Query 005542
Match_columns 691
No_of_seqs 731 out of 5029
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 01:06:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-62 2.3E-67 583.8 42.1 552 3-600 50-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.9E-57 4.2E-62 538.8 40.9 522 32-597 55-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.3E-37 2.9E-42 313.4 8.9 396 131-600 54-456 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 1E-40 2.2E-45 322.0 -14.9 436 70-573 82-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.2E-37 2.7E-42 313.6 6.4 396 16-436 48-454 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 1.9E-38 4.1E-43 306.3 -9.3 445 38-549 63-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 6.7E-35 1.5E-39 309.4 -2.5 424 80-571 46-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 8.3E-35 1.8E-39 308.7 -3.2 483 48-596 3-489 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.5E-33 3.2E-38 286.0 -3.3 385 42-568 6-394 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2E-31 4.4E-36 270.5 -1.3 363 132-577 10-379 (1255)
11 PLN03210 Resistant to P. syrin 99.9 8.3E-23 1.8E-27 243.0 28.1 340 145-547 551-904 (1153)
12 KOG4237 Extracellular matrix p 99.9 3.3E-25 7E-30 214.8 -0.0 145 2-165 28-177 (498)
13 PLN03210 Resistant to P. syrin 99.9 7.7E-22 1.7E-26 234.8 25.1 339 41-407 556-905 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 2.7E-21 5.9E-26 213.3 18.0 173 229-434 223-395 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 2.6E-21 5.7E-26 213.5 16.9 264 44-391 202-465 (788)
16 KOG4237 Extracellular matrix p 99.9 1.3E-23 2.8E-28 203.8 -2.5 404 129-570 67-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 2.9E-19 6.2E-24 198.9 13.3 245 230-549 180-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 3.2E-19 6.8E-24 198.6 12.2 246 105-384 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.6E-19 5.6E-24 185.6 -0.1 282 232-572 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 6.2E-19 1.3E-23 182.7 1.5 281 203-548 2-319 (319)
21 KOG0617 Ras suppressor protein 99.6 2.1E-17 4.5E-22 142.7 -4.0 155 345-549 31-186 (264)
22 PLN03150 hypothetical protein; 99.6 2.9E-15 6.2E-20 166.7 10.9 118 489-606 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 3.4E-17 7.5E-22 141.4 -6.2 157 227-410 32-188 (264)
24 PLN03150 hypothetical protein; 99.3 1.6E-11 3.4E-16 137.0 11.9 113 422-577 419-532 (623)
25 COG4886 Leucine-rich repeat (L 99.2 5.7E-11 1.2E-15 126.7 8.1 177 129-318 116-295 (394)
26 KOG3207 Beta-tubulin folding c 99.2 1.3E-11 2.7E-16 122.9 2.7 159 41-212 119-284 (505)
27 KOG0532 Leucine-rich repeat (L 99.1 3.3E-12 7.3E-17 130.7 -5.2 192 201-406 77-271 (722)
28 KOG3207 Beta-tubulin folding c 99.1 2.2E-11 4.7E-16 121.2 0.6 159 101-265 118-284 (505)
29 KOG1259 Nischarin, modulator o 99.1 2.8E-11 6.1E-16 114.3 1.1 87 487-576 328-415 (490)
30 KOG1909 Ran GTPase-activating 99.1 7.6E-12 1.6E-16 121.1 -3.0 251 41-313 28-311 (382)
31 COG4886 Leucine-rich repeat (L 99.1 2.8E-10 6E-15 121.4 7.7 197 83-296 97-297 (394)
32 PF14580 LRR_9: Leucine-rich r 99.0 1.6E-10 3.4E-15 105.4 4.3 108 41-166 17-127 (175)
33 KOG1909 Ran GTPase-activating 99.0 2.3E-11 5E-16 117.8 -1.3 61 488-548 241-310 (382)
34 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.8E-16 126.4 -3.2 174 133-320 79-253 (722)
35 KOG1259 Nischarin, modulator o 99.0 6E-11 1.3E-15 112.2 -0.3 126 178-313 284-412 (490)
36 PF14580 LRR_9: Leucine-rich r 99.0 5.1E-10 1.1E-14 102.1 5.6 124 74-205 14-146 (175)
37 KOG4658 Apoptotic ATPase [Sign 99.0 5.6E-10 1.2E-14 127.1 6.7 129 42-189 522-653 (889)
38 PF13855 LRR_8: Leucine rich r 98.8 1.9E-09 4.2E-14 80.6 3.1 59 489-547 2-60 (61)
39 PF13855 LRR_8: Leucine rich r 98.8 1.3E-09 2.9E-14 81.6 2.2 61 512-572 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.8 4.5E-10 9.8E-15 119.9 -1.7 85 490-577 234-322 (414)
41 KOG0531 Protein phosphatase 1, 98.8 7.2E-10 1.6E-14 118.4 -0.7 241 78-339 71-321 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.7 1.6E-08 3.5E-13 115.4 6.0 294 227-578 544-847 (889)
43 KOG2120 SCF ubiquitin ligase, 98.4 6.4E-09 1.4E-13 98.7 -5.7 159 80-264 186-350 (419)
44 KOG2120 SCF ubiquitin ligase, 98.3 1.7E-08 3.6E-13 95.9 -5.6 59 509-569 310-372 (419)
45 KOG2982 Uncharacterized conser 98.3 1E-07 2.2E-12 90.7 -1.2 105 103-209 44-156 (418)
46 KOG1859 Leucine-rich repeat pr 98.3 4.2E-08 9.1E-13 103.8 -4.7 191 251-452 83-285 (1096)
47 KOG4579 Leucine-rich repeat (L 98.2 4.7E-08 1E-12 82.2 -4.6 83 489-573 54-136 (177)
48 KOG1859 Leucine-rich repeat pr 98.2 1.7E-08 3.7E-13 106.8 -9.6 125 253-383 165-291 (1096)
49 KOG2982 Uncharacterized conser 98.1 1.7E-06 3.6E-11 82.6 3.3 204 324-568 72-287 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.1 3.6E-07 7.7E-12 85.9 -1.5 39 42-88 29-67 (388)
51 KOG1644 U2-associated snRNP A' 98.1 4.3E-06 9.2E-11 75.6 5.0 117 32-163 31-151 (233)
52 PF12799 LRR_4: Leucine Rich r 98.0 6.9E-06 1.5E-10 56.1 3.5 36 44-92 2-37 (44)
53 COG5238 RNA1 Ran GTPase-activa 97.9 2.4E-06 5.2E-11 80.5 -0.5 215 42-265 57-316 (388)
54 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.4E-10 53.4 4.3 37 129-165 1-37 (44)
55 KOG4579 Leucine-rich repeat (L 97.8 2.4E-06 5.2E-11 72.1 -2.1 83 490-575 29-115 (177)
56 PRK15386 type III secretion pr 97.8 7.7E-05 1.7E-09 76.8 8.2 77 343-433 48-124 (426)
57 PRK15386 type III secretion pr 97.7 0.0002 4.3E-09 73.8 10.6 16 100-115 48-63 (426)
58 KOG3665 ZYG-1-like serine/thre 97.7 2.5E-05 5.4E-10 87.4 3.3 111 128-243 147-265 (699)
59 KOG1644 U2-associated snRNP A' 97.6 0.00013 2.9E-09 66.2 5.9 85 347-434 42-126 (233)
60 KOG3665 ZYG-1-like serine/thre 97.3 7.1E-05 1.5E-09 83.8 1.3 137 43-194 122-266 (699)
61 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.3E-09 68.7 2.4 88 76-166 40-130 (260)
62 KOG4341 F-box protein containi 97.2 1.3E-05 2.8E-10 80.3 -5.8 111 298-408 318-439 (483)
63 KOG4341 F-box protein containi 97.1 4.3E-05 9.4E-10 76.7 -2.8 296 44-354 139-459 (483)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00042 9E-09 65.9 3.4 112 31-160 34-151 (260)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0033 7.2E-08 55.0 6.8 80 227-309 11-90 (129)
66 PF13306 LRR_5: Leucine rich r 96.7 0.0047 1E-07 54.0 7.1 59 247-307 7-65 (129)
67 KOG2123 Uncharacterized conser 96.5 9.4E-05 2E-09 70.3 -5.4 60 77-139 39-98 (388)
68 KOG2123 Uncharacterized conser 96.0 0.00069 1.5E-08 64.6 -2.9 88 78-171 18-107 (388)
69 PF00560 LRR_1: Leucine Rich R 95.5 0.0051 1.1E-07 34.8 0.6 11 515-525 3-13 (22)
70 PF00560 LRR_1: Leucine Rich R 95.2 0.0065 1.4E-07 34.4 0.3 19 538-557 2-20 (22)
71 KOG1947 Leucine rich repeat pr 94.2 0.0095 2.1E-07 65.4 -1.2 128 77-206 186-328 (482)
72 KOG1947 Leucine rich repeat pr 94.0 0.0071 1.5E-07 66.4 -2.7 16 367-382 358-373 (482)
73 PF13504 LRR_7: Leucine rich r 92.9 0.076 1.6E-06 27.8 1.6 15 130-144 2-16 (17)
74 KOG0473 Leucine-rich repeat pr 92.7 0.0057 1.2E-07 57.0 -4.8 84 487-573 41-124 (326)
75 KOG4308 LRR-containing protein 92.4 0.0011 2.5E-08 71.0 -11.5 37 300-336 262-303 (478)
76 PF13504 LRR_7: Leucine rich r 92.0 0.1 2.2E-06 27.3 1.4 12 80-91 2-13 (17)
77 KOG4308 LRR-containing protein 91.3 0.00078 1.7E-08 72.3 -14.3 38 154-191 89-128 (478)
78 smart00370 LRR Leucine-rich re 90.0 0.29 6.3E-06 28.8 2.2 21 79-100 2-22 (26)
79 smart00369 LRR_TYP Leucine-ric 90.0 0.29 6.3E-06 28.8 2.2 21 79-100 2-22 (26)
80 smart00370 LRR Leucine-rich re 89.0 0.35 7.7E-06 28.4 2.1 16 536-551 2-17 (26)
81 smart00369 LRR_TYP Leucine-ric 89.0 0.35 7.7E-06 28.4 2.1 16 536-551 2-17 (26)
82 KOG3864 Uncharacterized conser 84.6 0.15 3.2E-06 46.9 -1.9 81 324-404 102-185 (221)
83 KOG0473 Leucine-rich repeat pr 82.7 0.027 5.9E-07 52.6 -7.5 87 74-165 37-124 (326)
84 PF13516 LRR_6: Leucine Rich r 82.2 0.51 1.1E-05 27.1 0.4 15 489-503 3-17 (24)
85 KOG4242 Predicted myosin-I-bin 74.0 11 0.00024 39.7 7.2 19 43-61 165-183 (553)
86 KOG3864 Uncharacterized conser 73.2 1.2 2.7E-05 41.1 0.3 79 373-451 103-181 (221)
87 PF08693 SKG6: Transmembrane a 72.1 2.6 5.7E-05 27.6 1.5 19 633-651 14-32 (40)
88 smart00365 LRR_SD22 Leucine-ri 71.0 3.8 8.2E-05 24.2 1.9 15 535-549 1-15 (26)
89 KOG4242 Predicted myosin-I-bin 68.9 21 0.00046 37.7 7.9 17 422-438 355-371 (553)
90 smart00364 LRR_BAC Leucine-ric 64.5 5 0.00011 23.6 1.5 13 44-56 3-15 (26)
91 smart00368 LRR_RI Leucine rich 64.5 5.3 0.00011 24.0 1.7 13 44-56 3-15 (28)
92 KOG3763 mRNA export factor TAP 61.1 5.7 0.00012 42.6 2.3 36 178-213 244-284 (585)
93 KOG3763 mRNA export factor TAP 55.5 5.6 0.00012 42.7 1.1 63 103-166 217-284 (585)
94 PF03302 VSP: Giardia variant- 54.9 5.8 0.00013 41.9 1.2 25 631-655 367-391 (397)
95 PTZ00382 Variant-specific surf 52.9 5.6 0.00012 32.4 0.6 20 634-653 69-88 (96)
96 TIGR00864 PCC polycystin catio 50.3 9.9 0.00021 49.0 2.3 32 518-549 1-32 (2740)
97 COG3105 Uncharacterized protei 33.6 25 0.00054 29.8 1.4 20 636-655 9-28 (138)
98 PF01102 Glycophorin_A: Glycop 31.9 20 0.00042 30.6 0.6 7 640-646 71-77 (122)
99 smart00367 LRR_CC Leucine-rich 31.3 32 0.0007 20.0 1.3 12 79-90 2-13 (26)
100 COG3105 Uncharacterized protei 29.6 20 0.00044 30.3 0.3 27 629-655 6-32 (138)
101 PF04478 Mid2: Mid2 like cell 29.5 20 0.00043 31.6 0.3 9 633-641 51-59 (154)
102 PRK11677 hypothetical protein; 29.3 21 0.00045 31.1 0.3 15 640-654 8-22 (134)
103 PRK11677 hypothetical protein; 25.0 46 0.001 28.9 1.7 24 631-654 3-26 (134)
104 PF06295 DUF1043: Protein of u 24.5 39 0.00085 29.2 1.2 13 641-653 5-17 (128)
105 PF06295 DUF1043: Protein of u 22.4 50 0.0011 28.6 1.4 22 633-654 1-22 (128)
106 PF04971 Lysis_S: Lysis protei 20.8 88 0.0019 23.4 2.2 15 634-648 34-48 (68)
107 PF03672 UPF0154: Uncharacteri 20.8 54 0.0012 24.3 1.1 14 640-653 5-18 (64)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-62 Score=583.80 Aligned_cols=552 Identities=32% Similarity=0.480 Sum_probs=446.8
Q ss_pred cccccccccCCCCCCCcCc-ceeeeeeeec-cCCcc-cCCCCCCCCcEEECcCCcccccCCCCCCCCccccCCcccc-CC
Q 005542 3 TKTAYIDVCDDTSNSQPAK-SFEVKAITAN-IPAVT-SEGIYPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIF-EL 78 (691)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~-~~~~~~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~-~l 78 (691)
.|..+.++|.|.+.+|... .+....+.++ +.... .....+++|++|||++|+++|.+| ..+. .+
T Consensus 50 ~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip------------~~~~~~l 117 (968)
T PLN00113 50 NWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP------------DDIFTTS 117 (968)
T ss_pred CCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCC------------hHHhccC
Confidence 4666788999998887642 2222222221 11111 112257899999999998875544 5554 78
Q ss_pred CCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeeccCCC-CCCCccEEEccCCCCC-CchhhhhCCCCCCE
Q 005542 79 VNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNIS-EFPDILKTQHQLDW 156 (691)
Q Consensus 79 ~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 156 (691)
++|++|+|++|.+++.+| ...+++|++|+|++|. ..+..|... .+++|++|++++|.+. .+|..+.++++|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~--~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNM--LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCEEECcCCccccccC---ccccCCCCEEECcCCc--ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 889999998888887777 2557888899998888 445555433 5888899999888886 67888888888999
Q ss_pred EEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCC---CCCCCcCEEeccCccCcccCCCCCCcccccCCCCccEE
Q 005542 157 LDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYL 233 (691)
Q Consensus 157 L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L 233 (691)
|++++|.+.+.+|..+..+ ++|++|++++|.+.+..+ ..+++|++|++++|.+.+.+|..+.. +++|++|
T Consensus 193 L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L 265 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQM--KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-----LKNLQYL 265 (968)
T ss_pred eeccCCCCcCcCChHHcCc--CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-----CCCCCEE
Confidence 9998888888888888877 888889988888887666 46788888889888888888877766 7788888
Q ss_pred EccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEEccCcccc
Q 005542 234 RLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLS 313 (691)
Q Consensus 234 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 313 (691)
++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccccchhhcc-CCCeEEccCCcccccCCccccCCCCccEEEccCCcccCCCCccccCCCCccEEEccCCCCCcCcchhhc
Q 005542 314 GPIPEYLGNS-TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLD 392 (691)
Q Consensus 314 ~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 392 (691)
+.+|..+... +|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..+.
T Consensus 346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 8887766543 888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhcccccccccCCccccccccccccccceee
Q 005542 393 VLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESI 472 (691)
Q Consensus 393 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 472 (691)
.++.|+.|++++|.+++.++... ..+++|+.|++++|++.+.+|..+ ....+..++...+.+..
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~------------ 489 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSG------------ 489 (968)
T ss_pred cCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCC------------
Confidence 88888888888888888777655 567888888888888888877542 23444444443332210
Q ss_pred EEEecCCchhhhhhcccccEEEccCCcccccCChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCcCCCcC
Q 005542 473 SLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRI 552 (691)
Q Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 552 (691)
........+++|+.|+|++|.+.+.+|..+.++++|++|+|++|.+++.+|..++.+++|+.|+|++|++++.+
T Consensus 490 ------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 490 ------AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred ------ccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence 00111233788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCEEEccCCeeeccCCCCCCCCccCCcccCCCCCCCCCC
Q 005542 553 PTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGIDSYSGNVGLCGFP 600 (691)
Q Consensus 553 p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~ 600 (691)
|..+..+++|+.|++++|+++|.+|...++.++...+|.||+.+||.+
T Consensus 564 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-57 Score=538.81 Aligned_cols=522 Identities=32% Similarity=0.435 Sum_probs=461.6
Q ss_pred cCCcccCCCCCC---CCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCccCccccChhhhcCCCCCCE
Q 005542 32 IPAVTSEGIYPG---QLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 108 (691)
Q Consensus 32 ~~~~~~~~~~~~---~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~ 108 (691)
...|.|.|+.|. +++.|||++|+++|. +|..+..+++|++|+|++|.+.|.+|...+..+++|++
T Consensus 55 ~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~------------~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~ 122 (968)
T PLN00113 55 ADVCLWQGITCNNSSRVVSIDLSGKNISGK------------ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122 (968)
T ss_pred CCCCcCcceecCCCCcEEEEEecCCCcccc------------CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCE
Confidence 345778888774 799999999988754 45788999999999999999998999666669999999
Q ss_pred EEccCCCceeeeeccCCCCCCCccEEEccCCCCC-CchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCC
Q 005542 109 LILSNISLSVSTKLTVNSSFPNLWALGLSACNIS-EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSR 187 (691)
Q Consensus 109 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~ 187 (691)
|+|++|. ..+.+|. ..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.++ ++|++|++++
T Consensus 123 L~Ls~n~--l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~ 197 (968)
T PLN00113 123 LNLSNNN--FTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL--TSLEFLTLAS 197 (968)
T ss_pred EECcCCc--cccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhC--cCCCeeeccC
Confidence 9999999 4555554 35899999999999998 779999999999999999999999999999988 9999999999
Q ss_pred CcCCccCC---CCCCCcCEEeccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcC
Q 005542 188 NFLTSIDH---LPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNL 264 (691)
Q Consensus 188 n~l~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 264 (691)
|.+.+..+ ..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-----LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-----CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 99998777 56789999999999999999988777 88999999999999999999999999999999999999
Q ss_pred CCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEEccCccccccccchhhc-cCCCeEEccCCcccccCCccc
Q 005542 265 SGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTF 343 (691)
Q Consensus 265 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~ 343 (691)
.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+.. .+|+.|++++|.+.+.+|..+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 9999999999999999999999999999999999999999999999999988876654 499999999999999999999
Q ss_pred cCCCCccEEEccCCcccCCCCccccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCc
Q 005542 344 GKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKL 423 (691)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 423 (691)
..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+|..+ ..++.|
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L 430 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLV 430 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH--hcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888776 678999
Q ss_pred cEEEcCCCcCccCCChHhhhcccccccccCCccccccccccccccceeeEEEecCCchhhhhhcccccEEEccCCccccc
Q 005542 424 RIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGE 503 (691)
Q Consensus 424 ~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 503 (691)
+.|++++|.+++.+|.. +..+..|..++...+.+... .. . ....++|+.||+++|++++.
T Consensus 431 ~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~--~p----------------~-~~~~~~L~~L~ls~n~l~~~ 490 (968)
T PLN00113 431 YFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGG--LP----------------D-SFGSKRLENLDLSRNQFSGA 490 (968)
T ss_pred CEEECcCCcccCccChh-hccCCCCcEEECcCceeeee--cC----------------c-ccccccceEEECcCCccCCc
Confidence 99999999999988865 34566666666554432100 00 0 00146899999999999999
Q ss_pred CChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCcCCCcCcccccCCCCCCEEEccCCeeeccCCCCC-CC
Q 005542 504 ISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGP-QF 582 (691)
Q Consensus 504 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~-~~ 582 (691)
+|..+..+++|+.|+|++|.+++.+|+.++++++|++|+|++|++++.+|..+..+++|+.|++++|+++|.+|... .+
T Consensus 491 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 570 (968)
T PLN00113 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570 (968)
T ss_pred cChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999652 23
Q ss_pred CccCCcccCCCCCCC
Q 005542 583 NTFGIDSYSGNVGLC 597 (691)
Q Consensus 583 ~~~~~~~~~gn~~lc 597 (691)
..+....+.+|+..+
T Consensus 571 ~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 571 ESLVQVNISHNHLHG 585 (968)
T ss_pred cccCEEeccCCccee
Confidence 334444555666544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-37 Score=313.38 Aligned_cols=396 Identities=22% Similarity=0.230 Sum_probs=240.5
Q ss_pred ccEEEccCCCCCCch-hhhhC--CCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCCCCCCCcCEEecc
Q 005542 131 LWALGLSACNISEFP-DILKT--QHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLD 207 (691)
Q Consensus 131 L~~L~L~~n~l~~lp-~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~ 207 (691)
-+.|+.+++.+..+. ..+.. .+.-+.||+++|++....+..|.++ ++|+++++.+|.++.++.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl--~nLq~v~l~~N~Lt~IP~------------ 119 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNL--PNLQEVNLNKNELTRIPR------------ 119 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcC--Ccceeeeeccchhhhccc------------
Confidence 345566666665431 11111 1234456777776665555656555 666666666665554433
Q ss_pred CccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCc
Q 005542 208 SNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNN 287 (691)
Q Consensus 208 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 287 (691)
.... ..+++.|+|.+|.|+..-.+.++.++.|+.|||+.|.++.+.-..|..-.++++|+|++|+
T Consensus 120 ----------f~~~-----sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 120 ----------FGHE-----SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR 184 (873)
T ss_pred ----------cccc-----ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc
Confidence 2222 2345555555555554444455555555555555555554433444444555555555555
Q ss_pred ccccCcccccCCCCCcEEEccCccccccccchhh-ccCCCeEEccCCcccccCCccccCCCCccEEEccCCcccCCCCcc
Q 005542 288 LSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLG-NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPS 366 (691)
Q Consensus 288 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 366 (691)
|+..-...|..+.+|..|.|++|+++...+..+. .+.|+.|+|..|++.-..--.|.++++|+.|.|..|.+...-...
T Consensus 185 It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 185 ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence 5555555555555555555555555543333333 335566666666554333445777777777888888777666667
Q ss_pred ccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhccc
Q 005542 367 LVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFK 446 (691)
Q Consensus 367 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~ 446 (691)
|..+.++++|+|+.|+++..-.+|+-+++.|+.|++++|.+....++.+ ..+++|++|||++|+++..-+.. +.
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~~l~~~s-f~--- 338 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRITRLDEGS-FR--- 338 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccccccCChhH-HH---
Confidence 7788888888888888877777777778888888888888776666666 44678888888888877443322 11
Q ss_pred ccccccCCccccccccccccccceeeEEEecCCchhhhhhcccccEEEccCCcccccCChhhhccCCCcceecccccccc
Q 005542 447 AMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTG 526 (691)
Q Consensus 447 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 526 (691)
.+..|++|+|++|.++..-...|..+++|++|||++|.++.
T Consensus 339 ---------------------------------------~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 339 ---------------------------------------VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred ---------------------------------------HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 15667777777777776666677777777777777777776
Q ss_pred Cccc---cccCCCCCCEEeCCCCcCCCcCcccccCCCCCCEEEccCCeeeccCCCCCCCCccCCcccCCCCCCCCCC
Q 005542 527 GIPS---SLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGIDSYSGNVGLCGFP 600 (691)
Q Consensus 527 ~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~ 600 (691)
.|.+ .|.+|++|+.|++.+|++......+|.+++.|+.|||.+|.+...-|....-..+...-+.....+|+|.
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQ 456 (873)
T ss_pred EEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEecc
Confidence 5543 4666777777777777777655567777777777777777776655543211122222233334456554
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-40 Score=322.03 Aligned_cols=436 Identities=27% Similarity=0.353 Sum_probs=253.1
Q ss_pred cCCccccCCCCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeeccCCCCCCCccEEEccCCCCCCchhhhh
Q 005542 70 SIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDILK 149 (691)
Q Consensus 70 ~lp~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~ 149 (691)
++|++++.+..++.|+.|+|+++ .+| ..+..+.+|+.|++++|. .....+....+..|..++..+|+++.+|..+.
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l~~l~~s~n~--~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~ 157 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISLVKLDCSSNE--LKELPDSIGRLLDLEDLDATNNQISSLPEDMV 157 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhhhhhhccccc--eeecCchHHHHhhhhhhhccccccccCchHHH
Confidence 45555565556666666666655 555 455555666666666555 22222222335555566666666666665555
Q ss_pred CCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCC--CCCCCcCEEeccCccCcccCCCCCCcccccCC
Q 005542 150 TQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH--LPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKG 227 (691)
Q Consensus 150 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 227 (691)
.+.+|..+++.+|.++ ..|...-++ +.|++||...|-+...++ +.+.+|+.|++..|.+. ..| .++. |
T Consensus 158 ~~~~l~~l~~~~n~l~-~l~~~~i~m--~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~g-----c 227 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNKLK-ALPENHIAM--KRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPG-----C 227 (565)
T ss_pred HHHHHHHhhccccchh-hCCHHHHHH--HHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCc-----c
Confidence 5666666666666655 333322234 556666666665555554 44555555555555554 223 2222 5
Q ss_pred CCccEEEccCCCCCCCCCccc-cCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEE
Q 005542 228 CNLTYLRLSGNHLEGPLPPSL-SNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLD 306 (691)
Q Consensus 228 ~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 306 (691)
..|+++.++.|.+. .+|... .+++++.+||+..|+++ ..|+.+.-+.+|++||+++|.++ ..|..++++ .|+.|-
T Consensus 228 s~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 228 SLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLA 303 (565)
T ss_pred HHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehh
Confidence 55556666555555 333333 25556666666666655 45555555556666666666665 345555555 566666
Q ss_pred ccCccccccccchhhcc---CCCeEE-------ccCCc---cc-cc-CCc---cccCCCCccEEEccCCcccCCCCcccc
Q 005542 307 VGNNSLSGPIPEYLGNS---TLEVLD-------MRMNK---FS-GS-LPQ---TFGKSCVLVSLKLNGNRLEGPLPPSLV 368 (691)
Q Consensus 307 L~~n~l~~~~~~~~~~~---~L~~L~-------L~~n~---l~-~~-~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~ 368 (691)
+.+|.+...-.+.+... -|++|. ++... -+ +. .+. ....+.+.+.|++++-+++ .+|..+.
T Consensus 304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVf 382 (565)
T KOG0472|consen 304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVF 382 (565)
T ss_pred hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHH
Confidence 66665532111111100 011110 00000 00 00 001 1122345566666666666 4455443
Q ss_pred CCCC---ccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhcc
Q 005542 369 NCRH---LEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGF 445 (691)
Q Consensus 369 ~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 445 (691)
...+ ...++++.|++.+ +|..+..+..+.+.-+..|+..+.+|... +.+++|..|++++|.+. .+|.++.+
T Consensus 383 ea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv~~~l--~~l~kLt~L~L~NN~Ln-~LP~e~~~-- 456 (565)
T KOG0472|consen 383 EAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFVPLEL--SQLQKLTFLDLSNNLLN-DLPEEMGS-- 456 (565)
T ss_pred HHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccchHHH--Hhhhcceeeecccchhh-hcchhhhh--
Confidence 3333 5667777777653 44444444444333333333334444444 56777777787766553 45544321
Q ss_pred cccccccCCccccccccccccccceeeEEEecCCchhhhhhcccccEEEccCCcccccCChhhhccCCCcceeccccccc
Q 005542 446 KAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLT 525 (691)
Q Consensus 446 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 525 (691)
+..|+.||+|.|+|. .+|..+..+..|+.+-.++|++.
T Consensus 457 -----------------------------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 457 -----------------------------------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred -----------------------------------------hhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 567999999999998 77888888888999988899999
Q ss_pred cCccccccCCCCCCEEeCCCCcCCCcCcccccCCCCCCEEEccCCeee
Q 005542 526 GGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 573 (691)
Q Consensus 526 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 573 (691)
...|+.+.++.+|..|||.+|.+. .+|..++++++|+.|++++|++.
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 777777999999999999999998 78889999999999999999998
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-37 Score=313.63 Aligned_cols=396 Identities=22% Similarity=0.223 Sum_probs=313.0
Q ss_pred CCCcCcceeeeeeeeccCCccc---CCCCCCCCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCccCc
Q 005542 16 NSQPAKSFEVKAITANIPAVTS---EGIYPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFS 92 (691)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n~~~ 92 (691)
..|.|...-++|-.+.++...| .|+.++..+.||+|+|.++..- +..|.++++|+.+++.+|.++
T Consensus 48 a~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id------------~~~f~nl~nLq~v~l~~N~Lt 115 (873)
T KOG4194|consen 48 ATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHID------------FEFFYNLPNLQEVNLNKNELT 115 (873)
T ss_pred CcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCc------------HHHHhcCCcceeeeeccchhh
Confidence 6778888888888888887766 4667888899999999987332 256778999999999999988
Q ss_pred cccChhhhcCCCCCCEEEccCCCceeeeeccCCCCCCCccEEEccCCCCCCch-hhhhCCCCCCEEEccCCcCCccCChh
Q 005542 93 GSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFP-DILKTQHQLDWLDLSENQIRGRIPSW 171 (691)
Q Consensus 93 ~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~p~~ 171 (691)
.|| .......+|+.|+|.+|.|..... .....++.|+.|||+.|.|+++| ..|..-.++++|+|++|+|+..-...
T Consensus 116 -~IP-~f~~~sghl~~L~L~~N~I~sv~s-e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~ 192 (873)
T KOG4194|consen 116 -RIP-RFGHESGHLEKLDLRHNLISSVTS-EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH 192 (873)
T ss_pred -hcc-cccccccceeEEeeeccccccccH-HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc
Confidence 888 444445569999999887543222 11224788999999999999887 56767788999999999998766677
Q ss_pred HhhcCcCcccEEECCCCcCCccCCC---CCCCcCEEeccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccc
Q 005542 172 MWDIGVHTLFRLDLSRNFLTSIDHL---PWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSL 248 (691)
Q Consensus 172 ~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 248 (691)
|..+ .+|..|.|++|+++..... .+++|+.|+|..|++.- ....+|..+++|+.|.+..|.+...-...|
T Consensus 193 F~~l--nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri-----ve~ltFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 193 FDSL--NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI-----VEGLTFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred cccc--chheeeecccCcccccCHHHhhhcchhhhhhccccceee-----ehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence 7776 7888999999999888773 36788888898888752 223455668888999999998887777788
Q ss_pred cCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEEccCccccccccchhhc-cCCCe
Q 005542 249 SNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEV 327 (691)
Q Consensus 249 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~ 327 (691)
..+.++++|+|+.|++...-..++.++++|+.|++++|.|....++++...++|++|+|+.|+++...+..+.. ..|++
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEE 345 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhh
Confidence 88999999999999988777788888999999999999998888888888889999999999988766665543 48899
Q ss_pred EEccCCcccccCCccccCCCCccEEEccCCcccCCCCc---cccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEccc
Q 005542 328 LDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPP---SLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRS 404 (691)
Q Consensus 328 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 404 (691)
|+|+.|+++..-...|..+.+|++|+|++|.++..+.+ .|.++++|+.|++.+|++..+...+|.+++.|++|+|.+
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCC
Confidence 99999988877777888889999999999988755433 577888999999999999888888899999999999999
Q ss_pred CcCcCcCCCCCCCCCCCCccEEEcCCCcCccC
Q 005542 405 NRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGV 436 (691)
Q Consensus 405 n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 436 (691)
|.+...-+..+ ..+ .|+.|-+..-.|-..
T Consensus 426 NaiaSIq~nAF--e~m-~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 426 NAIASIQPNAF--EPM-ELKELVMNSSSFLCD 454 (873)
T ss_pred Ccceeeccccc--ccc-hhhhhhhcccceEEe
Confidence 98887777776 445 777777765544433
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-38 Score=306.29 Aligned_cols=445 Identities=24% Similarity=0.308 Sum_probs=341.7
Q ss_pred CCCCCCCCcEEECcCCcccccCCCC-----------CCCCccccCCccccCCCCCCEEEccCccCccccChhhhcCCCCC
Q 005542 38 EGIYPGQLRHLDLGNNHFVGKIPAS-----------LDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNL 106 (691)
Q Consensus 38 ~~~~~~~L~~LdLs~n~l~~~~~~~-----------~~n~~~g~lp~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L 106 (691)
....+..+++|++++|+++...|+. +.|++ .++|+.++.+.+|+.|+.++|.+. +++ ++++.+-.|
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~~s~n~~~-el~-~~i~~~~~l 139 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLDCSSNELK-ELP-DSIGRLLDL 139 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhhcccccee-ecC-chHHHHhhh
Confidence 3335667888888888887433332 33443 478999999999999999999998 777 789999999
Q ss_pred CEEEccCCCceeeeeccCCCCCCCccEEEccCCCCCCchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECC
Q 005542 107 KYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLS 186 (691)
Q Consensus 107 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls 186 (691)
+.|+..+|++ ....+....+.+|..+++.+|++.++|+..-.++.|++||..+|.+. .+|..++.+ .+|..|++.
T Consensus 140 ~dl~~~~N~i--~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l--~~L~~LyL~ 214 (565)
T KOG0472|consen 140 EDLDATNNQI--SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGL--ESLELLYLR 214 (565)
T ss_pred hhhhcccccc--ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcch--hhhHHHHhh
Confidence 9999999994 33333444688999999999999999877777999999999999987 899999988 999999999
Q ss_pred CCcCCccCC-CCCCCcCEEeccCccCcccCCCCCC-cccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcC
Q 005542 187 RNFLTSIDH-LPWKNLEFLTLDSNLLQGSLPNLPP-HMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNL 264 (691)
Q Consensus 187 ~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 264 (691)
.|++...+. ..+..|++|+++.|++. .+|+... + +.++..||+..|++. ..|+.+.-+.+|++||+++|.+
T Consensus 215 ~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~-----L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 215 RNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKH-----LNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred hcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcc-----cccceeeeccccccc-cCchHHHHhhhhhhhcccCCcc
Confidence 999998875 56889999999999987 3444333 4 788999999999999 7888999999999999999999
Q ss_pred CCCcCcccCCCCCCCEEEccCCcccccCcccccCC------CCCcEE----EccCcc---------ccccccchhhccCC
Q 005542 265 SGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNS------TSLSFL----DVGNNS---------LSGPIPEYLGNSTL 325 (691)
Q Consensus 265 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l------~~L~~L----~L~~n~---------l~~~~~~~~~~~~L 325 (691)
+ .+|..++++ .|+.|.+.+|.+... ...+-+. +.|+.- -++.-. ..+..|+.....+.
T Consensus 288 s-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 288 S-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred c-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 8 578899999 999999999987632 1111111 111110 011100 11122222233378
Q ss_pred CeEEccCCcccccCCccccCC--CCccEEEccCCcccCCCCccccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcc
Q 005542 326 EVLDMRMNKFSGSLPQTFGKS--CVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR 403 (691)
Q Consensus 326 ~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 403 (691)
++|++++-+++....+.|..- .-.+.++++.|++. .+|..+..++.+...-+..|+.-+.+|..+..+++|..|+|+
T Consensus 365 kiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 365 KILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred hhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 889998888884443444322 23778999999998 788888777777655444455556788889999999999999
Q ss_pred cCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhcccccccccCCccccccccccccccceeeEEEecCCchhh
Q 005542 404 SNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQM 483 (691)
Q Consensus 404 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 483 (691)
+|.+.. +|... ..+..|+.||+|.|.|. .+|..+.
T Consensus 444 NN~Ln~-LP~e~--~~lv~Lq~LnlS~NrFr-~lP~~~y----------------------------------------- 478 (565)
T KOG0472|consen 444 NNLLND-LPEEM--GSLVRLQTLNLSFNRFR-MLPECLY----------------------------------------- 478 (565)
T ss_pred cchhhh-cchhh--hhhhhhheecccccccc-cchHHHh-----------------------------------------
Confidence 988764 44444 55677999999999875 3442211
Q ss_pred hhhcccccEEEccCCcccccCChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCcCC
Q 005542 484 ERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 549 (691)
Q Consensus 484 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 549 (691)
.+..++.+-.++|++....|+.+.++.+|.+|||.+|.+. .+|..++++++|++|++++|.+.
T Consensus 479 --~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 479 --ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred --hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 1345566666779998888888999999999999999999 89999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-35 Score=309.40 Aligned_cols=424 Identities=26% Similarity=0.320 Sum_probs=215.3
Q ss_pred CCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeeccCCC-CCCCccEEEccCCCCCCchhhhhCCCCCCEEE
Q 005542 80 NLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNISEFPDILKTQHQLDWLD 158 (691)
Q Consensus 80 ~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 158 (691)
+|+.||+|+|.+. ..| ..+..+.+|+.|+++.|.|. ..|... .+.+|+++.|.+|.+..+|..+..+++|++|+
T Consensus 46 ~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~i~---~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNYIR---SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeeccccccc-cCC-chhhhHHHHhhcccchhhHh---hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 3666666666654 455 45555666666666665432 222222 35566666666666666666666666666666
Q ss_pred ccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCCCCCCCcCEEeccCccCcccCCCCCCcc--------------cc
Q 005542 159 LSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHM--------------TY 224 (691)
Q Consensus 159 Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~--------------~~ 224 (691)
++.|.+. .+|..+..+ ..++.++.++|....... . ..++.+++..|.+.+.++..+..+ ..
T Consensus 121 lS~N~f~-~~Pl~i~~l--t~~~~~~~s~N~~~~~lg-~-~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 121 LSFNHFG-PIPLVIEVL--TAEEELAASNNEKIQRLG-Q-TSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL 195 (1081)
T ss_pred cchhccC-CCchhHHhh--hHHHHHhhhcchhhhhhc-c-ccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence 6666655 555555444 444445555541111000 0 113444444444443333333220 00
Q ss_pred cCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcE
Q 005542 225 AKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSF 304 (691)
Q Consensus 225 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 304 (691)
..+.+|+.+....|++... .-.-++|+.|+.++|.+....+ -....+|++++++.|+++ .+|+++..+.+|+.
T Consensus 196 s~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEA 268 (1081)
T ss_pred hhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceE
Confidence 0022333333333333311 0112344445555554442111 112334555555555555 23455555555555
Q ss_pred EEccCccccccccchhhccCCCeEEccCCcccccCCccccCCCCccEEEccCCcccCCCCc-cccCCC-CccEEEccCCC
Q 005542 305 LDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPP-SLVNCR-HLEVIDVGNNQ 382 (691)
Q Consensus 305 L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~-~L~~L~L~~n~ 382 (691)
++..+|+++......+...+|+.|++..|.+. -+|.......+|++|+|..|++. .+|+ .+.-.. +|+.|..+.|+
T Consensus 269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 269 LNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred ecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcc
Confidence 55555555433333333335555555555554 34444444555555555555555 2232 222222 24445555555
Q ss_pred CCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhcccccccccCCcccccccc
Q 005542 383 INETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMR 462 (691)
Q Consensus 383 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~l~ 462 (691)
+.......=...+.|+.|.+.+|.++...-..+ ..++.|++|+|++|++. .+|...+.+
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhLsyNrL~-~fpas~~~k------------------ 405 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHLSYNRLN-SFPASKLRK------------------ 405 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhh--ccccceeeeeecccccc-cCCHHHHhc------------------
Confidence 443221111124456666666666665443333 45566666666666654 344433221
Q ss_pred ccccccceeeEEEecCCchhhhhhcccccEEEccCCcccccCChhhhccCCCcceeccccccccCccccccCCCCCCEEe
Q 005542 463 SLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 542 (691)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 542 (691)
++.|+.|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|
T Consensus 406 ------------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 406 ------------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ------------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 556677777777777 45677777777777777777777 666 677777777777
Q ss_pred CCCCcCCCc-CcccccCCCCCCEEEccCCe
Q 005542 543 LSSNKLAGR-IPTQLASLNYLSVLNLSNNQ 571 (691)
Q Consensus 543 Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~ 571 (691)
+|.|+++.. +|..... ++|++||+++|.
T Consensus 459 lS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 777777643 2333222 677777777775
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=8.3e-35 Score=308.68 Aligned_cols=483 Identities=27% Similarity=0.304 Sum_probs=360.5
Q ss_pred EECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeeccCCC-
Q 005542 48 LDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS- 126 (691)
Q Consensus 48 LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~- 126 (691)
+|.|...+. .||..+..-..++.|+++.|.+. ..|.+.+.+.-+|+.||+++|+ .+.+|...
T Consensus 3 vd~s~~~l~-------------~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~---~~~fp~~it 65 (1081)
T KOG0618|consen 3 VDASDEQLE-------------LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQ---ISSFPIQIT 65 (1081)
T ss_pred cccccccCc-------------ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccc---cccCCchhh
Confidence 566666665 67778887777999999999887 5566677778889999999998 44555544
Q ss_pred CCCCccEEEccCCCCCCchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCC--CCCCCcCEE
Q 005542 127 SFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH--LPWKNLEFL 204 (691)
Q Consensus 127 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L 204 (691)
.+.+|+.|+++.|.|..+|....++++|+++.|..|.+. ..|..+..+ .+|++||++.|++...+. ..++.++.+
T Consensus 66 ~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~l--knl~~LdlS~N~f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 66 LLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISEL--KNLQYLDLSFNHFGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred hHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHHhh--hcccccccchhccCCCchhHHhhhHHHHH
Confidence 488999999999999999999999999999999999998 899999988 999999999999988776 567788888
Q ss_pred eccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEcc
Q 005542 205 TLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVR 284 (691)
Q Consensus 205 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 284 (691)
..++|..... ++. ..++.+++..|.+.+.++..+..+.. .|+|++|.+. . ..+..+.+|+.+...
T Consensus 143 ~~s~N~~~~~----lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~ 207 (1081)
T KOG0618|consen 143 AASNNEKIQR----LGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCE 207 (1081)
T ss_pred hhhcchhhhh----hcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhh
Confidence 9998832211 221 13788888888888888777777766 7999999886 2 345678888888888
Q ss_pred CCcccccCcccccCCCCCcEEEccCccccccccchhhccCCCeEEccCCcccccCCccccCCCCccEEEccCCcccCCCC
Q 005542 285 NNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLP 364 (691)
Q Consensus 285 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 364 (691)
.|++.... -..++|+.|+.++|.+.... ......+|++++++.|+++ .+|+++..+.+|+.+...+|.++ .+|
T Consensus 208 rn~ls~l~----~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp 280 (1081)
T KOG0618|consen 208 RNQLSELE----ISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALP 280 (1081)
T ss_pred hcccceEE----ecCcchheeeeccCcceeec-cccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhH
Confidence 88877431 34467888999998887332 2333448899999999888 55688888999999999999886 677
Q ss_pred ccccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhc
Q 005542 365 PSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNG 444 (691)
Q Consensus 365 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~ 444 (691)
..+...++|+.|++..|.+.. +|.....+..|++|+|..|++.......+ .....+|+.++.+.|++... |..--..
T Consensus 281 ~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l-~v~~~~l~~ln~s~n~l~~l-p~~~e~~ 357 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFL-AVLNASLNTLNVSSNKLSTL-PSYEENN 357 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHH-hhhhHHHHHHhhhhcccccc-ccccchh
Confidence 778888888888888888865 44456678888888888888764433222 11123356666666665422 1100111
Q ss_pred ccccccccCCccccccccccccccceeeEEEecCCchhhhhhcccccEEEccCCcccccCChhhhccCCCcceecccccc
Q 005542 445 FKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNL 524 (691)
Q Consensus 445 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 524 (691)
...++.+...++.+. ...+.......+|+.|+|++|++...+...+.++..|++|+||+|.+
T Consensus 358 ~~~Lq~LylanN~Lt------------------d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 358 HAALQELYLANNHLT------------------DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred hHHHHHHHHhcCccc------------------ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence 112222221111110 00111122368999999999999977777889999999999999999
Q ss_pred ccCccccccCCCCCCEEeCCCCcCCCcCcccccCCCCCCEEEccCCeeecc-CCCCCCCCccCCcccCCCCCC
Q 005542 525 TGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGP-IPGGPQFNTFGIDSYSGNVGL 596 (691)
Q Consensus 525 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~-ip~~~~~~~~~~~~~~gn~~l 596 (691)
+ .+|+++.++..|++|...+|++. ..| .+..++.|+.+|+|.|+|+-. +|......++....+.||..+
T Consensus 420 ~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 420 T-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred h-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 9 89999999999999999999998 677 789999999999999999754 444333345555667788753
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-33 Score=286.00 Aligned_cols=385 Identities=26% Similarity=0.354 Sum_probs=257.6
Q ss_pred CCCCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeee
Q 005542 42 PGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTK 121 (691)
Q Consensus 42 ~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~ 121 (691)
++-++-.|+|+|.++|. .+|.....++.++.|.|...++. .+| +.++.|.+|++|.+++|++ ...
T Consensus 6 LpFVrGvDfsgNDFsg~-----------~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L--~~v 70 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGD-----------RFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQL--ISV 70 (1255)
T ss_pred cceeecccccCCcCCCC-----------cCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhh--Hhh
Confidence 66788999999999864 57789999999999999999998 899 8999999999999999984 333
Q ss_pred ccCCCCCCCccEEEccCCCCC--CchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCCCCCC
Q 005542 122 LTVNSSFPNLWALGLSACNIS--EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWK 199 (691)
Q Consensus 122 ~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 199 (691)
......++.|+.+.+.+|++. .+|..+.++..|+.||||+|+++ ..|..+... +++-.|+||+|++..++.
T Consensus 71 hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A--Kn~iVLNLS~N~IetIPn---- 143 (1255)
T KOG0444|consen 71 HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA--KNSIVLNLSYNNIETIPN---- 143 (1255)
T ss_pred hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh--cCcEEEEcccCccccCCc----
Confidence 333345888999999999887 78888888999999999999988 778777665 555555555555443322
Q ss_pred CcCEEeccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCC
Q 005542 200 NLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLS 279 (691)
Q Consensus 200 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 279 (691)
..+.+ ++.|-.|||++|++. .+|+.+..+.+|++|+|++|.+....-..+..+++|+
T Consensus 144 -----------------~lfin-----LtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 144 -----------------SLFIN-----LTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred -----------------hHHHh-----hHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 11222 556667777777777 5667777777888888888776543333444556666
Q ss_pred EEEccCCccc-ccCcccccCCCCCcEEEccCccccccccchhhccCCCeEEccCCcccccCCccccCCCCccEEEccCCc
Q 005542 280 FLDVRNNNLS-GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNR 358 (691)
Q Consensus 280 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 358 (691)
+|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.+..+++|+.|+|++|.
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp------------------------~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP------------------------IVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCC------------------------cchHHHhhhhhhheeccCcCc
Confidence 6666665432 245555555555555555555554 344444455555555555555
Q ss_pred ccCCCCccccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCc-CCCCCCCCCCCCccEEEcCCCcCccCC
Q 005542 359 LEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGP-IGDTKTRVPFPKLRIIDLSYNQFTGVL 437 (691)
Q Consensus 359 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~~ 437 (691)
++ .+......+.+|+.|++|.|+++ ..|.++..++.|+.|.+.+|+++-. +|..+ +.
T Consensus 257 it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI--GK------------------ 314 (1255)
T KOG0444|consen 257 IT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI--GK------------------ 314 (1255)
T ss_pred ee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch--hh------------------
Confidence 55 33334444555666666666664 3555566666666666665554310 11111 11
Q ss_pred ChHhhhcccccccccCCccccccccccccccceeeEEEecCCchhhhhhcccccEEEccCCcccccCChhhhccCCCcce
Q 005542 438 PIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSL 517 (691)
Q Consensus 438 p~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 517 (691)
+..|+.+..++|.+. ..|+.+..+..|+.|
T Consensus 315 -------------------------------------------------L~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 315 -------------------------------------------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred -------------------------------------------------hhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 334444555555554 678888889999999
Q ss_pred eccccccccCccccccCCCCCCEEeCCCCcCCCcCcccccCCCCCCEEEcc
Q 005542 518 NISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 568 (691)
Q Consensus 518 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 568 (691)
.|++|++. .+|+++.-|+.|+.||+..|.-..-.|.--..-++|+.-++.
T Consensus 345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 345 KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 99999998 789999999999999999997664444322223456665554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2e-31 Score=270.54 Aligned_cols=363 Identities=26% Similarity=0.354 Sum_probs=222.3
Q ss_pred cEEEccCCCCC--CchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCC--CCCCCcCEEecc
Q 005542 132 WALGLSACNIS--EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH--LPWKNLEFLTLD 207 (691)
Q Consensus 132 ~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~ 207 (691)
+-+++++|.++ .+|.....+++++.|.|...++. .+|..++.+ .+|++|.+++|++..+.. ..++.|+.+++.
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~l--qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRL--QKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHH--hhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 33444444444 44555555555555555555554 455555544 455555555544443322 233445555555
Q ss_pred CccCcc-cCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCC
Q 005542 208 SNLLQG-SLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN 286 (691)
Q Consensus 208 ~n~l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 286 (691)
.|++.. .+|..+.. +..|+.|||++|++. ..|..+..-+++-+|+||+|+|..+....|.+++.|-.|||++|
T Consensus 87 ~N~LKnsGiP~diF~-----l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFR-----LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred ccccccCCCCchhcc-----cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 554432 23333333 555666666666666 45555555566666666666665433333445555555555555
Q ss_pred cccccCcccccCCCCCcEEEccCccccccccchhhccCCCeEEccCCcccccCCccccCCCCccEEEccCCccc-CCCCc
Q 005542 287 NLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLE-GPLPP 365 (691)
Q Consensus 287 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~ 365 (691)
++. .+|+.+..+..|++|+|++|.+. -.--..+..+++|+.|.+++.+-+ ..+|.
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~-----------------------hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLN-----------------------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhh-----------------------HHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 555 34444555555555555555443 211122334455556666554433 24566
Q ss_pred cccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhcc
Q 005542 366 SLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGF 445 (691)
Q Consensus 366 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 445 (691)
++..+.+|..+|+|.|.+. ..|..+-.+++|+.|+|++|+++..-... ....+|++|++|.|+++ .+|....
T Consensus 217 sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~---~~W~~lEtLNlSrNQLt-~LP~avc--- 288 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE---GEWENLETLNLSRNQLT-VLPDAVC--- 288 (1255)
T ss_pred chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH---HHHhhhhhhccccchhc-cchHHHh---
Confidence 6666666777777776664 35666666677777777777665332111 33567777777777776 3443321
Q ss_pred cccccccCCccccccccccccccceeeEEEecCCchhhhhhcccccEEEccCCcccc-cCChhhhccCCCcceecccccc
Q 005542 446 KAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQG-EISEVLGKLNSLKSLNISHNNL 524 (691)
Q Consensus 446 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l 524 (691)
.++.|+.|.+.+|+++- -+|..++.+..|+.+..++|.+
T Consensus 289 ----------------------------------------KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 289 ----------------------------------------KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred ----------------------------------------hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 16677778888887753 4788899999999999999999
Q ss_pred ccCccccccCCCCCCEEeCCCCcCCCcCcccccCCCCCCEEEccCCeeeccCC
Q 005542 525 TGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 577 (691)
Q Consensus 525 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 577 (691)
. ..|+.+..+..|+.|.|++|++. .+|+++--|+.|+.||+..|+=--..|
T Consensus 329 E-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 329 E-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred c-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 8 89999999999999999999998 789999999999999999997655555
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=8.3e-23 Score=242.98 Aligned_cols=340 Identities=19% Similarity=0.195 Sum_probs=250.1
Q ss_pred hhhhhCCCCCCEEEccCCcC------CccCChhHhhcCcCcccEEECCCCcCCccCC-CCCCCcCEEeccCccCcccCCC
Q 005542 145 PDILKTQHQLDWLDLSENQI------RGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH-LPWKNLEFLTLDSNLLQGSLPN 217 (691)
Q Consensus 145 p~~l~~l~~L~~L~Ls~n~l------~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~ 217 (691)
+.+|..+++|+.|.+..+.. ...+|..+..++ .+|+.|++.++.+...+. ..+.+|+.|++.+|.+. .++.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp-~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP-PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcC-cccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-cccc
Confidence 35688888888888866532 234566565542 568888888888776654 34578888888888876 3444
Q ss_pred CCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCccccc
Q 005542 218 LPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLG 297 (691)
Q Consensus 218 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 297 (691)
.+.. +++|+.|+++++.....+| .++.+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+
T Consensus 629 ~~~~-----l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 629 GVHS-----LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred cccc-----CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 4444 7788999998876555666 47788899999998887666788888889999999998876555677655
Q ss_pred CCCCCcEEEccCccccccccchhhccCCCeEEccCCcccccCCccccCCCCccEEEccCCccc-------CCCCccccCC
Q 005542 298 NSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLE-------GPLPPSLVNC 370 (691)
Q Consensus 298 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~l~~l 370 (691)
++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|++|.+.++... ...+......
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 7888999999988766566543 247888999988876 456544 4678888888764322 1112223345
Q ss_pred CCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhccccccc
Q 005542 371 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMR 450 (691)
Q Consensus 371 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~ 450 (691)
++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|+.|++++|.....+|..
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~---------- 844 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPDI---------- 844 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCcccccccc----------
Confidence 788999999988777888888999999999999887665666543 5788899999887654433311
Q ss_pred ccCCccccccccccccccceeeEEEecCCchhhhhhcccccEEEccCCcccccCChhhhccCCCcceeccccccccCccc
Q 005542 451 RDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPS 530 (691)
Q Consensus 451 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 530 (691)
.++++.|+|++|.++ .+|..+..+++|+.|+|++|.-...+|.
T Consensus 845 ------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 845 ------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred ------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 457888899999887 5677888899999999988655556888
Q ss_pred cccCCCCCCEEeCCCCc
Q 005542 531 SLRNLTELESLDLSSNK 547 (691)
Q Consensus 531 ~~~~l~~L~~L~Ls~N~ 547 (691)
.+..+++|+.|++++|.
T Consensus 888 ~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 888 NISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccccCCCeeecCCCc
Confidence 88888999999998885
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=3.3e-25 Score=214.84 Aligned_cols=145 Identities=25% Similarity=0.281 Sum_probs=101.7
Q ss_pred ccccccccccCCCCCCCcCcceeeeeeeeccCCcccCCCCCCCCcEEECcCCcccccCCCCCCCCccccCC-ccccCCCC
Q 005542 2 ETKTAYIDVCDDTSNSQPAKSFEVKAITANIPAVTSEGIYPGQLRHLDLGNNHFVGKIPASLDNQLIGSIP-SSIFELVN 80 (691)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp-~~l~~l~~ 80 (691)
.+|..+...|+-.+.+.+.++..++|....+..++.. -++..+.++|..|+|+ .|| .+|..+++
T Consensus 28 ~~C~~~~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~--LP~~tveirLdqN~I~-------------~iP~~aF~~l~~ 92 (498)
T KOG4237|consen 28 PTCAHSASACPAPCTCSDVEGGIVDCRGKGLTEVPAN--LPPETVEIRLDQNQIS-------------SIPPGAFKTLHR 92 (498)
T ss_pred hhhhhccccCCCCcccCCCCCceEEccCCCcccCccc--CCCcceEEEeccCCcc-------------cCChhhccchhh
Confidence 3566667788888877676778888888877777664 3678889999999998 344 56778999
Q ss_pred CCEEEccCccCccccChhhhcCCCCCCEEEccC-CCceeeeeccC--CCCCCCccEEEccCCCCCCch-hhhhCCCCCCE
Q 005542 81 LTFVSLSFNNFSGSVELYDFAKLKNLKYLILSN-ISLSVSTKLTV--NSSFPNLWALGLSACNISEFP-DILKTQHQLDW 156 (691)
Q Consensus 81 L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~ 156 (691)
||.||||+|.|+ .|..++|..+++|..|-+.+ |.| ..++. +.++..|+.|.+.-|++.-++ +.|..+++|..
T Consensus 93 LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI---~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 93 LRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKI---TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred hceecccccchh-hcChHhhhhhHhhhHHHhhcCCch---hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 999999999998 66668999999988887766 443 22222 123555666666666655443 45555666666
Q ss_pred EEccCCcCC
Q 005542 157 LDLSENQIR 165 (691)
Q Consensus 157 L~Ls~n~l~ 165 (691)
|.+.+|.+.
T Consensus 169 LslyDn~~q 177 (498)
T KOG4237|consen 169 LSLYDNKIQ 177 (498)
T ss_pred hcccchhhh
Confidence 666655554
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=7.7e-22 Score=234.76 Aligned_cols=339 Identities=20% Similarity=0.213 Sum_probs=254.1
Q ss_pred CCCCCcEEECcCCcccccCCCCCCCCccccCCccccCCC-CCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceee
Q 005542 41 YPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELV-NLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVS 119 (691)
Q Consensus 41 ~~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~-~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~ 119 (691)
.+++|+.|.+.++.... .+.....+|..+..++ +|+.|++.++.+. .+| ..| ...+|++|++++|.+...
T Consensus 556 ~m~~L~~L~~~~~~~~~------~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP-~~f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQ------KKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMP-SNF-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred cCccccEEEEecccccc------cccceeecCcchhhcCcccEEEEecCCCCC-CCC-CcC-CccCCcEEECcCcccccc
Confidence 57899999997765321 1222335667777764 5999999998887 777 455 578999999999875322
Q ss_pred eeccCCCCCCCccEEEccCCC-CCCchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCC--C
Q 005542 120 TKLTVNSSFPNLWALGLSACN-ISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH--L 196 (691)
Q Consensus 120 ~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~--~ 196 (691)
......+++|++|+|+++. +..+|. +..+++|++|++++|.....+|..+..+ ++|+.|++++|......| .
T Consensus 627 --~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L--~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 627 --WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYL--NKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred --ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhcc--CCCCEEeCCCCCCcCccCCcC
Confidence 1222358899999998875 557774 7788999999999987767888888887 899999999875444333 3
Q ss_pred CCCCcCEEeccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCC-------CCcC
Q 005542 197 PWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS-------GPIP 269 (691)
Q Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-------~~~~ 269 (691)
.+++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|++|.+.++... ...+
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~--------~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI--------STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc--------cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccch
Confidence 5788999999998766555542 347889999999887 566554 5788888888764321 1112
Q ss_pred cccCCCCCCCEEEccCCcccccCcccccCCCCCcEEEccCccccccccchhhccCCCeEEccCCcccccCCccccCCCCc
Q 005542 270 ECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVL 349 (691)
Q Consensus 270 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 349 (691)
......++|+.|++++|.....+|.++.++++|+.|++++|...+.+|......+|+.|++++|.....+|.. ..+|
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL 848 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNI 848 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---cccc
Confidence 2223457899999999988778899999999999999999876667777766679999999998655555543 3678
Q ss_pred cEEEccCCcccCCCCccccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcC
Q 005542 350 VSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 407 (691)
Q Consensus 350 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 407 (691)
+.|++++|.++ .+|.++..+++|+.|++++|.--..+|..+..+++|+.+++++|.-
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 99999999998 6788899999999999998654445676778899999999998853
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.7e-21 Score=213.35 Aligned_cols=173 Identities=27% Similarity=0.351 Sum_probs=77.7
Q ss_pred CccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEEcc
Q 005542 229 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVG 308 (691)
Q Consensus 229 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 308 (691)
+|+.|++.+|+++. +|. .+++|++|++++|+++. +|.. .++|+.|++++|.++. +|.. .++|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhh-hhhc---hhhcCEEECc
Confidence 45555555555552 332 13455555555555552 2321 2455555555555542 2221 1345555555
Q ss_pred CccccccccchhhccCCCeEEccCCcccccCCccccCCCCccEEEccCCcccCCCCccccCCCCccEEEccCCCCCcCcc
Q 005542 309 NNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 388 (691)
Q Consensus 309 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 388 (691)
+|++.. +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.+++ +|.. ..+|+.|++++|++++. |
T Consensus 291 ~N~Lt~-LP~~--p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L-P 358 (788)
T PRK15387 291 GNQLTS-LPVL--PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL-P 358 (788)
T ss_pred CCcccc-cccc--ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCCC-C
Confidence 555542 2221 1245555555555543 2221 1234455555555542 3321 13455555555555532 2
Q ss_pred hhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCc
Q 005542 389 HWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFT 434 (691)
Q Consensus 389 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~ 434 (691)
.. .++|+.|++++|++.+ +|.. ..+|+.|++++|+++
T Consensus 359 ~l---p~~L~~L~Ls~N~L~~-LP~l-----~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 359 TL---PSELYKLWAYNNRLTS-LPAL-----PSGLKELIVSGNRLT 395 (788)
T ss_pred CC---Ccccceehhhcccccc-Cccc-----ccccceEEecCCccc
Confidence 11 2344555555555543 2211 134555555555554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.6e-21 Score=213.47 Aligned_cols=264 Identities=27% Similarity=0.313 Sum_probs=145.7
Q ss_pred CCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeecc
Q 005542 44 QLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLT 123 (691)
Q Consensus 44 ~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 123 (691)
.-..|||+.+.++ .+|..+. ++|+.|++++|+++ .+| . ..++|++|++++|+|+.. |
T Consensus 202 ~~~~LdLs~~~Lt-------------sLP~~l~--~~L~~L~L~~N~Lt-~LP-~---lp~~Lk~LdLs~N~LtsL---P 258 (788)
T PRK15387 202 GNAVLNVGESGLT-------------TLPDCLP--AHITTLVIPDNNLT-SLP-A---LPPELRTLEVSGNQLTSL---P 258 (788)
T ss_pred CCcEEEcCCCCCC-------------cCCcchh--cCCCEEEccCCcCC-CCC-C---CCCCCcEEEecCCccCcc---c
Confidence 4557777777776 4445554 36777888888777 566 2 246777777777765422 2
Q ss_pred CCCCCCCccEEEccCCCCCCchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCCCCCCCcCE
Q 005542 124 VNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEF 203 (691)
Q Consensus 124 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~ 203 (691)
. ..++|+.|++++|.+..+|... .+|+.|++++|+++ .+|.. . ++|+.|++++|+++++.. ...+|+.
T Consensus 259 ~--lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p--~~L~~LdLS~N~L~~Lp~-lp~~L~~ 326 (788)
T PRK15387 259 V--LPPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLT-SLPVL---P--PGLQELSVSDNQLASLPA-LPSELCK 326 (788)
T ss_pred C--cccccceeeccCCchhhhhhch---hhcCEEECcCCccc-ccccc---c--cccceeECCCCccccCCC-Ccccccc
Confidence 2 1356777777777776666532 45666777777666 44432 1 556666666666665432 2234555
Q ss_pred EeccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEc
Q 005542 204 LTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDV 283 (691)
Q Consensus 204 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 283 (691)
|++++|.+++ +|.. ..+|++|++++|++++ +|.. ..+|+.|++++|
T Consensus 327 L~Ls~N~L~~-LP~l--------p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N--------------------- 372 (788)
T PRK15387 327 LWAYNNQLTS-LPTL--------PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNN--------------------- 372 (788)
T ss_pred cccccCcccc-cccc--------ccccceEecCCCccCC-CCCC---Ccccceehhhcc---------------------
Confidence 5555555542 2221 1234555555555542 2221 133444444444
Q ss_pred cCCcccccCcccccCCCCCcEEEccCccccccccchhhccCCCeEEccCCcccccCCccccCCCCccEEEccCCcccCCC
Q 005542 284 RNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPL 363 (691)
Q Consensus 284 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 363 (691)
.++. +|.. ..+|+.|++++|.+.+ +|.. ..+|+.|++++|.++. +|.. ..+|+.|++++|+++ .+
T Consensus 373 ---~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~L 437 (788)
T PRK15387 373 ---RLTS-LPAL---PSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RL 437 (788)
T ss_pred ---cccc-Cccc---ccccceEEecCCcccC-CCCc--ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-cc
Confidence 4442 2321 1345555555555542 3321 1256666666666553 3432 234666777777776 56
Q ss_pred CccccCCCCccEEEccCCCCCcCcchhh
Q 005542 364 PPSLVNCRHLEVIDVGNNQINETFPHWL 391 (691)
Q Consensus 364 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 391 (691)
|..+..+++|+.|++++|++++..+..+
T Consensus 438 P~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 6667777777777777777776666554
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.3e-23 Score=203.83 Aligned_cols=404 Identities=20% Similarity=0.201 Sum_probs=229.0
Q ss_pred CCccEEEccCCCCCCch-hhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEEC-CCCcCCccCCCCCCCcCEEec
Q 005542 129 PNLWALGLSACNISEFP-DILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDL-SRNFLTSIDHLPWKNLEFLTL 206 (691)
Q Consensus 129 ~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~l-s~n~l~~~~~~~~~~L~~L~L 206 (691)
+.-..++|..|+|+.|| .+|+.+++|+.||||+|.|+...|..|..+ .+|..|-+ ++|+|+.+..
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL--~~l~~Lvlyg~NkI~~l~k----------- 133 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL--ASLLSLVLYGNNKITDLPK----------- 133 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh--HhhhHHHhhcCCchhhhhh-----------
Confidence 35667777777777776 567777777777777777776677776655 44433322 2344444333
Q ss_pred cCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCC
Q 005542 207 DSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN 286 (691)
Q Consensus 207 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 286 (691)
..++ ++..++.|.+.-|++.....+.|..+++|..|.+..|.+..+--..|..+..++.+.+..|
T Consensus 134 ----------~~F~-----gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 134 ----------GAFG-----GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred ----------hHhh-----hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 1122 2444555555555555444555555555555555555554332235555555555555555
Q ss_pred ccc------------ccCcccccCCCCCcEEEccCccccccccchhhccCCCeE--E-ccCCcccccCC-ccccCCCCcc
Q 005542 287 NLS------------GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVL--D-MRMNKFSGSLP-QTFGKSCVLV 350 (691)
Q Consensus 287 ~l~------------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L--~-L~~n~l~~~~~-~~~~~l~~L~ 350 (691)
.+- ...|..++......-..+.+.++...-+..+.. +++.+ . .+.+...+..| ..|..+++|+
T Consensus 199 p~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c-~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 199 PFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC-SLESLPSRLSSEDFPDSICPAKCFKKLPNLR 277 (498)
T ss_pred ccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh-hHHhHHHhhccccCcCCcChHHHHhhcccce
Confidence 421 111222222222233333333333222222221 12222 1 12222222333 4578888899
Q ss_pred EEEccCCcccCCCCccccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCC
Q 005542 351 SLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSY 430 (691)
Q Consensus 351 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~ 430 (691)
+|+|++|.++++-+.+|.+...+++|.|..|++.......|.++..|+.|+|.+|+++...|..+ ....+|.+|++-.
T Consensus 278 ~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLS 355 (498)
T ss_pred EeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--cccceeeeeehcc
Confidence 99999999988888888888899999999998887777888888899999999999888777776 6677888888888
Q ss_pred CcCccCCChHhhhccccccc-ccCCc-cccccccccccccceeeEEEecCCch-------hhhhhcccccE-EEccCCcc
Q 005542 431 NQFTGVLPIWYLNGFKAMMR-RDDNS-IEVNYMRSLNYSYYESISLTMKGNDI-------QMERILTTFAT-IDLSSNRF 500 (691)
Q Consensus 431 n~l~~~~p~~~~~~~~~l~~-~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~L~~-L~Ls~n~l 500 (691)
|.+...--..|++.|-.-.. ..... ....++..+.......-.....+.+. ..+..++-+.+ ...|+..+
T Consensus 356 Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l 435 (498)
T KOG4237|consen 356 NPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL 435 (498)
T ss_pred CcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch
Confidence 88876655555554422111 00000 00011111111000000000000000 00011122221 12233333
Q ss_pred cccCChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCcCCCcCcccccCCCCCCEEEccCC
Q 005542 501 QGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNN 570 (691)
Q Consensus 501 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 570 (691)
. .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+++..--..|.++++|.+|-||+|
T Consensus 436 k-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 436 K-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred h-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 2 3333222 34567899999999 77776 67788 8999999998777778999999999999887
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.9e-19 Score=198.88 Aligned_cols=245 Identities=29% Similarity=0.414 Sum_probs=128.7
Q ss_pred ccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEEccC
Q 005542 230 LTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGN 309 (691)
Q Consensus 230 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 309 (691)
.+.|+++++.++ .+|..+. ++|+.|++++|.++. +|..+. ++|++|++++|.++ .+|..+. ++|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 455555555555 3343332 355666666666552 333332 35666666666555 3343332 3466666666
Q ss_pred ccccccccchhhccCCCeEEccCCcccccCCccccCCCCccEEEccCCcccCCCCccccCCCCccEEEccCCCCCcCcch
Q 005542 310 NSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPH 389 (691)
Q Consensus 310 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 389 (691)
|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++.. |.
T Consensus 251 N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P~ 321 (754)
T PRK15370 251 NRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-PE 321 (754)
T ss_pred CccC-cCChhHh-CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-Cc
Confidence 6655 3343322 25666666666665 3444332 356666666666663 343332 3566666666666542 32
Q ss_pred hhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhcccccccccCCccccccccccccccc
Q 005542 390 WLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYY 469 (691)
Q Consensus 390 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 469 (691)
.+ .++|+.|++++|.+++ +|..+ .++|+.|++++|+++. +|..+
T Consensus 322 ~l--~~sL~~L~Ls~N~Lt~-LP~~l----~~sL~~L~Ls~N~L~~-LP~~l---------------------------- 365 (754)
T PRK15370 322 TL--PPGLKTLEAGENALTS-LPASL----PPELQVLDVSKNQITV-LPETL---------------------------- 365 (754)
T ss_pred cc--cccceeccccCCcccc-CChhh----cCcccEEECCCCCCCc-CChhh----------------------------
Confidence 22 2456666666666654 23222 2466666666666652 33211
Q ss_pred eeeEEEecCCchhhhhhcccccEEEccCCcccccCChhhhccCCCcceeccccccccCccccc----cCCCCCCEEeCCC
Q 005542 470 ESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSL----RNLTELESLDLSS 545 (691)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~ 545 (691)
.+.|+.|+|++|.++. +|..+. .+|+.|++++|+++ .+|..+ +.++.+..|++.+
T Consensus 366 -----------------p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 366 -----------------PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred -----------------cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeC
Confidence 2456666666666663 343333 25666667776666 444332 3345666666666
Q ss_pred CcCC
Q 005542 546 NKLA 549 (691)
Q Consensus 546 N~l~ 549 (691)
|.++
T Consensus 425 Npls 428 (754)
T PRK15370 425 NPFS 428 (754)
T ss_pred CCcc
Confidence 6665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=3.2e-19 Score=198.56 Aligned_cols=246 Identities=28% Similarity=0.388 Sum_probs=130.0
Q ss_pred CCCEEEccCCCceeeeeccCCCCCCCccEEEccCCCCCCchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEE
Q 005542 105 NLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLD 184 (691)
Q Consensus 105 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ 184 (691)
+...|+++++.++ .+|... .++|+.|++++|.++.+|..+. ++|++|++++|.++ .+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~Lt---sLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~----~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT---TIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP----DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC---cCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh----ccccEEE
Confidence 4566777766533 223211 3467777777777777765443 46777777777766 4555432 4566777
Q ss_pred CCCCcCCccCCCCCCCcCEEeccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcC
Q 005542 185 LSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNL 264 (691)
Q Consensus 185 ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 264 (691)
+++|.+..+...-..+|+.|++++|++. .+|..+. .+|+.|++++|+++. +|..+. ++|+.|++++|.+
T Consensus 248 Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~-------~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 248 LSINRITELPERLPSALQSLDLFHNKIS-CLPENLP-------EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSL 316 (754)
T ss_pred CcCCccCcCChhHhCCCCEEECcCCccC-ccccccC-------CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcc
Confidence 7777666543333345666666666665 2343321 256666666666663 333322 3566666666666
Q ss_pred CCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEEccCccccccccchhhccCCCeEEccCCcccccCCcccc
Q 005542 265 SGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFG 344 (691)
Q Consensus 265 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 344 (691)
+. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+ ..+|+.|++++|.++ .+|..+.
T Consensus 317 t~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~Lt-~LP~~l~ 387 (754)
T PRK15370 317 TA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNALT-NLPENLP 387 (754)
T ss_pred cc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-cCCcCEEECCCCcCC-CCCHhHH
Confidence 53 33322 2456666666666653 443332 45666666666555 233322 135555555555555 2333332
Q ss_pred CCCCccEEEccCCcccCCCCccc----cCCCCccEEEccCCCCC
Q 005542 345 KSCVLVSLKLNGNRLEGPLPPSL----VNCRHLEVIDVGNNQIN 384 (691)
Q Consensus 345 ~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~ 384 (691)
..|+.|++++|++. .+|..+ ..++.+..|++.+|.++
T Consensus 388 --~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 --AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 24555555555555 333322 22344555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.6e-19 Score=185.57 Aligned_cols=282 Identities=22% Similarity=0.229 Sum_probs=138.5
Q ss_pred EEEccCCCCC-CCCCccccCCCCCCEEEeeCCcCCCC----cCcccCCCCCCCEEEccCCcccc------cCcccccCCC
Q 005542 232 YLRLSGNHLE-GPLPPSLSNCVNLQVLDVGNNNLSGP----IPECLGNSTRLSFLDVRNNNLSG------PIPECLGNST 300 (691)
Q Consensus 232 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~l~ 300 (691)
.|+|..+.++ ......+..+..|++|+++++.++.. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666665 33344455666678888887776432 34445556667777777666552 1223444555
Q ss_pred CCcEEEccCccccccccchhhc-cC---CCeEEccCCcccccCCccccCCCCccEEEccCCcccCCCCccccCC-CCccE
Q 005542 301 SLSFLDVGNNSLSGPIPEYLGN-ST---LEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNC-RHLEV 375 (691)
Q Consensus 301 ~L~~L~L~~n~l~~~~~~~~~~-~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~ 375 (691)
+|+.|++++|.+.+..+..+.. .. |+.|++++|.+++.... .+...+..+ ++|+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~--------------------~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR--------------------LLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH--------------------HHHHHHHhCCCCceE
Confidence 6666666666655433322211 12 44444444444321000 111122233 44555
Q ss_pred EEccCCCCCcC----cchhhcCCCCccEEEcccCcCcCcCCCCC--CCCCCCCccEEEcCCCcCccCCChHhhhcccccc
Q 005542 376 IDVGNNQINET----FPHWLDVLPELQVLTLRSNRFCGPIGDTK--TRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMM 449 (691)
Q Consensus 376 L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~ 449 (691)
|++++|.+++. ++..+..+++|++|++++|.+.+...... ....+++|+.|++++|.+++.....+...
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~----- 216 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET----- 216 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-----
Confidence 55555554421 12233344455555555555442110000 00123456666666665543211111000
Q ss_pred cccCCccccccccccccccceeeEEEecCCchhhhhhcccccEEEccCCcccccCChhhhc-----cCCCcceecccccc
Q 005542 450 RRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGK-----LNSLKSLNISHNNL 524 (691)
Q Consensus 450 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l 524 (691)
...+++|++|++++|.+++.....+.. .+.|+.|++++|.+
T Consensus 217 ----------------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 217 ----------------------------------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred ----------------------------------hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 011456666666666666533322221 25677777777776
Q ss_pred cc----CccccccCCCCCCEEeCCCCcCCCc----CcccccCC-CCCCEEEccCCee
Q 005542 525 TG----GIPSSLRNLTELESLDLSSNKLAGR----IPTQLASL-NYLSVLNLSNNQL 572 (691)
Q Consensus 525 ~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l 572 (691)
+. .+++.+..+++|+.+++++|.++.. ....+... +.|+++++.+|++
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 52 2334555567777777777777744 33333344 5677777777653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=6.2e-19 Score=182.68 Aligned_cols=281 Identities=26% Similarity=0.302 Sum_probs=162.3
Q ss_pred EEeccCccCccc-CCCCCCcccccCCCCccEEEccCCCCCCC----CCccccCCCCCCEEEeeCCcCCC------CcCcc
Q 005542 203 FLTLDSNLLQGS-LPNLPPHMTYAKGCNLTYLRLSGNHLEGP----LPPSLSNCVNLQVLDVGNNNLSG------PIPEC 271 (691)
Q Consensus 203 ~L~L~~n~l~~~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~ 271 (691)
.|+|..+.+++. ....+.. +.+|+.++++++.++.. ++..+...+++++++++++.+.+ .++..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~-----l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 76 (319)
T cd00116 2 QLSLKGELLKTERATELLPK-----LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76 (319)
T ss_pred ccccccCcccccchHHHHHH-----HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHH
Confidence 467777777632 2222223 66799999999998642 45556678889999999998762 23456
Q ss_pred cCCCCCCCEEEccCCcccccCcccccCCCC---CcEEEccCccccccccch----h-hc-cCCCeEEccCCccccc----
Q 005542 272 LGNSTRLSFLDVRNNNLSGPIPECLGNSTS---LSFLDVGNNSLSGPIPEY----L-GN-STLEVLDMRMNKFSGS---- 338 (691)
Q Consensus 272 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~~~~~~----~-~~-~~L~~L~L~~n~l~~~---- 338 (691)
+..+++|+.|++++|.+.+..+..+..+.. |+.|++++|++.+..... + .. .+|+.|++++|.+++.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 677899999999999998666666655555 999999999987422211 1 12 3566666666665532
Q ss_pred CCccccCCCCccEEEccCCcccCC----CCccccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCC
Q 005542 339 LPQTFGKSCVLVSLKLNGNRLEGP----LPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDT 414 (691)
Q Consensus 339 ~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 414 (691)
++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+. ..
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~--------------------~~ 216 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA--------------------ET 216 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH--------------------HH
Confidence 222333444555555555554421 111223334455555555444332211110 01
Q ss_pred CCCCCCCCccEEEcCCCcCccCCChHhhhcccccccccCCccccccccccccccceeeEEEecCCchhhhhhcccccEEE
Q 005542 415 KTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATID 494 (691)
Q Consensus 415 ~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 494 (691)
...+++|++|++++|.+++.....+...+. ...+.|+.|+
T Consensus 217 --~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~--------------------------------------~~~~~L~~L~ 256 (319)
T cd00116 217 --LASLKSLEVLNLGDNNLTDAGAAALASALL--------------------------------------SPNISLLTLS 256 (319)
T ss_pred --hcccCCCCEEecCCCcCchHHHHHHHHHHh--------------------------------------ccCCCceEEE
Confidence 123456666666666655321111111000 0035677777
Q ss_pred ccCCcccc----cCChhhhccCCCcceeccccccccC----ccccccCC-CCCCEEeCCCCcC
Q 005542 495 LSSNRFQG----EISEVLGKLNSLKSLNISHNNLTGG----IPSSLRNL-TELESLDLSSNKL 548 (691)
Q Consensus 495 Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l 548 (691)
+++|.++. .+...+..+++|+.+++++|.++.. +...+... +.|++|++.+|.+
T Consensus 257 l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 77777652 2334555667778888888877744 33344444 6777777777653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=2.1e-17 Score=142.68 Aligned_cols=155 Identities=32% Similarity=0.590 Sum_probs=87.8
Q ss_pred CCCCccEEEccCCcccCCCCccccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCcc
Q 005542 345 KSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLR 424 (691)
Q Consensus 345 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 424 (691)
.+.+++.|.+++|+++ .+|+.+..+.+|+.|++++|++.+ .|..++.+++|+.|++.-|++. ..|..+ +.+|.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCcccc--CCCchhh
Confidence 3455666677777776 555667777777777777777754 4555666777777777766654 223333 4556666
Q ss_pred EEEcCCCcCcc-CCChHhhhcccccccccCCccccccccccccccceeeEEEecCCchhhhhhcccccEEEccCCccccc
Q 005542 425 IIDLSYNQFTG-VLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGE 503 (691)
Q Consensus 425 ~L~ls~n~l~~-~~p~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 503 (691)
+||+.+|++.. .+|..+|. ++.|+.|+|+.|.+. .
T Consensus 106 vldltynnl~e~~lpgnff~-------------------------------------------m~tlralyl~dndfe-~ 141 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFY-------------------------------------------MTTLRALYLGDNDFE-I 141 (264)
T ss_pred hhhccccccccccCCcchhH-------------------------------------------HHHHHHHHhcCCCcc-c
Confidence 66666665542 22322211 344455555555554 3
Q ss_pred CChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCcCC
Q 005542 504 ISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 549 (691)
Q Consensus 504 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 549 (691)
+|..++.+++||.|.+..|.+. .+|..++.++.|++|++.+|+++
T Consensus 142 lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 4444555555555555555555 45555555555555555555555
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=2.9e-15 Score=166.68 Aligned_cols=118 Identities=36% Similarity=0.615 Sum_probs=105.3
Q ss_pred cccEEEccCCcccccCChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCcCCCcCcccccCCCCCCEEEcc
Q 005542 489 TFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 568 (691)
Q Consensus 489 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 568 (691)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeccCCCCCC--CCccCCcccCCCCCCCCCCCCCCCC
Q 005542 569 NNQLEGPIPGGPQ--FNTFGIDSYSGNVGLCGFPLSKICR 606 (691)
Q Consensus 569 ~N~l~g~ip~~~~--~~~~~~~~~~gn~~lcg~~l~~~c~ 606 (691)
+|+++|.+|.... +.......+.+|+.+||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997522 1223345688999999987655663
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=3.4e-17 Score=141.35 Aligned_cols=157 Identities=31% Similarity=0.494 Sum_probs=107.9
Q ss_pred CCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEE
Q 005542 227 GCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLD 306 (691)
Q Consensus 227 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 306 (691)
+.+++.|.+++|+++ .+|+.++.+.+|+.|++.+|+++ .+|..+..+++|+.|++.-|++. ..|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 456777778888877 56667778888888888888876 56777777778888887777776 6677777777777777
Q ss_pred ccCccccccccchhhccCCCeEEccCCcccccCCccccCCCCccEEEccCCcccCCCCccccCCCCccEEEccCCCCCcC
Q 005542 307 VGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINET 386 (691)
Q Consensus 307 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 386 (691)
+..|++... .+|..|-.+..|+.|++++|.+. .+|..++.+++|+.|.+..|.+-.
T Consensus 109 ltynnl~e~----------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~- 164 (264)
T KOG0617|consen 109 LTYNNLNEN----------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS- 164 (264)
T ss_pred ccccccccc----------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-
Confidence 777766531 34444555556666666666665 566666666666666666666542
Q ss_pred cchhhcCCCCccEEEcccCcCcCc
Q 005542 387 FPHWLDVLPELQVLTLRSNRFCGP 410 (691)
Q Consensus 387 ~~~~~~~l~~L~~L~L~~n~l~~~ 410 (691)
.|..++.++.|++|++.+|+++-.
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeec
Confidence 556666666667777776666533
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.28 E-value=1.6e-11 Score=136.96 Aligned_cols=113 Identities=33% Similarity=0.503 Sum_probs=101.7
Q ss_pred CccEEEcCCCcCccCCChHhhhcccccccccCCccccccccccccccceeeEEEecCCchhhhhhcccccEEEccCCccc
Q 005542 422 KLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQ 501 (691)
Q Consensus 422 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 501 (691)
.++.|+|++|.+.|.+|..+.. +++|+.|+|++|.+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~-------------------------------------------L~~L~~L~Ls~N~l~ 455 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK-------------------------------------------LRHLQSINLSGNSIR 455 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC-------------------------------------------CCCCCEEECCCCccc
Confidence 4788999999999998865321 688999999999999
Q ss_pred ccCChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCcCCCcCcccccCC-CCCCEEEccCCeeeccCC
Q 005542 502 GEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIP 577 (691)
Q Consensus 502 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip 577 (691)
|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++|+++|.+|..+..+ ..+..+++++|+..|.+|
T Consensus 456 g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999998764 467899999998776665
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=5.7e-11 Score=126.68 Aligned_cols=177 Identities=38% Similarity=0.494 Sum_probs=81.6
Q ss_pred CCccEEEccCCCCCCchhhhhCCC-CCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCCC--CCCCcCEEe
Q 005542 129 PNLWALGLSACNISEFPDILKTQH-QLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHL--PWKNLEFLT 205 (691)
Q Consensus 129 ~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~ 205 (691)
+.++.|++.+|.++++|....... +|+.|++++|.+. .+|..+..+ ++|+.|++++|+++...+. ..++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l--~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNL--PNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhcc--ccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 334444444444444444333332 4444444444443 332333333 4444444444444443332 334444444
Q ss_pred ccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccC
Q 005542 206 LDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRN 285 (691)
Q Consensus 206 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 285 (691)
+++|++.. +|..... ...|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..+..+++++.|++++
T Consensus 193 ls~N~i~~-l~~~~~~-----~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 193 LSGNKISD-LPPEIEL-----LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSN 264 (394)
T ss_pred ccCCcccc-Cchhhhh-----hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccc
Confidence 44444432 1221111 223555555555322 233445555555555555555542 244555556666666666
Q ss_pred CcccccCcccccCCCCCcEEEccCccccccccc
Q 005542 286 NNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPE 318 (691)
Q Consensus 286 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 318 (691)
|.++.... +..+.+++.|++++|.+....+.
T Consensus 265 n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 265 NQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccccc--ccccCccCEEeccCccccccchh
Confidence 66653322 55566666666666666544443
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.3e-11 Score=122.85 Aligned_cols=159 Identities=28% Similarity=0.197 Sum_probs=109.3
Q ss_pred CCCCCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCccCccccCh-hhhcCCCCCCEEEccCCCceee
Q 005542 41 YPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVEL-YDFAKLKNLKYLILSNISLSVS 119 (691)
Q Consensus 41 ~~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n~~~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~ 119 (691)
++++|+.+.|.+...... + +-.....|++++.||||+|-+..--+. .....+++|+.|+|+.|.+...
T Consensus 119 n~kkL~~IsLdn~~V~~~-~----------~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDA-G----------IEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred hHHhhhheeecCcccccc-c----------hhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 467888888888776511 0 003566799999999999988743232 3456799999999999985433
Q ss_pred eeccCCCCCCCccEEEccCCCCC--CchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCC--
Q 005542 120 TKLTVNSSFPNLWALGLSACNIS--EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH-- 195 (691)
Q Consensus 120 ~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~-- 195 (691)
..-.....+++|+.|.|+.|+++ ++-..+..+|+|+.|+|.+|............+ +.|+.|||++|.+...+.
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~--~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL--QTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh--hHHhhccccCCccccccccc
Confidence 22222235889999999999998 455566778999999999985322222223333 788888888888777653
Q ss_pred --CCCCCcCEEeccCccCc
Q 005542 196 --LPWKNLEFLTLDSNLLQ 212 (691)
Q Consensus 196 --~~~~~L~~L~L~~n~l~ 212 (691)
..++.|+.|+++.+.+.
T Consensus 266 ~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred ccccccchhhhhccccCcc
Confidence 45677777777766655
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=3.3e-12 Score=130.71 Aligned_cols=192 Identities=27% Similarity=0.400 Sum_probs=105.3
Q ss_pred cCEEeccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCE
Q 005542 201 LEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSF 280 (691)
Q Consensus 201 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 280 (691)
-...|++.|++. .+|..... +..|+.+.+..|.+. .+|..++++..|.+|+|+.|+++ .+|..+..+ -|+.
T Consensus 77 t~~aDlsrNR~~-elp~~~~~-----f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkv 147 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACA-----FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKV 147 (722)
T ss_pred hhhhhccccccc-cCchHHHH-----HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-ccee
Confidence 344555666554 33333333 334555666666655 55566666666666666666665 344444333 3566
Q ss_pred EEccCCcccccCcccccCCCCCcEEEccCccccccccchhhccCCCeEEccCCcccccCCccccCCCCccEEEccCCccc
Q 005542 281 LDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLE 360 (691)
Q Consensus 281 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 360 (691)
|-+++|+++ .+|..++....|..|+.+.|.+....+...+..+|+.|.+..|++. .+|..+..+ .|..||++.|+++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 666666666 4555566566666666666666644444444446666666666655 344444433 3566666666666
Q ss_pred CCCCccccCCCCccEEEccCCCCCcCcchhh---cCCCCccEEEcccCc
Q 005542 361 GPLPPSLVNCRHLEVIDVGNNQINETFPHWL---DVLPELQVLTLRSNR 406 (691)
Q Consensus 361 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~ 406 (691)
.+|-.|..|+.|++|.|.+|.+.. .|..+ +...-.++|+..-|+
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 556666666666666666666643 22222 123334555555553
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.2e-11 Score=121.20 Aligned_cols=159 Identities=23% Similarity=0.196 Sum_probs=89.7
Q ss_pred cCCCCCCEEEccCCCceeeeeccCCCCCCCccEEEccCCCCCCc---hhhhhCCCCCCEEEccCCcCCccCChhHhhcCc
Q 005542 101 AKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEF---PDILKTQHQLDWLDLSENQIRGRIPSWMWDIGV 177 (691)
Q Consensus 101 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~ 177 (691)
+++++|+.+.|.++.....+.-.....|++++.|+|++|-+..+ ......+++|+.|+|+.|++......... ..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhh
Confidence 45677777778777643333222223477888888888776633 34556778888888888876532222111 122
Q ss_pred CcccEEECCCCcCCccCC----CCCCCcCEEeccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCC-CccccCCC
Q 005542 178 HTLFRLDLSRNFLTSIDH----LPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPL-PPSLSNCV 252 (691)
Q Consensus 178 ~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~ 252 (691)
+.|+.|.++.|.++.-.. ..|++|+.|+|..|.....-..... -++.|+.|||++|.+.... -...+.++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-----i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-----ILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-----hhhHHhhccccCCccccccccccccccc
Confidence 667777777777764332 4567777777777642111111111 1445666777766655221 12345566
Q ss_pred CCCEEEeeCCcCC
Q 005542 253 NLQVLDVGNNNLS 265 (691)
Q Consensus 253 ~L~~L~L~~n~l~ 265 (691)
.|+.|+++.+.+.
T Consensus 272 ~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 272 GLNQLNLSSTGIA 284 (505)
T ss_pred chhhhhccccCcc
Confidence 6666666666554
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=2.8e-11 Score=114.34 Aligned_cols=87 Identities=32% Similarity=0.422 Sum_probs=62.6
Q ss_pred cccccEEEccCCcccccCChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCcCCCcC-cccccCCCCCCEE
Q 005542 487 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRI-PTQLASLNYLSVL 565 (691)
Q Consensus 487 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 565 (691)
+++|+.||||+|.++.. -..=..+.+.++|+|++|.+... ..++.|-+|..||+++|++.... -..++++|.|+.+
T Consensus 328 L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 45666666666666532 22233466788888888887643 46778888999999999887432 3568889999999
Q ss_pred EccCCeeeccC
Q 005542 566 NLSNNQLEGPI 576 (691)
Q Consensus 566 ~ls~N~l~g~i 576 (691)
.|.+|++.+.+
T Consensus 405 ~L~~NPl~~~v 415 (490)
T KOG1259|consen 405 RLTGNPLAGSV 415 (490)
T ss_pred hhcCCCccccc
Confidence 99999998764
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=7.6e-12 Score=121.13 Aligned_cols=251 Identities=21% Similarity=0.190 Sum_probs=144.2
Q ss_pred CCCCCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCcc---CccccCh------hhhcCCCCCCEEEc
Q 005542 41 YPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNN---FSGSVEL------YDFAKLKNLKYLIL 111 (691)
Q Consensus 41 ~~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n~---~~~~i~~------~~l~~l~~L~~L~L 111 (691)
....+++|+||+|.+.-.-.. .+.+.+.+.+.|+..++|.-- ....+|. .++..+++|++|||
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~--------~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAAR--------AIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred ccCceEEEeccCCchhHHHHH--------HHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 356788888888887632211 234566677788888887532 1123331 34566778888888
Q ss_pred cCCCceeeeeccCC---CCCCCccEEEccCCCCCCchh-hhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCC
Q 005542 112 SNISLSVSTKLTVN---SSFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSR 187 (691)
Q Consensus 112 s~n~l~~~~~~~~~---~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~ 187 (691)
|+|.++..+..+.. .++..|++|.|.+|.+..... .++. -|..|. .+. .+| . .+.|+++...+
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k---k~~----~--~~~Lrv~i~~r 166 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK---KAA----S--KPKLRVFICGR 166 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh---ccC----C--CcceEEEEeec
Confidence 88875444332221 136666677777666652211 1000 000000 000 000 0 14455555555
Q ss_pred CcCCccCC-------CCCCCcCEEeccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCC----CCccccCCCCCCE
Q 005542 188 NFLTSIDH-------LPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGP----LPPSLSNCVNLQV 256 (691)
Q Consensus 188 n~l~~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~ 256 (691)
|.+..... ...+.|+.+.+..|.+....... ....+..+++|+.|||..|.++.. +...+..+++|++
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a-l~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA-LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHH-HHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 55444332 22366777777777665332211 112344588888888888887733 2345667788899
Q ss_pred EEeeCCcCCCCcCccc-----CCCCCCCEEEccCCccccc----CcccccCCCCCcEEEccCcccc
Q 005542 257 LDVGNNNLSGPIPECL-----GNSTRLSFLDVRNNNLSGP----IPECLGNSTSLSFLDVGNNSLS 313 (691)
Q Consensus 257 L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 313 (691)
|++++|.+......++ ...++|++|.+.+|.++.. +...+...+.|..|+|++|.+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9999888865433332 2367899999999988742 2223455788999999999983
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=2.8e-10 Score=121.44 Aligned_cols=197 Identities=32% Similarity=0.416 Sum_probs=153.3
Q ss_pred EEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeeccCCCC-C-CCccEEEccCCCCCCchhhhhCCCCCCEEEcc
Q 005542 83 FVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSS-F-PNLWALGLSACNISEFPDILKTQHQLDWLDLS 160 (691)
Q Consensus 83 ~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls 160 (691)
.++++.|.+...+. .+..++.++.|++.+|.++ .++.... + .+|+.|++++|.+..+|..+..+++|+.|+++
T Consensus 97 ~l~~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~---~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSNIS--ELLELTNLTSLDLDNNNIT---DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccccCch--hhhcccceeEEecCCcccc---cCccccccchhhcccccccccchhhhhhhhhccccccccccC
Confidence 68888888743333 5667788999999999843 3333333 4 38999999999999998889999999999999
Q ss_pred CCcCCccCChhHhhcCcCcccEEECCCCcCCccCCC--CCCCcCEEeccCccCcccCCCCCCcccccCCCCccEEEccCC
Q 005542 161 ENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHL--PWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGN 238 (691)
Q Consensus 161 ~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 238 (691)
+|+++ .+|...... +.|+.|++++|++..+... ....|++|.+++|.+. ..+..+.. +.++..+.+.+|
T Consensus 172 ~N~l~-~l~~~~~~~--~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~-----~~~l~~l~l~~n 242 (394)
T COG4886 172 FNDLS-DLPKLLSNL--SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSN-----LKNLSGLELSNN 242 (394)
T ss_pred Cchhh-hhhhhhhhh--hhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhh-----cccccccccCCc
Confidence 99998 666655455 8999999999999998884 5566999999999533 22233333 667888888888
Q ss_pred CCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccc
Q 005542 239 HLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECL 296 (691)
Q Consensus 239 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 296 (691)
++. ..+..++.++++++|++++|.++...+ ++.+.+++.|++++|.+....+...
T Consensus 243 ~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 243 KLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred eee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 887 346778889999999999999985433 8899999999999999987666543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.6e-10 Score=105.43 Aligned_cols=108 Identities=31% Similarity=0.389 Sum_probs=34.0
Q ss_pred CCCCCcEEECcCCcccccCCCCCCCCccccCCcccc-CCCCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceee
Q 005542 41 YPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIF-ELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVS 119 (691)
Q Consensus 41 ~~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~-~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~ 119 (691)
++.++++|+|++|.|+ .| +.++ .+.+|+.|||++|.|+ .++ .+..+++|++|++++|.|+..
T Consensus 17 n~~~~~~L~L~~n~I~-------------~I-e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-------------TI-ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-
T ss_pred cccccccccccccccc-------------cc-cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcc
Confidence 4566778888887776 22 3444 4667778888888777 555 577777788888877775443
Q ss_pred eeccCCCCCCCccEEEccCCCCCCch--hhhhCCCCCCEEEccCCcCCc
Q 005542 120 TKLTVNSSFPNLWALGLSACNISEFP--DILKTQHQLDWLDLSENQIRG 166 (691)
Q Consensus 120 ~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~ 166 (691)
+.. ....+++|++|++++|+|.++. ..+..+++|++|++.+|.++.
T Consensus 80 ~~~-l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 80 SEG-LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp CHH-HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred ccc-hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 210 0113677777777777776442 446667777777777777663
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=2.3e-11 Score=117.80 Aligned_cols=61 Identities=21% Similarity=0.376 Sum_probs=36.6
Q ss_pred ccccEEEccCCcccccCChhh-----hccCCCcceeccccccccC----ccccccCCCCCCEEeCCCCcC
Q 005542 488 TTFATIDLSSNRFQGEISEVL-----GKLNSLKSLNISHNNLTGG----IPSSLRNLTELESLDLSSNKL 548 (691)
Q Consensus 488 ~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l 548 (691)
++|+.|++++|.+...-...+ ...++|++|.+.+|.++.. +..++...+.|+.|+|++|++
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 455555666555543322222 2256777777777777632 334455677888888888888
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=1.3e-11 Score=126.45 Aligned_cols=174 Identities=32% Similarity=0.339 Sum_probs=106.7
Q ss_pred EEEccCCCCCCchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCCC-CCCCcCEEeccCccC
Q 005542 133 ALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHL-PWKNLEFLTLDSNLL 211 (691)
Q Consensus 133 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l 211 (691)
..+|+.|++.++|..+..+..|+.+.|..|.+. .+|..+..+ ..|++||++.|++...... .+--|+.|-+++|++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L--~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNL--EALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhh--hHHHHhhhccchhhcCChhhhcCcceeEEEecCcc
Confidence 344455555555554544555555555555554 455555544 5555555555555544432 123456666666666
Q ss_pred cccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCccccc
Q 005542 212 QGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGP 291 (691)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 291 (691)
+ .+|..++. ...|.+||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+. .-.|..||++.|++. .
T Consensus 156 ~-~lp~~ig~-----~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 156 T-SLPEEIGL-----LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred c-cCCccccc-----chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-e
Confidence 5 44554543 567777777777777 56667777777777777777776 3555555 445777788888777 6
Q ss_pred CcccccCCCCCcEEEccCccccccccchh
Q 005542 292 IPECLGNSTSLSFLDVGNNSLSGPIPEYL 320 (691)
Q Consensus 292 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 320 (691)
+|-.|.+|+.|++|-|.+|.+. ..|..+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 7777788888888888888776 334433
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=6e-11 Score=112.19 Aligned_cols=126 Identities=27% Similarity=0.257 Sum_probs=60.5
Q ss_pred CcccEEECCCCcCCccCC--CCCCCcCEEeccCccCcccCCCCCCcccccCCCCccEEEccCCCCCCCCCccccCCCCCC
Q 005542 178 HTLFRLDLSRNFLTSIDH--LPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQ 255 (691)
Q Consensus 178 ~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 255 (691)
+.|+++|||+|.++.++. .-.+.++.|++++|.+... ..++. +++|+.|||++|.++ .+..+-..+.+.+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~-----L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAE-----LPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhh-----cccceEeecccchhH-hhhhhHhhhcCEe
Confidence 445555555555555544 2235555555555554421 11222 445555555555554 2223333455555
Q ss_pred EEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccC-cccccCCCCCcEEEccCcccc
Q 005542 256 VLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPI-PECLGNSTSLSFLDVGNNSLS 313 (691)
Q Consensus 256 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 313 (691)
+|.|++|.+... ..++.+-+|..||+++|+|.... ...++++|.|+.+.|.+|.+.
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 555555555321 23344445555555555554211 134455555555555555554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=5.1e-10 Score=102.06 Aligned_cols=124 Identities=27% Similarity=0.238 Sum_probs=40.4
Q ss_pred cccCCCCCCEEEccCccCccccChhhhc-CCCCCCEEEccCCCceeeeeccCCCCCCCccEEEccCCCCCCchhhh-hCC
Q 005542 74 SIFELVNLTFVSLSFNNFSGSVELYDFA-KLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDIL-KTQ 151 (691)
Q Consensus 74 ~l~~l~~L~~L~Ls~n~~~~~i~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l-~~l 151 (691)
.+.+..++++|+|++|.|+ .|. .++ .+.+|+.|+|++|.|... .....+++|++|++++|.++.+...+ ..+
T Consensus 14 ~~~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHHHHH-
T ss_pred ccccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccchHHhC
Confidence 3445667889999999887 555 455 578888999988885433 33445788888888888888776544 457
Q ss_pred CCCCEEEccCCcCCccC-ChhHhhcCcCcccEEECCCCcCCccCC------CCCCCcCEEe
Q 005542 152 HQLDWLDLSENQIRGRI-PSWMWDIGVHTLFRLDLSRNFLTSIDH------LPWKNLEFLT 205 (691)
Q Consensus 152 ~~L~~L~Ls~n~l~~~~-p~~~~~~~~~~L~~L~ls~n~l~~~~~------~~~~~L~~L~ 205 (691)
++|++|++++|++...- -..+..+ ++|+.|++.+|.++.... ..+++|+.||
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l--~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSL--PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG---TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCEEECcCCcCCChHHhHHHHcC--CCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 88888888888776421 1233344 666667766666654432 2345555554
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=5.6e-10 Score=127.11 Aligned_cols=129 Identities=28% Similarity=0.270 Sum_probs=103.4
Q ss_pred CCCCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCcc--CccccChhhhcCCCCCCEEEccCCCceee
Q 005542 42 PGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNN--FSGSVELYDFAKLKNLKYLILSNISLSVS 119 (691)
Q Consensus 42 ~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n~--~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~ 119 (691)
....|...+-+|.+. .++.+ .+++.|+.|-+..|. +. .++...|..++.|++|||++|. ..
T Consensus 522 ~~~~rr~s~~~~~~~-------------~~~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~--~l 584 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-------------HIAGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNS--SL 584 (889)
T ss_pred hhheeEEEEeccchh-------------hccCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCC--cc
Confidence 457888888888775 22222 234479999998886 44 6675668999999999999988 77
Q ss_pred eeccCCCC-CCCccEEEccCCCCCCchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCc
Q 005542 120 TKLTVNSS-FPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNF 189 (691)
Q Consensus 120 ~~~~~~~~-l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~ 189 (691)
+.+|...+ +-+||+|+++++.+..+|..+++++.|.+|++..+.-...+|.....+ ++|++|.+....
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL--QSLRVLRLPRSA 653 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhc--ccccEEEeeccc
Confidence 88888776 999999999999999999999999999999999887665667766667 899999886654
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=1.9e-09 Score=80.64 Aligned_cols=59 Identities=36% Similarity=0.563 Sum_probs=30.6
Q ss_pred cccEEEccCCcccccCChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCc
Q 005542 489 TFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNK 547 (691)
Q Consensus 489 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 547 (691)
+|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554444455555555555555555554444455555555555555554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=1.3e-09 Score=81.56 Aligned_cols=61 Identities=46% Similarity=0.623 Sum_probs=57.0
Q ss_pred CCCcceeccccccccCccccccCCCCCCEEeCCCCcCCCcCcccccCCCCCCEEEccCCee
Q 005542 512 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 572 (691)
Q Consensus 512 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 572 (691)
++|++|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999977778999999999999999999988889999999999999999985
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=4.5e-10 Score=119.94 Aligned_cols=85 Identities=28% Similarity=0.294 Sum_probs=54.1
Q ss_pred ccEEEccCCcccccCChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCcCCCc---Cccc-ccCCCCCCEE
Q 005542 490 FATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGR---IPTQ-LASLNYLSVL 565 (691)
Q Consensus 490 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L 565 (691)
|+.+++++|.+.. ++..+..+..+..|++++|.+... ..+...+.+..+....|.+... .... ....+.++.+
T Consensus 234 L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 6677777777763 224466677777888888777744 3455566777777777776522 1111 4456677777
Q ss_pred EccCCeeeccCC
Q 005542 566 NLSNNQLEGPIP 577 (691)
Q Consensus 566 ~ls~N~l~g~ip 577 (691)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 777777776554
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=7.2e-10 Score=118.36 Aligned_cols=241 Identities=29% Similarity=0.280 Sum_probs=112.8
Q ss_pred CCCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeeccCCCCCCCccEEEccCCCCCCchhhhhCCCCCCEE
Q 005542 78 LVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWL 157 (691)
Q Consensus 78 l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 157 (691)
+..++.+++..|.+. .+. ..+..+++|+.|++.+|.|...... ...+++|++|++++|.|+.+.. +..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhh-hhh-cccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccc-hhhccchhhh
Confidence 334444444444444 222 2344455555555555543222110 2234555555555555554421 3334445555
Q ss_pred EccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCC---CCCCCcCEEeccCccCcccCCCCCCcccccCCCCccEEE
Q 005542 158 DLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLR 234 (691)
Q Consensus 158 ~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~ 234 (691)
++++|.+.. +.. +..+ ..|+.+++++|.+..... ..+.+++.+.+++|.+...-.. .. +..+..++
T Consensus 146 ~l~~N~i~~-~~~-~~~l--~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~--~~-----~~~l~~~~ 214 (414)
T KOG0531|consen 146 NLSGNLISD-ISG-LESL--KSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGL--DL-----LKKLVLLS 214 (414)
T ss_pred eeccCcchh-ccC-Cccc--hhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccch--HH-----HHHHHHhh
Confidence 555555541 111 1112 455555555555555544 4455556666665554422111 11 22334445
Q ss_pred ccCCCCCCCCCccccCCC--CCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEEccCccc
Q 005542 235 LSGNHLEGPLPPSLSNCV--NLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSL 312 (691)
Q Consensus 235 L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 312 (691)
+..|.++..- .+..+. +|+.+++++|.+.. .+..+..+..+..|++..|++... ..+...+.+..+....|.+
T Consensus 215 l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 215 LLDNKISKLE--GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred cccccceecc--CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence 5555555221 112222 26667777776652 224455666777777777766533 2234455566666666665
Q ss_pred ccc---ccc--hhhccCCCeEEccCCcccccC
Q 005542 313 SGP---IPE--YLGNSTLEVLDMRMNKFSGSL 339 (691)
Q Consensus 313 ~~~---~~~--~~~~~~L~~L~L~~n~l~~~~ 339 (691)
... ... ......++.+.+..|.+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cchhhhhccccccccccccccccccCcccccc
Confidence 422 111 112236666677766665443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.6e-08 Score=115.42 Aligned_cols=294 Identities=22% Similarity=0.236 Sum_probs=143.9
Q ss_pred CCCccEEEccCCC--CCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcE
Q 005542 227 GCNLTYLRLSGNH--LEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSF 304 (691)
Q Consensus 227 ~~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 304 (691)
++.|+.|-+..|. +.....+.|..++.|++|||++|.--+.+|..++.+-+|++|+++++.+. .+|..+.++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3355666666554 33233334555666666666666555566666666666666666666666 56666666666666
Q ss_pred EEccCccccccccchhh-ccCCCeEEccCCcc--cccCCccccCCCCccEEEccCCcccCCCCccccCCCCcc----EEE
Q 005542 305 LDVGNNSLSGPIPEYLG-NSTLEVLDMRMNKF--SGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLE----VID 377 (691)
Q Consensus 305 L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~ 377 (691)
|++..+.....+|.... ..+|++|.+..... ....-..+..+.+|+.+........ +-..+..+++|. .+.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~--~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL--LLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH--hHhhhhhhHHHHHHhHhhh
Confidence 66666654444444443 44666666654331 1112223344455555544333320 111122233332 233
Q ss_pred ccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhcccccccccCCccc
Q 005542 378 VGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 457 (691)
Q Consensus 378 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~ 457 (691)
+.++.. ...+..+..+.+|+.|.+.++.......... ...+.++ ++..+..........
T Consensus 701 ~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~-----~~~~~~~-------------~f~~l~~~~~~~~~~-- 759 (889)
T KOG4658|consen 701 IEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWE-----ESLIVLL-------------CFPNLSKVSILNCHM-- 759 (889)
T ss_pred hccccc-ceeecccccccCcceEEEEcCCCchhhcccc-----cccchhh-------------hHHHHHHHHhhcccc--
Confidence 222222 2233445667777888777777653322111 1111111 000000000000000
Q ss_pred cccccccccccceeeEEEecCCchhhhhhcccccEEEccCCcccccCChhhhccCCCcceeccccccccC-ccccccCCC
Q 005542 458 VNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGG-IPSSLRNLT 536 (691)
Q Consensus 458 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~ 536 (691)
.....+....++|+.|.+..+.....+......+..++.+-+..+.+.+. .-...+.++
T Consensus 760 --------------------~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~ 819 (889)
T KOG4658|consen 760 --------------------LRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLP 819 (889)
T ss_pred --------------------ccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCc
Confidence 00011112267888899888887766666666677777766666666654 223334444
Q ss_pred CCCEEeCCCCcCCCcCcccccCCCCCCEEEccCCeeeccCCC
Q 005542 537 ELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 578 (691)
Q Consensus 537 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 578 (691)
++..+.++.=. |+.+.+..|+-.+..|.
T Consensus 820 ~i~~~~l~~~~--------------l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 820 QLYWLPLSFLK--------------LEELIVEECPKLGKLPL 847 (889)
T ss_pred eeEecccCccc--------------hhheehhcCcccccCcc
Confidence 44433333222 55555555555555553
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=6.4e-09 Score=98.72 Aligned_cols=159 Identities=25% Similarity=0.188 Sum_probs=75.9
Q ss_pred CCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeeccCCC-CCCCccEEEccCC-CCCC--chhhhhCCCCCC
Q 005542 80 NLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSAC-NISE--FPDILKTQHQLD 155 (691)
Q Consensus 80 ~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~ 155 (691)
.|++||||+..|+-.--...++.|++|+.|.|.+++ ....+.... .-.+|+.|+++.| ++++ +.-.+..++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc--cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 366666666555421111344556666666665555 222222111 2345555555554 2332 234567788888
Q ss_pred EEEccCCcCCccCChh-HhhcCcCcccEEECCCCcCCccCCCCCCCcCEEeccCccCcccCCCCCCcccccCCCCccEEE
Q 005542 156 WLDLSENQIRGRIPSW-MWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLR 234 (691)
Q Consensus 156 ~L~Ls~n~l~~~~p~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~ 234 (691)
.|+|++|.+....... +...+ ++|+.|+++++.-. |.. +.+. .. ..++++|.+||
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~his-e~l~~LNlsG~rrn---------l~~-----sh~~----tL-----~~rcp~l~~LD 319 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHIS-ETLTQLNLSGYRRN---------LQK-----SHLS----TL-----VRRCPNLVHLD 319 (419)
T ss_pred hcCchHhhccchhhhHHHhhhc-hhhhhhhhhhhHhh---------hhh-----hHHH----HH-----HHhCCceeeec
Confidence 8888888765433221 11221 44555555443310 000 0000 00 11266677777
Q ss_pred ccCCC-CCCCCCccccCCCCCCEEEeeCCcC
Q 005542 235 LSGNH-LEGPLPPSLSNCVNLQVLDVGNNNL 264 (691)
Q Consensus 235 L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l 264 (691)
|++|. ++......|..++.|++|.++.|..
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhcC
Confidence 77653 3322223445566777777776653
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.7e-08 Score=95.94 Aligned_cols=59 Identities=24% Similarity=0.215 Sum_probs=32.1
Q ss_pred hccCCCcceeccccc-cccCccccccCCCCCCEEeCCCCcCCCcCccc---ccCCCCCCEEEccC
Q 005542 509 GKLNSLKSLNISHNN-LTGGIPSSLRNLTELESLDLSSNKLAGRIPTQ---LASLNYLSVLNLSN 569 (691)
Q Consensus 509 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~ls~ 569 (691)
..+++|..||||+|. ++...-..|-+++.|++|.++.|.. .+|.. +...|+|.+||+-+
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 345666666666553 2222223455566666666666653 34443 34556677776643
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1e-07 Score=90.68 Aligned_cols=105 Identities=24% Similarity=0.234 Sum_probs=63.5
Q ss_pred CCCCCEEEccCCCceeeeeccCCC-CCCCccEEEccCCCCC---CchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcC
Q 005542 103 LKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNIS---EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVH 178 (691)
Q Consensus 103 l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~ 178 (691)
.+.++.|.+.++.|...|....+. .++.+++++|.+|.|+ ++...+.++|.|++|+|+.|.+...|...- ++..
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~ 121 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLK 121 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--cccc
Confidence 334555555565544444433322 3677888888888887 445567788888888888888775443221 1236
Q ss_pred cccEEECCCCcCCccCC----CCCCCcCEEeccCc
Q 005542 179 TLFRLDLSRNFLTSIDH----LPWKNLEFLTLDSN 209 (691)
Q Consensus 179 ~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n 209 (691)
+|+.|-|.+..+..... ..++.++.|+++.|
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 77777777666544322 23455666666655
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=4.2e-08 Score=103.84 Aligned_cols=191 Identities=22% Similarity=0.197 Sum_probs=116.4
Q ss_pred CCCCCEEEeeCCcCCCCc-CcccCCCCCCCEEEccCCcccccCcccccCC-CCCcEEEccCcccc----------ccccc
Q 005542 251 CVNLQVLDVGNNNLSGPI-PECLGNSTRLSFLDVRNNNLSGPIPECLGNS-TSLSFLDVGNNSLS----------GPIPE 318 (691)
Q Consensus 251 l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~----------~~~~~ 318 (691)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+.. ...+..+ ..|+.|.- .|.+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhcccccc
Confidence 345555555443322222 5667778899999999888763 1111111 12333322 12111 11111
Q ss_pred hhhccCCCeEEccCCcccccCCccccCCCCccEEEccCCcccCCCCccccCCCCccEEEccCCCCCcCcchhhcCCCCcc
Q 005542 319 YLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQ 398 (691)
Q Consensus 319 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 398 (691)
.+....|.+.+.++|.+. .....+.-++.|+.|+|++|+++.. ..+..++.|++|||+.|.+....--....+. |.
T Consensus 160 s~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred chhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-he
Confidence 111226777888888876 5566677778888899999988854 2678888899999999988754333333444 88
Q ss_pred EEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhccccccccc
Q 005542 399 VLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRD 452 (691)
Q Consensus 399 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~ 452 (691)
.|.+++|.++..... .++.+|+.||+++|-+.+.--...+..+..|..+.
T Consensus 236 ~L~lrnN~l~tL~gi----e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 236 LLNLRNNALTTLRGI----ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred eeeecccHHHhhhhH----HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence 889998887644322 45788888999998887765444444444444333
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=4.7e-08 Score=82.21 Aligned_cols=83 Identities=28% Similarity=0.400 Sum_probs=43.6
Q ss_pred cccEEEccCCcccccCChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCcCCCcCcccccCCCCCCEEEcc
Q 005542 489 TFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 568 (691)
Q Consensus 489 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 568 (691)
.|+..+|++|.+...++..-..++.+++|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..|.+|-+||.-
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 4445555555555333332233345555666666655 45555555566666666666555 344445455555555555
Q ss_pred CCeee
Q 005542 569 NNQLE 573 (691)
Q Consensus 569 ~N~l~ 573 (691)
+|.+.
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55443
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=1.7e-08 Score=106.77 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=63.3
Q ss_pred CCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEEccCccccccccchhhc-cCCCeEEcc
Q 005542 253 NLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDMR 331 (691)
Q Consensus 253 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~ 331 (691)
.|.+.+.++|.+. .+..++.-++.|+.|+|++|+++.. +.+..++.|++|||+.|.+. .+|..-.. ..|+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 3555555666554 3444555556666666666666533 24556666666666666665 33332111 145556666
Q ss_pred CCcccccCCccccCCCCccEEEccCCcccCCC-CccccCCCCccEEEccCCCC
Q 005542 332 MNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPL-PPSLVNCRHLEVIDVGNNQI 383 (691)
Q Consensus 332 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l 383 (691)
+|.++.. ..+.++.+|+.||+++|-+.+.- -..++.+..|+.|.|.+|.+
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5555422 23344555555555555554320 01233444555555555544
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=1.7e-06 Score=82.62 Aligned_cols=204 Identities=20% Similarity=0.207 Sum_probs=106.5
Q ss_pred CCCeEEccCCcccc--cCCccccCCCCccEEEccCCcccCCCCccccCCCCccEEEccCCCCCcC-cchhhcCCCCccEE
Q 005542 324 TLEVLDMRMNKFSG--SLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINET-FPHWLDVLPELQVL 400 (691)
Q Consensus 324 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 400 (691)
.++.+||.+|.++. ++...+..+|.|++|+++.|++...+...-....+|+.|-|.+..+.-. ....+..+|.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 66777777777764 2334456778888888888887744322113556778888877766422 22344567777777
Q ss_pred EcccCcCcCcCCCCCCCCC-CCCccEEEcCCCcCccCCChHhhhcccccccccCCccccccccccccccceeeEEEecCC
Q 005542 401 TLRSNRFCGPIGDTKTRVP-FPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGN 479 (691)
Q Consensus 401 ~L~~n~l~~~~~~~~~~~~-~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 479 (691)
+++.|.+.....+.-.... -+.++++..-.|... . +..
T Consensus 152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-----~----w~~-------------------------------- 190 (418)
T KOG2982|consen 152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-----L----WLN-------------------------------- 190 (418)
T ss_pred hhccchhhhhccccccccccchhhhhhhcCCcHHH-----H----HHH--------------------------------
Confidence 7777743211111100000 112222222222110 0 000
Q ss_pred chhhhhhcccccEEEccCCccccc-CChhhhccCCCcceeccccccccC-ccccccCCCCCCEEeCCCCcCCCcCcc---
Q 005542 480 DIQMERILTTFATIDLSSNRFQGE-ISEVLGKLNSLKSLNISHNNLTGG-IPSSLRNLTELESLDLSSNKLAGRIPT--- 554 (691)
Q Consensus 480 ~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~--- 554 (691)
.....+.++++..+-+..|.+... --..+..++.+-.|+|+.|++..- --+.+..+++|..|.+++|.+....-.
T Consensus 191 ~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~er 270 (418)
T KOG2982|consen 191 KNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGER 270 (418)
T ss_pred HHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcc
Confidence 001112255666666666655332 122344556666777777777632 124566677777777777777644322
Q ss_pred ---cccCCCCCCEEEcc
Q 005542 555 ---QLASLNYLSVLNLS 568 (691)
Q Consensus 555 ---~l~~l~~L~~L~ls 568 (691)
.++.|++++.|+=|
T Consensus 271 r~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 271 RFLLIARLTKVQVLNGS 287 (418)
T ss_pred eEEEEeeccceEEecCc
Confidence 14566777776643
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=3.6e-07 Score=85.93 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=19.7
Q ss_pred CCCCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccC
Q 005542 42 PGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSF 88 (691)
Q Consensus 42 ~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~ 88 (691)
+..++.+|||+|.|...... .+...+.+-.+|+..++|.
T Consensus 29 ~d~~~evdLSGNtigtEA~e--------~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAME--------ELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hcceeEEeccCCcccHHHHH--------HHHHHHhhhcceeEeehhh
Confidence 45566666666665432211 2333444555566666554
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=4.3e-06 Score=75.61 Aligned_cols=117 Identities=26% Similarity=0.234 Sum_probs=85.5
Q ss_pred cCCcccCCCCCCCCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCccCccccChhhhcCCCCCCEEEc
Q 005542 32 IPAVTSEGIYPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLIL 111 (691)
Q Consensus 32 ~~~~~~~~~~~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~L 111 (691)
+|...--|....+...+||++|.+... ..|..++.|.+|.|++|+|+ .|...--..+++|+.|.|
T Consensus 31 ip~ienlg~~~d~~d~iDLtdNdl~~l--------------~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 31 IPVIENLGATLDQFDAIDLTDNDLRKL--------------DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred ccchhhccccccccceecccccchhhc--------------ccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence 444444555667788899999887622 34667888899999999988 565233345677899999
Q ss_pred cCCCceeeeeccCCCCCCCccEEEccCCCCCCch----hhhhCCCCCCEEEccCCc
Q 005542 112 SNISLSVSTKLTVNSSFPNLWALGLSACNISEFP----DILKTQHQLDWLDLSENQ 163 (691)
Q Consensus 112 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp----~~l~~l~~L~~L~Ls~n~ 163 (691)
.+|+|...+.+.....+++|++|.+-+|.++.-. ..+..+++|++||...-.
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9988888888877778888888888888877432 346677888888876643
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=6.9e-06 Score=56.11 Aligned_cols=36 Identities=39% Similarity=0.560 Sum_probs=17.5
Q ss_pred CCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCccCc
Q 005542 44 QLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFS 92 (691)
Q Consensus 44 ~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n~~~ 92 (691)
+|++|++++|+|+ .+|..+++|++|++|++++|.|+
T Consensus 2 ~L~~L~l~~N~i~-------------~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-------------DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-------------SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-------------ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555554 33344555555555555555554
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.87 E-value=2.4e-06 Score=80.49 Aligned_cols=215 Identities=20% Similarity=0.147 Sum_probs=131.4
Q ss_pred CCCCcEEECcCCcccccCCCCCCCCccccCC-------ccccCCCCCCEEEccCccCccccCh---hhhcCCCCCCEEEc
Q 005542 42 PGQLRHLDLGNNHFVGKIPASLDNQLIGSIP-------SSIFELVNLTFVSLSFNNFSGSVEL---YDFAKLKNLKYLIL 111 (691)
Q Consensus 42 ~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp-------~~l~~l~~L~~L~Ls~n~~~~~i~~---~~l~~l~~L~~L~L 111 (691)
-++|+..++|.-.. |..-+ ++| +.+-+|++|+..+||.|.|....|. +-+++-+.|.+|.+
T Consensus 57 ~~~L~vvnfsd~ft-gr~kd--------e~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l 127 (388)
T COG5238 57 VRNLRVVNFSDAFT-GRDKD--------ELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKL 127 (388)
T ss_pred hcceeEeehhhhhh-cccHH--------HHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEe
Confidence 45777777776432 22111 222 3456788888888888887644431 34567778888888
Q ss_pred cCCCceeeeeccCC------------CCCCCccEEEccCCCCCCchh-----hhhCCCCCCEEEccCCcCCccCChhH--
Q 005542 112 SNISLSVSTKLTVN------------SSFPNLWALGLSACNISEFPD-----ILKTQHQLDWLDLSENQIRGRIPSWM-- 172 (691)
Q Consensus 112 s~n~l~~~~~~~~~------------~~l~~L~~L~L~~n~l~~lp~-----~l~~l~~L~~L~Ls~n~l~~~~p~~~-- 172 (691)
++|.++..+.-... ..-|.|+......|++...|. .+..-.+|+.+.+..|.|.-.....+
T Consensus 128 ~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~ 207 (388)
T COG5238 128 NNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAF 207 (388)
T ss_pred ecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHH
Confidence 88875443321111 135778888888888874432 33444678888888887763211111
Q ss_pred -hhcCcCcccEEECCCCcCCccCC-------CCCCCcCEEeccCccCcccCCCCC-CcccccCCCCccEEEccCCCCCCC
Q 005542 173 -WDIGVHTLFRLDLSRNFLTSIDH-------LPWKNLEFLTLDSNLLQGSLPNLP-PHMTYAKGCNLTYLRLSGNHLEGP 243 (691)
Q Consensus 173 -~~~~~~~L~~L~ls~n~l~~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~ 243 (691)
+-..+.+|+.||+.+|.++-... ..|+.|+.|.+.+|-++......+ ..+.....++|..|...+|.+.+.
T Consensus 208 ~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 208 LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 11123788888998888876544 356778888888887765433322 222223366788888888866543
Q ss_pred CCcc-----c--cCCCCCCEEEeeCCcCC
Q 005542 244 LPPS-----L--SNCVNLQVLDVGNNNLS 265 (691)
Q Consensus 244 ~~~~-----l--~~l~~L~~L~L~~n~l~ 265 (691)
+-.. + ..++-|..|.+.+|++.
T Consensus 288 ~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 288 IILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred eeeeechhhhhhcccHHHHHHHHccCcch
Confidence 2221 1 23566777778888876
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=2.5e-05 Score=53.37 Aligned_cols=37 Identities=38% Similarity=0.476 Sum_probs=30.5
Q ss_pred CCccEEEccCCCCCCchhhhhCCCCCCEEEccCCcCC
Q 005542 129 PNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIR 165 (691)
Q Consensus 129 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 165 (691)
++|++|++++|+|+++|..+.++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4788888888888888888889999999999999887
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.77 E-value=2.4e-06 Score=72.13 Aligned_cols=83 Identities=28% Similarity=0.458 Sum_probs=43.8
Q ss_pred ccEEEccCCcccccCChh---hhccCCCcceeccccccccCcccccc-CCCCCCEEeCCCCcCCCcCcccccCCCCCCEE
Q 005542 490 FATIDLSSNRFQGEISEV---LGKLNSLKSLNISHNNLTGGIPSSLR-NLTELESLDLSSNKLAGRIPTQLASLNYLSVL 565 (691)
Q Consensus 490 L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 565 (691)
+..+||++|++.. +++. +.....|+..+|++|.+. ..|..|. ..+.++.|+|++|+++ .+|..++.++.|+.+
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 4455555555541 2222 233344555566666666 3333332 3345666666666665 455556666666666
Q ss_pred EccCCeeecc
Q 005542 566 NLSNNQLEGP 575 (691)
Q Consensus 566 ~ls~N~l~g~ 575 (691)
|++.|++...
T Consensus 106 Nl~~N~l~~~ 115 (177)
T KOG4579|consen 106 NLRFNPLNAE 115 (177)
T ss_pred ccccCccccc
Confidence 6666666543
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=7.7e-05 Score=76.83 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=48.5
Q ss_pred ccCCCCccEEEccCCcccCCCCccccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCC
Q 005542 343 FGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPK 422 (691)
Q Consensus 343 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 422 (691)
+..+.+++.|++++|.++ .+|. -..+|+.|.+++|.--..+|..+ .++|+.|++++|.....+ .++
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL--------P~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL--------PES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc--------ccc
Confidence 445678888999988777 4452 23468888888764434455443 257888888887322122 245
Q ss_pred ccEEEcCCCcC
Q 005542 423 LRIIDLSYNQF 433 (691)
Q Consensus 423 L~~L~ls~n~l 433 (691)
|+.|+++.+..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 77777765543
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.0002 Score=73.82 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=8.9
Q ss_pred hcCCCCCCEEEccCCC
Q 005542 100 FAKLKNLKYLILSNIS 115 (691)
Q Consensus 100 l~~l~~L~~L~Ls~n~ 115 (691)
+..+.++++|++++|.
T Consensus 48 ~~~~~~l~~L~Is~c~ 63 (426)
T PRK15386 48 IEEARASGRLYIKDCD 63 (426)
T ss_pred HHHhcCCCEEEeCCCC
Confidence 3345566666666554
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=2.5e-05 Score=87.40 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=46.9
Q ss_pred CCCccEEEccCCCCC--CchhhhhCCCCCCEEEccCCcCCccCChhHhhcCcCcccEEECCCCcCCccCC----CCCCCc
Q 005542 128 FPNLWALGLSACNIS--EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH----LPWKNL 201 (691)
Q Consensus 128 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~L 201 (691)
+|+|+.|.+++-.+. ++.....++++|..||+|+..++.. ..+..+ ++|+.|.+.+=.+..... ..+++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L--knLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRL--KNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcc--ccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 444444444444333 2233334444455555555444421 333333 444444444433333211 334555
Q ss_pred CEEeccCccCcccCCCCCCc--ccccCCCCccEEEccCCCCCCC
Q 005542 202 EFLTLDSNLLQGSLPNLPPH--MTYAKGCNLTYLRLSGNHLEGP 243 (691)
Q Consensus 202 ~~L~L~~n~l~~~~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~ 243 (691)
++||+|........ ..+.. -....+++|+.||.+++.+.+.
T Consensus 223 ~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 223 RVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred Ceeeccccccccch-HHHHHHHHhcccCccccEEecCCcchhHH
Confidence 55555544332111 00000 0001156777777777666543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.58 E-value=0.00013 Score=66.16 Aligned_cols=85 Identities=26% Similarity=0.313 Sum_probs=61.6
Q ss_pred CCccEEEccCCcccCCCCccccCCCCccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEE
Q 005542 347 CVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRII 426 (691)
Q Consensus 347 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 426 (691)
.+...++|++|.+... ..|..++.|..|.+++|+|+.+.|..-..+++|..|.|.+|.+... .+......||.|++|
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-GDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-hhcchhccCCcccee
Confidence 4566778888877633 3577788888888888888887777666778888888888887632 222233567888888
Q ss_pred EcCCCcCc
Q 005542 427 DLSYNQFT 434 (691)
Q Consensus 427 ~ls~n~l~ 434 (691)
.+-+|..+
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 88888765
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=7.1e-05 Score=83.79 Aligned_cols=137 Identities=21% Similarity=0.174 Sum_probs=85.9
Q ss_pred CCCcEEECcCCcccccCCCCCCCCccccCCccccC-CCCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeee
Q 005542 43 GQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTK 121 (691)
Q Consensus 43 ~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~-l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~ 121 (691)
.+|++||+++...- ....|..++. +|.|+.|.+++-.+...--.....++++|..||+|+.+++..
T Consensus 122 ~nL~~LdI~G~~~~-----------s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-----------SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-- 188 (699)
T ss_pred HhhhhcCccccchh-----------hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--
Confidence 47888888875432 1234455554 788888888876654221113456778888888888874333
Q ss_pred ccCCCCCCCccEEEccCCCCCCch--hhhhCCCCCCEEEccCCcCCccCChhHh-----hcCcCcccEEECCCCcCCccC
Q 005542 122 LTVNSSFPNLWALGLSACNISEFP--DILKTQHQLDWLDLSENQIRGRIPSWMW-----DIGVHTLFRLDLSRNFLTSID 194 (691)
Q Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-----~~~~~~L~~L~ls~n~l~~~~ 194 (691)
.....+++|+.|.+.+=.+..-. ..+.++++|++||+|....... +.-+. ...+|+|+.||.|++.+....
T Consensus 189 -~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred -HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 22335788888888776666322 3567788888888888665422 21111 123488888888877766543
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=0.00015 Score=68.72 Aligned_cols=88 Identities=33% Similarity=0.369 Sum_probs=47.3
Q ss_pred cCCCCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeeccCCC-CCCCccEEEccCCCCCCch--hhhhCCC
Q 005542 76 FELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNISEFP--DILKTQH 152 (691)
Q Consensus 76 ~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp--~~l~~l~ 152 (691)
-.+..|+.|++.+..++ ++. .|-.|++|++|.+|.|.....+.+.... .+++|++|++++|++..+. .-+..+.
T Consensus 40 d~~~~le~ls~~n~glt-t~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLT-TLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhcccee-ecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 34445555555555554 222 4555666666666666322333333322 3566666666666665321 2345566
Q ss_pred CCCEEEccCCcCCc
Q 005542 153 QLDWLDLSENQIRG 166 (691)
Q Consensus 153 ~L~~L~Ls~n~l~~ 166 (691)
+|..|++..|..+.
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 66677777666553
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.18 E-value=1.3e-05 Score=80.31 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=52.3
Q ss_pred CCCCCcEEEccCccccccc-cchh--hccCCCeEEccCCccc--ccCCccccCCCCccEEEccCCcccCCC-----Cccc
Q 005542 298 NSTSLSFLDVGNNSLSGPI-PEYL--GNSTLEVLDMRMNKFS--GSLPQTFGKSCVLVSLKLNGNRLEGPL-----PPSL 367 (691)
Q Consensus 298 ~l~~L~~L~L~~n~l~~~~-~~~~--~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l 367 (691)
+..+|+.+-++.++--+.. -..+ ....|+.+++..+... +.+...-.+++.|+.+.+++|...... ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 3455666666555421110 0011 1125555555554321 112222234566666666666443111 1223
Q ss_pred cCCCCccEEEccCCCC-CcCcchhhcCCCCccEEEcccCcCc
Q 005542 368 VNCRHLEVIDVGNNQI-NETFPHWLDVLPELQVLTLRSNRFC 408 (691)
Q Consensus 368 ~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~ 408 (691)
..+..|+.+.++++.. ++.....+..+++|+.+++-+++-.
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 4455667777777643 3333344555666666666666543
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.12 E-value=4.3e-05 Score=76.70 Aligned_cols=296 Identities=19% Similarity=0.112 Sum_probs=132.9
Q ss_pred CCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCccCccccChhhh-cCCCCCCEEEccCCC-ceeeee
Q 005542 44 QLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDF-AKLKNLKYLILSNIS-LSVSTK 121 (691)
Q Consensus 44 ~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n~~~~~i~~~~l-~~l~~L~~L~Ls~n~-l~~~~~ 121 (691)
.|+.|.|.++.=.+.- .+-....+++++++|++.++....+.....+ ..|++|++|+|..|. |+...-
T Consensus 139 ~lk~LSlrG~r~v~~s----------slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDS----------SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred ccccccccccccCCcc----------hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 5777777766432211 1112334577777777777753222221222 457778888877753 111111
Q ss_pred ccCCCCCCCccEEEccCCCCC---CchhhhhCCCCCCEEEccCCcCCccCChhHhhc--CcCcccEEECCCCc-CCccCC
Q 005542 122 LTVNSSFPNLWALGLSACNIS---EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDI--GVHTLFRLDLSRNF-LTSIDH 195 (691)
Q Consensus 122 ~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~--~~~~L~~L~ls~n~-l~~~~~ 195 (691)
.....++++|++|+++.|.-- .+......++.++.+.+++|.=. --..+... ....+..+++..|. ++....
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHH
Confidence 112235777888887777432 23334455555666655554211 11111111 11223344443432 222111
Q ss_pred ----CCCCCcCEEeccCccCcccCCCCCCcccccCCCCccEEEccCCC-CCCCCCccc-cCCCCCCEEEeeCCcCCC--C
Q 005542 196 ----LPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNH-LEGPLPPSL-SNCVNLQVLDVGNNNLSG--P 267 (691)
Q Consensus 196 ----~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~--~ 267 (691)
..+..|+.|+.+++...+. ..-..--..+.+|+.|.++.++ ++..-...+ .+++.|+.+++..+.... .
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d---~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITD---EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCch---HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh
Confidence 2345566666655543211 1100011114566666666654 221111111 235566666666654321 1
Q ss_pred cCcccCCCCCCCEEEccCCcccccC-----cccccCCCCCcEEEccCcccccc-ccchh-hccCCCeEEccCCccc-c-c
Q 005542 268 IPECLGNSTRLSFLDVRNNNLSGPI-----PECLGNSTSLSFLDVGNNSLSGP-IPEYL-GNSTLEVLDMRMNKFS-G-S 338 (691)
Q Consensus 268 ~~~~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~-~~~~~-~~~~L~~L~L~~n~l~-~-~ 338 (691)
+...-.+++.|++|.++++...... ...-..+..|..+.++++..... ..+.. ...+|+.+++-.++-. . .
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 1122234566777777665432111 11123455677777777765421 11111 2226777777666422 1 1
Q ss_pred CCccccCCCCccEEEc
Q 005542 339 LPQTFGKSCVLVSLKL 354 (691)
Q Consensus 339 ~~~~~~~l~~L~~L~L 354 (691)
+...-..+|+++...+
T Consensus 444 i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 444 ISRFATHLPNIKVHAY 459 (483)
T ss_pred hHHHHhhCccceehhh
Confidence 2222334555555433
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00042 Score=65.85 Aligned_cols=112 Identities=26% Similarity=0.258 Sum_probs=66.4
Q ss_pred ccCCcccCCCCCCCCcEEECcCCcccccCCCCCCCCccccCCccccCCCCCCEEEccCc--cCccccChhhhcCCCCCCE
Q 005542 31 NIPAVTSEGIYPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFN--NFSGSVELYDFAKLKNLKY 108 (691)
Q Consensus 31 ~~~~~~~~~~~~~~L~~LdLs~n~l~~~~~~~~~n~~~g~lp~~l~~l~~L~~L~Ls~n--~~~~~i~~~~l~~l~~L~~ 108 (691)
.+..+..++ ..|+.|++.+..++.. ..+-.+++|++|.+|.| .+.+.++ .-..++++|++
T Consensus 34 ~~~gl~d~~---~~le~ls~~n~gltt~--------------~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~ 95 (260)
T KOG2739|consen 34 KLGGLTDEF---VELELLSVINVGLTTL--------------TNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKV 95 (260)
T ss_pred Ccccccccc---cchhhhhhhccceeec--------------ccCCCcchhhhhcccCCcccccccce-ehhhhCCceeE
Confidence 355555543 3555555555555411 23445677777777777 5544444 23445577778
Q ss_pred EEccCCCceeeeeccCCCCCCCccEEEccCCCCCCch----hhhhCCCCCCEEEcc
Q 005542 109 LILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFP----DILKTQHQLDWLDLS 160 (691)
Q Consensus 109 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp----~~l~~l~~L~~L~Ls 160 (691)
|++++|.|.....+.....+.+|..|++.+|..+.+- ..|.-+++|++||-.
T Consensus 96 l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 96 LNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred EeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 8887777665555555556777777777777666431 234556666666543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.82 E-value=0.0033 Score=54.97 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=31.0
Q ss_pred CCCccEEEccCCCCCCCCCccccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEE
Q 005542 227 GCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLD 306 (691)
Q Consensus 227 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 306 (691)
+.+|+.+.+.. .+...-...|..+++|+.+.+..+ +......+|..+.+++.+.+.+ .+.......|..+++|+.++
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 44555555543 233333344555555666655543 4433334455555555555543 22222233444455555555
Q ss_pred ccC
Q 005542 307 VGN 309 (691)
Q Consensus 307 L~~ 309 (691)
+..
T Consensus 88 ~~~ 90 (129)
T PF13306_consen 88 IPS 90 (129)
T ss_dssp ETT
T ss_pred cCc
Confidence 543
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.73 E-value=0.0047 Score=54.01 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=21.5
Q ss_pred cccCCCCCCEEEeeCCcCCCCcCcccCCCCCCCEEEccCCcccccCcccccCCCCCcEEEc
Q 005542 247 SLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDV 307 (691)
Q Consensus 247 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 307 (691)
.|.++++|+.+.+.. .+......+|..+++|+.+.+..+ +.......|..+++++.+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 344555555555543 333333444444545555555443 33233334444444444444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=9.4e-05 Score=70.31 Aligned_cols=60 Identities=27% Similarity=0.311 Sum_probs=29.1
Q ss_pred CCCCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeeccCCCCCCCccEEEccCC
Q 005542 77 ELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSAC 139 (691)
Q Consensus 77 ~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 139 (691)
+++.|++|.||-|+|+ .+. .+..|++|+.|+|..|.|.....+....++++|+.|.|..|
T Consensus 39 kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 4555666666666655 332 35555555555555555433333333333444444444333
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.00069 Score=64.60 Aligned_cols=88 Identities=24% Similarity=0.130 Sum_probs=69.5
Q ss_pred CCCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeeccCCCCCCCccEEEccCCCCCCch--hhhhCCCCCC
Q 005542 78 LVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFP--DILKTQHQLD 155 (691)
Q Consensus 78 l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~ 155 (691)
+.+.+.|++-+|.+. .|. ...+++.|++|.||-|.|+ .+.....|++|++|+|..|.|..+. ..+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 557788899999987 555 5678999999999999843 3333446899999999999998774 4678999999
Q ss_pred EEEccCCcCCccCChh
Q 005542 156 WLDLSENQIRGRIPSW 171 (691)
Q Consensus 156 ~L~Ls~n~l~~~~p~~ 171 (691)
.|.|..|.-.+.-+..
T Consensus 92 ~LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQN 107 (388)
T ss_pred hHhhccCCcccccchh
Confidence 9999998877665543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.49 E-value=0.0051 Score=34.83 Aligned_cols=11 Identities=55% Similarity=0.703 Sum_probs=4.5
Q ss_pred cceeccccccc
Q 005542 515 KSLNISHNNLT 525 (691)
Q Consensus 515 ~~L~Ls~N~l~ 525 (691)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444444
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.18 E-value=0.0065 Score=34.39 Aligned_cols=19 Identities=53% Similarity=0.814 Sum_probs=9.4
Q ss_pred CCEEeCCCCcCCCcCccccc
Q 005542 538 LESLDLSSNKLAGRIPTQLA 557 (691)
Q Consensus 538 L~~L~Ls~N~l~~~~p~~l~ 557 (691)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.17 E-value=0.0095 Score=65.40 Aligned_cols=128 Identities=24% Similarity=0.147 Sum_probs=75.6
Q ss_pred CCCCCCEEEccCccCccc--cChhhhcCCCCCCEEEccCC-C-ceeee--eccCCCCCCCccEEEccCCC-CCCc--hhh
Q 005542 77 ELVNLTFVSLSFNNFSGS--VELYDFAKLKNLKYLILSNI-S-LSVST--KLTVNSSFPNLWALGLSACN-ISEF--PDI 147 (691)
Q Consensus 77 ~l~~L~~L~Ls~n~~~~~--i~~~~l~~l~~L~~L~Ls~n-~-l~~~~--~~~~~~~l~~L~~L~L~~n~-l~~l--p~~ 147 (691)
.++.|+.|.+..+.-... +. .....+++|+.|+++++ . +...+ .......+++|+.|+++.+. +++. ...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLD-ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHH-HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 367888888887743322 22 45677889999998873 1 11111 11122247888999998888 6633 222
Q ss_pred hhCCCCCCEEEccCCc-CCccCChhHhhcCcCcccEEECCCCcCCccC-----CCCCCCcCEEec
Q 005542 148 LKTQHQLDWLDLSENQ-IRGRIPSWMWDIGVHTLFRLDLSRNFLTSID-----HLPWKNLEFLTL 206 (691)
Q Consensus 148 l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~-----~~~~~~L~~L~L 206 (691)
...+++|++|.+.++. +++..-..+.. .++.|++|+++.+...... ...+++++.|.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~-~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAE-RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHH-hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 3347889999877776 45333233322 2377999999877654221 123555555543
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.97 E-value=0.0071 Score=66.41 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=8.4
Q ss_pred ccCCCCccEEEccCCC
Q 005542 367 LVNCRHLEVIDVGNNQ 382 (691)
Q Consensus 367 l~~l~~L~~L~L~~n~ 382 (691)
+..+++++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3445555555555554
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.93 E-value=0.076 Score=27.79 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=5.5
Q ss_pred CccEEEccCCCCCCc
Q 005542 130 NLWALGLSACNISEF 144 (691)
Q Consensus 130 ~L~~L~L~~n~l~~l 144 (691)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.72 E-value=0.0057 Score=56.98 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=72.6
Q ss_pred cccccEEEccCCcccccCChhhhccCCCcceeccccccccCccccccCCCCCCEEeCCCCcCCCcCcccccCCCCCCEEE
Q 005542 487 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 566 (691)
Q Consensus 487 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 566 (691)
....+.||++.|++... ...|+-++.|..|+++.|.+. ..|..++.+..+..+++..|..+ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 56778999999998643 345777889999999999998 88999999999999999999888 6888999999999999
Q ss_pred ccCCeee
Q 005542 567 LSNNQLE 573 (691)
Q Consensus 567 ls~N~l~ 573 (691)
+..|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999875
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.42 E-value=0.0011 Score=71.03 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=19.2
Q ss_pred CCCcEEEccCccccccccchhh-----ccCCCeEEccCCccc
Q 005542 300 TSLSFLDVGNNSLSGPIPEYLG-----NSTLEVLDMRMNKFS 336 (691)
Q Consensus 300 ~~L~~L~L~~n~l~~~~~~~~~-----~~~L~~L~L~~n~l~ 336 (691)
..++.++++.|.+......... ...++++.++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4556666666666543332221 115666666666654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.05 E-value=0.1 Score=27.30 Aligned_cols=12 Identities=42% Similarity=0.470 Sum_probs=4.2
Q ss_pred CCCEEEccCccC
Q 005542 80 NLTFVSLSFNNF 91 (691)
Q Consensus 80 ~L~~L~Ls~n~~ 91 (691)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.25 E-value=0.00078 Score=72.25 Aligned_cols=38 Identities=34% Similarity=0.287 Sum_probs=18.5
Q ss_pred CCEEEccCCcCCccCChhHhhc--CcCcccEEECCCCcCC
Q 005542 154 LDWLDLSENQIRGRIPSWMWDI--GVHTLFRLDLSRNFLT 191 (691)
Q Consensus 154 L~~L~Ls~n~l~~~~p~~~~~~--~~~~L~~L~ls~n~l~ 191 (691)
+..|.|.+|.+.......+... ...+|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 6667777777665433333221 1144444444444444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.97 E-value=0.29 Score=28.82 Aligned_cols=21 Identities=38% Similarity=0.317 Sum_probs=13.0
Q ss_pred CCCCEEEccCccCccccChhhh
Q 005542 79 VNLTFVSLSFNNFSGSVELYDF 100 (691)
Q Consensus 79 ~~L~~L~Ls~n~~~~~i~~~~l 100 (691)
++|++|+|++|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 46677777777766 5664444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.97 E-value=0.29 Score=28.82 Aligned_cols=21 Identities=38% Similarity=0.317 Sum_probs=13.0
Q ss_pred CCCCEEEccCccCccccChhhh
Q 005542 79 VNLTFVSLSFNNFSGSVELYDF 100 (691)
Q Consensus 79 ~~L~~L~Ls~n~~~~~i~~~~l 100 (691)
++|++|+|++|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 46677777777766 5664444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.03 E-value=0.35 Score=28.44 Aligned_cols=16 Identities=44% Similarity=0.625 Sum_probs=9.5
Q ss_pred CCCCEEeCCCCcCCCc
Q 005542 536 TELESLDLSSNKLAGR 551 (691)
Q Consensus 536 ~~L~~L~Ls~N~l~~~ 551 (691)
++|+.|+|++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666633
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.03 E-value=0.35 Score=28.44 Aligned_cols=16 Identities=44% Similarity=0.625 Sum_probs=9.5
Q ss_pred CCCCEEeCCCCcCCCc
Q 005542 536 TELESLDLSSNKLAGR 551 (691)
Q Consensus 536 ~~L~~L~Ls~N~l~~~ 551 (691)
++|+.|+|++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666633
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=0.15 Score=46.94 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=52.8
Q ss_pred CCCeEEccCCcccccCCccccCCCCccEEEccCCcccCCCC-ccc-cCCCCccEEEccCC-CCCcCcchhhcCCCCccEE
Q 005542 324 TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLP-PSL-VNCRHLEVIDVGNN-QINETFPHWLDVLPELQVL 400 (691)
Q Consensus 324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 400 (691)
.++.+|-++..|..+.-+.+..++.++.|.+.+|.--+..- +.+ ...++|+.|++++| +|++..-.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 56777777777766666667777777777777765332100 001 13567888888876 6777666777777777777
Q ss_pred Eccc
Q 005542 401 TLRS 404 (691)
Q Consensus 401 ~L~~ 404 (691)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7755
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.68 E-value=0.027 Score=52.63 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=51.5
Q ss_pred cccCCCCCCEEEccCccCccccChhhhcCCCCCCEEEccCCCceeeeeccCCC-CCCCccEEEccCCCCCCchhhhhCCC
Q 005542 74 SIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNISEFPDILKTQH 152 (691)
Q Consensus 74 ~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~l~~l~ 152 (691)
.+......+.||++.|++. .+. ..|+.++.|..|+++.|.+.+ .|... ....++++++..|..+..|.+++..+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~-~n~s~~t~~~rl~~sknq~~~---~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLG-KNFSILTRLVRLDLSKNQIKF---LPKDAKQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhc-cchHHHHHHHHHhccHhhHhh---ChhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence 3445556667777777665 333 356666666677776665322 22222 24556666666666666666666667
Q ss_pred CCCEEEccCCcCC
Q 005542 153 QLDWLDLSENQIR 165 (691)
Q Consensus 153 ~L~~L~Ls~n~l~ 165 (691)
+++++++..+.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 7777766666643
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.17 E-value=0.51 Score=27.13 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=6.8
Q ss_pred cccEEEccCCccccc
Q 005542 489 TFATIDLSSNRFQGE 503 (691)
Q Consensus 489 ~L~~L~Ls~n~l~~~ 503 (691)
+|+.|+|++|.+++.
T Consensus 3 ~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 3 NLETLDLSNNQITDE 17 (24)
T ss_dssp T-SEEE-TSSBEHHH
T ss_pred CCCEEEccCCcCCHH
Confidence 455555555555443
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.01 E-value=11 Score=39.69 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=14.4
Q ss_pred CCCcEEECcCCcccccCCC
Q 005542 43 GQLRHLDLGNNHFVGKIPA 61 (691)
Q Consensus 43 ~~L~~LdLs~n~l~~~~~~ 61 (691)
+.++++|++.|.+...+|.
T Consensus 165 pr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred chhhhhccCCCcccccCCc
Confidence 4678999999988766554
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.16 E-value=1.2 Score=41.10 Aligned_cols=79 Identities=19% Similarity=0.112 Sum_probs=33.3
Q ss_pred ccEEEccCCCCCcCcchhhcCCCCccEEEcccCcCcCcCCCCCCCCCCCCccEEEcCCCcCccCCChHhhhcccccccc
Q 005542 373 LEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRR 451 (691)
Q Consensus 373 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~ 451 (691)
++.+|-++..|..+.-..+..++.++.|.+.+|.-.+.-.-.......++|+.|++++|.-...-...++..+++|..+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4455555554444444444455555555555443221111111112345666666665543222222334444444333
No 87
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=72.11 E-value=2.6 Score=27.63 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=7.5
Q ss_pred eehhhhhhhhhhhhhhhHH
Q 005542 633 LAMLGYASGVVIGLSIGYM 651 (691)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~ 651 (691)
.+++++.+++++.++.+++
T Consensus 14 a~~VvVPV~vI~~vl~~~l 32 (40)
T PF08693_consen 14 AVGVVVPVGVIIIVLGAFL 32 (40)
T ss_pred EEEEEechHHHHHHHHHHh
Confidence 3344444444443333333
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.02 E-value=3.8 Score=24.19 Aligned_cols=15 Identities=67% Similarity=0.882 Sum_probs=10.3
Q ss_pred CCCCCEEeCCCCcCC
Q 005542 535 LTELESLDLSSNKLA 549 (691)
Q Consensus 535 l~~L~~L~Ls~N~l~ 549 (691)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.85 E-value=21 Score=37.67 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=11.5
Q ss_pred CccEEEcCCCcCccCCC
Q 005542 422 KLRIIDLSYNQFTGVLP 438 (691)
Q Consensus 422 ~L~~L~ls~n~l~~~~p 438 (691)
.+++|++.+|.+.|..-
T Consensus 355 R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGG 371 (553)
T ss_pred eeeEeeccccccccccc
Confidence 47777777777766543
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.54 E-value=5 Score=23.63 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=6.3
Q ss_pred CCcEEECcCCccc
Q 005542 44 QLRHLDLGNNHFV 56 (691)
Q Consensus 44 ~L~~LdLs~n~l~ 56 (691)
+|++|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4445555555444
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.47 E-value=5.3 Score=23.97 Aligned_cols=13 Identities=54% Similarity=0.751 Sum_probs=6.8
Q ss_pred CCcEEECcCCccc
Q 005542 44 QLRHLDLGNNHFV 56 (691)
Q Consensus 44 ~L~~LdLs~n~l~ 56 (691)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.11 E-value=5.7 Score=42.60 Aligned_cols=36 Identities=39% Similarity=0.311 Sum_probs=18.0
Q ss_pred CcccEEECCCC--cCCccCC---CCCCCcCEEeccCccCcc
Q 005542 178 HTLFRLDLSRN--FLTSIDH---LPWKNLEFLTLDSNLLQG 213 (691)
Q Consensus 178 ~~L~~L~ls~n--~l~~~~~---~~~~~L~~L~L~~n~l~~ 213 (691)
++|+.|+|++| .+..... .....|++|-+.+|.+..
T Consensus 244 pklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 244 PKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred chhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 55555555555 2222111 223456667777776653
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.45 E-value=5.6 Score=42.66 Aligned_cols=63 Identities=30% Similarity=0.199 Sum_probs=26.4
Q ss_pred CCCCCEEEccCCCceeeeeccCCC-CCCCccEEEccCC--CCCCchhhhhC--CCCCCEEEccCCcCCc
Q 005542 103 LKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSAC--NISEFPDILKT--QHQLDWLDLSENQIRG 166 (691)
Q Consensus 103 l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n--~l~~lp~~l~~--l~~L~~L~Ls~n~l~~ 166 (691)
.+.+..++|++|++.....+.... ..++|..|+|++| .+...+ .+.+ ...|+.|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcccc
Confidence 334444445555433332222221 2455555555555 222111 1211 2335566666666553
No 94
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=54.86 E-value=5.8 Score=41.94 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=20.1
Q ss_pred ceeehhhhhhhhhhhhhhhHHhhhc
Q 005542 631 WKLAMLGYASGVVIGLSIGYMAFVT 655 (691)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (691)
..++.|+|++.+|||.+|+|+.|||
T Consensus 367 gaIaGIsvavvvvVgglvGfLcWwf 391 (397)
T PF03302_consen 367 GAIAGISVAVVVVVGGLVGFLCWWF 391 (397)
T ss_pred cceeeeeehhHHHHHHHHHHHhhhe
Confidence 3466778888889999999999764
No 95
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=52.94 E-value=5.6 Score=32.35 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=9.8
Q ss_pred ehhhhhhhhhhhhhhhHHhh
Q 005542 634 AMLGYASGVVIGLSIGYMAF 653 (691)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~ 653 (691)
+++++++.+++++++++++|
T Consensus 69 agi~vg~~~~v~~lv~~l~w 88 (96)
T PTZ00382 69 AGISVAVVAVVGGLVGFLCW 88 (96)
T ss_pred EEEEeehhhHHHHHHHHHhh
Confidence 34444444445555555554
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=50.27 E-value=9.9 Score=49.03 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=20.2
Q ss_pred eccccccccCccccccCCCCCCEEeCCCCcCC
Q 005542 518 NISHNNLTGGIPSSLRNLTELESLDLSSNKLA 549 (691)
Q Consensus 518 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 549 (691)
||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46666666555556666666666666666554
No 97
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.55 E-value=25 Score=29.79 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=11.9
Q ss_pred hhhhhhhhhhhhhhHHhhhc
Q 005542 636 LGYASGVVIGLSIGYMAFVT 655 (691)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~ 655 (691)
+..++|+|+|+++|+++.+.
T Consensus 9 ~~a~igLvvGi~IG~li~Rl 28 (138)
T COG3105 9 EYALIGLVVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445666667777666543
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.93 E-value=20 Score=30.60 Aligned_cols=7 Identities=43% Similarity=0.781 Sum_probs=2.6
Q ss_pred hhhhhhh
Q 005542 640 SGVVIGL 646 (691)
Q Consensus 640 ~~~~~~~ 646 (691)
+|+++|+
T Consensus 71 ~gv~aGv 77 (122)
T PF01102_consen 71 FGVMAGV 77 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 99
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=31.30 E-value=32 Score=19.96 Aligned_cols=12 Identities=33% Similarity=0.110 Sum_probs=7.2
Q ss_pred CCCCEEEccCcc
Q 005542 79 VNLTFVSLSFNN 90 (691)
Q Consensus 79 ~~L~~L~Ls~n~ 90 (691)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666664
No 100
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.57 E-value=20 Score=30.30 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=21.8
Q ss_pred ccceeehhhhhhhhhhhhhhhHHhhhc
Q 005542 629 FDWKLAMLGYASGVVIGLSIGYMAFVT 655 (691)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (691)
..|.++++|+++|+++|.+++=+--..
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 358899999999999999888665443
No 101
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=29.55 E-value=20 Score=31.60 Aligned_cols=9 Identities=11% Similarity=0.039 Sum_probs=3.4
Q ss_pred eehhhhhhh
Q 005542 633 LAMLGYASG 641 (691)
Q Consensus 633 ~~~~~~~~~ 641 (691)
+++++||+|
T Consensus 51 VIGvVVGVG 59 (154)
T PF04478_consen 51 VIGVVVGVG 59 (154)
T ss_pred EEEEEeccc
Confidence 333333333
No 102
>PRK11677 hypothetical protein; Provisional
Probab=29.29 E-value=21 Score=31.05 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=8.1
Q ss_pred hhhhhhhhhhHHhhh
Q 005542 640 SGVVIGLSIGYMAFV 654 (691)
Q Consensus 640 ~~~~~~~~~~~~~~~ 654 (691)
+++++|+++|+++.+
T Consensus 8 i~livG~iiG~~~~R 22 (134)
T PRK11677 8 IGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455555555555543
No 103
>PRK11677 hypothetical protein; Provisional
Probab=25.03 E-value=46 Score=28.92 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=19.8
Q ss_pred ceeehhhhhhhhhhhhhhhHHhhh
Q 005542 631 WKLAMLGYASGVVIGLSIGYMAFV 654 (691)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~ 654 (691)
|.++++++++|+++|++++-+.-.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 777888999999999988877553
No 104
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.49 E-value=39 Score=29.21 Aligned_cols=13 Identities=46% Similarity=0.927 Sum_probs=5.8
Q ss_pred hhhhhhhhhHHhh
Q 005542 641 GVVIGLSIGYMAF 653 (691)
Q Consensus 641 ~~~~~~~~~~~~~ 653 (691)
||++|+++|+++.
T Consensus 5 ~lvvG~iiG~~~~ 17 (128)
T PF06295_consen 5 GLVVGLIIGFLIG 17 (128)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 105
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.37 E-value=50 Score=28.58 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=17.5
Q ss_pred eehhhhhhhhhhhhhhhHHhhh
Q 005542 633 LAMLGYASGVVIGLSIGYMAFV 654 (691)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~ 654 (691)
++++++++|+++|++++.+...
T Consensus 1 y~~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHhcc
Confidence 4678888999999988887754
No 106
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=20.81 E-value=88 Score=23.41 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=6.8
Q ss_pred ehhhhhhhhhhhhhh
Q 005542 634 AMLGYASGVVIGLSI 648 (691)
Q Consensus 634 ~~~~~~~~~~~~~~~ 648 (691)
.+||+..|++++++-
T Consensus 34 ~aIGvi~gi~~~~lt 48 (68)
T PF04971_consen 34 AAIGVIGGIFFGLLT 48 (68)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344554455444433
No 107
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.77 E-value=54 Score=24.28 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=7.9
Q ss_pred hhhhhhhhhhHHhh
Q 005542 640 SGVVIGLSIGYMAF 653 (691)
Q Consensus 640 ~~~~~~~~~~~~~~ 653 (691)
+++++|+++++++.
T Consensus 5 lali~G~~~Gff~a 18 (64)
T PF03672_consen 5 LALIVGAVIGFFIA 18 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555666666553
Done!