Query 005542
Match_columns 691
No_of_seqs 449 out of 5029
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 17:54:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005542.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2051-2054//hhsearch_pdb/005542hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 528.9 42.8 595 2-610 31-753 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 451.7 36.4 532 32-579 37-699 (768)
3 3j0a_A TOLL-like receptor 5; m 1.0 1 1 433.3 46.0 545 18-613 2-596 (844)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 409.2 45.9 533 24-577 8-626 (680)
5 3t6q_A CD180 antigen; protein- 1.0 1 1 407.1 42.0 514 22-579 14-566 (606)
6 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 394.3 35.0 505 21-579 12-564 (606)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 392.5 41.3 549 45-601 6-627 (680)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 388.0 36.8 510 44-600 13-564 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 386.3 38.5 516 21-603 24-594 (844)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 384.6 34.1 504 44-602 12-564 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=528.88 Aligned_cols=595 Identities=31% Similarity=0.432 Sum_probs=389.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEE-----C---CCCCC--------------------CCCCCCCCCCEEECCCC
Q ss_conf 64233101148999887675003645661-----5---58766--------------------68999997749987689
Q 005542 2 ETKTAYIDVCDDTSNSQPAKSFEVKAITA-----N---IPAVT--------------------SEGIYPGQLRHLDLGNN 53 (691)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~--------------------~~~~~~~~L~~L~Ls~n 53 (691)
..|....++|.|.+++|....++...+.+ . ++... ..-..+++|++|||++|
T Consensus 31 ~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n 110 (768)
T 3rgz_A 31 PDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110 (768)
T ss_dssp TTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSS
T ss_pred CCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCC
T ss_conf 68789998768841387899278987789986775576696573168022467868886787033245788998989898
Q ss_pred CCCCCCCC--C------------CCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCHHH---HCCCCCCCEEECCCCC
Q ss_conf 66102899--9------------9997644688011-289999899866764732008121---0699989879711787
Q 005542 54 HFVGKIPA--S------------LDNQLIGSIPSSI-FELVNLTFVSLSFNNFSGSVELYD---FAKLKNLKYLILSNIS 115 (691)
Q Consensus 54 ~l~~~~~~--~------------~~n~~~~~ip~~~-~~l~~L~~L~Ls~n~i~~~i~~~~---l~~l~~L~~L~Ls~n~ 115 (691)
.+.+.+|. . ..|.+.+.+|..+ .++++|++|++++|.+++..+ .. +.++++|++|++++|.
T Consensus 111 ~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~ 189 (768)
T 3rgz_A 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV-VGWVLSDGCGELKHLAISGNK 189 (768)
T ss_dssp EEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETH-HHHHHTTCCTTCCEEECCSSE
T ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC-HHHHHHCCCCCCCEEECCCCC
T ss_conf 5787078967872788999898968826774797785638899989897983588587-155664358988989897880
Q ss_pred CEEEEECCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCC
Q ss_conf 30134056988899866898227889983065409999899985389697558946763075951699878876886699
Q 005542 116 LSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH 195 (691)
Q Consensus 116 l~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ls~n~l~~~~~ 195 (691)
..+..+. ..+++|++|++++|.+......+..+++|++|++++|.+++.+|..+..+ ++|++|++++|.+.+..+
T Consensus 190 --l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~ 264 (768)
T 3rgz_A 190 --ISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTC--TELKLLNISSNQFVGPIP 264 (768)
T ss_dssp --EESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTC--SSCCEEECCSSCCEESCC
T ss_pred --CCCCCCC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCC--CCCCEEECCCCCCCCCCC
T ss_conf --3465784-54786898989288278877111269999989794885878165777448--888989898886657167
Q ss_pred -CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC-CC
Q ss_conf -9999837895417527656999997433368987249986489898999702539999978991188387776945-67
Q 005542 196 -LPWKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPEC-LG 273 (691)
Q Consensus 196 -~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~ 273 (691)
..+++|++|++++|.+.+.+|..+... +++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +.
T Consensus 265 ~~~l~~L~~L~L~~n~l~~~ip~~~~~~----~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 265 PLPLKSLQYLSLAENKFTGEIPDFLSGA----CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp CCCCTTCCEEECCSSEEEESCCCCSCTT----CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred CCCCCCCCEEECCCCCCCCCCCHHHHHH----CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 2436878989791785577258888844----686889989689677842367755877667789788525737978872
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCC--------------------------CCCCCCHHHC-CCC
Q ss_conf 999998898538846566862354999-996998558513--------------------------3455300001-588
Q 005542 274 NSTRLSFLDVRNNNLSGPIPECLGNST-SLSFLDVGNNSL--------------------------SGPIPEYLGN-STL 325 (691)
Q Consensus 274 ~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l--------------------------~~~~~~~~~~-~~L 325 (691)
.+++|++|++++|.+.+..|..+..++ +|+.|++++|.+ .+..|..+.. .+|
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 48888788484784376230989863227719986278747876766653324776189897784654248777568987
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCC
Q ss_conf 76984278433348723237887359986698255879935639897429994489887674322129999639990167
Q 005542 326 EVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 405 (691)
Q Consensus 326 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 405 (691)
+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCC
T ss_conf 98989588466854677744998898989788154718978828777329990199513758878816998998975399
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-CCCCCCC----------CC-CEEEE
Q ss_conf 376768998987799986399867875856789676620122321358863100-0123566----------53-10158
Q 005542 406 RFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVN-YMRSLNY----------SY-YESIS 473 (691)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~l~~~~~~~~-~l~~l~~----------~~-~~~~~ 473 (691)
++.+.++..+ ..+++|+.|++++|.+++.+|.. +..++.++.++...+.+. .+..... .. .....
T Consensus 501 ~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 501 RLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred CCCCCCCHHH--HCCCCCCEEECCCCCCCCCCCHH-HCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCC
T ss_conf 5189687688--56899998989789433748877-70889899898988846882795786042122320134542111
Q ss_pred ----------------------------------------EEECCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCC
Q ss_conf ----------------------------------------8731770234320265138995377154227754441477
Q 005542 474 ----------------------------------------LTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNS 513 (691)
Q Consensus 474 ----------------------------------------~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 513 (691)
....+........+++|+.|||++|.+++.+|..++.+++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 13444322223322210013556323200232110011331004627433403356657978588015558778841415
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 76210225214457660022899999886999858875850232899999997517820004999999886477644788
Q 005542 514 LKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGIDSYSGN 593 (691)
Q Consensus 514 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~n 593 (691)
|+.|+|++|.+++.+|+.++++++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|...++.++...+|.||
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN 737 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSC
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCC
T ss_conf 78784868803887896784777899898978802386886775788789787968815560899601024897775698
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 89989999898899999
Q 005542 594 VGLCGFPLSKICRIDEA 610 (691)
Q Consensus 594 ~~lcg~~~~~~c~~~~~ 610 (691)
+.+||.|+. .|.....
T Consensus 738 ~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 738 PGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp TEEESTTSC-CCCSCC-
T ss_pred CHHCCCCCC-CCCCCCC
T ss_conf 321088776-7888766
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=451.68 Aligned_cols=532 Identities=29% Similarity=0.371 Sum_probs=344.5
Q ss_pred CCCCCCCCCCC--CCCCEEECCCCCCCCC---CCCC---------CCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 58766689999--9774998768966102---8999---------99976446--8801128999989986676473200
Q 005542 32 IPAVTSEGIYP--GQLRHLDLGNNHFVGK---IPAS---------LDNQLIGS--IPSSIFELVNLTFVSLSFNNFSGSV 95 (691)
Q Consensus 32 ~~~~~~~~~~~--~~L~~L~Ls~n~l~~~---~~~~---------~~n~~~~~--ip~~~~~l~~L~~L~Ls~n~i~~~i 95 (691)
-..+.|.|+.| .+++.|||+++.+.|. ++.. .++.+.+. +|..+..+++|++|+|++|.+.+.+
T Consensus 37 ~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (768)
T 3rgz_A 37 KNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV 116 (768)
T ss_dssp SCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEG
T ss_pred CCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 98768841387899278987789986775576696573168022467868886787033245788998989898578707
Q ss_pred CHH--HHCCCCCCCEEECCCCCCEEEEECCCC--CCCCCCCEEECCCCCCCCC-HHH---HHCCCCCCEEECCCCCCCCC
Q ss_conf 812--106999898797117873013405698--8899866898227889983-065---40999989998538969755
Q 005542 96 ELY--DFAKLKNLKYLILSNISLSVSTKLTVN--SSFPNLWALGLSACNISEF-PDI---LKTQHQLDWLDLSENQIRGR 167 (691)
Q Consensus 96 ~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~L~~~~l~~l-~~~---l~~l~~L~~L~L~~n~l~~~ 167 (691)
| . .+.++++|++|++++|. ..+..+.. ..+++|++|++++|.+... +.. +..+++|++|++++|.+.+.
T Consensus 117 ~-~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 193 (768)
T 3rgz_A 117 T-TLTSLGSCSGLKFLNVSSNT--LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193 (768)
T ss_dssp G-GGGGGGGCTTCCEEECCSSE--EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC
T ss_pred C-CHHHHHCCCCCCEEECCCCC--CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 8-96787278899989896882--67747977856388999898979835885871556643589889898978803465
Q ss_pred ----------------------CCHHHHHCCCCCCCEEECCCCCCCCCCC---CCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf ----------------------8946763075951699878876886699---999983789541752765699999743
Q 005542 168 ----------------------IPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPWKNLEFLTLDSNLLQGSLPNLPPHM 222 (691)
Q Consensus 168 ----------------------~~~~~~~l~~~~L~~L~ls~n~l~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~ 222 (691)
+|. +..+ ++|++|++++|.+.+..+ ..+++|++|++++|.+.+..+..
T Consensus 194 ~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---- 266 (768)
T 3rgz_A 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDC--SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---- 266 (768)
T ss_dssp CBCTTCTTCCEEECCSSCCCSCCCB-CTTC--CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC----
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCC-CCCC--CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC----
T ss_conf 7845478689898928827887711-1269--99998979488587816577744888898989888665716724----
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCC
Q ss_conf 33689872499864898989997025399-99978991188387776945679999988985388465668623-54999
Q 005542 223 TYAKGCNLTYLRLSGNHLEGPLPPSLSNC-VNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPEC-LGNST 300 (691)
Q Consensus 223 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~ 300 (691)
.+++|++|++++|.+++.+|..+... ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..++
T Consensus 267 ---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 267 ---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp ---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred ---CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCC
T ss_conf ---36878989791785577258888844686889989689677842367755877667789788525737978872488
Q ss_pred CCCEEECCCCCCCCCCCCHHHC-C-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9969985585133455300001-5-8876984278433348723237--8873599866982558799356398974299
Q 005542 301 SLSFLDVGNNSLSGPIPEYLGN-S-TLEVLDMRMNKFSGSLPQTFGK--SCVLVSLKLNGNRLEGPLPPSLVNCRHLEVI 376 (691)
Q Consensus 301 ~L~~L~l~~n~l~~~~~~~~~~-~-~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 376 (691)
+|+.|++++|.+.+..|..+.. . +|+.|++++|.+.+..+..+.. +++|+.|++++|.+++.+|..+..+++|+.|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEE
T ss_conf 88788484784376230989863227719986278747876766653324776189897784654248777568987989
Q ss_pred ECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 94489887674322129999639990167376768998987799986399867875856789676620122321358863
Q 005542 377 DVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSI 456 (691)
Q Consensus 377 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~l~~~~~ 456 (691)
++++|.+++..+..+..+++|+.|++++|.+.+.++..+ ..+++|+.|++++|.+++.+|.. +.+++.++.++...+
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNN 500 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH--CCCCCCEEEEECCCCCCCCCCHH-HHCCCCCCEEECCCC
T ss_conf 895884668546777449988989897881547189788--28777329990199513758878-816998998975399
Q ss_pred CCCCC-CCC--CCCCCEEEEEEECCC---CHHHHHHCCCCCEEECCCCCCCCCCCHHH----------------------
Q ss_conf 10001-235--665310158873177---02343202651389953771542277544----------------------
Q 005542 457 EVNYM-RSL--NYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVL---------------------- 508 (691)
Q Consensus 457 ~~~~l-~~l--~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l---------------------- 508 (691)
.+... ... .......+.+..+.. .......+++|+.|++++|.+.+.+|..+
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCC
T ss_conf 51896876885689999898978943374887770889899898988846882795786042122320134542111134
Q ss_pred ------------------------------------------------HCCCCCCCEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf ------------------------------------------------41477762102252144576600228999998
Q 005542 509 ------------------------------------------------GKLNSLKSLNISHNNLTGGIPSSLRNLTELES 540 (691)
Q Consensus 509 ------------------------------------------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 540 (691)
..+++|+.|+|++|.+++.+|..++++++|+.
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCE
T ss_conf 44322223322210013556323200232110011331004627433403356657978588015558778841415787
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCC
Q ss_conf 869998588758502328999999975178200049999
Q 005542 541 LDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG 579 (691)
Q Consensus 541 L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~ 579 (691)
|+|++|++++.+|..+..+++|+.||+++|+++|.+|..
T Consensus 661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 848688038878967847778998989788023868867
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=433.28 Aligned_cols=545 Identities=20% Similarity=0.192 Sum_probs=306.8
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH
Q ss_conf 76750036456615587666899999774998768966102899999976446880112899998998667647320081
Q 005542 18 QPAKSFEVKAITANIPAVTSEGIYPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVEL 97 (691)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~n~~~~~ip~~~~~l~~L~~L~Ls~n~i~~~i~~ 97 (691)
|.+....++|...++..++. .++++++|||++|.+.+..+ ..+.++++|++|++++|.+.+.++.
T Consensus 2 C~~~~~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~------------~~~~~l~~L~~LdLs~n~~~~~i~~ 66 (844)
T 3j0a_A 2 CSFDGRIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTA------------SSFPFLEQLQLLELGSQYTPLTIDK 66 (844)
T ss_dssp CBTTTEEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECS------------SSCSSCCSCSEEEECTTCCCCEECT
T ss_pred CEEECEEEECCCCCCCCCCC---CCCCCCEEECCCCCCCCCCH------------HHCCCCCCCEEEECCCCCCCCCCCH
T ss_conf 06866489823799777898---99986888887786783296------------6776621370886789977444197
Q ss_pred HHHCCCCCCCEEECCCCCCEEEEECCC-CCCCCCCCEEECCCCCCCC-CHHH--HHCCCCCCEEECCCCCCCCCCC-HHH
Q ss_conf 210699989879711787301340569-8889986689822788998-3065--4099998999853896975589-467
Q 005542 98 YDFAKLKNLKYLILSNISLSVSTKLTV-NSSFPNLWALGLSACNISE-FPDI--LKTQHQLDWLDLSENQIRGRIP-SWM 172 (691)
Q Consensus 98 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~~~l~~-l~~~--l~~l~~L~~L~L~~n~l~~~~~-~~~ 172 (691)
.+|.++++|++|+|++|.+ .+..+. +..+++|++|++++|.+.. ++.. +..+++|++|++++|.+++..+ ..+
T Consensus 67 ~~f~~L~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~ 144 (844)
T 3j0a_A 67 EAFRNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144 (844)
T ss_dssp TTTSSCTTCCEEECTTCCC--CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG
T ss_pred HHHCCCCCCCEEECCCCCC--CCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHH
T ss_conf 7853787788887989958--53197671578665870176788973404676455667999888987864232566557
Q ss_pred HHCCCCCCCEEECCCCCCCCCCCCCC-----CCCCEEECCCCCCCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 63075951699878876886699999-----9837895417527656999997433-36898724998648989899970
Q 005542 173 WDIGVHTLFRLDLSRNFLTSIDHLPW-----KNLEFLTLDSNLLQGSLPNLPPHMT-YAKGCNLTYLRLSGNHLEGPLPP 246 (691)
Q Consensus 173 ~~l~~~~L~~L~ls~n~l~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~ 246 (691)
..+ ++|+.|++++|.+.+..+..+ ++|+.|+++.|.+.+..+..+.... ......|+.|++++|.+....+.
T Consensus 145 ~~L--~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 145 GKL--NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp GTC--SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred HHC--CCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHH
T ss_conf 638--898989898984776678875355677503578978866655455332237722357400796578868656778
Q ss_pred CCCC---CCCCCEEEEECCC---------CCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 2539---9999789911883---------877769456799--9998898538846566862354999996998558513
Q 005542 247 SLSN---CVNLQVLDVGNNN---------LSGPIPECLGNS--TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSL 312 (691)
Q Consensus 247 ~l~~---l~~L~~L~L~~n~---------l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 312 (691)
.+.. ...++.+.+..+. +.......+.++ ++|+.|++++|.+.+..+..|..+++|+.|++++|.+
T Consensus 223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 302 (844)
T 3j0a_A 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302 (844)
T ss_dssp GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC
T ss_pred HHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 88764274410011212122346644456688985565255547861898979945515863452589999998979818
Q ss_pred CCCCCCHHH-CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHH
Q ss_conf 345530000-1588769842784333487232378873599866982558799356398974299944898876743221
Q 005542 313 SGPIPEYLG-NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWL 391 (691)
Q Consensus 313 ~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 391 (691)
.+..+..+. ..+|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++.
T Consensus 303 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i----- 377 (844)
T 3j0a_A 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI----- 377 (844)
T ss_dssp CEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----
T ss_conf 987968836888999898989978851878846899999898989987762866613788899988989977861-----
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 29999639990167376768998987799986399867875856789676620122321358863100012356653101
Q 005542 392 DVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYES 471 (691)
Q Consensus 392 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~l~~~~~~~~~l~~l~~~~~~~ 471 (691)
..+++|+.|++++|++..... ....++.+++++|.+++......+..++.++.++...+.+..+....
T Consensus 378 ~~~~~L~~L~l~~N~l~~l~~------~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------ 445 (844)
T 3j0a_A 378 HFIPSIPDIFLSGNKLVTLPK------INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ------ 445 (844)
T ss_dssp SSCCSCSEEEEESCCCCCCCC------CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS------
T ss_pred CCCCCCCHHCCCCCCCCCCCC------CCCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCC------
T ss_conf 688982320058997231455------45543122145675345755666512776666667787125555433------
Q ss_pred EEEEECCCCHHHHHHCCCCCEEECCCCCCC-----CCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 588731770234320265138995377154-----227754441477762102252144576600228999998869998
Q 005542 472 ISLTMKGNDIQMERILTTFATIDLSSNRFQ-----GEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 546 (691)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 546 (691)
....+++|+.|++++|.+. +..+..+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|
T Consensus 446 -----------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 446 -----------TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp -----------SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred -----------CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCC
T ss_conf -----------356687310024777736441013553555447553657778898565539557045012215699999
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCCC
Q ss_conf 58875850232899999997517820004999999886477644788899-------------------89999898899
Q 005542 547 KLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGIDSYSGNVGL-------------------CGFPLSKICRI 607 (691)
Q Consensus 547 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~n~~l-------------------cg~~~~~~c~~ 607 (691)
++++..+..+. ++|+.|++++|++++.+|.. +..+....+.+|+.. +|.|....|..
T Consensus 515 ~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 515 RLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVY 590 (844)
T ss_dssp CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred CCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH--HCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 78745710110--04558889888478889668--377688993199702536618999999736853026600275578
Q ss_pred CCCCCC
Q ss_conf 999999
Q 005542 608 DEAPEP 613 (691)
Q Consensus 608 ~~~~~~ 613 (691)
+.....
T Consensus 591 p~~~~g 596 (844)
T 3j0a_A 591 PDSFSG 596 (844)
T ss_dssp CSSSCS
T ss_pred CHHHCC
T ss_conf 066579
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=409.22 Aligned_cols=533 Identities=21% Similarity=0.198 Sum_probs=226.1
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 364566155876668999997749987689661028999------------99976446880112899998998667647
Q 005542 24 EVKAITANIPAVTSEGIYPGQLRHLDLGNNHFVGKIPAS------------LDNQLIGSIPSSIFELVNLTFVSLSFNNF 91 (691)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~------------~~n~~~~~ip~~~~~l~~L~~L~Ls~n~i 91 (691)
.++|....+..++.. -++++++|++++|.+.+..+.. ..|.+.+..|..+.++++|++|++++|.+
T Consensus 8 ~~~cs~~~L~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 8 VADCSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EEECCSSCCSSCCSC--SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 448777980526412--488876888989977875978871787675887889964856977874066768888999856
Q ss_pred CCCCCHHHHCCCCCCCEEECCCCCCEEEEECCC-CCCCCCCCEEECCCCCCCCC-HHHHHCCCCCCEEECCCCCCCCCCC
Q ss_conf 320081210699989879711787301340569-88899866898227889983-0654099998999853896975589
Q 005542 92 SGSVELYDFAKLKNLKYLILSNISLSVSTKLTV-NSSFPNLWALGLSACNISEF-PDILKTQHQLDWLDLSENQIRGRIP 169 (691)
Q Consensus 92 ~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~ 169 (691)
+ .++..+|.++++|++|++++|.+ .+..+. +..+++|++|++++|.+... +..+..+++|++|++++|.+++..+
T Consensus 86 ~-~l~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 86 S-QLSDKTFAFCTNLTELHLMSNSI--QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp C-CCCTTTTTTCTTCSEEECCSSCC--CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred C-CCCHHHHCCCCCCCEEECCCCCC--CCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 7-56854530388889898989966--85396674156788889898995246672111245567779745884365297
Q ss_pred HHHHHCCCCCCCEEECCCCCCCCCCCCC------------------------------CCCCCEEECCCCCCCCCCCCCC
Q ss_conf 4676307595169987887688669999------------------------------9983789541752765699999
Q 005542 170 SWMWDIGVHTLFRLDLSRNFLTSIDHLP------------------------------WKNLEFLTLDSNLLQGSLPNLP 219 (691)
Q Consensus 170 ~~~~~l~~~~L~~L~ls~n~l~~~~~~~------------------------------l~~L~~L~L~~n~l~~~~~~~~ 219 (691)
..+.....++|+.|++++|.+.+..+.. .++|+.|++++|.+.+..+..+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHH
T ss_conf 88624466632179888982565581555322344554305664680567778777531510088745774364686675
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC-----CCC-
Q ss_conf 74333689872499864898989997025399999789911883877769456799999889853884656-----686-
Q 005542 220 PHMTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSG-----PIP- 293 (691)
Q Consensus 220 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~- 293 (691)
.... .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+++++...+ .+|
T Consensus 243 ~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 243 LGLK---WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp GGGG---GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred HCCC---CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCC
T ss_conf 1467---6778887787887675680211674105685577885676586562678885577363313213333355454
Q ss_pred ---CCCCCCCCCCEEECCCCCCCCCCCCHHHC-----------------------------CCCCEEECCCCCCCCCCCC
Q ss_conf ---23549999969985585133455300001-----------------------------5887698427843334872
Q 005542 294 ---ECLGNSTSLSFLDVGNNSLSGPIPEYLGN-----------------------------STLEVLDMRMNKFSGSLPQ 341 (691)
Q Consensus 294 ---~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------~~L~~L~l~~n~~~~~~~~ 341 (691)
..|..+++|+.|++++|.+.+..+..+.. .+|+.+++++|.+.+..+.
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~ 399 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred CCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHH
T ss_conf 38656246777888879898268788557406568728988798014432353220245568676688999977767754
Q ss_pred CCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCC--CCCCCCCCC
Q ss_conf 32378873599866982558799-356398974299944898876743221299996399901673767--689989877
Q 005542 342 TFGKSCVLVSLKLNGNRLEGPLP-PSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCG--PIGDTKTRV 418 (691)
Q Consensus 342 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~ 418 (691)
.+..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+ .
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~ 477 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--Q 477 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--T
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCC--C
T ss_conf 42077888888677875754357553257546127844899754227645500754310110146442256677645--5
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCCEEECCCC
Q ss_conf 99986399867875856789676620122321358863100012356653101588731770234320265138995377
Q 005542 419 PFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSN 498 (691)
Q Consensus 419 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 498 (691)
.+++|+.|++++|.+++..+ ..+.++..++.++...+.+..+...... +........+++|+.|++++|
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNNLARLWKHANP----------GGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCGGGGSTTST----------TSCCCTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCCCCCCCH-HHHCCCCCCCEEECCCCCCCCCCHHHCC----------CCCCHHHCCCCCCCEEECCCC
T ss_conf 57878999899998776794-4634553468885889973000000046----------774142337998888889999
Q ss_pred CCCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCEEECCCC
Q ss_conf 15422775444147776210225214457660022899999886999858875850232-89999999751782000499
Q 005542 499 RFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLA-SLNYLSVLNLSNNQLEGPIP 577 (691)
Q Consensus 499 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~ls~n~l~~~~p 577 (691)
.+...++..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..+..+. .+++|+.+++++|++.|.++
T Consensus 547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 78877977734666752238999977767976837898888898999968705966830114665779831897025776
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=407.12 Aligned_cols=514 Identities=18% Similarity=0.172 Sum_probs=318.0
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHC
Q ss_conf 00364566155876668999997749987689661028999999764468801128999989986676473200812106
Q 005542 22 SFEVKAITANIPAVTSEGIYPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFA 101 (691)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~n~~~~~ip~~~~~l~~L~~L~Ls~n~i~~~i~~~~l~ 101 (691)
...++|....+..++.. -++.+++|++++|.+.+..+ ..|.++++|++|++++|.+.+..+ .+|.
T Consensus 14 ~~~~~c~~~~l~~iP~~--l~~~l~~L~Ls~n~i~~~~~------------~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~ 78 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGT--LPNSTECLEFSFNVLPTIQN------------TTFSRLINLTFLDLTRCQIYWIHE-DTFQ 78 (606)
T ss_dssp TTEEECTTSCCSSCCTT--SCTTCCEEECTTCCCSEECT------------TTSTTCTTCSEEECTTCCCCEECT-TTTT
T ss_pred CCEEECCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCH------------HHHCCCCCCEEEECCCCCCCEECH-HHCC
T ss_conf 72377777980628677--89867589815873471796------------672567665289788983552485-1136
Q ss_pred CCCCCCEEECCCCCCEEEEECCC-CCCCCCCCEEECCCCCCCCC-HHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCC
Q ss_conf 99989879711787301340569-88899866898227889983-06540999989998538969755894676307595
Q 005542 102 KLKNLKYLILSNISLSVSTKLTV-NSSFPNLWALGLSACNISEF-PDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHT 179 (691)
Q Consensus 102 ~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 179 (691)
++++|++|++++|.+ .+..+. +..+++|++|++++|.+..+ +..+..+++|++|++++|.+.+.....+..+ ++
T Consensus 79 ~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~ 154 (606)
T 3t6q_A 79 SQHRLDTLVLTANPL--IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT--EK 154 (606)
T ss_dssp TCTTCCEEECTTCCC--SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC--TT
T ss_pred CCCCCCEEECCCCCC--CCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCC--CC
T ss_conf 843367644889856--54586552344215376521267665781012237822389887983411476545687--65
Q ss_pred CCEEECCCCCCCCCCC---CCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC--------------
Q ss_conf 1699878876886699---9999837--89541752765699999743336898724998648989--------------
Q 005542 180 LFRLDLSRNFLTSIDH---LPWKNLE--FLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHL-------------- 240 (691)
Q Consensus 180 L~~L~ls~n~l~~~~~---~~l~~L~--~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-------------- 240 (691)
|+.|++++|.+....+ ..+++|+ .|++++|.+.+..+..+.. ..++.++++++..
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~l~~~~l~ 228 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS------AVFQSLNFGGTQNLLVIFKGLKNSTIQ 228 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT------CEEEEEECTTCSCHHHHHHHTTTCEEE
T ss_pred CCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH------CCCCCCCCCCCHHHHHHHHHCCCCCHH
T ss_conf 68777656844554965633221564038966798147548667300------100135567726677776513356442
Q ss_pred ------------CCCCCCCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf ------------899970253999--997899118838777694567999998898538846566862354999996998
Q 005542 241 ------------EGPLPPSLSNCV--NLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLD 306 (691)
Q Consensus 241 ------------~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 306 (691)
....+..+..+. +|+.+++++|.+.+..+..|..+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus 229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~ 307 (606)
T 3t6q_A 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307 (606)
T ss_dssp EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEE
T ss_pred HEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEE
T ss_conf 200201102641226866743032075059994457658557777445667888956288267-7782141654688897
Q ss_pred CCCCCCCCCCCCHHH-CCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCC
Q ss_conf 558513345530000-1588769842784333487-23237887359986698255879--9356398974299944898
Q 005542 307 VGNNSLSGPIPEYLG-NSTLEVLDMRMNKFSGSLP-QTFGKSCVLVSLKLNGNRLEGPL--PPSLVNCRHLEVIDVGNNQ 382 (691)
Q Consensus 307 l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~ 382 (691)
+++|.+.+..+..+. ..+|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.
T Consensus 308 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp CTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCC
T ss_conf 71687686760233015768988898997444346245506675898878899666456752210567888989898996
Q ss_pred CCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 87674322129999639990167376768998987799986399867875856789676620122321358863100012
Q 005542 383 INETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMR 462 (691)
Q Consensus 383 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~l~~~~~~~~~l~ 462 (691)
+.+..+..+..+++|+.|++++|.+.+..+... +..+++|+.|++++|.+.+..|. .+..++.++.++...+.+....
T Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP-FQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp CEEECTTTTTTCTTCSEEECTTCCEECCTTCCT-TTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCGGGE
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCCCCHH-HHHCCCCCCEEECCCCCCCCCC
T ss_conf 775788873477457768788886777565212-41765588898989855776877-8737887888989899888543
Q ss_pred CCCCCCCEEEEEEECCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 35665310158873177023432026513899537715422775444147776210225214457660022899999886
Q 005542 463 SLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLD 542 (691)
Q Consensus 463 ~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 542 (691)
.. .......+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..|+.+..++.| .|+
T Consensus 466 ~~---------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 466 IQ---------------KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp EC---------------SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CC---------------CCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEE
T ss_conf 45---------------43124048876688799996670686463265678889898980686896684756651-898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCC
Q ss_conf 9998588758502328999999975178200049999
Q 005542 543 LSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG 579 (691)
Q Consensus 543 Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~ 579 (691)
+++|++++.+|..+..+++|+.+++++|++.|.++..
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred CCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCH
T ss_conf 7689414268766256778788967799861667757
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=394.35 Aligned_cols=505 Identities=20% Similarity=0.174 Sum_probs=318.9
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHH
Q ss_conf 50036456615587666899999774998768966102899999976446880112899998998667647320081210
Q 005542 21 KSFEVKAITANIPAVTSEGIYPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDF 100 (691)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~n~~~~~ip~~~~~l~~L~~L~Ls~n~i~~~i~~~~l 100 (691)
....++|....+..++.. -++++++|++++|.+.+..+ ..+.++++|++|++++|.+++..+ .+|
T Consensus 12 ~~~~~~c~~~~l~~ip~~--~~~~l~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~Ls~n~l~~i~~-~~~ 76 (606)
T 3vq2_A 12 PNITYQCMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKS------------YSFSNFSELQWLDLSRCEIETIED-KAW 76 (606)
T ss_dssp TTTEEECTTSCCSSCCTT--SCTTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTCCCCEECT-TTT
T ss_pred CCCCEECCCCCCCCCCCC--CCCCCCEEECCCCCCCEECH------------HHCCCCCCCCEEECCCCCCCCCCH-HHH
T ss_conf 897057468884518988--88876788788897577375------------455577667488688773664397-773
Q ss_pred CCCCCCCEEECCCCCCEEEEECCC-CCCCCCCCEEECCCCCCCCCH-HHHHCCCCCCEEECCCCCCCC-CCCHHHHHCCC
Q ss_conf 699989879711787301340569-888998668982278899830-654099998999853896975-58946763075
Q 005542 101 AKLKNLKYLILSNISLSVSTKLTV-NSSFPNLWALGLSACNISEFP-DILKTQHQLDWLDLSENQIRG-RIPSWMWDIGV 177 (691)
Q Consensus 101 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 177 (691)
.++++|++|++++|.+ .+..+. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+.+ .+|..+..+
T Consensus 77 ~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-- 152 (606)
T 3vq2_A 77 HGLHHLSNLILTGNPI--QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL-- 152 (606)
T ss_dssp TTCTTCCEEECTTCCC--CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--
T ss_pred HCHHHCCEEECCCCCC--CCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHC--
T ss_conf 0601068867879856--304852207865378887037755544511348988779896878852325306867326--
Q ss_pred CCCCEEECCCCCCCCCCCCCCC---C----CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCC
Q ss_conf 9516998788768866999999---8----37895417527656999997433368987249986489898-99970253
Q 005542 178 HTLFRLDLSRNFLTSIDHLPWK---N----LEFLTLDSNLLQGSLPNLPPHMTYAKGCNLTYLRLSGNHLE-GPLPPSLS 249 (691)
Q Consensus 178 ~~L~~L~ls~n~l~~~~~~~l~---~----L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~ 249 (691)
++|++|++++|.+.+..+..+. + +.++++++|.+....+..+.. .+|+.|++++|.+. ...+..+.
T Consensus 153 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~------~~L~~L~L~~n~~~~~~~~~~~~ 226 (606)
T 3vq2_A 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG------IKLHELTLRGNFNSSNIMKTCLQ 226 (606)
T ss_dssp TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT------CEEEEEEEESCCSCHHHHHHHHH
T ss_pred CCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCC------CEEEEEECCCCCCCHHHHHHHHC
T ss_conf 777788766885310573341212034200243004689753257110567------60433524678561667788860
Q ss_pred CCCCCCEEEE---------------------------------ECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 9999978991---------------------------------1883877769456799999889853884656686235
Q 005542 250 NCVNLQVLDV---------------------------------GNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECL 296 (691)
Q Consensus 250 ~l~~L~~L~L---------------------------------~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 296 (691)
.++.++.+.+ ..+.+.+..+. +..+++|+.|+++++.+.. ++ .+
T Consensus 227 ~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l 303 (606)
T 3vq2_A 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DV 303 (606)
T ss_dssp TTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHH-HH-HC
T ss_conf 266565231411110367741026817766665434745012366555543222-3548878987714766044-35-43
Q ss_pred CCCCCCCEEECCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCC
Q ss_conf 499999699855851334553000015887698427843334872323788735998669825587--993563989742
Q 005542 297 GNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGP--LPPSLVNCRHLE 374 (691)
Q Consensus 297 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~ 374 (691)
..+++|+.|++++|.+ +.+|.. ...+|+.|++++|...... .+..+++|+.|++++|.+.+. .+..+..+++|+
T Consensus 304 ~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp CTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred CCCCCCCEEECCCCCC-CCCCCC-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 3401177897646667-654667-8875564454478685310--00248988879775873687752012214677554
Q ss_pred EEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCC
Q ss_conf 99944898876743221299996399901673767689-98987799986399867875856789676620122321358
Q 005542 375 VIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIG-DTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDD 453 (691)
Q Consensus 375 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~l~~ 453 (691)
.|++++|.+.+ .+..+..+++|+.|++++|.+.+..+ ..+ ..+++|+.|++++|.+.+..|.. +.+++.++.++.
T Consensus 380 ~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l 455 (606)
T 3vq2_A 380 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKM 455 (606)
T ss_dssp EEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEEC
T ss_pred EEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHH--HCCCCCCEEECCCCCCCCCCHHH-HCCCCCCCEEEC
T ss_conf 86788995300-055406888889658988705875376456--46213788989689787433555-347787898989
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 86310001235665310158873177023432026513899537715422775444147776210225214457660022
Q 005542 454 NSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLR 533 (691)
Q Consensus 454 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 533 (691)
..+.+.... .......+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+.
T Consensus 456 ~~n~l~~~~-----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 456 AGNSFKDNT-----------------LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp TTCEEGGGE-----------------ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred CCCCCCCCC-----------------HHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 898379854-----------------677604578899898988857764865615464689898989957874877706
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCEEECCCCCC
Q ss_conf 899999886999858875850232899-9999975178200049999
Q 005542 534 NLTELESLDLSSNKLAGRIPTQLASLN-YLSVLNLSNNQLEGPIPGG 579 (691)
Q Consensus 534 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~ls~n~l~~~~p~~ 579 (691)
.+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.|.++..
T Consensus 519 ~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 519 QLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 8876898889898376-668767521021748876289866477648
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=392.47 Aligned_cols=549 Identities=20% Similarity=0.171 Sum_probs=383.7
Q ss_pred CCEEECCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
Q ss_conf 749987689661028999----------9997644688011289999899866764732008121069998987971178
Q 005542 45 LRHLDLGNNHFVGKIPAS----------LDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNI 114 (691)
Q Consensus 45 L~~L~Ls~n~l~~~~~~~----------~~n~~~~~ip~~~~~l~~L~~L~Ls~n~i~~~i~~~~l~~l~~L~~L~Ls~n 114 (691)
-+.+|.++++++. +|.. ..|.+.+..+..+.++++|++|++++|.+.+..+ .++.++++|++|++++|
T Consensus 6 ~~~~~cs~~~L~~-ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 6 HEVADCSHLKLTQ-VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSEEECCSSCCSS-CCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSS
T ss_pred CCEEECCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCH-HHHHCCCCCCEEECCCC
T ss_conf 8744877798052-641248887688898997787597887178767588788996485697-78740667688889998
Q ss_pred CCEEEEECC-CCCCCCCCCEEECCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC
Q ss_conf 730134056-9888998668982278899830-65409999899985389697558946763075951699878876886
Q 005542 115 SLSVSTKLT-VNSSFPNLWALGLSACNISEFP-DILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTS 192 (691)
Q Consensus 115 ~l~~~~~~~-~~~~l~~L~~L~L~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ls~n~l~~ 192 (691)
.+. ...+ .+..+++|++|++++|.+..++ ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+.+
T Consensus 84 ~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 84 ELS--QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL--ENLQELLLSNNKIQA 159 (680)
T ss_dssp CCC--CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC--TTCCEEECCSSCCCC
T ss_pred CCC--CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCC--CCCCEEECCCCCCCC
T ss_conf 567--5685453038888989898996685396674156788889898995246672111245--567779745884365
Q ss_pred CCCC-----CCCCCCEEECCCCCCCCCCCCCCCCCCCC----------------------CCCCCCEEECCCCCCCCCCC
Q ss_conf 6999-----99983789541752765699999743336----------------------89872499864898989997
Q 005542 193 IDHL-----PWKNLEFLTLDSNLLQGSLPNLPPHMTYA----------------------KGCNLTYLRLSGNHLEGPLP 245 (691)
Q Consensus 193 ~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~~~----------------------~~~~L~~L~L~~n~l~~~~~ 245 (691)
..+. .+++|+.|++++|.+.+..+..+...... ..++++.|++++|.+.+..+
T Consensus 160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~ 239 (680)
T 1ziw_A 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239 (680)
T ss_dssp BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT
T ss_pred CCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCH
T ss_conf 29788624466632179888982565581555322344554305664680567778777531510088745774364686
Q ss_pred CCCCCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-----CC-
Q ss_conf 02539999--97899118838777694567999998898538846566862354999996998558513345-----53-
Q 005542 246 PSLSNCVN--LQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGP-----IP- 317 (691)
Q Consensus 246 ~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-----~~- 317 (691)
..+..++. |+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|...+. +|
T Consensus 240 ~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCC
T ss_conf 67514676778887787887675680211674105685577885676586562678885577363313213333355454
Q ss_pred ----CHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCC--CCCCCEEECCCCCCCCCCCH
Q ss_conf ----000015887698427843334872323788735998669825587--9935639--89742999448988767432
Q 005542 318 ----EYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGP--LPPSLVN--CRHLEVIDVGNNQINETFPH 389 (691)
Q Consensus 318 ----~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~--l~~L~~L~l~~n~l~~~~~~ 389 (691)
.+....+|+.|++++|.+.+..+..+..+++|++|++++|.+... ....+.. .++|+.|++++|.+.+..+.
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~ 399 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred CCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHH
T ss_conf 38656246777888879898268788557406568728988798014432353220245568676688999977767754
Q ss_pred HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf 21299996399901673767689989877999863998678758567896766201223213588631000123566---
Q 005542 390 WLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNY--- 466 (691)
Q Consensus 390 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~l~~~~~~~~~l~~l~~--- 466 (691)
.+..+++|+.|++++|.+.+.++.. .+..+++|+.|++++|.+.+..+. .+..++.++.++...+....+.....
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQ-EWRGLENIFEIYLSYNKYLQLTRN-SFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSG-GGTTCTTCCEEECCSCSEEECCTT-TTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCEECHH-HHHCCCCCCCCHHCCCCCCCCCCCCCCCC
T ss_conf 4207788888867787575435755-325754612784489975422764-55007543101101464422566776455
Q ss_pred --CCCEEEEEEECC---CCHHHHHHCCCCCEEECCCCCCCCCCC--------HHHHCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf --531015887317---702343202651389953771542277--------5444147776210225214457660022
Q 005542 467 --SYYESISLTMKG---NDIQMERILTTFATIDLSSNRFQGEIS--------EVLGKLNSLKSLNISHNNLTGGIPSSLR 533 (691)
Q Consensus 467 --~~~~~~~~~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 533 (691)
.....+.+..+. ........+++|+.|++++|.+.+..+ ..+..+++|+.|+|++|.++...+..|.
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 57878999899998776794463455346888588997300000004677414233799888888999978877977734
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCC--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999988699985887585023289999999751782000499999--988647764478889989999
Q 005542 534 NLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGP--QFNTFGIDSYSGNVGLCGFPL 601 (691)
Q Consensus 534 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~--~~~~~~~~~~~~n~~lcg~~~ 601 (691)
++++|+.|++++|++++..+..|..+++|+.|++++|++++..|... .+..+....+.+|+..|+++.
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 6667522389999777679768378988888989999687059668301146657798318970257766
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=387.97 Aligned_cols=510 Identities=20% Similarity=0.200 Sum_probs=399.2
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCEEEEECC
Q ss_conf 77499876896610289999997644688011289999899866764732008121069998987971178730134056
Q 005542 44 QLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLT 123 (691)
Q Consensus 44 ~L~~L~Ls~n~l~~~~~~~~~n~~~~~ip~~~~~l~~L~~L~Ls~n~i~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 123 (691)
.-+.++.++..+. ++|..+.. ++++|++++|.+++..+ .+|.++++|++|++++|.+ ....+
T Consensus 13 ~~~~~~c~~~~l~-------------~iP~~l~~--~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i--~~~~~ 74 (606)
T 3t6q_A 13 VNKTYNCENLGLN-------------EIPGTLPN--STECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQI--YWIHE 74 (606)
T ss_dssp TTTEEECTTSCCS-------------SCCTTSCT--TCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCC--CEECT
T ss_pred CCCEEECCCCCCC-------------CCCCCCCC--CCCEEECCCCCCCCCCH-HHHCCCCCCEEEECCCCCC--CEECH
T ss_conf 8723777779806-------------28677898--67589815873471796-6725676652897889835--52485
Q ss_pred C-CCCCCCCCEEECCCCCCCCC-HHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCC---CCC
Q ss_conf 9-88899866898227889983-065409999899985389697558946763075951699878876886699---999
Q 005542 124 V-NSSFPNLWALGLSACNISEF-PDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPW 198 (691)
Q Consensus 124 ~-~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ls~n~l~~~~~---~~l 198 (691)
. +..+++|++|++++|.+..+ |..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+.+... ..+
T Consensus 75 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l 152 (606)
T 3t6q_A 75 DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ--KTLESLYLGSNHISSIKLPKGFPT 152 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC--TTCCEEECCSSCCCCCCCCTTCCC
T ss_pred HHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCC--CCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 113684336764488985654586552344215376521267665781012237--822389887983411476545687
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCC-----------
Q ss_conf 983789541752765699999743336898724--9986489898999702539999978991188387-----------
Q 005542 199 KNLEFLTLDSNLLQGSLPNLPPHMTYAKGCNLT--YLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS----------- 265 (691)
Q Consensus 199 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~----------- 265 (691)
++|++|++++|.+.+..+..+.. +.+++ .|++++|.+.+..+..+. ...|+.|++++|...
T Consensus 153 ~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~ 226 (606)
T 3t6q_A 153 EKLKVLDFQNNAIHYLSKEDMSS-----LQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNST 226 (606)
T ss_dssp TTCCEEECCSSCCCEECHHHHHT-----TTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCE
T ss_pred CCCCEEECCCCCCCCCCHHHHHH-----HCCCCEEEEECCCCCCCCCCHHHHH-HCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 65687776568445549656332-----2156403896679814754866730-01001355677266777765133564
Q ss_pred ---------------CCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCEE
Q ss_conf ---------------77694567999--9988985388465668623549999969985585133455300001588769
Q 005542 266 ---------------GPIPECLGNST--RLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVL 328 (691)
Q Consensus 266 ---------------~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 328 (691)
...+..+..+. +|+.+++++|.+.+..+..|..+++|+.|++++|.+...........+|+.|
T Consensus 227 l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L 306 (606)
T 3t6q_A 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKL 306 (606)
T ss_dssp EEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEE
T ss_pred HHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCEE
T ss_conf 42200201102641226866743032075059994457658557777445667888956288267778214165468889
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC--CHHHCCCCCCCEEECCCC
Q ss_conf 8427843334872323788735998669825587993-5639897429994489887674--322129999639990167
Q 005542 329 DMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPP-SLVNCRHLEVIDVGNNQINETF--PHWLDVLPELQVLTLRSN 405 (691)
Q Consensus 329 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n 405 (691)
++++|.+....+..+..+++|+.|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|
T Consensus 307 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp ECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred ECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCC
T ss_conf 77168768676023301576898889899744434624550667589887889966645675221056788898989899
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 37676899898779998639986787585678967662012232135886310001235665310158873177023432
Q 005542 406 RFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMER 485 (691)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 485 (691)
.+.+..+..+ ..+++|+.|++++|.+.+..+...+..++.++.++...+.+.... .....
T Consensus 387 ~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------~~~~~ 446 (606)
T 3t6q_A 387 EPLSLKTEAF--KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS------------------EQLFD 446 (606)
T ss_dssp SCEEECTTTT--TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC------------------TTTTT
T ss_pred CCCCCCHHHH--CCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC------------------HHHHH
T ss_conf 6775788873--477457768788886777565212417655888989898557768------------------77873
Q ss_pred HCCCCCEEECCCCCCCCC---CCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 026513899537715422---77544414777621022521445766002289999988699985887585023289999
Q 005542 486 ILTTFATIDLSSNRFQGE---ISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYL 562 (691)
Q Consensus 486 ~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 562 (691)
.+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..++.|
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 78878889898998885434543124048876688799996670686463265678889898980686896684756651
Q ss_pred CEEECCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99975178200049999-998864776447888998999
Q 005542 563 SVLNLSNNQLEGPIPGG-PQFNTFGIDSYSGNVGLCGFP 600 (691)
Q Consensus 563 ~~L~ls~n~l~~~~p~~-~~~~~~~~~~~~~n~~lcg~~ 600 (691)
.|++++|++++..|.. ..+..+....+.+|+..|+++
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred -EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf -89876894142687662567787889677998616677
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=386.28 Aligned_cols=516 Identities=22% Similarity=0.197 Sum_probs=356.7
Q ss_pred CCEEEEEEEEC-CCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 50036456615-5876668-999997749987689661028999999764468801128999989986676473200812
Q 005542 21 KSFEVKAITAN-IPAVTSE-GIYPGQLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELY 98 (691)
Q Consensus 21 ~~~~~~~~~~~-~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~n~~~~~ip~~~~~l~~L~~L~Ls~n~i~~~i~~~ 98 (691)
.+++...+..+ +..+... -..+++|++|||++|...+.++ |..|.++++|++|+|++|.+.+..| .
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-----------~~~f~~L~~L~~L~Ls~N~l~~~~p-~ 91 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-----------KEAFRNLPNLRILDLGSSKIYFLHP-D 91 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC-----------TTTTSSCTTCCEEECTTCCCCEECT-T
T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCC-----------HHHHCCCCCCCEEECCCCCCCCCCH-H
T ss_conf 986888887786783296677662137088678997744419-----------7785378778888798995853197-6
Q ss_pred HHCCCCCCCEEECCCCCCEEEEECCC---CCCCCCCCEEECCCCCCCCC--HHHHHCCCCCCEEECCCCCCCCCCCHHHH
Q ss_conf 10699989879711787301340569---88899866898227889983--06540999989998538969755894676
Q 005542 99 DFAKLKNLKYLILSNISLSVSTKLTV---NSSFPNLWALGLSACNISEF--PDILKTQHQLDWLDLSENQIRGRIPSWMW 173 (691)
Q Consensus 99 ~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~~l~~L~~L~L~~~~l~~l--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 173 (691)
.|.++++|++|++++|.+ .+..+. +..+++|++|++++|.+..+ +..+..+++|++|++++|.+.+..+..+.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGL--SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp SSCSCSSCCCEECTTCCC--SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HCCCCCCCCEEECCCCCC--CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCC
T ss_conf 715786658701767889--734046764556679998889878642325665576388989898989847766788753
Q ss_pred HCCCCCCCEEECCCCCCCCCCCCC---CC------CCCEEECCCCCCCCCCCCCCCCCC---------------------
Q ss_conf 307595169987887688669999---99------837895417527656999997433---------------------
Q 005542 174 DIGVHTLFRLDLSRNFLTSIDHLP---WK------NLEFLTLDSNLLQGSLPNLPPHMT--------------------- 223 (691)
Q Consensus 174 ~l~~~~L~~L~ls~n~l~~~~~~~---l~------~L~~L~L~~n~l~~~~~~~~~~~~--------------------- 223 (691)
.+..++|+.|+++.|.+.+..+.. +. .|+.|++++|.+.+..+..+....
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCC
T ss_conf 55677503578978866655455332237722357400796578868656778887642744100112121223466444
Q ss_pred ----------CCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf ----------368--98724998648989899970253999997899118838777694567999998898538846566
Q 005542 224 ----------YAK--GCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGP 291 (691)
Q Consensus 224 ----------~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 291 (691)
+.. .++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+.
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred CCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 56688985565255547861898979945515863452589999998979818987968836888999898989978851
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCHHH-CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 862354999996998558513345530000-1588769842784333487232378873599866982558799356398
Q 005542 292 IPECLGNSTSLSFLDVGNNSLSGPIPEYLG-NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNC 370 (691)
Q Consensus 292 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 370 (691)
.+..|..+++|+.|++++|.+....+..+. ..+|+.|++++|.+... ..+++|+.+++++|.+. .+|.. .
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~ 400 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---N 400 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---C
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCCCCC-CCCCC---C
T ss_conf 878846899999898989987762866613788899988989977861-----68898232005899723-14554---5
Q ss_pred CCCCEEECCCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 974299944898876743-2212999963999016737676899898779998639986787585678967662012232
Q 005542 371 RHLEVIDVGNNQINETFP-HWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMM 449 (691)
Q Consensus 371 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~ 449 (691)
.+++.+++++|.+.+... ..+..+++|+.|++++|++.+..+... ...+++|+.|++++|.++...+...
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~~~~~~-------- 471 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQLAWETEL-------- 471 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSSSCCSCC--------
T ss_pred CCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC--------
T ss_conf 5431221456753457556665127766666677871255554333-5668731002477773644101355--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEECCCCCCCCCCC
Q ss_conf 13588631000123566531015887317702343202651389953771542277544414777621022521445766
Q 005542 450 RRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIP 529 (691)
Q Consensus 450 ~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 529 (691)
.......+++|+.|+|++|.+.+.++..+..+++|+.|+|++|.+++..+
T Consensus 472 ------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 521 (844)
T 3j0a_A 472 ------------------------------CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521 (844)
T ss_dssp ------------------------------CSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred ------------------------------CHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCH
T ss_conf ------------------------------35554475536577788985655395570450122156999997874571
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCC--CCCCCCC--CCCCCCCCCCC
Q ss_conf 00228999998869998588758502328999999975178200049999998864--7764478--88998999989
Q 005542 530 SSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTF--GIDSYSG--NVGLCGFPLSK 603 (691)
Q Consensus 530 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~~--~~~~~~~--n~~lcg~~~~~ 603 (691)
..+. ++|+.|++++|++++.+|..+ .+|+.+++++|++.|.|+........ ....+.| ....|..|...
T Consensus 522 ~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~ 594 (844)
T 3j0a_A 522 NDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSF 594 (844)
T ss_dssp CCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSS
T ss_pred HHHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 0110--045588898884788896683---776889931997025366189999997368530266002755780665
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=384.58 Aligned_cols=504 Identities=19% Similarity=0.173 Sum_probs=402.8
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCEEEEECC
Q ss_conf 77499876896610289999997644688011289999899866764732008121069998987971178730134056
Q 005542 44 QLRHLDLGNNHFVGKIPASLDNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLT 123 (691)
Q Consensus 44 ~L~~L~Ls~n~l~~~~~~~~~n~~~~~ip~~~~~l~~L~~L~Ls~n~i~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 123 (691)
..+.++.+++.++ .+|..+. +++++|++++|.++ .++...|.++++|++|++++|.+ .+..+
T Consensus 12 ~~~~~~c~~~~l~-------------~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~ 73 (606)
T 3vq2_A 12 PNITYQCMDQKLS-------------KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEI--ETIED 73 (606)
T ss_dssp TTTEEECTTSCCS-------------SCCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCC--CEECT
T ss_pred CCCCEECCCCCCC-------------CCCCCCC--CCCCEEECCCCCCC-EECHHHCCCCCCCCEEECCCCCC--CCCCH
T ss_conf 8970574688845-------------1898888--87678878889757-73754555776674886887736--64397
Q ss_pred C-CCCCCCCCEEECCCCCCCCC-HHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCC-C---CC
Q ss_conf 9-88899866898227889983-06540999989998538969755894676307595169987887688669-9---99
Q 005542 124 V-NSSFPNLWALGLSACNISEF-PDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSID-H---LP 197 (691)
Q Consensus 124 ~-~~~l~~L~~L~L~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ls~n~l~~~~-~---~~ 197 (691)
. +..+++|++|++++|.+..+ |..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+.+.. + ..
T Consensus 74 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~lp~~~~~ 151 (606)
T 3vq2_A 74 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL--ITLKKLNVAHNFIHSCKLPAYFSN 151 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTC--TTCCEEECCSSCCCCCCCCGGGGT
T ss_pred HHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCEECHHHHHH
T ss_conf 773060106886787985630485220786537888703775554451134898--877989687885232530686732
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC----CCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCC-CCCCCCC
Q ss_conf 99837895417527656999997433368987----249986489898999702539999978991188387-7769456
Q 005542 198 WKNLEFLTLDSNLLQGSLPNLPPHMTYAKGCN----LTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS-GPIPECL 272 (691)
Q Consensus 198 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~----L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l 272 (691)
+++|++|++++|.+.+..+..+.. +.+ +..+++++|.++...+..+... +|+.|++++|.+. ...+..+
T Consensus 152 l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~ 225 (606)
T 3vq2_A 152 LTNLVHVDLSYNYIQTITVNDLQF-----LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCL 225 (606)
T ss_dssp CTTCCEEECCSSCCCEECTTTTHH-----HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHH
T ss_pred CCCCCEEECCCCCCEECCHHHHHH-----HHCCCCCCCEEECCCCCCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHH
T ss_conf 677778876688531057334121-----20342002430046897532571105676-043352467856166778886
Q ss_pred CCCCCCCEEEC---------------------------------CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCH
Q ss_conf 79999988985---------------------------------388465668623549999969985585133455300
Q 005542 273 GNSTRLSFLDV---------------------------------RNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEY 319 (691)
Q Consensus 273 ~~l~~L~~L~L---------------------------------~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 319 (691)
..++.++.+.+ ..+.+.+..+. +..+++|+.+++++|.+.. .+..
T Consensus 226 ~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~~l 303 (606)
T 3vq2_A 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LEDV 303 (606)
T ss_dssp HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHH-HHHC
T ss_conf 0266565231411110367741026817766665434745012366555543222-3548878987714766044-3543
Q ss_pred HHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CHHHCCCCCC
Q ss_conf 00158876984278433348723237887359986698255879935639897429994489887674--3221299996
Q 005542 320 LGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETF--PHWLDVLPEL 397 (691)
Q Consensus 320 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L 397 (691)
....+|+.|++++|.+ +.+| .+ .+++|+.|++++|...+.. .+..+++|+.|++++|.+++.. +..+..+++|
T Consensus 304 ~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp CTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred CCCCCCCEEECCCCCC-CCCC-CC-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC
T ss_conf 3401177897646667-6546-67-8875564454478685310--0024898887977587368775201221467755
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 39990167376768998987799986399867875856789676620122321358863100012356653101588731
Q 005542 398 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMK 477 (691)
Q Consensus 398 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~l~~~~~~~~~l~~l~~~~~~~~~~~~~ 477 (691)
++|++++|.+.+.. ..+ ..+++|+.|++++|.+.+..|...+..++.++.++...+.+....
T Consensus 379 ~~L~L~~n~l~~~~-~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------- 440 (606)
T 3vq2_A 379 RHLDLSFNGAIIMS-ANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--------------- 440 (606)
T ss_dssp CEEECCSCSEEEEC-CCC--TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC---------------
T ss_pred CEEECCCCCCCCCH-HHC--CCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC---------------
T ss_conf 48678899530005-540--688888965898870587537645646213788989689787433---------------
Q ss_pred CCCHHHHHHCCCCCEEECCCCCCCC-CCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 7702343202651389953771542-277544414777621022521445766002289999988699985887585023
Q 005542 478 GNDIQMERILTTFATIDLSSNRFQG-EISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQL 556 (691)
Q Consensus 478 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 556 (691)
......+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..+
T Consensus 441 ---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 441 ---DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp ---TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred ---HHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHC
T ss_conf ---55534778789898989837985467760457889989898885776486561546468989898995787487770
Q ss_pred CCCCCCCEEECCCCEEECCCCCC-CCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 28999999975178200049999-9988-6477644788899899998
Q 005542 557 ASLNYLSVLNLSNNQLEGPIPGG-PQFN-TFGIDSYSGNVGLCGFPLS 602 (691)
Q Consensus 557 ~~l~~L~~L~ls~n~l~~~~p~~-~~~~-~~~~~~~~~n~~lcg~~~~ 602 (691)
..+++|+.|++++|+++ .+|.. ..+. .+....+.+|+..|+++..
T Consensus 518 ~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 68876898889898376-668767521021748876289866477648
Done!