Query 005540
Match_columns 691
No_of_seqs 335 out of 2109
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 01:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 4E-131 9E-136 1112.1 54.7 520 147-691 104-636 (636)
2 KOG2287 Galactosyltransferases 100.0 4.9E-61 1.1E-65 517.8 28.6 334 350-691 4-349 (349)
3 PLN03193 beta-1,3-galactosyltr 100.0 6.8E-49 1.5E-53 423.4 19.6 240 390-655 103-355 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 6.8E-44 1.5E-48 353.9 17.1 183 458-642 1-190 (195)
5 PTZ00210 UDP-GlcNAc-dependent 100.0 1.8E-34 3.9E-39 307.8 19.7 227 442-683 78-358 (382)
6 KOG2288 Galactosyltransferases 100.0 1.9E-34 4.2E-39 292.0 18.0 241 441-689 8-271 (274)
7 smart00276 GLECT Galectin. Gal 100.0 3.3E-29 7.2E-34 234.4 16.3 127 202-412 1-127 (128)
8 cd00070 GLECT Galectin/galacto 100.0 1.2E-28 2.6E-33 230.1 15.4 126 201-410 1-126 (127)
9 PF00337 Gal-bind_lectin: Gala 100.0 1E-28 2.2E-33 231.4 14.7 132 201-412 1-133 (133)
10 KOG3587 Galectin, galactose-bi 99.9 2.5E-24 5.4E-29 205.7 15.2 137 200-414 4-140 (143)
11 PF02434 Fringe: Fringe-like; 99.7 2.7E-17 5.8E-22 171.0 10.7 183 445-642 7-198 (252)
12 KOG2246 Galactosyltransferases 99.5 3.1E-14 6.8E-19 155.0 13.0 168 442-642 89-264 (364)
13 PLN03153 hypothetical protein; 99.0 3.4E-09 7.3E-14 118.6 13.9 98 532-642 208-308 (537)
14 KOG3708 Uncharacterized conser 97.6 0.00039 8.5E-09 77.8 11.1 195 445-681 27-244 (681)
15 PF13641 Glyco_tranf_2_3: Glyc 95.3 0.3 6.5E-06 48.6 13.1 184 446-642 3-198 (228)
16 PF01755 Glyco_transf_25: Glyc 93.9 0.93 2E-05 45.0 12.7 93 448-550 4-101 (200)
17 TIGR03472 HpnI hopanoid biosyn 93.9 1.7 3.7E-05 47.8 15.9 185 446-642 43-241 (373)
18 cd02520 Glucosylceramide_synth 93.8 2.7 5.8E-05 41.3 15.5 132 478-642 31-165 (196)
19 cd04192 GT_2_like_e Subfamily 92.4 5.6 0.00012 39.0 15.5 132 503-641 54-195 (229)
20 cd04184 GT2_RfbC_Mx_like Myxoc 91.6 13 0.00029 35.8 17.0 113 524-642 73-189 (202)
21 PRK14583 hmsR N-glycosyltransf 91.4 5.6 0.00012 44.9 15.9 153 477-642 104-269 (444)
22 cd04186 GT_2_like_c Subfamily 91.2 7.3 0.00016 35.9 14.0 84 529-642 69-153 (166)
23 cd02525 Succinoglycan_BP_ExoA 90.9 18 0.0004 35.9 18.3 155 477-642 31-196 (249)
24 cd04196 GT_2_like_d Subfamily 90.8 5.1 0.00011 38.9 13.1 170 461-640 11-190 (214)
25 PRK11204 N-glycosyltransferase 90.7 13 0.00028 41.3 17.6 148 483-642 88-248 (420)
26 cd06435 CESA_NdvC_like NdvC_li 90.6 5.3 0.00012 39.9 13.3 137 524-679 72-220 (236)
27 cd06439 CESA_like_1 CESA_like_ 90.2 14 0.00031 37.2 16.2 181 444-642 29-217 (251)
28 PF13506 Glyco_transf_21: Glyc 89.5 0.49 1.1E-05 46.9 4.8 118 520-642 17-142 (175)
29 cd04187 DPM1_like_bac Bacteria 89.5 3.3 7.2E-05 39.7 10.4 132 478-615 30-164 (181)
30 cd06421 CESA_CelA_like CESA_Ce 89.0 1.5 3.2E-05 43.6 7.8 112 526-642 76-199 (234)
31 cd06434 GT2_HAS Hyaluronan syn 88.9 4.5 9.7E-05 40.3 11.3 139 498-642 47-201 (235)
32 TIGR03469 HonB hopene-associat 88.9 4 8.7E-05 45.2 11.8 105 534-642 133-250 (384)
33 cd02510 pp-GalNAc-T pp-GalNAc- 88.8 18 0.00038 38.2 16.2 117 524-642 73-213 (299)
34 cd06433 GT_2_WfgS_like WfgS an 88.4 2.5 5.3E-05 40.3 8.7 115 524-642 65-182 (202)
35 PF00535 Glycos_transf_2: Glyc 88.1 4.6 0.0001 36.8 10.0 120 489-613 38-168 (169)
36 cd06420 GT2_Chondriotin_Pol_N 87.6 11 0.00024 35.7 12.6 99 525-642 70-168 (182)
37 cd04185 GT_2_like_b Subfamily 87.5 10 0.00022 36.9 12.5 92 524-642 70-162 (202)
38 cd06423 CESA_like CESA_like is 87.0 5.5 0.00012 36.2 9.7 91 524-614 68-170 (180)
39 cd06532 Glyco_transf_25 Glycos 86.8 4.2 9.2E-05 38.0 8.9 110 448-616 2-116 (128)
40 COG1216 Predicted glycosyltran 86.0 25 0.00054 37.5 15.5 135 503-642 55-208 (305)
41 COG1215 Glycosyltransferases, 85.7 33 0.00071 37.8 16.8 191 444-649 54-258 (439)
42 cd06427 CESA_like_2 CESA_like_ 84.3 28 0.0006 35.3 14.3 114 524-642 74-200 (241)
43 cd04191 Glucan_BSP_ModH Glucan 83.8 9.1 0.0002 40.2 10.7 187 448-642 3-219 (254)
44 PF13632 Glyco_trans_2_3: Glyc 82.5 5.1 0.00011 39.0 7.8 100 537-642 1-112 (193)
45 cd04195 GT2_AmsE_like GT2_AmsE 82.5 18 0.00039 35.0 11.6 140 489-642 41-189 (201)
46 PLN02726 dolichyl-phosphate be 82.0 60 0.0013 33.0 15.7 111 525-642 84-206 (243)
47 cd02526 GT2_RfbF_like RfbF is 80.5 64 0.0014 32.0 17.5 106 534-642 75-192 (237)
48 cd04179 DPM_DPG-synthase_like 77.5 15 0.00034 34.8 9.2 116 493-614 43-167 (185)
49 cd04188 DPG_synthase DPG_synth 77.2 28 0.0006 34.3 11.1 159 478-648 31-205 (211)
50 PRK14716 bacteriophage N4 adso 71.5 38 0.00083 39.4 11.9 139 534-678 158-314 (504)
51 PF10111 Glyco_tranf_2_2: Glyc 71.1 1.2E+02 0.0027 31.9 14.9 159 477-642 34-210 (281)
52 TIGR01556 rhamnosyltran L-rham 66.5 89 0.0019 32.5 12.5 114 525-642 65-189 (281)
53 PF04646 DUF604: Protein of un 65.9 8.3 0.00018 40.9 4.6 43 599-642 12-57 (255)
54 cd06442 DPM1_like DPM1_like re 65.8 60 0.0013 31.8 10.6 87 525-614 69-167 (224)
55 PRK10714 undecaprenyl phosphat 64.1 1.2E+02 0.0026 32.9 13.4 130 477-615 38-174 (325)
56 TIGR03030 CelA cellulose synth 62.8 1.7E+02 0.0036 35.6 15.4 120 517-642 212-346 (713)
57 PRK11498 bcsA cellulose syntha 57.9 1.4E+02 0.0029 37.3 13.5 117 520-642 326-457 (852)
58 cd00761 Glyco_tranf_GTA_type G 56.4 1.4E+02 0.003 26.1 13.4 83 524-640 67-151 (156)
59 cd02522 GT_2_like_a GT_2_like_ 54.6 2.1E+02 0.0046 27.8 15.4 106 526-642 64-175 (221)
60 PRK05454 glucosyltransferase M 53.4 1.5E+02 0.0033 36.1 12.7 198 443-650 123-350 (691)
61 cd06437 CESA_CaSu_A2 Cellulose 53.2 2.4E+02 0.0053 28.0 16.3 113 525-642 78-201 (232)
62 cd02514 GT13_GLCNAC-TI GT13_GL 52.6 1.1E+02 0.0024 33.9 10.5 83 525-613 88-174 (334)
63 PF00853 Runt: Runt domain; I 48.4 22 0.00047 33.9 3.7 30 339-379 87-125 (135)
64 cd04190 Chitin_synth_C C-termi 44.8 36 0.00078 34.9 5.1 111 532-642 71-208 (244)
65 KOG1594 Uncharacterized enzyme 41.8 84 0.0018 33.9 7.2 118 252-409 65-189 (305)
66 PRK11234 nfrB bacteriophage N4 41.3 7.4E+02 0.016 30.5 16.1 158 477-642 93-274 (727)
67 cd06438 EpsO_like EpsO protein 31.7 4.7E+02 0.01 25.0 10.6 77 533-612 80-169 (183)
68 COG4092 Predicted glycosyltran 29.9 1.6E+02 0.0034 32.0 6.9 67 491-557 49-117 (346)
69 TIGR03111 glyc2_xrt_Gpos1 puta 28.9 8.9E+02 0.019 27.4 14.4 111 524-639 121-251 (439)
70 KOG3982 Runt and related trans 28.2 56 0.0012 36.5 3.4 29 201-229 103-131 (475)
71 PTZ00260 dolichyl-phosphate be 26.0 8.9E+02 0.019 26.4 16.7 116 526-647 154-288 (333)
72 cd06913 beta3GnTL1_like Beta 1 24.3 2.7E+02 0.0058 27.5 7.4 34 526-559 76-109 (219)
73 COG3306 Glycosyltransferase in 20.1 2.7E+02 0.0058 29.7 6.6 169 448-636 5-192 (255)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.1e-131 Score=1112.08 Aligned_cols=520 Identities=39% Similarity=0.695 Sum_probs=479.8
Q ss_pred hHHHHHHHHHHHHHHhHHhhccccc-cc-ccc--CCCCCCCCCCCCccc-cccccccCCCceEEeCCCCCCCcEEEEEEE
Q 005540 147 LERMADEAWTLGLKAWDEVDKFDVK-ET-VSS--NVYEGKPESCPSWLS-MSGEELANGDRLMFLPCGLAAGSSITVVGT 221 (691)
Q Consensus 147 ~~~~a~~~~~~~~~~w~~l~~~~~~-~~-~~~--~~~~~~~~~cp~sv~-~~~~~~~~~~~~~~lPcGL~~Gs~itV~G~ 221 (691)
....|.+||+||+.||++|.+++++ .+ ..+ +..+.++.+||+||+ |+++++..+++.+.|||||++|++|||+|+
T Consensus 104 ~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~iP~GL~~Gs~ItI~G~ 183 (636)
T PLN03133 104 VLPNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEKQCPYFLNKMNATELGDSGYKLKIPCGLTQGSSITIIGI 183 (636)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhhhhcccccccCCceEEecCCcCCCCCEEEEEEE
Confidence 3456789999999999999998773 22 222 223556789999999 999999988999999999999999999999
Q ss_pred cCCCcccccchhhhccCCCCcceeeeEEEEecCCcCCCCCCCCeeEEEeeeeCCCCC-CCCEEEEeCcc-CCccccceec
Q 005540 222 PHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWS-HRPVIEHNTCY-RMQWGTAQRC 299 (691)
Q Consensus 222 p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~-~~pvIv~NT~~-~~~WG~eeRc 299 (691)
|+.. +++|+|||+|+..++++++||||||||||+|||+ ++|+||||||+ +|+||+||||
T Consensus 184 p~~~-------------------~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~~~WG~EERc 244 (636)
T PLN03133 184 PDGL-------------------LGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAAHDWGEEERC 244 (636)
T ss_pred eCCC-------------------CCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCCCcccHhhhc
Confidence 9974 3599999999877666788999999999999975 79999999999 9999999999
Q ss_pred CCCCCCCCcccccchhhhhhhccccCccccccccccccccccc-cccCCCCCCCCCCCCCCCeEEEEEEEccceEEEEeC
Q 005540 300 DGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFI-GREQKPEVTWPFPFVEGRLFILTLRAGVEGYHINVG 378 (691)
Q Consensus 300 ~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fPF~~g~~F~lti~~g~egfhv~Vn 378 (691)
+||+|++|+ +||||++||||+++++.++++++++||+||+| ++++++..+|+|||++|++|++||+||.|||||+||
T Consensus 245 ~~~~~~~~~--~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~Vn 322 (636)
T PLN03133 245 PSPDPDKNK--KVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQMTVD 322 (636)
T ss_pred CCCCccccc--cccchhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcEEEEEEecCCEEEEEEC
Confidence 999999995 89999999999999999999999999999998 778899999999999999999999999999999999
Q ss_pred CeEEEEeccccCCCccceeEEEEcccccceeeecccCCCCCCCccchhhhhhhhhhcCCCCC-CCCcEEEEEEeCCCCCH
Q 005540 379 GRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLP-ARPVHLFIGVLSATNHF 457 (691)
Q Consensus 379 G~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV~a~sLP~s~~sf~~~~~~e~~~~~kappl~-~~~v~LLI~V~Sap~nf 457 (691)
|+|+|||+||+++++|.|++|+|+|||+|+||.+.++|++||+ .|.++.+.|++||++ +++++|||+|+|+|+||
T Consensus 323 G~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~----~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~nf 398 (636)
T PLN03133 323 GKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDS----EHVIDLEALKSPPLSPKKPLDLFIGVFSTANNF 398 (636)
T ss_pred CeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCch----hcccchHHhcCCCCCCCCceEEEEEEeCCcccH
Confidence 9999999999999999999999999999999999999999986 577789999999988 46799999999999999
Q ss_pred HHHHHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhhccCcEEEecccccccchhHHHHHHHHHHhhcCCceE
Q 005540 458 AERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAY 537 (691)
Q Consensus 458 ~rR~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akf 537 (691)
+||+|||+|||+...+++..++++|+||.+.+..++..|++|+++||||||+||+|+|+|+|+||++++.|+.+|++++|
T Consensus 399 ~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akF 478 (636)
T PLN03133 399 KRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAKY 478 (636)
T ss_pred HHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCceE
Confidence 99999999999987767778999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCcccc--ccccccccCCCCCCCCCCCCCCeeEeCHHHHHHHHH
Q 005540 538 IMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVL 615 (691)
Q Consensus 538 vmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~--sKwyVs~eeyp~~~YPpY~~G~GYVLS~Dva~~Iv~ 615 (691)
|||+|||+|||+++|+++|+.....+.+|+|++..+.+|+|+ +|||||+++||++.|||||+|+|||||+|+|+.|+.
T Consensus 479 ilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~Dla~~L~~ 558 (636)
T PLN03133 479 VMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYK 558 (636)
T ss_pred EEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcHHHHHHHHH
Confidence 999999999999999999988776678999999999999997 999999999999999999999999999999999998
Q ss_pred HhcCCccCCCCCChHHHHHHHHHcCCC-CCcccccCCccccCCcCCceEEEecCCHHHHHHHHHHhhCC-CCCCCCCC
Q 005540 616 QHGNQSLRLFKMEDVSMGMWVEQFNST-MTVRYSHSWKFCQYGCMEGYYTAHYQSPRQMICLWDKLSRG-RAHCCNFR 691 (691)
Q Consensus 616 ~~~~~~l~~f~~EDV~iGi~l~~lgi~-~pV~y~h~~~fc~~~C~~~~it~H~~sP~~M~~lW~~L~~g-~~~Cc~~~ 691 (691)
...+..+++|++||||||+|+++++.. .++.|.|+.++|..+|.+++|++|+++|.+|+++|++|+++ +++|||++
T Consensus 559 ~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~H~~sP~eM~~lW~~l~~~~~~~Cc~~~ 636 (636)
T PLN03133 559 RHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVAHYQSPREMLCLWQKLQEGKRATCCGEW 636 (636)
T ss_pred hhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEEecCCHHHHHHHHHHHhccCCCCccCCC
Confidence 644568999999999999999876533 25778899999999999999999999999999999999975 59999975
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-61 Score=517.81 Aligned_cols=334 Identities=34% Similarity=0.543 Sum_probs=300.9
Q ss_pred CCCCCCCCCCCeEEEEEEEccceEEEEeCCeEEEEeccccCCCccceeEEEEcccccceeeecccCCCCCCCccchhhhh
Q 005540 350 VTWPFPFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLE 429 (691)
Q Consensus 350 ~~~~fPF~~g~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV~a~sLP~s~~sf~~~~~~e 429 (691)
..+.+|+..+..|+.++.++.+++++.++++|.++|.++..++.+..++...++.+..+.....+++.+...+....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (349)
T KOG2287|consen 4 KEFLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQKFFYLL 83 (349)
T ss_pred ccccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhccChhhh
Confidence 34679999999999999999999999999999999999998888999999999999888888888888887765443343
Q ss_pred hhhhhcCCCCCCC--CcEEEEEEeCCCCCHHHHHHHHHHhccccccCCCcEEEEEEEeeCCCh-hhHHHHHHhhhccCcE
Q 005540 430 MSSKWKAEPLPAR--PVHLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRK-EVNAVLKKEAAFFGDI 506 (691)
Q Consensus 430 ~~~~~kappl~~~--~v~LLI~V~Sap~nf~rR~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~-~~~~~L~~Eae~ygDI 506 (691)
..|+.|.. +++|+|+|+|+++|++||++||+|||++..+++++++++|+||.+.++ .++++|++|++.||||
T Consensus 84 -----~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDI 158 (349)
T KOG2287|consen 84 -----YLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDI 158 (349)
T ss_pred -----cCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCE
Confidence 23333322 489999999999999999999999999999899999999999998865 5689999999999999
Q ss_pred EEecccccccchhHHHHHHHHHHhh-cCCceEEEEecCcccccHHHHHHHHHhc-CCCCceEEEeeccCCCcccc--ccc
Q 005540 507 VILPFMDRYELVVLKTIAICEFGVQ-NVTAAYIMKCDDDTFIRVDAVLKEIEGI-FPKRSLYMGNLNLLHRPLRT--GKW 582 (691)
Q Consensus 507 I~~df~DsY~NLtlKTla~l~w~~~-~~~akfvmKvDDDtfVnvd~Ll~~L~~~-~~~~~lY~G~v~~~~~PiR~--sKw 582 (691)
|++||.|+|+|+|+||+++++|+.. |++++||||+|||+|||+++|+++|++. ++...+|+|++.....|+|+ +||
T Consensus 159 i~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~Kw 238 (349)
T KOG2287|consen 159 IQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKW 238 (349)
T ss_pred EEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCC
Confidence 9999999999999999999999997 6689999999999999999999999998 78889999999999999997 899
Q ss_pred cccccCCCCCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHc-CCCCCcccccCCc---cccCCc
Q 005540 583 AVTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQF-NSTMTVRYSHSWK---FCQYGC 658 (691)
Q Consensus 583 yVs~eeyp~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~l-gi~~pV~y~h~~~---fc~~~C 658 (691)
|||+++||++.|||||+|+|||+|+|+|+.|+++ +.+.+++++|||++|+|+++. ||. |+++.+... .|+.+|
T Consensus 239 yVp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~--s~~~~~~~iEDV~~g~~l~~~~gi~-~~~~~~~~~~~~~~~~~~ 315 (349)
T KOG2287|consen 239 YVPESEYPCSVYPPYASGPGYVISGDAARRLLKA--SKHLKFFPIEDVFVGGCLAEDLGIK-PVNHPGFFEIPLSFDPCC 315 (349)
T ss_pred ccCHHHCCCCCCCCcCCCceeEecHHHHHHHHHH--hcCCCccchHHHHHHHHHHHhcCCC-cccCcccccccccCCCCc
Confidence 9999999999999999999999999999999996 788899999999999999998 887 777665333 346778
Q ss_pred CCceEEEecCCHHHHHHHHHHhhC-CCCCCCCCC
Q 005540 659 MEGYYTAHYQSPRQMICLWDKLSR-GRAHCCNFR 691 (691)
Q Consensus 659 ~~~~it~H~~sP~~M~~lW~~L~~-g~~~Cc~~~ 691 (691)
..+++++|+++|.+|.++|++++. .+..||+.+
T Consensus 316 ~~~~~~~H~~~p~e~~~~w~~~~~~~~~~c~~~~ 349 (349)
T KOG2287|consen 316 YRDLLAVHRLSPNEMIYLWKKLKDLANLKCKNLR 349 (349)
T ss_pred ccceEEEecCCHHHHHHHHHHhhcccccccccCC
Confidence 899999999999999999999998 888998864
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=6.8e-49 Score=423.39 Aligned_cols=240 Identities=23% Similarity=0.349 Sum_probs=205.6
Q ss_pred CCCccceeEEEEcccccceeeecccCCCCCCCccchhhhhhhhhhcCCCCCCCCcEEEEEEeCCCCCHHHHHHHHHHhcc
Q 005540 390 GFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLPARPVHLFIGVLSATNHFAERMAIRKTWMQ 469 (691)
Q Consensus 390 ~~~l~~v~~l~v~GDv~l~sV~a~sLP~s~~sf~~~~~~e~~~~~kappl~~~~v~LLI~V~Sap~nf~rR~aIR~TW~~ 469 (691)
++++|.+++.+ +.++.+.++|.++++= .+ +...+++++|+|+|+|+++|++||++||+|||+
T Consensus 103 ~le~el~~~~~------~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~ 164 (408)
T PLN03193 103 NLEMELAAARA------AQESILNGSPISEDLK----------KT--QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMP 164 (408)
T ss_pred HHhHHHHHHHh------hhhhhccCCCcccccc----------cc--CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcC
Confidence 44677777766 6666677788877641 11 233456799999999999999999999999998
Q ss_pred cccc-----CCCcEEEEEEEeeCC--ChhhHHHHHHhhhccCcEEEecccccccchhHHHHHHHHHHhhcCCceEEEEec
Q 005540 470 SSKI-----KSSNVVARFFVALNP--RKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCD 542 (691)
Q Consensus 470 ~~~i-----~~~~v~vrFfVG~~~--~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvD 542 (691)
.... ...+++++|+||.+. +..++.+|.+|+++|||||++||+|+|.|||+||+++|+|+.++++++||||+|
T Consensus 165 ~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~D 244 (408)
T PLN03193 165 QGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVD 244 (408)
T ss_pred CcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcC
Confidence 6542 236799999999986 568899999999999999999999999999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHhcCCCCceEEEeeccCCCcccc--ccccccccCC----CCCCCCCCCCCCeeEeCHHHHHHHHHH
Q 005540 543 DDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKWAVTYEEW----PQEVYPPYANGPGYVISSDIAKFIVLQ 616 (691)
Q Consensus 543 DDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~--sKwyVs~eey----p~~~YPpY~~G~GYVLS~Dva~~Iv~~ 616 (691)
||+|||+++|+.+|+......++|+|++.. .|+|+ ++||+++++| +.+.|||||.|+|||||+|+|+.|+.+
T Consensus 245 DDvfVnv~~L~~~L~~~~~~~rlYiG~m~~--gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n 322 (408)
T PLN03193 245 DDVHVNIATLGETLVRHRKKPRVYIGCMKS--GPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISIN 322 (408)
T ss_pred CCceEcHHHHHHHHHhcCCCCCEEEEeccc--CccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhC
Confidence 999999999999998776556799999975 47885 6777777888 568999999999999999999999975
Q ss_pred hcCCccCCCCCChHHHHHHHHHcCCCCCcccccCCcccc
Q 005540 617 HGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKFCQ 655 (691)
Q Consensus 617 ~~~~~l~~f~~EDV~iGi~l~~lgi~~pV~y~h~~~fc~ 655 (691)
...++.|++|||+||+|+..++ |+|+|+.+||.
T Consensus 323 --~~~L~~y~~EDV~vG~Wl~~L~----V~~vdd~~fcc 355 (408)
T PLN03193 323 --QHVLHKYANEDVSLGSWFIGLD----VEHIDDRRLCC 355 (408)
T ss_pred --hhhhcccCcchhhhhhHhccCC----ceeeecccccC
Confidence 4678899999999999997666 67899999986
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=6.8e-44 Score=353.93 Aligned_cols=183 Identities=33% Similarity=0.602 Sum_probs=170.6
Q ss_pred HHHHHHHHHhccccccCCCcEEEEEEEeeCC--ChhhHHHHHHhhhccCcEEEecccccccchhHHHHHHHHHHhhcC-C
Q 005540 458 AERMAIRKTWMQSSKIKSSNVVARFFVALNP--RKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNV-T 534 (691)
Q Consensus 458 ~rR~aIR~TW~~~~~i~~~~v~vrFfVG~~~--~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~-~ 534 (691)
+||++||+||++....++.+++++|+||.++ +..++..|.+|+++|+||||+||.|+|.|+|+||+++++|+.++| +
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999999877789999999999988 778888999999999999999999999999999999999999876 5
Q ss_pred ceEEEEecCcccccHHHHHHHHHhc--CCCCceEEEeeccCCCcccc--ccccccccCCCCCCCCCCCCCCeeEeCHHHH
Q 005540 535 AAYIMKCDDDTFIRVDAVLKEIEGI--FPKRSLYMGNLNLLHRPLRT--GKWAVTYEEWPQEVYPPYANGPGYVISSDIA 610 (691)
Q Consensus 535 akfvmKvDDDtfVnvd~Ll~~L~~~--~~~~~lY~G~v~~~~~PiR~--sKwyVs~eeyp~~~YPpY~~G~GYVLS~Dva 610 (691)
++||+|+|||+|||+++|.++|... ......++|.+....+|+|+ +|||+|+++||.+.|||||+|+||+||+++|
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v 160 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSDVV 160 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEecHHHH
Confidence 9999999999999999999999987 45567778888888889996 8999999999999999999999999999999
Q ss_pred HHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 611 KFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 611 ~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
+.|+.. +..++++++|||++|+|++++||+
T Consensus 161 ~~i~~~--~~~~~~~~~eDv~iGi~~~~~~i~ 190 (195)
T PF01762_consen 161 KRIYKA--SSHTPFFPLEDVFIGILAEKLGIK 190 (195)
T ss_pred HHHHHH--hhcCCCCCchHHHHHHHHHHCCCC
Confidence 999996 567799999999999999999987
No 5
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=1.8e-34 Score=307.84 Aligned_cols=227 Identities=25% Similarity=0.284 Sum_probs=187.3
Q ss_pred CCcEEEEEEeCCCCC--HHHHHHHHHHhccccccC------CCcEEEEEEEeeCCCh--hhHHHHHHhhhccCcEEEecc
Q 005540 442 RPVHLFIGVLSATNH--FAERMAIRKTWMQSSKIK------SSNVVARFFVALNPRK--EVNAVLKKEAAFFGDIVILPF 511 (691)
Q Consensus 442 ~~v~LLI~V~Sap~n--f~rR~aIR~TW~~~~~i~------~~~v~vrFfVG~~~~~--~~~~~L~~Eae~ygDII~~df 511 (691)
.+-.+++||+|..++ +.||++.|+||++...+. .+.+.++||+|++++. +.+++|++|+++|+|||++||
T Consensus 78 ~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilpf 157 (382)
T PTZ00210 78 QRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLPT 157 (382)
T ss_pred CCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEec
Confidence 567899999999999 999999999999998875 6788999999999877 999999999999999999999
Q ss_pred ------------------cccccchhHHHHHHHHHHhhcC-CceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeecc
Q 005540 512 ------------------MDRYELVVLKTIAICEFGVQNV-TAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNL 572 (691)
Q Consensus 512 ------------------~DsY~NLtlKTla~l~w~~~~~-~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~ 572 (691)
.|+|.++|+||+++|+|+.+.| +++||||+|||+|||+++++++|+..+. ..+|+|++..
T Consensus 158 ~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~pr-r~LY~G~v~~ 236 (382)
T PTZ00210 158 NDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVMPR-HGLYMGRYNY 236 (382)
T ss_pred ccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhCCC-CceEEEeeCC
Confidence 6666789999999999999865 9999999999999999999999977654 5699999998
Q ss_pred CCCccccccccccccCCCCCCCCCCCCCCeeEeCHHHHHHHHHHhcCCcc---------------CCCCCChHHHHHHHH
Q 005540 573 LHRPLRTGKWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSL---------------RLFKMEDVSMGMWVE 637 (691)
Q Consensus 573 ~~~PiR~sKwyVs~eeyp~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l---------------~~f~~EDV~iGi~l~ 637 (691)
..+|.|++ +||||+|+||+||+|+|+.|++.....++ -.+..||+++|.+++
T Consensus 237 ~~~p~Rd~-------------~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr 303 (382)
T PTZ00210 237 YNRIWRRN-------------QLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILR 303 (382)
T ss_pred CCccccCC-------------CCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHH
Confidence 87787753 49999999999999999999986322233 345779999999995
Q ss_pred -HcCCCCCcccc-------cCCc--cccCCcCCceEEEecCCHHHHHHHHHHhhCC
Q 005540 638 -QFNSTMTVRYS-------HSWK--FCQYGCMEGYYTAHYQSPRQMICLWDKLSRG 683 (691)
Q Consensus 638 -~lgi~~pV~y~-------h~~~--fc~~~C~~~~it~H~~sP~~M~~lW~~L~~g 683 (691)
+++.. ++-|+ |+.+ .|...-..+.|.+|...+++-..+-..+++.
T Consensus 304 ~~~k~~-~l~~V~~~~c~Fhd~~~~~~~~~v~~~sVvvHhike~dYa~Lm~~F~n~ 358 (382)
T PTZ00210 304 EKVVYR-NLISVEMGRCHFHNAGKFGVRKSVRNMSVVIHHIQEADYEMLMDYFPEG 358 (382)
T ss_pred HhcCcC-ceeeeccccccceecCCCCCccccccceEEEEecCHHHHHHHHHHhcCC
Confidence 44443 44333 2221 1111124678999999999988888887753
No 6
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-34 Score=291.96 Aligned_cols=241 Identities=28% Similarity=0.451 Sum_probs=205.1
Q ss_pred CCCcEEEEEEeCCCCCHHHHHHHHHHhccccc----c-CCCcEEEEEEEee-CCChhhHHHHHHhhhccCcEEEec-ccc
Q 005540 441 ARPVHLFIGVLSATNHFAERMAIRKTWMQSSK----I-KSSNVVARFFVAL-NPRKEVNAVLKKEAAFFGDIVILP-FMD 513 (691)
Q Consensus 441 ~~~v~LLI~V~Sap~nf~rR~aIR~TW~~~~~----i-~~~~v~vrFfVG~-~~~~~~~~~L~~Eae~ygDII~~d-f~D 513 (691)
+..++++|+|.|+++...||+++|+|||.... . ...+|.+||++|. +.+.+...+|++|.++|+|.+++| .+|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 45789999999999999999999999998722 1 3678999999998 567888999999999999999999 999
Q ss_pred cccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCccc-cccccccccCCC-C
Q 005540 514 RYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLR-TGKWAVTYEEWP-Q 591 (691)
Q Consensus 514 sY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR-~sKwyVs~eeyp-~ 591 (691)
.|.+|+.||+++|.++..+.+++|++|+|||+|||++.|...|........+|+|++..+..+.+ .+|||-|+ |. .
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe--Wkfg 165 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE--WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh--hhcC
Confidence 99999999999999999999999999999999999999999999987778899999998877777 58999996 54 3
Q ss_pred CC--CCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCCCCcccccCCccccCCc--CCceEEEec
Q 005540 592 EV--YPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKFCQYGC--MEGYYTAHY 667 (691)
Q Consensus 592 ~~--YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~~pV~y~h~~~fc~~~C--~~~~it~H~ 667 (691)
+. |.+|+.|++|+||+|++..|.-+ ...+..+..|||.+|.|+..++ |+|+|+.++|...| ..+.+.++.
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in--~~lL~~y~nEDVSlGaW~~gld----V~h~dd~rlC~~~~~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISIN--RQLLHKYANEDVSLGAWMIGLD----VEHVDDPRLCCSTPKALAGMVCAAS 239 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHh--HHHHHhhccCCcccceeeeeee----eeEecCCcccccchhhhccceeeee
Confidence 44 99999999999999999999875 4557889999999999998776 67899999998777 334444332
Q ss_pred C---------CHHHHHHHHHHhhC-CCCCCCC
Q 005540 668 Q---------SPRQMICLWDKLSR-GRAHCCN 689 (691)
Q Consensus 668 ~---------sP~~M~~lW~~L~~-g~~~Cc~ 689 (691)
. +..+|...+..=-. ..+.||.
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~ 271 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCS 271 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCc
Confidence 2 34667777765443 5567774
No 7
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.96 E-value=3.3e-29 Score=234.37 Aligned_cols=127 Identities=34% Similarity=0.501 Sum_probs=117.0
Q ss_pred ceEEeCCCCCCCcEEEEEEEcCCCcccccchhhhccCCCCcceeeeEEEEecCCcCCCCCCCCeeEEEeeeeCCCCCCCC
Q 005540 202 RLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSHRP 281 (691)
Q Consensus 202 ~~~~lPcGL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~~p 281 (691)
+...||+||.+|+.|+|.|+|...+ ++|.|||+.+. ++++|||||||.++
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~~-------------------~~F~inl~~~~------~di~lH~n~rf~~~----- 50 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPDA-------------------KRFSINLLTGG------DDIALHFNPRFNEN----- 50 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCCC-------------------CEEEEEeecCC------CCEEEEEeccCCCC-----
Confidence 3568999999999999999999864 39999999732 57999999999976
Q ss_pred EEEEeCccCCccccceecCCCCCCCCcccccchhhhhhhccccCccccccccccccccccccccCCCCCCCCCCCCCCCe
Q 005540 282 VIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEGRL 361 (691)
Q Consensus 282 vIv~NT~~~~~WG~eeRc~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g~~ 361 (691)
+||+||+.+|.||.|||+ ..|||.+|++
T Consensus 51 ~iV~Ns~~~g~Wg~Eer~----------------------------------------------------~~~Pf~~g~~ 78 (128)
T smart00276 51 KIVCNSKLNGSWGSEERE----------------------------------------------------GGFPFQPGQP 78 (128)
T ss_pred EEEEeCccCCccchheEc----------------------------------------------------CCCCCCCCCE
Confidence 999999999999999998 4799999999
Q ss_pred EEEEEEEccceEEEEeCCeEEEEeccccCCCccceeEEEEcccccceeeec
Q 005540 362 FILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYA 412 (691)
Q Consensus 362 F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV~a 412 (691)
|+|+|.++.++|+|+|||+|+++|+||. ++++|+.|.|.||++|++|..
T Consensus 79 F~l~i~~~~~~f~i~vng~~~~~f~~R~--~~~~i~~l~v~Gdv~l~~v~~ 127 (128)
T smart00276 79 FDLTIIVQPDHFQIFVNGVHITTFPHRL--PLESIDYLSINGDVQLTSVSF 127 (128)
T ss_pred EEEEEEEcCCEEEEEECCEeEEEecCCC--CcccEeEEEEeCCEEEEEEEE
Confidence 9999999999999999999999999999 679999999999999999864
No 8
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.96 E-value=1.2e-28 Score=230.06 Aligned_cols=126 Identities=37% Similarity=0.557 Sum_probs=116.4
Q ss_pred CceEEeCCCCCCCcEEEEEEEcCCCcccccchhhhccCCCCcceeeeEEEEecCCcCCCCCCCCeeEEEeeeeCCCCCCC
Q 005540 201 DRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSHR 280 (691)
Q Consensus 201 ~~~~~lPcGL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~~ 280 (691)
++...|||||.+|+.|+|.|+|...+ ++|.|||+.+. .+++|||||||..+
T Consensus 1 p~~~~l~~~l~~G~~i~i~G~~~~~~-------------------~~f~Inl~~~~------~~i~lH~n~rf~~~---- 51 (127)
T cd00070 1 PYKLPLPGGLKPGSTLTVKGRVLPNA-------------------KRFSINLGTGS------SDIALHFNPRFDEN---- 51 (127)
T ss_pred CcccccCCCCcCCCEEEEEEEECCCC-------------------CEEEEEEecCC------CCEEEEEeeeCCCC----
Confidence 35678999999999999999999865 39999999732 27999999999986
Q ss_pred CEEEEeCccCCccccceecCCCCCCCCcccccchhhhhhhccccCccccccccccccccccccccCCCCCCCCCCCCCCC
Q 005540 281 PVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEGR 360 (691)
Q Consensus 281 pvIv~NT~~~~~WG~eeRc~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g~ 360 (691)
+||+||+.+|.||.|||+ ..|||.+|+
T Consensus 52 -~IV~Ns~~~g~Wg~Eer~----------------------------------------------------~~~pf~~g~ 78 (127)
T cd00070 52 -VIVRNSFLNGNWGPEERS----------------------------------------------------GGFPFQPGQ 78 (127)
T ss_pred -EEEEcCCCCCEecHhhcc----------------------------------------------------CCCCCCCCC
Confidence 999999999999999999 379999999
Q ss_pred eEEEEEEEccceEEEEeCCeEEEEeccccCCCccceeEEEEcccccceee
Q 005540 361 LFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSV 410 (691)
Q Consensus 361 ~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV 410 (691)
+|+|+|.++.++|+|+|||+|+++|+||. ++++|+.|.|.||+.+++|
T Consensus 79 ~F~l~i~~~~~~f~i~vng~~~~~F~~R~--~~~~i~~l~v~Gdv~i~~v 126 (127)
T cd00070 79 PFELTILVEEDKFQIFVNGQHFFSFPHRL--PLESIDYLSINGDVSLTSV 126 (127)
T ss_pred eEEEEEEEcCCEEEEEECCEeEEEecCcC--ChhhEEEEEEeCCEEEEEe
Confidence 99999999999999999999999999999 6799999999999999987
No 9
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.96 E-value=1e-28 Score=231.36 Aligned_cols=132 Identities=37% Similarity=0.575 Sum_probs=119.3
Q ss_pred CceEEeCCCCCCCcEEEEEEEcCCCcccccchhhhccCCCCcceeeeEEEEecCCcCCCCCCCCeeEEEeeeeCC-CCCC
Q 005540 201 DRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKG-DWSH 279 (691)
Q Consensus 201 ~~~~~lPcGL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~-d~~~ 279 (691)
||+..||+||.+|+.|+|.|++...+ ++|.|||++++ ..+.++++|||||||.. .
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~-------------------~~f~inl~~~~--~~~~~~i~lH~~~rf~~~~--- 56 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDA-------------------KRFSINLQTGP--NDPDDDIALHFNPRFDEQN--- 56 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTS-------------------SBEEEEEEES---STTTTEEEEEEEEECTTEE---
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCC-------------------CEEEEEecCCC--cCCCCCEEEEEEEEeCCCc---
Confidence 58899999999999999999999755 38999999864 34667899999999999 5
Q ss_pred CCEEEEeCccCCccccceecCCCCCCCCcccccchhhhhhhccccCccccccccccccccccccccCCCCCCCCCCCCCC
Q 005540 280 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 359 (691)
Q Consensus 280 ~pvIv~NT~~~~~WG~eeRc~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g 359 (691)
+||+||+.+|.||.|||+ ..|||.+|
T Consensus 57 --~iv~Ns~~~g~Wg~Ee~~----------------------------------------------------~~~pf~~g 82 (133)
T PF00337_consen 57 --VIVRNSRINGKWGQEERE----------------------------------------------------SPFPFQPG 82 (133)
T ss_dssp --EEEEEEEETTEE-SEEEE----------------------------------------------------SSTSSTTT
T ss_pred --eEEEeceECCEeccceee----------------------------------------------------eeeeecCC
Confidence 999999999999999996 58999999
Q ss_pred CeEEEEEEEccceEEEEeCCeEEEEeccccCCCccceeEEEEcccccceeeec
Q 005540 360 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYA 412 (691)
Q Consensus 360 ~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV~a 412 (691)
++|+|+|.+..++|+|+|||+|+++|+||. ++++|+.|.|.||++|++|.+
T Consensus 83 ~~F~i~I~~~~~~f~I~vng~~~~~F~~R~--~~~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 83 QPFEIRIRVEEDGFKIYVNGKHFCSFPHRL--PLSSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp SEEEEEEEEESSEEEEEETTEEEEEEE-SS--CGGGEEEEEEEESEEEEEEEE
T ss_pred ceEEEEEEEecCeeEEEECCeEEEEeeCcC--CHHHcCEEEEECCEEEEEEEC
Confidence 999999999999999999999999999998 679999999999999999863
No 10
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.92 E-value=2.5e-24 Score=205.71 Aligned_cols=137 Identities=31% Similarity=0.465 Sum_probs=120.2
Q ss_pred CCceEEeCCCCCCCcEEEEEEEcCCCcccccchhhhccCCCCcceeeeEEEEecCCcCCCCCCCCeeEEEeeeeCCCCCC
Q 005540 200 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 279 (691)
Q Consensus 200 ~~~~~~lPcGL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~ 279 (691)
.++...+++||..|+.+++.|.+..+.+ .+|.++++.+-..+. +++|+|||||||+++
T Consensus 4 ~p~~~~~~~~l~~g~~~~~~g~~~~~~~------------------~~~~~~~~~~~~~~~-~~dia~Hfnprf~~~--- 61 (143)
T KOG3587|consen 4 VPFPVPIPSGLPPGSQVTIKGLVLYGIP------------------KRFAVNLRFGTNLDS-DSDIALHFNPRFDEK--- 61 (143)
T ss_pred cccccccccCcCCCcEEEEEEEEcccCC------------------CcceeeeEeecccCC-CCcEEEEEeccCCCC---
Confidence 3567778999999999999999997643 256666665444444 567999999999998
Q ss_pred CCEEEEeCccCCccccceecCCCCCCCCcccccchhhhhhhccccCccccccccccccccccccccCCCCCCCCCCCCCC
Q 005540 280 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 359 (691)
Q Consensus 280 ~pvIv~NT~~~~~WG~eeRc~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g 359 (691)
.||+||+.+|.||.|||. ..+||+.|
T Consensus 62 --~VVrNs~~~g~Wg~eE~~----------------------------------------------------~~~PF~~g 87 (143)
T KOG3587|consen 62 --GVVRNSLINGEWGLEERE----------------------------------------------------GGNPFQPG 87 (143)
T ss_pred --eEEEecccCCccCchhhc----------------------------------------------------CCCCCCCC
Confidence 699999999999999998 47999999
Q ss_pred CeEEEEEEEccceEEEEeCCeEEEEeccccCCCccceeEEEEcccccceeeeccc
Q 005540 360 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATN 414 (691)
Q Consensus 360 ~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV~a~s 414 (691)
++|.|+|.++.+.|+|.|||.|+++|+||+ +++.+..|.|+||++|+++....
T Consensus 88 ~~F~l~I~~~~~~~~I~VNg~~f~~y~HR~--p~~~v~~l~i~Gdv~i~~i~~~~ 140 (143)
T KOG3587|consen 88 QPFDLTILVEEDKFQIFVNGVHFADYPHRI--PPSSVQTLQINGDVQITSIEFSN 140 (143)
T ss_pred CeEEEEEEEccCeEEEEECCEEEEeecCCC--CChheeEEEEeeeEEEEEEEEEc
Confidence 999999999999999999999999999999 68999999999999999997753
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.71 E-value=2.7e-17 Score=170.95 Aligned_cols=183 Identities=17% Similarity=0.237 Sum_probs=99.1
Q ss_pred EEEEEEeCCCCCHHHH-HHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhhccCcEEEecccccccchhHHHH
Q 005540 445 HLFIGVLSATNHFAER-MAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTI 523 (691)
Q Consensus 445 ~LLI~V~Sap~nf~rR-~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTl 523 (691)
+|+|+|+|++.+...| .+|.+||++... ...|++....+..+ ..+ ...+++..+....+...+++.+
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~------~~~~ifsd~~d~~l----~~~--~~~~l~~~~~~~~~~~~~~~~~ 74 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCN------KQTFIFSDAEDPSL----PTV--TGVHLVNPNCDAGHCRKTLSCK 74 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSG------GGEEEEESS--HHH----HHH--HGGGEEE-------------HH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcC------CceEEecCcccccc----ccc--cccccccCCCcchhhHHHHHHH
Confidence 6889999999887777 999999999886 12454443333333 222 3456666666666666566666
Q ss_pred HHHHHHhh-cCCceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCcccc-ccccccccCCCCCCCCCCCCCC
Q 005540 524 AICEFGVQ-NVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT-GKWAVTYEEWPQEVYPPYANGP 601 (691)
Q Consensus 524 a~l~w~~~-~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~-sKwyVs~eeyp~~~YPpY~~G~ 601 (691)
+..+|... ..+++|++++||||||++++|+++|...++.+++|+|...... |... .+. .....+...|....+|+
T Consensus 75 ~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~-~~~~~~~~--~~~~~~~~~~~f~~GGa 151 (252)
T PF02434_consen 75 MAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDR-PIEIIHRF--NPNKSKDSGFWFATGGA 151 (252)
T ss_dssp HHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-------------------------EE-GGG
T ss_pred HHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCc-cceeeccc--cccccCcCceEeeCCCe
Confidence 66666433 3588999999999999999999999999999999999986432 2211 000 00001122333334789
Q ss_pred eeEeCHHHHHHHHHHhcCCcc-C----CCCCChHHHHHHHHH-cCCC
Q 005540 602 GYVISSDIAKFIVLQHGNQSL-R----LFKMEDVSMGMWVEQ-FNST 642 (691)
Q Consensus 602 GYVLS~Dva~~Iv~~~~~~~l-~----~f~~EDV~iGi~l~~-lgi~ 642 (691)
||+||+.++++|......... . .-..||+.||.|++. +|+.
T Consensus 152 G~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~ 198 (252)
T PF02434_consen 152 GYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVP 198 (252)
T ss_dssp -EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---
T ss_pred eHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcc
Confidence 999999999999653222222 2 223799999999999 8976
No 12
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.1e-14 Score=154.96 Aligned_cols=168 Identities=21% Similarity=0.333 Sum_probs=126.7
Q ss_pred CCcEEEEEEeCCCCCHHHH-HHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhhccCcEEEecccccccchhH
Q 005540 442 RPVHLFIGVLSATNHFAER-MAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVL 520 (691)
Q Consensus 442 ~~v~LLI~V~Sap~nf~rR-~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~NLtl 520 (691)
.+..+++.|+|.+.+...| +++-+||++.+. +..|+--. +-++...+. .|..+..|+|+++-.
T Consensus 89 r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~------~~~f~s~~---------~s~~~~~f~-~v~~~~~~g~~~~~~ 152 (364)
T KOG2246|consen 89 RSGRVLCWVLTSPMRHVTRADAVKETWLKRCD------KGIFFSPT---------LSKDDSRFP-TVYYNLPDGYRSLWR 152 (364)
T ss_pred CCceEEEEEEecCcCceeehhhhhcccccccC------cceecCcc---------CCCCCCcCc-eeeccCCcchHHHHH
Confidence 5678999999999888877 799999999886 23444310 001112232 236788899999999
Q ss_pred HHHHHHHHHhhcC--CceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCccccccccccccCCCCCCCCCCC
Q 005540 521 KTIAICEFGVQNV--TAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYA 598 (691)
Q Consensus 521 KTla~l~w~~~~~--~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~sKwyVs~eeyp~~~YPpY~ 598 (691)
||..+++|...+. +++|++|+|||||+.++||...|.+.++.+++|+|+.....- -++ |. -
T Consensus 153 ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~~--~~~--y~-------------~ 215 (364)
T KOG2246|consen 153 KTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSYF--QNG--YS-------------S 215 (364)
T ss_pred HHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccccc--ccc--cc-------------c
Confidence 9999999998543 899999999999999999999999999999999999643110 001 22 2
Q ss_pred CCCeeEeCHHHHHHHHHHhcC---CccCCC--CCChHHHHHHHHHcCCC
Q 005540 599 NGPGYVISSDIAKFIVLQHGN---QSLRLF--KMEDVSMGMWVEQFNST 642 (691)
Q Consensus 599 ~G~GYVLS~Dva~~Iv~~~~~---~~l~~f--~~EDV~iGi~l~~lgi~ 642 (691)
+|+||++|+.+.+.++..... .+..-. ..||+-||.|++.+||.
T Consensus 216 g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~ 264 (364)
T KOG2246|consen 216 GGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVP 264 (364)
T ss_pred CCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCC
Confidence 789999999999998765211 112222 38999999999999986
No 13
>PLN03153 hypothetical protein; Provisional
Probab=99.00 E-value=3.4e-09 Score=118.62 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=73.9
Q ss_pred cCCceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCccccccccccccCCCCCCCCCCCCCCeeEeCHHHHH
Q 005540 532 NVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPGYVISSDIAK 611 (691)
Q Consensus 532 ~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~sKwyVs~eeyp~~~YPpY~~G~GYVLS~Dva~ 611 (691)
.++++|++++|||||+.+++|++.|...++.++.|+|......... .. + .|-..-+|+||+||+.+++
T Consensus 208 ~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn--~~-------f---~~~fA~GGAG~~LSrPLae 275 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSAN--SY-------F---SHNMAFGGGGIAISYPLAE 275 (537)
T ss_pred CCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccc--cc-------c---ccccccCCceEEEcHHHHH
Confidence 5799999999999999999999999999999999999875422110 00 0 0112238999999999999
Q ss_pred HHHHHhcCCccC---CCCCChHHHHHHHHHcCCC
Q 005540 612 FIVLQHGNQSLR---LFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 612 ~Iv~~~~~~~l~---~f~~EDV~iGi~l~~lgi~ 642 (691)
.|..... .+.. ...-+|..+|.|+.++|+.
T Consensus 276 ~L~~~~d-~C~~rY~~~~~gD~rL~~CL~elGV~ 308 (537)
T PLN03153 276 ALSRILD-DCLDRYPKLYGSDDRLHACITELGVP 308 (537)
T ss_pred HHHHHhh-hhhhhcccCCCcHHHHHHHHHHcCCC
Confidence 9887532 2222 2346899999999999965
No 14
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00039 Score=77.83 Aligned_cols=195 Identities=18% Similarity=0.215 Sum_probs=123.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhhccCcEEEecccccccchhHHHH-
Q 005540 445 HLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTI- 523 (691)
Q Consensus 445 ~LLI~V~Sap~nf~rR~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTl- 523 (691)
.|+++|+|. ..---+|.+|-+.+-. ++.||.+...-. .|.-+++.+-.|+.-..|+.
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvp------rv~~F~~~~~i~-------------~~~a~~~~vs~~d~r~~~~~s 84 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVP------RVHLFADSSRID-------------NDLAQLTNVSPYDLRGQKTHS 84 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcc------eeEEeecccccc-------------ccHhhccccCccccCccccHH
Confidence 566778772 2555677878776654 567787744211 22333444444554445554
Q ss_pred HHHHHHhhcC--CceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCccccccccccccCCCCCCCCCCCCCC
Q 005540 524 AICEFGVQNV--TAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGP 601 (691)
Q Consensus 524 a~l~w~~~~~--~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~sKwyVs~eeyp~~~YPpY~~G~ 601 (691)
+.+++...+. +++|++-+-||||||...|++++...+-+.++|+|.-..+ ... .+-.+.
T Consensus 85 ~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~----------------gs~---rC~l~~ 145 (681)
T KOG3708|consen 85 MVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAED----------------GSG---RCRLDT 145 (681)
T ss_pred HHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhC----------------ccC---cccccc
Confidence 4566666544 8999999999999999999999999988899999942210 011 133678
Q ss_pred eeEeCHHHHHHHHHHhcCCccCCC--CCChHHHHHHHHHc-CCCC-Cc-----ccccCC---c----cccC-C--cCCce
Q 005540 602 GYVISSDIAKFIVLQHGNQSLRLF--KMEDVSMGMWVEQF-NSTM-TV-----RYSHSW---K----FCQY-G--CMEGY 662 (691)
Q Consensus 602 GYVLS~Dva~~Iv~~~~~~~l~~f--~~EDV~iGi~l~~l-gi~~-pV-----~y~h~~---~----fc~~-~--C~~~~ 662 (691)
||+||+.++.+|..+ ...+.+.+ .=.|+.+|.|+... |+.. |. +|.+-. . +-.. + -..+.
T Consensus 146 G~LLS~s~l~~lrnn-le~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~e~~~s~aFr~A 224 (681)
T KOG3708|consen 146 GMLLSQSLLHALRNN-LEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIPEWEGSPAFRSA 224 (681)
T ss_pred ceeecHHHHHHHHhh-HHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccchhhcCChHHhhh
Confidence 999999999999875 23333322 34789999999854 4441 21 121100 0 1000 0 11456
Q ss_pred EEEe-cCCHHHHHHHHHHhh
Q 005540 663 YTAH-YQSPRQMICLWDKLS 681 (691)
Q Consensus 663 it~H-~~sP~~M~~lW~~L~ 681 (691)
+++| -++|.+|..+.+.+.
T Consensus 225 ~tv~pv~~p~d~yrLH~yfs 244 (681)
T KOG3708|consen 225 LTVHPVLSPADMYRLHKYFS 244 (681)
T ss_pred hccCccCCHHHHHHHHHHHH
Confidence 8888 579999999887654
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.34 E-value=0.3 Score=48.57 Aligned_cols=184 Identities=12% Similarity=0.094 Sum_probs=88.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhhccCcE--EEecccccccchhHHHH
Q 005540 446 LFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDI--VILPFMDRYELVVLKTI 523 (691)
Q Consensus 446 LLI~V~Sap~nf~rR~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae~ygDI--I~~df~DsY~NLtlKTl 523 (691)
+.|+|.+.-..-.-++.|+.--.+.. .++.++++.. ..+.+..+.+++-.+.|..+ ..+.-..+. ..+.|.-
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~----~~~~v~vvd~-~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~-g~~~k~~ 76 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDY----PRLEVVVVDD-GSDDETAEILRALAARYPRVRVRVIRRPRNP-GPGGKAR 76 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHH----HTEEEEEEEE--SSS-GCTTHHHHHHTTGG-GEEEEE----H-HHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCC----CCeEEEEEEC-CCChHHHHHHHHHHHHcCCCceEEeecCCCC-CcchHHH
Confidence 45556554444455666665554422 2344444443 33333334455444555543 333221111 1112333
Q ss_pred HHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhc-CCCCceEEEeeccCCCc--cc-cc-----cccccccCCCCCCC
Q 005540 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI-FPKRSLYMGNLNLLHRP--LR-TG-----KWAVTYEEWPQEVY 594 (691)
Q Consensus 524 a~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~-~~~~~lY~G~v~~~~~P--iR-~s-----KwyVs~eeyp~~~Y 594 (691)
.+.++.+....+|++.+|||+.+..+.|...+... .+.-.+..|.+...... .. -. .|+....... ..+
T Consensus 77 -a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (228)
T PF13641_consen 77 -ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGR-RAL 154 (228)
T ss_dssp -HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT--B--
T ss_pred -HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhh-ccc
Confidence 44667776789999999999999999888877776 34444555555432211 00 01 1111111111 112
Q ss_pred C-CCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 595 P-PYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 595 P-pY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
. .++.|++.++.+++++.+-.- .. ....||..++..+.+.|..
T Consensus 155 ~~~~~~G~~~~~rr~~~~~~g~f--d~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 155 GVAFLSGSGMLFRRSALEEVGGF--DP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp --S-B--TEEEEEHHHHHHH-S----S---SSSSHHHHHHHHHHHTT--
T ss_pred ceeeccCcEEEEEHHHHHHhCCC--CC---CCcccHHHHHHHHHHCCCc
Confidence 2 446899999999999998532 11 4455999999999998865
No 16
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=93.95 E-value=0.93 Score=44.99 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=51.6
Q ss_pred EEEeCCCCCHHHHHHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhhccCcEEEe-----cccccccchhHHH
Q 005540 448 IGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVIL-----PFMDRYELVVLKT 522 (691)
Q Consensus 448 I~V~Sap~nf~rR~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~-----df~DsY~NLtlKT 522 (691)
|.|.|-++..+||+.+.+..... ++.+.||=|...+.-...++..+ |..-... +..-.----.+-.
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~------~~~~e~~~Avdg~~l~~~~~~~~---~~~~~~~~~~~~~lt~gEiGC~lSH 74 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL------GINFEFFDAVDGRDLSEDELFRR---YDPELFKKRYGRPLTPGEIGCALSH 74 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCceEEEEeecccccchHHHHHH---hhhhhhhccccccCCcceEeehhhH
Confidence 56788899999999998766543 34567777655432211111111 1100000 0000000112445
Q ss_pred HHHHHHHhhcCCceEEEEecCcccccHH
Q 005540 523 IAICEFGVQNVTAAYIMKCDDDTFIRVD 550 (691)
Q Consensus 523 la~l~w~~~~~~akfvmKvDDDtfVnvd 550 (691)
+.+++-+++ -+.+|++-..||+.++.+
T Consensus 75 ~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 75 IKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred HHHHHHHHH-cCCCeEEEEecccccccc
Confidence 566665554 267999999999999866
No 17
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=93.94 E-value=1.7 Score=47.83 Aligned_cols=185 Identities=13% Similarity=0.037 Sum_probs=97.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhhccCc--EEEecccccccchhHHHH
Q 005540 446 LFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGD--IVILPFMDRYELVVLKTI 523 (691)
Q Consensus 446 LLI~V~Sap~nf~rR~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae~ygD--II~~df~DsY~NLtlKTl 523 (691)
+-|+|.+.-....-.+.|+.-=.|. ..++.++|+...+++... +.+++=.+.|.+ |..+.-.+. .....|.-
T Consensus 43 VSViiP~~nee~~l~~~L~Sl~~q~----Yp~~EIivvdd~s~D~t~-~iv~~~~~~~p~~~i~~v~~~~~-~G~~~K~~ 116 (373)
T TIGR03472 43 VSVLKPLHGDEPELYENLASFCRQD----YPGFQMLFGVQDPDDPAL-AVVRRLRADFPDADIDLVIDARR-HGPNRKVS 116 (373)
T ss_pred eEEEEECCCCChhHHHHHHHHHhcC----CCCeEEEEEeCCCCCcHH-HHHHHHHHhCCCCceEEEECCCC-CCCChHHH
Confidence 4444554333333345554222222 123566665554444332 333333345555 433311111 12224654
Q ss_pred HHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCC-CCceEEEeeccCCCcccc--c---cccccccCCCC------
Q 005540 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP-KRSLYMGNLNLLHRPLRT--G---KWAVTYEEWPQ------ 591 (691)
Q Consensus 524 a~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~-~~~lY~G~v~~~~~PiR~--s---KwyVs~eeyp~------ 591 (691)
+..+ +.+..+.+|++.+|+|+.+..+.|...+..... .-.+..|... ..+..+ . ...+....+|.
T Consensus 117 ~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 193 (373)
T TIGR03472 117 NLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYR--GRPVPGFWSRLGAMGINHNFLPSVMVARA 193 (373)
T ss_pred HHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEecccc--CCCCCCHHHHHHHHHhhhhhhHHHHHHHh
Confidence 4443 456678999999999999999998888777642 2233333211 111111 0 01111111110
Q ss_pred CCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 592 EVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 592 ~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
..-+.+|.|.++++.+++.+.+--- ......-.||+.+|.-+.+.|.+
T Consensus 194 ~~~~~~~~G~~~a~RR~~l~~iGGf---~~~~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 194 LGRARFCFGATMALRRATLEAIGGL---AALAHHLADDYWLGELVRALGLR 241 (373)
T ss_pred ccCCccccChhhheeHHHHHHcCCh---HHhcccchHHHHHHHHHHHcCCe
Confidence 0113468899999999999998532 11122335999999999999865
No 18
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=93.77 E-value=2.7 Score=41.28 Aligned_cols=132 Identities=15% Similarity=0.093 Sum_probs=79.1
Q ss_pred EEEEEEEeeCCChhhHHHHHHhhhccC--cEEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHH
Q 005540 478 VVARFFVALNPRKEVNAVLKKEAAFFG--DIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKE 555 (691)
Q Consensus 478 v~vrFfVG~~~~~~~~~~L~~Eae~yg--DII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~ 555 (691)
+.++++...+.+.. .+.+++-.+.|. ++.+.....+. ....|.- .+..+.+....+|++.+|+|+.+..+.|...
T Consensus 31 ~eiivVdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l 107 (196)
T cd02520 31 YEILFCVQDEDDPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLRRM 107 (196)
T ss_pred eEEEEEeCCCcchH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHHHH
Confidence 55666655554433 234444444454 33222211111 1113433 2455666778999999999999988888777
Q ss_pred HHhcC-CCCceEEEeeccCCCccccccccccccCCCCCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHH
Q 005540 556 IEGIF-PKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGM 634 (691)
Q Consensus 556 L~~~~-~~~~lY~G~v~~~~~PiR~sKwyVs~eeyp~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi 634 (691)
+.... +.-.+..|. ++.|++.++.+++.+.+-.- .....+..||..+++
T Consensus 108 ~~~~~~~~~~~v~~~---------------------------~~~g~~~~~r~~~~~~~ggf---~~~~~~~~eD~~l~~ 157 (196)
T cd02520 108 VAPLMDPGVGLVTCL---------------------------CAFGKSMALRREVLDAIGGF---EAFADYLAEDYFLGK 157 (196)
T ss_pred HHHhhCCCCCeEEee---------------------------cccCceeeeEHHHHHhccCh---HHHhHHHHHHHHHHH
Confidence 76642 222222221 57899999999999987431 111223369999999
Q ss_pred HHHHcCCC
Q 005540 635 WVEQFNST 642 (691)
Q Consensus 635 ~l~~lgi~ 642 (691)
-+.+.|.+
T Consensus 158 rl~~~G~~ 165 (196)
T cd02520 158 LIWRLGYR 165 (196)
T ss_pred HHHHcCCe
Confidence 99888854
No 19
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.39 E-value=5.6 Score=39.03 Aligned_cols=132 Identities=11% Similarity=-0.010 Sum_probs=75.6
Q ss_pred cCcEEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcC-CCCceEEEeeccCCCcc--c-
Q 005540 503 FGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNLNLLHRPL--R- 578 (691)
Q Consensus 503 ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~-~~~~lY~G~v~~~~~Pi--R- 578 (691)
+..+..++.... .+. -|. ..+.++.+.+..+|++.+|+|..+..+.|...+.... .....+.|..... .+. .
T Consensus 54 ~~~v~~~~~~~~-~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~~~~~~~ 129 (229)
T cd04192 54 NFQLKILNNSRV-SIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYF-KGKSLLA 129 (229)
T ss_pred CcceEEeeccCc-ccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeec-CCccHHH
Confidence 344555554431 222 233 3356666777899999999999999888877776443 3334555654432 110 0
Q ss_pred ---cccccccc---cCCCCCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCC
Q 005540 579 ---TGKWAVTY---EEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNS 641 (691)
Q Consensus 579 ---~sKwyVs~---eeyp~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi 641 (691)
.-.+.... .......++..+.|+++++++++.+.+--- ........||..++.-+..-+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf---~~~~~~~~eD~~~~~~~~~~g~ 195 (229)
T cd04192 130 KFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGF---EGNDHIASGDDELLLAKVASKY 195 (229)
T ss_pred HHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCC---ccccccccCCHHHHHHHHHhCC
Confidence 00010000 011233456677899999999999998431 1122345688887766655554
No 20
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=91.65 E-value=13 Score=35.80 Aligned_cols=113 Identities=12% Similarity=0.180 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhc--CCCCceEEEeeccCCC-ccccccccccccCCCCCC-CCCCCC
Q 005540 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI--FPKRSLYMGNLNLLHR-PLRTGKWAVTYEEWPQEV-YPPYAN 599 (691)
Q Consensus 524 a~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~--~~~~~lY~G~v~~~~~-PiR~sKwyVs~eeyp~~~-YPpY~~ 599 (691)
.++.++.+....+|++..|+|..+..+.|...++.. .+...++++....... ......++.+ .|.... +..-+.
T Consensus 73 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 150 (202)
T cd04184 73 AATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKP--DWSPDLLLSQNYI 150 (202)
T ss_pred HHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCC--CCCHHHhhhcCCc
Confidence 345566666678999999999999998888888765 2333444444322110 0000111111 111111 111224
Q ss_pred CCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 600 GPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 600 G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
|.+-++++++++.+-. ....+...||.-+++-+.+.|.+
T Consensus 151 ~~~~~~~r~~~~~igg----f~~~~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 151 GHLLVYRRSLVRQVGG----FREGFEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred cceEeEEHHHHHHhCC----CCcCcccchhHHHHHHHHhccce
Confidence 5566789999888742 11123456999999888887755
No 21
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=91.41 E-value=5.6 Score=44.90 Aligned_cols=153 Identities=15% Similarity=0.125 Sum_probs=85.1
Q ss_pred cEEEEEEEeeCCChhhHHHHHHhhhccCcEEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHH
Q 005540 477 NVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEI 556 (691)
Q Consensus 477 ~v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L 556 (691)
+..++ ++....+..+.+.+++..+++..+....... |.. |. ..++.+....+.+|++..|.|+.+..+.|...+
T Consensus 104 ~~eIi-vVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv 177 (444)
T PRK14583 104 NIEVI-AINDGSSDDTAQVLDALLAEDPRLRVIHLAH---NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLV 177 (444)
T ss_pred CeEEE-EEECCCCccHHHHHHHHHHhCCCEEEEEeCC---CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHH
Confidence 34433 3333333334455555556666665544322 222 43 456677777789999999999999999988887
Q ss_pred Hhc--CCCCceEEEeeccCCCccccccccccccCCC---------CCC--CCCCCCCCeeEeCHHHHHHHHHHhcCCccC
Q 005540 557 EGI--FPKRSLYMGNLNLLHRPLRTGKWAVTYEEWP---------QEV--YPPYANGPGYVISSDIAKFIVLQHGNQSLR 623 (691)
Q Consensus 557 ~~~--~~~~~lY~G~v~~~~~PiR~sKwyVs~eeyp---------~~~--YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~ 623 (691)
+.. +++-....|+.....+..--++.... +|. ... -+..++|.+.++.+++++.+--. ..
T Consensus 178 ~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~--e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~--~~--- 250 (444)
T PRK14583 178 APLIANPRTGAVTGNPRIRTRSTLIGRVQVG--EFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYW--SP--- 250 (444)
T ss_pred HHHHhCCCeEEEEccceecCCCcchhhHHHH--HHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCC--CC---
Confidence 654 23223333332211100000111100 010 001 12345788999999999887421 11
Q ss_pred CCCCChHHHHHHHHHcCCC
Q 005540 624 LFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 624 ~f~~EDV~iGi~l~~lgi~ 642 (691)
-.-.||..++.-+...|.+
T Consensus 251 ~~i~ED~dl~~rl~~~G~~ 269 (444)
T PRK14583 251 DMITEDIDISWKLQLKHWS 269 (444)
T ss_pred CcccccHHHHHHHHHcCCe
Confidence 1236999999999988865
No 22
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.17 E-value=7.3 Score=35.85 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=57.5
Q ss_pred HhhcCCceEEEEecCcccccHHHHHHHHHhcCCC-CceEEEeeccCCCccccccccccccCCCCCCCCCCCCCCeeEeCH
Q 005540 529 GVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPK-RSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPGYVISS 607 (691)
Q Consensus 529 ~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~-~~lY~G~v~~~~~PiR~sKwyVs~eeyp~~~YPpY~~G~GYVLS~ 607 (691)
+.+..+.+|++.+|||.++..+.+...++..... .-..++.. +.|++.++++
T Consensus 69 ~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~ 121 (166)
T cd04186 69 GIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------------------VSGAFLLVRR 121 (166)
T ss_pred HHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------------------CceeeEeeeH
Confidence 3444589999999999999998888877753322 22222221 6899999999
Q ss_pred HHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 608 DIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 608 Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
++++.+-.- .... ....||..+.+-+...|.+
T Consensus 122 ~~~~~~~~~--~~~~-~~~~eD~~~~~~~~~~g~~ 153 (166)
T cd04186 122 EVFEEVGGF--DEDF-FLYYEDVDLCLRARLAGYR 153 (166)
T ss_pred HHHHHcCCC--Chhh-hccccHHHHHHHHHHcCCe
Confidence 999986421 1111 1266999998888877754
No 23
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=90.85 E-value=18 Score=35.88 Aligned_cols=155 Identities=10% Similarity=0.056 Sum_probs=81.7
Q ss_pred cEEEEEEEeeCCChhhHHHHHHhhhccCcEEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHH
Q 005540 477 NVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEI 556 (691)
Q Consensus 477 ~v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L 556 (691)
++.++++-..+.+ +....++...+.+..+....-... . +. .++..+.+..+.+|++.+|+|..+..+.|...+
T Consensus 31 ~~evivvd~~s~d-~~~~~~~~~~~~~~~v~~i~~~~~----~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 31 LIEIIVVDGGSTD-GTREIVQEYAAKDPRIRLIDNPKR----I-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred ccEEEEEeCCCCc-cHHHHHHHHHhcCCeEEEEeCCCC----C-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHHHHH
Confidence 3444444433333 334444444444444544432211 1 11 356667666789999999999999988887777
Q ss_pred HhcCC-CCceEEEeeccC-CCcccc-------ccccccccCC--CCCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCC
Q 005540 557 EGIFP-KRSLYMGNLNLL-HRPLRT-------GKWAVTYEEW--PQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLF 625 (691)
Q Consensus 557 ~~~~~-~~~lY~G~v~~~-~~PiR~-------sKwyVs~eey--p~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f 625 (691)
..... ...+..|..... ..+... ..+......+ .....-.++.|++.++++++.+.+.- ....+.
T Consensus 104 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~ 179 (249)
T cd02525 104 EALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGG----FDESLV 179 (249)
T ss_pred HHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCC----CCcccC
Confidence 55432 223444443221 111100 0000000000 01100125578888999999888742 111234
Q ss_pred CCChHHHHHHHHHcCCC
Q 005540 626 KMEDVSMGMWVEQFNST 642 (691)
Q Consensus 626 ~~EDV~iGi~l~~lgi~ 642 (691)
..||..++.-+.+.|..
T Consensus 180 ~~eD~~l~~r~~~~G~~ 196 (249)
T cd02525 180 RNEDAELNYRLRKAGYK 196 (249)
T ss_pred ccchhHHHHHHHHcCcE
Confidence 56999999888888855
No 24
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.76 E-value=5.1 Score=38.90 Aligned_cols=170 Identities=12% Similarity=0.083 Sum_probs=87.4
Q ss_pred HHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhhccC-cEEEecccccccchhHHHHHHHHHHhhcCCceEEE
Q 005540 461 MAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFG-DIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIM 539 (691)
Q Consensus 461 ~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae~yg-DII~~df~DsY~NLtlKTla~l~w~~~~~~akfvm 539 (691)
..|.+++-+-.......+.++++-..+++. +.+.+++-...|. .+.......+.- + ...+..+......+|++
T Consensus 11 ~~l~~~l~sl~~q~~~~~eiiVvddgS~d~-t~~~~~~~~~~~~~~~~~~~~~~~~G----~-~~~~n~g~~~~~g~~v~ 84 (214)
T cd04196 11 KYLREQLDSILAQTYKNDELIISDDGSTDG-TVEIIKEYIDKDPFIIILIRNGKNLG----V-ARNFESLLQAADGDYVF 84 (214)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCCC-cHHHHHHHHhcCCceEEEEeCCCCcc----H-HHHHHHHHHhCCCCEEE
Confidence 344444443322112244555554434333 3333444444453 333333332221 1 22333445667899999
Q ss_pred EecCcccccHHHHHHHHHh-cC-CCCceEEEeecc---CCCcccccccccc----ccCCCCCCCCCCCCCCeeEeCHHHH
Q 005540 540 KCDDDTFIRVDAVLKEIEG-IF-PKRSLYMGNLNL---LHRPLRTGKWAVT----YEEWPQEVYPPYANGPGYVISSDIA 610 (691)
Q Consensus 540 KvDDDtfVnvd~Ll~~L~~-~~-~~~~lY~G~v~~---~~~PiR~sKwyVs----~eeyp~~~YPpY~~G~GYVLS~Dva 610 (691)
..|+|..+.++.|...+.. .. +...++.|.... .........+... ...+.......++.|+++++.++++
T Consensus 85 ~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 164 (214)
T cd04196 85 FCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELL 164 (214)
T ss_pred EECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCceeeEEHHHH
Confidence 9999999998888888876 22 333444554322 1111111111000 0011111233566899999999999
Q ss_pred HHHHHHhcCCccCCCCCChHHHHHHHHHcC
Q 005540 611 KFIVLQHGNQSLRLFKMEDVSMGMWVEQFN 640 (691)
Q Consensus 611 ~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lg 640 (691)
+.+..- .. .....||.++...+...+
T Consensus 165 ~~~~~~--~~--~~~~~~D~~~~~~~~~~~ 190 (214)
T cd04196 165 ELALPF--PD--ADVIMHDWWLALLASAFG 190 (214)
T ss_pred Hhhccc--cc--cccccchHHHHHHHHHcC
Confidence 998542 11 115679998887777654
No 25
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.66 E-value=13 Score=41.27 Aligned_cols=148 Identities=15% Similarity=0.152 Sum_probs=83.4
Q ss_pred EEeeCCChhhHHHHHHhhhccCcEEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcC--
Q 005540 483 FVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-- 560 (691)
Q Consensus 483 fVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~-- 560 (691)
++....+.+..+.+++..+.|..+..+...+ |.. |. ..++.+.+..+.+|++..|+|+.+..+.|.+.++...
T Consensus 88 VvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~---n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 88 AINDGSSDNTGEILDRLAAQIPRLRVIHLAE---NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred EEECCCCccHHHHHHHHHHhCCcEEEEEcCC---CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 3433333344455555556666666554332 332 43 3456666777899999999999999998888887652
Q ss_pred CCCceEEEeeccCCCccccccccccccCCC---------CC--CCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCCh
Q 005540 561 PKRSLYMGNLNLLHRPLRTGKWAVTYEEWP---------QE--VYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMED 629 (691)
Q Consensus 561 ~~~~lY~G~v~~~~~PiR~sKwyVs~eeyp---------~~--~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~ED 629 (691)
+.-....|.......-..-++... .+|. .. ..+..++|++.++.+++++.+--- . ...-.||
T Consensus 163 ~~v~~v~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~--~---~~~~~ED 235 (420)
T PRK11204 163 PRVGAVTGNPRIRNRSTLLGRIQV--GEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYW--S---TDMITED 235 (420)
T ss_pred CCeEEEECCceeccchhHHHHHHH--HHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCC--C---CCcccch
Confidence 322233333211100000001000 0010 00 112345789999999999887321 1 1134699
Q ss_pred HHHHHHHHHcCCC
Q 005540 630 VSMGMWVEQFNST 642 (691)
Q Consensus 630 V~iGi~l~~lgi~ 642 (691)
+.++.-+.+.|.+
T Consensus 236 ~~l~~rl~~~G~~ 248 (420)
T PRK11204 236 IDISWKLQLRGWD 248 (420)
T ss_pred HHHHHHHHHcCCe
Confidence 9999999988865
No 26
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=90.59 E-value=5.3 Score=39.93 Aligned_cols=137 Identities=11% Similarity=0.016 Sum_probs=76.7
Q ss_pred HHHHHHhhcC--CceEEEEecCcccccHHHHHHHHHhcCCCC-ceEEEeeccC---CCcccc-ccc-----cccccCCCC
Q 005540 524 AICEFGVQNV--TAAYIMKCDDDTFIRVDAVLKEIEGIFPKR-SLYMGNLNLL---HRPLRT-GKW-----AVTYEEWPQ 591 (691)
Q Consensus 524 a~l~w~~~~~--~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~-~lY~G~v~~~---~~PiR~-sKw-----yVs~eeyp~ 591 (691)
..+.++.+.. +.+|++.+|+|+.+..+.|...+....... .+..|..... ..+... ..| +.+......
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRN 151 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcccc
Confidence 3466666644 479999999999999999988887654222 2222221110 001100 011 000000000
Q ss_pred CCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCCCCcccccCCccccCCcCCceEEEecCCHH
Q 005540 592 EVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKFCQYGCMEGYYTAHYQSPR 671 (691)
Q Consensus 592 ~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~~pV~y~h~~~fc~~~C~~~~it~H~~sP~ 671 (691)
..--.++.|++.++++++.+.+--- .. .+..||+-++.-+.+.|.. +.+.+. ...|.+.|.
T Consensus 152 ~~~~~~~~g~~~~~rr~~~~~iGgf--~~---~~~~eD~dl~~r~~~~G~~--~~~~~~------------~~~~~~~~~ 212 (236)
T cd06435 152 ERNAIIQHGTMCLIRRSALDDVGGW--DE---WCITEDSELGLRMHEAGYI--GVYVAQ------------SYGHGLIPD 212 (236)
T ss_pred ccCceEEecceEEEEHHHHHHhCCC--CC---ccccchHHHHHHHHHCCcE--EEEcch------------hhccCcCcc
Confidence 0001356899999999999997431 11 1347999999999888865 333221 223456677
Q ss_pred HHHHHHHH
Q 005540 672 QMICLWDK 679 (691)
Q Consensus 672 ~M~~lW~~ 679 (691)
.+..+++.
T Consensus 213 ~~~~~~~q 220 (236)
T cd06435 213 TFEAFKKQ 220 (236)
T ss_pred cHHHHHHH
Confidence 76666654
No 27
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=90.20 E-value=14 Score=37.18 Aligned_cols=181 Identities=12% Similarity=0.048 Sum_probs=90.7
Q ss_pred cEEEEEEeCCCCCHHHHHHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhhccCcEEEecccccccchhHHHH
Q 005540 444 VHLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTI 523 (691)
Q Consensus 444 v~LLI~V~Sap~nf~rR~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTl 523 (691)
..+-|+|.+--....-...|+.-..+... ...+.++++...+.+ .....+.+..+. .+.++.-.++ .. |.
T Consensus 29 ~~isVvip~~n~~~~l~~~l~si~~q~~~--~~~~eiivvdd~s~d-~t~~~~~~~~~~--~v~~i~~~~~---~g-~~- 98 (251)
T cd06439 29 PTVTIIIPAYNEEAVIEAKLENLLALDYP--RDRLEIIVVSDGSTD-GTAEIAREYADK--GVKLLRFPER---RG-KA- 98 (251)
T ss_pred CEEEEEEecCCcHHHHHHHHHHHHhCcCC--CCcEEEEEEECCCCc-cHHHHHHHHhhC--cEEEEEcCCC---CC-hH-
Confidence 34555555544433345666665554322 112344444332333 222333322222 3444332222 21 33
Q ss_pred HHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCC-CCceEEEeeccCCCc--ccccccccccc----CCC-CCCCC
Q 005540 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP-KRSLYMGNLNLLHRP--LRTGKWAVTYE----EWP-QEVYP 595 (691)
Q Consensus 524 a~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~-~~~lY~G~v~~~~~P--iR~sKwyVs~e----eyp-~~~YP 595 (691)
..+..+.+....+|++.+|+|+++..+.|.+.+..... .-.+..|........ .+....+.... .+. ....+
T Consensus 99 ~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (251)
T cd06439 99 AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGST 178 (251)
T ss_pred HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCe
Confidence 34455556667799999999999998777777776642 234555555432211 01111000000 000 11224
Q ss_pred CCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 596 PYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 596 pY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
..+.|+++.+.+++.+.+ . .....||..++.-+.+.|..
T Consensus 179 ~~~~g~~~~~rr~~~~~~-----~---~~~~~eD~~l~~~~~~~G~~ 217 (251)
T cd06439 179 VGANGAIYAIRRELFRPL-----P---ADTINDDFVLPLRIARQGYR 217 (251)
T ss_pred eeecchHHHhHHHHhcCC-----C---cccchhHHHHHHHHHHcCCe
Confidence 456788887887776611 1 12336999999999888854
No 28
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=89.51 E-value=0.49 Score=46.88 Aligned_cols=118 Identities=14% Similarity=0.044 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCC-CCceEEEeeccCCCcccc-----cccccc--ccCCCC
Q 005540 520 LKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP-KRSLYMGNLNLLHRPLRT-----GKWAVT--YEEWPQ 591 (691)
Q Consensus 520 lKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~-~~~lY~G~v~~~~~PiR~-----sKwyVs--~eeyp~ 591 (691)
.|.-.+..-.....+.++++..|+|+.|+.+.|.+.+..+.. .-.+..|. .. ..|.++ ..-++. ...+.-
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~-~~-~~~~~~~~~~l~~~~~~~~~~~~~a 94 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGL-PR-GVPARGFWSRLEAAFFNFLPGVLQA 94 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEec-cc-ccCCcCHHHHHHHHHHhHHHHHHHH
Confidence 455554443222378999999999999999999888877643 33333232 11 222222 111110 000001
Q ss_pred CCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 592 EVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 592 ~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
-.-.+++.|+.+++.+++++.+-- -..+.-.--||.++|..+.+.|.+
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~GG---~~~l~~~ladD~~l~~~~~~~G~~ 142 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEIGG---FEALADYLADDYALGRRLRARGYR 142 (175)
T ss_pred hcCCCceecceeeeEHHHHHHccc---HHHHhhhhhHHHHHHHHHHHCCCe
Confidence 124688999999999999998732 112233557999999999999976
No 29
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=89.47 E-value=3.3 Score=39.66 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=73.4
Q ss_pred EEEEEEEeeCCChhhHHHHHHhhhccCcEEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHH
Q 005540 478 VVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIE 557 (691)
Q Consensus 478 v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~ 557 (691)
+.++.+-..+++. ....++...+++..+..+....++- |. .+++.+.++...+|++.+|+|.....+.|...++
T Consensus 30 ~eiivvdd~s~d~-t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 30 YEIIFVDDGSTDR-TLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred eEEEEEeCCCCcc-HHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 3444443333333 2233444444555565555433321 22 3445555566789999999999999888887777
Q ss_pred hcCCCCceEEEeeccCCCcc-cc--ccccccccCCCCCCCCCCCCCCeeEeCHHHHHHHHH
Q 005540 558 GIFPKRSLYMGNLNLLHRPL-RT--GKWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVL 615 (691)
Q Consensus 558 ~~~~~~~lY~G~v~~~~~Pi-R~--sKwyVs~eeyp~~~YPpY~~G~GYVLS~Dva~~Iv~ 615 (691)
.......+.+|.......+. +. ++.+...........-+...|+.+++++.+++.+..
T Consensus 104 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 104 KWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 65555566667654332211 10 111111011111223356678889999999999875
No 30
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=88.97 E-value=1.5 Score=43.55 Aligned_cols=112 Identities=11% Similarity=0.019 Sum_probs=67.6
Q ss_pred HHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCCC--ceEEEeecc-CCCc----ccc----ccccccccCCC-CCC
Q 005540 526 CEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKR--SLYMGNLNL-LHRP----LRT----GKWAVTYEEWP-QEV 593 (691)
Q Consensus 526 l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~--~lY~G~v~~-~~~P----iR~----sKwyVs~eeyp-~~~ 593 (691)
+..+.+..+.+|++.+|+|+++..+.|...+....... .+..|.... .... .+. ...+....... ...
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRW 155 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555556899999999999999998888887664322 223332211 1111 110 01111110001 112
Q ss_pred CCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 594 YPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 594 YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
...++.|++.++++++.+.+-.- . .....||..++.-+.+.|..
T Consensus 156 ~~~~~~g~~~~~r~~~~~~ig~~--~---~~~~~eD~~l~~r~~~~g~~ 199 (234)
T cd06421 156 GAAFCCGSGAVVRREALDEIGGF--P---TDSVTEDLATSLRLHAKGWR 199 (234)
T ss_pred CCceecCceeeEeHHHHHHhCCC--C---ccceeccHHHHHHHHHcCce
Confidence 24567899999999999987431 1 12347999999999988865
No 31
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=88.92 E-value=4.5 Score=40.25 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=74.5
Q ss_pred HhhhccCcEEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcC-CCCceEEEeeccCC--
Q 005540 498 KEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNLNLLH-- 574 (691)
Q Consensus 498 ~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~-~~~~lY~G~v~~~~-- 574 (691)
++...+..+.+.. .++ .-|.- .+..+.+....+|++.+|+|+.+..+.|.+.++... +.-.+..|......
T Consensus 47 ~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~ 120 (235)
T cd06434 47 SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPR 120 (235)
T ss_pred HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCc
Confidence 3455566666653 221 12443 334455566899999999999999999888887764 22223333222111
Q ss_pred -Ccccc-ccccccc---cCCCC-CC--CCCCCCCCeeEeCHHHHHHHHHHhc-----CCccCCCCCChHHHHHHHHHcCC
Q 005540 575 -RPLRT-GKWAVTY---EEWPQ-EV--YPPYANGPGYVISSDIAKFIVLQHG-----NQSLRLFKMEDVSMGMWVEQFNS 641 (691)
Q Consensus 575 -~PiR~-sKwyVs~---eeyp~-~~--YPpY~~G~GYVLS~Dva~~Iv~~~~-----~~~l~~f~~EDV~iGi~l~~lgi 641 (691)
.+... ...+... ..++. .. --+++.|++.++.+++++.+.-... ....+....||..++.-+.+.|.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~ 200 (235)
T cd06434 121 DSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGY 200 (235)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCC
Confidence 11100 0000000 00000 00 1134577788888888876542210 11123456699999988888886
Q ss_pred C
Q 005540 642 T 642 (691)
Q Consensus 642 ~ 642 (691)
.
T Consensus 201 ~ 201 (235)
T cd06434 201 K 201 (235)
T ss_pred e
Confidence 5
No 32
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=88.85 E-value=4 Score=45.16 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=61.4
Q ss_pred CceEEEEecCcccccHHHHHHHHHhcCCC-CceEEEeeccCCCcccccccccc------ccCCC----C--CCCCCCCCC
Q 005540 534 TAAYIMKCDDDTFIRVDAVLKEIEGIFPK-RSLYMGNLNLLHRPLRTGKWAVT------YEEWP----Q--EVYPPYANG 600 (691)
Q Consensus 534 ~akfvmKvDDDtfVnvd~Ll~~L~~~~~~-~~lY~G~v~~~~~PiR~sKwyVs------~eeyp----~--~~YPpY~~G 600 (691)
+.+|++.+|+|+.+..+.|.+.+...... ..+..|......... ..+..++ ...|| . .....++.|
T Consensus 133 ~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 211 (384)
T TIGR03469 133 PADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESF-WEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAG 211 (384)
T ss_pred CCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCH-HHHHHHHHHHHHHHHhcchhhhcCCCccceeecc
Confidence 38999999999999999888888765322 233323221110000 0010000 00011 0 112345689
Q ss_pred CeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 601 PGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 601 ~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
++.++++++.+.+--. .......+||+.++.-+.+.|..
T Consensus 212 ~~~lirr~~~~~vGGf---~~~~~~~~ED~~L~~r~~~~G~~ 250 (384)
T TIGR03469 212 GCILIRREALERIGGI---AAIRGALIDDCTLAAAVKRSGGR 250 (384)
T ss_pred eEEEEEHHHHHHcCCH---HHHhhCcccHHHHHHHHHHcCCc
Confidence 9999999999987331 11122357999999999998854
No 33
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=88.81 E-value=18 Score=38.20 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=68.6
Q ss_pred HHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCC-CceEEEeeccC---------CCc-ccc-------cccccc
Q 005540 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPK-RSLYMGNLNLL---------HRP-LRT-------GKWAVT 585 (691)
Q Consensus 524 a~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~-~~lY~G~v~~~---------~~P-iR~-------sKwyVs 585 (691)
.+...+.+....+||+.+|+|+.+..+-|..++...... ..+..+.+... ..+ .+. ..|...
T Consensus 73 ~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (299)
T cd02510 73 RARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPL 152 (299)
T ss_pred HHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccC
Confidence 445666666789999999999999888777777654322 22333322110 000 010 011111
Q ss_pred ccC-----CC-CCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 586 YEE-----WP-QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 586 ~ee-----yp-~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
... .+ ....-+++.|+++++++++...+-. + ...+.....||+-+..-+.+.|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGg-f-De~~~~~~~ED~Dl~~R~~~~G~~ 213 (299)
T cd02510 153 PEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGG-Y-DEGMDIWGGENLELSFKVWQCGGS 213 (299)
T ss_pred CHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCC-C-CCcccccCchhHHHHHHHHHcCCe
Confidence 000 01 1233467789999999999998843 1 222333346999998888888865
No 34
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.42 E-value=2.5 Score=40.33 Aligned_cols=115 Identities=11% Similarity=-0.004 Sum_probs=70.6
Q ss_pred HHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhc--CCCCceEEEeeccCCCccc-cccccccccCCCCCCCCCCCCC
Q 005540 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI--FPKRSLYMGNLNLLHRPLR-TGKWAVTYEEWPQEVYPPYANG 600 (691)
Q Consensus 524 a~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~--~~~~~lY~G~v~~~~~PiR-~sKwyVs~eeyp~~~YPpY~~G 600 (691)
..+..+.+.+..+|++.+|+|.++..+.+...+... .+...+..|.......... ...+.........-....++.+
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICH 144 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccC
Confidence 445666677789999999999999999888887332 2334566666533111111 1111111111122234567788
Q ss_pred CeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 601 PGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 601 ~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
++.++++++.+.+-. + ...+...||..+..-+.+.|..
T Consensus 145 ~~~~~~~~~~~~~~~-f---~~~~~~~~D~~~~~r~~~~g~~ 182 (202)
T cd06433 145 QATFFRRSLFEKYGG-F---DESYRIAADYDLLLRLLLAGKI 182 (202)
T ss_pred cceEEEHHHHHHhCC-C---chhhCchhhHHHHHHHHHcCCc
Confidence 899999999988742 1 1123346899888888877754
No 35
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=88.11 E-value=4.6 Score=36.81 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=63.7
Q ss_pred ChhhHHHHHHhhhccCcEEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCC-CCceEE
Q 005540 489 RKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP-KRSLYM 567 (691)
Q Consensus 489 ~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~-~~~lY~ 567 (691)
+.+..+.+++-.+....+..+...++. -.-..+..+.+....+|++.+|||.++..+.|..+++.... ...+.+
T Consensus 38 ~d~~~~~~~~~~~~~~~i~~i~~~~n~-----g~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~ 112 (169)
T PF00535_consen 38 TDETEEILEEYAESDPNIRYIRNPENL-----GFSAARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVI 112 (169)
T ss_dssp SSSHHHHHHHHHCCSTTEEEEEHCCCS-----HHHHHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEE
T ss_pred ccccccccccccccccccccccccccc-----cccccccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEE
Confidence 334444455444445666666555443 22344445556667779999999999998866666655433 234555
Q ss_pred EeeccCCCcccc--cc-----cccc---ccCCCCCCCCCCCCCCeeEeCHHHHHHH
Q 005540 568 GNLNLLHRPLRT--GK-----WAVT---YEEWPQEVYPPYANGPGYVISSDIAKFI 613 (691)
Q Consensus 568 G~v~~~~~PiR~--sK-----wyVs---~eeyp~~~YPpY~~G~GYVLS~Dva~~I 613 (691)
|.........+. .. |... ........--+++.|++.++++++.+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 113 GSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp EEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred EEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 555432111110 00 0000 0011123344677889999999998764
No 36
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=87.63 E-value=11 Score=35.72 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=62.8
Q ss_pred HHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCccccccccccccCCCCCCCCCCCCCCeeE
Q 005540 525 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPGYV 604 (691)
Q Consensus 525 ~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~sKwyVs~eeyp~~~YPpY~~G~GYV 604 (691)
.+..+.+....+|++..|+|..+..+.|...++...+. ....|......... -.....|+++.
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~~----------------~~~~~~~~~~~ 132 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLLNEKL----------------TERGIRGCNMS 132 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeeccccc----------------ceeEeccceEE
Confidence 44556666789999999999999988888877766432 23333322111110 01345678888
Q ss_pred eCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 605 ISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 605 LS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
+.+.....+..- .........||+.++.-+.+.|+.
T Consensus 133 ~~r~~~~~~ggf--~~~~~~~~~eD~~l~~r~~~~g~~ 168 (182)
T cd06420 133 FWKKDLLAVNGF--DEEFTGWGGEDSELVARLLNSGIK 168 (182)
T ss_pred EEHHHHHHhCCC--CcccccCCcchHHHHHHHHHcCCc
Confidence 888887754321 222222347999999999988844
No 37
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.49 E-value=10 Score=36.95 Aligned_cols=92 Identities=15% Similarity=0.067 Sum_probs=59.5
Q ss_pred HHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcC-CCCceEEEeeccCCCccccccccccccCCCCCCCCCCCCCCe
Q 005540 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPG 602 (691)
Q Consensus 524 a~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~-~~~~lY~G~v~~~~~PiR~sKwyVs~eeyp~~~YPpY~~G~G 602 (691)
.+++++. ....+|++..|+|..+..+.|...+.... +.-.++.|...... + .++|
T Consensus 70 ~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-----~------------------~~~~ 125 (202)
T cd04185 70 EGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPD-----G------------------SFVG 125 (202)
T ss_pred HHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCC-----C------------------ceEE
Confidence 3455555 45789999999999999888777776654 22234433322110 0 3457
Q ss_pred eEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 603 YVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 603 YVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
.++.+++++.+--. ... -....||+.+..-+.+.|..
T Consensus 126 ~~~~~~~~~~~g~~--~~~-~~~~~eD~~~~~r~~~~G~~ 162 (202)
T cd04185 126 VLISRRVVEKIGLP--DKE-FFIWGDDTEYTLRASKAGPG 162 (202)
T ss_pred EEEeHHHHHHhCCC--Chh-hhccchHHHHHHHHHHcCCc
Confidence 89999999877321 111 12346999999999988865
No 38
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=86.96 E-value=5.5 Score=36.21 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=52.2
Q ss_pred HHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcC--CCCceEEEeeccCCCc---ccc------ccccccccCC-CC
Q 005540 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF--PKRSLYMGNLNLLHRP---LRT------GKWAVTYEEW-PQ 591 (691)
Q Consensus 524 a~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~--~~~~lY~G~v~~~~~P---iR~------sKwyVs~eey-p~ 591 (691)
..+.++.+..+.+|++.+|+|.++..+.|...+.... +.-.++.|........ ... ..+......+ ..
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 4455566667999999999999998877777644432 2223344444321111 110 0011110000 12
Q ss_pred CCCCCCCCCCeeEeCHHHHHHHH
Q 005540 592 EVYPPYANGPGYVISSDIAKFIV 614 (691)
Q Consensus 592 ~~YPpY~~G~GYVLS~Dva~~Iv 614 (691)
..+.+.+.|.+++++++++..+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23456788999999999998864
No 39
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=86.76 E-value=4.2 Score=38.03 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=65.2
Q ss_pred EEEeCCCCCHHHHHHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhh-----ccCcEEEecccccccchhHHH
Q 005540 448 IGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAA-----FFGDIVILPFMDRYELVVLKT 522 (691)
Q Consensus 448 I~V~Sap~nf~rR~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae-----~ygDII~~df~DsY~NLtlKT 522 (691)
|.|.+-++..+||..+++..... ++.+.||-|..........+..... .++ .+....----.+..
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~------~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~----~~l~~gEiGC~lSH 71 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL------GLDFEFFDAVDGKDLSEEELAALYDALFLPRYG----RPLTPGEIGCFLSH 71 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCCeEEEeccccccCCHHHHHHHhHHHhhhhcC----CCCChhhHHHHHHH
Confidence 45788899999999999855432 3456677665443222222222211 111 00000101111333
Q ss_pred HHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCccccccccccccCCCCCCCCCCCCCCe
Q 005540 523 IAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPG 602 (691)
Q Consensus 523 la~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~sKwyVs~eeyp~~~YPpY~~G~G 602 (691)
+.+++-+.+ -+.++.+-..||+.+..+ +..|
T Consensus 72 ~~~w~~~~~-~~~~~alIlEDDv~~~~~------------------------------------------------~~~~ 102 (128)
T cd06532 72 YKLWQKIVE-SNLEYALILEDDAILDPD------------------------------------------------GTAG 102 (128)
T ss_pred HHHHHHHHH-cCCCeEEEEccCcEECCC------------------------------------------------CceE
Confidence 444444443 256899999999998766 5568
Q ss_pred eEeCHHHHHHHHHH
Q 005540 603 YVISSDIAKFIVLQ 616 (691)
Q Consensus 603 YVLS~Dva~~Iv~~ 616 (691)
|++|+..|+++++.
T Consensus 103 Y~vs~~~A~~ll~~ 116 (128)
T cd06532 103 YLVSRKGAKKLLAA 116 (128)
T ss_pred EEeCHHHHHHHHHh
Confidence 99999999999986
No 40
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=85.97 E-value=25 Score=37.51 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=79.8
Q ss_pred cCcEEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCC-CceEEEeeccCCC----c-
Q 005540 503 FGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPK-RSLYMGNLNLLHR----P- 576 (691)
Q Consensus 503 ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~-~~lY~G~v~~~~~----P- 576 (691)
+.++..+...+++-=-. =.-..++++.... .+|++-.++|+.+..+.|.++++..... ...+.|....... +
T Consensus 55 ~~~v~~i~~~~NlG~ag-g~n~g~~~a~~~~-~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLGFAG-GFNRGIKYALAKG-DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCccchh-hhhHHHHHHhcCC-CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 77888776655541000 0013455554321 1299999999999999999988875433 2233333332110 1
Q ss_pred ----cc---cccc-cccccCCCC-----CCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 577 ----LR---TGKW-AVTYEEWPQ-----EVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 577 ----iR---~sKw-yVs~eeyp~-----~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
.. ...| .....+.+. ...-.++.|++.++++++.+.+-- -..--+..+||+-++.=+.+.|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~---~de~~F~y~eD~D~~~R~~~~G~~ 208 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGG---FDERFFIYYEDVDLCLRARKAGYK 208 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCC---CCcccceeehHHHHHHHHHHcCCe
Confidence 00 0122 222222222 112226799999999999999864 122235579999999999999964
No 41
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=85.74 E-value=33 Score=37.79 Aligned_cols=191 Identities=12% Similarity=0.060 Sum_probs=108.0
Q ss_pred cEEEEEEeCCCCCH-HHHHHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhhccCcEEEecccccccchhHHH
Q 005540 444 VHLFIGVLSATNHF-AERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKT 522 (691)
Q Consensus 444 v~LLI~V~Sap~nf-~rR~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKT 522 (691)
..+-|+|.+--.+. --.+.++..-.+. ..+..+.++.. ..+.+.-+.+.+-.+.+++.+.+... ..-...-
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d----yp~~evivv~d-~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~gK 125 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD----YPRYEVIVVDD-GSTDETYEILEELGAEYGPNFRVIYP---EKKNGGK 125 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC----CCCceEEEECC-CCChhHHHHHHHHHhhcCcceEEEec---cccCccc
Confidence 45556666655444 2334444333222 22344444444 33344445555555666533333311 1122233
Q ss_pred HHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCCCce-EEEeeccCCCcc-cc--ccc----ccc--cc--CCC
Q 005540 523 IAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSL-YMGNLNLLHRPL-RT--GKW----AVT--YE--EWP 590 (691)
Q Consensus 523 la~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~l-Y~G~v~~~~~Pi-R~--sKw----yVs--~e--eyp 590 (691)
...+.++.+..+.++|+..|-|+.+..|.|.+.+......... +.|.......+. .+ ++. |.. .. .+.
T Consensus 126 ~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (439)
T COG1215 126 AGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAA 205 (439)
T ss_pred hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhh
Confidence 5667778877789999999999999999999999887543332 444442211110 00 000 000 00 001
Q ss_pred -CCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCCCCccccc
Q 005540 591 -QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSH 649 (691)
Q Consensus 591 -~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~~pV~y~h 649 (691)
.......+.|++.++.+++++.+... ....--||..+++.+...|.+ +.|.+
T Consensus 206 ~~~g~~~~~~G~~~~~rr~aL~~~g~~-----~~~~i~ED~~lt~~l~~~G~~--~~~~~ 258 (439)
T COG1215 206 SKGGLISFLSGSSSAFRRSALEEVGGW-----LEDTITEDADLTLRLHLRGYR--VVYVP 258 (439)
T ss_pred hhcCCeEEEcceeeeEEHHHHHHhCCC-----CCCceeccHHHHHHHHHCCCe--EEEee
Confidence 12257889999999999999998631 123445999999999988866 44443
No 42
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=84.34 E-value=28 Score=35.30 Aligned_cols=114 Identities=12% Similarity=0.168 Sum_probs=68.5
Q ss_pred HHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCC-Cc-eEE-EeeccCCCccc-cccccc-cc--------cCCC
Q 005540 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPK-RS-LYM-GNLNLLHRPLR-TGKWAV-TY--------EEWP 590 (691)
Q Consensus 524 a~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~-~~-lY~-G~v~~~~~PiR-~sKwyV-s~--------eeyp 590 (691)
..+.++.+..+.+||+.+|+|+.+..+.|.+.+...... .. .++ |.+.....+.. -.+++. .. ....
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788999999999999999998888776422 22 222 22222111100 011100 00 0001
Q ss_pred CCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 591 QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 591 ~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
....+..++|++.++++++++.+-.. . .....||..+++-+.+.|.+
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~--~---~~~~~eD~~l~~rl~~~G~r 200 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGW--D---PFNVTEDADLGLRLARAGYR 200 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCC--C---cccchhhHHHHHHHHHCCce
Confidence 11234456889999999999987531 1 12346999999988887765
No 43
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=83.75 E-value=9.1 Score=40.22 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=95.1
Q ss_pred EEEeCCCCCHH-HHHHHHHHhccccccC-CCcEEEEEEEeeCCChhhHHH-------HHHhhhccCcEEEecccccccch
Q 005540 448 IGVLSATNHFA-ERMAIRKTWMQSSKIK-SSNVVARFFVALNPRKEVNAV-------LKKEAAFFGDIVILPFMDRYELV 518 (691)
Q Consensus 448 I~V~Sap~nf~-rR~aIR~TW~~~~~i~-~~~v~vrFfVG~~~~~~~~~~-------L~~Eae~ygDII~~df~DsY~NL 518 (691)
|+|.+--.... -...++..+....... ..++.+ |++....+.+.... |.+|....-.+.. ...-.|.
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~---~~r~~~~ 78 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYY---RRRRENT 78 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEE---EEcCCCC
Confidence 44555555544 4566666653110000 123445 77765555433211 2223222223333 3333444
Q ss_pred hHHHHHHHHHHhh-cCCceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCcc-cc---cccc----------
Q 005540 519 VLKTIAICEFGVQ-NVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPL-RT---GKWA---------- 583 (691)
Q Consensus 519 tlKTla~l~w~~~-~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~Pi-R~---sKwy---------- 583 (691)
-+|+-.+-..... ..+.+|++-.|.|+.+.++.|.+.+........ +|-+....... ++ .++.
T Consensus 79 g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~ 156 (254)
T cd04191 79 GRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLYGPV 156 (254)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHHHHH
Confidence 5566555444333 257899999999999999999998876531111 23222111100 00 1110
Q ss_pred --ccccCCCCCCCCCCCCCCeeEeCHHHHHHHHHHh---cCCcc-CCCCCChHHHHHHHHHcCCC
Q 005540 584 --VTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQH---GNQSL-RLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 584 --Vs~eeyp~~~YPpY~~G~GYVLS~Dva~~Iv~~~---~~~~l-~~f~~EDV~iGi~l~~lgi~ 642 (691)
.....|... -.+|.|...++.++++..+..-. ..... .-.-.||..+|+.+...|.+
T Consensus 157 ~~~~~~~~~~~--~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~r 219 (254)
T cd04191 157 FGRGLAAWQGG--EGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWE 219 (254)
T ss_pred HHHHHHHhcCC--ccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCE
Confidence 000112111 13566999999999988753210 00111 12346999999999988865
No 44
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=82.54 E-value=5.1 Score=38.95 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=64.0
Q ss_pred EEEEecCcccccHHHHHHHHHhcC-CCCceEEEeeccCCCcccc--ccccccccC------C---CCCCCCCCCCCCeeE
Q 005540 537 YIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNLNLLHRPLRT--GKWAVTYEE------W---PQEVYPPYANGPGYV 604 (691)
Q Consensus 537 fvmKvDDDtfVnvd~Ll~~L~~~~-~~~~lY~G~v~~~~~PiR~--sKwyVs~ee------y---p~~~YPpY~~G~GYV 604 (691)
||+.+|+|+-+..+.|.+.+.... +.-.+.-|.+... +..+ .++...... . ..-..+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR--NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec--CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999998888877664 2333443444321 1111 111111100 0 123357788999999
Q ss_pred eCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 605 ISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 605 LS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
+++++++.+.-- . -.....||..++.-+.+.|.+
T Consensus 79 ~r~~~l~~vg~~--~--~~~~~~ED~~l~~~l~~~G~~ 112 (193)
T PF13632_consen 79 FRREALREVGGF--D--DPFSIGEDMDLGFRLRRAGYR 112 (193)
T ss_pred eeHHHHHHhCcc--c--ccccccchHHHHHHHHHCCCE
Confidence 999999988531 1 234556999999999988865
No 45
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=82.46 E-value=18 Score=35.01 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=74.6
Q ss_pred ChhhHHHHHHhhhccCcEEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcC--CCCceE
Q 005540 489 RKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF--PKRSLY 566 (691)
Q Consensus 489 ~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~--~~~~lY 566 (691)
+..+...+.+-.+.+. +..+....+. - + -..+..+....+.+|++.+|+|.++..+.|...+.... +...++
T Consensus 41 ~d~t~~~~~~~~~~~~-i~~i~~~~n~---G-~-~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~ 114 (201)
T cd04195 41 TQSLNEVLEEFKRKLP-LKVVPLEKNR---G-L-GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIV 114 (201)
T ss_pred chhHHHHHHHHHhcCC-eEEEEcCccc---c-H-HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEE
Confidence 3344444444445555 4444332221 1 1 22355666667899999999999999988888777643 333455
Q ss_pred EEeeccCCCcccc--ccccccc-----cCCCCCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHc
Q 005540 567 MGNLNLLHRPLRT--GKWAVTY-----EEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQF 639 (691)
Q Consensus 567 ~G~v~~~~~PiR~--sKwyVs~-----eeyp~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~l 639 (691)
.|.........+. .+. .+. ..+....- + ..+++.++.+.++..+-.- . .....||..+...+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~rr~~~~~~g~~---~--~~~~~eD~~~~~r~~~~ 186 (201)
T cd04195 115 GGGVLEFDSDGNDIGKRR-LPTSHDDILKFARRRS-P-FNHPTVMFRKSKVLAVGGY---Q--DLPLVEDYALWARMLAN 186 (201)
T ss_pred cccEEEECCCCCeecccc-CCCCHHHHHHHhccCC-C-CCChHHhhhHHHHHHcCCc---C--CCCCchHHHHHHHHHHc
Confidence 5554321111000 000 000 00100011 1 2456677787777665321 1 12568999999888877
Q ss_pred CCC
Q 005540 640 NST 642 (691)
Q Consensus 640 gi~ 642 (691)
|..
T Consensus 187 g~~ 189 (201)
T cd04195 187 GAR 189 (201)
T ss_pred CCc
Confidence 754
No 46
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=82.00 E-value=60 Score=32.99 Aligned_cols=111 Identities=7% Similarity=-0.074 Sum_probs=65.0
Q ss_pred HHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcC-CCCceEEEeeccCCC------cccc--c---cccccccCCCCC
Q 005540 525 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNLNLLHR------PLRT--G---KWAVTYEEWPQE 592 (691)
Q Consensus 525 ~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~-~~~~lY~G~v~~~~~------PiR~--s---KwyVs~eeyp~~ 592 (691)
++..+......+|++.+|+|..+.++.|.+.+.... ....+.+|....... ..|. + .+.... ... .
T Consensus 84 a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~-~ 161 (243)
T PLN02726 84 AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQT-LLW-P 161 (243)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHH-HhC-C
Confidence 455566666789999999999999998888887653 234566676432110 1111 1 111111 111 1
Q ss_pred CCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 593 VYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 593 ~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
. -+.+.|++.++++++++.+.... . .. ....|.-+...+...|..
T Consensus 162 ~-~~d~~g~~~~~rr~~~~~i~~~~-~--~~-~~~~~~el~~~~~~~g~~ 206 (243)
T PLN02726 162 G-VSDLTGSFRLYKRSALEDLVSSV-V--SK-GYVFQMEIIVRASRKGYR 206 (243)
T ss_pred C-CCcCCCcccceeHHHHHHHHhhc-c--CC-CcEEehHHHHHHHHcCCc
Confidence 1 12357888899999999997531 1 11 123466666666666654
No 47
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=80.53 E-value=64 Score=32.02 Aligned_cols=106 Identities=13% Similarity=0.051 Sum_probs=58.4
Q ss_pred CceEEEEecCcccccHHHHHHHH--Hh-cCCCCc-eEEEeeccC-CCcc-----ccccccccccCCCCCC--CCCCCCCC
Q 005540 534 TAAYIMKCDDDTFIRVDAVLKEI--EG-IFPKRS-LYMGNLNLL-HRPL-----RTGKWAVTYEEWPQEV--YPPYANGP 601 (691)
Q Consensus 534 ~akfvmKvDDDtfVnvd~Ll~~L--~~-~~~~~~-lY~G~v~~~-~~Pi-----R~sKwyVs~eeyp~~~--YPpY~~G~ 601 (691)
+++|++..|+|+.+.++.|...+ .. ...... ..+|..... .... +...|........... -..++.|+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITS 154 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeecc
Confidence 67999999999999988888875 22 222112 222332211 1110 0011111000111111 12355678
Q ss_pred eeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 602 GYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 602 GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
|.++++++.+.+-.- ... .+...||+.+.+-+.+.|..
T Consensus 155 ~~~~rr~~~~~~ggf--d~~-~~~~~eD~d~~~r~~~~G~~ 192 (237)
T cd02526 155 GSLISLEALEKVGGF--DED-LFIDYVDTEWCLRARSKGYK 192 (237)
T ss_pred ceEEcHHHHHHhCCC--CHH-HcCccchHHHHHHHHHcCCc
Confidence 889999999887421 111 12346899999999988865
No 48
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=77.47 E-value=15 Score=34.76 Aligned_cols=116 Identities=13% Similarity=0.150 Sum_probs=65.1
Q ss_pred HHHHHHhhhccCcEEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHh-cCCCCceEEEeec
Q 005540 493 NAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEG-IFPKRSLYMGNLN 571 (691)
Q Consensus 493 ~~~L~~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~-~~~~~~lY~G~v~ 571 (691)
...++.-...+..+..+....+.. | -..+..+.+....+|++.+|+|..+..+.|.+++.. ......+.+|...
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~ 117 (185)
T cd04179 43 AEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF 117 (185)
T ss_pred HHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEee
Confidence 344444445555655554444332 1 134445555566699999999999999988888876 3444556667654
Q ss_pred cCCC----c-ccc-ccccccc--cCCCCCCCCCCCCCCeeEeCHHHHHHHH
Q 005540 572 LLHR----P-LRT-GKWAVTY--EEWPQEVYPPYANGPGYVISSDIAKFIV 614 (691)
Q Consensus 572 ~~~~----P-iR~-sKwyVs~--eeyp~~~YPpY~~G~GYVLS~Dva~~Iv 614 (691)
.... + .+. ..+.... ... ...-.....|+.+++++++++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 118 VRGGGAGMPLLRRLGSRLFNFLIRLL-LGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHH-cCCCCcCCCCceeeeHHHHHHHHH
Confidence 3221 1 111 1110000 000 111233456777899999999985
No 49
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=77.22 E-value=28 Score=34.33 Aligned_cols=159 Identities=15% Similarity=0.050 Sum_probs=83.1
Q ss_pred EEEEEEEeeCCChhhHHHHHHhhhccCcE-EEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHH
Q 005540 478 VVARFFVALNPRKEVNAVLKKEAAFFGDI-VILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEI 556 (691)
Q Consensus 478 v~vrFfVG~~~~~~~~~~L~~Eae~ygDI-I~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L 556 (691)
..++.+-..+.+. ....+++..+.++.. ..+....+ .- +. .++..+.+....+|++.+|+|....++.+...+
T Consensus 31 ~eiivvdd~S~D~-t~~~~~~~~~~~~~~i~~i~~~~n---~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l~ 104 (211)
T cd04188 31 YEIIVVDDGSKDG-TAEVARKLARKNPALIRVLTLPKN---RG-KG-GAVRAGMLAARGDYILFADADLATPFEELEKLE 104 (211)
T ss_pred EEEEEEeCCCCCc-hHHHHHHHHHhCCCcEEEEEcccC---CC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence 4444443433332 334445555556654 33332222 11 22 344445556677999999999999999998888
Q ss_pred Hh-cCCCCceEEEeeccCCC-------cccc--ccc--cccccCCCCCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCC
Q 005540 557 EG-IFPKRSLYMGNLNLLHR-------PLRT--GKW--AVTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRL 624 (691)
Q Consensus 557 ~~-~~~~~~lY~G~v~~~~~-------PiR~--sKw--yVs~eeyp~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~ 624 (691)
+. ......+.+|....... ..|. ++. +...-.. ...+. -+..+..++++.++..+... ....
T Consensus 105 ~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-d~~~g~~~~~r~~~~~~~~~---~~~~- 178 (211)
T cd04188 105 EALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLL-GLGIK-DTQCGFKLFTRDAARRLFPR---LHLE- 178 (211)
T ss_pred HHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHc-CCCCc-ccccCceeEcHHHHHHHHhh---hhcc-
Confidence 86 34445667776543211 1111 110 0000000 11111 12335689999999998743 1111
Q ss_pred CCCChHHHHHHHHHcCCCC---Ccccc
Q 005540 625 FKMEDVSMGMWVEQFNSTM---TVRYS 648 (691)
Q Consensus 625 f~~EDV~iGi~l~~lgi~~---pV~y~ 648 (691)
...+|.-+-.-+.+.|... |+.|.
T Consensus 179 ~~~~d~el~~r~~~~g~~~~~vpi~~~ 205 (211)
T cd04188 179 RWAFDVELLVLARRLGYPIEEVPVRWV 205 (211)
T ss_pred ceEeeHHHHHHHHHcCCeEEEcCccee
Confidence 2245887777777777542 55543
No 50
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=71.46 E-value=38 Score=39.43 Aligned_cols=139 Identities=13% Similarity=0.027 Sum_probs=73.4
Q ss_pred CceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCcccc--ccccccccCCCC---------CC--CCCCCCC
Q 005540 534 TAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKWAVTYEEWPQ---------EV--YPPYANG 600 (691)
Q Consensus 534 ~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~--sKwyVs~eeyp~---------~~--YPpY~~G 600 (691)
++++++..|-|..+.++.|....... +...+.-..+....++... +..|. .+|.+ +. -+..+.|
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~~~~-~~~~~VQ~pv~~~~~~~~~~~ag~y~--~ef~~~~~~~l~~r~~LG~~~~~~G 234 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYNYLL-PRHDFVQLPVFSLPRDWGEWVAGTYM--DEFAESHLKDLPVREALGGLIPSAG 234 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHHhhc-CCCCEEecceeccCCchhHHHHHHHH--HHHHHHHHHHHHHHHhcCCccccCC
Confidence 46999999999999999976543322 2222211111111111110 11111 11111 11 2345689
Q ss_pred CeeEeCHHHHHHHHHHhcCCcc-CCCCCChHHHHHHHHHcCCCCCcccccCCccc----cCCcCCceEEEecCCHHHHHH
Q 005540 601 PGYVISSDIAKFIVLQHGNQSL-RLFKMEDVSMGMWVEQFNSTMTVRYSHSWKFC----QYGCMEGYYTAHYQSPRQMIC 675 (691)
Q Consensus 601 ~GYVLS~Dva~~Iv~~~~~~~l-~~f~~EDV~iGi~l~~lgi~~pV~y~h~~~fc----~~~C~~~~it~H~~sP~~M~~ 675 (691)
.|+.+++++++.+.....-... .-.-.||.-+|+-+...|.+ +.|.+..-.. ...+ +..++...+.|..+..
T Consensus 235 tg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~r--v~y~p~ai~~~~~~~~~~-~~~v~t~e~~P~t~~a 311 (504)
T PRK14716 235 VGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFR--QIFVRVRADDTTDRPDRR-GEPIATREFFPDTFKA 311 (504)
T ss_pred eeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCE--EEEecccccccccccccc-cccccccccCccCHHH
Confidence 9999999999998653110001 12346999999999999976 4443322000 0111 2334454555666655
Q ss_pred HHH
Q 005540 676 LWD 678 (691)
Q Consensus 676 lW~ 678 (691)
+|+
T Consensus 312 ~~r 314 (504)
T PRK14716 312 AVR 314 (504)
T ss_pred HHH
Confidence 554
No 51
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=71.13 E-value=1.2e+02 Score=31.88 Aligned_cols=159 Identities=14% Similarity=0.034 Sum_probs=89.8
Q ss_pred cEEEEEEEeeCCChhhHHHHHHhhhccCcE-EE-ecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHH
Q 005540 477 NVVARFFVALNPRKEVNAVLKKEAAFFGDI-VI-LPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLK 554 (691)
Q Consensus 477 ~v~vrFfVG~~~~~~~~~~L~~Eae~ygDI-I~-~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~ 554 (691)
++.++++=+.+ ..+....|.+-.+.++-+ ++ .+....+.+.+ .+..-+.+....+||+.+|.|+++..+.+.+
T Consensus 34 ~~eiIvvd~~s-~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~~i~~ 108 (281)
T PF10111_consen 34 DFEIIVVDDGS-SDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPDFIEK 108 (281)
T ss_pred CEEEEEEECCC-chhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHHHHHH
Confidence 44444433322 233446777777777766 32 22222222222 3344556667999999999999999999988
Q ss_pred HHH---hcCC-CCceEEEeeccCCCcccc-----cccccccc---CC---CCCCC-CCCCCCCeeEeCHHHHHHHHHHhc
Q 005540 555 EIE---GIFP-KRSLYMGNLNLLHRPLRT-----GKWAVTYE---EW---PQEVY-PPYANGPGYVISSDIAKFIVLQHG 618 (691)
Q Consensus 555 ~L~---~~~~-~~~lY~G~v~~~~~PiR~-----sKwyVs~e---ey---p~~~Y-PpY~~G~GYVLS~Dva~~Iv~~~~ 618 (691)
.+. .+.. ...++++-+.....+.-. .+...... .. ..+.+ ..+..|++.+++++.-..|---
T Consensus 109 ~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGf-- 186 (281)
T PF10111_consen 109 LLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGF-- 186 (281)
T ss_pred HHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCC--
Confidence 888 4432 234444444333222110 10000000 00 11122 1334569999999999888642
Q ss_pred CCccCCCCCChHHHHHHHHHcCCC
Q 005540 619 NQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 619 ~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
.........||.-++.=+.+.+..
T Consensus 187 DE~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 187 DERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred CccccCCCcchHHHHHHHHHcCCc
Confidence 233334568999999999988865
No 52
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=66.48 E-value=89 Score=32.46 Aligned_cols=114 Identities=7% Similarity=0.076 Sum_probs=60.7
Q ss_pred HHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCC--CceEEEeeccCCC-----c-ccccccccccc--CCCCCC-
Q 005540 525 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPK--RSLYMGNLNLLHR-----P-LRTGKWAVTYE--EWPQEV- 593 (691)
Q Consensus 525 ~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~--~~lY~G~v~~~~~-----P-iR~sKwyVs~e--eyp~~~- 593 (691)
+++++.+ .+++||+.+|||+.+..+.|...++..... .-.++|....... | .+...+..+.. ......
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQ 143 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCce
Confidence 4455543 378999999999999988777777654322 2223332211110 0 01011111100 001111
Q ss_pred CCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 594 YPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 594 YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
-..++.++|.++++++++.+--- ...+ ++..||+-+..=+.+.|.+
T Consensus 144 ~~~~~~~sg~li~~~~~~~iG~f--de~~-fi~~~D~e~~~R~~~~G~~ 189 (281)
T TIGR01556 144 KTSFLISSGCLITREVYQRLGMM--DEEL-FIDHVDTEWSLRAQNYGIP 189 (281)
T ss_pred eccEEEcCcceeeHHHHHHhCCc--cHhh-cccchHHHHHHHHHHCCCE
Confidence 11344566778999999987320 1111 3456899888888887764
No 53
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=65.90 E-value=8.3 Score=40.91 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=33.1
Q ss_pred CCCeeEeCHHHHHHHHHHhcCCcc---CCCCCChHHHHHHHHHcCCC
Q 005540 599 NGPGYVISSDIAKFIVLQHGNQSL---RLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 599 ~G~GYVLS~Dva~~Iv~~~~~~~l---~~f~~EDV~iGi~l~~lgi~ 642 (691)
+|+|+.||..+|+.|.+... .++ +.+.--|-.+..|+.++|+.
T Consensus 12 GGgG~~iS~pLa~~L~~~~d-~C~~r~~~~~g~D~~i~~C~~~lgv~ 57 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQD-DCIERYPHLYGGDQRIQACIAELGVP 57 (255)
T ss_pred cCceeEEcHHHHHHHHHHHH-HHHHhcCCCCCchHHHHHHHHHhCCC
Confidence 89999999999999987532 222 33344799999999999864
No 54
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=65.78 E-value=60 Score=31.79 Aligned_cols=87 Identities=8% Similarity=-0.005 Sum_probs=51.7
Q ss_pred HHHHHhhcCCceEEEEecCcccccHHHHHHHHHh-cCCCCceEEEeeccCCCcccc-----------ccccccccCCCCC
Q 005540 525 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEG-IFPKRSLYMGNLNLLHRPLRT-----------GKWAVTYEEWPQE 592 (691)
Q Consensus 525 ~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~-~~~~~~lY~G~v~~~~~PiR~-----------sKwyVs~eeyp~~ 592 (691)
.+..+.+....+|++.+|+|..+.++.|...++. ..+...+..|........... ..++... + ..
T Consensus 69 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~ 145 (224)
T cd06442 69 AYIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARL--L-LG 145 (224)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHH--H-cC
Confidence 3444555556799999999999999988888876 333445555654322111110 0011000 0 01
Q ss_pred CCCCCCCCCeeEeCHHHHHHHH
Q 005540 593 VYPPYANGPGYVISSDIAKFIV 614 (691)
Q Consensus 593 ~YPpY~~G~GYVLS~Dva~~Iv 614 (691)
.-.+.+.|++.++++++++.+.
T Consensus 146 ~~~~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 146 RKVSDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCCCCCccchhhHHHHHHHh
Confidence 1134567888899999999987
No 55
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=64.12 E-value=1.2e+02 Score=32.93 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=70.7
Q ss_pred cEEEEEEEeeCCChhhHHHHHHhhhccCc-EEEecccccccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHH
Q 005540 477 NVVARFFVALNPRKEVNAVLKKEAAFFGD-IVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKE 555 (691)
Q Consensus 477 ~v~vrFfVG~~~~~~~~~~L~~Eae~ygD-II~~df~DsY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~ 555 (691)
...++++-..+++.+. +.+++-++.+++ ++......++- |.- ++.-+.++.+.+|++.+|.|.-.+++.+.+.
T Consensus 38 ~~EIIvVDDgS~D~T~-~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 38 EYEILLIDDGSSDNSA-EMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CEEEEEEeCCCCCcHH-HHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Confidence 4556666555555432 233333334443 44443333332 222 3334555668999999999999999999998
Q ss_pred HHhcCCCCceEEEeecc-CCCcccc--cc---ccccccCCCCCCCCCCCCCCeeEeCHHHHHHHHH
Q 005540 556 IEGIFPKRSLYMGNLNL-LHRPLRT--GK---WAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVL 615 (691)
Q Consensus 556 L~~~~~~~~lY~G~v~~-~~~PiR~--sK---wyVs~eeyp~~~YPpY~~G~GYVLS~Dva~~Iv~ 615 (691)
++......++..|.... ...+.|. ++ +.+. ......++.+..| .-++++++++.+..
T Consensus 112 ~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~--~~~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 112 VAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQ--RTTGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHH--HHcCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88764433455454322 1233332 22 1111 1112334444333 34899999999865
No 56
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=62.83 E-value=1.7e+02 Score=35.63 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=69.3
Q ss_pred chhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCCCce-EEEee-c-cCCCcc-cc-cc-ccccccC--
Q 005540 517 LVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSL-YMGNL-N-LLHRPL-RT-GK-WAVTYEE-- 588 (691)
Q Consensus 517 NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~l-Y~G~v-~-~~~~Pi-R~-sK-wyVs~ee-- 588 (691)
|...|.- .++.+.++.+.+|++..|.|+.+..+.|.+.+.....+..+ +++.. . .+..|+ |+ +. ..++.+.
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3334543 35667777789999999999999999888877665221221 11111 1 111222 11 00 0011000
Q ss_pred -C----C--CCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 589 -W----P--QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 589 -y----p--~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
| + ...-..++.|++.++.+++.+.+--- .. ..-.||..+++-+.+.|.+
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf--~~---~~vtED~~l~~rL~~~G~~ 346 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGI--AG---ETVTEDAETALKLHRRGWN 346 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCC--CC---CCcCcHHHHHHHHHHcCCe
Confidence 0 0 00112456799999999999987421 11 1237999999999998876
No 57
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=57.87 E-value=1.4e+02 Score=37.33 Aligned_cols=117 Identities=13% Similarity=0.062 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhc--CCCCceEEEeec-cCCCcc-cc-ccc-ccccc-C--C-
Q 005540 520 LKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI--FPKRSLYMGNLN-LLHRPL-RT-GKW-AVTYE-E--W- 589 (691)
Q Consensus 520 lKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~--~~~~~lY~G~v~-~~~~Pi-R~-sKw-yVs~e-e--y- 589 (691)
.|.- .++.+.++.+.+|++..|.|+.+..+.|...+... +++-.+.-+... .+..|. |+ +.. ..+.+ + |
T Consensus 326 gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~ 404 (852)
T PRK11498 326 AKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYG 404 (852)
T ss_pred chHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHH
Confidence 3443 46677777889999999999999988888766442 232222211111 111121 11 100 00000 0 0
Q ss_pred ---C--CCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 590 ---P--QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 590 ---p--~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
+ ...--.++.|++.++.+++++.+--- .. . ...||..+++-+...|.+
T Consensus 405 ~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGf--d~--~-titED~dlslRL~~~Gyr 457 (852)
T PRK11498 405 LVQDGNDMWDATFFCGSCAVIRRKPLDEIGGI--AV--E-TVTEDAHTSLRLHRRGYT 457 (852)
T ss_pred HHHhHHHhhcccccccceeeeEHHHHHHhcCC--CC--C-ccCccHHHHHHHHHcCCE
Confidence 0 00012457899999999999998431 11 1 236999999999999875
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=56.36 E-value=1.4e+02 Score=26.11 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=52.7
Q ss_pred HHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcC--CCCceEEEeeccCCCccccccccccccCCCCCCCCCCCCCC
Q 005540 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF--PKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGP 601 (691)
Q Consensus 524 a~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~--~~~~lY~G~v~~~~~PiR~sKwyVs~eeyp~~~YPpY~~G~ 601 (691)
..+.++....+.+|++.+|+|..+..+.+...+.... +...+..|. +
T Consensus 67 ~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~-------------------------------~ 115 (156)
T cd00761 67 AARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP-------------------------------G 115 (156)
T ss_pred HHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc-------------------------------c
Confidence 3344455555899999999999999888877643322 212222111 7
Q ss_pred eeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcC
Q 005540 602 GYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFN 640 (691)
Q Consensus 602 GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lg 640 (691)
++++++++.+.+... .......-||..+...+.+.+
T Consensus 116 ~~~~~~~~~~~~~~~---~~~~~~~~ed~~~~~~~~~~g 151 (156)
T cd00761 116 NLLFRRELLEEIGGF---DEALLSGEEDDDFLLRLLRGG 151 (156)
T ss_pred hheeeHHHHHHhCCc---chHhcCCcchHHHHHHHHhhc
Confidence 899999999987542 111122268888877776655
No 59
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=54.65 E-value=2.1e+02 Score=27.80 Aligned_cols=106 Identities=18% Similarity=0.134 Sum_probs=60.8
Q ss_pred HHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccC----CCccc--cccccccccCCCCCCCCCCCC
Q 005540 526 CEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLL----HRPLR--TGKWAVTYEEWPQEVYPPYAN 599 (691)
Q Consensus 526 l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~----~~PiR--~sKwyVs~eeyp~~~YPpY~~ 599 (691)
+..+......+|++.+|+|..+..+.+.+.+........ .+|..... ....+ ..++.... .....+| +
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~ 137 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADGA-VAGAFRLRFDDPGPRLRLLELGANLRS----RLFGLPY-G 137 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCc-EEEEEEeeecCCccchhhhhhccccee----cccCCCc-C
Confidence 344555567899999999999998877776655443322 33332211 11111 01111110 0111122 4
Q ss_pred CCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 600 GPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 600 G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
+.+.++++++.+.+-.- .. .+..||.-++.-+.+.|..
T Consensus 138 ~~~~~~r~~~~~~~G~f--d~---~~~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 138 DQGLFIRRELFEELGGF--PE---LPLMEDVELVRRLRRRGRP 175 (221)
T ss_pred CceEEEEHHHHHHhCCC--Cc---cccccHHHHHHHHHhCCCE
Confidence 56889999998887431 11 1277999999888888854
No 60
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=53.37 E-value=1.5e+02 Score=36.05 Aligned_cols=198 Identities=13% Similarity=0.037 Sum_probs=101.8
Q ss_pred CcEEEEEEeCCCCCHHH-HHHHHHHhccccccC-CCcEEEEEEEeeCCChhhHH----HHHHhhhcc---CcEEEecccc
Q 005540 443 PVHLFIGVLSATNHFAE-RMAIRKTWMQSSKIK-SSNVVARFFVALNPRKEVNA----VLKKEAAFF---GDIVILPFMD 513 (691)
Q Consensus 443 ~v~LLI~V~Sap~nf~r-R~aIR~TW~~~~~i~-~~~v~vrFfVG~~~~~~~~~----~L~~Eae~y---gDII~~df~D 513 (691)
...+-|+|.+--...++ +..|+.++.+-.... ..++.+ |++....+.++.. .+.+-.++| ..|... .
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr---~ 198 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYR---R 198 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEE---E
Confidence 34555666655544332 366777775432211 123444 7777665544321 112222333 344443 2
Q ss_pred cccchhHHHHHHHHHHhhc-CCceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCccc-c---ccc------
Q 005540 514 RYELVVLKTIAICEFGVQN-VTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLR-T---GKW------ 582 (691)
Q Consensus 514 sY~NLtlKTla~l~w~~~~-~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR-~---sKw------ 582 (691)
.-.|.-.|.-.+-.|.... .+++|++-.|-|+.+..|.|.+.+.....+.. +|-+.....+.. + .++
T Consensus 199 R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~qqf~~~ 276 (691)
T PRK05454 199 RRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARLQQFATR 276 (691)
T ss_pred CCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHHHHHHHH
Confidence 3344556777666655442 47899999999999999999998876532111 244432222111 1 111
Q ss_pred -cc-----cccCCCCCCCCCCCCCCeeEeCHHHHHHHHHHh-cCCccC---CCCCChHHHHHHHHHcCCCCCcccccC
Q 005540 583 -AV-----TYEEWPQEVYPPYANGPGYVISSDIAKFIVLQH-GNQSLR---LFKMEDVSMGMWVEQFNSTMTVRYSHS 650 (691)
Q Consensus 583 -yV-----s~eeyp~~~YPpY~~G~GYVLS~Dva~~Iv~~~-~~~~l~---~f~~EDV~iGi~l~~lgi~~pV~y~h~ 650 (691)
|- ...-|-. .--.| .|...|+.+++...+..-. .....+ -.--||..+|..+...|.+ +.|..+
T Consensus 277 ~y~~~~~~G~~~w~~-~~g~f-~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~Gyr--V~~~pd 350 (691)
T PRK05454 277 VYGPLFAAGLAWWQG-GEGNY-WGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWG--VWLAPD 350 (691)
T ss_pred HHHHHHHhhhhhhcc-Ccccc-ccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCE--EEEcCc
Confidence 00 0000110 01122 4777788888776653100 001111 2345899999999999976 544443
No 61
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=53.20 E-value=2.4e+02 Score=28.02 Aligned_cols=113 Identities=14% Similarity=0.033 Sum_probs=61.3
Q ss_pred HHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCCCC-ceEEEeeccCCC---cc-cc---c-cccccccCCC--CCC
Q 005540 525 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKR-SLYMGNLNLLHR---PL-RT---G-KWAVTYEEWP--QEV 593 (691)
Q Consensus 525 ~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~-~lY~G~v~~~~~---Pi-R~---s-KwyVs~eeyp--~~~ 593 (691)
.+..+.+..+.+|++.+|.|+.+..+.|...+......+ .+..|.+..... .+ +- + .++...+.+. ...
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTG 157 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcC
Confidence 456666777899999999999999998888554432222 233333221110 01 00 0 0000000000 011
Q ss_pred CCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 005540 594 YPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 594 YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
....+.|++-++.+++++.+-- + .. ....||+.++.-+...|.+
T Consensus 158 ~~~~~~g~~~~~rr~~~~~vgg-~-~~---~~~~ED~~l~~rl~~~G~~ 201 (232)
T cd06437 158 LFFNFNGTAGVWRKECIEDAGG-W-NH---DTLTEDLDLSYRAQLKGWK 201 (232)
T ss_pred CeEEeccchhhhhHHHHHHhCC-C-CC---CcchhhHHHHHHHHHCCCe
Confidence 1112356666788888887632 1 11 1247999999988877754
No 62
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=52.60 E-value=1.1e+02 Score=33.94 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=49.5
Q ss_pred HHHHHhhcCCceEEEEecCcccccHH---HHHHHHHhcCCCCceEEEeeccCCCccccccccccccCCCCCCCC-CCCCC
Q 005540 525 ICEFGVQNVTAAYIMKCDDDTFIRVD---AVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYP-PYANG 600 (691)
Q Consensus 525 ~l~w~~~~~~akfvmKvDDDtfVnvd---~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~sKwyVs~eeyp~~~YP-pY~~G 600 (691)
++.|+....++++++.+|||..+.++ -+.+.|..+.....++ .+...+. +|+....... |...|- .|+.|
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~Nd---nG~~~~~~~~-~~~lyrs~ff~g 161 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAWND---NGKEHFVDDT-PSLLYRTDFFPG 161 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEeecc---CCcccccCCC-cceEEEecCCCc
Confidence 56666555579999999999999998 3344444444444443 2222111 2322111111 333333 57889
Q ss_pred CeeEeCHHHHHHH
Q 005540 601 PGYVISSDIAKFI 613 (691)
Q Consensus 601 ~GYVLS~Dva~~I 613 (691)
.|.++.+++-+.+
T Consensus 162 lGWml~r~~W~e~ 174 (334)
T cd02514 162 LGWMLTRKLWKEL 174 (334)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999988777
No 63
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=48.36 E-value=22 Score=33.95 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=20.0
Q ss_pred cccccccCCCCCCCCCCCCCCCeEEEEEEEccc---------eEEEEeCC
Q 005540 339 KRFIGREQKPEVTWPFPFVEGRLFILTLRAGVE---------GYHINVGG 379 (691)
Q Consensus 339 ~~~~~~~~~~~~~~~fPF~~g~~F~lti~~g~e---------gfhv~VnG 379 (691)
-||+||.. .|+.|.|||.+..+ .++|+|||
T Consensus 87 LRFvGRSG-----------RGKsFtltItv~t~PpqvAty~~AIKVTVDG 125 (135)
T PF00853_consen 87 LRFVGRSG-----------RGKSFTLTITVFTNPPQVATYHRAIKVTVDG 125 (135)
T ss_dssp -EECST-T-----------TTSEEEEEEEE-SSS-EEEEECCEEEEESS-
T ss_pred cccccccC-----------CccceEEEEEEeCCCchHHhheeeEEEEecC
Confidence 47899865 59999999998755 45566666
No 64
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=44.82 E-value=36 Score=34.89 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=64.0
Q ss_pred cCCceEEEEecCcccccHHHHHHHHHhcC--CCCceEEEeeccCCC---cc-cc-c-ccccc----ccCCCCCCCCCCCC
Q 005540 532 NVTAAYIMKCDDDTFIRVDAVLKEIEGIF--PKRSLYMGNLNLLHR---PL-RT-G-KWAVT----YEEWPQEVYPPYAN 599 (691)
Q Consensus 532 ~~~akfvmKvDDDtfVnvd~Ll~~L~~~~--~~~~lY~G~v~~~~~---Pi-R~-s-KwyVs----~eeyp~~~YPpY~~ 599 (691)
..+.+|++.+|.|+.+..+.|...+..+. +.-....|.+..... ++ +- . -|... ......-.+...+.
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~ 150 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLP 150 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECC
Confidence 34899999999999999999888877652 322334455433211 10 00 0 01000 00001123567789
Q ss_pred CCeeEeCHHHHHHHHHHhcC--------Ccc-------CCCCCChHHHHHHHHHcCCC
Q 005540 600 GPGYVISSDIAKFIVLQHGN--------QSL-------RLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 600 G~GYVLS~Dva~~Iv~~~~~--------~~l-------~~f~~EDV~iGi~l~~lgi~ 642 (691)
|+++++.+++++.+...... ..+ .....||..++..+...|..
T Consensus 151 G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~ 208 (244)
T cd04190 151 GCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPK 208 (244)
T ss_pred CceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCc
Confidence 99999999998876321100 000 12246999998888877754
No 65
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=41.78 E-value=84 Score=33.87 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=71.1
Q ss_pred ecCCcCCCCCCCCeeEEEeeeeCCCCCCCCEEEEeCccC-CccccceecCCCCCCCCcccccchhhhhhhccccCccccc
Q 005540 252 LQGLKSVDGEDPPKILHLNPRIKGDWSHRPVIEHNTCYR-MQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSK 330 (691)
Q Consensus 252 L~g~~~~~~~~~~i~LH~NpRl~~d~~~~pvIv~NT~~~-~~WG~eeRc~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~ 330 (691)
|.+-+.+.|. |.+-| |.|.. |+ .+.|--+-| .-|.-|..-+..++..+. +||-.+|-+.-.+.
T Consensus 65 f~ppKpIRGG---IP~~F-PQFG~-~g---~l~qHGFaRn~~W~v~~~p~~lp~~~~a--~Vdl~Lk~~~~~~k------ 128 (305)
T KOG1594|consen 65 FKPPKPIRGG---IPICF-PQFGN-FG---SLPQHGFARNRFWEVENNPPPLPSLGKA--TVDLILKSSEDDLK------ 128 (305)
T ss_pred cCCCCcccCC---cceEe-eccCC-CC---cccccccccceeeEeccCCCCCCcCCce--eEEEEecCChhhhh------
Confidence 3444444442 55555 88764 32 456666554 588887776655543332 56655554411111
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCeEEEEEEEccceEEE-----EeCCeEE-EEeccccCCCccceeEEEEccc
Q 005540 331 DSKTASWFKRFIGREQKPEVTWPFPFVEGRLFILTLRAGVEGYHI-----NVGGRHV-TSFPYRTGFTLEDATGLAIKGD 404 (691)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~fPF~~g~~F~lti~~g~egfhv-----~VnG~h~-~sF~yR~~~~l~~v~~l~v~GD 404 (691)
-|||-| .|.++|..+.+..+. +.|++.+ .+|+|++=|...||++++|.|=
T Consensus 129 --------------------iWp~~F----e~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveGL 184 (305)
T KOG1594|consen 129 --------------------IWPHSF----ELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEGL 184 (305)
T ss_pred --------------------hCCcce----EEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeeeEeecccceEEEecc
Confidence 167655 467777777554443 2377766 4899999888899999999995
Q ss_pred cccee
Q 005540 405 VDIHS 409 (691)
Q Consensus 405 v~l~s 409 (691)
-.+..
T Consensus 185 ~tldy 189 (305)
T KOG1594|consen 185 ETLDY 189 (305)
T ss_pred ccccc
Confidence 44443
No 66
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=41.29 E-value=7.4e+02 Score=30.47 Aligned_cols=158 Identities=11% Similarity=-0.018 Sum_probs=83.3
Q ss_pred cEEEEEEEeeCCChhhHHHHHHhhhccCcEEEecccccccchhHHHHHHHHHHhhcC---------CceEEEEecCcccc
Q 005540 477 NVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNV---------TAAYIMKCDDDTFI 547 (691)
Q Consensus 477 ~v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~NLtlKTla~l~w~~~~~---------~akfvmKvDDDtfV 547 (691)
++.+.|++. +.+..+...+++-.+.|.++..+.... ..| +-|.-+ ++|+.+.+ .++.++-.|-|+.|
T Consensus 93 ~~eI~vi~~-~nD~~T~~~~~~l~~~~p~~~~v~~~~-~g~-~gKa~a-LN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v 168 (727)
T PRK11234 93 NYHIFVGTY-PNDPATQADVDAVCARFPNVHKVVCAR-PGP-TSKADC-LNNVLDAITQFERSANFAFAGFILHDAEDVI 168 (727)
T ss_pred CeEEEEEec-CCChhHHHHHHHHHHHCCCcEEEEeCC-CCC-CCHHHH-HHHHHHHHHhhhcccCCcccEEEEEcCCCCC
Confidence 344444433 334444556666667788764332222 112 346543 34443322 34567779999999
Q ss_pred cHHHHHHHHHhcCCCCceEEEeeccCCCcccc---ccccccccCCC----------CC-CCCCCCCCCeeEeCHHHHHHH
Q 005540 548 RVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT---GKWAVTYEEWP----------QE-VYPPYANGPGYVISSDIAKFI 613 (691)
Q Consensus 548 nvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~---sKwyVs~eeyp----------~~-~YPpY~~G~GYVLS~Dva~~I 613 (691)
.++.|- .+........+.-+.... ..+.++ ++-|+. ||. .. .-+-.+.|.|..+|+.+++.+
T Consensus 169 ~pd~L~-~~~~l~~~~~~VQ~p~~p-~~~~~~~~~~~~~~~--EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al 244 (727)
T PRK11234 169 SPMELR-LFNYLVERKDLIQIPVYP-FEREWTHFTSGTYID--EFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTAL 244 (727)
T ss_pred ChhHHH-HHHhhcCCCCeEeecccC-CCccHHHHHHHHHHH--HHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHH
Confidence 999996 444433222332222111 111111 222221 111 00 124467899999998877766
Q ss_pred HHHhcC-CccCCCCCChHHHHHHHHHcCCC
Q 005540 614 VLQHGN-QSLRLFKMEDVSMGMWVEQFNST 642 (691)
Q Consensus 614 v~~~~~-~~l~~f~~EDV~iGi~l~~lgi~ 642 (691)
...... .-..-.--||.-+|.-+...|..
T Consensus 245 ~~~ggg~~~~~~~lTED~dlg~rL~~~G~~ 274 (727)
T PRK11234 245 LEDGDGIAFDVQSLTEDYDIGFRLKEKGMR 274 (727)
T ss_pred HHhcCCCCcCCCcchHHHHHHHHHHHCCCE
Confidence 654211 11123346999999999999976
No 67
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=31.68 E-value=4.7e+02 Score=25.01 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=48.3
Q ss_pred CCceEEEEecCcccccHHHHHHHHHhcCCCCceEEEeeccCCCcccccccc---------ccc----cCCCCCCCCCCCC
Q 005540 533 VTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWA---------VTY----EEWPQEVYPPYAN 599 (691)
Q Consensus 533 ~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~PiR~sKwy---------Vs~----eeyp~~~YPpY~~ 599 (691)
.+.+|++.+|.|+.+.++.|...+..+.....+..|...... +. ..|. ... ..+..-.-+.++.
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKN-PD--DSWITRLYAFAFLVFNRLRPLGRSNLGLSCQLG 156 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeC-Cc--cCHHHHHHHHHHHHHHHHHHHHHHHcCCCeeec
Confidence 368999999999999998888888776544456666554321 11 1110 000 0000112344678
Q ss_pred CCeeEeCHHHHHH
Q 005540 600 GPGYVISSDIAKF 612 (691)
Q Consensus 600 G~GYVLS~Dva~~ 612 (691)
|.++++++++++.
T Consensus 157 G~~~~~rr~~l~~ 169 (183)
T cd06438 157 GTGMCFPWAVLRQ 169 (183)
T ss_pred CchhhhHHHHHHh
Confidence 9999999999988
No 68
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=29.94 E-value=1.6e+02 Score=32.05 Aligned_cols=67 Identities=10% Similarity=0.158 Sum_probs=49.4
Q ss_pred hhHHHHHHhhhccCcEEEecccc--cccchhHHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHH
Q 005540 491 EVNAVLKKEAAFFGDIVILPFMD--RYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIE 557 (691)
Q Consensus 491 ~~~~~L~~Eae~ygDII~~df~D--sY~NLtlKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~ 557 (691)
....+|.+=...+.-++.+++.+ .+..-+.--.++..|+++.|...+++.+|-|+|...|+..+.|+
T Consensus 49 ~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~ 117 (346)
T COG4092 49 VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLS 117 (346)
T ss_pred hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHH
Confidence 33455666666666667777664 34443444556777888889999999999999999999999883
No 69
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=28.90 E-value=8.9e+02 Score=27.37 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=64.3
Q ss_pred HHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhcCC--CCceEEEeeccCCCcc-ccc---ccccccc---CCC----
Q 005540 524 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP--KRSLYMGNLNLLHRPL-RTG---KWAVTYE---EWP---- 590 (691)
Q Consensus 524 a~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~--~~~lY~G~v~~~~~Pi-R~s---KwyVs~e---eyp---- 590 (691)
.+++++.+..+.+|++.+|+|..+..+.|.+.++.... .-....|.+....... +.. .+.+... +|.
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 34566777788999999999999999998888876532 2223345443211110 000 1111110 110
Q ss_pred -------CCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHc
Q 005540 591 -------QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQF 639 (691)
Q Consensus 591 -------~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~l 639 (691)
....+..++|++.++.++++..+--- .. .. -.||..++.-+...
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf--~~--~~-i~ED~~l~~rl~~~ 251 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLY--NS--ET-VGEDTDMTFQIREL 251 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCC--CC--CC-cCccHHHHHHHHHh
Confidence 11123346788889999998875321 11 12 37999998776543
No 70
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=28.20 E-value=56 Score=36.47 Aligned_cols=29 Identities=21% Similarity=0.032 Sum_probs=19.1
Q ss_pred CceEEeCCCCCCCcEEEEEEEcCCCcccc
Q 005540 201 DRLMFLPCGLAAGSSITVVGTPHYAHQEF 229 (691)
Q Consensus 201 ~~~~~lPcGL~~Gs~itV~G~p~~~~~~~ 229 (691)
.++.+-|+-|.--++=-|.-+..+.|...
T Consensus 103 ~~laehpgeLvrT~SPn~lcs~LP~HWRs 131 (475)
T KOG3982|consen 103 EFLAEHPGELVRTSSPNFLCSVLPTHWRS 131 (475)
T ss_pred HHHHhCccceeecCCCceeeecCcchhcc
Confidence 45556677777666666777777777643
No 71
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=25.96 E-value=8.9e+02 Score=26.40 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=63.6
Q ss_pred HHHHhhcCCceEEEEecCcccccHHHHHHHHHhc----CCCCceEEEeeccCC--------Ccccc--cc--ccccccCC
Q 005540 526 CEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI----FPKRSLYMGNLNLLH--------RPLRT--GK--WAVTYEEW 589 (691)
Q Consensus 526 l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~----~~~~~lY~G~v~~~~--------~PiR~--sK--wyVs~eey 589 (691)
++.+.++...+|++.+|.|....++.+...++.. ++...+.+|...... ...|. ++ ..+- ...
T Consensus 154 ~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~~l~-~~~ 232 (333)
T PTZ00260 154 VRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIV-NTI 232 (333)
T ss_pred HHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHHHHH-HHH
Confidence 4445556678999999999999988866665543 233457778754211 11121 11 0000 001
Q ss_pred CCCCCCCCCCCCeeEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCCC---Cccc
Q 005540 590 PQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTM---TVRY 647 (691)
Q Consensus 590 p~~~YPpY~~G~GYVLS~Dva~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~~---pV~y 647 (691)
-...++.. ..+.-++++++++.+... ....-+ .-|+-+-+.+.+.|.+. |+.+
T Consensus 233 ~~~~i~D~-~~Gfk~~~r~~~~~i~~~---~~~~~~-~fd~Ell~~a~~~g~~I~EvPv~~ 288 (333)
T PTZ00260 233 CGTNLKDT-QCGFKLFTRETARIIFPS---LHLERW-AFDIEIVMIAQKLNLPIAEVPVNW 288 (333)
T ss_pred cCCCcccC-CCCeEEEeHHHHHHHhhh---ccccCc-cchHHHHHHHHHcCCCEEEEceee
Confidence 11223222 333458899999998753 111212 23666767777777652 6654
No 72
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=24.33 E-value=2.7e+02 Score=27.45 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=26.8
Q ss_pred HHHHhhcCCceEEEEecCcccccHHHHHHHHHhc
Q 005540 526 CEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI 559 (691)
Q Consensus 526 l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~ 559 (691)
...+.+....+|++.+|+|..+..+.+...+...
T Consensus 76 ~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~ 109 (219)
T cd06913 76 KNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAA 109 (219)
T ss_pred HHHHHHhcCCCEEEEECCCccCChhHHHHHHHHH
Confidence 4456666788999999999999988877766554
No 73
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=20.08 E-value=2.7e+02 Score=29.67 Aligned_cols=169 Identities=15% Similarity=0.136 Sum_probs=80.8
Q ss_pred EEEeCCCCCHHHHHHHHHHhccccccCCCcEEEEEEEeeCCChhhHHHHHHhhhccCcEEEecccccc-cchh-------
Q 005540 448 IGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRY-ELVV------- 519 (691)
Q Consensus 448 I~V~Sap~nf~rR~aIR~TW~~~~~i~~~~v~vrFfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY-~NLt------- 519 (691)
+.|.|-.+..+|+..++++-.... + +...||=+.++..+....+..|.. .+ +...+ ..++
T Consensus 5 ~~vIsL~~s~~R~~~~~~~f~~~~----~-~~f~~~~av~~~~~~~~~~~~~~~-~~------~~~~~~~~ls~gEiGC~ 72 (255)
T COG3306 5 IHVISLKSSQERLEHVAETFEALG----G-LPFQRFDAVNGKSEDEKDLIAELD-AG------HLLYEGRRLSPGEIGCY 72 (255)
T ss_pred eehhhhhhhHHHHHHHHHHHhhcc----C-CCceEeeccCccccCHHHHhcccc-ch------hhhhhccccCchhHHHH
Confidence 456677778888899998886543 1 566777777765222222222211 11 11111 1111
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCcccccHHHHHHHHHhc-CCCCceEEEeeccCCCcccc----ccccccc-cCCCCCC
Q 005540 520 LKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI-FPKRSLYMGNLNLLHRPLRT----GKWAVTY-EEWPQEV 593 (691)
Q Consensus 520 lKTla~l~w~~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~-~~~~~lY~G~v~~~~~PiR~----sKwyVs~-eeyp~~~ 593 (691)
+-.+..++=+.+ -+..|++...||+.+.-+. ...|+.. .....++ |.-+. .+|. .+..+.. ..+-...
T Consensus 73 lSH~~lw~~~~~-~~~~yi~I~EDDV~l~~~f-~~~l~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 146 (255)
T COG3306 73 LSHLKLWKKALE-ENLPYILILEDDVVLGEDF-EEFLEDDLKLPVRFL-GDDID---IHRLETFLSPNPLAFNAVFIGRN 146 (255)
T ss_pred HHHHHHHHHHHh-CCCCeEEEecccccccccH-HHHHHHHHhhhhhcc-chHHH---HHHHHHhcccceeeccccccccc
Confidence 111222221111 2677999999999986443 3333321 1111111 22111 1110 0100000 1111122
Q ss_pred C----CCCCCCCeeEeCHHHHHHHHHHhcCCccC-CCCCChHHHHHHH
Q 005540 594 Y----PPYANGPGYVISSDIAKFIVLQHGNQSLR-LFKMEDVSMGMWV 636 (691)
Q Consensus 594 Y----PpY~~G~GYVLS~Dva~~Iv~~~~~~~l~-~f~~EDV~iGi~l 636 (691)
| ..+.+-+||++|+.+|+.++..... .+ ..+.|+.+.--+.
T Consensus 147 ~~~~~~~~~gt~gYiis~~aAk~fl~~~~~--~~~~~pvD~~~~~~~~ 192 (255)
T COG3306 147 FPLLNSYHLGTAGYIISRKAAKKFLELTES--FKVVLPVDWFMFLEFL 192 (255)
T ss_pred chhhhhcccCccceeecHHHHHHHHHHhhh--cccccChhHHHhhhhc
Confidence 2 2346778999999999999986322 22 3445555444444
Done!