 385 VQAPGMNSVTSASLQQQPNPIHQQSS 410
V APG + T P P++ SS
Sbjct: 441 V-APGSGNNTGGPSLLVPLPVNPPSS 465
Score = 50 (22.7 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
Identities = 17/65 (26%), Positives = 23/65 (35%)
Query: 67 PPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPAT 126
PPG + V + +V G +SQ PP +S S A+ G
Sbjct: 384 PPGY-SSVVADSPAEVALSSSGGSGASSQALGPPSGPHNPPPSTSKEPSAAAPAGAGGVA 442
Query: 127 PISIN 131
P S N
Sbjct: 443 PGSGN 447
Score = 47 (21.6 bits), Expect = 8.9e-37, Sum P(2) = 8.9e-37
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 66 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 125
GPP A I + ++S++ E A D + + S+ S P
Sbjct: 482 GPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQ 541
Query: 126 TPIS---INVP 133
P+ +N+P
Sbjct: 542 PPLQLSEVNIP 552
Score = 43 (20.2 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 106 PPAKSSGVGSTASTPAV-GPATPISINVPAQTLSNASNTSPVLPGSSS 152
PP + ++TP G +TP + P L+N T+P + G ++
Sbjct: 324 PPGPPPATSALSTTPGNNGASTPAA---PTSALAN--RTAPPVSGRTA 366
Score = 37 (18.1 bits), Expect = 4.4e-44, Sum P(3) = 4.4e-44
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 348 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 388
G L G QFS+ + S S++ +A + G++ P
Sbjct: 477 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 517
>UNIPROTKB|E1BCS1 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:DAAA02047818
IPI:IPI00685943 RefSeq:XP_002695478.1 Ensembl:ENSBTAT00000019836
GeneID:527305 KEGG:bta:527305 NextBio:20874556 Uniprot:E1BCS1
Length = 744
Score = 426 (155.0 bits), Expect = 2.4e-46, Sum P(3) = 2.4e-46
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 601 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 658
Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 659 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 715
Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+YFD+ W QR K FTFEY YLED
Sbjct: 716 IYFDYE--------KWGQRKKEGFTFEYRYLED 740
Score = 113 (44.8 bits), Expect = 2.4e-46, Sum P(3) = 2.4e-46
Identities = 46/179 (25%), Positives = 74/179 (41%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--ELYHLLPLDK 55
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D ++ L
Sbjct: 183 LETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVATS 242
Query: 56 VES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSDVAARTPPAK 109
S +ED + +T S+ E ED + ++D PAK
Sbjct: 243 PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAK 302
Query: 110 SSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPP 168
+ +S PA P S ++A + +P G+ + G +S P
Sbjct: 303 NGSKPVHSSQHPQSPAVPPSYPPGPPPAASALSATPGSNGAPAAAAPASALGAKASPAP 361
Score = 79 (32.9 bits), Expect = 3.6e-42, Sum P(3) = 3.6e-42
Identities = 31/88 (35%), Positives = 40/88 (45%)
Query: 97 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPV-----LPG 149
S S V A +P A SS GS+ + A+GP P N P T S T+PV PG
Sbjct: 419 SYSSVVADSPAEAALSSTGGSSTGSQALGPP-PGPHNPPPSTAKEPSATAPVGAGGVAPG 477
Query: 150 SSSVRGVFDNTGPISSSPPVNLTSSTKE 177
S + G P+ +PP + T S E
Sbjct: 478 SGNNAGGPSLLVPLPVNPPSSPTPSFSE 505
Score = 47 (21.6 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 66 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSD-VAARTPPAKSSGVGSTASTPAVG- 123
GPP A I + ++S++ E A D V + + ST++ PA
Sbjct: 515 GPPQFSAAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDILLSSTSAPPASAQ 574
Query: 124 PATPIS-INVP 133
P +S +N+P
Sbjct: 575 PPLQLSEVNIP 585
Score = 43 (20.2 bits), Expect = 2.4e-46, Sum P(3) = 2.4e-46
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 376 SAQAGLGLGVQAPGM-NSVTSASLQQQPNPIHQQSS 410
SA A +G G APG N+ SL P P++ SS
Sbjct: 464 SATAPVGAGGVAPGSGNNAGGPSLLV-PLPVNPPSS 498
Score = 37 (18.1 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 348 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 388
G L G QFS+ + S S++ +A + G++ P
Sbjct: 510 GSLLNGPPQFSAAPEIKAPEPLSSLKSMAERAAISSGIEDP 550
>RGD|1304771 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
RGD:1304771 GO:GO:0005634 GO:GO:0006355 GO:GO:0000932 CTD:4849
KO:K12580 OrthoDB:EOG41JZDJ OMA:ESIYHLP EMBL:AC103574 EMBL:AC126217
IPI:IPI00192709 RefSeq:NP_001100941.2 UniGene:Rn.212216
Ensembl:ENSRNOT00000064411 GeneID:308311 KEGG:rno:308311
UCSC:RGD:1304771 NextBio:658574 ArrayExpress:D3ZXE8 Uniprot:D3ZXE8
Length = 751
Score = 426 (155.0 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747
Score = 119 (46.9 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 50/202 (24%), Positives = 84/202 (41%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--ELYHLLPLDK 55
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D ++ L
Sbjct: 183 LETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVATS 242
Query: 56 VES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSDVAARTPPAK 109
S +ED + +T S+ E ED + ++D PAK
Sbjct: 243 PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAK 302
Query: 110 SSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPV 169
+ ++ PA P + ++A +++P G+S+ GP +S P
Sbjct: 303 NGSKPVHSNQHPQSPAVPPTYPSGPPPATSALSSTPGNNGASTPAAPPSALGPKASPAPS 362
Query: 170 NLTSSTKEEDVGNFPGRRSSPS 191
+ + + P S PS
Sbjct: 363 HNSGTPAPYAQAVAPPNASGPS 384
Score = 80 (33.2 bits), Expect = 3.2e-42, Sum P(3) = 3.2e-42
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 97 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVR 154
S S V A +P A SS GS+AS+ A+GP + P+ TL +S +P G+ SV
Sbjct: 426 SYSSVVADSPAEVALSSSGGSSASSQALGPTSGPHNPAPS-TLKESSTAAP--SGAGSVA 482
Query: 155 -GVFDNTG------PISSSPPVNLTSSTKE 177
G +N+G P+ +PP + T S E
Sbjct: 483 SGSGNNSGGPSLLVPLPVNPPSSPTPSFSE 512
Score = 54 (24.1 bits), Expect = 1.6e-39, Sum P(3) = 1.6e-39
Identities = 21/67 (31%), Positives = 27/67 (40%)
Query: 103 ARTPPAKSSGVGSTAS-TPA--VGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDN 159
A TP A S +G AS P+ G P + V S SN P P + G
Sbjct: 343 ASTPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGG 402
Query: 160 TGPISSS 166
+G SS+
Sbjct: 403 SGGSSSN 409
Score = 41 (19.5 bits), Expect = 9.1e-38, Sum P(2) = 9.1e-38
Identities = 14/71 (19%), Positives = 24/71 (33%)
Query: 66 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 125
GPP I + ++S++ E A D + S+ S P
Sbjct: 522 GPPQFSTTPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQ 581
Query: 126 TPIS---INVP 133
P+ +N+P
Sbjct: 582 PPLQLSEVNIP 592
Score = 38 (18.4 bits), Expect = 7.5e-38, Sum P(3) = 7.5e-38
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 89 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA-TPISINVPAQTLSNASN-TS-P 145
G + SNS+ K +G S +S A PA +S + + S A TS P
Sbjct: 400 GGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVALSSSGGSSASSQALGPTSGP 459
Query: 146 VLPGSSSVR 154
P S+++
Sbjct: 460 HNPAPSTLK 468
Score = 37 (18.1 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 348 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 388
G L G QFS+ + S S++ +A + G++ P
Sbjct: 517 GTLLNGPPQFSTTPEIKAPEPLSSLKSMAERAAISSGIEDP 557
>ZFIN|ZDB-GENE-040927-6 [details] [associations]
symbol:cnot3a "CCR4-NOT transcription complex,
subunit 3a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-040927-6 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000014743 EMBL:CR854927 IPI:IPI00996653
Ensembl:ENSDART00000137699 ArrayExpress:E9QGK5 Bgee:E9QGK5
Uniprot:E9QGK5
Length = 901
Score = 402 (146.6 bits), Expect = 2.7e-42, Sum P(2) = 2.7e-42
Identities = 80/153 (52%), Positives = 98/153 (64%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
+Q+Y M E+A+ +P P DSER R Y+ R+P TPP + Q+ + F++RLS
Sbjct: 758 EQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTPPFHHQMPPHHSDSIEFYQRLS-- 815
Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
T+TLFF FYY + T QYL+AK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 816 ---TETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 872
Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+YFD+ W QR K FTFEY YLED
Sbjct: 873 IYFDYE--------KWGQRKKEGFTFEYRYLED 897
Score = 118 (46.6 bits), Expect = 2.7e-42, Sum P(2) = 2.7e-42
Identities = 98/506 (19%), Positives = 185/506 (36%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESLED 61
LE ILR+LDND + + ++ +KD +E Y++ +QD DFEE + LY L L+ + +
Sbjct: 183 LETILRMLDNDSIQVDAIHKIKDDVEYYIDSSQDPDFEEN---EFLYDDLDLEDIPAT-- 237
Query: 62 LVTIGPPGLVKATV-ISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTP 120
L+ P G ++ + + + TS S + + +S+ S S
Sbjct: 238 LMATSPQGHIEDEMFLQSSSTPTSTTSSSPIPPSPATGTTEILEDKRGRSTD--SEVSQS 295
Query: 121 AVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDV 180
V P + + S +S++S L ++V G SS + +S+ ++
Sbjct: 296 PVKNGNPSLSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSG-GSSLLASFSSAVQQHPP 354
Query: 181 GNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNIL 240
+ +++ L+ + A+++PS+ G + S ++
Sbjct: 355 QS--QQQTQVKLSSTSIPSNNTPSPPSHPTLPASTASSLPSSSTPGPITSNSLSQASSVP 412
Query: 241 GAEER---LGSSGMV---QSLVSPLSNRMILSQAAKGNDGTGSID-SNNAGETVAMAGRV 293
G E LG G+ S VS + + S ++ N G + S A A AG
Sbjct: 413 GVESSRLGLGKGGVTVTSSSSVSQMPGLGLTSLSSSLNTMAGLLSGSTPAPYAQAAAGGT 472
Query: 294 FTPSMGMQWRTGNSFQNQNEPGQFRG--RTEIAPDQREKFXXXXXXXXXXGHSNLLGMPL 351
+ +G+S + P G T + GH L G L
Sbjct: 473 TGGASSGPVGSGSSSAGISIPSGVVGGANTGATSNGTGTGASIGLLGSSPGHGTLTGGIL 532
Query: 352 ----GGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV--TSASLQQQPNPI 405
G + S Q P+ + G + ++GLG + G++ T+ + + P+ +
Sbjct: 533 NLVQGQSALQGSTQVPVSPVGTAPGGG-TGESGLGGNGSSSGVSGGVGTNVAPARPPSGL 591
Query: 406 HQQ--SSQQTLMSGGQKDADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLK 463
Q +S +++ D+ +S L ++
Sbjct: 592 KQNGATSYSAVVADNTPDSSLSSASQSQNSHSSSSSSSTNQTLDNGPSLLSSITLPPSTP 651
Query: 464 APYAIDSSTGVSASLTEPAQVVRDTD 489
+P DS+ G + L P +T+
Sbjct: 652 SPAFTDSTPGGGSLLNGPHSYTPNTE 677
>ASPGD|ASPL0000074489 [details] [associations]
symbol:AN4585 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0006355 EMBL:BN001303 HOGENOM:HOG000184850
OMA:ESIYHLP EnsemblFungi:CADANIAT00005852 Uniprot:C8V7V5
Length = 616
Score = 389 (142.0 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 75/149 (50%), Positives = 98/149 (65%)
Query: 541 QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 600
++L ++ P+P DSE+ R Y P++P TP YPQ I+ +P +E +D TDT
Sbjct: 478 RLLTASAANCPEPGDSEKPRHYKPQNPYNTPLYYPQEPLAILDDPRLYETGRID---TDT 534
Query: 601 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH 660
LF+ FYY+Q +YQQYLAAK LK QSWR+H++Y TWFQRHEEPK +EFEQGTY +FD+
Sbjct: 535 LFYLFYYRQGSYQQYLAAKALKGQSWRFHKQYQTWFQRHEEPKTITEEFEQGTYRFFDY- 593
Query: 661 IANDDLQHGWCQRIKTEFTFEYNYLEDEL 689
+ W R K +F F Y YLEDEL
Sbjct: 594 ------ESTWMNRRKADFKFIYKYLEDEL 616
Score = 102 (41.0 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 59/234 (25%), Positives = 99/234 (42%)
Query: 2 KLELILRLLDNDELSPEQVNDVKDLLEDYVER-NQDDFEEFSDVDELYHLLPL-DKVESL 59
KLEL+LR L N + QV D+K+ ++ YVE NQ D+ + + LY L + D E+
Sbjct: 181 KLELLLRSLQNGNIETSQVVDLKESIKYYVEDGNQIDYA--GEDETLYDDLNMGDDAEAQ 238
Query: 60 EDLVTIGPPGLVKATVISTHQQVTSVQE-QGEDTASQDSNSDVAARTP-PAKSSGVGSTA 117
+ + T ++V + + + E +A+ ++P P ++ S++
Sbjct: 239 FGIGGDNDRVSSQDTQSMQDEEVEAKPKPKAEASATSHRRPSAQMKSPLPVLATLHPSSS 298
Query: 118 STPAVG--PATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSP------PV 169
S+ A G PA P + +P +TL AS + + G+ P +SP P
Sbjct: 299 SSSASGMKPAPPPT-RLPGETLKYASAAAAAAASDKNGVGIAPLPPPPGASPAFPSAVPA 357
Query: 170 NLTSSTKEEDVGNF-PGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXAT-AVPS 221
+ SST V P +++P+ V GR A+ VPS
Sbjct: 358 SKASSTASPVVTLAQPVPKATPAAAIVAEEGRSRTPAFSPKVSAAVSASNTVPS 411
Score = 54 (24.1 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 106 PPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS 165
P A + S+ ++P V A P+ PA + S S V + + S
Sbjct: 352 PSAVPASKASSTASPVVTLAQPVPKATPAAAIVAEEGRSRTPAFSPKVSAAVSASNTVPS 411
Query: 166 SPPVNL--TSSTKEEDVGN 182
+P ++ T+STK N
Sbjct: 412 TPAMDKAETASTKPPAAAN 430
Score = 47 (21.6 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 21/84 (25%), Positives = 27/84 (32%)
Query: 68 PGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATP 127
P + KA ST + GE + + PP + S T A P
Sbjct: 413 PAMDKAETASTKPPAAA---NGESNKENQAGEESIYHLPPGLQDLIHSFEVTKNRASANP 469
Query: 128 ISINVPAQTLSNASNTSPVLPGSS 151
S Q L AS + PG S
Sbjct: 470 SSQPPSVQRLLTASAANCPEPGDS 493
Score = 44 (20.5 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
Identities = 19/84 (22%), Positives = 29/84 (34%)
Query: 101 VAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNT 160
V TP A + TPA P +++ ASNT P P
Sbjct: 374 VPKATPAAAIVAEEGRSRTPAFSPKVSAAVS--------ASNTVPSTPAMDKAETA-STK 424
Query: 161 GPISSSPPVNLTSSTKEEDVGNFP 184
P +++ N + EE + + P
Sbjct: 425 PPAAANGESNKENQAGEESIYHLP 448
>POMBASE|SPAC1B3.05 [details] [associations]
symbol:not3 "CCR4-Not complex subunit Not3/5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
PomBase:SPAC1B3.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006351 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850 PIR:T38023
RefSeq:NP_594789.2 STRING:O13870 EnsemblFungi:SPAC1B3.05.1
GeneID:2542126 OrthoDB:EOG4NW2V3 NextBio:20803198 Uniprot:O13870
Length = 640
Score = 355 (130.0 bits), Expect = 6.8e-38, Sum P(2) = 6.8e-38
Identities = 70/144 (48%), Positives = 88/144 (61%)
Query: 545 SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFA 604
S Y +P D+ + + YIP+ P P YPQ P+ + E + DTLF+
Sbjct: 505 SCVY-VPDATDAAKPQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVD-----PDTLFYM 558
Query: 605 FYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIAND 664
FYY+ TYQQY+A +ELKKQSWR+H+KY TWFQRHEEPK+ DEFE G+Y YFDF D
Sbjct: 559 FYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDFE--GD 616
Query: 665 DLQHGWCQRIKTEFTFEYNYLEDE 688
W QR K +F F Y YLED+
Sbjct: 617 -----WVQRKKADFRFTYQYLEDD 635
Score = 121 (47.7 bits), Expect = 6.8e-38, Sum P(2) = 6.8e-38
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 2 KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLED 61
KLELI+R L+N ++SPE VND+++ + YVE +Q E+F++ + LY L LD+ + D
Sbjct: 181 KLELIMRRLENSQISPEAVNDIQEDIMYYVECSQS--EDFAEDENLYDELNLDEASASYD 238
Query: 62 LVTIGPPGLVK------ATVISTHQQVTSVQEQGEDTASQDSN-SDVAAR 104
G A+ S+ + + + + E+ S D++ D+A +
Sbjct: 239 AERSGRSSSSSHSPSPSASSSSSSENLLQDKAEAEEKVSADASVQDIAEK 288
Score = 49 (22.3 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 86 QEQGEDTASQDSNSDVAARTPPAKSSGVGS-TASTPAVGPATPISIN---VPAQTLSNAS 141
Q+ G + +++ S+V P A +S V + T T P+TP+S++ V + NA+
Sbjct: 314 QKDGAISNNENMQSEVQTTNPSASTSAVTNITKPTLIQNPSTPLSVSNSKVASPETPNAT 373
Query: 142 NTSP----------------VLPGSSSVRGVFDNTGPIS-SSPPVNLTS-STKEEDVGN 182
+T+P + S S + P + +SP +N T +K + +G+
Sbjct: 374 HTAPKVEMRYASAAAAAAAALAKESPSHHYIMQQVRPETPNSPRLNSTVIQSKWDSLGH 432
>UNIPROTKB|H0Y5X7 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H0Y5X7 Ensembl:ENST00000457463 Uniprot:H0Y5X7
Length = 288
Score = 340 (124.7 bits), Expect = 8.5e-33, Sum P(2) = 8.5e-33
Identities = 64/117 (54%), Positives = 79/117 (67%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 142 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 199
Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQ 651
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQ
Sbjct: 200 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQ 253
Score = 47 (21.6 bits), Expect = 8.5e-33, Sum P(2) = 8.5e-33
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 66 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 125
GPP A I + ++S++ E A D + + S+ S P
Sbjct: 56 GPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQ 115
Query: 126 TPIS---INVP 133
P+ +N+P
Sbjct: 116 PPLQLSEVNIP 126
Score = 41 (19.5 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 376 SAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSS 410
SA A G G APG + + P P++ SS
Sbjct: 5 SAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSS 39
Score = 37 (18.1 bits), Expect = 9.5e-32, Sum P(2) = 9.5e-32
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 348 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 388
G L G QFS+ + S S++ +A + G++ P
Sbjct: 51 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 91
>WB|WBGene00003826 [details] [associations]
symbol:ntl-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 328 (120.5 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 74/147 (50%), Positives = 88/147 (59%)
Query: 543 LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA-FWERLSLDSYGTDTL 601
LE A K P DSE+ R+Y+ + P Y Q AP S+ ++ RL+ DTL
Sbjct: 566 LELACAKATFPLDSEKPRNYLSKVSFPVPSWYGQT-APNTSDSLEYYLRLA-----PDTL 619
Query: 602 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHI 661
FF FYY + T Q LAAK LKK SWR+H KY TWFQRHEEPK D++EQGTYVYFDF
Sbjct: 620 FFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQITDDYEQGTYVYFDFE- 678
Query: 662 ANDDLQHGWCQRIKTEFTFEYNYLEDE 688
W QR K FTFEY +LED+
Sbjct: 679 -------KWSQRKKESFTFEYKFLEDK 698
Score = 103 (41.3 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 48/162 (29%), Positives = 77/162 (47%)
Query: 2 KLELILRLLDNDELSPEQVND-VKDLLEDYVER-NQDDFEEFS--DVDELYHLLPLDKVE 57
KLE+ +R++ N+ L+ + V + +K+ +E YVE N++D EE D D+ Y L L+K+
Sbjct: 191 KLEICMRMISNESLNAKMVLETLKEPIETYVEMMNEEDSEEADNYDPDDAYDELNLEKL- 249
Query: 58 SLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAART-----PPAKSSG 112
IG G+ A+V H++ + E G DTA + S + PP+ +
Sbjct: 250 ----CQQIG--GVNVASVDDEHRE--NGHELGIDTAESGAVSGSRHTSGENGQPPSPAGR 301
Query: 113 VGSTASTPAVGPATPISINVPAQTLSNASN--TSPVLPGSSS 152
S P+ TP + A SN T PV P S++
Sbjct: 302 RIVPLSMPSPHAVTP-ELKRLASKDSNVDRPRTPPVTPASAA 342
Score = 78 (32.5 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 33/102 (32%), Positives = 47/102 (46%)
Query: 93 ASQDSNSDVAARTPPA--------------KSSGVGSTASTPAVGPATPISINVPAQTLS 138
AS+DSN D RTPP S G + +TP P+TPIS N PA +L+
Sbjct: 322 ASKDSNVD-RPRTPPVTPASAAPPPPGIPYNSVAAGRSTTTPV--PSTPISANSPAPSLA 378
Query: 139 NASN---TSPVLPGSSSVRGVFDNTGPISSSPPV--NLTSST 175
A+ SPV P +++ +S P ++TS+T
Sbjct: 379 QAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKESITSTT 420
Score = 53 (23.7 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 19 QVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVE-SLEDLVTIGPPGLVKATVIS 77
++ D KD L Y + + E+F DV+ P K+ S E+ + P KA +
Sbjct: 70 EIKD-KDKLNSYRKLIEQRMEQFKDVERENKTKPHSKLGLSAEE--KLDPKEKEKAETMD 126
Query: 78 THQ-QVTSVQEQGEDTASQ 95
Q Q+ S+ E+ + T Q
Sbjct: 127 WIQHQIRSLNEEVDRTEMQ 145
Score = 45 (20.9 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 67 PPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGP 124
PP A+ Q V+ + ++ E S S AA ++ +T+S PA P
Sbjct: 391 PPAAAAASKPVLAQSVSEMPQKKESITSTTSRGSAAAPATTTTTTTT-TTSSEPAEVP 447
Score = 44 (20.5 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 25/113 (22%), Positives = 43/113 (38%)
Query: 68 PGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATP 127
P L +A I+ + V AS+ + + P K S +T+ A PAT
Sbjct: 375 PSLAQAAPIAA---ASPVFPPAAAAASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT- 430
Query: 128 ISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDV 180
+ T S+ P++ +V F N G S + LT +++ +
Sbjct: 431 -TTTTTTTTTSSEPAEVPLVV-QQTVSETFVN-GVDSPAAATRLTQQERQQQL 480
>UNIPROTKB|G5EFX8 [details] [associations]
symbol:ntl-3 "Protein NTL-3, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 328 (120.5 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 74/147 (50%), Positives = 88/147 (59%)
Query: 543 LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA-FWERLSLDSYGTDTL 601
LE A K P DSE+ R+Y+ + P Y Q AP S+ ++ RL+ DTL
Sbjct: 566 LELACAKATFPLDSEKPRNYLSKVSFPVPSWYGQT-APNTSDSLEYYLRLA-----PDTL 619
Query: 602 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHI 661
FF FYY + T Q LAAK LKK SWR+H KY TWFQRHEEPK D++EQGTYVYFDF
Sbjct: 620 FFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQITDDYEQGTYVYFDFE- 678
Query: 662 ANDDLQHGWCQRIKTEFTFEYNYLEDE 688
W QR K FTFEY +LED+
Sbjct: 679 -------KWSQRKKESFTFEYKFLEDK 698
Score = 103 (41.3 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 48/162 (29%), Positives = 77/162 (47%)
Query: 2 KLELILRLLDNDELSPEQVND-VKDLLEDYVER-NQDDFEEFS--DVDELYHLLPLDKVE 57
KLE+ +R++ N+ L+ + V + +K+ +E YVE N++D EE D D+ Y L L+K+
Sbjct: 191 KLEICMRMISNESLNAKMVLETLKEPIETYVEMMNEEDSEEADNYDPDDAYDELNLEKL- 249
Query: 58 SLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAART-----PPAKSSG 112
IG G+ A+V H++ + E G DTA + S + PP+ +
Sbjct: 250 ----CQQIG--GVNVASVDDEHRE--NGHELGIDTAESGAVSGSRHTSGENGQPPSPAGR 301
Query: 113 VGSTASTPAVGPATPISINVPAQTLSNASN--TSPVLPGSSS 152
S P+ TP + A SN T PV P S++
Sbjct: 302 RIVPLSMPSPHAVTP-ELKRLASKDSNVDRPRTPPVTPASAA 342
Score = 78 (32.5 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 33/102 (32%), Positives = 47/102 (46%)
Query: 93 ASQDSNSDVAARTPPA--------------KSSGVGSTASTPAVGPATPISINVPAQTLS 138
AS+DSN D RTPP S G + +TP P+TPIS N PA +L+
Sbjct: 322 ASKDSNVD-RPRTPPVTPASAAPPPPGIPYNSVAAGRSTTTPV--PSTPISANSPAPSLA 378
Query: 139 NASN---TSPVLPGSSSVRGVFDNTGPISSSPPV--NLTSST 175
A+ SPV P +++ +S P ++TS+T
Sbjct: 379 QAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKESITSTT 420
Score = 53 (23.7 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 19 QVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVE-SLEDLVTIGPPGLVKATVIS 77
++ D KD L Y + + E+F DV+ P K+ S E+ + P KA +
Sbjct: 70 EIKD-KDKLNSYRKLIEQRMEQFKDVERENKTKPHSKLGLSAEE--KLDPKEKEKAETMD 126
Query: 78 THQ-QVTSVQEQGEDTASQ 95
Q Q+ S+ E+ + T Q
Sbjct: 127 WIQHQIRSLNEEVDRTEMQ 145
Score = 45 (20.9 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 67 PPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGP 124
PP A+ Q V+ + ++ E S S AA ++ +T+S PA P
Sbjct: 391 PPAAAAASKPVLAQSVSEMPQKKESITSTTSRGSAAAPATTTTTTTT-TTSSEPAEVP 447
Score = 44 (20.5 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 25/113 (22%), Positives = 43/113 (38%)
Query: 68 PGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATP 127
P L +A I+ + V AS+ + + P K S +T+ A PAT
Sbjct: 375 PSLAQAAPIAA---ASPVFPPAAAAASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT- 430
Query: 128 ISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDV 180
+ T S+ P++ +V F N G S + LT +++ +
Sbjct: 431 -TTTTTTTTTSSEPAEVPLVV-QQTVSETFVN-GVDSPAAATRLTQQERQQQL 480
>ZFIN|ZDB-GENE-030131-5838 [details] [associations]
symbol:cnot3b "CCR4-NOT transcription complex,
subunit 3b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-030131-5838 GO:GO:0005634 GO:GO:0006355
HOVERGEN:HBG051042 KO:K12580 EMBL:BC045499 IPI:IPI00859465
RefSeq:NP_956134.1 UniGene:Dr.6354 ProteinModelPortal:Q7ZVL4
STRING:Q7ZVL4 PRIDE:Q7ZVL4 GeneID:327627 KEGG:dre:327627 CTD:327627
InParanoid:Q7ZVL4 NextBio:20810115 ArrayExpress:Q7ZVL4 Bgee:Q7ZVL4
Uniprot:Q7ZVL4
Length = 908
Score = 235 (87.8 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 48/95 (50%), Positives = 61/95 (64%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
DQ+Y M ESA+ +P P DSER R Y+ R+P T P + Q+ P + F++RLS
Sbjct: 742 DQLYQQAMQESAWAHMPHPSDSERIRQYLMRNPCPTLPFHHQMPPPHSDSVEFYQRLS-- 799
Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 629
T+TLFF FYY + T QYLAAK LKKQSWR+H
Sbjct: 800 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFH 831
Score = 118 (46.6 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 43/203 (21%), Positives = 93/203 (45%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--EL-YHLLPLD 54
LE ILR+LDND + + + +KD +E Y++ +QD DFEE + D+D E+ ++P
Sbjct: 183 LETILRMLDNDSIQVDSIRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEEIPLPVVPTS 242
Query: 55 KVESLEDLV----TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKS 110
+D + + P ++ I + + E ++S+++ ++P
Sbjct: 243 PAGHPDDEIFQHSSSTPTSTTSSSPIPPSPATCTTNSEDEKKRGHSTDSEIS-QSPIKNG 301
Query: 111 SGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRG----VFDNTGPISSS 166
+ S +S+ ++ ++ + ++ +++ +++ GSSS+ G N+G SS+
Sbjct: 302 NQSSSLSSSSSLSSSSSGASSISLISMATLASSGSSASGSSSLLGNISVPLQNSGSYSSA 361
Query: 167 PPVNLTSSTKEEDVGNFPGRRSS 189
S ++ N S+
Sbjct: 362 TQQQTQQSQQQHQPKNSASSHSN 384
Score = 88 (36.0 bits), Expect = 4.8e-20, Sum P(3) = 4.8e-20
Identities = 55/238 (23%), Positives = 96/238 (40%)
Query: 77 STHQQVTSVQEQGE--DTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPA 134
+T QQ Q+Q + ++AS SNS A+ + +S S +T +GP TP S +
Sbjct: 361 ATQQQTQQSQQQHQPKNSASSHSNSTSASNSILLPTSASTSPPNTSTLGPLTPSSQSQTN 420
Query: 135 QTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD 194
+S +S+ + G+S++ G + S P +L+ G+ P + +
Sbjct: 421 LGMSLSSSLG-LGKGTSALTGTNQMPSLVLSGMPASLSGFLS----GSTPAPYAQAAAAG 475
Query: 195 VRVMGRGGXXXXXXXXXXXXXA-TAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQ 253
G T++ +NG+LG+ L+ + ILG LGS+
Sbjct: 476 CVGSGLSSAIGTNISSTNSSGVVTSLGTNGSLGSTSLLGSGS--GILG----LGSTFAAV 529
Query: 254 SLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMA---GRVFTPSMGMQWRTGNSF 308
+ L+ + S G++ G I S+ A A G P G + G+S+
Sbjct: 530 EPLPLLAPSPVGSTLTSGSN-VGVIGSSGGTSGTANATGSGTQPRPPSGPKQNGGSSY 586
Score = 67 (28.6 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 36/153 (23%), Positives = 55/153 (35%)
Query: 257 SPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNE-PG 315
S LS+ LS ++ G I T+A +G + S + QN
Sbjct: 305 SSLSSSSSLSSSSSGASSISLISM----ATLASSGSSASGSSSLLGNISVPLQNSGSYSS 360
Query: 316 QFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQ--FSSQQNPLLQQFNSQ-- 371
+ +T+ + Q + SN + +P + +S PL SQ
Sbjct: 361 ATQQQTQQSQQQHQPKNSASSHSNSTSASNSILLPTSASTSPPNTSTLGPLTPSSQSQTN 420
Query: 372 -GSSISAQAGLGLGVQA-PGMNSVTSASLQQQP 402
G S+S+ GLG G A G N + S L P
Sbjct: 421 LGMSLSSSLGLGKGTSALTGTNQMPSLVLSGMP 453
Score = 53 (23.7 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 370 SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 412
S GSS S + L + P NS + +S QQ QQS QQ
Sbjct: 333 SSGSSASGSSSLLGNISVPLQNSGSYSSATQQQT---QQSQQQ 372
Score = 50 (22.7 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 29/143 (20%), Positives = 60/143 (41%)
Query: 58 SLEDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTA 117
++E L + P + + +++ V + G + + ++ PP+ G ++
Sbjct: 528 AVEPLPLLAPSPV--GSTLTSGSNVGVIGSSGGTSGTANATGSGTQPRPPSGPKQNGGSS 585
Query: 118 STPAVGPATPIS-INVPAQTLSNASN------TSPVLPGSSSVRGVFDNTGPISSSPPVN 170
+ VG +T S +N +Q+ ++ S+ T+ ++ SS+ G P SS PV
Sbjct: 586 YSAVVGDSTSDSALNSASQSQNSQSSSLNLAVTNQLMDSGSSLLGSM-TLAP-SSPSPVY 643
Query: 171 LTSSTKEEDVGNFPGRRSSPSLT 193
S + N P + P+ T
Sbjct: 644 SESKAGGGSLLNGPHSYTQPADT 666
Score = 43 (20.2 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 353 GNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQ-QQPNPIHQQS 409
G+ S N Q NSQ SS++ L G + + S +L P+P++ +S
Sbjct: 591 GDSTSDSALNSASQSQNSQSSSLNLAVTNQL--MDSGSSLLGSMTLAPSSPSPVYSES 646
>CGD|CAL0002492 [details] [associations]
symbol:NOT5 species:5476 "Candida albicans" [GO:0030445
"yeast-form cell wall" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0016337 "cell-cell adhesion" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030015 "CCR4-NOT core
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 CGD:CAL0002492
GO:GO:0005634 GO:GO:0030445 GO:GO:0071216 GO:GO:0036180
GO:GO:0009405 GO:GO:0006355 GO:GO:0016337 EMBL:AACQ01000053
EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1 RefSeq:XP_717644.1
STRING:Q5A755 GeneID:3640763 GeneID:3640828 KEGG:cal:CaO19.12573
KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 172 (65.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 53/183 (28%), Positives = 91/183 (49%)
Query: 2 KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLED 61
KLE +L LDND+L P +++D+KD L+ YVE NQD E++ + DE Y L +D+ + +E
Sbjct: 185 KLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQD--EDYVEYDEFYDQLEVDEEDDVE- 241
Query: 62 LVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPA 121
V+ ++ + + + E+ ++ + + PP SS V S++S+
Sbjct: 242 ---------VQGSLAQMAAETEDERRRDEERKREEKEKEKQQQNPPRTSSSVSSSSSSNQ 292
Query: 122 --VG----PATPISINV-PAQTLSNASNTSPVLPGSSS--VRGVFDNTGPISSSPPVNLT 172
+G PAT I +V + + +N S S+S V+ + P + PP+ T
Sbjct: 293 NNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKLKPTLAPAPAPPPI--T 350
Query: 173 SST 175
S T
Sbjct: 351 SGT 353
Score = 134 (52.2 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 542 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS-NPAFWERLSLDSYGTDT 600
+LE++ P D+E+ R Y P + V P S Q P+ N + + + + DT
Sbjct: 493 LLETSLLNCPDSYDAEKPRQYNPVN--VHPSSIDYPQEPMYELNSSHY----MKKFDNDT 546
Query: 601 LFFAFYYQQ--NTYQQYLAAKELKKQSWRYHRKYNTWFQR 638
LFF FYY ++ +Y AAKEL ++ W ++ +++ WF +
Sbjct: 547 LFFCFYYGDGIDSISKYNAAKELSRRGWVFNTEFSQWFSK 586
Score = 62 (26.9 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 31/139 (22%), Positives = 54/139 (38%)
Query: 162 PISSSPPVNLTSSTKEEDVGNF--PGRRSSPSLTDVRVMG-RGGXXXXXXXXXXXXXATA 218
P +S V+ +SS+ + ++GN P + PS+ V +G +
Sbjct: 277 PPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKL 336
Query: 219 VPSNGNLGAVP-LVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGS 277
P+ A P + S + N + A + +S S ++ +N + KGN
Sbjct: 337 KPTLAPAPAPPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDN--NNTNKGNRSVSP 394
Query: 278 IDSNNAGETVAMAGRVFTP 296
+ S + T A A V TP
Sbjct: 395 LASTD-NHTHAPAA-VSTP 411
Score = 46 (21.3 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 273 DGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNS 307
DG SI NA + ++ G VF QW + +S
Sbjct: 555 DGIDSISKYNAAKELSRRGWVFNTEFS-QWFSKDS 588
Score = 43 (20.2 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 133 PAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSL 192
P +T S+ S++S SS+ + +NT P + P +T + + N SS S
Sbjct: 277 PPRTSSSVSSSS-----SSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTS- 330
Query: 193 TDVR 196
T V+
Sbjct: 331 TPVK 334
>UNIPROTKB|Q5A755 [details] [associations]
symbol:NOT5 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Not5p" species:237561 "Candida albicans SC5314"
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016337 "cell-cell
adhesion" evidence=IMP] [GO:0030445 "yeast-form cell wall"
evidence=IDA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
CGD:CAL0002492 GO:GO:0005634 GO:GO:0030445 GO:GO:0071216
GO:GO:0036180 GO:GO:0009405 GO:GO:0006355 GO:GO:0016337
EMBL:AACQ01000053 EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1
RefSeq:XP_717644.1 STRING:Q5A755 GeneID:3640763 GeneID:3640828
KEGG:cal:CaO19.12573 KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 172 (65.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 53/183 (28%), Positives = 91/183 (49%)
Query: 2 KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLED 61
KLE +L LDND+L P +++D+KD L+ YVE NQD E++ + DE Y L +D+ + +E
Sbjct: 185 KLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQD--EDYVEYDEFYDQLEVDEEDDVE- 241
Query: 62 LVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPA 121
V+ ++ + + + E+ ++ + + PP SS V S++S+
Sbjct: 242 ---------VQGSLAQMAAETEDERRRDEERKREEKEKEKQQQNPPRTSSSVSSSSSSNQ 292
Query: 122 --VG----PATPISINV-PAQTLSNASNTSPVLPGSSS--VRGVFDNTGPISSSPPVNLT 172
+G PAT I +V + + +N S S+S V+ + P + PP+ T
Sbjct: 293 NNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKLKPTLAPAPAPPPI--T 350
Query: 173 SST 175
S T
Sbjct: 351 SGT 353
Score = 134 (52.2 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 542 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS-NPAFWERLSLDSYGTDT 600
+LE++ P D+E+ R Y P + V P S Q P+ N + + + + DT
Sbjct: 493 LLETSLLNCPDSYDAEKPRQYNPVN--VHPSSIDYPQEPMYELNSSHY----MKKFDNDT 546
Query: 601 LFFAFYYQQ--NTYQQYLAAKELKKQSWRYHRKYNTWFQR 638
LFF FYY ++ +Y AAKEL ++ W ++ +++ WF +
Sbjct: 547 LFFCFYYGDGIDSISKYNAAKELSRRGWVFNTEFSQWFSK 586
Score = 62 (26.9 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 31/139 (22%), Positives = 54/139 (38%)
Query: 162 PISSSPPVNLTSSTKEEDVGNF--PGRRSSPSLTDVRVMG-RGGXXXXXXXXXXXXXATA 218
P +S V+ +SS+ + ++GN P + PS+ V +G +
Sbjct: 277 PPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKL 336
Query: 219 VPSNGNLGAVP-LVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGS 277
P+ A P + S + N + A + +S S ++ +N + KGN
Sbjct: 337 KPTLAPAPAPPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDN--NNTNKGNRSVSP 394
Query: 278 IDSNNAGETVAMAGRVFTP 296
+ S + T A A V TP
Sbjct: 395 LASTD-NHTHAPAA-VSTP 411
Score = 46 (21.3 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 273 DGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNS 307
DG SI NA + ++ G VF QW + +S
Sbjct: 555 DGIDSISKYNAAKELSRRGWVFNTEFS-QWFSKDS 588
Score = 43 (20.2 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 133 PAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSL 192
P +T S+ S++S SS+ + +NT P + P +T + + N SS S
Sbjct: 277 PPRTSSSVSSSS-----SSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTS- 330
Query: 193 TDVR 196
T V+
Sbjct: 331 TPVK 334
>UNIPROTKB|F1RNH3 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580 OMA:IFYYLEP
GeneTree:ENSGT00390000014743 EMBL:FP476135 RefSeq:XP_003356092.1
Ensembl:ENSSSCT00000003625 GeneID:100520963 KEGG:ssc:100520963
Uniprot:F1RNH3
Length = 719
Score = 169 (64.5 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 611 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 668
Query: 595 SYGTDTLFFAFYY 607
T+TLFF FYY
Sbjct: 669 ---TETLFFIFYY 678
Score = 124 (48.7 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 55/208 (26%), Positives = 86/208 (41%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--ELYHLLPLDK 55
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D ++ L
Sbjct: 183 LETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVATS 242
Query: 56 VES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSDVAARTPPAK 109
S +ED + +T S+ E ED + ++D PAK
Sbjct: 243 PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAK 302
Query: 110 SSGVGSTASTPAVGPATPISI-NVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPP 168
+ ++ PA P S + P T S A +T+P G+ + GP +S P
Sbjct: 303 NGSKPVHSNQHPQSPAVPPSYPSGPPPTAS-ALSTTPGNNGAPAPAAPASALGPKASPAP 361
Query: 169 VNLTSSTKEEDVGNFPGRRSSPSLTDVR 196
+ + + P S PS R
Sbjct: 362 SHNSGTPAPYAQAVAPPAPSGPSTAQPR 389
Score = 76 (31.8 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 30/88 (34%), Positives = 40/88 (45%)
Query: 97 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 149
S S V A +P A SS G+T S+ A+GP + N P T S +P V PG
Sbjct: 429 SYSSVVADSPAEVALSSSGGNTTSSQALGPPSGPH-NPPPSTSKEPSAAAPTGAGGVAPG 487
Query: 150 SSSVRGVFDNTGPISSSPPVNLTSSTKE 177
S + G P+ +PP + T S E
Sbjct: 488 SGNNSGGPSLLVPLPVNPPSSPTPSFSE 515
Score = 47 (21.6 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 352 GGNKQFSSQQNPLLQQFN---SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQ 408
GGN S P N S SA A G G APG + + P P++
Sbjct: 447 GGNTTSSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPP 506
Query: 409 SS 410
SS
Sbjct: 507 SS 508
Score = 47 (21.6 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 66 GPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPA 125
GPP A I + ++S++ E A D + + S+ S P
Sbjct: 525 GPPQFSAAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQ 584
Query: 126 TPIS---INVP 133
P+ +N+P
Sbjct: 585 PPLQLSEVNIP 595
Score = 45 (20.9 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 15/59 (25%), Positives = 21/59 (35%)
Query: 73 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 131
+ V + +V G T+SQ PP +S S A+ G P S N
Sbjct: 432 SVVADSPAEVALSSSGGNTTSSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGN 490
>UNIPROTKB|H7C5J4 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C5J4 Ensembl:ENST00000471126 Bgee:H7C5J4
Uniprot:H7C5J4
Length = 88
Score = 195 (73.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 45/83 (54%), Positives = 48/83 (57%)
Query: 614 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQ-GTYVYFDFHIANDDLQ----- 667
QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQ ++ A Q
Sbjct: 2 QYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQIPDHLLVHSLTAFSPGQGTYIY 61
Query: 668 ---HGWCQRIKTEFTFEYNYLED 687
W QR K FTFEY YLED
Sbjct: 62 FDYEKWGQRKKEGFTFEYRYLED 84
>SGD|S000006276 [details] [associations]
symbol:NOT5 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IPI] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0016567 "protein
ubiquitination" evidence=IMP] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IDA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 SGD:S000006276
GO:GO:0005634 GO:GO:0005737 GO:GO:0016567 EMBL:Z71255 EMBL:BK006949
GO:GO:0006368 EMBL:U51033 EMBL:Z49219 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850
GeneTree:ENSGT00390000014743 GO:GO:0031087 OrthoDB:EOG4NW2V3
EMBL:AY692887 PIR:S54093 RefSeq:NP_015397.1
ProteinModelPortal:Q12514 DIP:DIP-2257N IntAct:Q12514
MINT:MINT-420084 STRING:Q12514 PaxDb:Q12514 PeptideAtlas:Q12514
EnsemblFungi:YPR072W GeneID:856186 KEGG:sce:YPR072W CYGD:YPR072w
OMA:HPTSIFF NextBio:981366 Genevestigator:Q12514 GermOnline:YPR072W
Uniprot:Q12514
Length = 560
Score = 123 (48.4 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 596 YGTDTLFFAFYYQQNTYQQYLAAKEL-KKQSWRYHRKYNTWFQRH-EEPKVANDEFEQGT 653
+ DTLFF FY+ Q +Y+Q+LAA+EL K ++W +++ W+ + E+ + E+ +
Sbjct: 472 FDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKSEEES 531
Query: 654 YVYFDF 659
+ YFD+
Sbjct: 532 WRYFDY 537
Score = 110 (43.8 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 41/142 (28%), Positives = 65/142 (45%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDL 62
LE IL+ L N+E+ PE V + +D ++ YVE N D +F + D +Y + + S +
Sbjct: 164 LENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDP--DFIEYDTIYEDMGCEIQPSSSN- 220
Query: 63 VTIGPPGLVKATVISTHQQVTSVQEQGEDTASQ-DSNSDVAARTP--PAKSSGVGSTAST 119
P T +S+ + + + A Q D + A TP P S S +ST
Sbjct: 221 -NEAPKEGNNQTSLSSIRSSKKQERSPKKKAPQRDVSISDRATTPIAPGVESASQSISST 279
Query: 120 PAVGPATPISINVPAQTLSNAS 141
P TP+S + P T+ + S
Sbjct: 280 P-----TPVSTDTPLHTVKDDS 296
Score = 53 (23.7 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 15 LSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKAT 74
LS E V D + +L ++ E F V++L K E+L + I P +K
Sbjct: 67 LSKEDVKDKQSVLMTNRRLIENGMERFKSVEKLMKTKQFSK-EALTNPDIIKDPKELKKR 125
Query: 75 --VISTHQQVTSVQEQGEDTASQDS 97
V+ H + +Q+Q E +Q++
Sbjct: 126 DQVLFIHDCLDELQKQLEQYEAQEN 150
>CGD|CAL0005191 [details] [associations]
symbol:orf19.6075 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030015 "CCR4-NOT core complex" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0051726 "regulation of cell
cycle" evidence=IEA] [GO:0000749 "response to pheromone involved in
conjugation with cellular fusion" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 CGD:CAL0005191 GO:GO:0005634
GO:GO:0006355 EMBL:AACQ01000036 EMBL:AACQ01000035 eggNOG:COG5601
HOGENOM:HOG000246523 KO:K12605 RefSeq:XP_718935.1
RefSeq:XP_719037.1 STRING:Q5AB95 GeneID:3639296 GeneID:3639453
KEGG:cal:CaO19.13496 KEGG:cal:CaO19.6075 Uniprot:Q5AB95
Length = 182
Score = 157 (60.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 593 LDSYGTDTLFFAFYYQ-QNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEF 649
+ ++ +TLF+ FY + ++T Q+Y AA+EL ++WRYH+ W + EP + N +
Sbjct: 95 IQNFTDETLFYIFYMKPRDTLQEY-AARELVARNWRYHKGIQVWLTKDSNVEPVLINPDV 153
Query: 650 EQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 686
E+G Y++FD H W ++IK EF Y+ ++
Sbjct: 154 EKGVYIFFD--------PHNW-EKIKKEFVLHYSLVQ 181
>UNIPROTKB|F1MID5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000001285 EMBL:DAAA02013212 EMBL:DAAA02013213
EMBL:DAAA02013214 EMBL:DAAA02013215 IPI:IPI00905002
UniGene:Bt.30639 Ensembl:ENSBTAT00000057053 ArrayExpress:F1MID5
Uniprot:F1MID5
Length = 403
Score = 153 (58.9 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 297 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 356
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 357 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 386
Score = 59 (25.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 31/112 (27%), Positives = 43/112 (38%)
Query: 86 QEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS--TPAVGPATPISI-----NVPAQTLS 138
Q+ G + + SD A + G G+ P G A + + N +Q S
Sbjct: 78 QQNGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFS 137
Query: 139 NASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEEDVGNFPGRRSS 189
+ P LPGSS N S+ + TSST D FPG +SS
Sbjct: 138 IHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST---DGPKFPGDKSS 186
>UNIPROTKB|F1M3V0 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00949675 Ensembl:ENSRNOT00000064732
ArrayExpress:F1M3V0 Uniprot:F1M3V0
Length = 493
Score = 153 (58.9 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 387 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 446
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 447 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 476
Score = 60 (26.2 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 120 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 178
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 210 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 265
Query: 179 DVGNFPGRRSS 189
D FPG +SS
Sbjct: 266 DGPKFPGDKSS 276
Score = 54 (24.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 342 GHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ 401
G + LG+P+ G S P L + SQG+ + + GV +++ S S
Sbjct: 30 GQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGIL 85
Query: 402 P-NPIHQQSSQQ 412
P NP + + Q
Sbjct: 86 PMNPRNMMNHSQ 97
Score = 41 (19.5 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 64 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 121
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 66 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 125
Query: 122 V 122
+
Sbjct: 126 I 126
>UNIPROTKB|F1SH40 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:CU467026
Ensembl:ENSSSCT00000000541 Uniprot:F1SH40
Length = 541
Score = 154 (59.3 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 41/123 (33%), Positives = 58/123 (47%)
Query: 567 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 626
P + P Y IV A + L YG D LF+ +Y Q LAA EL + W
Sbjct: 414 PFLMPIEYVTTVIHIVFQLA---AIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDW 470
Query: 627 RYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNY 684
RYH++ W R EP + + +E+GTY +FD N W +++ EF EY+
Sbjct: 471 RYHKEERVWITRAPGMEPTMKTNTYERGTYYFFD--CLN------W-RKVAKEFHLEYDK 521
Query: 685 LED 687
LE+
Sbjct: 522 LEE 524
Score = 61 (26.5 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 273 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 329
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 330 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 389
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 390 MNSVTSASLQQQP-NPIHQQSSQQ 412
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 59 (25.8 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 24/70 (34%), Positives = 30/70 (42%)
Query: 120 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEED 179
P VG T + N +Q S + P LPGSS N S+ TSS+ D
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTSSST--D 313
Query: 180 VGNFPGRRSS 189
FPG +SS
Sbjct: 314 GPKFPGDKSS 323
Score = 42 (19.8 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 64 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGSTA-STPA 121
T G P + T S + + + + SQ + +RT SSG+GS + S+P+
Sbjct: 113 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPSRSSPS 172
Query: 122 V 122
+
Sbjct: 173 I 173
>MGI|MGI:1919318 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010606 "positive
regulation of cytoplasmic mRNA processing body assembly"
evidence=ISO] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:2000036 "regulation of stem
cell maintenance" evidence=ISO] InterPro:IPR007282 Pfam:PF04153
MGI:MGI:1919318 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 CTD:4848 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
ChiTaRS:CNOT2 EMBL:AK011231 EMBL:AK078121 EMBL:AK149767
EMBL:BC043133 EMBL:BC063105 EMBL:BC065171 IPI:IPI00132821
IPI:IPI00410747 IPI:IPI00410748 RefSeq:NP_001032935.2
RefSeq:NP_001032936.2 RefSeq:NP_001032937.1 RefSeq:NP_082358.2
UniGene:Mm.351553 ProteinModelPortal:Q8C5L3 STRING:Q8C5L3
PhosphoSite:Q8C5L3 PaxDb:Q8C5L3 PRIDE:Q8C5L3
Ensembl:ENSMUST00000105265 Ensembl:ENSMUST00000105267
Ensembl:ENSMUST00000169921 GeneID:72068 KEGG:mmu:72068
UCSC:uc007hca.2 UCSC:uc007hcb.2 UCSC:uc007hcd.2
GeneTree:ENSGT00390000001285 InParanoid:Q8C5L3 NextBio:335352
Bgee:Q8C5L3 CleanEx:MM_CNOT2 Genevestigator:Q8C5L3
GermOnline:ENSMUSG00000020166 Uniprot:Q8C5L3
Length = 540
Score = 153 (58.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 273 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 329
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 330 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 389
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 390 MNSVTSASLQQQP-NPIHQQSSQQ 412
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 60 (26.2 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 120 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 178
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 312
Query: 179 DVGNFPGRRSS 189
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 41 (19.5 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 64 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 121
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 113 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 172
Query: 122 V 122
+
Sbjct: 173 I 173
>UNIPROTKB|E2QSF5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
CTD:4848 KO:K12605 OMA:TQDFSIH GeneTree:ENSGT00390000001285
EMBL:AAEX03007054 EMBL:AAEX03007055 RefSeq:XP_850576.1
Ensembl:ENSCAFT00000000701 GeneID:474446 KEGG:cfa:474446
NextBio:20850458 Uniprot:E2QSF5
Length = 540
Score = 153 (58.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 273 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 329
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 330 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 389
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 390 MNSVTSASLQQQP-NPIHQQSSQQ 412
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 57 (25.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 120 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 178
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 179 DVGNFPGRRSS 189
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 41 (19.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 64 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 121
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 113 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 172
Query: 122 V 122
+
Sbjct: 173 I 173
>UNIPROTKB|Q9NZN8 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=TAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0010606 "positive regulation
of cytoplasmic mRNA processing body assembly" evidence=IMP]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0001226 "RNA polymerase
II transcription corepressor binding" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:2000036 "regulation of stem cell
maintenance" evidence=IMP] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR007282
Pfam:PF04153 GO:GO:0005829 GO:GO:0005634 GO:GO:0000289
GO:GO:0001104 EMBL:AF180473 EMBL:AF113226 EMBL:AF161480
EMBL:AK000662 EMBL:AL137674 EMBL:BX641116 EMBL:BC002597
EMBL:BC011826 EMBL:AF044215 IPI:IPI00005011 IPI:IPI00017733
IPI:IPI00410621 IPI:IPI00410622 IPI:IPI00410623 PIR:T46494
RefSeq:NP_001186231.1 RefSeq:NP_001186232.1 RefSeq:NP_055330.1
UniGene:Hs.133350 UniGene:Hs.730666 ProteinModelPortal:Q9NZN8
DIP:DIP-42656N IntAct:Q9NZN8 MINT:MINT-1438957 STRING:Q9NZN8
PhosphoSite:Q9NZN8 DMDM:46396017 PaxDb:Q9NZN8 PRIDE:Q9NZN8
DNASU:4848 Ensembl:ENST00000229195 Ensembl:ENST00000418359
Ensembl:ENST00000551043 Ensembl:ENST00000551483 GeneID:4848
KEGG:hsa:4848 UCSC:uc001svv.3 UCSC:uc001svw.1 CTD:4848
GeneCards:GC12P070636 HGNC:HGNC:7878 MIM:604909 neXtProt:NX_Q9NZN8
PharmGKB:PA26673 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 InParanoid:Q9NZN8 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV PhylomeDB:Q9NZN8 ChiTaRS:CNOT2 GenomeRNAi:4848
NextBio:18670 ArrayExpress:Q9NZN8 Bgee:Q9NZN8 CleanEx:HS_CNOT2
Genevestigator:Q9NZN8 GermOnline:ENSG00000111596 Uniprot:Q9NZN8
Length = 540
Score = 153 (58.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 273 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 329
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 330 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 389
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 390 MNSVTSASLQQQP-NPIHQQSSQQ 412
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 57 (25.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 120 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 178
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 179 DVGNFPGRRSS 189
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 41 (19.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 64 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 121
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 113 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 172
Query: 122 V 122
+
Sbjct: 173 I 173
>UNIPROTKB|F1LY92 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00366212 Ensembl:ENSRNOT00000006779
ArrayExpress:F1LY92 Uniprot:F1LY92
Length = 531
Score = 153 (58.9 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 425 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 484
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 485 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 514
Score = 60 (26.2 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 120 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 178
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 248 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 303
Query: 179 DVGNFPGRRSS 189
D FPG +SS
Sbjct: 304 DGPKFPGDKSS 314
Score = 56 (24.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 294 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 353
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 20 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 79
Query: 354 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 412
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 80 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 135
Score = 41 (19.5 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 64 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 121
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 104 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 163
Query: 122 V 122
+
Sbjct: 164 I 164
>UNIPROTKB|F1LUT7 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00734620 Ensembl:ENSRNOT00000058355
ArrayExpress:F1LUT7 Uniprot:F1LUT7
Length = 549
Score = 153 (58.9 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 443 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 502
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 503 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 532
Score = 61 (26.5 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 273 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 329
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 14 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 73
Query: 330 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 389
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 74 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 129
Query: 390 MNSVTSASLQQQP-NPIHQQSSQQ 412
+++ S S P NP + + Q
Sbjct: 130 LHTPPSPSRGILPMNPRNMMNHSQ 153
Score = 60 (26.2 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 120 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 178
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 266 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 321
Query: 179 DVGNFPGRRSS 189
D FPG +SS
Sbjct: 322 DGPKFPGDKSS 332
Score = 41 (19.5 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 64 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 121
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 122 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 181
Query: 122 V 122
+
Sbjct: 182 I 182
>SGD|S000002324 [details] [associations]
symbol:CDC36 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0051726 "regulation of cell cycle"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0031087 "deadenylation-independent decapping
of nuclear-transcribed mRNA" evidence=IMP] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0000749 "response to pheromone
involved in conjugation with cellular fusion" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IGI;IMP;IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IMP] [GO:0016567
"protein ubiquitination" evidence=IMP] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 SGD:S000002324
GO:GO:0005634 GO:GO:0005737 EMBL:BK006938 GO:GO:0016567
GO:GO:0000122 GO:GO:0051726 GO:GO:0006368 EMBL:Z67750 GO:GO:0032968
GO:GO:0000289 GO:GO:0030015 eggNOG:COG5601 HOGENOM:HOG000246523
KO:K12605 GeneTree:ENSGT00390000001285 GO:GO:0031087 EMBL:X03246
EMBL:X68020 GO:GO:0000749 OrthoDB:EOG4TB7MJ EMBL:X04287 EMBL:Z74213
EMBL:AY557644 PIR:S12304 RefSeq:NP_010116.1
ProteinModelPortal:P06100 DIP:DIP-590N IntAct:P06100
MINT:MINT-400720 STRING:P06100 PaxDb:P06100 PeptideAtlas:P06100
EnsemblFungi:YDL165W GeneID:851389 KEGG:sce:YDL165W CYGD:YDL165w
OMA:WAETSRS NextBio:968543 Genevestigator:P06100 GermOnline:YDL165W
Uniprot:P06100
Length = 191
Score = 143 (55.4 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 50/153 (32%), Positives = 77/153 (50%)
Query: 519 IGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYI-PRHPAVTPPSY--- 574
+G LS S G D + ++L++ ++ P +E +RS + PR TP S+
Sbjct: 30 LGADLSSMLYSLGIPRDSQ-DHRVLDT--FQSPW---AETSRSEVEPRF--FTPESFTNI 81
Query: 575 PQVQAPIVSNPAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRY 628
P V V+ P F +R++L + +TLFF FY T Q L EL+K++WRY
Sbjct: 82 PGVLQSTVTPPCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRY 139
Query: 629 HRKYNTWFQRHE--EPKVANDEF-EQGTYVYFD 658
H+ W + EP V+ D E+G+YV+FD
Sbjct: 140 HKTLKAWLTKDPMMEPIVSADGLSERGSYVFFD 172
>UNIPROTKB|H0YHT6 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7878 ChiTaRS:CNOT2 EMBL:AC025569
EMBL:AC092881 Ensembl:ENST00000551710 Bgee:H0YHT6 Uniprot:H0YHT6
Length = 104
Score = 142 (55.0 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 17 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 76
Query: 649 FEQGTYVYFD 658
+E+GTY +FD
Sbjct: 77 YERGTYYFFD 86
>UNIPROTKB|F8VV52 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 IPI:IPI00017733 HGNC:HGNC:7878 ChiTaRS:CNOT2
EMBL:AC025569 EMBL:AC092881 PRIDE:F8VV52 Ensembl:ENST00000548159
ArrayExpress:F8VV52 Bgee:F8VV52 Uniprot:F8VV52
Length = 531
Score = 153 (58.9 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 425 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 484
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 485 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 514
Score = 57 (25.1 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 120 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 178
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 248 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 303
Query: 179 DVGNFPGRRSS 189
D FPG +SS
Sbjct: 304 DGPKFPGDKSS 314
Score = 56 (24.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 294 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 353
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 20 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 79
Query: 354 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 412
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 80 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 135
Score = 41 (19.5 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 64 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 121
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 104 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 163
Query: 122 V 122
+
Sbjct: 164 I 164
>UNIPROTKB|E1BCE7 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:DAAA02013212
EMBL:DAAA02013213 EMBL:DAAA02013214 EMBL:DAAA02013215
IPI:IPI00692269 Ensembl:ENSBTAT00000004880 ArrayExpress:E1BCE7
Uniprot:E1BCE7
Length = 540
Score = 153 (58.9 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 57 (25.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 120 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 178
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 179 DVGNFPGRRSS 189
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 56 (24.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 294 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 353
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 29 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 88
Query: 354 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 412
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 89 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 41 (19.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 64 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 121
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 113 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 172
Query: 122 V 122
+
Sbjct: 173 I 173
>ZFIN|ZDB-GENE-070410-70 [details] [associations]
symbol:zgc:162316 "zgc:162316" species:7955 "Danio
rerio" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 ZFIN:ZDB-GENE-070410-70
GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
GeneTree:ENSGT00390000001285 EMBL:CR376836 EMBL:CR382363
EMBL:BC134959 IPI:IPI00799285 RefSeq:NP_001082993.1
UniGene:Dr.78739 STRING:A4QN63 Ensembl:ENSDART00000088383
GeneID:100037372 KEGG:dre:100037372 InParanoid:A4QN63
NextBio:20788534 Uniprot:A4QN63
Length = 520
Score = 162 (62.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 414 IKLGRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNT 473
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+GTY +FD H W +++ EF EY+ LE+
Sbjct: 474 YERGTYYFFDCH--------NW-RKVAKEFHLEYDKLEE 503
Score = 46 (21.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 39/192 (20%), Positives = 70/192 (36%)
Query: 105 TPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVF--DNTGP 162
+P SSG S GP + + ++ SN +P L S +G ++ P
Sbjct: 40 SPSPSSSGQLSQLGASLYGPQSALGFSIRGM-----SNNNPQL-NRSLTQGTQLPSHSTP 93
Query: 163 ISSSPPVNLTSSTKEEDVGNFP-GRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPS 221
+ P ++L ++ + G P R+ S + MG G + PS
Sbjct: 94 TTGVPTMSLHTTPPSPNRGILPMNTRNMMSSQVGQGMGMSGRTNSMGSSGLGSPNRSSPS 153
Query: 222 NGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL-VSPLSNRMILSQAAKGNDGTGSIDS 280
+ +P + + + G G Q ++ LSN + G DG+ ++
Sbjct: 154 ---IICMPKQQPARQPFTINSMSGFGM-GRSQGFGMNSLSNNIF-----NGTDGSENVTG 204
Query: 281 NNAGETVAMAGR 292
+ E A+A R
Sbjct: 205 IDLSEFPALADR 216
Score = 42 (19.8 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 60 EDLVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSS 111
ED + P K +ST + +S+ G+ ++S D +T A+++
Sbjct: 258 EDFPALPGPNY-KDPTLSTDESKSSLNSSGKGSSSADGPKFPGDKTSSAQNN 308
Score = 42 (19.8 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 22/123 (17%), Positives = 48/123 (39%)
Query: 296 PSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNK 355
P M + + FQ+++E + + Q + G + LG + G
Sbjct: 17 PDESMYYNQASMFQHRSEKDMLPSPSPSSSGQLSQLGASLY-----GPQSALGFSIRG-- 69
Query: 356 QFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLM 415
S NP L + +QG+ + + + GV +++ T S + P++ ++ + +
Sbjct: 70 --MSNNNPQLNRSLTQGTQLPSHSTPTTGVPTMSLHT-TPPSPNRGILPMNTRNMMSSQV 126
Query: 416 SGG 418
G
Sbjct: 127 GQG 129
>UNIPROTKB|Q5ZKI3 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR007282
Pfam:PF04153 GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV GeneTree:ENSGT00390000001285 EMBL:AADN02009856
EMBL:AJ720101 IPI:IPI00592451 RefSeq:NP_001012826.1
UniGene:Gga.50456 UniGene:Gga.9400 STRING:Q5ZKI3
Ensembl:ENSGALT00000016314 GeneID:417851 KEGG:gga:417851
InParanoid:Q5ZKI3 NextBio:20821090 Uniprot:Q5ZKI3
Length = 520
Score = 153 (58.9 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 414 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 473
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 474 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 503
Score = 54 (24.1 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 120 PAVGPAT-PISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEE 178
P VG T P S +Q S + P LPGSS N S+ TSS+
Sbjct: 237 PYVGMVTKPASEQ--SQDFSIHNEDFPALPGSSYKDPTSSNDDNKSNLNTSGKTSSST-- 292
Query: 179 DVGNFPGRRSS 189
D FPG +SS
Sbjct: 293 DGPKFPGDKSS 303
Score = 54 (24.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 342 GHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ 401
G + LG+P+ G S P L + SQG+ + + GV +++ S S
Sbjct: 57 GQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGIL 112
Query: 402 P-NPIHQQSSQQ 412
P NP + + Q
Sbjct: 113 PMNPRNMMNHSQ 124
Score = 41 (19.5 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 64 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 121
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 93 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 152
Query: 122 V 122
+
Sbjct: 153 I 153
>RGD|1311672 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0010606 "positive regulation of
cytoplasmic mRNA processing body assembly" evidence=ISO]
[GO:0030014 "CCR4-NOT complex" evidence=ISO] [GO:0033147 "negative
regulation of intracellular estrogen receptor signaling pathway"
evidence=ISO] [GO:2000036 "regulation of stem cell maintenance"
evidence=ISO] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 RGD:1311672
GO:GO:0005634 GO:GO:0006355 CTD:4848 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:BC087653 IPI:IPI00952054
RefSeq:NP_001011988.1 UniGene:Rn.99836 STRING:Q5PPJ8
Ensembl:ENSRNOT00000066396 GeneID:299805 KEGG:rno:299805
UCSC:RGD:1311672 InParanoid:Q5PPJ8 NextBio:645798
Genevestigator:Q5PPJ8 Uniprot:Q5PPJ8
Length = 429
Score = 142 (55.0 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 648
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 349 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 408
Query: 649 FEQGTYVYFD 658
+E+GTY +FD
Sbjct: 409 YERGTYYFFD 418
Score = 60 (26.2 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 120 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 178
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 172 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 227
Query: 179 DVGNFPGRRSS 189
D FPG +SS
Sbjct: 228 DGPKFPGDKSS 238
Score = 41 (19.5 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 64 TIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNS-DVAARTPPAKSSGVGS-TASTPA 121
T G P + T S + + + + SQ + +RT SSG+GS S+P+
Sbjct: 28 TTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPS 87
Query: 122 V 122
+
Sbjct: 88 I 88
Score = 39 (18.8 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 359 SQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 412
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 5 SNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 59
>SGD|S000001300 [details] [associations]
symbol:NOT3 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IDA;IPI] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IMP] [GO:0016567 "protein ubiquitination"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
SGD:S000001300 GO:GO:0005634 GO:GO:0005737 EMBL:BK006942
GO:GO:0006351 GO:GO:0016567 EMBL:Z46861 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 KO:K12580 GeneTree:ENSGT00390000014743
KO:K10661 RefSeq:NP_012234.3 GeneID:854781 KEGG:sce:YIL030C
OrthoDB:EOG4NW2V3 EMBL:X04289 EMBL:AY692897 PIR:S49940
RefSeq:NP_012226.3 ProteinModelPortal:P06102 DIP:DIP-2256N
IntAct:P06102 MINT:MINT-426406 STRING:P06102 PaxDb:P06102
PeptideAtlas:P06102 EnsemblFungi:YIL038C GeneID:854773
KEGG:sce:YIL038C CYGD:YIL038c HOGENOM:HOG000113831 OMA:MEKYKAV
NextBio:977541 Genevestigator:P06102 GermOnline:YIL038C
Uniprot:P06102
Length = 836
Score = 118 (46.6 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 52/191 (27%), Positives = 87/191 (45%)
Query: 2 KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLED 61
++EL LRLL N+EL P+ V +V+D + +VE NQD +F + + +Y L L E++
Sbjct: 183 QMELALRLLANEELDPQDVKNVQDDINYFVESNQDP--DFVEDETIYDGLNLQSNEAIAH 240
Query: 62 LVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGST-ASTP 120
V A +T S+Q+ + + + + A+ AK + +T A+ P
Sbjct: 241 EVAQYFASQ-NAEDNNTSDANESLQDISKLSKKEQRKLEREAKKA-AKLAAKNATGAAIP 298
Query: 121 AVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDV 180
GP++ S +P S + SP SSS + + T P + ++ S D
Sbjct: 299 VAGPSSTPSPVIPVADASKETERSP----SSSP--IHNATKP-EEAVKTSIKSPRSSAD- 350
Query: 181 GNFPGRRSSPS 191
P + SPS
Sbjct: 351 NLLPSLQKSPS 361
Score = 95 (38.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 600 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 659
+LF+ +Y+ ++ +A K L ++ W+ + WF R E K N+ E G Y F
Sbjct: 707 SLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFFNEICEVGDYKIFKL 766
Query: 660 HIANDDLQHGWCQRIKTEFTFEYNYLE 686
DD W K F +Y++L+
Sbjct: 767 ----DD----WTVIDKINFRLDYSFLQ 785
>UNIPROTKB|Q52JK6 [details] [associations]
symbol:VIP2 "Probable NOT transcription complex subunit
VIP2" species:4100 "Nicotiana benthamiana" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0015074 "DNA integration" evidence=IMP]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 GO:GO:0015074 EMBL:DQ000202 Uniprot:Q52JK6
Length = 603
Score = 154 (59.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 38/122 (31%), Positives = 56/122 (45%)
Query: 539 NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGT 598
N+ E+ + P E A+ P T P + P N A++ + LD
Sbjct: 463 NLNSAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD---- 514
Query: 599 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVY 656
TLF+ FY Q AA EL + W YHR++ WF R + EP V + +E+G+Y+
Sbjct: 515 -TLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYIC 573
Query: 657 FD 658
FD
Sbjct: 574 FD 575
Score = 45 (20.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 39/157 (24%), Positives = 59/157 (37%)
Query: 168 PVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXAT--AVPSNGN- 224
P NL S+ + GN G S V+G G + GN
Sbjct: 34 PNNLPSALSQIPQGNSHGHSGMTSRGGTSVVGNPGYSSNTNGVGGSIPGILPTFAAIGNR 93
Query: 225 -----LGAVPLVSDVAKR------NILGAEE--RLGSSGMVQSLVSPLSNRMILSQAAKG 271
LG P++ + R NI+G R SSG S V L++R+ ++
Sbjct: 94 SSVPGLGVSPILGNAGPRMTNSVGNIVGGGNIGRSISSGAGLS-VPGLASRLNMN----A 148
Query: 272 NDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSF 308
N G+G++ N G M+G + S + GNS+
Sbjct: 149 NSGSGNL--NVQGPNRLMSGVLQQASPQVLSMLGNSY 183
Score = 43 (20.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 372 GSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSG 417
G +I G G+ PG+ S + + ++ Q + LMSG
Sbjct: 122 GGNIGRSISSGAGLSVPGLASRLNMNANSGSGNLNVQGPNR-LMSG 166
>TAIR|locus:505006107 [details] [associations]
symbol:NOT2a "Negative on TATA less2a" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR007282 Pfam:PF04153 EMBL:CP002684 GO:GO:0005634
GO:GO:0006355 EMBL:AC007583 eggNOG:COG5601 KO:K12605
HOGENOM:HOG000005739 IPI:IPI00852321 RefSeq:NP_001077478.1
UniGene:At.42289 PaxDb:A8MR45 PRIDE:A8MR45
EnsemblPlants:AT1G07705.2 GeneID:837284 KEGG:ath:AT1G07705
TAIR:At1g07705 InParanoid:A8MR45 OMA:RMNDADL PhylomeDB:A8MR45
ProtClustDB:CLSN2693279 Genevestigator:A8MR45 Uniprot:A8MR45
Length = 614
Score = 134 (52.2 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 567 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 626
P+ P + Q NP + +TLF+ FY Q AA EL + W
Sbjct: 492 PSKVDPEFSVPQCYYAKNPPPLHQGLFAKLLVETLFYVFYSMPKDEAQLYAANELYNRGW 551
Query: 627 RYHRKYNTWFQRHEEPKVANDEFEQGTYVYFD 658
YH+++ WF R EP V + +E+G+Y FD
Sbjct: 552 FYHKEHRLWFIRIGEPLVKTNAYERGSYHCFD 583
Score = 53 (23.7 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 68/297 (22%), Positives = 101/297 (34%)
Query: 129 SINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS 188
S N+P LS S+ GSS N G + SP + S +GN G
Sbjct: 93 SSNIPV-ALSQMSH------GSSHGHSGLTNRGGLGVSPILGNVGSRMTSSMGNMVGGG- 144
Query: 189 SPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 248
T R + GG A S GN+G ++ V + LG+
Sbjct: 145 ----TMGRTLSSGGGLSIPSLGSRLNLAVNSGS-GNIGQNRMMGGVLPQGSPQVLSMLGN 199
Query: 249 S-----GMVQSLVSPLSN--RMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQ 301
S G+ Q+ V +++ M L ND T D NN + + R S G Q
Sbjct: 200 SYPSAGGLSQNHVQAMNSLSSMGLLNDMNSND-TSPFDINN--DFPQLTSR--PSSAGSQ 254
Query: 302 WRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHS-NLLGMPLGGNKQFSSQ 360
+ G+ + Q G + I +E G+ + P+ + +
Sbjct: 255 GQLGSRLK------QGLGISPIVQQNQEFSIQNEDFPALPGYKGSSADYPMDLHHKEQLH 308
Query: 361 QNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSG 417
+N +L SQ S+ G LG + TS QQQ SS + G
Sbjct: 309 ENSVLMM-QSQQLSMGRSGGFNLG------GAYTSHRPQQQQQHAQAVSSSGVSLHG 358
Score = 51 (23.0 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 508 IGRRSVSDLG-AIGDSLSGATVSSGG 532
+G R S +G +G G T+SSGG
Sbjct: 129 VGSRMTSSMGNMVGGGTMGRTLSSGG 154
Score = 50 (22.7 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 348 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ--PNPI 405
G+ L G+ FSS P ++SQ G+GL NS+T QQ
Sbjct: 353 GVSLHGSDIFSSSHPP----YHSQ---TGGAPGIGLR-SMNSANSITGMGYDQQLIQQYQ 404
Query: 406 HQQSSQQ 412
HQQ+S Q
Sbjct: 405 HQQNSAQ 411
Score = 47 (21.6 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 110 SSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP-GSSSVRGVFDNTGP 162
SSG G S P++G +++N + + VLP GS V + N+ P
Sbjct: 151 SSGGG--LSIPSLGSRLNLAVNSGSGNIGQNRMMGGVLPQGSPQVLSMLGNSYP 202
Score = 44 (20.5 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 369 NSQGS-SISAQAGLGLGVQAPGMNSVTSASLQQQPNPI 405
N G+ ++ AG LG + +N V SA +QQQ I
Sbjct: 50 NIHGNFNVPNLAG-SLGSRNSSLNGVPSAGVQQQNGSI 86
>FB|FBgn0017550 [details] [associations]
symbol:Rga "Regena" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IEA;NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0046331 "lateral inhibition" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR007282 Pfam:PF04153
EMBL:AE014297 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
GO:GO:0006355 GO:GO:0006351 GO:GO:0046331 EMBL:U75467 GO:GO:0030014
eggNOG:COG5601 KO:K12605 GeneTree:ENSGT00390000001285 EMBL:AY094772
EMBL:BT025208 RefSeq:NP_524239.2 RefSeq:NP_730966.1 UniGene:Dm.2486
STRING:Q94547 PaxDb:Q94547 PRIDE:Q94547 EnsemblMetazoa:FBtr0078741
GeneID:40683 KEGG:dme:Dmel_CG2161 UCSC:CG2161-RA CTD:40683
FlyBase:FBgn0017550 InParanoid:Q94547 OMA:KVTNIPA OrthoDB:EOG459ZWX
PhylomeDB:Q94547 ChiTaRS:Rga GenomeRNAi:40683 NextBio:820039
Bgee:Q94547 GermOnline:CG2161 Uniprot:Q94547
Length = 585
Score = 109 (43.4 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 599 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVY 656
D LFF FY Q +AA EL + WRYH + W R + N E+GT+ Y
Sbjct: 491 DLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYY 550
Query: 657 FD 658
FD
Sbjct: 551 FD 552
Score = 77 (32.2 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 42/181 (23%), Positives = 65/181 (35%)
Query: 112 GVGSTASTPAVGPAT--PISINVPAQTLSNASNTSPVLP-GSSSVRGVFDNTGPISSSPP 168
G GS STPA+ T P N Q ++P+ P GS F + G +
Sbjct: 149 GGGSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTSFGMVKQPTS 208
Query: 169 VNLTSSTKEEDVGNFPGRRSSPSLTDV--RVMGRGGXXXXXXXXXXXXXATAVPSNGNLG 226
+ ED PG ++S T+ V G GG T P N ++
Sbjct: 209 EQSEFTMSNEDFPALPGTQNSDGTTNAVGSVAGTGGSGGASTENHLD--GTEKPMN-SIV 265
Query: 227 AVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGET 286
S + N+ G +G +G+ ++ S + + G+ G G + N A
Sbjct: 266 VSGSASGSSGSNV-GV---VGGNGL-GAVGSGIGGLAVGGGGGAGSSGGGGVGGNAASGV 320
Query: 287 V 287
V
Sbjct: 321 V 321
>TAIR|locus:2174259 [details] [associations]
symbol:VIP2 "VIRE2 interacting protein 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0006351 GO:GO:0015074
eggNOG:COG5601 KO:K12605 EMBL:AB006705 EMBL:AK117230 EMBL:AF295433
IPI:IPI00536853 RefSeq:NP_568912.2 UniGene:At.24144 PaxDb:Q9FPW4
PRIDE:Q9FPW4 EnsemblPlants:AT5G59710.1 GeneID:836092
KEGG:ath:AT5G59710 TAIR:At5g59710 HOGENOM:HOG000005739
InParanoid:Q9FPW4 OMA:PEYLINM PhylomeDB:Q9FPW4
Genevestigator:Q9FPW4 Uniprot:Q9FPW4
Length = 614
Score = 132 (51.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 29/92 (31%), Positives = 41/92 (44%)
Query: 567 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 626
PA + + + P R S + + LF+ FY Q AA EL ++ W
Sbjct: 495 PAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGW 554
Query: 627 RYHRKYNTWFQRHEEPKVANDEFEQGTYVYFD 658
YH++ WF R EP V +E+GTY Y D
Sbjct: 555 FYHKELRVWFFRVGEPLVRAATYERGTYEYLD 586
Score = 52 (23.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 46/192 (23%), Positives = 76/192 (39%)
Query: 136 TLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGN--FPGRR----SS 189
T N+S S G G F + S++ PVNL+ + G+ P R +
Sbjct: 64 TSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRGLNVVGN 123
Query: 190 PSLTDVRVMGRGGXX-XXXXXXXXXXXATAVPSNGN---LG-AVPLVSDVAKRNILGAEE 244
P + G GG +VP G LG + P +++ + N++G
Sbjct: 124 PGFSS-NANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITN-SMGNMVGGGN 181
Query: 245 RLGSSGMVQSLVSP-LSNRMILSQAAKGNDGTG-SIDSNNA--GETVAMAGRVFTPSMGM 300
LG + L P LS+R+ L+ N G+G ++ N G + +V + +G
Sbjct: 182 -LGRNISSGGLSIPGLSSRLNLA----ANSGSGLNVQGQNRMMGGVLPQGSQVMS-MLGN 235
Query: 301 QWRTGNSFQNQN 312
+ TG +QN
Sbjct: 236 SYHTGGGPLSQN 247
Score = 43 (20.2 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 37/164 (22%), Positives = 57/164 (34%)
Query: 247 GSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGN 306
G SG+ ++ + N S A I S +AG ++ R P MG+ GN
Sbjct: 109 GHSGIPNRGLNVVGNPGFSSNANGVGGSIPGILSTSAG----LSNRNSVPGMGISQLLGN 164
Query: 307 SFQN-QNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQ-QNPL 364
S N G G + + G S+ L + + Q QN +
Sbjct: 165 SGPRITNSMGNMVGGGNLGRN------ISSGGLSIPGLSSRLNLAANSGSGLNVQGQNRM 218
Query: 365 LQQFNSQGSSISAQAG----LGLGVQAPG-MNSVTSASLQQQPN 403
+ QGS + + G G G + + SV + L PN
Sbjct: 219 MGGVLPQGSQVMSMLGNSYHTGGGPLSQNHVQSVNNMMLSDHPN 262
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 390 MNSVTSASLQQQPN 403
MNS+ SA +QQ PN
Sbjct: 70 MNSIPSAGVQQ-PN 82
>DICTYBASE|DDB_G0284577 [details] [associations]
symbol:DDB_G0284577 "putative CCR4-NOT complex
subunit 2" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
InterPro:IPR007282 Pfam:PF04153 dictyBase:DDB_G0284577
GO:GO:0005634 GO:GO:0006355 GO:GO:0016567 EMBL:AAFI02000066
GO:GO:0030015 eggNOG:COG5601 KO:K12605 RefSeq:XP_638512.1
EnsemblProtists:DDB0237628 GeneID:8624662 KEGG:ddi:DDB_G0284577
OMA:HEEYQRK ProtClustDB:CLSZ2846720 Uniprot:Q54PG2
Length = 579
Score = 122 (48.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 580 PIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH 639
P + +P F +++L +Y +TLF+ FY Q AA EL + WRYH++ W R
Sbjct: 433 PNLESPTF--KMNLFTY--ETLFYIFYSMPKDVLQLHAAIELYDRDWRYHKEGKIWLTRV 488
Query: 640 E--EPKVANDEFEQGTYVYFDFHI 661
+ EP + + FE G++ +FD I
Sbjct: 489 QGTEPNITST-FEVGSFFFFDVTI 511
Score = 60 (26.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 29/119 (24%), Positives = 49/119 (41%)
Query: 306 NSFQNQNEPGQ---FRGRTE-IAPDQREKFXXXXXXXXXXG----HSNLLGMPLGGNKQF 357
N QNQN+ Q FRG+ + + Q + +SN+ GMP GGN
Sbjct: 52 NQQQNQNQQNQQQNFRGQNQNMMGGQNQNNNNNNSSNINNNRVGNNSNINGMPTGGNMAT 111
Query: 358 SSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMS 416
+ ++ N+ ++ + + P ++S++ QQ P P QQ Q +S
Sbjct: 112 NINNMNMMNNNNNTNNNNNGR---------P----ISSSNSQQPPPPPQQQQQPQQPLS 157
>POMBASE|SPCC4G3.15c [details] [associations]
symbol:not2 "CCR4-Not complex subunit Not2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IC] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core
complex" evidence=ISO] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 PomBase:SPCC4G3.15c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0006357 GO:GO:0000289 GO:GO:0030015 GO:GO:0006354
eggNOG:COG5601 HOGENOM:HOG000246523 PIR:T41361 RefSeq:NP_587823.2
STRING:P87240 EnsemblFungi:SPCC4G3.15c.1 GeneID:2538778
OrthoDB:EOG4TB7MJ NextBio:20799960 Uniprot:P87240
Length = 306
Score = 129 (50.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 37/120 (30%), Positives = 55/120 (45%)
Query: 571 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 630
P Y V P PA + + + +TLF+ FY Q AA+EL ++WR+H+
Sbjct: 196 PACYKNVNPP----PAISK---IFQFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248
Query: 631 KYNTWFQRHE--EPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+ W +P +FE+G Y++FD H W +RIK +F Y LED
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALED 298
>WB|WBGene00019273 [details] [associations]
symbol:H43E16.1 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] eggNOG:NOG12793
GeneTree:ENSGT00700000104630 EMBL:FO080627 RefSeq:NP_495358.1
ProteinModelPortal:Q9N5K0 PaxDb:Q9N5K0 EnsemblMetazoa:H43E16.1
GeneID:174101 KEGG:cel:CELE_H43E16.1 UCSC:H43E16.1 CTD:174101
WormBase:H43E16.1 InParanoid:Q9N5K0 OMA:NVVHSAG NextBio:882515
Uniprot:Q9N5K0
Length = 1203
Score = 128 (50.1 bits), Expect = 0.00028, P = 0.00028
Identities = 81/336 (24%), Positives = 118/336 (35%)
Query: 73 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 132
+T+ ST Q S + SQ + PP SS +T ST + T +S+
Sbjct: 622 STIGSTVTQAPSSSTSMGPSPSQSTAGSTMTSAPPVTSSSSANTGSTSS---GTTVSV-- 676
Query: 133 PAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSS---TKEEDVGNFPGRRS 188
QT +S TSPV SS + +G SS VN SS T+ +
Sbjct: 677 --QTTQVSSTTSPVASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQPPASSRSTASQG 734
Query: 189 SPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 248
S S + G +T+VPS+ GA S V + + L S
Sbjct: 735 SSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSS--TGATSSGSTVGSSTMGSTQSSLPS 792
Query: 249 SGMVQ--SLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGN 306
S M S S ++N++ S + G T I S+ A + +G+ + G +
Sbjct: 793 STMTNTGSTGSTVTNQLA-SSSTYGASSTEPIASSTANPGSSTSGQTAVTTQG-----SS 846
Query: 307 SFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQ 366
S Q + G G T P + G G ++Q + Q
Sbjct: 847 STQTNSNTGS-TGSTVTNPPVSSSTSGSSSTQPIASSTANPGSSTSGTTVVTTQGSSSTQ 905
Query: 367 QFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP 402
+ GS+ G V P S TSAS QP
Sbjct: 906 TNPNTGST-------GSTVTQPSAFSSTSASSSTQP 934
>UNIPROTKB|H7C148 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 Pfam:PF04065 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C148 Ensembl:ENST00000440571 Uniprot:H7C148
Length = 375
Score = 120 (47.3 bits), Expect = 0.00042, P = 0.00042
Identities = 52/207 (25%), Positives = 84/207 (40%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE----FSDVD--ELYHLLPLDK 55
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + D+D ++ L
Sbjct: 105 LETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVATS 164
Query: 56 VES---LEDLVTIGPPGLVKATVISTH---QQVTSVQEQGEDTASQDSNSDVAARTPPAK 109
S +ED + +T S+ E ED + ++D PAK
Sbjct: 165 PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAK 224
Query: 110 SSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPV 169
+ ++ PA P + ++A +T+P G + GP +S P
Sbjct: 225 NGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPS 284
Query: 170 NLTSSTKEEDVGNFPGRRSSPSLTDVR 196
+ + + P S PS T R
Sbjct: 285 HNSGTPAPYAQAVAPPAPSGPSTTQPR 311
>WB|WBGene00003825 [details] [associations]
symbol:ntl-2 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0019915 "lipid storage"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] InterPro:IPR007282 Pfam:PF04153
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006355 GO:GO:0040011 GO:GO:0040018 GO:GO:0019915
GO:GO:0040035 HOGENOM:HOG000246523 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:FO080154 GeneID:173773
KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1 CTD:173773 NextBio:881031
PIR:T15310 RefSeq:NP_494772.1 ProteinModelPortal:Q10923
DIP:DIP-25406N IntAct:Q10923 MINT:MINT-1053402 STRING:Q10923
PRIDE:Q10923 EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00056, P = 0.00056
Identities = 33/99 (33%), Positives = 43/99 (43%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVAND--E 648
L L+ D LF+ FY N Q AA EL + WR+H+ W R + V
Sbjct: 263 LRLNKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGN 322
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+G Y FD Q W ++I E EY LED
Sbjct: 323 YEKGHYNVFD--------QMQW-RKIPKELKLEYKELED 352
>UNIPROTKB|Q10923 [details] [associations]
symbol:ntl-2 "Protein NTL-2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0006355
GO:GO:0040011 GO:GO:0040018 GO:GO:0019915 GO:GO:0040035
HOGENOM:HOG000246523 KO:K12605 GeneTree:ENSGT00390000001285
EMBL:FO080154 GeneID:173773 KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1
CTD:173773 NextBio:881031 PIR:T15310 RefSeq:NP_494772.1
ProteinModelPortal:Q10923 DIP:DIP-25406N IntAct:Q10923
MINT:MINT-1053402 STRING:Q10923 PRIDE:Q10923
EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00056, P = 0.00056
Identities = 33/99 (33%), Positives = 43/99 (43%)
Query: 591 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVAND--E 648
L L+ D LF+ FY N Q AA EL + WR+H+ W R + V
Sbjct: 263 LRLNKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGN 322
Query: 649 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+E+G Y FD Q W ++I E EY LED
Sbjct: 323 YEKGHYNVFD--------QMQW-RKIPKELKLEYKELED 352
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.129 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 691 630 0.00091 120 3 11 23 0.48 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 48
No. of states in DFA: 613 (65 KB)
Total size of DFA: 316 KB (2161 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 68.88u 0.11s 68.99t Elapsed: 00:00:03
Total cpu time: 68.90u 0.11s 69.01t Elapsed: 00:00:03
Start: Tue May 21 07:57:24 2013 End: Tue May 21 07:57:27 2013