Query 005540
Match_columns 691
No_of_seqs 342 out of 2109
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 18:41:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005540.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2046-2050//hhsearch_pdb/005540hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsu_A Putative fiber protein; 1.0 1 1 250.8 17.7 131 200-413 32-163 (343)
2 2yro_A Galectin-8; GAL-BIND le 1.0 1 1 242.3 16.8 138 200-418 17-154 (155)
3 3ap9_A Galectin-8; beta-sandwi 1.0 1 1 241.4 15.0 136 200-413 17-152 (154)
4 2d6m_A Galectin-9, lectin, gal 1.0 1 1 240.5 17.2 135 200-415 17-151 (159)
5 1x50_A Galectin-4; GAL-BIND le 1.0 1 1 240.1 15.6 137 200-417 27-163 (164)
6 3b9c_A HSPC159; beta sandwich, 1.0 1 1 239.2 14.1 134 200-410 10-143 (144)
7 2zhn_A Galectin-9; beta sandwi 1.0 1 1 238.8 17.5 132 200-412 15-147 (148)
8 3vkl_A Galectin-8; beta-sandwi 1.0 1 1 235.3 17.2 137 200-414 17-153 (291)
9 3vkl_A Galectin-8; beta-sandwi 1.0 1 1 234.6 16.8 131 200-411 159-289 (291)
10 2wsu_A Putative fiber protein; 1.0 1 1 230.8 19.3 154 200-431 186-339 (343)
No 1
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB: 2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A*
Probab=1.00 E-value=1 Score=250.81 Aligned_cols=131 Identities=26% Similarity=0.388 Sum_probs=94.5
Q ss_pred CCCEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 88248807888899689999882899622320011025789742010199994578678999999057990120899999
Q 005540 200 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 279 (691)
Q Consensus 200 ~~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~ 279 (691)
.+|...|||||.+|++|+|.|++..++ .+|.|||+++. + +|+|||||||+.+ +
T Consensus 32 vP~~~~i~~gl~~G~~i~I~G~v~~~a-------------------~rF~INl~~g~-----~-dIalHfnpRf~~~--~ 84 (343)
T 2wsu_A 32 IPFVLPLPDGVPTGASIVLEGTLTPSA-------------------VFFTLDLVTGP-----A-SLALHFNVRLPLE--G 84 (343)
T ss_dssp CSSEEECTTCCCTTCEEEEEEEECTTC-------------------CEEEEEEEETT-----T-EEEEEEEEECCSS--S
T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCC-------------------CEEEEEECCCC-----C-CEEEEEEECCCCC--C
T ss_conf 888876889997998999999979999-------------------88999972599-----6-7799996517767--7
Q ss_pred CCEEEEECCCCC-CCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 797998376699-5232031279999987664453034421000257566546443332100025567898888989989
Q 005540 280 RPVIEHNTCYRM-QWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVE 358 (691)
Q Consensus 280 ~pvIv~Nt~~~~-~WG~eeRc~~~~s~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~ 358 (691)
+++||+||+.+| +||.|||+ +.|||++
T Consensus 85 ~~~IV~NS~~~g~~Wg~EEr~----------------------------------------------------~~~PF~~ 112 (343)
T 2wsu_A 85 EKHIVCNSREGSSNWGEEVRP----------------------------------------------------QEFPFER 112 (343)
T ss_dssp CCEEEEEEEETTTEECCCBCC----------------------------------------------------SCCCCCT
T ss_pred CCEEEEEECCCCCCCCCCEEE----------------------------------------------------CCCCCCC
T ss_conf 986999953288731607585----------------------------------------------------6887789
Q ss_pred CCEEEEEEEECCCEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECC
Q ss_conf 9939999999162379986993889821656777665027797043442034213
Q 005540 359 GRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYAT 413 (691)
Q Consensus 359 g~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDi~v~sv~~~ 413 (691)
|++|+++|.++.++|+|+|||+|+++|+||. +.|+.|.|.||++|++|.+.
T Consensus 113 G~~F~l~I~~~~~~f~V~Vng~~~~~F~hR~----~~I~~l~V~Gdv~l~sV~~~ 163 (343)
T 2wsu_A 113 EKPFVLVIVIQSDTYQITVNGKPLVDFPQRL----QGITRASLSGDLVFTRLTMY 163 (343)
T ss_dssp TCEEEEEEEECSSEEEEEETTEEEEEEECCS----CCCCEEEEEESEEEEEEEEE
T ss_pred CCCEEEEEEECCCEEEEEECCEEEEEEECHH----HCCCEEEEECCEEEEEEEEE
T ss_conf 9818999998689899998998899864735----30129999798899999996
No 2
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=242.31 Aligned_cols=138 Identities=27% Similarity=0.401 Sum_probs=127.3
Q ss_pred CCCEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 88248807888899689999882899622320011025789742010199994578678999999057990120899999
Q 005540 200 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 279 (691)
Q Consensus 200 ~~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~ 279 (691)
.+|...|||||.+|++|+|.|++..+++ +|.|||+++.. ++|+|||||||+++
T Consensus 17 vPf~~~ip~gl~~G~~i~I~G~v~~~~~-------------------rF~Inl~~g~~-----~dialHfnpRf~~~--- 69 (155)
T 2yro_A 17 LPFAARLNTPMGPGRTVVVKGEVNANAK-------------------SFNVDLLAGKS-----KDIALHLNPRLNIK--- 69 (155)
T ss_dssp SSEEEECSSCCCTTCEEEEEEEECTTCC-------------------CEEEEEEETTT-----TEEEEEEECCSSSC---
T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCC-------------------EEEEEEECCCC-----CCEEEEEEEECCCC---
T ss_conf 0776366899866989999999899999-------------------79999704998-----99899997774999---
Q ss_pred CCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79799837669952320312799999876644530344210002575665464433321000255678988889899899
Q 005540 280 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 359 (691)
Q Consensus 280 ~pvIv~Nt~~~~~WG~eeRc~~~~s~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g 359 (691)
+||+||+.+|.||.|||+. ..|||.+|
T Consensus 70 --~IV~Ns~~~g~Wg~EEr~~---------------------------------------------------~~fPF~~G 96 (155)
T 2yro_A 70 --AFVRNSFLQESWGEEERNI---------------------------------------------------TSFPFSPG 96 (155)
T ss_dssp --CCEEEEECSSCBCCCCCCC---------------------------------------------------SCCCCCTT
T ss_pred --EEEEECCCCCEECCCEEEC---------------------------------------------------CCCCCCCC
T ss_conf --9999854499905446317---------------------------------------------------98613589
Q ss_pred CEEEEEEEECCCEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCCCCC
Q ss_conf 93999999916237998699388982165677766502779704344203421357898
Q 005540 360 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPAS 418 (691)
Q Consensus 360 ~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDi~v~sv~~~slP~S 418 (691)
++|+|+|.++.++|+|+|||+|+++|+||.. +++.|+.|.|.||++|++|.+.++|+|
T Consensus 97 ~~F~l~I~~~~~~f~V~VNg~~~~~F~hR~~-pl~~I~~l~I~Gdv~l~~V~~~~~~~~ 154 (155)
T 2yro_A 97 MYFEMIIYCDVREFKVAVNGVHSLEYKHRFK-ELSSIDTLEINGDIHLLEVRSWSGPSS 154 (155)
T ss_dssp SEEEEEEEECSSEEEEEETTEEEEEEECCCS-CGGGCCEEEEEESEEEEEEEEECCCCC
T ss_pred CEEEEEEEECCCEEEEEECCEEEEEECCCCC-CHHHCCEEEEECCEEEEEEEEECCCCC
T ss_conf 8599999995898999999999999159699-978976999969999999999668989
No 3
>3ap9_A Galectin-8; beta-sandwich, carbohydrate/sugar binding, lacto-N fucopentaose III, sugar binding protein; HET: GAL FUC NAG BGC; 1.33A {Homo sapiens} PDB: 3ap4_A 3ap5_A* 3ap6_A* 3ap7_A* 3apb_A 2yv8_A 2yxs_A*
Probab=1.00 E-value=1 Score=241.43 Aligned_cols=136 Identities=26% Similarity=0.382 Sum_probs=124.6
Q ss_pred CCCEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 88248807888899689999882899622320011025789742010199994578678999999057990120899999
Q 005540 200 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 279 (691)
Q Consensus 200 ~~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~ 279 (691)
.+|...|||||.+|++|+|.|++...+ .+|.|||+++..+ .++++|+|||||||++.
T Consensus 17 vPf~~~i~~gl~~G~~i~I~G~v~~~~-------------------~rF~Inl~~g~~~-~~~~dialHfnpRf~~~--- 73 (154)
T 3ap9_A 17 IPFVGTIPDQLDPGTLIVIRGHVPSDA-------------------DRFQVDLQNGSSV-KPRADVAFHFNPRFKRA--- 73 (154)
T ss_dssp SSEEEECCSCCCTTCEEEEEEECCTTC-------------------SBEEEEEEEEEEE-TTEEEEEEEEEEECSTT---
T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCC-------------------CEEEEEEEECCCC-CCCCCEEEEEEEEECCC---
T ss_conf 998877889985399999999989999-------------------9799997408887-88998899997688899---
Q ss_pred CCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79799837669952320312799999876644530344210002575665464433321000255678988889899899
Q 005540 280 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 359 (691)
Q Consensus 280 ~pvIv~Nt~~~~~WG~eeRc~~~~s~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g 359 (691)
++||+||+.+|.||.|||+ .+|||.+|
T Consensus 74 -~~IV~Ns~~~g~Wg~EEr~----------------------------------------------------~~~PF~~G 100 (154)
T 3ap9_A 74 -GCIVCNTLINEKWGREEIT----------------------------------------------------YDTPFKRE 100 (154)
T ss_dssp -CEEEEEEEETTEECCCEEE----------------------------------------------------CCCCCCTT
T ss_pred -CEEEEECCCCCEECCCEEE----------------------------------------------------CCCCCCCC
T ss_conf -9899986499987368897----------------------------------------------------89876459
Q ss_pred CEEEEEEEECCCEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECC
Q ss_conf 939999999162379986993889821656777665027797043442034213
Q 005540 360 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYAT 413 (691)
Q Consensus 360 ~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDi~v~sv~~~ 413 (691)
++|+++|.++.++|+|+|||+|+++|+||. +++.|+.|.|.||++|+||.++
T Consensus 101 ~~F~l~I~~~~~~f~V~vng~~~~~F~hR~--~~~~i~~l~I~Gdv~l~sv~~~ 152 (154)
T 3ap9_A 101 KSFEIVIMVLKDKFQVAVNGKHTLLYGHRI--GPEKIDTLGIYGKVNIHSIGFS 152 (154)
T ss_dssp CEEEEEEEECSSEEEEEETTEEEEEEECSS--CGGGCCEEEEEESCEEEEEEEE
T ss_pred CEEEEEEEECCCEEEEEECCCEEEEECCCC--CHHHCCEEEEECCEEEEEEEEE
T ss_conf 848999998689899997993899978989--9778899999499999999997
No 4
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich, carbohydrate binding protein, sugar binding protein; HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A* 2d6n_A* 2d6p_A* 2d6o_X*
Probab=1.00 E-value=1 Score=240.53 Aligned_cols=135 Identities=21% Similarity=0.295 Sum_probs=123.6
Q ss_pred CCCEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 88248807888899689999882899622320011025789742010199994578678999999057990120899999
Q 005540 200 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 279 (691)
Q Consensus 200 ~~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~ 279 (691)
.+|...|||||.+|++|+|.|++..++ .+|.|||+++.. +++|+|||||||++.
T Consensus 17 vPf~~~i~~gl~~G~~i~I~G~v~~~~-------------------~rF~Inl~~g~~----~~dialHfnpRf~~~--- 70 (159)
T 2d6m_A 17 IPFTGPIQGGLQEGLQVTLQGTTKSFA-------------------QRFVVNFQNSFN----GNDIAFHFNPRFEEG--- 70 (159)
T ss_dssp SSEEEECTTCCCTTCEEEEEEEECSSC-------------------CBEEEEEESSTT----CSCEEEEEEEECCTT---
T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCC-------------------CEEEEEEECCCC----CCCEEEEEEEEECCC---
T ss_conf 898887899985499999999989999-------------------989999704999----998899997787899---
Q ss_pred CCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79799837669952320312799999876644530344210002575665464433321000255678988889899899
Q 005540 280 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 359 (691)
Q Consensus 280 ~pvIv~Nt~~~~~WG~eeRc~~~~s~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g 359 (691)
.+||+||+.+|.||.|||+ ..|||.+|
T Consensus 71 -~~IV~Ns~~~g~Wg~EEr~----------------------------------------------------~~~PF~~G 97 (159)
T 2d6m_A 71 -GYVVCNTKQNGQWGPEERK----------------------------------------------------MQMPFQKG 97 (159)
T ss_dssp -CEEEEEEEETTEECCCEEE----------------------------------------------------CCCCCCTT
T ss_pred -CEEEEECCCCCEECCCEEC----------------------------------------------------CCCCCCCC
T ss_conf -9999985639994755483----------------------------------------------------88876799
Q ss_pred CEEEEEEEECCCEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCC
Q ss_conf 93999999916237998699388982165677766502779704344203421357
Q 005540 360 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNL 415 (691)
Q Consensus 360 ~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDi~v~sv~~~sl 415 (691)
++|+++|.++.++|+|+|||+|+++|+||. +++.|+.|.|.||++|+||.+..-
T Consensus 98 ~~F~l~I~~~~~~f~V~Vng~~~~~F~hR~--p~~~I~~l~i~GDv~l~sV~~~~~ 151 (159)
T 2d6m_A 98 MPFELCFLVQRSEFKVMVNKKFFVQYQHRV--PYHLVDTIAVSGCLKLSFITFQTQ 151 (159)
T ss_dssp CEEEEEEEECSSEEEEEETTEEEEEEECSS--CGGGCCEEEEEESEEEEEEEEEEC
T ss_pred CCEEEEEEEECCEEEEEECCEEEEEECCCC--CHHHCCEEEEECCEEEEEEEEECC
T ss_conf 818999999389999999998999726979--967725999979989999999676
No 5
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=240.09 Aligned_cols=137 Identities=23% Similarity=0.400 Sum_probs=124.9
Q ss_pred CCCEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 88248807888899689999882899622320011025789742010199994578678999999057990120899999
Q 005540 200 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 279 (691)
Q Consensus 200 ~~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~ 279 (691)
.+|...|||||.+|+.|+|.|++..++ .+|.|||+++. +++|+|||||||+++
T Consensus 27 vPf~~~ip~gL~~G~~i~I~G~v~~~~-------------------~rF~INl~~g~-----~~dIalHfnpRf~~~--- 79 (164)
T 1x50_A 27 VPYFGRLQGGLTARRTIIIKGYVPPTG-------------------KSFAINFKVGS-----SGDIALHINPRMGNG--- 79 (164)
T ss_dssp SSEEEECSSCSCTTEEEEEEEECCTTC-------------------CCEEEEEECSS-----SCCCSEEEECCTTTC---
T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCC-------------------CEEEEEEECCC-----CCCEEEEEEEECCCC---
T ss_conf 898866889985399999999989999-------------------98999970499-----899899997774999---
Q ss_pred CCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79799837669952320312799999876644530344210002575665464433321000255678988889899899
Q 005540 280 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 359 (691)
Q Consensus 280 ~pvIv~Nt~~~~~WG~eeRc~~~~s~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g 359 (691)
+||+||+.+|.||.|||+. .+|||.+|
T Consensus 80 --~IV~Ns~~~g~Wg~EEr~~---------------------------------------------------~~~PF~~G 106 (164)
T 1x50_A 80 --TVVRNSLLNGSWGSEEKKI---------------------------------------------------THNPFGPG 106 (164)
T ss_dssp --CCEEECEETTEECCCEECC---------------------------------------------------SCCCCCTT
T ss_pred --EEEEECCCCCEECCCEEEC---------------------------------------------------CCCCCCCC
T ss_conf --9999843699915435307---------------------------------------------------88864689
Q ss_pred CEEEEEEEECCCEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCCCC
Q ss_conf 9399999991623799869938898216567776650277970434420342135789
Q 005540 360 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPA 417 (691)
Q Consensus 360 ~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDi~v~sv~~~slP~ 417 (691)
+.|+|+|.++.++|+|+|||+|+++|+||.. +++.|+.|.|.||++|++|.+.+-+.
T Consensus 107 ~~F~l~I~~~~~~f~V~VNg~~~~~F~hR~~-pl~~I~~l~I~GDv~l~sV~~~~~~~ 163 (164)
T 1x50_A 107 QFFDLSIRCGLDRFKVYANGQHLFDFAHRLS-AFQRVDTLEIQGDVTLSYVQISGPSS 163 (164)
T ss_dssp SEEEEEEEECSSEEEEEESSSEEEEEECCCG-GGGGCCEEEEEESCEEEEEEEECTTC
T ss_pred CEEEEEEEECCCEEEEEECCEEEEEECCCCC-CHHHCCEEEEECCEEEEEEEEECCCC
T ss_conf 8688999995898999989978998608799-97888799996998999999968899
No 6
>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens} PDB: 2jj6_A
Probab=1.00 E-value=1 Score=239.25 Aligned_cols=134 Identities=19% Similarity=0.290 Sum_probs=122.3
Q ss_pred CCCEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 88248807888899689999882899622320011025789742010199994578678999999057990120899999
Q 005540 200 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 279 (691)
Q Consensus 200 ~~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~ 279 (691)
..|...|||||.+|++|+|.|++...+ .+|.|||+++.+. +++++|+|||||||++.
T Consensus 10 ~~~~~~i~~gl~~G~~i~I~G~v~~~~-------------------~rF~INl~~g~~~-~~~~dialHfnpRf~~~--- 66 (144)
T 3b9c_A 10 VPFCGHIKGGMRPGKKVLVMGIVDLNP-------------------ESFAISLTCGDSE-DPPADVAIELKAVFTDR--- 66 (144)
T ss_dssp -CEEEECTTCCCTTCEEEEEEEECSSC-------------------CEEEEEEEEEEEE-TTEEEEEEEEEEETTTT---
T ss_pred EEECCCCCCCCCCCCEEEEEEEECCCC-------------------CEEEEEECCCCCC-CCCCCEEEEEEECCCCC---
T ss_conf 017403789975599999999989999-------------------9899996248877-88999999983006999---
Q ss_pred CCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79799837669952320312799999876644530344210002575665464433321000255678988889899899
Q 005540 280 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 359 (691)
Q Consensus 280 ~pvIv~Nt~~~~~WG~eeRc~~~~s~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g 359 (691)
+||+||+.+|+||.|||+. .+|||.+|
T Consensus 67 --~IV~NS~~~g~Wg~EEr~~---------------------------------------------------~~~PF~~G 93 (144)
T 3b9c_A 67 --QLLRNSCISGERGEEQSAI---------------------------------------------------PYFPFIPD 93 (144)
T ss_dssp --EEEEEEEETTEECCCBCCC---------------------------------------------------SCCCCCTT
T ss_pred --EEEEECCCCCEECCCEEEC---------------------------------------------------CCCCCCCC
T ss_conf --9999875799844677587---------------------------------------------------89962689
Q ss_pred CEEEEEEEECCCEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEE
Q ss_conf 939999999162379986993889821656777665027797043442034
Q 005540 360 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSV 410 (691)
Q Consensus 360 ~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDi~v~sv 410 (691)
++|+++|.++.++|+|+|||+|+++|+||.+ +++.|+.|.|.||++|+||
T Consensus 94 ~~F~l~I~~~~~~f~V~Vng~~~~~F~hR~~-~l~~I~~l~I~GDv~l~~v 143 (144)
T 3b9c_A 94 QPFRVEILCEYPRFRVFVDGHQLFDFYHRIQ-TLSAIDTIKINGDLQITKL 143 (144)
T ss_dssp CEEEEEEEECSSEEEEEETTEEEEEEECSSC-CGGGCCEEEEEESEEEEEE
T ss_pred CCEEEEEEECCCEEEEEECCEEEEEECCCCC-CHHCCCEEEEECCEEEEEE
T ss_conf 8189999985798999979979998548899-8660349999599999985
No 7
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Probab=1.00 E-value=1 Score=238.81 Aligned_cols=132 Identities=23% Similarity=0.314 Sum_probs=120.4
Q ss_pred CCCEEEECCCCCCCCEEEEEEECC-CCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 882488078888996899998828-9962232001102578974201019999457867899999905799012089999
Q 005540 200 GDRLMFLPCGLAAGSSITVVGTPH-YAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWS 278 (691)
Q Consensus 200 ~~~~~~lPcGL~~Gs~ItVvG~p~-~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~ 278 (691)
.+|...|||||.+|++|+|.|++. ..+ .+|.|||+++.. +++|+|||||||+++
T Consensus 15 vP~~~~i~~gl~~G~~i~I~G~~~~~~~-------------------~rF~Inl~~g~~----~~dialHfnpRf~~~-- 69 (148)
T 2zhn_A 15 VPFSGTIQGGLQDGLQITVNGTVLSSSG-------------------TRFAVNFQTGFS----GNDIAFHFNPRFEDG-- 69 (148)
T ss_dssp SSEEEECTTCCCTTCEEEEEEEECSSSC-------------------SBEEEEEESSSS----SSCEEEEEEEECSTT--
T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCC-------------------CEEEEEEEECCC----CCCEEEEEEEEECCC--
T ss_conf 8988878999854999999999899999-------------------989999732999----998999999787899--
Q ss_pred CCCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97979983766995232031279999987664453034421000257566546443332100025567898888989989
Q 005540 279 HRPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVE 358 (691)
Q Consensus 279 ~~pvIv~Nt~~~~~WG~eeRc~~~~s~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~ 358 (691)
++||+||+.+|.||.|||+ .+|||.+
T Consensus 70 --~~IV~Ns~~~g~Wg~EEr~----------------------------------------------------~~~PF~~ 95 (148)
T 2zhn_A 70 --GYVVCNTRQNGSWGPEERK----------------------------------------------------THMPFQK 95 (148)
T ss_dssp --CEEEEEEEETTEECCCEEE----------------------------------------------------SCCCCCT
T ss_pred --CEEEEECCCCCEECCCEEE----------------------------------------------------CCCCCCC
T ss_conf --9999987639995500483----------------------------------------------------7873469
Q ss_pred CCEEEEEEEECCCEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEC
Q ss_conf 993999999916237998699388982165677766502779704344203421
Q 005540 359 GRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYA 412 (691)
Q Consensus 359 g~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDi~v~sv~~ 412 (691)
|++|+++|.++.++|+|+|||+|+++|+||. +++.|+.|.|.||++|+||..
T Consensus 96 G~~F~l~i~~~~~~f~V~vng~~~~~F~hR~--p~~~i~~l~i~Gdv~l~~v~~ 147 (148)
T 2zhn_A 96 GMPFDLCFLVQSSDFKVMVNGILFVQYFHRV--PFHRVDTISVNGSVQLSYISF 147 (148)
T ss_dssp TCEEEEEEEECSSEEEEEETTEEEEEEECSS--CGGGCCEEEEEESEEEEEEEC
T ss_pred CCEEEEEEEECCCEEEEEECCCEEEECCCCC--CHHHCCEEEEECCEEEEEEEE
T ss_conf 9848899999689999998993899825879--966617999979989999998
No 8
>3vkl_A Galectin-8; beta-sandwich, carbohydrate binding, oligosaccharide, sugar protein; HET: GAL BGC; 2.55A {Homo sapiens} PDB: 3naj_A* 3vkm_A* 4fqz_A* 3ojb_A
Probab=1.00 E-value=1 Score=235.33 Aligned_cols=137 Identities=26% Similarity=0.368 Sum_probs=125.3
Q ss_pred CCCEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 88248807888899689999882899622320011025789742010199994578678999999057990120899999
Q 005540 200 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 279 (691)
Q Consensus 200 ~~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~ 279 (691)
.+|+..|||||.+|++|+|.|++..+++ +|.|||+++... .++++++|||||||.++
T Consensus 17 vP~~~~i~~gl~~G~~i~I~G~v~~~a~-------------------rF~Inl~~g~~~-~~~~dialHfnpRf~~~--- 73 (291)
T 3vkl_A 17 IPFVGTIPDQLDPGTLIVIRGHVPSDAD-------------------RFQVDLQNGSSM-KPRADVAFHFNPRFKRA--- 73 (291)
T ss_dssp SSEEEECSSCCCTTCEEEEEEECCTTCC-------------------BEEEEEESSCCB-TTBCCEEEEEEEECSSS---
T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCC-------------------EEEEEEEECCCC-CCCCCEEEEEEEECCCC---
T ss_conf 9976477899866869999999899998-------------------799998828988-99988899997683999---
Q ss_pred CCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79799837669952320312799999876644530344210002575665464433321000255678988889899899
Q 005540 280 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 359 (691)
Q Consensus 280 ~pvIv~Nt~~~~~WG~eeRc~~~~s~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g 359 (691)
++||+||+.+|+||.|||+ ..+||++|
T Consensus 74 -~~IV~Ns~~~g~Wg~EEr~----------------------------------------------------~~~Pf~~G 100 (291)
T 3vkl_A 74 -GCIVCNTLINEKWGREEIT----------------------------------------------------YDTPFKRE 100 (291)
T ss_dssp -CEEEEEEEETTEECCCEEE----------------------------------------------------ESCSCCTT
T ss_pred -CEEEEECCCCCEECCCCCC----------------------------------------------------CCCCCCCC
T ss_conf -9899967569872587202----------------------------------------------------79997899
Q ss_pred CEEEEEEEECCCEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCC
Q ss_conf 9399999991623799869938898216567776650277970434420342135
Q 005540 360 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATN 414 (691)
Q Consensus 360 ~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDi~v~sv~~~s 414 (691)
++|+++|.+..++|+|+|||+|+++|+||. +++.|+.|.|.||++|+||....
T Consensus 101 ~~F~l~I~~~~~~f~V~vng~~~~~F~hR~--p~~~i~~l~v~Gdv~l~sv~~~~ 153 (291)
T 3vkl_A 101 KSFEIVIMVLKDKFQVAVNGKHTLLYGHRI--GPEKIDTLGIYGKVNIHSIGFSF 153 (291)
T ss_dssp CEEEEEEEECSSEEEEEETTEEEEEEECSS--CGGGCCEEEEEESCEEEEEEEEC
T ss_pred CEEEEEEEECCCEEEEEECCEEEEEEECCC--CHHHEEEEEEECCEEEEEEECCC
T ss_conf 859999998378479998996888711028--96685089995888999983135
No 9
>3vkl_A Galectin-8; beta-sandwich, carbohydrate binding, oligosaccharide, sugar protein; HET: GAL BGC; 2.55A {Homo sapiens} PDB: 3naj_A* 3vkm_A* 4fqz_A* 3ojb_A
Probab=1.00 E-value=1 Score=234.56 Aligned_cols=131 Identities=25% Similarity=0.400 Sum_probs=121.8
Q ss_pred CCCEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 88248807888899689999882899622320011025789742010199994578678999999057990120899999
Q 005540 200 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 279 (691)
Q Consensus 200 ~~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~ 279 (691)
.++...||+||.+|+.|+|.|++...++ +|.|||+++ +.++++|||||||+..
T Consensus 159 ~P~~~~i~~gl~pG~~i~I~G~v~~~~~-------------------~F~Inl~~g-----~~~dialHfnpRf~~~--- 211 (291)
T 3vkl_A 159 LPFAARLNTPMGPGRTVVVKGEVNANAK-------------------SFNVDLLAG-----KSKDIALHLNPRLNIK--- 211 (291)
T ss_dssp SSEEEECSSCCCTTCEEEEEEEECTTCC-------------------BEEEEEEET-----TTTEEEEEEEEETTTT---
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCC-------------------EEEEEEECC-----CCCCEEEEEEEECCCC---
T ss_conf 6433238888889979999999889988-------------------699996528-----9998899987445998---
Q ss_pred CCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79799837669952320312799999876644530344210002575665464433321000255678988889899899
Q 005540 280 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 359 (691)
Q Consensus 280 ~pvIv~Nt~~~~~WG~eeRc~~~~s~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g 359 (691)
+|||||+.+|.||.|||+. ++|||.+|
T Consensus 212 --~iVrNs~~~g~Wg~EEr~~---------------------------------------------------~~fPF~~g 238 (291)
T 3vkl_A 212 --AFVRNSFLQESWGEEERNI---------------------------------------------------TSFPFSPG 238 (291)
T ss_dssp --EEEEEEECSSSBCCCBCCC---------------------------------------------------SCCCCCTT
T ss_pred --EEEEECCCCCEECCCEEEC---------------------------------------------------CCCCCCCC
T ss_conf --4998897199806527347---------------------------------------------------99988899
Q ss_pred CEEEEEEEECCCEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEE
Q ss_conf 9399999991623799869938898216567776650277970434420342
Q 005540 360 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVY 411 (691)
Q Consensus 360 ~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDi~v~sv~ 411 (691)
++|+++|.|+.++|+|+|||+|+++|+||.+ +|++|+.|.|.||++|++|.
T Consensus 239 ~~F~l~I~~~~~~f~V~vng~~~~~F~hR~~-~l~~i~~l~I~GDv~l~~V~ 289 (291)
T 3vkl_A 239 MYFEMIIYCDVREFKVAVNGVHSLEYKHRFK-ELSSIDTLEINGDIHLLEVR 289 (291)
T ss_dssp CEEEEEEEECSSEEEEEETTEEEEEEECSSC-CGGGCCEEEEEESEEEEEEE
T ss_pred CCEEEEEEECCCEEEEEECCEEEEEECCCCC-CHHHCCEEEEECCEEEEEEE
T ss_conf 8489999989998999999988998149899-97675699997997999996
No 10
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB: 2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A*
Probab=1.00 E-value=1 Score=230.85 Aligned_cols=154 Identities=25% Similarity=0.356 Sum_probs=139.9
Q ss_pred CCCEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 88248807888899689999882899622320011025789742010199994578678999999057990120899999
Q 005540 200 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 279 (691)
Q Consensus 200 ~~~~~~lPcGL~~Gs~ItVvG~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~ 279 (691)
.+|...||+||.+|+.|+|.|++..+++ +|.|||+++..+ +.++|+|||||||..++
T Consensus 186 ~Pf~~~ip~gl~~G~~i~I~G~v~~~~~-------------------rF~INl~~g~~~--~~~dIalHfnpRf~~~~-- 242 (343)
T 2wsu_A 186 DAYVLNLPTGLTPRTLLTVTGTPTPLAE-------------------FFIVNLVYDLHY--DSKNVALHFNVGFTSDS-- 242 (343)
T ss_dssp CCSEEECTTCCCTTCEEEEEEEECTTCC-------------------EEEEEEESSCCT--TCSCEEEEEEEEESSSS--
T ss_pred CCCEECCCCCCCCCCEEEEEEEECCCCC-------------------EEEEEEECCCCC--CCCCEEEEEEECCCCCC--
T ss_conf 9956407998749968999999689998-------------------899997249988--88988999855268777--
Q ss_pred CCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79799837669952320312799999876644530344210002575665464433321000255678988889899899
Q 005540 280 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 359 (691)
Q Consensus 280 ~pvIv~Nt~~~~~WG~eeRc~~~~s~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~g 359 (691)
+++||+||+.+|.||.|||+ +.|||.+|
T Consensus 243 ~~~IV~NS~~~g~Wg~EEr~----------------------------------------------------~~~PF~~G 270 (343)
T 2wsu_A 243 KGHIACNARMNGTWGSEITV----------------------------------------------------SDFPFQRG 270 (343)
T ss_dssp CEEEEEEEEETTEECCCEEE----------------------------------------------------CCCCCCTT
T ss_pred CCEEEEECCCCCEECCCEEC----------------------------------------------------CCCCCCCC
T ss_conf 98999984269990565774----------------------------------------------------89898899
Q ss_pred CEEEEEEEECCCEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 939999999162379986993889821656777665027797043442034213578989996200234200
Q 005540 360 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMS 431 (691)
Q Consensus 360 ~~F~lti~~g~egfhv~VnG~h~~sF~yR~~~~l~~v~~l~v~GDi~v~sv~~~slP~S~psf~~~~~~~~~ 431 (691)
+.|+|+|.++.++|+|+|||+|+++|+||.. +++.|+.|.|.||++|++|.+. +.++|+|++++++++-
T Consensus 271 ~~F~l~I~~~~~~f~V~VNG~~~~~F~hR~~-pl~~I~~l~I~GDv~l~~V~~~--~~~~p~~s~~~~~~~~ 339 (343)
T 2wsu_A 271 KPFTLQILTREADFQVLVDKQPLTQFQYRLK-ELDQIKYVHMFGHVVQTHLEHQ--VPDTPVFSTAGVSKVY 339 (343)
T ss_dssp CCEEEEEEECSSEEEEEETTEEEEEEECSSC-CGGGCCEEEEEESEEEEEEEEE--CC--------------
T ss_pred CCEEEEEEECCCEEEEEECCEEEEEECCCCC-CHHHCCEEEEECCEEEEEEEEC--CCCCCCCCHHHHHHHC
T ss_conf 9789999988887999979978998058799-9776758999387899999982--5999964521021005
Done!