Query 005541
Match_columns 691
No_of_seqs 166 out of 200
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 18:57:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005541.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2046-2050//hhsearch_pdb/005541hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 1.0 1 1 1018.6 15.8 352 229-654 21-375 (392)
2 3kv5_D JMJC domain-containing 1.0 1 1 102.6 15.4 268 232-657 148-420 (488)
3 4gjz_A Lysine-specific demethy 1.0 1 1 102.1 6.6 217 231-603 10-233 (235)
4 3k2o_A Bifunctional arginine d 1.0 1 1 100.8 12.1 246 230-621 55-306 (336)
5 2yu1_A JMJC domain-containing 1.0 1 1 100.8 18.6 271 234-652 65-345 (451)
6 3kv4_A PHD finger protein 8; e 1.0 1 1 97.0 16.5 267 232-658 113-386 (447)
7 3k3o_A PHF8, PHD finger protei 1.0 1 1 96.5 15.4 268 232-658 29-302 (371)
8 3al5_A HTYW5, JMJC domain-cont 1.0 1 1 94.8 6.9 228 231-610 38-279 (338)
9 3kv9_A JMJC domain-containing 1.0 1 1 93.8 17.0 268 231-657 56-329 (397)
10 3d8c_A Hypoxia-inducible facto 1.0 1 1 93.0 4.4 227 231-607 49-298 (349)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=1018.55 Aligned_cols=352 Identities=28% Similarity=0.470 Sum_probs=312.1
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCHHHHCCCCCCC
Q ss_conf 10088899966239987981244468888887033455654200112212237136872799971312211110123787
Q 005541 229 SEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEG 308 (691)
Q Consensus 229 ~~~l~hFQ~hW~kGePVIV~~Vl~~~s~lsW~P~~mwr~~~e~~~~~~~~e~~~v~aidCl~~~ev~i~i~qFf~Gy~~g 308 (691)
.+|+.|||+||++|||||||||++++++++|+|++|||+|++ ..+++|||++|++++|++++||+||+++
T Consensus 21 ~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd----------~~~~lidC~~~~~~~i~v~~Ff~Gf~~~ 90 (392)
T 2ypd_A 21 SSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGD----------HQADLLNCKDSIISNANVKEFWDGFEEV 90 (392)
T ss_dssp TTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTT----------SCCCCEETTTCCBCSCCHHHHHHTSSBG
T ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCCCCCCHHHHHHHHCC----------CEEEEEECCCCCCCCCCHHHHHHHCCCC
T ss_conf 644799999983799689962223376784278999887167----------4111443799841157689986542464
Q ss_pred CCC---CCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 314---89983026616999960247764106057772699633357898510110139998899999972000345411
Q 005541 309 RVR---EDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYE 385 (691)
Q Consensus 309 r~~---~~g~p~mLKLKDWPps~~Fee~lP~h~~efi~~LP~~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~e 385 (691)
+.+ ++|||+|||||||||+++|+|+||+||+|||++||||||||| +|+||||++||+++++||||||||||||+++
T Consensus 91 ~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p-~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~ 169 (392)
T 2ypd_A 91 SKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNP-EGKFNLASHLPGFFVRPDLGPRLCSAYGVVA 169 (392)
T ss_dssp GGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHST-TCTTCCTTTSCGGGCC---CCEEEEECCSTT
T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCC-CCCCHHHHHCCCCCCCCCCCCCHHHHCCCCH
T ss_conf 457767789801566468997577888737778999970996675089-7410499868787777887750014218612
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23689983200101232000100034466898404674200000001235799876679999898778998888410013
Q 005541 386 ELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEK 465 (691)
Q Consensus 386 elgrGdSvTkLH~DmSDAVNIL~h~~ev~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~ 465 (691)
++|+++|||||||||||||||||||++++....... .+.+ + .++++++++ .
T Consensus 170 ~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~~~~~-~~~l-~-------------~~~~~~~d~----------~---- 220 (392)
T 2ypd_A 170 AKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGILSK-AGIL-K-------------KFEEEDLDD----------I---- 220 (392)
T ss_dssp TTCTTCCSEEEEECSSEEEEEEEEEECCBCTTCCCH-HHHH-H-------------HHHTSCCCH----------H----
T ss_pred HCCCCCCCCEEEEEHHHHHHHHHEECCCCCCCCCHH-HHHH-H-------------HHHHCCCCH----------H----
T ss_conf 105677734000025655555401202476542013-5665-4-------------311202207----------7----
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 45650245430376556521110001124688888989999516897359995799999999886608999998885357
Q 005541 466 SATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTH 545 (691)
Q Consensus 466 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~h 545 (691)
.. .+. .+..+.+||+||||||||++|||+||++|++||+.+. ..+.|
T Consensus 221 ----~~--------------------~r~-----~~~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~~~~----~~~~d 267 (392)
T 2ypd_A 221 ----LR--------------------KRL-----KDSSEIPGALWHIYAGKDVDKIREFLQKISKEQGLEV----LPEHD 267 (392)
T ss_dssp ----HH--------------------HHH-----TCTTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC----------CC
T ss_pred ----HH--------------------HHC-----CCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCC----CCCCC
T ss_conf ----76--------------------531-----5789999845654577669999999999988649876----67778
Q ss_pred CCCCCCEEECHHHHHHHHHHHCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 77776222099889987777396006887413864784689920114555541110234597688999999999823997
Q 005541 546 PLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPN 625 (691)
Q Consensus 546 PIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~ 625 (691)
|||||+||||.+||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||+||
T Consensus 268 Pihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~l~- 346 (392)
T 2ypd_A 268 PIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLLK- 346 (392)
T ss_dssp HHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC-----
T ss_pred CCCCCCEEECHHHHHHHHHHCCCEEEEEEECCCCEEEECCCCHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCC-
T ss_conf 6768887866999999987519704899973787799669978887520221457652268421999999789986251-
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40343413324357999899999999985
Q 005541 626 DHEAKLQVLEVGKISLYAASSAIKEVQKL 654 (691)
Q Consensus 626 ~H~~K~d~Levkkm~lya~~~avke~~~l 654 (691)
+|++|+||||||+|++||+..||+++++.
T Consensus 347 ~~~~~edkLqvk~m~~~av~~av~~l~~~ 375 (392)
T 2ypd_A 347 EEINYDDKLQVKNILYHAVKEMVRALKIH 375 (392)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10036889999999999999999998863
No 2
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=1.00 E-value=1 Score=102.64 Aligned_cols=268 Identities=16% Similarity=0.251 Sum_probs=160.7
Q ss_pred HHHHHHHHHCCCCEEEECCCCC---CCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCHHHHCCCCCCC
Q ss_conf 8889996623998798124446---8888887033455654200112212237136872799971312211110123787
Q 005541 232 IGNFRKHWVKGEPVIVKQVCDS---SSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEG 308 (691)
Q Consensus 232 l~hFQ~hW~kGePVIV~~Vl~~---~s~lsW~P~~mwr~~~e~~~~~~~~e~~~v~aidCl~~~ev~i~i~qFf~Gy~~g 308 (691)
...|++++ -..||||.+.-.. .....|+-..+-.-+ ..+..|.++||.+...+++++++|.+=|...
T Consensus 148 ~~~~~~~~-~~~Pvli~~~~~lg~~~P~~~~t~~~v~~~~---------G~d~~V~V~Dv~~Q~~~~m~l~~yi~y~~~~ 217 (488)
T 3kv5_D 148 QRYLEKHG-FDVPIMVPKLDDLGLRLPSPTFSVMDVERYV---------GGDKVIDVIDVARQADSKMTLHNYVKYFMNP 217 (488)
T ss_dssp HHHHHHHC-SCSCEEECSCTTTCCBCCCTTCCHHHHHHHH---------CTTCEEEEEETTTTEEEEEEHHHHHHHHHSS
T ss_pred HHHHHHCC-CCCCEEEECCCCCCCCCCCCCCCHHHHHHHH---------CCCCEEEEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf 99997537-8877798357776776898878699999972---------8994564353376646165599999998423
Q ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 31489983026616999960247764106057772699633357898510110139998--8999999720003454112
Q 005541 309 RVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHY--SLQNDVGPKIYMSYGTYEE 386 (691)
Q Consensus 309 r~~~~g~p~mLKLKDWPps~~Fee~lP~h~~efi~~LP~~EYt~pr~G~LNLAskLP~~--~lkPDLGPK~YIAYG~~ee 386 (691)
.+. ..+-+-++.-+.. .+......|+|.. ....+|. ..|.. .-+|++. .|+-
T Consensus 218 --~r~---~~~nv~slefs~~----------~L~~~~~~P~~~~-~~d~~~~--~wp~~~~~~rP~~~--r~~~------ 271 (488)
T 3kv5_D 218 --NRP---KVLNVISLEFSDT----------KMSELVEVPDIAK-KLSWVEN--YWPDDSVFPKPFVQ--KYCL------ 271 (488)
T ss_dssp --SCS---SCEEEEEEECTTS----------GGGGGCBCCHHHH-HHCHHHH--HCCTTCSSCCCCCS--CEEE------
T ss_pred --CCC---CCCCCCCCCCCCC----------HHHCCCCCCHHHH-HHCHHHH--CCCCCCCCCCCCCC--EEEE------
T ss_conf --876---6301364200652----------2320577970352-2033441--27631134675510--3899------
Q ss_pred CCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 36899832001012320001000344668984046742000000012357998766799998987789988884100134
Q 005541 387 LDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKS 466 (691)
Q Consensus 387 lgrGdSvTkLH~DmSDAVNIL~h~~ev~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 466 (691)
.|...|.|.+|.|....- +..++
T Consensus 272 mG~~gS~T~~H~D~~~t~-~w~~v-------------------------------------------------------- 294 (488)
T 3kv5_D 272 MGVQDSYTDFHIDFGGTS-VWYHV-------------------------------------------------------- 294 (488)
T ss_dssp EECTTCEEEEECCGGGCE-EEEEE--------------------------------------------------------
T ss_pred ECCCCCCCCEEECCCCCC-EEEEC--------------------------------------------------------
T ss_conf 828998898678899982-65541--------------------------------------------------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 56502454303765565211100011246888889899995168973599957999999998866089999988853577
Q 005541 467 ATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHP 546 (691)
Q Consensus 467 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hP 546 (691)
-.|--.|-+|++.+.+ +.-| +.+. .. .+
T Consensus 295 -------------------------------------v~G~K~w~L~PPt~~~-~~~y--~~~~---~~---------~~ 322 (488)
T 3kv5_D 295 -------------------------------------LWGEKIFYLIKPTDEN-LARY--ESWS---SS---------VT 322 (488)
T ss_dssp -------------------------------------EEEEEEEEEECCCHHH-HHHH--HHHH---TC---------SS
T ss_pred -------------------------------------CCEEEEEEEECCCCCC-CCCC--CCCC---CC---------CC
T ss_conf -------------------------------------6705899996986246-3435--5445---57---------76
Q ss_pred CCCCCEEECHHHHHHHHHHHCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 77762220998899877773960068874138647846899201145555411102345976889999999998239974
Q 005541 547 LYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPND 626 (691)
Q Consensus 547 IHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~ 626 (691)
. ...||-+ ...+++.++|.+||++|||+|+.|||.||..||-|...|++..|+...++..+==+.+..
T Consensus 323 ~-~~~~~~~----------~~~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~e~~~~~- 390 (488)
T 3kv5_D 323 Q-SEVFFGD----------KVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKT- 390 (488)
T ss_dssp G-GGSCGGG----------SSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHTTC-
T ss_pred C-CHHHHCC----------CCCCEEEEEECCCCEEEECCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCC-
T ss_conf 2-1334311----------355338986178877876799648862788848976653775679999999999985088-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0343413324357999899999999985069
Q 005541 627 HEAKLQVLEVGKISLYAASSAIKEVQKLVLD 657 (691)
Q Consensus 627 H~~K~d~Levkkm~lya~~~avke~~~l~~~ 657 (691)
..|-.-..-.+|+||.+..-++.++.+.-+
T Consensus 391 -~~~~~~p~f~~~~w~~~~~~l~~~~~~~~~ 420 (488)
T 3kv5_D 391 -PDLFKFPFFEAICWFVAKNLLETLKELRED 420 (488)
T ss_dssp -CTTSSCTTHHHHHHHHHHHHHHHHHHHHSS
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -633647368999999999999999998753
No 3
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=1.00 E-value=1 Score=102.14 Aligned_cols=217 Identities=21% Similarity=0.248 Sum_probs=114.4
Q ss_pred CHHHH-HHHHHCCCCEEEECCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECC-----CCCEEECCHHHHCC
Q ss_conf 08889-996623998798124446888-888703345565420011221223713687279-----99713122111101
Q 005541 231 GIGNF-RKHWVKGEPVIVKQVCDSSSM-SIWDPKDIWRGIRETADEKTKDENRIVKAIDCL-----DWSEVDIELGEFIK 303 (691)
Q Consensus 231 ~l~hF-Q~hW~kGePVIV~~Vl~~~s~-lsW~P~~mwr~~~e~~~~~~~~e~~~v~aidCl-----~~~ev~i~i~qFf~ 303 (691)
..+.| +++|.+++|||++|+.+.-.. ..|+++++-..+++ ..|.+-.+. ++....+.+++|..
T Consensus 10 S~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~~~yL~~~~g~----------~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (235)
T 4gjz_A 10 SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGC----------RTVPVEVGSRYTDEEWSQTLMTVNEFIS 79 (235)
T ss_dssp CHHHHHHHTTTTTCCEEEESSSTTSHHHHHCSHHHHHHHHTT----------SEEEEEEC-------CEEEEEEHHHHHH
T ss_pred CHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCC----------CEEEEEECCCCCCCCCCEEECCHHHHHH
T ss_conf 999999987427986899288768831122799999987399----------7687872576557765356556999999
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23787314899830266169999602477641060577726996333578985101101399988999999720003454
Q 005541 304 GYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGT 383 (691)
Q Consensus 304 Gy~~gr~~~~g~p~mLKLKDWPps~~Fee~lP~h~~efi~~LP~~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~ 383 (691)
.+..... ...+-+.++. +....+++..-+.+|.|.....+. ..+..+-+||
T Consensus 80 ~~~~~~~-----~~~~y~~~~~--------~~~~~~~l~~d~~~p~~~~~~~~~------------~~~~~~~~wi---- 130 (235)
T 4gjz_A 80 KYIVNEP-----RDVGYLAQHQ--------LFDQIPELKQDISIPDYCSLGDGE------------EEEITINAWF---- 130 (235)
T ss_dssp HHTSSCC-----SSCEEEEEEC--------HHHHCHHHHTTCCCCGGGGGSSSC------------GGGCEEEEEE----
T ss_pred HHHHCCC-----CCCCEEEHHH--------HHHHHHHHHHHHCCCCCCCCCCCC------------CCCCCEEEEE----
T ss_conf 9862677-----6653110223--------544118888754378511245555------------5766437998----
Q ss_pred CCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11236899832001012320001000344668984046742000000012357998766799998987789988884100
Q 005541 384 YEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHV 463 (691)
Q Consensus 384 ~eelgrGdSvTkLH~DmSDAVNIL~h~~ev~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~ 463 (691)
|.+.|+|.||.|..+..++++.-
T Consensus 131 ----G~~gs~t~~H~D~~~n~~~qv~G----------------------------------------------------- 153 (235)
T 4gjz_A 131 ----GPQGTISPLHQDPQQNFLVQVMG----------------------------------------------------- 153 (235)
T ss_dssp ----ECTTCEEEEECCSSEEEEEEEES-----------------------------------------------------
T ss_pred ----ECCCCCCEEEECCCCCEEEEEEE-----------------------------------------------------
T ss_conf ----47997743621566566999952-----------------------------------------------------
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13456502454303765565211100011246888889899995168973599957999999998866089999988853
Q 005541 464 EKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFV 543 (691)
Q Consensus 464 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v 543 (691)
--.|-+|.+.+.+.|.. +...... ....++ .
T Consensus 154 -------------------------------------------~K~w~L~pP~~~~~l~~----~~~~~~~-~~s~vd-~ 184 (235)
T 4gjz_A 154 -------------------------------------------RKYIRLYSPQESGALYP----HDTHLLH-NTSQVD-V 184 (235)
T ss_dssp -------------------------------------------CEEEEEECGGGGGGSCB----CSSTTTT-TBBSSC-T
T ss_pred -------------------------------------------EEEEEECCCCCCCCCCC----CCCCCCC-CCCCCC-C
T ss_conf -------------------------------------------68368728532554366----7655557-631224-5
Q ss_pred CCCCCCCCEEECHHHHHHHHHHHCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEECC
Q ss_conf 577777622209988998777739600688741386478468992011455554111023
Q 005541 544 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLD 603 (691)
Q Consensus 544 ~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlD 603 (691)
.+|-.+ +.-+--.+.++.++|.+||++|||+|..|||+||..||.|..=
T Consensus 185 ~~~d~~-----------~~p~~~~~~~~~~~l~pGD~LyiP~gW~H~V~~l~~sisvn~w 233 (235)
T 4gjz_A 185 ENPDLE-----------KFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFW 233 (235)
T ss_dssp TSCCTT-----------TCGGGGGCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEE
T ss_pred CCCCHH-----------HCCCCCCCCCEEEEECCCCEEEECCCCCEEEEECCCEEEEEEE
T ss_conf 674444-----------4811027975799999998999599992889989998999875
No 4
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=1.00 E-value=1 Score=100.81 Aligned_cols=246 Identities=16% Similarity=0.205 Sum_probs=142.9
Q ss_pred CCHHHHHHHHH-CCCCEEEECCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCHHHHCCCCCC
Q ss_conf 00888999662-3998798124446888-888703345565420011221223713687279997131221111012378
Q 005541 230 EGIGNFRKHWV-KGEPVIVKQVCDSSSM-SIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSE 307 (691)
Q Consensus 230 ~~l~hFQ~hW~-kGePVIV~~Vl~~~s~-lsW~P~~mwr~~~e~~~~~~~~e~~~v~aidCl~~~ev~i~i~qFf~Gy~~ 307 (691)
=....|.+.+. .+.|||++|+.+.-.. ..|.+.++-..+++ ..|.+-.-.++..+.+.+++|..-+..
T Consensus 55 lS~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~yL~~~~G~----------~~V~v~~~~~~~~~~m~~~~fl~~~~~ 124 (336)
T 3k2o_A 55 LSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRN----------QKFKCGEDNDGYSVKMKMKYYIEYMES 124 (336)
T ss_dssp CCHHHHHHHTTTTTCCEEEESTTTTCTHHHHCSHHHHHHHSTT----------CEEEEEECTTSCEEEEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC----------CEEEEEECCCCCEEEECHHHHHHHHHH
T ss_conf 9999999984366988898488678846766259999998199----------248998637874344219999999970
Q ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 73148998302661699996024776410605777269963335789851011013999889999997200034541123
Q 005541 308 GRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEEL 387 (691)
Q Consensus 308 gr~~~~g~p~mLKLKDWPps~~Fee~lP~h~~efi~~LP~~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~eel 387 (691)
. .++.| |=|.||. |.+. ..++++..-..+|+|. + ...+|++ +. ..+|| -+++=.|
T Consensus 125 ~---~~~~~--lYL~d~~----~~e~--~~~p~L~~dy~~P~~f-~-~d~~~~~---~~-~~~p~---~~~~~~G----- 179 (336)
T 3k2o_A 125 T---RDDSP--LYIFDSS----YGEH--PKRRKLLEDYKVPKFF-T-DDLFQYA---GE-KRRPP---YRWFVMG----- 179 (336)
T ss_dssp C---CCSSC--CCEEESC----GGGS--TTGGGGGGGCCCCGGG-C-CCGGGGG---CT-TTSCC---CEEEEEE-----
T ss_pred C---CCCCC--CEEECCC----CCCC--CCCHHHHHHCCCCCCC-C-CCHHHHC---CC-CCCCC---CEEEEEC-----
T ss_conf 4---77787--1575154----4432--1235579765788443-3-1055426---53-34877---2079977-----
Q ss_pred CCCCCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68998320010123200010003446689840467420000000123579987667999989877899888841001345
Q 005541 388 DRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSA 467 (691)
Q Consensus 388 grGdSvTkLH~DmSDAVNIL~h~~ev~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 467 (691)
.+.|.|.||.|....-|+++.+.
T Consensus 180 -~~gs~t~~H~D~~~~~~~~~~v~-------------------------------------------------------- 202 (336)
T 3k2o_A 180 -PPRSGTGIHIDPLGTSAWNALVQ-------------------------------------------------------- 202 (336)
T ss_dssp -CTTCEEEEECCGGGCEEEEEEEE--------------------------------------------------------
T ss_pred -CCCCCCCCCCCCCCCCEEEEEEE--------------------------------------------------------
T ss_conf -88766774448876641469974--------------------------------------------------------
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCC-CCCCCCCCCCCCC
Q ss_conf 650245430376556521110001124688888989999516897359995799999999886608-9999988853577
Q 005541 468 TDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFG-RPDGVTNDFVTHP 546 (691)
Q Consensus 468 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~-~~~~~~~~~v~hP 546 (691)
|.-.|-+|.+.+.+.|-. +....+ .... . .++
T Consensus 203 --------------------------------------G~K~~~L~pP~~~~~ly~----~~~~~~~~~~~---~-~~~- 235 (336)
T 3k2o_A 203 --------------------------------------GHKRWCLFPTSTPRELIK----VTRDEGGNQQD---E-AIT- 235 (336)
T ss_dssp --------------------------------------SCEEEEEECTTSCHHHHC----CCHHHHGGGTT---C-HHH-
T ss_pred --------------------------------------EEEEEEEECCCCCHHCCC----CCCCCCCCCCC---C-HHH-
T ss_conf --------------------------------------107999958985231056----76001587753---1-145-
Q ss_pred CCCCCEEECHHHHHHHH-HHH--CCEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 77762220998899877-773--9600688741386478468992011455554111023459768899999999982
Q 005541 547 LYGEVVYLNGDHKRKLK-EEF--GVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIR 621 (691)
Q Consensus 547 IHDQ~fYLt~~hk~kLk-EEy--GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR 621 (691)
|+++..- ++. ++| ...++.++|.+||++|||+|..|||+|+..||.|...|+++.|+...+++|-+-|
T Consensus 236 -----w~~~~~P--~~~~~~~p~~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~~~ 306 (336)
T 3k2o_A 236 -----WFNVIYP--RTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGR 306 (336)
T ss_dssp -----HHHHTGG--GGGSTTSCGGGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHHHC
T ss_pred -----HHHHHCC--CHHHHCCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf -----5543383--0121023345750799988998898589971777638986999754278201999999987408
No 5
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=1.00 E-value=1 Score=100.77 Aligned_cols=271 Identities=11% Similarity=0.098 Sum_probs=151.0
Q ss_pred HHHHHHHCCCCEEEECCCCCCC----CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCHHHHCCCCCCCC
Q ss_conf 8999662399879812444688----888870334556542001122122371368727999713122111101237873
Q 005541 234 NFRKHWVKGEPVIVKQVCDSSS----MSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGR 309 (691)
Q Consensus 234 hFQ~hW~kGePVIV~~Vl~~~s----~lsW~P~~mwr~~~e~~~~~~~~e~~~v~aidCl~~~ev~i~i~qFf~Gy~~gr 309 (691)
.|.+.=....|||++|+ +... ...|+..++-..++ ++..|.++||.+..-+++++++|.+-+....
T Consensus 65 EF~~~~~~nkPVVIt~~-~~Wpa~~P~~kWt~dyL~~~~G---------~d~~V~V~D~~~q~~~~M~l~eyidy~~~~~ 134 (451)
T 2yu1_A 65 EYIQRGGLRDPLIFKNS-DGLGIKMPDPDFTVNDVKMCVG---------SRRMVDVMDVNTQKGIEMTMAQWTRYYETPE 134 (451)
T ss_dssp HHHHHHCSCSCEEESSC-TTTTCBCCCTTCCHHHHHHHTC---------TTCCCCCEETTSSCCTTCCHHHHHHHHTSCT
T ss_pred HHHHHCCCCCCEEECCC-CCCCCCCCCCCCCHHHHHHHCC---------CCCEEEEEECCCCCCEEEEHHHHHHHHHHCC
T ss_conf 99985389975898157-6788727767899999999739---------9716755774778544535999999985141
Q ss_pred CCCCCCCEEEEECCCCCCCHH-HHH--HHCCCHHH--HHCCCCCCCCCCCC-CCCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 148998302661699996024-776--41060577--72699633357898-5101101399988999999720003454
Q 005541 310 VREDGWPEMLKLKDWPSPSAS-EEF--LLYHKPEF--ISKLPLLEYIHSRL-GFLNVAAKLPHYSLQNDVGPKIYMSYGT 383 (691)
Q Consensus 310 ~~~~g~p~mLKLKDWPps~~F-ee~--lP~h~~ef--i~~LP~~EYt~pr~-G~LNLAskLP~~~lkPDLGPK~YIAYG~ 383 (691)
.. ..+ ++-+..|.=+..| +.. .|.-..++ +.. .++++...+. -.+|... ..-.||.. .|+-
T Consensus 135 d~--r~~-LY~v~sLeF~~~~l~~~~~~P~l~~d~Dwv~~-~~p~~l~~~~~d~f~~lg----e~~rP~~~--r~~~--- 201 (451)
T 2yu1_A 135 EE--REK-LYNVISLEFSHTRLENMVQRPSTVDFIDWVDN-MWPRHLKESQTESTNAIL----EMQYPKVQ--KYCL--- 201 (451)
T ss_dssp TT--CCS-CEEEEEECCTTSTTGGGCBCCHHHHHHCHHHH-HSCGGGCC---------------CCSCCCC--CEEE---
T ss_pred CC--CCC-HHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCHHHHHHHHHHHHHCC----CCCCCCHH--EEEE---
T ss_conf 34--530-00001101366400102467346654310210-274033210124543025----44588610--1799---
Q ss_pred CCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11236899832001012320001000344668984046742000000012357998766799998987789988884100
Q 005541 384 YEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHV 463 (691)
Q Consensus 384 ~eelgrGdSvTkLH~DmSDAVNIL~h~~ev~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~ 463 (691)
.|...|.|.+|.|....-+....+
T Consensus 202 ---mGp~gS~T~~H~D~~~ts~w~avi----------------------------------------------------- 225 (451)
T 2yu1_A 202 ---MSVRGCYTDFHVDFGGTSVWYHIH----------------------------------------------------- 225 (451)
T ss_dssp ---EECTTCEEEEECCGGGCEEEEEEE-----------------------------------------------------
T ss_pred ---ECCCCCCCCEEECCCCCCHHHHEE-----------------------------------------------------
T ss_conf ---805888799688999840423100-----------------------------------------------------
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13456502454303765565211100011246888889899995168973599957999999998866089999988853
Q 005541 464 EKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFV 543 (691)
Q Consensus 464 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v 543 (691)
.|.-.|=+|++.+.+- .-|-. +.. . + .
T Consensus 226 -----------------------------------------~GrK~w~L~PP~~~~~-~~y~~--~~~---s---~-~-- 252 (451)
T 2yu1_A 226 -----------------------------------------QGGKVFWLIPPTAHNL-ELYEN--WLL---S---G-S-- 252 (451)
T ss_dssp -----------------------------------------ESCEEEEEECCCHHHH-HHHHH--HHH---T---T-C--
T ss_pred -----------------------------------------CCEEEEEEECCCCCCC-CCCCC--CCC---C---C-C--
T ss_conf -----------------------------------------4438999969976553-32344--444---6---5-4--
Q ss_pred CCCCCCCCEEECHHHHHHHHHHHCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 57777762220998899877773960068874138647846899201145555411102345976889999999998239
Q 005541 544 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCL 623 (691)
Q Consensus 544 ~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~L 623 (691)
.+..|| .++..+++.+++..||++|||+|+.|||.||..||-|...|++.-|+...++.++-=+++
T Consensus 253 ----q~~~~~----------p~~~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~~E~~~ 318 (451)
T 2yu1_A 253 ----QGDIFL----------GDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRT 318 (451)
T ss_dssp ----CSSSCH----------HHHSSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHHHHHHT
T ss_pred ----CHHHHH----------CCCCCCCEEEEECCCCEEEECCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf ----015450----------001355469998887279867996489961787289964408852589999999998863
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97403434133243579998999999999
Q 005541 624 PNDHEAKLQVLEVGKISLYAASSAIKEVQ 652 (691)
Q Consensus 624 p~~H~~K~d~Levkkm~lya~~~avke~~ 652 (691)
... .|-.--.-..|+||++...++.+.
T Consensus 319 ~v~--~~~~~p~f~~~~w~~~~~~~~~~~ 345 (451)
T 2yu1_A 319 RVP--NKFRYPFYYEMCWYVLERYVYCIT 345 (451)
T ss_dssp TCC--TTSSCTTHHHHHHHHHHHHHHHHH
T ss_pred CCC--CCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 798--445382389999999999999974
No 6
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=96.98 Aligned_cols=267 Identities=14% Similarity=0.239 Sum_probs=159.6
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCC-----CCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCHHHHCCCCC
Q ss_conf 888999662399879812444688888-----870334556542001122122371368727999713122111101237
Q 005541 232 IGNFRKHWVKGEPVIVKQVCDSSSMSI-----WDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYS 306 (691)
Q Consensus 232 l~hFQ~hW~kGePVIV~~Vl~~~s~ls-----W~P~~mwr~~~e~~~~~~~~e~~~v~aidCl~~~ev~i~i~qFf~Gy~ 306 (691)
...|+++ +-+.||||.+.- ..|+- |+...+- +.. ..+..|.+||+.+...+.+++++|.+=|.
T Consensus 113 ~~~~~~~-~~~~Pvli~~~~--glgm~~P~~~~tv~~v~----~~~-----G~d~~V~ViDv~~Q~~~~M~l~~y~dy~~ 180 (447)
T 3kv4_A 113 VEFLEEN-SFSVPILVLKKD--GLGMTLPSPSFTVRDVE----HYV-----GSDKEIDVIDVTRQADCKMKLGDFVKYYY 180 (447)
T ss_dssp HHHHHHT-TSCSCEEESSCT--TSCCBCCCTTCCHHHHH----HHH-----CTTCEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred HHHHHHC-CCCCCEEEECCC--CCCCCCCCCCCCHHHHH----HHC-----CCCCEECCEECCCCCCCCCCHHHHHHHHH
T ss_conf 9999864-799777981576--55775898658899999----874-----99846744554767662053999999971
Q ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf 8731489983026616999960247764106057772699633357898510110139998--89999997200034541
Q 005541 307 EGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHY--SLQNDVGPKIYMSYGTY 384 (691)
Q Consensus 307 ~gr~~~~g~p~mLKLKDWPps~~Fee~lP~h~~efi~~LP~~EYt~pr~G~LNLAskLP~~--~lkPDLGPK~YIAYG~~ 384 (691)
... ....|=+.||--+.. .+....-.|+|.. ..-.+|. ..|.. .-+||. ..|.-
T Consensus 181 ~~~-----r~~~lnv~d~efs~~----------~L~~~~~~P~~~~-~~D~~~~--lw~~~~~~~rP~v--~r~~~---- 236 (447)
T 3kv4_A 181 SGK-----REKVLNVISLEFSDT----------RLSNLVETPKIVR-KLSWVEN--LWPEECVFERPNV--QKYCL---- 236 (447)
T ss_dssp SSC-----CSSCEEEEEEECTTS----------GGGGGCBCCHHHH-HHCHHHH--HCCSCTTSCCCCC--SCEEE----
T ss_pred CCC-----CCCCEEECCCCCCCC----------HHHHCCCCCCEEC-CCCHHHH--CCCCHHHCCCCCC--EEEEE----
T ss_conf 368-----777544214100552----------2440467884312-0005653--0650121159870--36999----
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12368998320010123200010003446689840467420000000123579987667999989877899888841001
Q 005541 385 EELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVE 464 (691)
Q Consensus 385 eelgrGdSvTkLH~DmSDAVNIL~h~~ev~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ 464 (691)
.|...|.|.+|.|.... ++..++
T Consensus 237 --mG~~gS~T~~HiD~~~t-s~w~~v------------------------------------------------------ 259 (447)
T 3kv4_A 237 --MSVRDSYTDFHIDFGGT-SVWYHV------------------------------------------------------ 259 (447)
T ss_dssp --EECTTEEEEEECCGGGC-EEEEEE------------------------------------------------------
T ss_pred --EECCCCCCCEEECCCCC-CEEEEE------------------------------------------------------
T ss_conf --81899889866899998-345898------------------------------------------------------
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 34565024543037655652111000112468888898999951689735999579999999988660899999888535
Q 005541 465 KSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVT 544 (691)
Q Consensus 465 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~ 544 (691)
-.|--.|-+|++.+.+ +..|-. +. ..
T Consensus 260 ---------------------------------------i~GrK~w~L~PPt~~n-l~~~~~--~~---~s--------- 285 (447)
T 3kv4_A 260 ---------------------------------------LKGEKIFYLIRPTNAN-LTLFEC--WS---SS--------- 285 (447)
T ss_dssp ---------------------------------------EESEEEEEEECCCHHH-HHHHHH--HH---TC---------
T ss_pred ---------------------------------------EEEEEEEEEECCCCCC-CCCHHH--CC---CC---------
T ss_conf ---------------------------------------6017999996987245-442011--13---57---------
Q ss_pred CCCCCCCEEECHHHHHHHHHHHCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 77777622209988998777739600688741386478468992011455554111023459768899999999982399
Q 005541 545 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP 624 (691)
Q Consensus 545 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp 624 (691)
+..+..||-+ ...+++.++|..||++|||+|+.|||.|+.+||-|..+|++..|+...++..+-=+.+.
T Consensus 286 -~~~~~~~~~~----------~~~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~ 354 (447)
T 3kv4_A 286 -SNQNEMFFGD----------QVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLS 354 (447)
T ss_dssp -SSGGGSCGGG----------GSSCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTT
T ss_pred -CCHHHHHCCC----------CCCCEEEEEECCCCEEECCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf -5302334055----------45643999988986786389976888637887998154346347999999999998607
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7403434133243579998999999999850699
Q 005541 625 NDHEAKLQVLEVGKISLYAASSAIKEVQKLVLDP 658 (691)
Q Consensus 625 ~~H~~K~d~Levkkm~lya~~~avke~~~l~~~p 658 (691)
. ..|-.--.-.+|+||++...++.++.+.-+.
T Consensus 355 ~--~~~~~~p~f~~~~w~~~~~~~~~~~~~~~~~ 386 (447)
T 3kv4_A 355 T--ADLFRFPNFETICWYVGKHILDIFRGLRENR 386 (447)
T ss_dssp C--CGGGSCTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9--7423266879999999999999988787547
No 7
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=1.00 E-value=1 Score=96.49 Aligned_cols=268 Identities=15% Similarity=0.253 Sum_probs=157.7
Q ss_pred HHHHHHHHHCCCCEEEECCCC---CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCHHHHCCCCCCC
Q ss_conf 888999662399879812444---68888887033455654200112212237136872799971312211110123787
Q 005541 232 IGNFRKHWVKGEPVIVKQVCD---SSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEG 308 (691)
Q Consensus 232 l~hFQ~hW~kGePVIV~~Vl~---~~s~lsW~P~~mwr~~~e~~~~~~~~e~~~v~aidCl~~~ev~i~i~qFf~Gy~~g 308 (691)
...|+.+ +-..||||.+.-. ......|+-..+- +.. ..+..|.++||.+...+.+++++|.+=|...
T Consensus 29 ~~y~~~~-~~~~Pvli~~~~glg~~~P~~~~tv~~v~----~~v-----G~d~~V~ViDv~~Q~~~~M~l~~y~dY~~~~ 98 (371)
T 3k3o_A 29 VEFLEEN-SFSVPILVLKKDGLGMTLPSPSFTVRDVE----HYV-----GSDKEIDVIDVTRQADCKMKLGDFVKYYYSG 98 (371)
T ss_dssp HHHHHHH-TTCSCEEESSCTTSCCBCCCTTCCHHHHH----HHH-----CC-CEEEEEETTTTEEEEEEHHHHHHHHTCT
T ss_pred HHHHHHC-CCCCCEEEECCCCCCCCCCCCCCCHHHHH----HHC-----CCCCEEEEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf 9999864-89988798167656786898879999999----874-----9984573144376777424499999997226
Q ss_pred CCCCCCCCEEEEECCCCCCCH-HHHHHHCCCHHHHHCCCC-CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 314899830266169999602-477641060577726996-333578985101101399988999999720003454112
Q 005541 309 RVREDGWPEMLKLKDWPSPSA-SEEFLLYHKPEFISKLPL-LEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEE 386 (691)
Q Consensus 309 r~~~~g~p~mLKLKDWPps~~-Fee~lP~h~~efi~~LP~-~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~ee 386 (691)
. ....|=+.||--|.. ..+ -...+++.+-+-+ ..|- |..+. .-+||. ..|.-.
T Consensus 99 ~-----re~~lnv~d~efs~~~L~~--~~~~P~~~~d~d~~~~~w-p~~~~----------~~rP~~--~r~l~m----- 153 (371)
T 3k3o_A 99 K-----REKVLNVISLEFSDTRLSN--LVETPKIVRKLSWVENLW-PEECV----------FERPNV--QKYCLM----- 153 (371)
T ss_dssp T-----CCSCEEEEEEECTTSGGGG--TCBCCHHHHHHCHHHHHS-CSSCS----------SCCCCC--SCEEEE-----
T ss_pred C-----CCCCEEEECHHCCCHHHHC--CCCCCCHHHHHHHHHHCC-CHHHH----------CCCCCC--EEEEEE-----
T ss_conf 8-----8875365131006503204--645872241200666408-70121----------049970--369998-----
Q ss_pred CCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 36899832001012320001000344668984046742000000012357998766799998987789988884100134
Q 005541 387 LDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKS 466 (691)
Q Consensus 387 lgrGdSvTkLH~DmSDAVNIL~h~~ev~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 466 (691)
|...|.|.+|.|.... ++..++
T Consensus 154 -Gp~gS~T~~HiD~~gt-s~w~~v-------------------------------------------------------- 175 (371)
T 3k3o_A 154 -SVRDSYTDFHIDFGGT-SVWYHV-------------------------------------------------------- 175 (371)
T ss_dssp -ECTTEEEEEECCGGGC-EEEEEE--------------------------------------------------------
T ss_pred -CCCCCCCCEEECCCCC-CEEEEE--------------------------------------------------------
T ss_conf -0899889867889998-434788--------------------------------------------------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 56502454303765565211100011246888889899995168973599957999999998866089999988853577
Q 005541 467 ATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHP 546 (691)
Q Consensus 467 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hP 546 (691)
-.|.-.|=+|++.+.+ +.-|- .+. .. +
T Consensus 176 -------------------------------------v~GrK~w~L~PPt~~n-l~~y~--~~~---~s----------~ 202 (371)
T 3k3o_A 176 -------------------------------------LKGEKIFYLIRPTNAN-LTLFE--CWS---SS----------S 202 (371)
T ss_dssp -------------------------------------EEEEEEEEEECCCHHH-HHHHH--HHH---TS----------T
T ss_pred -------------------------------------EEEEEEEEEECCCCCC-CCCCC--CCC---CC----------C
T ss_conf -------------------------------------6457999997977024-45454--455---67----------7
Q ss_pred CCCCCEEECHHHHHHHHHHHCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHH-HHHCCCC
Q ss_conf 777622209988998777739600688741386478468992011455554111023459768899999999-9823997
Q 005541 547 LYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAE-EIRCLPN 625 (691)
Q Consensus 547 IHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLte-EfR~Lp~ 625 (691)
-.+..||-+ ...+++.++|..||++|||+|+.|||.|+.+||-|+.+|++..|+...++..+ |-| +..
T Consensus 203 ~~~e~~~~~----------~~~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~-~~~ 271 (371)
T 3k3o_A 203 NQNEMFFGD----------QVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKR-LST 271 (371)
T ss_dssp TGGGSCGGG----------TSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHH-HC-
T ss_pred CCCHHHCCC----------CCCCEEEEEECCCCEEEECCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHH-CCC
T ss_conf 600344066----------567449999888857870799759875688869988754663428999999879975-399
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 403434133243579998999999999850699
Q 005541 626 DHEAKLQVLEVGKISLYAASSAIKEVQKLVLDP 658 (691)
Q Consensus 626 ~H~~K~d~Levkkm~lya~~~avke~~~l~~~p 658 (691)
..|-.--.-.+|+||++...++.++.+.-+.
T Consensus 272 --~~~f~fp~F~~~~w~~~~~~~~~~~~~~~~~ 302 (371)
T 3k3o_A 272 --ADLFRFPNFETICWYVGKHILDIFRGLRENR 302 (371)
T ss_dssp -----CCCTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf --8544266679889999999999999888658
No 8
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=1.00 E-value=1 Score=94.80 Aligned_cols=228 Identities=14% Similarity=0.175 Sum_probs=124.6
Q ss_pred CHHHHHH-HHHCCCCEEEECCCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEC---------CCCCEEECCHH
Q ss_conf 0888999-662399879812444688-888870334556542001122122371368727---------99971312211
Q 005541 231 GIGNFRK-HWVKGEPVIVKQVCDSSS-MSIWDPKDIWRGIRETADEKTKDENRIVKAIDC---------LDWSEVDIELG 299 (691)
Q Consensus 231 ~l~hFQ~-hW~kGePVIV~~Vl~~~s-~lsW~P~~mwr~~~e~~~~~~~~e~~~v~aidC---------l~~~ev~i~i~ 299 (691)
....|.+ +|.++.|||++| ...-. ...|+++++-..+++ ..|.+-.+ .+|....+++.
T Consensus 38 S~~eF~~~y~~~~kPvVi~g-~~~wpa~~~Ws~dyL~~~~g~----------~~V~v~~~~~~~~~~~~~~~~~~~~~f~ 106 (338)
T 3al5_A 38 SREQFMQHLYPQRKPLVLEG-IDLGPCTSKWTVDYLSQVGGK----------KEVKIHVAAVAQMDFISKNFVYRTLPFD 106 (338)
T ss_dssp CHHHHHHHTGGGCCCEEEES-CCCCTHHHHCCHHHHHHHHCS----------CEEEEEC----CCCC-CCCCCEEEEEHH
T ss_pred CHHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCHHHHHHHHCC----------CEEEEEECCCCCCCCCCCCCEEEEEEHH
T ss_conf 99999998644897199958-988820134899999986199----------2699997678776632356316875899
Q ss_pred HHCCCCCCCCCCC--CCCCEEEEECCCCCCCH-HHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 1101237873148--99830266169999602-47764106057772699633357898510110139998899999972
Q 005541 300 EFIKGYSEGRVRE--DGWPEMLKLKDWPSPSA-SEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPK 376 (691)
Q Consensus 300 qFf~Gy~~gr~~~--~g~p~mLKLKDWPps~~-Fee~lP~h~~efi~~LP~~EYt~pr~G~LNLAskLP~~~lkPDLGPK 376 (691)
+|.+-+....... ......+=|++|+.... ....|..+++++...+.+|.|.. .+.... .-
T Consensus 107 efl~~~~~~~~~~~l~~~~~~~Yl~~~~~~~~~~~~~l~~~~p~L~~d~~~P~~~~-~d~~~~---------------s~ 170 (338)
T 3al5_A 107 QLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFPLLKGDIKFPEFFK-EEQFFS---------------SV 170 (338)
T ss_dssp HHHHHHHC-CCSSCSSCTTCCCEEECCCSSTTTCCCCHHHHCHHHHTTCCCCCCSC-GGGEEE---------------EE
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCHHHHHHCCCCCCCC-CCCCCC---------------CE
T ss_conf 99999874246654457775430100354420001317677877897657874124-445544---------------02
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00034541123689983200101232000100034466898404674200000001235799876679999898778998
Q 005541 377 IYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGH 456 (691)
Q Consensus 377 ~YIAYG~~eelgrGdSvTkLH~DmSDAVNIL~h~~ev~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 456 (691)
+|| |.+.+.|.+|.|..|..++++.
T Consensus 171 l~~--------g~~g~~~~~H~D~~~n~~~qv~----------------------------------------------- 195 (338)
T 3al5_A 171 FRI--------SSPGLQLWTHYDVMDNLLIQVT----------------------------------------------- 195 (338)
T ss_dssp EEE--------ECTTCEEEEECCSSEEEEEECS-----------------------------------------------
T ss_pred EEE--------CCCCCCCCCEECCCCCEEEEEE-----------------------------------------------
T ss_conf 687--------7998875665878103899999-----------------------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 88841001345650245430376556521110001124688888989999516897359995799999999886608999
Q 005541 457 DVNNEHVEKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPD 536 (691)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~ 536 (691)
|--.|-+|.+.+.+.|- . . +..
T Consensus 196 -------------------------------------------------G~K~w~L~pP~~~~~ly--~--~----~~~- 217 (338)
T 3al5_A 196 -------------------------------------------------GKKRVVLFSPRDAQYLY--L--K----GTK- 217 (338)
T ss_dssp -------------------------------------------------SCEEEEEECGGGGGGGT--E--E----TTE-
T ss_pred -------------------------------------------------EEEEEEEECCCCCCCCC--C--C----CCC-
T ss_conf -------------------------------------------------77899997965444436--4--7----887-
Q ss_pred CCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCH
Q ss_conf 99888535777776222099889987777396006887413864784689920114555541110234597688
Q 005541 537 GVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESV 610 (691)
Q Consensus 537 ~~~~~~v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 610 (691)
....+ +.+|-.. .| -++. .+.++.+++.+||++|||+|..|||+|+..||.|..-|.++..-
T Consensus 218 ~~~~d-~~~~d~~--~~------p~~~---~~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~~~ 279 (338)
T 3al5_A 218 SEVLN-IDNPDLA--KY------PLFS---KARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPSE 279 (338)
T ss_dssp ESCCC-SSSCCTT--TC------TTGG---GCCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSCGG
T ss_pred CCCCC-CCCCCHH--HC------CCCC---CCCCEEEEECCCCEEEECCCCEEEEEECCCEEEEEEEECCCCCC
T ss_conf 64456-8886533--29------1313---68778999889888997899828876679879999870588622
No 9
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=1.00 E-value=1 Score=93.85 Aligned_cols=268 Identities=19% Similarity=0.290 Sum_probs=159.1
Q ss_pred CHHHHHHHHHCCCCEEEECCCCC---CCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCHHHHCCCCCC
Q ss_conf 08889996623998798124446---888888703345565420011221223713687279997131221111012378
Q 005541 231 GIGNFRKHWVKGEPVIVKQVCDS---SSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSE 307 (691)
Q Consensus 231 ~l~hFQ~hW~kGePVIV~~Vl~~---~s~lsW~P~~mwr~~~e~~~~~~~~e~~~v~aidCl~~~ev~i~i~qFf~Gy~~ 307 (691)
....|++++ -..||||.+.-.. .....|+-..+-.-+ ..+..|.++||.+...+++++++|.+=|..
T Consensus 56 t~~y~~~~~-~~~Pvli~~~~glg~~~P~~~~tv~~v~~~v---------G~d~~V~ViDv~~Q~~~~M~l~~yv~Y~~~ 125 (397)
T 3kv9_A 56 TQRYLEKHG-FDVPIMVPKLDDLGLRLPSPTFSVMDVERYV---------GGDKVIDVIDVARQADSKMTLHNYVKYFMN 125 (397)
T ss_dssp CHHHHHHHC-SCSCEEESSCTTSCCBCCCTTCCHHHHHHHH---------TTTSEEEEEETTTTEEEEEEHHHHHHHHHC
T ss_pred HHHHHHHCC-CCCCEEEECCCCCCCCCCCCCCCHHHHHHHH---------CCCCEEEEEECCCCCCCCCCHHHHHHHHHC
T ss_conf 599997548-9876798167545675898888899999982---------888467411147665745429999999720
Q ss_pred CCCCCCCCCEEEEECCCCCCCH-HHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 7314899830266169999602-477641060577726996333578985101101399988--9999997200034541
Q 005541 308 GRVREDGWPEMLKLKDWPSPSA-SEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYS--LQNDVGPKIYMSYGTY 384 (691)
Q Consensus 308 gr~~~~g~p~mLKLKDWPps~~-Fee~lP~h~~efi~~LP~~EYt~pr~G~LNLAskLP~~~--lkPDLGPK~YIAYG~~ 384 (691)
.. ....|-+-||--+.. ..+ ..+.+++.+-+- .+|. ..|... -+|+. +.|+-.|
T Consensus 126 ~~-----r~~~lnvislefs~~~L~~--~~~~P~~v~d~D----------wv~~--~wp~~~~~~rP~v--~r~l~mG-- 182 (397)
T 3kv9_A 126 PN-----RPKVLNVISLEFSDTKMSE--LVEVPDIAKKLS----------WVEN--YWPDDSVFPKPFV--QKYCLMG-- 182 (397)
T ss_dssp SS-----CSSCEEEEEEECTTSGGGG--GCBCCHHHHHHC----------HHHH--HCCTTCSSCCCCC--SCEEEEE--
T ss_pred CC-----CCCCCEECCHHHCCCHHCC--CCCCCCEEECCC----------HHHH--CCCCHHCCCCCCC--EEEEEEC--
T ss_conf 48-----8750200546225511035--767971320011----------6550--2871112578661--2599981--
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12368998320010123200010003446689840467420000000123579987667999989877899888841001
Q 005541 385 EELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVE 464 (691)
Q Consensus 385 eelgrGdSvTkLH~DmSDAVNIL~h~~ev~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ 464 (691)
...|.|.+|.|....- +..++
T Consensus 183 ----p~gS~T~~HiD~~gts-~w~~v------------------------------------------------------ 203 (397)
T 3kv9_A 183 ----VQDSYTDFHIDFGGTS-VWYHV------------------------------------------------------ 203 (397)
T ss_dssp ----CTTCEEEEECCGGGCE-EEEEE------------------------------------------------------
T ss_pred ----CCCCCCCEEECCCCCC-EEEEE------------------------------------------------------
T ss_conf ----8998898778899986-02451------------------------------------------------------
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 34565024543037655652111000112468888898999951689735999579999999988660899999888535
Q 005541 465 KSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVT 544 (691)
Q Consensus 465 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~ 544 (691)
-.|--.|-+|++.+.+ +.-| +.+. .. .
T Consensus 204 ---------------------------------------v~GrK~w~L~PPt~~n-l~ly--~~~~---~s---~----- 230 (397)
T 3kv9_A 204 ---------------------------------------LWGEKIFYLIKPTDEN-LARY--ESWS---SS---V----- 230 (397)
T ss_dssp ---------------------------------------EEEEEEEEEECCCHHH-HHHH--HHHH---TS---G-----
T ss_pred ---------------------------------------CCCEEEEEEECCCCCC-CCCC--CCCC---CC---C-----
T ss_conf ---------------------------------------4705999996976134-1100--0025---57---7-----
Q ss_pred CCCCCCCEEECHHHHHHHHHHHCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 77777622209988998777739600688741386478468992011455554111023459768899999999982399
Q 005541 545 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP 624 (691)
Q Consensus 545 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp 624 (691)
+. ...||-+ ...+++.++|.+||++|||+|+.|+|.|+..||-|..+|+++.|+...++..+-=+.+.
T Consensus 231 -~~-~e~~~~~----------~~~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~k 298 (397)
T 3kv9_A 231 -TQ-SEVFFGD----------KVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLK 298 (397)
T ss_dssp -GG-GGSCGGG----------GSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHT
T ss_pred -CC-CHHHHCC----------CCCCEEEEEECCCCEEEECCCCEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf -72-0434124----------45743999978988899679984770288685897871357010899999998997618
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 740343413324357999899999999985069
Q 005541 625 NDHEAKLQVLEVGKISLYAASSAIKEVQKLVLD 657 (691)
Q Consensus 625 ~~H~~K~d~Levkkm~lya~~~avke~~~l~~~ 657 (691)
. ..|-+-..-.+|++|.+..-++.++++.-+
T Consensus 299 ~--~~~~~fp~F~~~~w~~a~~~l~~~~~~~~~ 329 (397)
T 3kv9_A 299 T--PDLFKFPFFEAICWFVAKNLLETLKELRED 329 (397)
T ss_dssp C--GGGGGSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8--855767068999999999999999988865
No 10
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=1.00 E-value=1 Score=92.95 Aligned_cols=227 Identities=13% Similarity=0.185 Sum_probs=118.9
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEC----------------CCCC--
Q ss_conf 0888999662399879812444688888870334556542001122122371368727----------------9997--
Q 005541 231 GIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDC----------------LDWS-- 292 (691)
Q Consensus 231 ~l~hFQ~hW~kGePVIV~~Vl~~~s~lsW~P~~mwr~~~e~~~~~~~~e~~~v~aidC----------------l~~~-- 292 (691)
... |+++-.+++|||++|+...-....|++.++-..+++ ..|.+-.+ ..+.
T Consensus 49 s~~-~~~y~~~~~PVVi~g~~~~wpA~kWt~eyL~~~~G~----------~~V~V~~~~~~~~~y~d~~~~~~~~~F~~~ 117 (349)
T 3d8c_A 49 DPR-AEELIENEEPVVLTDTNLVYPALKWDLEYLQENIGN----------GDFSVYSASTHKFLYYDEKKMANFQNFKPR 117 (349)
T ss_dssp CHH-HHHHHHTTCCEEESCCCTTGGGGGCCHHHHHHHSCS----------SCEEEEEESSSBCCCCCGGGTTSCTTCCCS
T ss_pred CHH-HHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHCC----------CEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 864-998862896389948987766122999999986299----------849999778875112321133454333565
Q ss_pred --EEECCHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf --131221111012378731489983026616999960247764106057772699633357898510110139998899
Q 005541 293 --EVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQ 370 (691)
Q Consensus 293 --ev~i~i~qFf~Gy~~gr~~~~g~p~mLKLKDWPps~~Fee~lP~h~~efi~~LP~~EYt~pr~G~LNLAskLP~~~lk 370 (691)
.+.+++++|++-+.......... .+=|.+|.....+.+ -..||.. +| .+|... +.... ...
T Consensus 118 ~~~~~m~~~efl~~~~~~~~~~~~~--~~YL~~~~~~~~~~~----l~~D~~~-~~-~~~~~~------~~~~~---~~~ 180 (349)
T 3d8c_A 118 SNREEMKFHEFVEKLQDIQQRGGEE--RLYLQQTLNDTVGRK----IVMDFLG-FN-WNWINK------QQGKR---GWG 180 (349)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTCCC--EEEEEEECCTTSCHH----HHHHHHT-SC-HHHHHH------HHHHT---TCC
T ss_pred CEEEEEEHHHHHHHHHHHCCCCCCC--CEEEECCCCCCCCHH----HHHHHHC-CC-HHHHHH------HHHCC---CCC
T ss_conf 4057627999999998630169977--732142665412414----5666521-44-544112------32202---457
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997200034541123689983200101232000100034466898404674200000001235799876679999898
Q 005541 371 NDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPD 450 (691)
Q Consensus 371 PDLGPK~YIAYG~~eelgrGdSvTkLH~DmSDAVNIL~h~~ev~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~g~~~~ 450 (691)
|+.-.-+| .|.+.|+|.||.|..++.++++.
T Consensus 181 ~~~~~~l~--------iG~~gs~t~~H~D~~~n~~~qv~----------------------------------------- 211 (349)
T 3d8c_A 181 QLTSNLLL--------IGMEGNVTPAHYGEQQNFFAQIK----------------------------------------- 211 (349)
T ss_dssp CEEECEEE--------EECTTCEEEEECCSEEEEEEEEE-----------------------------------------
T ss_pred CCCCCEEE--------EECCCCCCCCEECCHHCEEEEEE-----------------------------------------
T ss_conf 55331699--------97999886604887230789874-----------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 77899888841001345650245430376556521110001124688888989999516897359995799999999886
Q 005541 451 LSLGGHDVNNEHVEKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWT 530 (691)
Q Consensus 451 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~ 530 (691)
|--.|-+|.+.+.+.|..+
T Consensus 212 -------------------------------------------------------G~K~~~L~pP~~~~~ly~~------ 230 (349)
T 3d8c_A 212 -------------------------------------------------------GYKRCILFPPDQFECLYPY------ 230 (349)
T ss_dssp -------------------------------------------------------SCEEEEEECGGGHHHHCBB------
T ss_pred -------------------------------------------------------CEEEEEEECCCHHHHHCCC------
T ss_conf -------------------------------------------------------2079999685232443036------
Q ss_pred HCCCCC--CCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCEEEEEEEECCCEEEECCCCCCCCCCCC-CCCEEECCCCCC
Q ss_conf 608999--99888535777776222099889987777396006887413864784689920114555-541110234597
Q 005541 531 DFGRPD--GVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ-STVQLGLDFLFP 607 (691)
Q Consensus 531 Ef~~~~--~~~~~~v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVSP 607 (691)
...++. .+.++ +.+|.. ..| -.-..+.++.+++.+||++|||+|..|||+|+. .++.|++.|..+
T Consensus 231 ~~~~~~~~~s~vd-~~~~d~--~~~---------p~~~~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~~ 298 (349)
T 3d8c_A 231 PVHHPCDRQSQVD-FDNPDY--ERF---------PNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYK 298 (349)
T ss_dssp CTTSTTBTBBCSC-TTSCCT--TTC---------GGGGGCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEE
T ss_pred CCCCCCCCCCCCC-CCCCCH--HHC---------CCCCCCCCEEEEECCCCEEEECCCCCEEEEECCCCCCEEEEEEECC
T ss_conf 5668778753046-788533--338---------3413687189999998789988998088898688984899998808
Done!