BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005542
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 189/635 (29%), Positives = 273/635 (42%), Gaps = 92/635 (14%)
Query: 22 SFEVKAITAN-------IPAVTSEGIYPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSS 74
S EV ++AN + V S+G G+L+HL + N G + S
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDVS------------ 194
Query: 75 IFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWAL 134
VNL F+ +S NNFS + L++L +S LS + S+ L L
Sbjct: 195 --RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLL 249
Query: 135 GLSACN-ISEFPDI-LKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRN-FLT 191
+S+ + P + LK+ L +L L+EN+ G IP ++ TL LDLS N F
Sbjct: 250 NISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYG 305
Query: 192 SIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSN- 250
++ P+ L L + P T K L L LS N G LP SL+N
Sbjct: 306 AVP--PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 251 CVNLQVLDVGNNNLSGPI-PE-CLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVG 308
+L LD+ +NN SGPI P C L L ++NN +G IP L N + L L +
Sbjct: 364 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 423
Query: 309 NNSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSL 367
N LSG IP LG+ S L L + +N G +PQ L +L L+ N L G +P L
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 368 VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPI----GDTKTRVPFPKL 423
NC +L I + NN++ P W+ L L +L L +N F G I GD ++ +
Sbjct: 484 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI----- 538
Query: 424 RIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMK----GN 479
+DL+ N F G +P A M + I N++ Y Y ++ + + GN
Sbjct: 539 -WLDLNTNLFNGTIP--------AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 480 DIQMERI-------LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNL-------- 524
++ + I L+T +++S + G S S+ L++S+N L
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 525 ----------------TGGIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXX 568
+G IP + +L L LDLSSNKL GRIP
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 569 XXXXEGPIPGGPQFNTFGIDSYSGNVGLCGFPLSK 603
GPIP QF TF + N GLCG+PL +
Sbjct: 710 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 139/468 (29%), Positives = 209/468 (44%), Gaps = 68/468 (14%)
Query: 148 LKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFL----TSIDHLPWKNLEF 203
K L LDLS N + G + + L L++S N L L +LE
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 152
Query: 204 LTLDSNLLQGSLPNLPPHMTYAKGC-NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNN 262
L L +N + G+ N+ + GC L +L +SGN + G + +S CVNL+ LDV +N
Sbjct: 153 LDLSANSISGA--NVV-GWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN 207
Query: 263 NLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN 322
N S IP LG+ + L LD+ N LSG + T L L++ +N GPIP L
Sbjct: 208 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPL 265
Query: 323 STLEVLDMRMNKFSGSLPQTFGKSC-VLVSLKLNGNRLEGPLPP---------------- 365
+L+ L + NKF+G +P +C L L L+GN G +PP
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 366 ---------SLVNCRHLEVIDVGNNQINETFPHWLDVL-PELQVLTLRSNRFCGPIGDTK 415
+L+ R L+V+D+ N+ + P L L L L L SN F GPI
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 416 TRVPFPKLRIIDLSYNQFTGVLP---------------IWYLNG-----FKAMMRRDDNS 455
+ P L+ + L N FTG +P YL+G ++ + D
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 456 IEVNYMRS---LNYSYYESI-SLTMKGNDIQME-----RILTTFATIDLSSNRFQGEISE 506
+ +N + Y +++ +L + ND+ E T I LS+NR GEI +
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 507 VLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPT 554
+G+L +L L +S+N+ +G IP+ L + L LDL++N G IP
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 152/347 (43%), Gaps = 48/347 (13%)
Query: 9 DVCDDTSNSQPAKSFEVKAITANIPAVTSEGIYPGQLRHLDLGNNHFVGKIPASLD---- 64
++C + N+ + T IP S +L L L N+ G IP+SL
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNC---SELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 65 --------NQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISL 116
N L G IP + + L + L FN+ +G + + NL ++ LSN L
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRL 499
Query: 117 SVSTKLTVNSSFPNLWALGLSACNIS-EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDI 175
+ + NL L LS + S P L L WLDL+ N G IP+ M+
Sbjct: 500 TGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 176 GVHTLFRLDLSRNFLTSIDHLPWKN-------------LEFLTLDSNLLQGSLPNLPPHM 222
++ NF+ ++ KN LEF + S L P ++
Sbjct: 559 SGK------IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 223 T-----------YAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPEC 271
T + ++ +L +S N L G +P + + L +L++G+N++SG IP+
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Query: 272 LGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPE 318
+G+ L+ LD+ +N L G IP+ + T L+ +D+ NN+LSGPIPE
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 189/635 (29%), Positives = 273/635 (42%), Gaps = 92/635 (14%)
Query: 22 SFEVKAITAN-------IPAVTSEGIYPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSS 74
S EV ++AN + V S+G G+L+HL + N G + S
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDVS------------ 197
Query: 75 IFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWAL 134
VNL F+ +S NNFS + L++L +S LS + S+ L L
Sbjct: 198 --RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLL 252
Query: 135 GLSACN-ISEFPDI-LKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRN-FLT 191
+S+ + P + LK+ L +L L+EN+ G IP ++ TL LDLS N F
Sbjct: 253 NISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYG 308
Query: 192 SIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSN- 250
++ P+ L L + P T K L L LS N G LP SL+N
Sbjct: 309 AVP--PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 251 CVNLQVLDVGNNNLSGPI-PE-CLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVG 308
+L LD+ +NN SGPI P C L L ++NN +G IP L N + L L +
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 309 NNSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSL 367
N LSG IP LG+ S L L + +N G +PQ L +L L+ N L G +P L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 368 VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPI----GDTKTRVPFPKL 423
NC +L I + NN++ P W+ L L +L L +N F G I GD ++ +
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI----- 541
Query: 424 RIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMK----GN 479
+DL+ N F G +P A M + I N++ Y Y ++ + + GN
Sbjct: 542 -WLDLNTNLFNGTIP--------AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 480 DIQMERI-------LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNL-------- 524
++ + I L+T +++S + G S S+ L++S+N L
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 525 ----------------TGGIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXX 568
+G IP + +L L LDLSSNKL GRIP
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 569 XXXXEGPIPGGPQFNTFGIDSYSGNVGLCGFPLSK 603
GPIP QF TF + N GLCG+PL +
Sbjct: 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 139/468 (29%), Positives = 209/468 (44%), Gaps = 68/468 (14%)
Query: 148 LKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFL----TSIDHLPWKNLEF 203
K L LDLS N + G + + L L++S N L L +LE
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 204 LTLDSNLLQGSLPNLPPHMTYAKGC-NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNN 262
L L +N + G+ N+ + GC L +L +SGN + G + +S CVNL+ LDV +N
Sbjct: 156 LDLSANSISGA--NVV-GWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN 210
Query: 263 NLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN 322
N S IP LG+ + L LD+ N LSG + T L L++ +N GPIP L
Sbjct: 211 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPL 268
Query: 323 STLEVLDMRMNKFSGSLPQTFGKSC-VLVSLKLNGNRLEGPLPP---------------- 365
+L+ L + NKF+G +P +C L L L+GN G +PP
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 366 ---------SLVNCRHLEVIDVGNNQINETFPHWLDVL-PELQVLTLRSNRFCGPIGDTK 415
+L+ R L+V+D+ N+ + P L L L L L SN F GPI
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 416 TRVPFPKLRIIDLSYNQFTGVLP---------------IWYLNG-----FKAMMRRDDNS 455
+ P L+ + L N FTG +P YL+G ++ + D
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 456 IEVNYMRS---LNYSYYESI-SLTMKGNDIQME-----RILTTFATIDLSSNRFQGEISE 506
+ +N + Y +++ +L + ND+ E T I LS+NR GEI +
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 507 VLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPT 554
+G+L +L L +S+N+ +G IP+ L + L LDL++N G IP
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 119/258 (46%), Gaps = 29/258 (11%)
Query: 233 LRLSGNHLEGP--LPPSLSNCVNLQVLDVGN-NNLSGPIPECLGNSTRLSFLDVRNNNLS 289
L LSG +L P +P SL+N L L +G NNL GPIP + T+L +L + + N+S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 290 GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGK-SC 347
G IP+ L +L LD N+LSG +P + + L + N+ SG++P ++G S
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 348 VLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 407
+ S+ ++ NRL G +PP+ N +L +D+ N + Q + L N
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 408 C---GPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSL 464
G +G +K L +DL N+ G LP ++ ++ SL
Sbjct: 234 AFDLGKVGLSK------NLNGLDLRNNRIYGTLP--------------QGLTQLKFLHSL 273
Query: 465 NYSYYESISLTMKGNDIQ 482
N S+ +G ++Q
Sbjct: 274 NVSFNNLCGEIPQGGNLQ 291
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 131/299 (43%), Gaps = 29/299 (9%)
Query: 254 LQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGP--IPECLGNSTSLSFLDVGN-N 310
L D N G + + + R++ LD+ NL P IP L N L+FL +G N
Sbjct: 28 LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87
Query: 311 SLSGPIPEYLGNST-LEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVN 369
+L GPIP + T L L + SG++P + LV+L + N L G LPPS+ +
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 370 CRHLEVIDVGNNQINETFPHWLDVLPEL-QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDL 428
+L I N+I+ P +L +T+ NR G I T + L +DL
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---NLAFVDL 204
Query: 429 SYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILT 488
S N G + + D N+ +++ ++ SL + + + L
Sbjct: 205 SRNMLEGDASVLF--------GSDKNTQKIHLAKN---------SLAFDLGKVGLSKNLN 247
Query: 489 TFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNK 547
+DL +NR G + + L +L L SLN+S NNL G IP NL + ++NK
Sbjct: 248 G---LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 7/212 (3%)
Query: 230 LTYLRLSG-NHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 288
L +L + G N+L GP+PP+++ L L + + N+SG IP+ L L LD N L
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 289 SGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRM--NKFSGSLPQTFGKS 346
SG +P + + +L + N +SG IP+ G+ + M + N+ +G +P TF +
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-N 196
Query: 347 CVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNR 406
L + L+ N LEG + ++ + I + N + + + L L LR+NR
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255
Query: 407 FCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLP 438
G + T++ F L +++S+N G +P
Sbjct: 256 IYGTLPQGLTQLKF--LHSLNVSFNNLCGEIP 285
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 118/261 (45%), Gaps = 24/261 (9%)
Query: 42 PGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFA 101
P L +L N ++G I N L+G IP +I +L L ++ ++ N SG++ + +
Sbjct: 69 PSSLANLPYLNFLYIGGI-----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LS 122
Query: 102 KLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNIS-EFPDILKTQHQL-DWLDL 159
++K L L S +LS + ++ SS PNL + IS PD + +L + +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 160 SENQIRGRIPSWMWDIGVHTLFRLDLSRNFL---TSIDHLPWKNLEFLTLDSNLLQGSLP 216
S N++ G+IP ++ L +DLSRN L S+ KN + + L N L L
Sbjct: 182 SRNRLTGKIPPTFANL---NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 217 NLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNST 276
+ NL L L N + G LP L+ L L+V NNL G IP+ GN
Sbjct: 239 KV------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291
Query: 277 RLSFLDVRNNN--LSGPIPEC 295
R NN P+P C
Sbjct: 292 RFDVSAYANNKCLCGSPLPAC 312
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 498 NRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 553
N G I + KL L L I+H N++G IP L + L +LD S N L+G +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 487 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 546
LT + ++ G I + L ++ +L +L+ S+N L+G +P S+ +L L + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 547 KLAGRIP 553
+++G IP
Sbjct: 160 RISGAIP 166
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 153/360 (42%), Gaps = 88/360 (24%)
Query: 208 SNLLQGSLPNLPPHM-TYAKGCN-----------LTYLRLSGNHLEG--PLPPSLSNCVN 253
+NL SLP LPPH+ + CN L L + N+L+ LPP
Sbjct: 79 NNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL------ 132
Query: 254 LQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLS 313
L+ L V NN L +PE L NS+ L +DV NN+L +P+ SL F+ GNN L
Sbjct: 133 LEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE 186
Query: 314 GPIPE----------YLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPL 363
+PE Y N++L+ ++ SL + +L L
Sbjct: 187 E-LPELQNLPFLTAIYADNNSLK----KLPDLPLSLESIVAGNNILEEL----------- 230
Query: 364 PPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVP-FPK 422
P L N L I NN + +T P D+ P L+ L +R N T +P P+
Sbjct: 231 -PELQNLPFLTTIYADNNLL-KTLP---DLPPSLEALNVRDNYL--------TDLPELPQ 277
Query: 423 -LRIIDLSYNQFTGV--LP--IWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMK 477
L +D+S N F+G+ LP ++YLN +R + + LN S + I L
Sbjct: 278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP--SLEELNVSNNKLIELPAL 335
Query: 478 GNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTG--GIPSSLRNL 535
++ER++ +F ++EV +LK L++ +N L IP S+ +L
Sbjct: 336 P--PRLERLIASF-----------NHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDL 382
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 398 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 457
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 458 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 514
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 515 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 549
+ LN S N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 100 FAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWL 157
AKL NL+ LI +N +S T L + NL L L N ++ DI L + L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDL 244
Query: 158 DLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPN 217
DL+ NQI P G+ L L L N +++I P L LT + L + L +
Sbjct: 245 DLANNQISNLAPLS----GLTKLTELKLGANQISNIS--PLAGLTALT-NLELNENQLED 297
Query: 218 LPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTR 277
+ P + NLTYL L N++ P +S+ LQ L NN +S L N T
Sbjct: 298 ISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTN 350
Query: 278 LSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN 322
+++L +N +S P L N T ++ L + + + + Y N
Sbjct: 351 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 393
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 27/235 (11%)
Query: 89 NNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFP--NLWALGLSACNISEFPD 146
NN ++ DF LKNL LIL N +S K++ + P L L LS + E P+
Sbjct: 61 NNKITEIKDGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPE 117
Query: 147 ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTS--IDHLPWKNLEFL 204
K L L + EN+I ++ +++ G++ + ++L N L S I++ ++ ++ L
Sbjct: 118 --KMPKTLQELRVHENEIT-KVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 205 TL----DSNLLQGSLPN-LPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDV 259
+ D+N+ ++P LPP +LT L L GN + SL NL L +
Sbjct: 174 SYIRIADTNIT--TIPQGLPP--------SLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 260 GNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG 314
N++S L N+ L L + NN L +P L + + + + NN++S
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 27/235 (11%)
Query: 89 NNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFP--NLWALGLSACNISEFPD 146
NN ++ DF LKNL LIL N +S K++ + P L L LS + E P+
Sbjct: 61 NNKITEIKDGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPE 117
Query: 147 ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTS--IDHLPWKNLEFL 204
K L L + EN+I ++ +++ G++ + ++L N L S I++ ++ ++ L
Sbjct: 118 --KMPKTLQELRVHENEIT-KVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 205 TL----DSNLLQGSLPN-LPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDV 259
+ D+N+ ++P LPP +LT L L GN + SL NL L +
Sbjct: 174 SYIRIADTNIT--TIPQGLPP--------SLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 260 GNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG 314
N++S L N+ L L + NN L +P L + + + + NN++S
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 109/434 (25%), Positives = 177/434 (40%), Gaps = 35/434 (8%)
Query: 123 TVNSSFPNLWALGLSACNISEF-PDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLF 181
T S NL L L+ C I D ++QH+LD L L+ N + + + G L
Sbjct: 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS--GPKALK 108
Query: 182 RLDLSRNFLTSIDHLPWKN---LEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGN 238
L + ++SID +P N LE L L SN + S LP K L + + +
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI--SSIKLPKGFPTEKLKVLDFQNNAIH 166
Query: 239 HLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGN 298
+L SL NL L++ N+++G P ++ S NL I + L N
Sbjct: 167 YLSKEDMSSLQQATNLS-LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL-VIFKGLKN 224
Query: 299 STSLS-----FLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLK 353
ST S F D+ + +S + E L ++E ++++ + F TF L L
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284
Query: 354 LNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGD 413
L L LP LV L+ + + N+ P L L+++ N +G
Sbjct: 285 LTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG- 342
Query: 414 TKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESIS 473
T LR +DLS++ I + +R +++++SLN SY E +S
Sbjct: 343 TGCLENLENLRELDLSHDD------IETSDCCNLQLRN------LSHLQSLNLSYNEPLS 390
Query: 474 LTMKGNDIQMERILTTFATIDLSSNRFQGEISEV-LGKLNSLKSLNISHNNLTGGIPSSL 532
L + + +DL+ R + + ++ L+ LK LN+SH+ L
Sbjct: 391 LKTEAF-----KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445
Query: 533 RNLTELESLDLSSN 546
L L+ L+L N
Sbjct: 446 DGLPALQHLNLQGN 459
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 398 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 457
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 458 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 514
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 515 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 549
+ L+ S N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 100 FAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWL 157
AKL NL+ LI +N +S T L + NL L L N ++ DI L + L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDL 244
Query: 158 DLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPN 217
DL+ NQI P G+ L L L N +++I P L LT + L + L +
Sbjct: 245 DLANNQISNLAPLS----GLTKLTELKLGANQISNIS--PLAGLTALT-NLELNENQLED 297
Query: 218 LPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTR 277
+ P + NLTYL L N++ P +S+ LQ L NN +S L N T
Sbjct: 298 ISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTN 350
Query: 278 LSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN 322
+++L +N +S P L N T ++ L + + + + Y N
Sbjct: 351 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 393
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 398 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 457
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 458 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 514
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 515 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 549
+ L+ S N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 100 FAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWL 157
AKL NL+ LI +N +S T L + NL L L N ++ DI L + L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDL 244
Query: 158 DLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPN 217
DL+ NQI P G+ L L L N +++I P L LT + L + L +
Sbjct: 245 DLANNQISNLAPLS----GLTKLTELKLGANQISNIS--PLAGLTALT-NLELNENQLED 297
Query: 218 LPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTR 277
+ P + NLTYL L N++ P +S+ LQ L NN +S L N T
Sbjct: 298 ISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD--VSSLANLTN 350
Query: 278 LSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN 322
+++L +N +S P L N T ++ L + + + + Y N
Sbjct: 351 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 393
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 140/319 (43%), Gaps = 45/319 (14%)
Query: 228 CNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNN 287
NL YL L+GN + P LSN V L L +G N ++ L N T L L + +N
Sbjct: 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDN 121
Query: 288 LSGPIPECLGNSTSLSFLDVG-NNSLSGPIPEYLGNST-LEVLDMRMNKFSGSLPQTFGK 345
+S P L N T L++G N++LS P L N T L L + +K P
Sbjct: 122 ISDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--IAN 175
Query: 346 SCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 405
L SL LN N++E P + + H V NQI + P + L L + +N
Sbjct: 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV--NQITDITP--VANXTRLNSLKIGNN 231
Query: 406 RFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLN 465
+ I D +L +++ NQ + + N K + + ++ LN
Sbjct: 232 K----ITDLSPLANLSQLTWLEIGTNQISDI------NAVKDLTK----------LKXLN 271
Query: 466 YSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLT 525
+ + +DI + L+ ++ L++N+ E EV+G L +L +L +S N++T
Sbjct: 272 VG-------SNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT 324
Query: 526 GGIPSSLRNLTELESLDLS 544
P L +L++ +S D +
Sbjct: 325 DIRP--LASLSKXDSADFA 341
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 159/390 (40%), Gaps = 63/390 (16%)
Query: 213 GSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECL 272
GSL ++P +T A + L LS N + L CVNLQ L + +N ++ +
Sbjct: 15 GSLNSIPSGLTEA----VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 70
Query: 273 GNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLS--GPIPEYLGNSTLEVLDM 330
+ L LD+ N LS +SL+FL++ N G + + L++L +
Sbjct: 71 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 130
Query: 331 -RMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPH 389
M+ F+ + F L L+++ + L+ P SL + +++ + + Q
Sbjct: 131 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 190
Query: 390 WLDVLPELQVLTLR---------SNRFCGPIGDTKTRVPFPKLRIIDLS-------YNQF 433
++DV ++ L LR S G + F ++I D S NQ
Sbjct: 191 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 250
Query: 434 TGVLPIWY----LNGFKAMMRRDDN------SIEVNYMRSLN----YSYYE---SISLTM 476
+G+L + + LNG D++ +E +R L+ Y +Y+ SLT
Sbjct: 251 SGLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYDLSTLYSLTE 310
Query: 477 KGNDIQME------------RILTTFATIDLSSNRFQGEI---SEVLGKLNSLKSLNISH 521
+ I +E + L + +DLS N E S SL++L +
Sbjct: 311 RVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQ 370
Query: 522 NNL-----TGGIPSSLRNLTELESLDLSSN 546
N+L TG +L+NLT ++D+S N
Sbjct: 371 NHLASLEKTGETLLTLKNLT---NIDISKN 397
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 230 LTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLS 289
LT L L+GN L LP + N NL+VLD+ +N L+ +P LG+ +L + +N ++
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 290 GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLE--VLDMRMNKFSGSLPQ 341
+P GN +L FL V N L + L ++ + +R N+ LP
Sbjct: 307 T-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 504 ISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAG 550
IS + K + L L ++ N+LT +P+ ++NL+ L LDLS N+L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS 284
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 285 NNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFG 344
N N +P + N ++L LD+ +N L+ +P LG+ + +LP FG
Sbjct: 255 NGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTLPWEFG 313
Query: 345 KSCVLVSLKLNGNRLE 360
C L L + GN LE
Sbjct: 314 NLCNLQFLGVEGNPLE 329
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Query: 376 IDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTG 435
+ N+ I E++ ++V+P + + N + P +PF + +DLS+N
Sbjct: 13 LAAANSSIPESWEPCVEVVPNITYQCMELNFYKIP-----DNLPFST-KNLDLSFNPLRH 66
Query: 436 VLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESIS-LTMKGNDIQMERI-----LTT 489
L + F + D + E+ + Y +S L + GN IQ + L++
Sbjct: 67 -LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125
Query: 490 FATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 548
+ + +G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 71/183 (38%), Gaps = 30/183 (16%)
Query: 278 LSFLDVRNNNLS--GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMR---- 331
L FLD+ N LS G + + SL +LD+ N + +LG LE LD +
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 332 --MNKFSGSLP-------------------QTFGKSCVLVSLKLNGNRL-EGPLPPSLVN 369
M++FS L F L LK+ GN E LP
Sbjct: 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492
Query: 370 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLS 429
R+L +D+ Q+ + P + L LQVL + N F DT L+++D S
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQVLDYS 550
Query: 430 YNQ 432
N
Sbjct: 551 LNH 553
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 43/246 (17%)
Query: 77 ELVNLTFVSLSFN--NFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWAL 134
+L +L F+ LS N +F G DF + +LKYL LS + +T++S+F L
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYL-----DLSFNGVITMSSNF-----L 417
Query: 135 GLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSID 194
GL QL+ LD + ++ ++ + + + L LD+S
Sbjct: 418 GLE---------------QLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAF 461
Query: 195 HLPW---KNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNC 251
+ + +LE L + N Q + LP T + NLT+L LS LE P + ++
Sbjct: 462 NGIFNGLSSLEVLKMAGNSFQENF--LPDIFTELR--NLTFLDLSQCQLEQLSPTAFNSL 517
Query: 252 VNLQVLDVGNNNLSG--PIP-ECLGNSTRLSFLDVR-NNNLSGPIPECLGNSTSLSFLDV 307
+LQVL++ +NN P +CL + L LD N+ ++ E +SL+FL++
Sbjct: 518 SSLQVLNMSHNNFFSLDTFPYKCLNS---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574
Query: 308 GNNSLS 313
N +
Sbjct: 575 TQNDFA 580
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 127 SFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDL 185
SFP L L LS C I D ++ L L L+ N I+ G+ +L +L
Sbjct: 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVA 131
Query: 186 SRNFLTSIDHLP---WKNLEFLTLDSNLLQG-SLPNLPPHMTYAKGCNLTYLRLSGNHLE 241
L S+++ P K L+ L + NL+Q LP ++T NL +L LS N ++
Sbjct: 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQ 186
Query: 242 GPLPPSLSNCVNLQVL 257
C +L+VL
Sbjct: 187 SIY------CTDLRVL 196
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 84/234 (35%), Gaps = 66/234 (28%)
Query: 371 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSY 430
+HLE+++ Q FP L L+ LT SN+ G+ + V P L +DLS
Sbjct: 331 QHLELVNCKFGQ----FPTL--KLKSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSR 380
Query: 431 NQFT----------GVLPIWYLN-GFKAMMRRDDNSIEVNYMRSLNYSY----------- 468
N + G + + YL+ F ++ N + + + L++ +
Sbjct: 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440
Query: 469 --------YESIS--------------------LTMKGNDIQMERI------LTTFATID 494
Y IS L M GN Q + L +D
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500
Query: 495 LSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 548
LS + + L+SL+ LN+SHNN + L L+ LD S N +
Sbjct: 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 508 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 548
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 127 SFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDL 185
SFP L L LS C I D ++ L L L+ N I+ G+ +L +L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVA 107
Query: 186 SRNFLTSIDHLP---WKNLEFLTLDSNLLQG-SLPNLPPHMTYAKGCNLTYLRLSGNHLE 241
L S+++ P K L+ L + NL+Q LP ++T NL +L LS N ++
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQ 162
Query: 242 GPLPPSLSNCVNLQVL 257
C +L+VL
Sbjct: 163 SIY------CTDLRVL 172
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 10/193 (5%)
Query: 154 LDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSI--DHLPWKNLEFLTLDSNLL 211
L++LDLS N + + D G +L LDLS N + ++ + L + LE L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ---- 404
Query: 212 QGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDV-GNNNLSGPIPE 270
+L + + NL YL +S H + +L+VL + GN+ +P+
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 271 CLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN--STLEVL 328
L+FLD+ L P + +SL L++ +N L +P+ + + ++L+ +
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKI 523
Query: 329 DMRMNKFSGSLPQ 341
+ N + S P+
Sbjct: 524 WLHTNPWDCSCPR 536
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 508 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 548
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 64/157 (40%), Gaps = 28/157 (17%)
Query: 278 LSFLDVRNNNLS--GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMR---- 331
L FLD+ N LS G + +TSL +LD+ N + +LG LE LD +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 332 --MNKFSGSLP-------------------QTFGKSCVLVSLKLNGNRL-EGPLPPSLVN 369
M++FS L F L LK+ GN E LP
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 370 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNR 406
R+L +D+ Q+ + P + L LQVL + SN+
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 36/193 (18%)
Query: 77 ELVNLTFVSLSFN--NFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWAL 134
+L +L F+ LS N +F G DF +LKYL LS + +T++S+F L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYL-----DLSFNGVITMSSNF-----L 393
Query: 135 GLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSID 194
GL QL+ LD + ++ ++ + + + L LD+S
Sbjct: 394 GL---------------EQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 195 HLPW---KNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNC 251
+ + +LE L + N Q + LP T + NLT+L LS LE P + ++
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENF--LPDIFTELR--NLTFLDLSQCQLEQLSPTAFNSL 493
Query: 252 VNLQVLDVGNNNL 264
+LQVL++ +N L
Sbjct: 494 SSLQVLNMASNQL 506
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 127 SFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDL 185
SFP L L LS C I D ++ L L L+ N I+ G+ +L +L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVA 107
Query: 186 SRNFLTSIDHLP---WKNLEFLTLDSNLLQG-SLPNLPPHMTYAKGCNLTYLRLSGNHLE 241
L S+++ P K L+ L + NL+Q LP ++T NL +L LS N ++
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQ 162
Query: 242 GPLPPSLSNCVNLQVL 257
C +L+VL
Sbjct: 163 SIY------CTDLRVL 172
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 508 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 548
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 127 SFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDL 185
SFP L L LS C I D ++ L L L+ N I+ G+ +L +L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVA 109
Query: 186 SRNFLTSIDHLP---WKNLEFLTLDSNLLQG-SLPNLPPHMTYAKGCNLTYLRLSGNHLE 241
L S+++ P K L+ L + NL+Q LP ++T NL +L LS N ++
Sbjct: 110 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQ 164
Query: 242 GPLPPSLSNCVNLQVL 257
C +L+VL
Sbjct: 165 SIY------CTDLRVL 174
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 508 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 548
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 127 SFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDL 185
SFP L L LS C I D ++ L L L+ N I+ G+ +L +L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVA 109
Query: 186 SRNFLTSIDHLP---WKNLEFLTLDSNLLQG-SLPNLPPHMTYAKGCNLTYLRLSGNHLE 241
L S+++ P K L+ L + NL+Q LP ++T NL +L LS N ++
Sbjct: 110 LETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQ 164
Query: 242 GPLPPSLSNCVNLQVL 257
C +L+VL
Sbjct: 165 SIY------CTDLRVL 174
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 508 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 548
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 127 SFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDL 185
SFP L L LS C I D ++ L L L+ N I+ G+ +L +L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVA 108
Query: 186 SRNFLTSIDHLP---WKNLEFLTLDSNLLQG-SLPNLPPHMTYAKGCNLTYLRLSGNHLE 241
L S+++ P K L+ L + NL+Q LP ++T NL +L LS N ++
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQ 163
Query: 242 GPLPPSLSNCVNLQVL 257
C +L+VL
Sbjct: 164 SIY------CTDLRVL 173
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 508 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 548
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 127 SFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDL 185
SFP L L LS C I D ++ L L L+ N I+ G+ +L +L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVA 108
Query: 186 SRNFLTSIDHLP---WKNLEFLTLDSNLLQG-SLPNLPPHMTYAKGCNLTYLRLSGNHLE 241
L S+++ P K L+ L + NL+Q LP ++T NL +L LS N ++
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQ 163
Query: 242 GPLPPSLSNCVNLQVL 257
C +L+VL
Sbjct: 164 SIY------CTDLRVL 173
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 23/248 (9%)
Query: 213 GSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECL 272
GSL ++P +T A + L LS N + L CVNLQ L + +N ++ +
Sbjct: 41 GSLNSIPSGLTEA----VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96
Query: 273 GNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLS--GPIPEYLGNSTLEVLDM 330
+ L LD+ N LS +SL+FL++ N G + + L++L +
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156
Query: 331 -RMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPH 389
M+ F+ + F L L+++ + L+ P SL + +++ + + Q
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216
Query: 390 WLDVLPELQVLTLR---------SNRFCGPIGDTKTRVPFPKLRIIDLS-------YNQF 433
++DV ++ L LR S G + F ++I D S NQ
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276
Query: 434 TGVLPIWY 441
+G+L + +
Sbjct: 277 SGLLELEF 284
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 76 FELVNLTFVSLSFNNFSGSV--ELYDFAKLKNLKYLILSNISLSVST------KLTVNSS 127
F+ ++T + LS N F S+ +D ++ LILSN S+ K N +
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 128 FPNLWALGLSACNISE------FPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLF 181
F L A G+ C++S+ + L+ L L++N+I + W G+ L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--GLTHLL 326
Query: 182 RLDLSRNFLTSIDHLPWKNLEFLTL 206
+L+LS+NFL SID ++NL+ L +
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEV 351
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 16/117 (13%)
Query: 200 NLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSG-NHLEGPLPPSLSNCVNLQVLD 258
+L+ L L+ N L P + H+T +G +L RL+ +H + P NL++LD
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--------ANLEILD 532
Query: 259 VGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGP 315
+ N L P P+ LS LD+ +N I EC ST +++L+ N +++GP
Sbjct: 533 ISRNQLLAPNPDVF---VSLSVLDITHNKF---ICEC-ELSTFINWLNHTNVTIAGP 582
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 111/465 (23%), Positives = 181/465 (38%), Gaps = 90/465 (19%)
Query: 130 NLWALGLSACNISEFPDILKTQH-----QLDWLDLSENQIRGRIPSWMWDIGVHTLFRLD 184
+L+ L L C +S+ +LK + L LDLS+NQIR + +H F
Sbjct: 98 HLFELRLYFCGLSD--AVLKDGYFRNLKALTRLDLSKNQIRS--------LYLHPSFG-- 145
Query: 185 LSRNFLTSIDHLPWKNLEFLTLDSNL--LQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEG 242
N L SID N FL + L LQG L++ L+ N L
Sbjct: 146 -KLNSLKSIDF--SSNQIFLVCEHELEPLQGK--------------TLSFFSLAANSLYS 188
Query: 243 PLPPSLSNCVN------LQVLDVGNN----NLSGPIPECLGNSTRLSFLDVRN------- 285
+ C+N L++LDV N +++G + S S + +
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248
Query: 286 -NNLSGPIPECLGN--STSLSFLDVGNN---SLSGPIPEYLGNSTLEVLDMRMNKFSGSL 339
+N+ P +S+ LD+ + SL+ + E L + L+VL++ NK +
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD--LKVLNLAYNKINKIA 306
Query: 340 PQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQV 399
+ F L L L+ N L + + ID+ N I L +LQ
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 400 LTLRSN-----RFCGPIGDT----KTRVPFPKLRI----IDLSYNQFTGVLPIWYLNGFK 446
L LR N F I D V PK+ + I LS N+ + +++L
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL---- 422
Query: 447 AMMRRDDNSIEVNYMRSLNYSYYESISLTMK-GNDIQMERILTTFATIDLSSNRFQGEIS 505
+R I + LN + + S S + +E++ + L+ ++ E+
Sbjct: 423 --LRVPHLQILI-----LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA---WETELC 472
Query: 506 -EVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 549
+V L+ L+ L ++HN L P +LT L L L+SN+L
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 111/274 (40%), Gaps = 29/274 (10%)
Query: 182 RLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLE 241
LDLS F+ S++ ++ L+ L + NL + + Y NL L LS N L
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKV-LNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLG 327
Query: 242 GPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSG-----PIPECL 296
+ + +D+ N+++ + +L LD+R+N L+ IP+
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387
Query: 297 GNSTSL----------SFLDVGNNSLSGPIPEY--LGNSTLEVLDMRMNKFSG-SLPQTF 343
+ L + + + N L Y L L++L + N+FS S QT
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447
Query: 344 GKSCVLVSLKLNGNRLEGPLPPSLV-----NCRHLEVIDVGNNQINETFPHWLDVLPELQ 398
++ L L L N L+ L HL+V+ + +N +N P L L+
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Query: 399 VLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQ 432
L+L SNR + +P L I+D+S NQ
Sbjct: 508 GLSLNSNRLTVL---SHNDLP-ANLEILDISRNQ 537
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 42/217 (19%)
Query: 59 IPAS-----LDNQLIGSIPSSIFE-LVNLTFVSLSFN--NFSGSVELYDFAKLKNLKYLI 110
IP+S L++ + S+P +F+ L LT +SLS N +F G DF +LKYL
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYL- 83
Query: 111 LSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPS 170
LS + +T++S+F LGL QL+ LD + ++ ++
Sbjct: 84 ----DLSFNGVITMSSNF-----LGL---------------EQLEHLDFQHSNLK-QMSE 118
Query: 171 WMWDIGVHTLFRLDLSRNFLTSIDHLPW---KNLEFLTLDSNLLQGSLPNLPPHMTYAKG 227
+ + + L LD+S + + +LE L + N Q + LP T +
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF--LPDIFTELR- 175
Query: 228 CNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNL 264
NLT+L LS LE P + ++ +LQVL++ +NN
Sbjct: 176 -NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 30/185 (16%)
Query: 276 TRLSFLDVRNNNLS--GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMR-- 331
T+L+ L + +N LS G + +TSL +LD+ N + +LG LE LD +
Sbjct: 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111
Query: 332 ----MNKFSGSLP-------------------QTFGKSCVLVSLKLNGNRL-EGPLPPSL 367
M++FS L F L LK+ GN E LP
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171
Query: 368 VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIID 427
R+L +D+ Q+ + P + L LQVL + N F DT L+++D
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQVLD 229
Query: 428 LSYNQ 432
S N
Sbjct: 230 YSLNH 234
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 38/207 (18%)
Query: 376 IDVGNNQINETFPHWL-DVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYN--- 431
+++ +N++ ++ PH + D L +L L+L SN +++ L+ +DLS+N
Sbjct: 33 LELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 432 ----QFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESIS-------------- 473
F G+ + +L+ + +++ E + SL Y IS
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMS---EFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 474 ------LTMKGNDIQMERI------LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISH 521
L M GN Q + L +DLS + + L+SL+ LN+SH
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 522 NNLTGGIPSSLRNLTELESLDLSSNKL 548
NN + L L+ LD S N +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 398 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 457
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 458 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 514
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 515 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 549
+ LN N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLNFG-NQVTDLKP--LANLTTLERLDISSNKVS 185
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 100 FAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWL 157
AKL NL+ LI +N +S T L + NL L L N ++ DI L + L L
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDL 243
Query: 158 DLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPN 217
DL+ NQI P G+ L L L N +++I P L LT + L + L +
Sbjct: 244 DLANNQISNLAPLS----GLTKLTELKLGANQISNIS--PLAGLTALT-NLELNENQLED 296
Query: 218 LPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTR 277
+ P + NLTYL L N++ P +S+ LQ L NN +S L N T
Sbjct: 297 ISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTN 349
Query: 278 LSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN 322
+++L +N +S P L N T ++ L + + + + Y N
Sbjct: 350 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 392
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 398 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 457
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 458 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 514
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 515 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 549
+ LN N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLNFG-NQVTDLKP--LANLTTLERLDISSNKVS 185
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 100 FAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWL 157
AKL NL+ LI +N +S T L + NL L L N ++ DI L + L L
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDL 243
Query: 158 DLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPN 217
DL+ NQI P G+ L L L N +++I P L LT + L + L +
Sbjct: 244 DLANNQISNLAPLS----GLTKLTELKLGANQISNIS--PLAGLTALT-NLELNENQLED 296
Query: 218 LPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTR 277
+ P + NLTYL L N++ P +S+ LQ L NN +S L N T
Sbjct: 297 ISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD--VSSLANLTN 349
Query: 278 LSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN 322
+++L +N +S P L N T ++ L + + + + Y N
Sbjct: 350 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 392
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 276 TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTLEVLDMRMNK 334
T+L++L++ N L + T L L + NN L+ P+ + + L+ L + N+
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 335 FSGSLPQ-TFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPH-WLD 392
SLP F + L L+LN N+L+ + +L+ + + NQ+ ++ PH D
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFD 176
Query: 393 VLPELQVLTLRSNRF 407
L +LQ +TL N+F
Sbjct: 177 RLGKLQTITLFGNQF 191
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 117 SVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIG 176
SV + + ++ +L + GL+ + + F + K L WL+L NQ++ + + ++D
Sbjct: 28 SVPSGIPADTEKLDLQSTGLATLSDATFRGLTK----LTWLNLDYNQLQ-TLSAGVFD-D 81
Query: 177 VHTLFRLDLSRNFLTSIDHLPWKNLEFLT-LDSNLLQGSLPNLPPHMTYAKGCNLTYLRL 235
+ L L L+ N L S LP + LT LD L G+ P + + L LRL
Sbjct: 82 LTELGTLGLANNQLAS---LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 236 SGNHLEGPLPPSLSNCVNLQVLDVGNNNL 264
+ N L+ + NLQ L + N L
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 276 TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTLEVLDMRMNK 334
T+L++L++ N L + T L L + NN L+ P+ + + L+ L + N+
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 335 FSGSLPQ-TFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPH-WLD 392
SLP F + L L+LN N+L+ + +L+ + + NQ+ ++ PH D
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFD 176
Query: 393 VLPELQVLTLRSNRF 407
L +LQ +TL N+F
Sbjct: 177 RLGKLQTITLFGNQF 191
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 117 SVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIG 176
SV + + ++ +L + GL+ + + F + K L WL+L NQ++ + + ++D
Sbjct: 28 SVPSGIPADTEKLDLQSTGLATLSDATFRGLTK----LTWLNLDYNQLQ-TLSAGVFD-D 81
Query: 177 VHTLFRLDLSRNFLTSIDHLPWKNLEFLT-LDSNLLQGSLPNLPPHMTYAKGCNLTYLRL 235
+ L L L+ N L S LP + LT LD L G+ P + + L LRL
Sbjct: 82 LTELGTLGLANNQLAS---LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 236 SGNHLEGPLPPSLSNCVNLQVLDVGNNNL 264
+ N L+ + NLQ L + N L
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 124/294 (42%), Gaps = 40/294 (13%)
Query: 140 NISEFP--DILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLP 197
N+ FP L+ +L L+ NQ+ G++P++ +I L L+L+ N +T I P
Sbjct: 316 NLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI---KLASLNLAYNQITEI---P 369
Query: 198 W------KNLEFLTLDSNLLQGSLPNL--PPHMTYAKGCNLTYLRL---SGNHLEGPLPP 246
+ +E L+ N L+ +PN+ ++ + +Y + G + + PL P
Sbjct: 370 ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFD-PLDP 427
Query: 247 SLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP--------ECLGN 298
+ +N+ +++ NN +S E + LS +++ N L+ IP E N
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKDENENFKN 486
Query: 299 STSLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLPQTFGKSC-----VLVS 351
+ L+ +D+ N L+ ++ + L +D+ N FS Q S +
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546
Query: 352 LKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 405
GNR P + C L + +G+N I + + P + VL ++ N
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITPNISVLDIKDN 597
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 119/315 (37%), Gaps = 63/315 (20%)
Query: 194 DHLPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKG------CNLTYLR-LSGNHLEGPLPP 246
+ L W NL+ LT ++ + PNL T+ K N+ R +SG L+
Sbjct: 241 EDLKWDNLKDLT---DVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQA 297
Query: 247 SLSNCV--NLQVLDVGNNNLSG-PIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLS 303
V +Q++ +G NNL P+ L +L L+ N L G +P G+ L+
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLA 356
Query: 304 FLDVGNNSLSGPIPEYLG-NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLE-- 360
L++ N ++ + G +E L NK +P F V V ++ + E
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEIG 415
Query: 361 -------GPLPPSLVNCRHLEVIDVGNNQINETFPHWL--------------DVLPE--- 396
PL P+ ++ I++ NNQI++ FP L + L E
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLXGNXLTEIPK 474
Query: 397 ---------------LQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQF----TGVL 437
L + LR N+ + D P L IDLSYN F T L
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533
Query: 438 PIWYLNGFKAMMRRD 452
L GF +RD
Sbjct: 534 NSSTLKGFGIRNQRD 548
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 100 FAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWL 157
AKL NL+ LI +N +S T L + NL L L N ++ DI L + L L
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDL 247
Query: 158 DLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPN 217
DL+ NQI P G+ L L L N +++I P L LT + L + L +
Sbjct: 248 DLANNQISNLAPLS----GLTKLTELKLGANQISNIS--PLAGLTALT-NLELNENQLED 300
Query: 218 LPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTR 277
+ P + NLTYL L N++ P +S+ LQ L NN +S L N T
Sbjct: 301 ISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTN 353
Query: 278 LSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN 322
+++L +N +S P L N T ++ L + + + + Y N
Sbjct: 354 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 396
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 398 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 457
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 46 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 103
Query: 458 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 514
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 104 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 157
Query: 515 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 549
+ L+ N +T P L NLT LE LD+SSNK++
Sbjct: 158 QQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS 189
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 15/171 (8%)
Query: 383 INETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYL 442
I + FP D E T+++N + D T+ + I + + V I YL
Sbjct: 9 IKQIFPD--DAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL 62
Query: 443 NGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQ-----MERILTTFATIDLSS 497
+ + + +++ ++ L Y L + GN +Q + LT + L
Sbjct: 63 PNVRYLALGGNKLHDISALKELTNLTY----LILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 498 NRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 548
N+ Q V KL +L LN++HN L LT L LDLS N+L
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 14/142 (9%)
Query: 193 IDHLPWKNLEFLTLDSNLLQ--GSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSN 250
I +LP N+ +L L N L +L L NLTYL L+GN L+
Sbjct: 59 IQYLP--NVRYLALGGNKLHDISALKEL---------TNLTYLILTGNQLQSLPNGVFDK 107
Query: 251 CVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN 310
NL+ L + N L T L++L++ +N L T+L+ LD+ N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 311 SLSGPIPEYLGNSTLEVLDMRM 332
L +PE + + ++ D+R+
Sbjct: 168 QLQS-LPEGVFDKLTQLKDLRL 188
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 13/146 (8%)
Query: 200 NLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDV 259
NL+ L L N LQ SLP+ + K NLTYL L+ N L+ NL LD+
Sbjct: 110 NLKELVLVENQLQ-SLPD----GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 260 GNNNLSGPIPECLGNS-TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPE 318
N L +PE + + T+L L + N L TSL ++ + +N P
Sbjct: 165 SYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP- 222
Query: 319 YLGNSTLEVLDMRMNKFSGSLPQTFG 344
+ L +NK SG + + G
Sbjct: 223 -----GIRYLSEWINKHSGVVRNSAG 243
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 487 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 546
LT ++L+ N+ Q V KL +L L++S+N L LT+L+ L L N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 547 KL 548
+L
Sbjct: 192 QL 193
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 95/262 (36%), Gaps = 78/262 (29%)
Query: 229 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 288
N+T L L+ N L P + + L +LD G N++S PE L L++++N L
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 289 SGPIPECLGNSTSLSFLDVGNNSL----SGPIP--------------------------- 317
S + T+L+ LD+ +NS+ S P
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLE 145
Query: 318 --------------------EYLGNSTLEVLDMRMN---KFSGSLPQTFGKSCVLVSLKL 354
E+LGNS+L LD+ N +FS QT GK L +L L
Sbjct: 146 NLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGK---LFALLL 202
Query: 355 NGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDT 414
N +L L L C L + N L+L +N+ T
Sbjct: 203 NNAQLNPHLTEKL--CWELSNTSIQN-------------------LSLANNQLLATSEST 241
Query: 415 KTRVPFPKLRIIDLSYNQFTGV 436
+ + + L +DLSYN V
Sbjct: 242 FSGLKWTNLTQLDLSYNNLHDV 263
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 29/194 (14%)
Query: 100 FAKLKNLKYLILSNISLSVST---KLTVNSSFPNLWALGLSACNISEFPD-ILKTQHQLD 155
F L +LKYL LS S+ T + V+ + L L L+ +IS+ + QL
Sbjct: 349 FTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLR 408
Query: 156 WLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSL 215
LDL N+I ++ W G+ +F + LS N K L+ L+ S L SL
Sbjct: 409 ILDLGLNEIEQKLSGQEWR-GLRNIFEIYLSYN----------KYLQ-LSTSSFALVPSL 456
Query: 216 PNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNS 275
L K +++ P P NL +LD+ NNN++ + L
Sbjct: 457 QRLMLRRVALKNVDIS---------PSPFRP----LRNLTILDLSNNNIANINEDLLEGL 503
Query: 276 TRLSFLDVRNNNLS 289
L LD ++NNL+
Sbjct: 504 ENLEILDFQHNNLA 517
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 276 TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDMRMNK 334
+ ++ L++ +N L P + L+ LD G NS+S PE L+VL+++ N+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 335 FSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINET 386
S QTF L L L N + N ++L +D+ +N ++ T
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 481 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 539
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 71 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 128
Query: 540 SLDLSSNKLAGRIP 553
L L N+L P
Sbjct: 129 ELYLKGNELKTLPP 142
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 397 LQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSI 456
++ L L+ +RF I T + F +L+ +DL+ G LP +G K + +
Sbjct: 253 VESLNLQEHRF-SDISSTTFQC-FTQLQELDLTATHLKG-LP----SGMKGLNLLKKLVL 305
Query: 457 EVNYMRSL---NYSYYESIS-LTMKGNDIQME------RILTTFATIDLSSNRFQGE--I 504
VN+ L + + + S++ L ++GN ++ L T+DLS N +
Sbjct: 306 SVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCC 365
Query: 505 SEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 553
S L L+ L++LN+SHN G + + +LE LDL+ +L P
Sbjct: 366 SLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAP 414
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 481 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 539
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 540 SLDLSSNKLAGRIP 553
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 297 GNSTSLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLP----QTFGKSCVLV 350
G L LD+ +N L +P LG + L VLD+ N+ + SLP + G+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE---LQ 127
Query: 351 SLKLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 405
L L GN L+ LPP L+ LE + + NNQ+ E L+ L L L L+ N
Sbjct: 128 ELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 481 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 539
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 540 SLDLSSNKLAGRIP 553
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 297 GNSTSLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLP----QTFGKSCVLV 350
G L LD+ +N L +P LG + L VLD+ N+ + SLP + G+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE---LQ 127
Query: 351 SLKLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 405
L L GN L+ LPP L+ LE + + NNQ+ E L+ L L L L+ N
Sbjct: 128 ELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 481 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 539
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 540 SLDLSSNKLAGRIP 553
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 456 IEVNYMRSL-NYSYYESISLT---MKGNDIQ-----MERILTTFATIDLSSNRFQGEISE 506
+E N ++SL N + E SLT + GN +Q + LT+ ++LS+N+ Q +
Sbjct: 35 LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94
Query: 507 VLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 548
V KL LK L ++ N L LT+L+ L L N+L
Sbjct: 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 481 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 539
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 540 SLDLSSNKLAGRIP 553
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 297 GNSTSLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLP----QTFGKSCVLV 350
G L LD+ +N L +P LG + L VLD+ N+ + SLP + G+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE---LQ 127
Query: 351 SLKLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 405
L L GN L+ LPP L+ LE + + NNQ+ E L+ L L L L+ N
Sbjct: 128 ELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 481 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 539
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 540 SLDLSSNKLAGRIP 553
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 297 GNSTSLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLP----QTFGKSCVLV 350
G L LD+ +N L +P LG + L VLD+ N+ + SLP + G+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE---LQ 127
Query: 351 SLKLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 405
L L GN L+ LPP L+ LE + + NNQ+ E L+ L L L L+ N
Sbjct: 128 ELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 481 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 539
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 540 SLDLSSNKLAGRIP 553
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 481 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 539
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 540 SLDLSSNKLAGRIP 553
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 154 LDWLDLSEN-QIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNL---EFLTLDSN 209
L+ LDLS+N Q+R P+ +G L L L R L + ++ L ++L L N
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLG--RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 138
Query: 210 LLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIP 269
LQ P T+ NLT+L L GN + + +L L + N ++ P
Sbjct: 139 ALQAL-----PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 193
Query: 270 ECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN 310
+ RL L + NNLS E L +L +L + +N
Sbjct: 194 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 8/218 (3%)
Query: 235 LSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN-NLSGPIP 293
L GN + S C NL +L + +N L+ L LD+ +N L P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 294 ECLGNSTSLSFLDVGNNSLSGPIPE-YLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSL 352
L L + L P + G + L+ L ++ N TF L L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
Query: 353 KLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIG 412
L+GNR+ + L+ + + N++ PH L L L L +N
Sbjct: 158 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-- 215
Query: 413 DTKTRVPFPKLRIIDLSYNQFTG---VLPIW-YLNGFK 446
T+ P L+ + L+ N + P+W +L F+
Sbjct: 216 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 253
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 481 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 539
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 540 SLDLSSNKLAGRIP 553
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 481 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 539
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 540 SLDLSSNKLAGRIP 553
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 154 LDWLDLSEN-QIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNL---EFLTLDSN 209
L+ LDLS+N Q+R P+ +G L L L R L + ++ L ++L L N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLG--RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139
Query: 210 LLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIP 269
LQ P T+ NLT+L L GN + + +L L + N ++ P
Sbjct: 140 ALQAL-----PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 270 ECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN 310
+ RL L + NNLS E L +L +L + +N
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 8/218 (3%)
Query: 235 LSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN-NLSGPIP 293
L GN + S C NL +L + +N L+ L LD+ +N L P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 294 ECLGNSTSLSFLDVGNNSLSGPIPE-YLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSL 352
L L + L P + G + L+ L ++ N TF L L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 353 KLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIG 412
L+GNR+ + L+ + + N++ PH L L L L +N
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-- 216
Query: 413 DTKTRVPFPKLRIIDLSYNQFTG---VLPIW-YLNGFK 446
T+ P L+ + L+ N + P+W +L F+
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 254
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 398 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 457
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 47 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 104
Query: 458 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 514
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 105 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 158
Query: 515 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 549
+ L+ N +T P L NLT LE LD+SSNK++
Sbjct: 159 QQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS 190
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 100 FAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWL 157
AKL NL+ LI +N +S T L + NL L L N ++ DI L + L L
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDL 248
Query: 158 DLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPN 217
DL+ NQI P G+ L L L N +++I P L LT + L + L +
Sbjct: 249 DLANNQISNLAPLS----GLTKLTELKLGANQISNIS--PLAGLTALT-NLELNENQLED 301
Query: 218 LPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTR 277
+ P + NLTYL L N++ P +S+ LQ L NN +S L N T
Sbjct: 302 ISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTN 354
Query: 278 LSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN 322
+++L +N +S P L N T ++ L + + + + Y N
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 111/500 (22%), Positives = 187/500 (37%), Gaps = 108/500 (21%)
Query: 123 TVNSSFPNLWALGLSACNIS-EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLF 181
T S NL L L+ C I+ D ++ HQL+ + L+ N + + + G L
Sbjct: 50 TTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSL--TGPKFLK 107
Query: 182 RLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLE 241
L L++ +++++ +P NLE NL L L NH+
Sbjct: 108 HLFLTQTGISNLEFIPVHNLE--------------------------NLESLHLGSNHIS 141
Query: 242 GPLPPSLSNCVNLQVLDVGNNN---LSGPIPECLGNSTRLSFLDVRNNNLSGPIP----- 293
P NL+VLD NN +S L +T LS L+ N++ G P
Sbjct: 142 SINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLS-LNFNGNDIKGIEPGAFIS 200
Query: 294 ------------------ECLGNSTSLS-----FLDVGNNSLSGPIPEYLGNSTLEVLDM 330
+ L NST S F D + L+ E L + ++E +++
Sbjct: 201 KIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINL 260
Query: 331 RMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHW 390
+ ++FS TF + L L L G LP + L+ + + N ++
Sbjct: 261 QKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQIN 319
Query: 391 LDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYN----------QFTGVLPIW 440
P L+ L ++ N +G T+ L+ +DLS++ Q + +
Sbjct: 320 AASFPSLRDLYIKGNMRKLDLG-TRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQ 378
Query: 441 YLN-------GFKAMMRRDDNSIE--------------------VNYMRSLNYSYYESIS 473
YLN G + ++ +E ++ +R LN S+
Sbjct: 379 YLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH----- 433
Query: 474 LTMKGNDIQMERILTTFATIDLSSNRFQ-GEISE--VLGKLNSLKSLNISHNNLTGGIPS 530
+ ++ + L ++L N FQ G IS+ +L + SL+ L +S NL
Sbjct: 434 CLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQ 493
Query: 531 SLRNLTELESLDLSSNKLAG 550
+ L + LDLS N L G
Sbjct: 494 AFHGLRNVNHLDLSHNSLTG 513
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 120/297 (40%), Gaps = 47/297 (15%)
Query: 298 NSTSLSFLDVGNNSLSG-PIPEYLGNSTLEVLDMRMN-------KFSGSLPQTFGKSCVL 349
N +L L +G+N +S +PE L+VLD + N K + SL Q
Sbjct: 126 NLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATN----- 180
Query: 350 VSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNN----------QINETFPHWLDVLPELQV 399
+SL NGN ++G P + ++ + + + G + Q + WL +
Sbjct: 181 LSLNFNGNDIKGIEPGAFIS-KIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDD 239
Query: 400 LTLRSNRFCGPIGDTKTRVPFPKLRIIDLS---YNQFTGV----LPIWYLNGF------- 445
L S F G + + K R DLS + FT V L +LNG
Sbjct: 240 QYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGM 299
Query: 446 KAMMRRDDNSIEVNYMRSLNYSYYESI-SLTMKGNDIQME------RILTTFATIDLSSN 498
++ + N+ + + +N + + S+ L +KGN +++ L +DLS +
Sbjct: 300 NSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHS 359
Query: 499 RFQGE--ISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 553
+ + L L L+ LN+S+N G + + +LE LD++ L + P
Sbjct: 360 DIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 44/193 (22%)
Query: 393 VLPELQVLTLRSNRF----CGPIGDTKTRVPFPKLRIIDLSYN-------QFTGVLPIWY 441
LP L L L N C D T LR +DLS+N F G+ + +
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTN----SLRHLDLSFNGAIIMSANFMGLEELQH 403
Query: 442 LNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLT--------------------MKGNDI 481
L+ + ++R E + SL Y IS T M GN
Sbjct: 404 LDFQHSTLKR---VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 482 QMERILTTFAT------IDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNL 535
+ + FA +DLS + + V L+ L+ LN+SHNNL S L
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520
Query: 536 TELESLDLSSNKL 548
L +LD S N++
Sbjct: 521 YSLSTLDCSFNRI 533
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 426 IDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESIS-LTMKGNDIQME 484
IDLS+N +L + + F + D + E+ + + +S L + GN IQ
Sbjct: 37 IDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95
Query: 485 RI-----LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNL-TGGIPSSLRNLTEL 538
LT+ + + S +G+L +LK LN++HN + + +P+ NLT L
Sbjct: 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155
Query: 539 ESLDLSSN 546
+DLS N
Sbjct: 156 VHVDLSYN 163
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 487 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 546
LT + L N Q V KL SLK L + +N L + LTEL++L L +N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 547 KLAGRIP 553
+L R+P
Sbjct: 192 QLK-RVP 197
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 8/200 (4%)
Query: 11 CDDTSNSQPAKSFEVKAITANIPAVTSE-GIYPGQLRHLDLGNNHFVGKIP-ASLDNQLI 68
C++ NS S ++ AI +NIPA T + + +L L H + K+ L++ +
Sbjct: 14 CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73
Query: 69 GSIPSSIF-ELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSS 127
++P+ IF EL NL + ++ N ++ + F +L NL L L L S V S
Sbjct: 74 QTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDS 131
Query: 128 FPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLS 186
L L L + P + L L L NQ++ R+P +D + L L L
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFD-KLTELKTLKLD 189
Query: 187 RNFLTSIDHLPWKNLEFLTL 206
N L + + +LE L +
Sbjct: 190 NNQLKRVPEGAFDSLEKLKM 209
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 54/133 (40%), Gaps = 9/133 (6%)
Query: 199 KNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLD 258
KNLE L + N LQ P + + NL LRL N L+ P + L L
Sbjct: 85 KNLETLWVTDNKLQAL-----PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 259 VGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPE-CLGNSTSLSFLDVGNNSLSGPIP 317
+G N L T L L + NN L +PE T L L + NN L +P
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKR-VP 197
Query: 318 EYLGNSTLEVLDM 330
E +S LE L M
Sbjct: 198 EGAFDS-LEKLKM 209
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 87/225 (38%), Gaps = 32/225 (14%)
Query: 183 LDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEG 242
+D S LT+I + + L L SN L SLP+ H L L L+ N L+
Sbjct: 21 VDCSSKKLTAIPSNIPADTKKLDLQSNKL-SSLPSKAFHRLTK----LRLLYLNDNKLQ- 74
Query: 243 PLPPSL-SNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTS 301
LP + NL+ L V +N L L+ L + N L P + T
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 302 LSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQ-TFGKSCVLVSLKLNGNRLE 360
L++L +G N L SLP+ F K L L+L N+L+
Sbjct: 135 LTYLSLGYNELQ------------------------SLPKGVFDKLTSLKELRLYNNQLK 170
Query: 361 GPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 405
+ L+ + + NNQ+ D L +L++L L+ N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 17/164 (10%)
Query: 281 LDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTLEVLDMRMNKFSGSL 339
LD+++N LS + T L L + +N L P + LE L + NK
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 340 PQTFGKSCVLVSLKLNGNRLEGPLPPSLVNC-RHLEVIDVGNNQINETFPHWLDVLPELQ 398
F + L L+L+ N+L+ LPP + + L + +G N++ D L L+
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 399 VLTLRSNRFCGPIGDTKTRVP------FPKLRIIDLSYNQFTGV 436
L L +N+ RVP +L+ + L NQ V
Sbjct: 161 ELRLYNNQL--------KRVPEGAFDKLTELKTLKLDNNQLKRV 196
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 44/193 (22%)
Query: 393 VLPELQVLTLRSNRF----CGPIGDTKTRVPFPKLRIIDLSYN-------QFTGVLPIWY 441
LP L L L N C D T LR +DLS+N F G+ + +
Sbjct: 343 ALPSLSYLDLSRNALSFSGCCSYSDLGTN----SLRHLDLSFNGAIIMSANFMGLEELQH 398
Query: 442 LNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLT--------------------MKGNDI 481
L+ + ++R E + SL Y IS T M GN
Sbjct: 399 LDFQHSTLKR---VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 455
Query: 482 QMERILTTFAT------IDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNL 535
+ + FA +DLS + + V L+ L+ LN+SHNNL S L
Sbjct: 456 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 515
Query: 536 TELESLDLSSNKL 548
L +LD S N++
Sbjct: 516 YSLSTLDCSFNRI 528
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 426 IDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESIS-LTMKGNDIQME 484
IDLS+N +L + + F + D + E+ + + +S L + GN IQ
Sbjct: 32 IDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 90
Query: 485 RI-----LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNL-TGGIPSSLRNLTEL 538
LT+ + + S +G+L +LK LN++HN + + +P+ NLT L
Sbjct: 91 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 150
Query: 539 ESLDLSSN 546
+DLS N
Sbjct: 151 VHVDLSYN 158
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 20/208 (9%)
Query: 244 LPPSL-SNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSL 302
LPP + N L VL + N+LS N+ +L+ L + NNNL + +TSL
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 303 SFLDVGNNSLSGP----IPE-YLGNSTLEVLDM--------RMNKFSGSLPQTFGKSCV- 348
L + +N L+ IP + N + +L ++ S+ G V
Sbjct: 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227
Query: 349 LVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFC 408
L LKL N L L+N L +D+ N++ + H + L+ L + +NR
Sbjct: 228 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL- 284
Query: 409 GPIGDTKTRVPFPKLRIIDLSYNQFTGV 436
+ P P L+++DLS+N V
Sbjct: 285 --VALNLYGQPIPTLKVLDLSHNHLLHV 310
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 119/293 (40%), Gaps = 60/293 (20%)
Query: 254 LQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLS 313
+Q L +G N + P N L+ L + N+LS N+ L+ L + NN+L
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154
Query: 314 GPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRL---EGPLPPSLVNC 370
R+ TF + L +L+L+ NRL + L PSL +
Sbjct: 155 -----------------RIED------DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191
Query: 371 R-------------HLEVIDVGNNQINETF-PHWLDVLPELQVLTLRSNRFCGPIGDTKT 416
+E +D +N IN P V EL +L L+ N + DT
Sbjct: 192 NVSYNLLSTLAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNN----LTDTAW 243
Query: 417 RVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTM 476
+ +P L +DLSYN+ ++ + F M R + I N + +LN Y + I T+
Sbjct: 244 LLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVALNL-YGQPIP-TL 297
Query: 477 KGNDIQMERILTTFA---TIDLSSNRFQGEISEVLGKL---NSLKSLNISHNN 523
K D+ +L D N + S V KL ++LK+L +SHN+
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 281 LDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLP 340
L++++N ++ P L N T ++ L++ N L + G +++ LD+ + + P
Sbjct: 74 LELKDNQITDLTP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTP 130
Query: 341 QTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVL 400
G S + V L L+ N++ P L +L+ + +GNNQ+N+ P L L +L L
Sbjct: 131 LA-GLSNLQV-LYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTL 184
Query: 401 TLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGF 445
N+ I D P L + L NQ + V P+ L+
Sbjct: 185 RADDNK----ISDISPLASLPNLIEVHLKDNQISDVSPLANLSNL 225
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 157 LDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLP-WKNLEFLTLDSNLLQGSL 215
L+L +NQI P + + L+LS N L ++ + ++++ L L S +
Sbjct: 74 LELKDNQITDLTPLK----NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 129
Query: 216 PNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNS 275
P A NL L L N + P L+ NLQ L +GNN ++ P L N
Sbjct: 130 P-------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANL 178
Query: 276 TRLSFLDVRNNNLSGPIP 293
++L+ L +N +S P
Sbjct: 179 SKLTTLRADDNKISDISP 196
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 12/220 (5%)
Query: 235 LSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN---NLSGP 291
L GN + S +C NL +L + +N L+G T L LD+ +N + P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 292 IP-ECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLV 350
LG+ +L G L + + G + L+ L ++ N TF L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGL--FRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 351 SLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGP 410
L L+GNR+ + L+ + + N + PH L L L L +N
Sbjct: 156 HLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL--S 213
Query: 411 IGDTKTRVPFPKLRIIDLSYNQFTG---VLPIW-YLNGFK 446
+ + VP L+ + L+ N + P+W +L F+
Sbjct: 214 MLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFR 253
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 154 LDWLDLSEN-QIRGRIPSWMWDIG-VHTLFRLDLSRNFLTSIDHLPWKNL---EFLTLDS 208
L+ LDLS+N Q+R P+ +G +HTL L R L + ++ L ++L L
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTL---HLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 209 NLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPI 268
N LQ P T+ NLT+L L GN + + +L L + N+++
Sbjct: 138 NNLQAL-----PDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 269 PECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN 310
P + RL L + NNLS E L SL +L + +N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 124/306 (40%), Gaps = 18/306 (5%)
Query: 255 QVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLS- 313
++LD+G N + + + L L++ N +S P N +L L + +N L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 314 GPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHL 373
P+ + G S L LD+ NK L F L SL++ N L + L
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 374 EVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQF 433
E + + + L L L VL LR I D + + +L+++++S+ +
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLY-RLKVLEISHWPY 212
Query: 434 TGVLPIWYLNGFK----AMMRRDDNSI------EVNYMRSLNYSYYESISLTMKGNDIQM 483
+ L G ++ + ++ + Y+R LN S Y IS T++G+ M
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS-YNPIS-TIEGS---M 267
Query: 484 ERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDL 543
L I L + LN L+ LN+S N LT S ++ LE+L L
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327
Query: 544 SSNKLA 549
SN LA
Sbjct: 328 DSNPLA 333
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 484 ERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDL 543
E I T +DL NR + + L+ L ++ N ++ P + NL L +L L
Sbjct: 28 EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87
Query: 544 SSNKL 548
SN+L
Sbjct: 88 RSNRL 92
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 24/210 (11%)
Query: 244 LPPSL-SNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSL 302
LPP + N L VL + N+LS N+ +L+ L + NNNL + +TSL
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 303 SFLDVGNNSLSGP----IPE-YLGNSTLEVLDM--------RMNKFSGSLPQTFGKSCV- 348
L + +N L+ IP + N + +L ++ S+ G V
Sbjct: 174 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233
Query: 349 LVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFC 408
L LKL N L L+N L +D+ N++ + H + L+ L + +NR
Sbjct: 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 409 G--PIGDTKTRVPFPKLRIIDLSYNQFTGV 436
G P P L+++DLS+N V
Sbjct: 292 ALNLYGQ-----PIPTLKVLDLSHNHLLHV 316
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 120/293 (40%), Gaps = 60/293 (20%)
Query: 254 LQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLS 313
+Q L +G N + P N L+ L + N+LS N+ L+ L + NN+L
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL- 159
Query: 314 GPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRL---EGPLPPSLVNC 370
E + + TF + L +L+L+ NRL + L PSL +
Sbjct: 160 ----ERIEDD------------------TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197
Query: 371 R-------------HLEVIDVGNNQINETF-PHWLDVLPELQVLTLRSNRFCGPIGDTKT 416
+E +D +N IN P V EL +L L+ N + DT
Sbjct: 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNN----LTDTAW 249
Query: 417 RVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTM 476
+ +P L +DLSYN+ ++ + F M R + I N + +LN Y + I T+
Sbjct: 250 LLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVALNL-YGQPIP-TL 303
Query: 477 KGNDIQMERILTTFA---TIDLSSNRFQGEISEVLGKL---NSLKSLNISHNN 523
K D+ +L D N + S V KL ++LK+L +SHN+
Sbjct: 304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 229 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 288
NLTYL L+GN L+ NL+ L + N L T L++L + +N L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 289 SGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMN 333
T+L+ LD+ NN L +PE + + ++ + +N
Sbjct: 146 QSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLN 189
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 200 NLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDV 259
NL+ L L N LQ SLP+ + K NLTYL L N L+ NL LD+
Sbjct: 110 NLKELVLVENQLQ-SLPD----GVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Query: 260 GNNNLSGPIPECLGNS-TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN 310
NN L +PE + + T+L L + +N L TSL+ + + NN
Sbjct: 165 DNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 15/171 (8%)
Query: 383 INETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYL 442
I + FP D E T+++N + D T+ + I + + V I YL
Sbjct: 9 IKQIFPD--DAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL 62
Query: 443 NGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQ-----MERILTTFATIDLSS 497
+ + + +++ ++ L Y L + GN +Q + LT + L
Sbjct: 63 PNVRYLALGGNKLHDISALKELTNLTY----LILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 498 NRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 548
N+ Q V KL +L L + HN L LT L LDL +N+L
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 200 NLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDV 259
NL +L L N LQ SLPN + K NL L L N L+ NL L +
Sbjct: 86 NLTYLILTGNQLQ-SLPN----GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 260 GNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNS-TSLSFLDVGNNSLSGPIPE 318
+N L T L+ LD+ NN L +PE + + T L L + +N L +P+
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKS-VPD 198
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 30/238 (12%)
Query: 229 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 288
N+T L L+ N L + + L LDVG N +S PE L L++++N L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 289 SGPIPECLGNSTSLSFLDVGNNSLSGPIPE-YLGNSTLEVLDMRMNKFSGSLPQTFGKSC 347
S + T+L+ L + +NS+ ++ L LD+ N S + T +
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145
Query: 348 VLVSLKLNGNRLEGPLPPSL--VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR-- 403
L L L+ N+++ L L+ +++ +NQI E P + L L L
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 404 ------SNRFCGPIGDTKTR-------------------VPFPKLRIIDLSYNQFTGV 436
+ + C + +T R + + L ++DLSYN V
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 112/272 (41%), Gaps = 40/272 (14%)
Query: 100 FAKLKNLKYLILSNISLSVST---KLTVNSSFPNLWALGLSACNISEFP-DILKTQHQLD 155
F L NLKYL LSN S+ T + V+ + L L L+ IS+ D L+
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408
Query: 156 WLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSL 215
LDL N+I + W G+ +F + LS N K L+ LT +S L SL
Sbjct: 409 VLDLGLNEIGQELTGQEWR-GLENIFEIYLSYN----------KYLQ-LTRNSFALVPSL 456
Query: 216 PNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNS 275
L K + + P P NL +LD+ NNN++ + L
Sbjct: 457 QRLMLRRVALKNVDSS---------PSPFQP----LRNLTILDLSNNNIANINDDMLEGL 503
Query: 276 TRLSFLDVRNNNLS---------GPIPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTL 325
+L LD+++NNL+ GPI G S L L++ +N P+ + L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFEL 562
Query: 326 EVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGN 357
+++D+ +N + F L SL L N
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 30/238 (12%)
Query: 229 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 288
N+T L L+ N L + + L LDVG N +S PE L L++++N L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 289 SGPIPECLGNSTSLSFLDVGNNSLSGPIPE-YLGNSTLEVLDMRMNKFSGSLPQTFGKSC 347
S + T+L+ L + +NS+ ++ L LD+ N S + T +
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 155
Query: 348 VLVSLKLNGNRLEGPLPPSL--VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR-- 403
L L L+ N+++ L L+ +++ +NQI E P + L L L
Sbjct: 156 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 215
Query: 404 ------SNRFCGPIGDTKTR-------------------VPFPKLRIIDLSYNQFTGV 436
+ + C + +T R + + L ++DLSYN V
Sbjct: 216 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 273
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 112/272 (41%), Gaps = 40/272 (14%)
Query: 100 FAKLKNLKYLILSNISLSVST---KLTVNSSFPNLWALGLSACNISEFP-DILKTQHQLD 155
F L NLKYL LSN S+ T + V+ + L L L+ IS+ D L+
Sbjct: 359 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 418
Query: 156 WLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSL 215
LDL N+I + W G+ +F + LS N K L+ LT +S L SL
Sbjct: 419 VLDLGLNEIGQELTGQEWR-GLENIFEIYLSYN----------KYLQ-LTRNSFALVPSL 466
Query: 216 PNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNS 275
L K + + P P NL +LD+ NNN++ + L
Sbjct: 467 QRLMLRRVALKNVDSS---------PSPFQP----LRNLTILDLSNNNIANINDDMLEGL 513
Query: 276 TRLSFLDVRNNNLS---------GPIPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTL 325
+L LD+++NNL+ GPI G S L L++ +N P+ + L
Sbjct: 514 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFEL 572
Query: 326 EVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGN 357
+++D+ +N + F L SL L N
Sbjct: 573 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 30/238 (12%)
Query: 229 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 288
N+T L L+ N L + + L LDVG N +S PE L L++++N L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 289 SGPIPECLGNSTSLSFLDVGNNSLSGPIPE-YLGNSTLEVLDMRMNKFSGSLPQTFGKSC 347
S + T+L+ L + +NS+ ++ L LD+ N S + T +
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 150
Query: 348 VLVSLKLNGNRLEGPLPPSL--VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR-- 403
L L L+ N+++ L L+ +++ +NQI E P + L L L
Sbjct: 151 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 210
Query: 404 ------SNRFCGPIGDTKTR-------------------VPFPKLRIIDLSYNQFTGV 436
+ + C + +T R + + L ++DLSYN V
Sbjct: 211 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 268
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 112/272 (41%), Gaps = 40/272 (14%)
Query: 100 FAKLKNLKYLILSNISLSVST---KLTVNSSFPNLWALGLSACNISEFP-DILKTQHQLD 155
F L NLKYL LSN S+ T + V+ + L L L+ IS+ D L+
Sbjct: 354 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 413
Query: 156 WLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSL 215
LDL N+I + W G+ +F + LS N K L+ LT +S L SL
Sbjct: 414 VLDLGLNEIGQELTGQEWR-GLENIFEIYLSYN----------KYLQ-LTRNSFALVPSL 461
Query: 216 PNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNS 275
L K + + P P NL +LD+ NNN++ + L
Sbjct: 462 QRLMLRRVALKNVDSS---------PSPFQP----LRNLTILDLSNNNIANINDDMLEGL 508
Query: 276 TRLSFLDVRNNNLS---------GPIPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTL 325
+L LD+++NNL+ GPI G S L L++ +N P+ + L
Sbjct: 509 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFEL 567
Query: 326 EVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGN 357
+++D+ +N + F L SL L N
Sbjct: 568 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 343 FGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTL 402
FG+ LV L+L N+L G P + H++ + +G N+I E L +L+ L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 403 RSNRF 407
N+
Sbjct: 110 YDNQI 114
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 493 IDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 546
+ L N+ + +++ L+ LK+LN+ N ++ +P S +L L SL+L+SN
Sbjct: 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 84/227 (37%), Gaps = 38/227 (16%)
Query: 352 LKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPI 411
L L N ++ + + RHLE++ + N + + + LP L L L NR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL--TT 97
Query: 412 GDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSI-------EVNYMRSL 464
T+ KLR + L N + P + N ++ R D + E + +
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 465 NYSYYESISLTMKGNDIQMERILTTFATIDLSSNR--------FQGEIS----------- 505
N Y +K DI L ++LS NR FQG S
Sbjct: 157 NLRYLNLGMCNLK--DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 506 -----EVLGKLNSLKSLNISHNNLTGGIPSSLRN-LTELESLDLSSN 546
L SL+ LN+SHNNL +P L L LE + L+ N
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHN 260
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 349 LVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF- 407
+ L L+GN+ +P L N +HL +ID+ NN+I+ + +L L L NR
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 408 CGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAM 448
C P +T LR++ L N + V+P N A+
Sbjct: 92 CIP---PRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSAL 128
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 229 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 288
++T L L GN +P LSN +L ++D+ NN +S + N T+L L + N L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 289 SGPIPECLGNSTSLSFLDVGNNSLSGPIPE 318
P SL L + N +S +PE
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 81/226 (35%), Gaps = 36/226 (15%)
Query: 352 LKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPI 411
L L N ++ + + RHLE++ + N + + + LP L L L NR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL--TT 97
Query: 412 GDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSI-------EVNYMRSL 464
T+ KLR + L N + P + N ++ R D + E + +
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 465 NYSYYESISLTMKGNDIQMERILTTFATIDLSSNR--------FQGEIS----------- 505
N Y +K DI L ++LS NR FQG S
Sbjct: 157 NLRYLNLGMCNLK--DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 506 -----EVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 546
L SL+ LN+SHNNL L LE + L+ N
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|4APL|A Chain A, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|B Chain B, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|D Chain D, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|E Chain E, Crystal Structure Of Ama1 From Neospora Caninum
Length = 431
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 288 LSGPIPECL-GNSTSLSFLDVGNNSLSGPIPEYLGNSTLEV----LDMRMNKFSGSLPQT 342
LS P+CL +S ++S+ +G SLS P+ + S V D + S P+T
Sbjct: 327 LSHKAPDCLVSDSKAVSYTALG--SLSEETPDIIIPSNPSVNPSTPDEALQCRSSEFPET 384
Query: 343 FGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 388
FG V + + + G + + V+C E D G+N P
Sbjct: 385 FGSCDVQACKRQKTSCVGGQIQSTSVDCTAEEQNDCGSNTAAALVP 430
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 37/211 (17%)
Query: 135 GLSACNISEFPDILKTQHQLDWLDLSENQIRGR----------IPS------WMWDIGVH 178
G++A N + D++ ++ L LDLS N++ +PS W+W+ +
Sbjct: 206 GITAANCKDLCDVVASKASLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDIT 265
Query: 179 TLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGN 238
DL R ++L+ L+L SN L+ L GC L L +
Sbjct: 266 AEGCKDLCRVLRAK------QSLKELSLASNELKDEGARLLCESLLEPGCQLESLWIKTC 319
Query: 239 HLEGPLPPSLSNCV-------NLQVL-----DVGNNNLSGPI--PECLGNSTRLSFLDVR 284
L P + + LQ+ D G L + P+ + L DV
Sbjct: 320 SLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQELCKALSQPDTVLRELWLGDCDVT 379
Query: 285 NNNLSGPIPECLGNSTSLSFLDVGNNSLSGP 315
N+ S L N SL LD+ NN + GP
Sbjct: 380 NSGCSSLANVLLANR-SLRELDLSNNCMGGP 409
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 18/208 (8%)
Query: 234 RLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 293
+++ + L+ L + N++ LD+ N LS L T+L L++ +N L +
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75
Query: 294 ECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSG-SLPQTFGKSCVLVSL 352
L + ++L LD+ NN + E L ++E L N S S + GK ++
Sbjct: 76 --LESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISRVSCSRGQGKK----NI 125
Query: 353 KLNGNRLEGPLPPSLVNCR-HLEVIDVGNNQINET-FPHWLDVLPELQVLTLRSNRFCGP 410
L N++ L CR ++ +D+ N+I+ F L+ L L+ N
Sbjct: 126 YLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----F 180
Query: 411 IGDTKTRVPFPKLRIIDLSYNQFTGVLP 438
I D K +V F KL+ +DLS N+ + P
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGP 208
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 348 VLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 407
++ L L+ NRL LPP+L R LEV+ +N + + LP LQ L L +NR
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520
Query: 408 CGPIGDTKTRVPFPKLRIIDLSYN 431
+ V P+L +++L N
Sbjct: 521 -QQSAAIQPLVSCPRLVLLNLQGN 543
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 348 VLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 407
++ L L+ NRL LPP+L R LEV+ +N + + LP LQ L L +NR
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520
Query: 408 CGPIGDTKTRVPFPKLRIIDLSYN 431
+ V P+L +++L N
Sbjct: 521 -QQSAAIQPLVSCPRLVLLNLQGN 543
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 18/221 (8%)
Query: 221 HMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSF 280
H G +++ + L+ L + N++ LD+ N LS L T+L
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 281 LDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSG-SL 339
L++ +N L + L + ++L LD+ NN + E L ++E L N S S
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISRVSC 116
Query: 340 PQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCR-HLEVIDVGNNQINET-FPHWLDVLPEL 397
+ GK + ++ N++ L CR ++ +D+ N+I+ F L
Sbjct: 117 SRGQGKKNIYLA----NNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 398 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLP 438
+ L L+ N I D K +V F KL+ +DLS N+ + P
Sbjct: 172 EHLNLQYN----FIYDVKGQVVFAKLKTLDLSSNKLAFMGP 208
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 311 SLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNC 370
SL P N+ ++ + + +LP+T + ++L N ++ P +
Sbjct: 2 SLHCPAACTCSNNIVDCRGKGLTEIPTNLPET------ITEIRLEQNTIKVIPPGAFSPY 55
Query: 371 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 407
+ L ID+ NNQI+E P L L L L N+
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 311 SLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNC 370
SL P N+ ++ + + +LP+T + ++L N ++ P +
Sbjct: 2 SLHCPAACTCSNNIVDCRGKGLTEIPTNLPET------ITEIRLEQNTIKVIPPGAFSPY 55
Query: 371 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 407
+ L ID+ NNQI+E P L L L L N+
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 155/394 (39%), Gaps = 73/394 (18%)
Query: 214 SLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGN---NNLSGPIPE 270
S ++P +T A + L LS N + L C NLQVL + + N + G
Sbjct: 42 SFTSIPSGLTAA----MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY 97
Query: 271 CLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN-----SLSGPIPEYLGNSTL 325
LG+ L LD+ +N+LS G +SL +L++ N ++ P TL
Sbjct: 98 SLGS---LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 154
Query: 326 EVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINE 385
+ + + FS F L L++ L SL + R + + + ++
Sbjct: 155 RIGN--VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 212
Query: 386 TFPHWLDVLPELQVLTLRSN---RF-CGPIGDTKTRVPFPKLR-----IIDLSYNQFTGV 436
+ D+L ++ L LR RF P+ + P KL + D S+N+ +
Sbjct: 213 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 272
Query: 437 LPI-----------WYLNGF------KAMMRRDDNSIEVNYMRSLN----YSYYE---SI 472
L LNG ++ + + +E +R L+ Y +Y+
Sbjct: 273 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 332
Query: 473 SLTMKGNDIQME------------RILTTFATIDLSSNRFQGEI---SEVLGKLNSLKSL 517
SL K I +E + L + +DLS N E S G SL++L
Sbjct: 333 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 392
Query: 518 NISHNNL-----TGGIPSSLRNLTELESLDLSSN 546
+S N+L TG I +L+NLT SLD+S N
Sbjct: 393 VLSQNHLRSMQKTGEILLTLKNLT---SLDISRN 423
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 143 EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLE 202
EFP+I + E +I+ + D + FRL ++R + +++HL W N E
Sbjct: 5 EFPEITEEM---------EKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDE 55
Query: 203 FLTLDSNLL 211
+ N+L
Sbjct: 56 IINFYMNML 64
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 143 EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLE 202
EFP+I + E +I+ + D + FRL ++R + +++HL W N E
Sbjct: 1 EFPEITEEM---------EKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDE 51
Query: 203 FLTLDSNLL 211
+ N+L
Sbjct: 52 IINFYMNML 60
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 143 EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLE 202
EFP+I + E +I+ + D + FRL ++R + +++HL W N E
Sbjct: 1 EFPEITEEM---------EKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDE 51
Query: 203 FLTLDSNLL 211
+ N+L
Sbjct: 52 IINFYMNML 60
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 143 EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLE 202
EFP+I + E +I+ + D + FRL ++R + +++HL W N E
Sbjct: 1 EFPEITEEM---------EKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDE 51
Query: 203 FLTLDSNLL 211
+ N+L
Sbjct: 52 IINFYMNML 60
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 492 TIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAG 550
++LSSN G + L +K L++ HNN IP + +L L+ L+++SN+L
Sbjct: 432 VLNLSSNMLTGSVFRCLPP--KVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKS 487
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 155/394 (39%), Gaps = 73/394 (18%)
Query: 214 SLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGN---NNLSGPIPE 270
S ++P +T A + L LS N + L C NLQVL + + N + G
Sbjct: 16 SFTSIPSGLTAA----MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY 71
Query: 271 CLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN-----SLSGPIPEYLGNSTL 325
LG+ L LD+ +N+LS G +SL +L++ N ++ P TL
Sbjct: 72 SLGS---LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Query: 326 EVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINE 385
+ ++ FS F L L++ L SL + R + + + ++
Sbjct: 129 RIGNVET--FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186
Query: 386 TFPHWLDVLPELQVLTLRSN---RF-CGPIGDTKTRVPFPKLR-----IIDLSYNQFTGV 436
+ D+L ++ L LR RF P+ + P KL + D S+N+ +
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246
Query: 437 LPI-----------WYLNGF------KAMMRRDDNSIEVNYMRSLN----YSYYE---SI 472
L LNG ++ + + +E +R L+ Y +Y+
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306
Query: 473 SLTMKGNDIQME------------RILTTFATIDLSSNRFQGEI---SEVLGKLNSLKSL 517
SL K I +E + L + +DLS N E S G SL++L
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366
Query: 518 NISHNNL-----TGGIPSSLRNLTELESLDLSSN 546
+S N+L TG I +L+NLT SLD+S N
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLT---SLDISRN 397
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 487 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 546
L +I+ SN+ + + GK+ LK LN++ N L LT L+ + L +N
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 43/234 (18%)
Query: 142 SEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNL 201
EFP+I + E +I+ + D + FRL ++R + +++HL W N
Sbjct: 12 DEFPEITEEM---------EKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLND 62
Query: 202 EFLTLDSNLL-----QGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQV 256
E + N+L + LP++ T+ T L+ +G + V++
Sbjct: 63 EIINFYMNMLMERSKEKGLPSVHAFNTFF----FTKLKTAGYQ----AVKRWTKKVDVFS 114
Query: 257 LDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPI 316
+D+ L PI LG L+ +D R N+ T + NN +
Sbjct: 115 VDI----LLVPIH--LGVHWCLAVVDFRKKNI-----------TYYDSMGGINNEACRIL 157
Query: 317 PEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNC 370
+YL E +D + +F + Q F K + ++NG+ G +C
Sbjct: 158 LQYLKQ---ESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDC-GMFACKYADC 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,939,011
Number of Sequences: 62578
Number of extensions: 852487
Number of successful extensions: 2864
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1972
Number of HSP's gapped (non-prelim): 457
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)