Query 005538
Match_columns 691
No_of_seqs 210 out of 415
Neff 3.3
Searched_HMMs 13730
Date Tue Mar 26 18:15:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005538.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2046-2050//hhsearch_scop/005538hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ozla1 c.36.1.11 (A:1-361) E1 32.4 11 0.0008 14.0 3.5 14 319-332 23-36 (361)
2 d1nlna_ d.3.1.7 (A:) Human ade 14.9 15 0.0011 13.2 -0.2 28 653-688 65-93 (203)
3 d2csga1 b.82.2.12 (A:3-419) Hy 13.0 28 0.002 11.5 2.8 41 13-53 90-130 (417)
4 d2bfda1 c.36.1.11 (A:6-400) Br 6.6 49 0.0036 9.9 3.8 11 322-332 46-56 (395)
5 d1umda_ c.36.1.11 (A:) Branche 5.9 57 0.0041 9.5 4.0 31 313-343 16-58 (362)
6 d2pa7a1 b.82.1.1 (A:2-136) dTD 5.9 57 0.0042 9.5 3.3 34 596-640 28-61 (135)
7 d2ohwa1 d.79.8.1 (A:3-130) Unc 5.3 60 0.0044 9.3 -0.2 16 317-332 12-27 (128)
8 d1xdza_ c.66.1.20 (A:) Glucose 4.8 74 0.0054 8.7 3.1 60 1-60 2-64 (239)
9 d2imja1 d.17.4.23 (A:5-159) Hy 4.8 60 0.0044 9.3 -0.5 21 301-334 43-63 (155)
10 d1qlsa_ a.39.1.2 (A:) Calcycli 4.5 80 0.0058 8.6 0.7 36 3-41 33-74 (95)
No 1
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.41 E-value=11 Score=14.03 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=7.2
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 55445942589999
Q 005538 319 GRTEIAPDQREKFL 332 (691)
Q Consensus 319 ~r~ei~~dqrek~l 332 (691)
..+++..++.-++.
T Consensus 23 ~~~~lske~ll~~y 36 (361)
T d2ozla1 23 VTTVLTREDGLKYY 36 (361)
T ss_dssp SEEEEEHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
T ss_conf 87888999999999
No 2
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=14.89 E-value=15 Score=13.22 Aligned_cols=28 Identities=36% Similarity=0.623 Sum_probs=14.4
Q ss_pred EEEEECCCCCCCCCCCCCC-EEECCCEEEECHHHHHH
Q ss_conf 5999666667531256722-34347717732103432
Q 005538 653 TYVYFDFHIANDDLQHGWC-QRIKTEFTFEYNYLEDE 688 (691)
Q Consensus 653 sYiyFDpe~~~d~~~~~W~-qr~K~dFtfeY~~LE~~ 688 (691)
++.+|||. +|+ ++.+.-+.|+|+-|-+|
T Consensus 65 t~Y~FDPf--------Gfsd~~L~q~Y~FeY~~llkR 93 (203)
T d1nlna_ 65 TCYLFEPF--------GFSDQRLKQVYQFEYESLLRR 93 (203)
T ss_dssp EEEEECTT--------CCCHHHHHHHHCCCCHHHHHH
T ss_pred EEEEECCC--------CCCHHHHHHHHHHHHHHHHHH
T ss_conf 48887898--------887899999860239889888
No 3
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}
Probab=13.02 E-value=28 Score=11.48 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCC
Q ss_conf 99993558867999999998255543235554665303898
Q 005538 13 DELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPL 53 (691)
Q Consensus 13 d~l~peqV~~ikddld~YvE~NqdDF~e~~d~eelYd~L~l 53 (691)
+-++-+++...+++|..|||.|..++......+.....|+.
T Consensus 90 nV~p~e~a~~w~~~l~~Yle~n~~~~~~~~~~d~~f~~lp~ 130 (417)
T d2csga1 90 GHFPREQALAWDQSMLDYLDKNHFDEVYKGPGDNFFGTLSA 130 (417)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHTTHHHHCCCCCCCTTTTSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 87899999999999999998286420036864310012355
No 4
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.64 E-value=49 Score=9.90 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=4.3
Q ss_pred CCCCHHHHHHH
Q ss_conf 45942589999
Q 005538 322 EIAPDQREKFL 332 (691)
Q Consensus 322 ei~~dqrek~l 332 (691)
+|..|+-.+++
T Consensus 46 ~ls~e~l~~~Y 56 (395)
T d2bfda1 46 HLPKEKVLKLY 56 (395)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 98999999999
No 5
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}
Probab=5.92 E-value=57 Score=9.49 Aligned_cols=31 Identities=16% Similarity=0.452 Sum_probs=16.8
Q ss_pred CCCCCCCC--CCCCCHHHHHHH----------HHHHHHHHHCC
Q ss_conf 98775455--445942589999----------99999998225
Q 005538 313 EPGQFRGR--TEIAPDQREKFL----------QRLQQVQQQGH 343 (691)
Q Consensus 313 e~~q~~~r--~ei~~dqrek~l----------qr~qqvqqq~~ 343 (691)
+.|..++. +++.+++..+.+ .|+.+.+.||.
T Consensus 16 ~~g~~~~~~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~ 58 (362)
T d1umda_ 16 EEGEWLGDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGK 58 (362)
T ss_dssp TTSCBCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9998998789997999999999999999999999999997799
No 6
>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}
Probab=5.89 E-value=57 Score=9.47 Aligned_cols=34 Identities=9% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCEEEECCC
Q ss_conf 897304888620788189999999984237121113315541146
Q 005538 596 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE 640 (691)
Q Consensus 596 fs~ETLFYIFYs~PgD~~QllAA~EL~~RgWRYHKk~k~Wf~R~~ 640 (691)
|...--||++=..+|. -|||.||++...|+.-..
T Consensus 28 f~~kr~~~~~~~~~g~-----------iRG~H~Hk~~~q~~~vi~ 61 (135)
T d2pa7a1 28 FSIKRVYYIFDTKGEE-----------PRGFHAHKKLEQVLVCLN 61 (135)
T ss_dssp SCCCEEEEEESCCSSC-----------CEEEEEESSCCEEEEEEE
T ss_pred CCCCEEEEEECCCCCC-----------EEEEECCCCCCEEEEECC
T ss_conf 4434599996289984-----------783043545308778642
No 7
>d2ohwa1 d.79.8.1 (A:3-130) Uncharacterized protein YueI {Bacillus subtilis [TaxId: 1423]}
Probab=5.28 E-value=60 Score=9.33 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=0.0
Q ss_pred CCCCCCCCCHHHHHHH
Q ss_conf 5455445942589999
Q 005538 317 FRGRTEIAPDQREKFL 332 (691)
Q Consensus 317 ~~~r~ei~~dqrek~l 332 (691)
.+|-+++-||.|-|||
T Consensus 12 ~~G~p~~kPDEqr~yL 27 (128)
T d2ohwa1 12 MYGPLETKPDERHLFL 27 (128)
T ss_dssp CCSCCSSHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHC
T ss_conf 7899989988998844
No 8
>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}
Probab=4.78 E-value=74 Score=8.74 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 9289999864089999--35588679999999982555-432355546653038986000110
Q 005538 1 MKLELILRLLDNDELS--PEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESLE 60 (691)
Q Consensus 1 ~kLE~ilRlLdNd~l~--peqV~~ikddld~YvE~Nqd-DF~e~~d~eelYd~L~lde~e~~~ 60 (691)
|.+|.+.+.|..-.++ .++++.+...++.-++-|+- ...--.+.+++|..+=+|.+..+.
T Consensus 2 m~~e~l~~~l~~~g~~ls~~~~~~l~~y~~lL~~wN~~~NLts~~~~~~i~~rHi~DSl~~~~ 64 (239)
T d1xdza_ 2 MNIEEFTSGLAEKGISLSPRQLEQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAF 64 (239)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHSCCCSCCSHHHHHHHTHHHHHGGGG
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCHHHHHH
T ss_conf 898999999998699999999999999999999846716778469989999986023034565
No 9
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=4.76 E-value=60 Score=9.33 Aligned_cols=21 Identities=48% Similarity=0.778 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 3346997788889877545544594258999999
Q 005538 301 QWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQR 334 (691)
Q Consensus 301 qwrp~~~~qnq~e~~q~~~r~ei~~dqrek~lqr 334 (691)
.|| |.+|- +.||.|| ..||+|
T Consensus 43 ~WR------NR~eF--~~GR~~I-----~~FL~~ 63 (155)
T d2imja1 43 QWR------NRAEF--AHNREEA-----KAFLTR 63 (155)
T ss_dssp EEE------ETTEE--ECSHHHH-----HHHHHH
T ss_pred CCC------CCHHH--HCCHHHH-----HHHHHH
T ss_conf 677------82043--1778999-----999998
No 10
>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]}
Probab=4.52 E-value=80 Score=8.55 Aligned_cols=36 Identities=19% Similarity=0.515 Sum_probs=0.0
Q ss_pred HHHHHHH-----HHCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCC
Q ss_conf 8999986-----408999935588679999999982555-43235
Q 005538 3 LELILRL-----LDNDELSPEQVNDVKDLLEDYVERNQD-DFEEF 41 (691)
Q Consensus 3 LE~ilRl-----LdNd~l~peqV~~ikddld~YvE~Nqd-DF~e~ 41 (691)
|..+|+. |.+-. +|+.|+.|-+++| ...++. ||.||
T Consensus 33 lk~Ll~~El~~~l~~~~-d~~~vd~im~~LD--~n~Dg~vdF~EF 74 (95)
T d1qlsa_ 33 FLIFMNTELAAFTQNQK-DPGVLDRMMKKLD--LDSDGQLDFQEF 74 (95)
T ss_dssp HHHHHTTTSHHHHHHCC-CTHHHHHHHHHHC--TTCSSSBCHHHH
T ss_pred HHHHHHHHHHHHHCCCC-CHHHHHHHHHHHC--CCCCCCCCHHHH
T ss_conf 99999998789865899-8899999999865--799995969999
Done!