Query 005538
Match_columns 691
No_of_seqs 208 out of 415
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 01:03:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2150 CCR4-NOT transcription 100.0 2.7E-52 5.8E-57 452.3 25.4 271 378-688 290-574 (575)
2 COG5665 NOT5 CCR4-NOT transcri 100.0 2E-41 4.3E-46 354.6 16.8 119 558-688 428-546 (548)
3 PF04153 NOT2_3_5: NOT2 / NOT3 100.0 2E-38 4.4E-43 292.7 10.8 128 546-686 1-134 (134)
4 COG5601 CDC36 General negative 100.0 1.8E-33 4E-38 264.9 1.7 159 505-686 6-172 (172)
5 KOG2151 Predicted transcriptio 99.5 2.3E-15 4.9E-20 156.7 3.9 126 481-626 182-312 (312)
6 KOG2151 Predicted transcriptio 99.2 1.9E-11 4.1E-16 127.8 4.3 133 518-687 37-175 (312)
7 KOG1899 LAR transmembrane tyro 51.6 1.7E+02 0.0037 35.4 12.0 39 3-41 258-299 (861)
8 TIGR03687 pupylate_cterm ubiqu 50.1 8.8 0.00019 29.5 1.1 23 18-40 3-25 (33)
9 PF12363 DUF3647: Phage protei 40.3 11 0.00025 34.8 0.6 30 24-57 70-99 (113)
10 TIGR00244 transcriptional regu 40.0 50 0.0011 32.8 4.8 35 5-39 69-104 (147)
11 PF05523 FdtA: WxcM-like, C-te 37.8 23 0.00051 33.4 2.2 33 596-639 29-61 (131)
12 PHA02046 hypothetical protein 28.9 57 0.0012 30.5 3.1 47 3-49 40-98 (99)
13 PF08006 DUF1700: Protein of u 28.4 82 0.0018 30.7 4.3 47 3-51 7-60 (181)
14 COG3945 Uncharacterized conser 28.0 66 0.0014 33.2 3.6 32 3-34 27-58 (189)
15 PF03357 Snf7: Snf7; InterPro 27.0 28 0.0006 32.6 0.8 30 6-36 93-122 (171)
16 PRK00977 exodeoxyribonuclease 25.5 85 0.0018 27.9 3.5 29 1-29 17-46 (80)
17 PF02609 Exonuc_VII_S: Exonucl 25.3 1E+02 0.0023 25.0 3.7 27 1-27 6-33 (53)
18 TIGR03181 PDH_E1_alph_x pyruva 24.8 72 0.0016 34.6 3.5 44 8-51 281-326 (341)
19 TIGR01280 xseB exodeoxyribonuc 24.2 97 0.0021 26.7 3.5 30 1-30 8-38 (67)
20 PF05639 Pup: Pup-like protein 21.3 27 0.00058 30.9 -0.4 25 16-40 37-61 (69)
21 PRK14066 exodeoxyribonuclease 21.2 1.2E+02 0.0025 26.9 3.5 29 1-29 11-40 (75)
22 PRK07639 acyl carrier protein; 20.5 67 0.0015 28.4 1.9 42 20-64 7-49 (86)
23 COG1722 XseB Exonuclease VII s 20.3 1.2E+02 0.0025 27.4 3.3 30 2-31 18-48 (81)
24 PRK14070 exodeoxyribonuclease 20.1 1.4E+02 0.0031 26.2 3.7 25 1-25 2-27 (69)
No 1
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=2.7e-52 Score=452.28 Aligned_cols=271 Identities=38% Similarity=0.595 Sum_probs=192.6
Q ss_pred cccccceeccCCCccccccccccCCCCcCcCcccceecccCC--------------CCcccCcccccCCCCCCCCCCCCC
Q 005538 378 QAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQ--------------KDADVSHLKVEEPQQPQNLPEEST 443 (691)
Q Consensus 378 q~~~~~~~q~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~d~~ 443 (691)
|++.++|+++++++..++|++...-|++|+.-.|...++... +.+-+++.-.-..|-..+.|+++.
T Consensus 290 ~~~~~~~~~~~s~~A~aaA~~~~~~~s~~~~~qq~~~~~s~~~P~~~~p~~~~~~~~~st~~~p~~p~~q~~~~~P~~s~ 369 (575)
T KOG2150|consen 290 HNGPPIGIDASSSAAPSGAVLAKGSNGQHQSPQQLRIPLSMPPPHSPTPSLKRIQHKVSTLDGPRTPPEQSEENTPLSSA 369 (575)
T ss_pred cCCCccccCCCccccchhhhcccccccCCCccccccccCCCCCCCCCCccccchhhccccccCCCCCcccccccChhhhc
Confidence 888889999999999999999998888888777776542100 111111111000111122333222
Q ss_pred CcccCCCCCCCCccccccCCCcccccCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccccccCCCCccccccCC
Q 005538 444 PESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSL 523 (691)
Q Consensus 444 ~e~~~~~~~~~~~~~~d~~~~~~~~d~p~~~~~s~~e~~Q~~Rd~~l~~~Q~~qs~~~~GLLGvI~RmsdpDL~AiG~DL 523 (691)
.-.+.. . --.|.|++-...+..++.-..+..+..+.+++..+--.+...+|...-||+.
T Consensus 370 k~~~~~-----s------------~~~~~~vp~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~---- 428 (575)
T KOG2150|consen 370 KLQASK-----S------------ESPPKGVPELEEEAAASTLSPDSSEPASANTPLSSKEQHSPFELGLSPLGVQ---- 428 (575)
T ss_pred hhccCc-----c------------cCCCCCCCccccccccCCCCCCccccccccCCCCccccccchhhcccccccc----
Confidence 211110 0 0022333333333322222222222222222222222222222222222222
Q ss_pred CccccccccccccccchhhHHHHhhcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEE
Q 005538 524 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFF 603 (691)
Q Consensus 524 T~~~~tLG~m~dq~LNLnslE~ly~tFpsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~L~np~lfqKiKi~kFseETLFY 603 (691)
.++++++...+.++|.+|..++.|.|+|.++.|.|++|+.+|.+|++++++.+++..+|+| |+.|||||
T Consensus 429 ------~~~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dTLFf 497 (575)
T KOG2150|consen 429 ------SEITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDTLFF 497 (575)
T ss_pred ------ccccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccceee
Confidence 2356999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EeecCCCcHHHHHHHHHHhhcCceeecccceeeecccCCccCCCcceeeeEEEeccccCccccccCcceeecCCeEEech
Q 005538 604 AFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYN 683 (691)
Q Consensus 604 IFY~~PgD~~QllAA~EL~~RgWRYHkk~k~Wf~R~~ePkv~Td~yErGsYiyFD~e~~~d~~~~~W~qr~K~nFtfeY~ 683 (691)
||||++|+++|++||+||++|+||||++|.+||+|+.||+.+|+.||+|+|+|||+. .||+|.|.+|+|+|.
T Consensus 498 iFY~~qgt~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~~--------~W~qrkK~dFtfeY~ 569 (575)
T KOG2150|consen 498 IFYYQQGTYEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDYK--------DWSQRKKIDFTFEYQ 569 (575)
T ss_pred EEeeecchHHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEehh--------Hhhhhhccceeeehh
Confidence 999999999999999999999999999999999999999999999999999999994 899999999999999
Q ss_pred hhhhh
Q 005538 684 YLEDE 688 (691)
Q Consensus 684 ~LE~r 688 (691)
|||+.
T Consensus 570 yLE~~ 574 (575)
T KOG2150|consen 570 YLEDS 574 (575)
T ss_pred hccCC
Confidence 99985
No 2
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=2e-41 Score=354.59 Aligned_cols=119 Identities=45% Similarity=0.889 Sum_probs=114.7
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeee
Q 005538 558 RARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQ 637 (691)
Q Consensus 558 ppR~Y~PrnP~~tP~cYpq~ppP~L~np~lfqKiKi~kFseETLFYIFY~~PgD~~QllAA~EL~~RgWRYHkk~k~Wf~ 637 (691)
-.+.|+|+.|+.+|.+||+.|++.|.+..+|.+ |+.||||||||+.+|+++||+||+||++|+||||++|.+||+
T Consensus 428 ~~KkY~P~~P~~~Ps~~P~~PL~~F~S~~if~k-----~D~DTLFfiFY~~~GTyQQY~Aa~eLKk~SWRFHkKY~TWFQ 502 (548)
T COG5665 428 TDKKYKPGKPSKAPSKKPDDPLSRFSSARIFMK-----FDLDTLFFIFYHYQGTYQQYLAARELKKRSWRFHKKYRTWFQ 502 (548)
T ss_pred hhhccCCCCCCCCCCCCCCCccccccHHHHHHh-----cCccceEEEeeeccchHHHHHHHHHHHhhhhhhhcchhhhhh
Confidence 345899999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cccCCccCCCcceeeeEEEeccccCccccccCcceeecCCeEEechhhhhh
Q 005538 638 RHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 688 (691)
Q Consensus 638 R~~ePkv~Td~yErGsYiyFD~e~~~d~~~~~W~qr~K~nFtfeY~~LE~r 688 (691)
|+.+|+.+|.+||+|+|.||||+ ..|.+|.|.+|+|.|.|||+.
T Consensus 503 R~~EPK~IT~~~E~Gs~ryFDy~-------~~W~~rKK~DF~F~Y~YLE~~ 546 (548)
T COG5665 503 REIEPKPITGKSEEGSWRYFDYK-------KSWLARKKNDFVFNYEYLEKL 546 (548)
T ss_pred hhcccccccCccccCceeEeecc-------chHHHhhcccceeehhhhhhc
Confidence 99999999999999999999997 689999999999999999974
No 3
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=2e-38 Score=292.73 Aligned_cols=128 Identities=45% Similarity=0.910 Sum_probs=114.2
Q ss_pred HhhcCCCCCCCCcc----CCCC-CCCCCCCCCCCCCCCCCC-CCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHH
Q 005538 546 AFYKLPQPKDSERA----RSYI-PRHPAVTPPSYPQVQAPI-VSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAK 619 (691)
Q Consensus 546 ly~tFpsPwDsEpp----R~Y~-PrnP~~tP~cYpq~ppP~-L~np~lfqKiKi~kFseETLFYIFY~~PgD~~QllAA~ 619 (691)
|+.+|.+||++.++ ..|. |+.+..+|.||++.+++. ++++.+++| |++||||||||+||||++|++||+
T Consensus 1 L~~sf~sp~~~~~~~~~~~~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k-----~~~eTLFyiFY~~p~~~~Q~~AA~ 75 (134)
T PF04153_consen 1 LYSSFASPPSDSDSRQQEPQYQIPSCYLPTPSSYPQRPPPIILDSPEKFQK-----FSEETLFYIFYYMPGDYQQLLAAK 75 (134)
T ss_pred CccccCCCCCCCCCCCCCCCCCCCCCcCcCccccCCCcCcccccchHHHhh-----cCCceEEEEEeecCCcHHHHHHHH
Confidence 56789999988654 3454 766666788888888776 667777777 999999999999999999999999
Q ss_pred HHhhcCceeecccceeeecccCCccCCCcceeeeEEEeccccCccccccCcceeecCCeEEechhhh
Q 005538 620 ELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 686 (691)
Q Consensus 620 EL~~RgWRYHkk~k~Wf~R~~ePkv~Td~yErGsYiyFD~e~~~d~~~~~W~qr~K~nFtfeY~~LE 686 (691)
||++|||||||++++||+|+++++++++.+|+|+|+|||++ +|++++|.||+|+|++||
T Consensus 76 eL~~R~Wryhk~~~~W~~r~~~~~~~~~~~e~g~y~~FD~~--------~W~~~~k~~f~~~y~~LE 134 (134)
T PF04153_consen 76 ELYKRGWRYHKEYKTWFQRDSEPKPITEQYERGSYVYFDPE--------SWEKRRKKNFTFDYSDLE 134 (134)
T ss_pred HHHHCCcEEecCcCEEeeECCCCCccccceeeeeEEEechH--------HhcCcchhccEEeHHHcC
Confidence 99999999999999999999999999999999999999995 799989999999999998
No 4
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]
Probab=99.97 E-value=1.8e-33 Score=264.91 Aligned_cols=159 Identities=24% Similarity=0.479 Sum_probs=132.1
Q ss_pred cccccccCCCCcc--ccccCCCccccccccccccccch----hhHHHHhhcCCCCCCCCccCCCCCCCCCCCCCCCCCCC
Q 005538 505 LGVIGRRSVSDLG--AIGDSLSGATVSSGGMHDQMYNM----QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQ 578 (691)
Q Consensus 505 LGvI~RmsdpDL~--AiG~DLT~~~~tLG~m~dq~LNL----nslE~ly~tFpsPwDsEppR~Y~PrnP~~tP~cYpq~p 578 (691)
+-++ +|.|.+++ .||-||. +++ +.| ...+....+|.+||+...-++..| -+.+|.||+..|
T Consensus 6 ~pl~-~ied~e~s~~~lg~Dl~----s~~------~sl~~p~~~qDr~~~t~~sPwae~tkk~vqp--~f~lP~cy~n~p 72 (172)
T COG5601 6 KPLE-QIEDEEQSIHDLGKDLL----SEI------LSLVRPKKYQDRPSTTLYSPWAESTKKPVQP--MFMLPNCYPNAP 72 (172)
T ss_pred hhHH-HHHHhhhhHHHhchhHH----HHH------HhhcCcccccccccccccChhhhhccCcccc--hhcCccccCCCC
Confidence 3355 88888887 8999999 666 544 344557778999999885444333 277999999998
Q ss_pred CCCCCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeeeccc--CCccCCCcceeeeEEE
Q 005538 579 APIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVY 656 (691)
Q Consensus 579 pP~L~np~lfqKiKi~kFseETLFYIFY~~PgD~~QllAA~EL~~RgWRYHkk~k~Wf~R~~--ePkv~Td~yErGsYiy 656 (691)
.|+.-+.. .+.+||.+|++||||||||.+|+|++|..|+.||-+|+|||||.+|+|++.+. +|.+.++..|||+|++
T Consensus 73 ~pp~f~~~-~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~~~~~~ergsyvf 151 (172)
T COG5601 73 NPPIFKVN-IEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPATADHVKERGSYVF 151 (172)
T ss_pred CCCceecc-hHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccccccccccceEEE
Confidence 65432344 45689999999999999999999999999999999999999999999999984 7888888999999999
Q ss_pred eccccCccccccCcceeecCCeEEechhhh
Q 005538 657 FDFHIANDDLQHGWCQRIKTEFTFEYNYLE 686 (691)
Q Consensus 657 FD~e~~~d~~~~~W~qr~K~nFtfeY~~LE 686 (691)
|||. .|+ |++.+|.|+|+.++
T Consensus 152 FDP~--------~W~-k~~~dfll~y~av~ 172 (172)
T COG5601 152 FDPF--------SWS-KVSLDFLLDYKAVR 172 (172)
T ss_pred Ecch--------hHH-HHhHHHHHHHHhhC
Confidence 9995 897 99999999999874
No 5
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.54 E-value=2.3e-15 Score=156.66 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=96.3
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCccccc--ccCCCCc--c-ccccCCCccccccccccccccchhhHHHHhhcCCCCCC
Q 005538 481 PAQVVRDTDLSPGQPLQSSQPSGGLGVIG--RRSVSDL--G-AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKD 555 (691)
Q Consensus 481 ~~Q~~Rd~~l~~~Q~~qs~~~~GLLGvI~--RmsdpDL--~-AiG~DLT~~~~tLG~m~dq~LNLnslE~ly~tFpsPwD 555 (691)
.+|...|..+-.....+....+|+.|++. |+.+.|- . .+|.||+ ++| |+|+..+.++.+|-+||.
T Consensus 182 g~q~~Pdg~v~niP~~m~t~~fgm~gLL~~ir~~~~~g~~~l~lg~Dl~----~ll------lsla~~~di~~~F~~P~~ 251 (312)
T KOG2151|consen 182 GSQPTPDGYVPNIPSGMETGQFGMKGLLTLIRGAQGEGQTTLPLGADLN----SLL------LSLAVPEDIIPTFQGPWG 251 (312)
T ss_pred ccccCCCCcccCCCcchhhhhhhhhcchhhheecccCcceeeccCCChh----hhh------ccccccccccccccCCcc
Confidence 34444555554334444444565555544 7777652 2 8999999 999 999999999999999999
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcCc
Q 005538 556 SERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 626 (691)
Q Consensus 556 sEppR~Y~PrnP~~tP~cYpq~ppP~L~np~lfqKiKi~kFseETLFYIFY~~PgD~~QllAA~EL~~RgW 626 (691)
.+|++.. -.+.+|.||+..+++.. . .|+..|++||||||||.+++|.+|..||.||.+|+|
T Consensus 252 ~~P~~~~---~~~~lp~~y~~v~~~~~-~------~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w 312 (312)
T KOG2151|consen 252 EVPTSQE---ASFNLPNCYLNVNPKLQ-F------SKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW 312 (312)
T ss_pred cCCcccc---hhhhcchhhhccCCccc-h------HHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence 9999832 24789999998544331 1 236669999999999999999999999999999999
No 6
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.16 E-value=1.9e-11 Score=127.79 Aligned_cols=133 Identities=28% Similarity=0.555 Sum_probs=107.1
Q ss_pred ccccCCCccccccccccccccchhh-HHHHhhcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhHHhh---hcc
Q 005538 518 AIGDSLSGATVSSGGMHDQMYNMQM-LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER---LSL 593 (691)
Q Consensus 518 AiG~DLT~~~~tLG~m~dq~LNLns-lE~ly~tFpsPwDsEppR~Y~PrnP~~tP~cYpq~ppP~L~np~lfqK---iKi 593 (691)
++|.||+ +|| ++++. .-.+|.+|..||++++.+.- ....+|.||...+. ++.+ ..+
T Consensus 37 ~~~~d~~----~lg------~~~n~~~~~~~~~f~g~~~s~~l~~l---~~~~~P~~~~~~~~-------~~~~~~~~~~ 96 (312)
T KOG2151|consen 37 ALGYDLT----TLG------LNLNLSERKLLMNFAGPWASEPLRHL---LDTKVPEEYMTHRH-------LRSKLPSLRL 96 (312)
T ss_pred eeccchh----ccC------cccccccccccccccCcCCCcccccc---ccccCccccccchh-------hhhcCCcccc
Confidence 8999999 999 55542 23688889999999998843 34578999984322 2222 225
Q ss_pred CCCCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeeecc--cCCccCCCcceeeeEEEeccccCccccccCcc
Q 005538 594 DSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH--EEPKVANDEFEQGTYVYFDFHIANDDLQHGWC 671 (691)
Q Consensus 594 ~kFseETLFYIFY~~PgD~~QllAA~EL~~RgWRYHkk~k~Wf~R~--~ePkv~Td~yErGsYiyFD~e~~~d~~~~~W~ 671 (691)
+++...-|||+||++| |.||..|.||||++.+.|+.+. +.+...++.++.|.|..||.. .|+
T Consensus 97 ~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~~~~~q~--------s~~ 160 (312)
T KOG2151|consen 97 NKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHFNVFDQM--------SWR 160 (312)
T ss_pred cccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchhccccch--------hhh
Confidence 6799999999999999 9999999999999999999997 356667789999999999984 786
Q ss_pred eeecCCeEEechhhhh
Q 005538 672 QRIKTEFTFEYNYLED 687 (691)
Q Consensus 672 qr~K~nFtfeY~~LE~ 687 (691)
++-++-.++|..+|.
T Consensus 161 -~~~ke~~l~~~~~~~ 175 (312)
T KOG2151|consen 161 -KIPKELKLAYSDLED 175 (312)
T ss_pred -hcccchhhccccccc
Confidence 667788888888876
No 7
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=51.62 E-value=1.7e+02 Score=35.42 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=31.9
Q ss_pred HHHHHHhhhCCCCC-hhhHHhHHHHHHHHHHhccc--ccccc
Q 005538 3 LELILRLLDNDELS-PEQVNDVKDLLEDYVERNQD--DFEEF 41 (691)
Q Consensus 3 LE~ilRlLdNd~l~-peqV~~ikddld~YvE~Nqd--DF~e~ 41 (691)
++++.+-|.-+... .++++.+|..+|.-+..|.+ +|+|+
T Consensus 258 ~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~ 299 (861)
T KOG1899|consen 258 LRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIES 299 (861)
T ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHH
Confidence 46666666666665 78899999999999999977 89886
No 8
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=50.08 E-value=8.8 Score=29.55 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.9
Q ss_pred hhHHhHHHHHHHHHHhccccccc
Q 005538 18 EQVNDVKDLLEDYVERNQDDFEE 40 (691)
Q Consensus 18 eqV~~ikddld~YvE~NqdDF~e 40 (691)
+.+++|-|+||.-||.|-++|+.
T Consensus 3 ~~~D~lLDeId~vLe~NAe~FV~ 25 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNAEEFVR 25 (33)
T ss_pred chHHHHHHHHHHHHHHhHHHHHH
Confidence 57899999999999999999985
No 9
>PF12363 DUF3647: Phage protein ; InterPro: IPR024410 Proteins in this entry are frequently annotated as phage proteins, however there is little accompanying literature to back this up or to describe the nature of these phage proteins.
Probab=40.34 E-value=11 Score=34.83 Aligned_cols=30 Identities=30% Similarity=0.659 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcccccccccchhhhhhcCCCcccc
Q 005538 24 KDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVE 57 (691)
Q Consensus 24 kddld~YvE~NqdDF~e~~d~eelYd~L~lde~e 57 (691)
.++|+.||+. -|++++|.++||+++ ++++.
T Consensus 70 ~~eIe~~ie~---~~e~~~~~~~l~~~v-l~el~ 99 (113)
T PF12363_consen 70 REEIEDYIED---IIEDEDDIEELFDEV-LKELK 99 (113)
T ss_pred HHHHHHHHHH---HHhcchhHHHHHHHH-HHHHH
Confidence 4778888876 333444579999999 87775
No 10
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=39.97 E-value=50 Score=32.83 Aligned_cols=35 Identities=9% Similarity=0.197 Sum_probs=30.6
Q ss_pred HHHHhhhCCCCChhhHHhHHHHHHHHHHhccc-ccc
Q 005538 5 LILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFE 39 (691)
Q Consensus 5 ~ilRlLdNd~l~peqV~~ikddld~YvE~Nqd-DF~ 39 (691)
-|.|-+...-|++++|+.|-++|+..|...++ +..
T Consensus 69 gl~~Ac~KRpVs~e~ie~~v~~Ie~~l~~~~~~EI~ 104 (147)
T TIGR00244 69 GMVRACEKRPVSFDDLEHAINHIEAQLRAQGEREVP 104 (147)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 37788889999999999999999999999887 543
No 11
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=37.76 E-value=23 Score=33.39 Aligned_cols=33 Identities=15% Similarity=0.556 Sum_probs=19.1
Q ss_pred CCCceeEEEeecCCCcHHHHHHHHHHhhcCceeecccceeeecc
Q 005538 596 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH 639 (691)
Q Consensus 596 FseETLFYIFY~~PgD~~QllAA~EL~~RgWRYHkk~k~Wf~R~ 639 (691)
|...-.||||-.-++ + .|||.+|++...||.-.
T Consensus 29 f~i~rvy~i~~~~~~-~----------~RG~H~Hk~~~~~~~~l 61 (131)
T PF05523_consen 29 FEIKRVYYIYNVPPG-V----------IRGWHAHKKTTQWFIVL 61 (131)
T ss_dssp S---EEEEEES--SS-------------EEEEEESS--EEEEEE
T ss_pred CCccEEEEEEcCCCC-C----------cccccccccccEEEEEE
Confidence 555667776655554 3 59999999999999775
No 12
>PHA02046 hypothetical protein
Probab=28.92 E-value=57 Score=30.55 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=36.1
Q ss_pred HHHHHHhhhCCCCCh-----hhHHhHHHHHHHHHHhccc----ccc---cccchhhhhh
Q 005538 3 LELILRLLDNDELSP-----EQVNDVKDLLEDYVERNQD----DFE---EFSDVDELYH 49 (691)
Q Consensus 3 LE~ilRlLdNd~l~p-----eqV~~ikddld~YvE~Nqd----DF~---e~~d~eelYd 49 (691)
+--++++||.++++- ++++++++.++.-...|+. -|. -++|+++||.
T Consensus 40 ~aa~~KFLKDNnItcdpaD~~~m~~Lr~e~~~~~a~rr~~~~~~~~~~l~~~D~~~lyg 98 (99)
T PHA02046 40 KAAIAKFLKDNEITCDPADTINIDRLREEFRQAQAENRRIALEGFIAGLTDDDMERLYG 98 (99)
T ss_pred HHHHHHHhhcCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHhc
Confidence 345789999988763 5889999999999888887 452 3677888884
No 13
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=28.39 E-value=82 Score=30.74 Aligned_cols=47 Identities=17% Similarity=0.374 Sum_probs=32.7
Q ss_pred HHHHHHhhhCCCCChhhHHhHHHHHHHHHHhcccc-ccc------ccchhhhhhcC
Q 005538 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQDD-FEE------FSDVDELYHLL 51 (691)
Q Consensus 3 LE~ilRlLdNd~l~peqV~~ikddld~YvE~NqdD-F~e------~~d~eelYd~L 51 (691)
|+++-+.|+ .+.+++++++-+|.+.|+++.+++ =.| --|++++..++
T Consensus 7 L~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i 60 (181)
T PF08006_consen 7 LNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREI 60 (181)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHH
Confidence 456666676 489999999999999999976652 222 33555665555
No 14
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=28.04 E-value=66 Score=33.19 Aligned_cols=32 Identities=19% Similarity=0.480 Sum_probs=28.0
Q ss_pred HHHHHHhhhCCCCChhhHHhHHHHHHHHHHhc
Q 005538 3 LELILRLLDNDELSPEQVNDVKDLLEDYVERN 34 (691)
Q Consensus 3 LE~ilRlLdNd~l~peqV~~ikddld~YvE~N 34 (691)
|+.++.+..|+.|+|+.|..|.|+|.-|++..
T Consensus 27 Lr~~~~~~~~g~i~y~~v~~iidFi~nfaDkc 58 (189)
T COG3945 27 LRKALDLIKNGPIDYSDVKEIIDFIRNFADKC 58 (189)
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhc
Confidence 56677788899999999999999999998764
No 15
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=27.03 E-value=28 Score=32.62 Aligned_cols=30 Identities=17% Similarity=0.412 Sum_probs=24.3
Q ss_pred HHHhhhCCCCChhhHHhHHHHHHHHHHhccc
Q 005538 6 ILRLLDNDELSPEQVNDVKDLLEDYVERNQD 36 (691)
Q Consensus 6 ilRlLdNd~l~peqV~~ikddld~YvE~Nqd 36 (691)
+|+.+ |..++++.|.++.|+|+.-++...+
T Consensus 93 ~Lk~~-~~~i~~~~v~~~~d~~~e~~e~~~e 122 (171)
T PF03357_consen 93 ALKKI-NKQINLDKVEKLMDDFQEEMEDQDE 122 (171)
T ss_dssp HHHHH-HHSTTSCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHH-HHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 45555 5668999999999999999988765
No 16
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.48 E-value=85 Score=27.91 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=21.6
Q ss_pred ChHHHHHHhhhCCCCC-hhhHHhHHHHHHH
Q 005538 1 MKLELILRLLDNDELS-PEQVNDVKDLLED 29 (691)
Q Consensus 1 ~kLE~ilRlLdNd~l~-peqV~~ikddld~ 29 (691)
++||.|++.|+++.|+ -+.+...++.++.
T Consensus 17 ~~LEeIv~~LE~~~l~Lees~~lyeeg~~L 46 (80)
T PRK00977 17 AELEEIVTRLESGDLPLEESLAAFERGVAL 46 (80)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 4799999999999999 4555555555443
No 17
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=25.27 E-value=1e+02 Score=24.96 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=17.7
Q ss_pred ChHHHHHHhhhCCCCChh-hHHhHHHHH
Q 005538 1 MKLELILRLLDNDELSPE-QVNDVKDLL 27 (691)
Q Consensus 1 ~kLE~ilRlLdNd~l~pe-qV~~ikddl 27 (691)
++||.|++.|+|++++-| .+...++.+
T Consensus 6 ~~Le~Iv~~Le~~~~sLdes~~lyeeg~ 33 (53)
T PF02609_consen 6 ERLEEIVEKLESGELSLDESLKLYEEGM 33 (53)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 379999999999999944 444444443
No 18
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=24.77 E-value=72 Score=34.57 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=37.4
Q ss_pred HhhhCCCCChhhHHhHHHHHHHHHHhccc--ccccccchhhhhhcC
Q 005538 8 RLLDNDELSPEQVNDVKDLLEDYVERNQD--DFEEFSDVDELYHLL 51 (691)
Q Consensus 8 RlLdNd~l~peqV~~ikddld~YvE~Nqd--DF~e~~d~eelYd~L 51 (691)
+|++++-++.++++.|++++...|+.--+ .-..+-|++++|++.
T Consensus 281 ~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~~~~~v 326 (341)
T TIGR03181 281 YLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHV 326 (341)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhc
Confidence 46788889999999999999999988776 555677889999887
No 19
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=24.21 E-value=97 Score=26.71 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=23.1
Q ss_pred ChHHHHHHhhhCCCCC-hhhHHhHHHHHHHH
Q 005538 1 MKLELILRLLDNDELS-PEQVNDVKDLLEDY 30 (691)
Q Consensus 1 ~kLE~ilRlLdNd~l~-peqV~~ikddld~Y 30 (691)
++||.|++.|++++|+ .+.+...++.+..+
T Consensus 8 ~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~ 38 (67)
T TIGR01280 8 SELEQIVQKLESGDLALEEALNLFERGMALA 38 (67)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 4899999999999999 55566666665544
No 20
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=21.30 E-value=27 Score=30.86 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=17.0
Q ss_pred ChhhHHhHHHHHHHHHHhccccccc
Q 005538 16 SPEQVNDVKDLLEDYVERNQDDFEE 40 (691)
Q Consensus 16 ~peqV~~ikddld~YvE~NqdDF~e 40 (691)
..+.|++|-|+||.-||.|-++|+.
T Consensus 37 ~~~~vD~lLDeID~vLE~NAeeFVr 61 (69)
T PF05639_consen 37 LTDDVDDLLDEIDSVLETNAEEFVR 61 (69)
T ss_dssp CHCCHHHHHHHHTTTSSSC------
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999985
No 21
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.16 E-value=1.2e+02 Score=26.92 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=21.6
Q ss_pred ChHHHHHHhhhCCCCC-hhhHHhHHHHHHH
Q 005538 1 MKLELILRLLDNDELS-PEQVNDVKDLLED 29 (691)
Q Consensus 1 ~kLE~ilRlLdNd~l~-peqV~~ikddld~ 29 (691)
++||.|++.|+++.|+ .+.+...++.+.-
T Consensus 11 ~~LE~IV~~LE~g~l~Leesl~lyeeG~~L 40 (75)
T PRK14066 11 KKLEEVVKKLEGGELSLDDSLKAFEEGVKH 40 (75)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 4799999999999999 5555555555443
No 22
>PRK07639 acyl carrier protein; Provisional
Probab=20.45 E-value=67 Score=28.38 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHhHHHHHHHHHHhcc-cccccccchhhhhhcCCCccccccchhhc
Q 005538 20 VNDVKDLLEDYVERNQ-DDFEEFSDVDELYHLLPLDKVESLEDLVT 64 (691)
Q Consensus 20 V~~ikddld~YvE~Nq-dDF~e~~d~eelYd~L~lde~e~~~~~v~ 64 (691)
.+.||+-|..+++-.. ++|.++ ..|+++|+||.+..++-++.
T Consensus 7 ~~~i~~il~e~l~~~~~~~i~~d---~~l~edL~lDSld~velv~~ 49 (86)
T PRK07639 7 KNAVLKIMEEKLELKNVTHLEET---MRLNEDLYIDSVMMLQLIVY 49 (86)
T ss_pred HHHHHHHHHHHhCCCccccCCCC---CCcccccCCChHHHHHHHHH
Confidence 5788888888886554 478877 88999999999987765443
No 23
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=20.31 E-value=1.2e+02 Score=27.37 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=23.7
Q ss_pred hHHHHHHhhhCCCCC-hhhHHhHHHHHHHHH
Q 005538 2 KLELILRLLDNDELS-PEQVNDVKDLLEDYV 31 (691)
Q Consensus 2 kLE~ilRlLdNd~l~-peqV~~ikddld~Yv 31 (691)
.||.|++.|+|++|. -+-|...++.++.|=
T Consensus 18 eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k 48 (81)
T COG1722 18 ELEEIVESLESGELPLEEALKEFERGMALYK 48 (81)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHH
Confidence 699999999999999 566666666666653
No 24
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.06 E-value=1.4e+02 Score=26.17 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=18.9
Q ss_pred ChHHHHHHhhhCCCCC-hhhHHhHHH
Q 005538 1 MKLELILRLLDNDELS-PEQVNDVKD 25 (691)
Q Consensus 1 ~kLE~ilRlLdNd~l~-peqV~~ikd 25 (691)
++||.|++.|++++++ .+.+...++
T Consensus 2 ~~LEeIV~~LE~gel~Leesl~lyee 27 (69)
T PRK14070 2 KELEEIVNRLENEDLPLEESIKLFER 27 (69)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4899999999999999 444444333
Done!