BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005538
(691 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3
PE=1 SV=1
Length = 751
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDY--------EKWGQRKKEGFTFEYRYLED 747
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3
PE=1 SV=1
Length = 753
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)
Query: 535 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 594
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 595 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 654
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 655 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDY--------EKWGQRKKEGFTFEYRYLED 749
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESLED 61
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ + +
Sbjct: 183 LETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEE---NEFLYDDLDLEDIP--QA 237
Query: 62 LVTIGPP 68
LV PP
Sbjct: 238 LVATSPP 244
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not3 PE=1 SV=2
Length = 640
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 12/173 (6%)
Query: 516 LGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYP 575
L + ++L+ + G D+ + L + +P D+ + + YIP+ P P YP
Sbjct: 475 LKDLVNALNTSKEQHKGAIDKEKLTEALNISCVYVPDATDAAKPQYYIPKDPYPVPHYYP 534
Query: 576 QVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW 635
Q P+ + E + DTLF+ FYY+ TYQQY+A +ELKKQSWR+H+KY TW
Sbjct: 535 QQPLPLFDSSEMTELV-----DPDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTW 589
Query: 636 FQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 688
FQRHEEPK+ DEFE G+Y YFDF + W QR K +F F Y YLED+
Sbjct: 590 FQRHEEPKMITDEFESGSYRYFDF-------EGDWVQRKKADFRFTYQYLEDD 635
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 2 KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV 56
KLELI+R L+N ++SPE VND+++ + YVE +Q E+F++ + LY L LD+
Sbjct: 181 KLELIMRRLENSQISPEAVNDIQEDIMYYVECSQS--EDFAEDENLYDELNLDEA 233
>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment)
OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1
Length = 603
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 25/212 (11%)
Query: 482 AQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQ 541
Q RD L Q + P G LG++ +SD +L G +++ G+ N+
Sbjct: 412 GQPFRDQSLKSMQSQVAPDPFGMLGLLSVIRMSDPDLTSLAL-GIDLTTLGL-----NLN 465
Query: 542 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTL 601
E+ + P E A+ P T P + P N A++ + LD TL
Sbjct: 466 SAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD-----TL 516
Query: 602 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVYFDF 659
F+ FY Q AA EL + W YHR++ WF R + EP V + +E+G+Y+ FD
Sbjct: 517 FYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFD- 575
Query: 660 HIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 691
+ W K F LE ++
Sbjct: 576 -------PNTWETIHKDNFVLHCEMLEKRPVL 600
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2
PE=1 SV=1
Length = 540
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 567 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 618
P + P PQ V + ++N ++L+ L YG D LF+ +Y Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461
Query: 619 KELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 676
EL + WRYH++ W R EP + + +E+GTY +FD W +++
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512
Query: 677 EFTFEYNYLEDE 688
EF EY+ LE+
Sbjct: 513 EFHLEYDKLEER 524
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2
PE=2 SV=2
Length = 540
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 567 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 618
P + P PQ V + ++N ++L+ L YG D LF+ +Y Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461
Query: 619 KELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 676
EL + WRYH++ W R EP + + +E+GTY +FD W +++
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512
Query: 677 EFTFEYNYLEDE 688
EF EY+ LE+
Sbjct: 513 EFHLEYDKLEER 524
>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis
thaliana GN=VIP2 PE=1 SV=2
Length = 614
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 590 RLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEF 649
R S + + LF+ FY Q AA EL ++ W YH++ WF R EP V +
Sbjct: 518 RASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATY 577
Query: 650 EQGTYVYFD 658
E+GTY Y D
Sbjct: 578 ERGTYEYLD 586
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC36 PE=1 SV=1
Length = 191
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 76/170 (44%), Gaps = 44/170 (25%)
Query: 543 LESAFYKLPQPKDS--------------ERARSYI-PRHPAVTPPSY---PQVQAPIVSN 584
L S Y L P+DS E +RS + PR TP S+ P V V+
Sbjct: 34 LSSMLYSLGIPRDSQDHRVLDTFQSPWAETSRSEVEPRF--FTPESFTNIPGVLQSTVTP 91
Query: 585 PAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR 638
P F +R++L + +TLFF FY T Q L EL+K++WRYH+ W +
Sbjct: 92 PCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTK 149
Query: 639 --HEEPKVANDEF-EQGTYVYFDFHIANDDLQHGW--CQRIKTEFTFEYN 683
EP V+ D E+G+YV+FD W CQR +F YN
Sbjct: 150 DPMMEPIVSADGLSERGSYVFFD--------PQRWEKCQR---DFLLFYN 188
>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not2 PE=1 SV=2
Length = 306
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 571 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 630
P Y V P + F + +TLF+ FY Q AA+EL ++WR+H+
Sbjct: 196 PACYKNVNPPPAISKIF-------QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248
Query: 631 KYNTWFQ--RHEEPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLED 687
+ W +P +FE+G Y++FD H W +RIK +F Y LED
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALED 298
>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2
SV=2
Length = 585
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 599 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKV----ANDEFEQGTY 654
D LFF FY Q +AA EL + WRYH + W R P + N E+GT+
Sbjct: 491 DLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITR--IPGIDQYEKNGTKERGTF 548
Query: 655 VYFD 658
YFD
Sbjct: 549 YYFD 552
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT5 PE=1 SV=1
Length = 560
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 596 YGTDTLFFAFYYQQNTYQQYLAAKEL-KKQSWRYHRKYNTWFQRHEE---PKVANDEFEQ 651
+ DTLFF FY+ Q +Y+Q+LAA+EL K ++W +++ W+ + E P + E+
Sbjct: 472 FDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKS--EE 529
Query: 652 GTYVYFDF 659
++ YFD+
Sbjct: 530 ESWRYFDY 537
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESLED 61
LE IL+ L N+E+ PE V + +D ++ YVE N D DF E+ D +Y + + S +
Sbjct: 164 LENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEY---DTIYEDMGCEIQPSSSN 220
Query: 62 LVTIGPPGLVKATVISTHQQVTSVQEQGEDTASQDSNSDVA----ARTP--PAKSSGVGS 115
P T +S+ + S ++Q + DV+ A TP P S S
Sbjct: 221 --NEAPKEGNNQTSLSS---IRSSKKQERSPKKKAPQRDVSISDRATTPIAPGVESASQS 275
Query: 116 TASTPAVGPATPISINVPAQTLSNAS 141
+STP TP+S + P T+ + S
Sbjct: 276 ISSTP-----TPVSTDTPLHTVKDDS 296
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT3 PE=1 SV=2
Length = 836
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 600 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 659
+LF+ +Y+ ++ +A K L ++ W+ + WF R E K N+ E G Y F
Sbjct: 707 SLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFFNEICEVGDYKIFKL 766
Query: 660 HIANDDLQHGWCQRIKTEFTFEYNYLE 686
DD W K F +Y++L+
Sbjct: 767 ----DD----WTVIDKINFRLDYSFLQ 785
Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 2 KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE 40
++EL LRLL N+EL P+ V +V+D + +VE NQD DF E
Sbjct: 183 QMELALRLLANEELDPQDVKNVQDDINYFVESNQDPDFVE 222
>sp|Q32MK0|MYLK3_HUMAN Myosin light chain kinase 3 OS=Homo sapiens GN=MYLK3 PE=2 SV=3
Length = 819
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 18/145 (12%)
Query: 75 VISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPA 134
V+ST + +E GE++ D A R PP ++SG+G+ + V P + PA
Sbjct: 174 VLSTSGVQSDAREPGEESQKADVLEGTAERLPPIRASGLGADPAQAVVSPGQGDGVPGPA 233
Query: 135 QTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS--SPSL 192
Q PG + + P +P NL + ++ PGR + SPSL
Sbjct: 234 Q----------AFPGHLPLPTKVEAKAP--ETPSENLRTGL---ELAPAPGRVNVVSPSL 278
Query: 193 TDVRVMGRGGLSSQPSSSIPLSSAT 217
G+G SS+P PL T
Sbjct: 279 EVAPGAGQGASSSRPDPE-PLEEGT 302
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,161,499
Number of Sequences: 539616
Number of extensions: 12116658
Number of successful extensions: 39894
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 590
Number of HSP's that attempted gapping in prelim test: 37149
Number of HSP's gapped (non-prelim): 2254
length of query: 691
length of database: 191,569,459
effective HSP length: 124
effective length of query: 567
effective length of database: 124,657,075
effective search space: 70680561525
effective search space used: 70680561525
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)