Query 005543
Match_columns 691
No_of_seqs 461 out of 2460
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 01:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00178 sulfite reductase 100.0 1E-139 2E-144 1199.0 62.0 593 44-639 28-620 (623)
2 TIGR02042 sir ferredoxin-sulfi 100.0 1E-130 3E-135 1119.2 58.0 565 69-635 4-577 (577)
3 KOG0560 Sulfite reductase (fer 100.0 9E-128 2E-132 1013.6 37.3 601 20-637 26-635 (638)
4 PRK13504 sulfite reductase sub 100.0 7E-119 1E-123 1027.0 56.0 543 68-633 8-563 (569)
5 TIGR02041 CysI sulfite reducta 100.0 6E-111 1E-115 955.8 53.3 528 75-626 1-541 (541)
6 PRK09567 nirA ferredoxin-nitri 100.0 3E-107 7E-112 931.4 54.3 503 67-635 61-589 (593)
7 COG0155 CysI Sulfite reductase 100.0 2E-102 3E-107 866.6 42.2 491 70-624 6-501 (510)
8 PLN02431 ferredoxin--nitrite r 100.0 2.4E-98 5E-103 853.0 52.6 481 69-608 73-584 (587)
9 PRK09566 nirA ferredoxin-nitri 100.0 6.2E-95 1.3E-99 820.8 49.5 483 68-610 9-510 (513)
10 TIGR02435 CobG precorrin-3B sy 100.0 3.6E-75 7.8E-80 639.6 40.0 366 127-568 17-390 (390)
11 PRK14989 nitrite reductase sub 100.0 7.8E-46 1.7E-50 440.1 26.5 298 371-689 492-814 (847)
12 TIGR02374 nitri_red_nirB nitri 100.0 1.5E-42 3.2E-47 411.7 25.4 281 372-673 482-785 (785)
13 TIGR02066 dsrB sulfite reducta 100.0 2.9E-41 6.2E-46 362.6 18.4 233 104-393 6-313 (341)
14 COG2221 DsrA Dissimilatory sul 100.0 7.5E-38 1.6E-42 323.4 22.1 223 110-396 20-296 (317)
15 PRK09566 nirA ferredoxin-nitri 100.0 2.7E-37 5.9E-42 350.5 26.9 272 411-684 51-377 (513)
16 TIGR02066 dsrB sulfite reducta 100.0 6E-38 1.3E-42 336.9 19.2 210 420-634 27-313 (341)
17 TIGR02374 nitri_red_nirB nitri 100.0 1.7E-37 3.6E-42 368.6 23.3 206 123-393 549-756 (785)
18 COG2221 DsrA Dissimilatory sul 100.0 3.5E-37 7.5E-42 318.5 21.4 219 412-637 18-296 (317)
19 TIGR02912 sulfite_red_C sulfit 100.0 1.6E-37 3.4E-42 332.4 19.4 228 104-393 4-298 (314)
20 TIGR02064 dsrA sulfite reducta 100.0 8.1E-37 1.8E-41 333.1 20.9 269 71-391 10-366 (402)
21 PLN02431 ferredoxin--nitrite r 100.0 5.3E-36 1.1E-40 342.1 26.1 272 411-684 121-451 (587)
22 PRK14989 nitrite reductase sub 100.0 1.8E-36 3.9E-41 360.3 22.5 206 123-393 560-770 (847)
23 PRK13504 sulfite reductase sub 100.0 7.1E-36 1.5E-40 342.6 26.1 267 411-681 48-409 (569)
24 TIGR02435 CobG precorrin-3B sy 100.0 3E-35 6.5E-40 323.6 26.1 255 419-685 14-313 (390)
25 PRK09567 nirA ferredoxin-nitri 100.0 1.1E-34 2.5E-39 333.1 27.4 271 411-685 102-431 (593)
26 TIGR02041 CysI sulfite reducta 100.0 2.2E-34 4.8E-39 328.3 27.4 254 423-678 61-390 (541)
27 TIGR02064 dsrA sulfite reducta 100.0 1.5E-34 3.3E-39 315.3 20.3 207 422-632 80-366 (402)
28 PLN00178 sulfite reductase 100.0 9.3E-34 2E-38 325.6 26.8 269 411-683 89-462 (623)
29 TIGR02042 sir ferredoxin-sulfi 100.0 2.5E-33 5.4E-38 320.6 25.8 267 411-679 42-417 (577)
30 COG1251 NirB NAD(P)H-nitrite r 100.0 7.9E-33 1.7E-37 310.6 15.9 281 371-675 482-786 (793)
31 TIGR02912 sulfite_red_C sulfit 100.0 3E-32 6.6E-37 291.7 19.2 214 414-635 10-299 (314)
32 COG0155 CysI Sulfite reductase 100.0 5E-30 1.1E-34 286.4 23.5 271 411-685 44-363 (510)
33 PF01077 NIR_SIR: Nitrite and 100.0 2.5E-29 5.4E-34 243.0 9.0 153 195-399 1-157 (157)
34 PF01077 NIR_SIR: Nitrite and 100.0 1.1E-28 2.4E-33 238.4 10.8 144 491-637 2-154 (157)
35 COG1251 NirB NAD(P)H-nitrite r 99.9 5.3E-24 1.2E-28 239.8 15.0 204 123-392 548-753 (793)
36 KOG0560 Sulfite reductase (fer 99.9 1.9E-21 4.1E-26 207.6 16.1 269 412-683 118-478 (638)
37 PF03460 NIR_SIR_ferr: Nitrite 99.6 4.8E-16 1E-20 129.5 6.5 59 126-184 8-66 (69)
38 PF03460 NIR_SIR_ferr: Nitrite 99.5 4E-14 8.6E-19 118.0 6.4 66 417-482 1-69 (69)
39 PRK00366 ispG 4-hydroxy-3-meth 99.4 2.3E-12 5.1E-17 136.4 14.2 156 409-607 201-358 (360)
40 PRK00366 ispG 4-hydroxy-3-meth 98.4 1.5E-06 3.3E-11 92.7 11.0 109 175-361 247-356 (360)
41 TIGR00612 ispG_gcpE 1-hydroxy- 98.4 2.4E-06 5.1E-11 90.6 12.2 151 409-601 192-344 (346)
42 COG0821 gcpE 1-hydroxy-2-methy 98.3 7.4E-06 1.6E-10 86.3 14.3 161 409-611 194-356 (361)
43 PF04551 GcpE: GcpE protein; 98.3 1.3E-06 2.9E-11 93.3 7.9 155 410-605 202-358 (359)
44 PLN02925 4-hydroxy-3-methylbut 97.5 0.00027 5.9E-09 81.4 9.3 109 474-611 617-726 (733)
45 PRK00694 4-hydroxy-3-methylbut 97.1 0.0012 2.5E-08 74.9 8.1 108 475-611 494-602 (606)
46 PRK02048 4-hydroxy-3-methylbut 96.8 0.002 4.4E-08 73.5 6.8 102 476-603 503-605 (611)
47 PF04551 GcpE: GcpE protein; 94.9 0.065 1.4E-06 58.0 7.3 113 171-360 243-357 (359)
48 cd01916 ACS_1 Acetyl-CoA synth 93.8 0.059 1.3E-06 63.9 4.3 45 145-190 278-322 (731)
49 TIGR00612 ispG_gcpE 1-hydroxy- 92.5 0.62 1.4E-05 50.2 9.3 107 174-357 237-344 (346)
50 PLN02925 4-hydroxy-3-methylbut 92.3 3.3 7.1E-05 48.9 15.3 117 170-366 607-725 (733)
51 COG0821 gcpE 1-hydroxy-2-methy 90.7 2.2 4.8E-05 46.0 10.9 94 200-364 259-353 (361)
52 PF01402 RHH_1: Ribbon-helix-h 87.6 0.99 2.1E-05 32.8 4.1 34 651-684 6-39 (39)
53 PRK00941 acetyl-CoA decarbonyl 86.2 0.79 1.7E-05 54.8 4.5 43 146-189 316-358 (781)
54 cd01916 ACS_1 Acetyl-CoA synth 84.3 1.1 2.3E-05 53.6 4.4 44 442-485 279-323 (731)
55 PF12651 RHH_3: Ribbon-helix-h 83.0 2.3 5.1E-05 32.2 4.3 35 650-684 8-42 (44)
56 PRK00694 4-hydroxy-3-methylbut 82.9 4.4 9.4E-05 46.8 8.3 92 200-366 508-601 (606)
57 PRK02048 4-hydroxy-3-methylbut 79.0 6.7 0.00015 45.6 8.2 91 201-366 517-609 (611)
58 PHA01623 hypothetical protein 75.8 4.6 9.9E-05 32.4 4.1 36 650-685 19-54 (56)
59 PF09274 ParG: ParG; InterPro 73.2 2.7 5.9E-05 35.7 2.3 42 644-685 34-75 (76)
60 COG4226 HicB Predicted nucleas 66.8 17 0.00036 33.1 6.0 40 643-684 71-110 (111)
61 PRK00941 acetyl-CoA decarbonyl 66.4 7.3 0.00016 46.9 4.8 43 442-484 316-359 (781)
62 PHA00617 ribbon-helix-helix do 64.5 11 0.00023 32.6 4.2 34 651-684 46-79 (80)
63 PF05534 HicB: HicB family; I 58.0 11 0.00023 29.7 2.8 33 644-678 19-51 (51)
64 COG4273 Uncharacterized conser 52.4 10 0.00023 35.3 2.2 59 539-605 69-127 (135)
65 PRK11675 LexA regulated protei 47.6 24 0.00053 31.1 3.7 33 651-683 57-89 (90)
66 PHA01748 hypothetical protein 47.4 35 0.00076 27.7 4.4 35 651-685 9-43 (60)
67 PF03869 Arc: Arc-like DNA bin 43.1 41 0.0009 26.2 4.0 36 647-684 9-44 (50)
68 COG4273 Uncharacterized conser 42.8 28 0.00061 32.5 3.4 63 285-367 71-133 (135)
69 PF12321 DUF3634: Protein of u 40.6 48 0.001 30.3 4.6 53 131-184 34-88 (108)
70 PF07845 DUF1636: Protein of u 38.7 1E+02 0.0022 28.6 6.5 76 515-610 19-94 (116)
71 PRK07539 NADH dehydrogenase su 37.1 2.1E+02 0.0045 27.6 8.8 92 433-554 36-129 (154)
72 COG4710 Predicted DNA-binding 34.5 69 0.0015 27.0 4.2 38 647-686 10-47 (80)
73 PF07764 Omega_Repress: Omega 31.2 76 0.0017 25.9 3.8 39 645-685 28-66 (71)
74 PRK05988 formate dehydrogenase 26.5 4E+02 0.0086 25.9 8.7 116 433-601 37-154 (156)
75 TIGR01958 nuoE_fam NADH-quinon 26.1 4.1E+02 0.0089 25.3 8.7 92 433-554 30-123 (148)
76 COG0173 AspS Aspartyl-tRNA syn 25.8 3E+02 0.0065 32.2 8.8 129 342-486 239-386 (585)
77 PF06183 DinI: DinI-like famil 25.7 1E+02 0.0023 25.5 3.9 51 431-481 2-55 (65)
78 PF08859 DGC: DGC domain; Int 25.4 31 0.00068 31.4 0.8 56 539-602 53-108 (110)
79 cd03063 TRX_Fd_FDH_beta TRX-li 25.2 3.5E+02 0.0076 23.9 7.4 77 497-603 3-79 (92)
80 PF08774 VRR_NUC: VRR-NUC doma 24.4 1.1E+02 0.0025 26.8 4.2 43 410-453 48-92 (100)
81 cd03064 TRX_Fd_NuoE TRX-like [ 22.3 4.3E+02 0.0094 22.0 7.3 75 496-600 3-79 (80)
82 PF05509 TraY: TraY domain; I 22.1 1.8E+02 0.004 22.7 4.4 38 648-687 4-41 (49)
83 PF07704 PSK_trans_fac: Rv0623 22.1 1.8E+02 0.0038 25.1 4.8 39 649-687 3-42 (82)
84 COG1168 MalY Bifunctional PLP- 21.3 1.1E+02 0.0023 34.2 4.0 41 426-466 165-207 (388)
85 COG4384 Mu-like prophage prote 21.0 1.1E+02 0.0023 30.7 3.5 46 458-506 34-79 (203)
86 PF07071 DUF1341: Protein of u 20.7 3.9E+02 0.0084 27.3 7.4 58 422-486 148-205 (218)
87 PF08774 VRR_NUC: VRR-NUC doma 20.6 1.3E+02 0.0027 26.4 3.8 27 127-153 63-89 (100)
No 1
>PLN00178 sulfite reductase
Probab=100.00 E-value=1.1e-139 Score=1198.98 Aligned_cols=593 Identities=80% Similarity=1.288 Sum_probs=563.8
Q ss_pred CCCccccchhhccCCCCCCcccccCCCCChhhhhhhhcCCCccchHHhhhhcCCCCChhHHHhhhhceeEeeccCCccCC
Q 005543 44 PYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGA 123 (691)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~E~~K~~~~~l~~~~~~~~~~~~~~~~~~~~~~~K~~G~y~q~~rd~r~~ 123 (691)
+.+++.+++.||++|++++++. .+|+||+|+||++||+|+++++++|++..+++++++.+++||||+|+|+|||.|.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~--~~k~~~~E~~K~~s~~l~~~~~~~l~~~~~~~~~~d~~~~K~~G~y~q~~r~~r~~ 105 (623)
T PLN00178 28 RSRSGRLVIRAVATPVKKPTTE--PPKRSKVEIIKENSNFLRHPLNEELATEAPNINEDAVQLIKFHGSYQQDNREKRGG 105 (623)
T ss_pred cccCCCcceeeeecCCCCcccc--cCCCCHHHHHhhhcCCCcchHHHHHHhccCCCChhHHhHhheeeeeeecCccccCC
Confidence 3333457899999999988764 67999999999999999999999999888899999999999999999999999999
Q ss_pred ccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCccee
Q 005543 124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVL 203 (691)
Q Consensus 124 ~~~~fmlRir~pgG~lt~~ql~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g~t~~a~GD~~RNV~ 203 (691)
++|+||||+|+|+|++|++||++|++||++||+|++|||||||||||||.++|+++++++|.+.+++|.++|||++||||
T Consensus 106 ~~~~fMlRvriPgG~lt~~Q~~~la~iA~~yg~g~l~lTTRq~iQlhgI~~~dl~~i~~~L~~~gl~t~~a~gD~~RNV~ 185 (623)
T PLN00178 106 KAYQFMLRTKQPAGKVPNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGVLKKDLKTVMSSIIKNMGSTLGACGDVNRNVL 185 (623)
T ss_pred cCcceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEecccceEEcCCCHHHHHHHHHHHHHcCCCcccccCCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999994455699999999999999
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCCCce
Q 005543 204 APPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKF 283 (691)
Q Consensus 204 a~p~~~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKf 283 (691)
+||+|++..++.|++++|.+|+++|+|+|++|+|+|||++++.+.++++++++++++.++++|.+++||+||..+|||||
T Consensus 186 ~~p~p~~~~e~~d~~~~a~~l~~~l~p~t~~y~e~~ld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ep~yg~~~LPRKF 265 (623)
T PLN00178 186 APAAPFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARNDNSHGTNFEDSPEPIYGTQFLPRKF 265 (623)
T ss_pred cCCCcCCchhhhhHHHHHHHHHHhhcccccchhhhhcccccccccccchhhhhhhcccccccccCCccccccccCCCCCe
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHH
Q 005543 284 KVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRE 363 (691)
Q Consensus 284 Ki~isg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~~~~rd 363 (691)
||+|+||++||+++++|||||+++.+++|+..||+|+||||||++|+++.|||++|+.++||++||+++++++|+++|+|
T Consensus 266 Kiavsg~~~n~~~~~~nDiG~~a~~~~~g~~~Gf~v~vGGg~g~~~~~~~t~pr~a~~l~~v~~e~v~~v~~av~~~~rd 345 (623)
T PLN00178 266 KIAVTVPGDNSVDILTNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLGYVPKEDILYAVKAIVATQRD 345 (623)
T ss_pred EEEEecCccccccccccceEEEEEEeCCCcEeeEEEEEECccccCCCccCCCCccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987657667999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcchhhhHHHHHHhhChhHHHHHHHHHhCCCCCCCCCCCccccccccceEeecCCcEEEEEEeCCCCCCHHHHHHH
Q 005543 364 NGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTL 443 (691)
Q Consensus 364 ~G~R~~R~~aRlk~li~~~G~e~f~e~le~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~i~vp~Grita~ql~~L 443 (691)
||+|+||+++||||+|++||+++|+++|++++|+++++..+.+++...+|+|||+|+||.|++++++|+|+|+++|++.|
T Consensus 346 ~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~~g~~~~~~~~~~~~~~~d~~G~~~q~dG~~~v~l~vp~Grit~~~l~~L 425 (623)
T PLN00178 346 YGRRDDRKQSRMKYLVHSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSYLGWHEQGDGKLFYGVHVDNGRIKGEAKKAL 425 (623)
T ss_pred hCcccchhhhHHHHHHHHHCHHHHHHHHHHHhcccccCCCCccccccccceeEEEccCCcEEEEEecCCeecCHHHHHHH
Confidence 99999999999999999999999999999999999988777777888999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHH
Q 005543 444 REIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKR 523 (691)
Q Consensus 444 A~iAe~yg~~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~ 523 (691)
++||++||.+||+|++|||+|+||+++++++|++.|+++|+......++.+++++||+|+++|++|++||+++++.|.++
T Consensus 426 a~iAe~yg~~iRlT~~Qnlil~~I~~~~~~~i~~~L~~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~ 505 (623)
T PLN00178 426 REVIEKYNLPVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDILKR 505 (623)
T ss_pred HHHHHHhCCcEEEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHH
Confidence 99999999899999999999999999999999999999999876567899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecCceEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHH
Q 005543 524 IRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFY 603 (691)
Q Consensus 524 l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~ 603 (691)
++..+.+.+++.+.+|+||||||||+|++|+++||||+|.+.++|+||+||+.+++++|+.+...|+.+++++++++++.
T Consensus 506 l~~~~~~~~l~~~~~i~I~vSGCpNgCarp~iaDIGlvG~~~~~Y~I~lGG~~~~~~la~~~~~~V~~eei~~~le~ll~ 585 (623)
T PLN00178 506 VRAMFNKVGLKYDESVVVRMTGCPNGCARPYMAELGFVGDGPNSYQIWLGGTPNQTRLAEPFMDKVKVDDLEKVLEPLFY 585 (623)
T ss_pred HHHHHhhcCCCCCCceEEEEeCCCccccccccCcEEEEcCCCCeEEEEECCCCCcccccchhhcCcCHHHHHHHHHHHHH
Confidence 99888888887679999999999999999999999999987789999999987688999999999999999999999999
Q ss_pred HHHHhcccCCCcHhHHHHhhCHHHHHHHHHhHcCCc
Q 005543 604 YWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPA 639 (691)
Q Consensus 604 ~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~~~ 639 (691)
+|++++++ +|+|++|++|+|+++|++.+..+.+..
T Consensus 586 ~y~~~r~~-~E~f~df~~R~G~e~~~~~~~~~~~~~ 620 (623)
T PLN00178 586 MWKQQRQE-KESFGDFTNRVGFEALKEYIESYAGSV 620 (623)
T ss_pred HHHHhCcC-CCCHHHHHHHcCcHHHHHHHHHhcCCc
Confidence 99999998 999999999999999999999887643
No 2
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=1.3e-130 Score=1119.21 Aligned_cols=565 Identities=70% Similarity=1.171 Sum_probs=531.0
Q ss_pred CCCChhhhhhhhcCCCccchHHhhhhcCCCCChhHHHhhhhceeEeeccCCccC---CccceEEEEEecCCCccCHHHHH
Q 005543 69 TKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERG---AKSYSFMLRTKNPCGKVSNQLYL 145 (691)
Q Consensus 69 ~k~~~~E~~K~~~~~l~~~~~~~~~~~~~~~~~~~~~~~K~~G~y~q~~rd~r~---~~~~~fmlRir~pgG~lt~~ql~ 145 (691)
.|+||+|+||.+|++||++|.++|.+..++++++|.++|||||+|+|+|||.|. +++|+||+|+|+|+|+||++||+
T Consensus 4 ~~~~~~e~~k~~s~~l~~~~~~~l~~~~~~~~~~d~~~lK~~G~y~q~~r~~r~~~~~~~~~fM~RiriPgG~lt~~q~~ 83 (577)
T TIGR02042 4 QKRSKVEILKERSNFLREPLNEQLLEEATHFNEDAVQILKFHGSYQQDNRDNRGKGQEKDYQFMLRTKNPGGYVPPQLYL 83 (577)
T ss_pred CCCChHHHHhhhcccccCcHHHHhhccccCCChhHHHHHhheeeeeecCccccccccCccceEEEEEecCCcccCHHHHH
Confidence 479999999999999999999999998889999999999999999999999875 67899999999999999999999
Q ss_pred HHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCchh-hhHHHHHHHHHH
Q 005543 146 TMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRK-DYLFAQKTAENI 224 (691)
Q Consensus 146 ~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g~t~~a~GD~~RNV~a~p~~~~~~-~~~d~~~la~~i 224 (691)
.|++||++||+|++|||||||||||||.++|+++++++|.+.+++|.++|||++||||+||+++|.. ++.+++++|++|
T Consensus 84 ~ia~ia~~yg~g~~~iTtRq~iql~gi~~~~~~~~~~~l~~~~l~t~~a~gd~~RNV~~~P~~~~~~~~~~~~~~~a~~i 163 (577)
T TIGR02042 84 TLDDLADEYGNGTLRATTRQTFQLHGILKKNLKTVISTIVKNLGSTLGACGDLNRNVMAPPAPFRKRPEYEFAREYADNI 163 (577)
T ss_pred HHHHHHHHhCCCcEEEEcccceEeCCCCHHHHHHHHHHHHHhCCCceeccCCCCCCeecCCCccccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999995555689999999999999999998876 899999999999
Q ss_pred HHhhCCCccccccccccccccccCC-ChhhhhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCccCccCCEE
Q 005543 225 AALLTPQSGFYYDMWVDGEQIMTAE-PPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIG 303 (691)
Q Consensus 225 ~~~l~p~~~ay~~~~~d~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c~~~~~~DIg 303 (691)
+++|+|+||||+|||||++++++.+ .+.+..+++++.+|+.+..++||+|+..+|||||||+|++|++||+++++||||
T Consensus 164 ~~~~~p~t~a~~e~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPRKFKi~vsg~~~~~~~~~~nDlg 243 (577)
T TIGR02042 164 ADLLTPQSGAYYELWLDGEKVMSAEPDPEVVAARNDNSHGTNFADSPEPLYGTQYLPRKFKIAVTVPGDNSIDLFTQDIG 243 (577)
T ss_pred HHhhcccccchhheecccccccccccchhhhhhhhcccccccccCCccccccccCCCCCceEEEEcCCCCcccceecceE
Confidence 9999999999999999999999874 466777788777777776678999988999999999999999999999999999
Q ss_pred EEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhC
Q 005543 304 VVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWG 383 (691)
Q Consensus 304 ~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G 383 (691)
|+++.+++|+..||+|+||||||++|+++.|||++|+.++||++|+++++++||+++|+|||+|+||+++||||+|++||
T Consensus 244 f~a~~~~~g~~~Gf~v~vGGglg~~~~~~~t~p~~a~~l~~v~~e~v~~~~~av~~~~rd~G~R~nR~~aRlk~li~~~G 323 (577)
T TIGR02042 244 LVVVSNERGELEGFNIYVGGGMGRTHNKEETFARLADPLGYVPKEDIYYAVKAIVATQRDYGDRDDRRHARMKYLISDWG 323 (577)
T ss_pred EEEEEeCCCcEeeEEEEEecccCCCCCCccccchhccccCcCCHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHC
Confidence 99998765666799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCCccccccccceEeecCCcEEEEEEeCCCCCCHH----HHHHHHHHHHHhCCeEEEcCC
Q 005543 384 IEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITPN 459 (691)
Q Consensus 384 ~e~f~e~le~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~i~vp~Grita~----ql~~LA~iAe~yg~~irlT~~ 459 (691)
+++|+++|++++|+.+++..+.+.+...||+||++|+||.|++++++|+|+|+++ +++.|++||++||..+|||++
T Consensus 324 ~e~f~~~ve~~~~~~~~~~~~~~~~~~~d~~G~~~q~dG~~~v~l~vp~Grl~~~~~~~l~~~LaeIA~~yg~~irlT~~ 403 (577)
T TIGR02042 324 IEKFREVVEQYFGKKIAPVRELPEFEYKDYLGWHEQGDGKWFLGLHIDSGRVKDDGNWQLKKALREIVEKYNLPVRLTPN 403 (577)
T ss_pred HHHHHHHHHHHhccccCCcccCCcccccccceEEECCCceEEEEEEecCceecCCchHHHHHHHHHHHHHhCCCEEEcCC
Confidence 9999999999999988887777777788999999999999999999999999995 458999999999999999999
Q ss_pred CcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCce
Q 005543 460 QNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESV 539 (691)
Q Consensus 460 Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~ 539 (691)
|||+|+||+++++++|++.|++.||....+.++.+++++||||+++|+++++||++.++.+.+.++.++++.+++ |+++
T Consensus 404 Qnl~l~~V~~~~~~~i~~~L~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~l~~l~~~~~l~-~~~i 482 (577)
T TIGR02042 404 QNIILYDIQPEWKRAITTVLAQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRALLEKVGLP-DEHF 482 (577)
T ss_pred CCeEECCCCHHHHHHHHHHHHhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHHHHHHHHhcCCC-CCCc
Confidence 999999999999999999999999987666789999999999999999999999999998988898888877774 5889
Q ss_pred EEEEEcCCCCCCCcccccEEEEeecCceEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHHHHHHhcccCCCcHhHH
Q 005543 540 VIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDF 619 (691)
Q Consensus 540 kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~ 619 (691)
+||||||||+|++|+++||||+|.+.++|+||+||+.+++++|+.+...|+.++++++++.++++|++++++ +|+|++|
T Consensus 483 ~I~vSGCpn~Ca~p~iaDIG~vG~~~~~y~l~lGG~~~~~rla~~~~~~vp~~ei~~vl~~ll~~y~~~r~~-~E~f~~f 561 (577)
T TIGR02042 483 VVRMTGCPNGCARPYMAELGFVGSAPNSYQVWLGGSPNQTRLARPFIDKLKDGDLEKVLEPLFVHFKQSRQS-GESFGDF 561 (577)
T ss_pred EEEEECCCccccCCCcCcEEEECCCCCcEEEEECCCCCcccchhHHhcCcCHHHHHHHHHHHHHHHHHhccC-CCCHHHH
Confidence 999999999999999999999998777899999998877889999999999999999999999999999988 9999999
Q ss_pred HHhhCHHHHHHHHHhH
Q 005543 620 TNRMGFEKLQELVEKW 635 (691)
Q Consensus 620 i~R~G~e~~~~~l~~~ 635 (691)
++|+|+++|++.+++|
T Consensus 562 i~R~G~e~~~~~l~~~ 577 (577)
T TIGR02042 562 CDRVGFDALREFVESY 577 (577)
T ss_pred HHHcCcHHHHHHHhcC
Confidence 9999999999998764
No 3
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-128 Score=1013.59 Aligned_cols=601 Identities=46% Similarity=0.765 Sum_probs=547.3
Q ss_pred cccccccccccccccc--cc-cccccCCCCccc--cchhhccCCCCCCcccccCCCCChhhhhhhhcCCCccchHHhhhh
Q 005543 20 IRSFNGLKPSHSLSIR--TN-LRAFPVPYASRS--SVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLT 94 (691)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~~E~~K~~~~~l~~~~~~~~~~ 94 (691)
+.-+.-++..+.+.+| +. .+..|..+.+.. -+.+++.++..|.+.. ++|++++|.||++||+||+++.|++.+
T Consensus 26 l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~~p~d~d--~~kr~~~e~ike~snflr~~iseelld 103 (638)
T KOG0560|consen 26 LVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGINPQDKD--EPKRETNEDIKENSNFLRGTISEELLD 103 (638)
T ss_pred HHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCCCccccc--cCCcccHHHHHhhcchhhcccchhhhh
Confidence 5566667777777776 22 222222222122 3488999999988644 689999999999999999999999988
Q ss_pred cC-CCCChhHHHhhhhceeEeeccCCccCCccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCC
Q 005543 95 DA-PNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVL 173 (691)
Q Consensus 95 ~~-~~~~~~~~~~~K~~G~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql~~la~iA~~yG~g~l~lTtRQ~iQl~gI~ 173 (691)
.. .+.++.+.|++||||+|+|+|||.|.++.|+||+|.|+|+|+.|++||++|++|+++||||+++|||||++|+|||.
T Consensus 104 es~~~v~esdvqL~KfhGiy~qddRd~r~gr~y~FM~R~klP~Gvtt~qq~l~lddls~k~G~gtlklTTRqtfQihGVl 183 (638)
T KOG0560|consen 104 ESKGSVDESDVQLIKFHGIYHQDDRDIRYGRSYSFMMRAKLPNGVTTPQQWLALDDLSDKYGNGTLKLTTRQTFQIHGVL 183 (638)
T ss_pred cCcCCcchhHHHHHHHhhhhhhcchhhhcchhhhhhheecCCCCCCCHHHHHHHHHHHHhhCCceeeeeeeceeeeeeee
Confidence 75 46999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhh
Q 005543 174 KKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEV 253 (691)
Q Consensus 174 ~~~l~~v~~~L~~~~g~t~~a~GD~~RNV~a~p~~~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~ 253 (691)
+.|++++++.|++.+++|+++|||++||||++.+|.....+.+..+.++.|+++|.|+|++|||+|++|+++.
T Consensus 184 kknlk~~lrgi~kv~ltTL~a~gD~~RNv~~sa~P~~~kd~~qi~dt~k~is~~llP~T~~y~e~w~e~~q~v------- 256 (638)
T KOG0560|consen 184 KKNLKETLRGIAKVGLTTLGACGDVNRNVVGSANPINGKDHEQIVDTAKNISALLLPYTNLYHEFWTEGPQVV------- 256 (638)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhccccccccccCCCccccCHHHHHHHHHHHhhhhCCccchHHHHhhcCcHHh-------
Confidence 9999999999966667999999999999999988988888999999999999999999999999999987643
Q ss_pred hhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCccc
Q 005543 254 VKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET 333 (691)
Q Consensus 254 ~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~ 333 (691)
.+|+ .+|+++-++ |||||.+|||||||++|+++|+|.+|+++||||+|++.+. +...||||+||||||++|++++
T Consensus 257 -e~rk--v~Gn~~~d~-epiygptyLPRKfkv~Vavp~dn~vd~~tnDva~v~i~en-d~~~GfNv~VGGgmgtthr~ek 331 (638)
T KOG0560|consen 257 -EARK--VHGNADVDN-EPIYGPTYLPRKFKVCVAVPPDNDVDVLTNDVALVAINEN-DGVFGFNVLVGGGMGTTHRNEK 331 (638)
T ss_pred -hhhc--cCCCccccc-ccccCcccCccceeEEEecCCCccccccccceeEEEEecc-CCceeeEEEeccccCCcccchh
Confidence 4454 678888777 9999999999999999999999999999999999999954 5668999999999999999999
Q ss_pred ccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhChhHHHHHHHHHhCCCCCCCC--CCCccccc
Q 005543 334 TFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFR--QLPEWEFK 411 (691)
Q Consensus 334 t~p~~a~~l~~v~~e~v~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G~e~f~e~le~~~g~~l~~~~--~~~~~~~~ 411 (691)
|+||+|..+|||+.|+|+++++||+.+|||+|+|+||+++||||+|+.||++.|+++||+|+|++|+|.+ +.+.|++.
T Consensus 332 t~prla~~~gyVptddIl~~vkaIli~qRd~G~R~nRk~aRmkylid~lGVe~Fr~~VEe~~g~KfE~~r~~~~~~we~~ 411 (638)
T KOG0560|consen 332 TYPRLAELDGYVPTDDILPLVKAILIVQRDHGDRGNRKHARMKYLIDELGVEGFRTKVEEYMGKKFEPGRSEPNKQWERR 411 (638)
T ss_pred hcccccccccccchhhhHHHhhhheeeehhccCccchhhhhhhhhHHhhhhHHHHHHHHHHhcccCCcCcCCcchhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 66789999
Q ss_pred cccceEeecCCcEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCeEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCC
Q 005543 412 SHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYV 490 (691)
Q Consensus 412 d~~G~~~q~dG~~~v~i~vp~Grita~ql~~-LA~iAe~yg~~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~ 490 (691)
||+|||+|++|.++++++|++||+.+.+++. |+++++++..++|||++|||+|+||..++...|.+.|...++.... .
T Consensus 412 dyfGwh~q~~gl~f~glhVe~GRve~l~~ktglRev~e~~~~e~rlT~nQniii~nv~te~~~~i~~~la~~~l~npe-f 490 (638)
T KOG0560|consen 412 DYFGWHKQEEGLSFVGLHVENGRVEALDMKTGLREVAEYGSGELRLTVNQNIIIPNVETEKTEAILQELALYKLDNPE-F 490 (638)
T ss_pred cccccccCCCCceEEEEEccccccccchhhhHHHHHHHhhcceeeecccccEEecccchhhhHHHHHHHHHhccCCcc-h
Confidence 9999999999999999999999999887777 6666666666899999999999999999999999999999998765 4
Q ss_pred CCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecCceEEE
Q 005543 491 DPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQI 570 (691)
Q Consensus 491 ~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I 570 (691)
+.++..++||+|+++|++|++||++.++.|.+++++.++++|++.| .+.+||+||||+|++||++||||+|.+++.|++
T Consensus 491 s~L~~ss~AC~g~p~CglAi~Eser~lpkii~~ve~~~e~vgl~~d-sIvmr~TGCPNgCsrp~vaeig~vGkapnty~~ 569 (638)
T KOG0560|consen 491 SGLRLSSVACVGLPTCGLAIAESERRLPKIITEVERMFEEVGLPRD-SIVMRMTGCPNGCSRPWVAEIGLVGKAPNTYNL 569 (638)
T ss_pred hhhhhhhhcccCCCcchhHHHHHhhchhHHHHHHHHHHHHhCCCCC-ceEEEeccCCCCCCcchhhheeecccCCcceee
Confidence 5588899999999999999999999999999999999999999765 599999999999999999999999999999999
Q ss_pred EEcCcCCCccchhhhccCCChhhHHHHHHHHHHHHHHhcccCCCcHhHHHHhhCHHHHHHHHHhHcC
Q 005543 571 WLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEG 637 (691)
Q Consensus 571 ~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~ 637 (691)
++||.+...++++++...+...+|.+++++++..|.-++.. +|.|++|+-|+|+++..+...-+.+
T Consensus 570 ~lgG~p~~~~l~k~~~~~vkd~ei~~i~kpl~k~~~Lere~-~E~fgd~~~rvg~ek~~ee~~~heg 635 (638)
T KOG0560|consen 570 MLGGGPVGQRLNKLYGRIVKDSEIGEIYKPLFKRYALEREV-GEHFGDEFIRVGIEKEEEEGDTHEG 635 (638)
T ss_pred ecCCcchHHHHHHHHhccccHHHHHHHHhhhhhhhhhhHHH-HHHHHHHHHhhcceecccccccccc
Confidence 99999988999999999999999999999999999999998 9999999999999988776644443
No 4
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=100.00 E-value=6.8e-119 Score=1026.99 Aligned_cols=543 Identities=45% Similarity=0.778 Sum_probs=500.5
Q ss_pred CCCCChhhhhhhhcCCCccchHHhhhhc-CCCCChhHHHhhhhceeEeeccCCccC-------CccceEEEEEecCCCcc
Q 005543 68 ETKRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERG-------AKSYSFMLRTKNPCGKV 139 (691)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~K~~G~y~q~~rd~r~-------~~~~~fmlRir~pgG~l 139 (691)
.+|+||+|+||.+|++|++++.++|++. .++++++++++|||||+|+|+|||.|. +++|+||+|||+|+|+|
T Consensus 8 ~~~~~~~E~~K~~~~~l~~~i~~~~~~~~~~~~~~~~~~~lk~~G~y~q~~r~~r~~~~~~~~~~~~~fm~RvriP~G~l 87 (569)
T PRK13504 8 EGKLSDVERIKLESNYLRGTIAEELNDGLTGGFSEDDFQLLKFHGSYQQDDRDIRAERAEQKLEPAYQFMLRCRLPGGVI 87 (569)
T ss_pred CCCCChHHHhhccCcCccchHHHHHHhhccCCCCHHHHHHHhheeeeEecchhhhhhhcccccCcCcceEEEEecCCCcc
Confidence 4689999999999999999999989765 679999999999999999999998763 44688999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCCCchhhhHHHH
Q 005543 140 SNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQ 218 (691)
Q Consensus 140 t~~ql~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RNV~a~p~~~~~~~~~d~~ 218 (691)
|++||++|++||++||+|++|||||||||||||+++++++++++| .++| +|.++|||++||||+||+++|..++.|++
T Consensus 88 t~~Ql~~la~la~~yg~G~i~lTtRQniQL~gI~~~~l~~i~~~L-~~~gl~t~~a~gd~~RNV~~~p~~~~~~~~~d~~ 166 (569)
T PRK13504 88 TPQQWLALDKLADEYGNGTLRLTTRQTFQFHGILKKNLKPVIQTI-NSVLLDTLAACGDVNRNVMCTPNPYESRLHAEAY 166 (569)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecccceeecCCchHhHHHHHHHH-HHcCCCcccccCCCCCceecCCCcccccchHHHH
Confidence 999999999999999999999999999999999999999999999 7777 77899999999999999989988999999
Q ss_pred HHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCccCc
Q 005543 219 KTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDIL 298 (691)
Q Consensus 219 ~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c~~~~ 298 (691)
+++.+|.++|.|++.+|+|+|+++++...... ...+|+|+..+|||||||+||||++||++++
T Consensus 167 ~la~~l~~~l~~~~~~y~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~LPrKfKiavsgc~~~c~~~~ 229 (569)
T PRK13504 167 EWAKKISDHLLPRTRAYAEIWLDGEKVATFSG-----------------TEEEPIYGKTYLPRKFKIAVAVPPDNDVDVY 229 (569)
T ss_pred HHHHHHHHHhccccchhHHhhhcCcccccccc-----------------cccCcccccCCCCCceEEEEEcCCccccCce
Confidence 99999999999999999999999876543110 1125678878999999999999999999999
Q ss_pred cCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Q 005543 299 TNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYL 378 (691)
Q Consensus 299 ~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~~~~rd~G~R~~R~~aRlk~l 378 (691)
+|||||+++.++ |+..||+|+||||+|++|++..|+|++|+.++||++|++++++++|+++|++||+|.+|+++||+|+
T Consensus 230 ~~DiG~~~~~~~-g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~G~r~~r~~aRlk~l 308 (569)
T PRK13504 230 ANDLGFVAIAEN-GKLVGFNVLVGGGMGMTHGDKETYPRLADELGYVPPEDVLDVAEAVVTTQRDYGNRTDRKNARLKYT 308 (569)
T ss_pred ecceEEEEEecC-CcEEEEEEEEEccccCCCCCCCCCCccccccCccCHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHH
Confidence 999999999764 6567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhChhHHHHHHHHHhCCCCCCCCCCCccccccccceEeecCCcEEEEEEeCCCCCCHH----HHHHHHHHHHHhCCeE
Q 005543 379 ISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNV 454 (691)
Q Consensus 379 i~~~G~e~f~e~le~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~i~vp~Grita~----ql~~LA~iAe~yg~~i 454 (691)
|++||+++|++++++++|+++++..+.+.+...+|+||++|+||.|+|++++|+|+++++ |++.||+||++|+..|
T Consensus 309 v~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~G~~~v~v~vp~Grl~~~~~~~~l~~La~iA~~yg~~i 388 (569)
T PRK13504 309 LERVGLDWFKAEVERRAGKKLEPARPYEFTGRGDRLGWVEGIDGKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHKGDF 388 (569)
T ss_pred HHHHhHHHHHHHHHHHhcCccCCCCCCCccCccceeEEEecCCCcEEEEEEecCEEecCCCcHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999988776555555677899999999999999999999999999 9999999999999889
Q ss_pred EEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCC
Q 005543 455 RITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLK 534 (691)
Q Consensus 455 rlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~ 534 (691)
|+|++|||+|++|+++++++|++.|+++|+......++.+++++||||+++|++|++||+++++.|.++|++.+...++.
T Consensus 389 rlT~~Qnl~l~~i~~~~~~~l~~~L~~~gl~~~~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~~~~~~l~ 468 (569)
T PRK13504 389 RLTANQNLIIANVPPSDKAKIEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLS 468 (569)
T ss_pred EEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999987655588899999999999999999999999999999998887765552
Q ss_pred CCCceEEEEEcCCCCCCCcccccEEEEeecCceEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHHHHHHhcccCCC
Q 005543 535 YNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDE 614 (691)
Q Consensus 535 ~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~E 614 (691)
|.+++||||||||+|++|+++||||+|...++|+||+||+.+.+++++.+...|+.+++++++++++++|++++.+ +|
T Consensus 469 -~~~i~I~vSGCpn~Ca~~~iaDIG~vG~~~~~y~i~lGG~~~~~~~~~~~~~~v~~~~v~~~l~~ll~~y~~~~~~-~E 546 (569)
T PRK13504 469 -DEHIVIRMTGCPNGCARPYLAEIGLVGKAPGRYNLYLGGSFNGTRLPKMYRENITEEEILATLDPLLGRWAKEREP-GE 546 (569)
T ss_pred -CCceEEEEeCCcccccccccCcEEEEecCCCeEEEEECCCCCCCccchHhhcCCCHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 6889999999999999999999999998778899999999877899999999999999999999999999999998 99
Q ss_pred cHhHHHHhhCHHHHHHHHH
Q 005543 615 SFGDFTNRMGFEKLQELVE 633 (691)
Q Consensus 615 rf~~~i~R~G~e~~~~~l~ 633 (691)
+|++|++|+|+ +++.++
T Consensus 547 ~f~~~~~R~g~--~~~~~~ 563 (569)
T PRK13504 547 GFGDFVIRAGI--IREVLD 563 (569)
T ss_pred CHHHHHHHcch--HHhhhc
Confidence 99999999998 665543
No 5
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=5.7e-111 Score=955.80 Aligned_cols=528 Identities=41% Similarity=0.727 Sum_probs=482.5
Q ss_pred hhhhhhcCCCccchHHhhhhc-CCCCChhHHHhhhhceeEeeccCCccC-------CccceEEEEEecCCCccCHHHHHH
Q 005543 75 EIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERG-------AKSYSFMLRTKNPCGKVSNQLYLT 146 (691)
Q Consensus 75 E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~K~~G~y~q~~rd~r~-------~~~~~fmlRir~pgG~lt~~ql~~ 146 (691)
|+||.+|+||++++.++|++. ..+++++++++|||||+|+|+|||.|. +++|.||||||+|+|+||++||++
T Consensus 1 e~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lk~~G~y~q~~~~~~~~~~~~~~~~~~~fmvRvripgG~lt~~Ql~~ 80 (541)
T TIGR02041 1 ERIKEESNYLRGTLLESLADPLTGGFSGDDFQLIKFHGMYQQDDRDLRAERAEQKLEPAYQFMLRCRLPGGVITPKQWLA 80 (541)
T ss_pred CcchhccccchhHHHHHHhhhhhcCCCHHHHHHHHHheeeeeccccchhhhcccccCCcceeEEEEecCCcEECHHHHHH
Confidence 899999999999999999876 468999999999999999999998664 356789999999999999999999
Q ss_pred HHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCCCchhhhHHHHHHHHHHH
Q 005543 147 MDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIA 225 (691)
Q Consensus 147 la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RNV~a~p~~~~~~~~~d~~~la~~i~ 225 (691)
|++||++||+|++|||||||||||||+++++++++++| .++| +|.++|||++|||+|||.|+|.....++.++|.+|+
T Consensus 81 la~ia~~yg~g~i~lTtRQniQl~gI~~~~l~~v~~~L-~~~GL~t~~a~gd~~RnV~c~~~p~~~~~~~e~~~~a~~l~ 159 (541)
T TIGR02041 81 IDKFAREYGNGSIRLTTRQTFQFHGILKRNLKAVHQAI-HSAGLDSIATCGDVNRNVLCTSNPYESELHQEAYEWAKKIS 159 (541)
T ss_pred HHHHHHHhCCCeEEEecccceEEcCCChhHHHHHHHHH-HHcCCCccccCCCCCCceeCCCCcccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 8888 779999999999997777899888899999999999
Q ss_pred HhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCccCccCCEEEE
Q 005543 226 ALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVV 305 (691)
Q Consensus 226 ~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c~~~~~~DIg~v 305 (691)
++|.|++.+|+++|+++..+... ...+|+|+..+|||||||+||||++||+++++|||||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~LPrKfKi~isg~~~~~~~~~~~DiG~~ 220 (541)
T TIGR02041 160 EHLLPRTRAYHEIWLDEKKVAGT-------------------EEVEPIYGPTYLPRKFKTGVVIPPINDVDVYANDLGFV 220 (541)
T ss_pred HHhccCchhHHHHhhhcccccCC-------------------cccCccccccCCCCCcEEEEECCCCccccccccceEEE
Confidence 99999999999999876554321 01246787778999999999999999999999999999
Q ss_pred EEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhChh
Q 005543 306 VVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE 385 (691)
Q Consensus 306 ~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G~e 385 (691)
++.++ |+..||+|+||||+|++|++..|+|++|..++||++|++++++++|+++|++||+|.+|+++||+|+|++||++
T Consensus 221 a~~~~-g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~g~r~~r~~aRlk~li~~~G~e 299 (541)
T TIGR02041 221 AIADN-GKLIGFNVLIGGGLGMTHGNKATYPRLANEIGFIPPEHTLAVAEAIVTTQRDFGNRTDRKNARTKYTIDRMGLD 299 (541)
T ss_pred EEEeC-CcEEEEEEEEeccccCCCCCcCCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHhCHH
Confidence 99875 55679999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCccccccccceEeecCCcEEEEEEeCCCCCCH----HHHHHHHHHHHHhCCeEEEcCCCc
Q 005543 386 KFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQN 461 (691)
Q Consensus 386 ~f~e~le~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~i~vp~Grita----~ql~~LA~iAe~yg~~irlT~~Qn 461 (691)
+|+++|+++++.++.+..+.......+|+||++|++|.|++++++|+|++++ .+++.|+++|+.|+..||+|++||
T Consensus 300 ~f~~~v~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~G~~~v~v~~p~G~l~~~~~~~~l~~la~iA~~~~~~irlT~~Qn 379 (541)
T TIGR02041 300 TFKAEVERRAGITLEPARPYVFTHRGDRYGWVKGIDGNWHLTLFIESGRIADYPDKPLMTGLREIAKIHKGDFRITPNQN 379 (541)
T ss_pred HHHHHHHHHhCCCCCCCCCccccccccccCeecCCCCcEEEEEEecCceeecCccHHHHHHHHHHHHhcCCeEEEeCCCC
Confidence 9999999998887765544444456789999999999999999999999995 499999999987666899999999
Q ss_pred EEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEE
Q 005543 462 IILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVI 541 (691)
Q Consensus 462 l~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI 541 (691)
|+|+||++++++++.+.|++.|+.++ ..++.+|+++||||+++|++|++||++++..|.++|++.+..+++. |.+++|
T Consensus 380 l~l~~v~~~~~~~l~~~l~~~gl~~~-~~~~~~~~vvAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~~~~~~-~~~~~I 457 (541)
T TIGR02041 380 LIIANVPEGGKAKIEALARQYGLIDG-KVTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKHGLA-DEEIVL 457 (541)
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCCCC-CCCceeeccEECCCccchhhhHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEE
Confidence 99999999999999999999999764 3567789999999999999999999999999999998887766653 678999
Q ss_pred EEEcCCCCCCCcccccEEEEeecCceEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHHHHHHhcccCCCcHhHHHH
Q 005543 542 RVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTN 621 (691)
Q Consensus 542 ~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~ 621 (691)
|||||||+|++|+++||||+|...++|+||+||+.+++++|+.+...|+.++++++|++++++|++++++ +|||++|++
T Consensus 458 ~iSGCpn~Ca~~~~adIG~~G~~~~~y~l~lGG~~~~~~~g~~~~~~v~~~~v~~~v~~ll~~y~~~~~~-~E~f~~~~~ 536 (541)
T TIGR02041 458 RMTGCPNGCGRPYLAEIGLVGKAPGRYNLMLGGNRRGQRLPRLYRENITEPEILAELDELLGRYAAERKP-GEGFGDFLI 536 (541)
T ss_pred EEecCCccccccccCcEEEEEeccceEEEEECCCCCCCchhHHHHcCCCHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHH
Confidence 9999999999999999999998677899999999778999999999999999999999999999999998 999999999
Q ss_pred hhCHH
Q 005543 622 RMGFE 626 (691)
Q Consensus 622 R~G~e 626 (691)
|+|++
T Consensus 537 R~g~~ 541 (541)
T TIGR02041 537 RTGII 541 (541)
T ss_pred hcCCC
Confidence 99863
No 6
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=3.4e-107 Score=931.43 Aligned_cols=503 Identities=26% Similarity=0.398 Sum_probs=445.8
Q ss_pred cCCCCChhhhhhhhcCCCcc-chHHhhhhcCCCCC-hhHHHhhhhceeEeeccCCccCCccceEEEEEecCCCccCHHHH
Q 005543 67 TETKRSKVEIIKEQSNFIRY-PLNEELLTDAPNVN-ESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLY 144 (691)
Q Consensus 67 ~~~k~~~~E~~K~~~~~l~~-~~~~~~~~~~~~~~-~~~~~~~K~~G~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql 144 (691)
+.+|+||+|+||++|+||+. +.+.+++.. ..++ +++.++|||||+|+|... .++||||||+|+|+||++||
T Consensus 61 ~~~kl~~~E~~K~~~~~l~~~~~l~~~~~~-~~~~~~~~~~~~k~~G~y~~~~~------~~~fM~RvripgG~lt~~Q~ 133 (593)
T PRK09567 61 AGKKLCDQEKWKREENPFDAWDRLKAQAAA-GAFPKPADNFRWKYHGLFYVAPA------QDSYMCRLRIPNGILTHWQF 133 (593)
T ss_pred ccCCCCHHHHHhhcCCcchhhhHHHHHHhc-CCCCChhhhhhhccceEEEEccc------CCeEEEEEEeCCeecCHHHH
Confidence 35689999999999999983 223333333 3454 788889999999998632 36899999999999999999
Q ss_pred HHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CchhhhHHHHHHHH
Q 005543 145 LTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAE 222 (691)
Q Consensus 145 ~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RNV~a~p~~-~~~~~~~d~~~la~ 222 (691)
++|++||++||+|++|||||||||||||.++|+++++++| .++| +|.++|||++||||+||++ .|+.++.|++++++
T Consensus 134 ~~la~ia~~yg~g~~~lTTRq~iQlhgI~~~d~~~i~~~l-~~~GL~t~~a~gD~~RNV~~~P~ag~~~~e~~D~~~~a~ 212 (593)
T PRK09567 134 AGLADLADRHGGGYSHVTTRANLQLREIPPEHAVPVLEGL-VDLGLTARGSGADNIRNVTGSPTAGIDPQELLDTRPYAR 212 (593)
T ss_pred HHHHHHHHHHCCCeEEEeccccEEeccCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCcCCCCCCCCChhhccchHHHHH
Confidence 9999999999999999999999999999999999999999 8888 8889999999999999985 88999999999999
Q ss_pred HHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCccCccCCE
Q 005543 223 NIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDI 302 (691)
Q Consensus 223 ~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c~~~~~~DI 302 (691)
+|.++|.. + +++| +|||||||+||||+++|....+|||
T Consensus 213 ~l~~~~~~--------------------------------------~-~~~~---~LPrKfkiaisg~~~~~~~~~~nDi 250 (593)
T PRK09567 213 EWHHHILN--------------------------------------D-RSLY---GLPRKFNVAFDGGGRIATLEDTNDI 250 (593)
T ss_pred HHHHHHhC--------------------------------------C-chhc---CCCCCeEEEEECCCcccccccccce
Confidence 99877531 1 2344 4999999999999999999999999
Q ss_pred EEEEEecCCCcc----ceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 005543 303 GVVVVSDENGEP----QGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKY 377 (691)
Q Consensus 303 g~v~~~~~~g~~----~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ai~~~~rd~G~R~~R~~aRlk~ 377 (691)
||+++.+++|.. .||+|++||++|+. .+|..++ ||++|+++++++||+++|+|||+|+||+++||||
T Consensus 251 gf~a~~~~~g~~~~~g~gf~v~vGG~~g~~--------~~a~~~~~~v~~e~v~~~~~Ai~~~f~d~G~R~~R~~aRlk~ 322 (593)
T PRK09567 251 GFQAVRVLEGAGVAPGVYFRLVLGGITGHK--------DFARDTGVLLRPEEATAVADAIVRVFIENGDRTNRKKARLKY 322 (593)
T ss_pred eeEEEEecCCccccccceEEEEEecccCCC--------cchhhhhccCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHH
Confidence 999987644442 58999999999852 3677787 6999999999999999999999999999999999
Q ss_pred HHHhhChhHHHHHHHHHhCCCCCCC-----CCCCccccccccceEeec-CCcEEEEEEeCCCCCCHHHHHHHHHHHHHhC
Q 005543 378 LISSWGIEKFRSVVEQYYGKKFEPF-----RQLPEWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYN 451 (691)
Q Consensus 378 li~~~G~e~f~e~le~~~g~~l~~~-----~~~~~~~~~d~~G~~~q~-dG~~~v~i~vp~Grita~ql~~LA~iAe~yg 451 (691)
+|++||+++|++++++++|+++.+. .+.+.+...+|+|||+|+ +|.|+|++++|+|+|+++|++.||++|++||
T Consensus 323 li~~~G~e~f~~~ve~~~~~~l~~~~~~~~~~~~~~~~~~~~Gv~~Qkq~G~~~v~v~vp~Grlt~~ql~~LA~iA~~yg 402 (593)
T PRK09567 323 VLDAWGFDKFLEAVEEKLGRPLTRVPAEAVAPRPAADRFAHVGVHPQKQPGLNWIGVVLPVGRLTTDQMRGLAKIAARYG 402 (593)
T ss_pred HHHHHCHHHHHHHHHHHhcccccccchhhcCCCcchhccccceeeccCCCCceEEEEECCCCccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999877532 223345567899999999 6999999999999999999999999999999
Q ss_pred C-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHh
Q 005543 452 L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEK 530 (691)
Q Consensus 452 ~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~ 530 (691)
. .||||+||||+|++|+++++++|++.|.+.||.+. .++.+++++||+|+++|+++++||++++..|.++|+..+
T Consensus 403 ~g~irlT~~Qni~l~~V~~~~~~~l~~~L~~~Gl~~~--~~~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~-- 478 (593)
T PRK09567 403 DGEIRLTVWQNLLISGVPDADVAAVEAAIEALGLTTE--ASSIRAGLVACTGNAGCKFAAADTKGHALAIADYCEPRV-- 478 (593)
T ss_pred CCEEEEeCCCCeEEcCCCHHHHHHHHHHHHHcCCCCC--CcceeeccEecCCCCCCCccHhhHHHHHHHHHHHHHHhc--
Confidence 7 79999999999999999999999999999999864 345556799999999999999999999999999887543
Q ss_pred cCCCCCCceEEEEEcCCCCCCCcccccEEEEeec--------CceEEEEEcCcCC-CccchhhhccCCChhhHHHHHHHH
Q 005543 531 VGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--------PNSYQIWLGGTHN-QTTLARTFMNKVKVQELEKVFEPL 601 (691)
Q Consensus 531 ~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g--------~~gy~I~lGG~~~-~~rla~~l~~~v~~eel~~~l~~l 601 (691)
+ +|.+|+||||||||+|++|+++||||+|.. ..+|+||+||+.+ .+++|+.+...|+.++++++++++
T Consensus 479 -~--l~~~ikI~vSGCpn~Ca~~~iaDIGfvG~~~~~~~g~~~~gy~v~lGG~~g~~~~lg~~~~~~vp~eev~~~l~~l 555 (593)
T PRK09567 479 -A--LDQPVNIHLTGCHHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIVVGGGFGEDAAIGREVFRDVKAEDAPRLVERL 555 (593)
T ss_pred -C--CCCCcEEEEECCCccccccccCCEEEEeeEeccCCCCccceEEEEECCCCCCCCCcchHhhcCCCHHHHHHHHHHH
Confidence 3 468899999999999999999999999952 3689999999987 689999999999999999999999
Q ss_pred HHHHHHhcc-cCCCcHhHHHHhhCHHHHHHHHHhH
Q 005543 602 FYYWKQKRQ-TKDESFGDFTNRMGFEKLQELVEKW 635 (691)
Q Consensus 602 l~~y~~~~~-~~~Erf~~~i~R~G~e~~~~~l~~~ 635 (691)
+..|.++++ + +|+|++|++|+|+++|++.+...
T Consensus 556 l~~y~~~r~~~-~E~f~~f~~R~g~e~l~~~l~~~ 589 (593)
T PRK09567 556 LRAYLAHRQGP-DETFQAFTRRHDPEALRSLAEEQ 589 (593)
T ss_pred HHHHHHhcCCC-CCcHHHHHHHcCcHHHHHHHhcc
Confidence 999999988 6 99999999999999999999654
No 7
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-102 Score=866.62 Aligned_cols=491 Identities=39% Similarity=0.676 Sum_probs=446.4
Q ss_pred CCChhhhhhhhcCCCccchHHhhhhc-CCCCChhHHHh-hhhceeEeeccCCccCCccceEEEEEecCCCccCHHHHHHH
Q 005543 70 KRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQL-IKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTM 147 (691)
Q Consensus 70 k~~~~E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~-~K~~G~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql~~l 147 (691)
+.+ +|++|+++++|+.++.+.+.+. ...+++++++. +||||+|+| +++|.||||+|+|+|.+||+||++|
T Consensus 6 ~~~-~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y~q-------~~~~~~MlRvriPgG~ls~~q~r~l 77 (510)
T COG0155 6 PLD-NERLKAESNFLRGTIEDQLSDRLSGGLCEDDFRPLLKFDGLYLQ-------EPDHAFMLRVRIPGGILSPKQLRAL 77 (510)
T ss_pred CcC-HHHHhhhhhhhHHHHHHHhhhccccCCCHHHHHHHHhhcceeec-------ccccceeEEEecCCCccCHHHHHHH
Confidence 444 9999999999998887777754 56899999997 999999999 3568999999999999999999999
Q ss_pred HHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CchhhhHHHHHHHHHHH
Q 005543 148 DDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAENIA 225 (691)
Q Consensus 148 a~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RNV~a~p~~-~~~~~~~d~~~la~~i~ 225 (691)
++||++||+|+++||||||||||||.++|++++++.| .++| .|+++|||++|||+++|.. .+..++.|.++
T Consensus 78 ~~iA~~yg~g~~~iTtRQniQ~hgI~~~d~~~i~~~l-~~vgl~ti~~~gd~~Rnv~~~P~ag~~~~ei~D~r~------ 150 (510)
T COG0155 78 ADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAEL-ASVGLHTIATAGDVARNVTGDPLAGLDADEIADPRP------ 150 (510)
T ss_pred HHHHHHhCCCeEEEeecccceecccccccHHHHHHHH-HHcCCcchhhccccccceecCcccccchhhcccchh------
Confidence 9999999999999999999999999999999999999 7777 9999999999999998743 54555555553
Q ss_pred HhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCccCccCCEEEE
Q 005543 226 ALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVV 305 (691)
Q Consensus 226 ~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c~~~~~~DIg~v 305 (691)
+.+|.++|+++++ +..+|||||||+|++|++||+++++|||||+
T Consensus 151 ------~~~~~~~~l~~~~------------------------------~~~~LPRKFkiav~g~~~~~v~~~~~Di~~~ 194 (510)
T COG0155 151 ------LAEILRIWLDGEK------------------------------GFAYLPRKFKIAVDGGPDNDVDVLINDIGFV 194 (510)
T ss_pred ------HHHHHHHHhcCcc------------------------------chhcCCcceEEEEecCcccchhhhccceeEE
Confidence 4457789987543 1358999999999999999999999999999
Q ss_pred EEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhChh
Q 005543 306 VVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE 385 (691)
Q Consensus 306 ~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G~e 385 (691)
++.++ +++.||+|+||||+|++| ..++|+++. +|++++++++++||+.+|+|||+|.||+++|+||+|++||+|
T Consensus 195 a~~~~-~~~~Gf~v~VGGglg~~~--~~~~~~~~~---~v~~~~~~~~~~aiv~~~~d~G~R~nr~~aR~k~lv~~~G~E 268 (510)
T COG0155 195 AIKEN-DGLLGFNVLVGGGLGRTH--PKTAPRLAE---FVPPEDVLEVVEAIVRVYRDYGRRANRKKARLKYLVEALGVE 268 (510)
T ss_pred Eeccc-CCccceEEEEccccccCC--cchhhHHhh---ccCHHHHHHHHHHHHHHHHhcchhhhhhhhhHHHHHHHhChH
Confidence 99975 455899999999999987 334444433 677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCccccccccceEeecCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEE
Q 005543 386 KFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIIL 464 (691)
Q Consensus 386 ~f~e~le~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L 464 (691)
+|+++|++++|+++.|.++...+...+|+||++|+||.|++++.+|+|+|+++.+..|++.+++++. +||+|++|||+|
T Consensus 269 ~f~~~ve~~~g~~~~~~~~~~~~~~~d~~Gw~~~~~g~~~~g~~v~~Grl~~~~~~~l~~~~~~~~~~eiRlT~~QnLii 348 (510)
T COG0155 269 KFRREVEPRLGKPFEPARPREFTGNGDHIGWVPQKDGLWHLGLAVPNGRLKAEGLIPLATEAEEIGFGEIRLTPNQNLII 348 (510)
T ss_pred HHHHHHHHhhCcccCccccccccCCCCceeEEEcCCCcEEEEEecceeeecCccchHHHHHHHHHhhccEEeccCcceEe
Confidence 9999999999999988877777788899999999999999999999999999999999999999997 799999999999
Q ss_pred ccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEE
Q 005543 465 CDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVT 544 (691)
Q Consensus 465 ~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vS 544 (691)
+||+.++++.|++.|.+.||.+ +.++++++++||+|.++|++|++||++.++.|.+++++.++.+++ +++||||
T Consensus 349 ~~v~~~~~~~i~~~l~~~Gl~t--~~~~l~~~~~AC~G~p~C~lA~aet~~~a~~i~~~l~~~~~~~~~----~i~i~is 422 (510)
T COG0155 349 PNVPEAELEAILRILAALGLVT--APSSLRRNSIACVGLPTCALALAETERDAPRIIARLEDLLDKHGL----PITLHIS 422 (510)
T ss_pred cCCCHHHHHHHHHHHHHcCCCC--CCcchhhhcccCCCCCchhhhHhhHHHHHHHHHHHHHhhhcccCC----ceeEEec
Confidence 9999999999999999999998 467788999999999999999999999999999999998877665 5999999
Q ss_pred cCCCCCCCcccccEEEEeecCceEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHHHHHHhcccCCCcHhHHHHhhC
Q 005543 545 GCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMG 624 (691)
Q Consensus 545 GCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G 624 (691)
||||+|++|++++|||+|+..+.|+||+||+...+++++.+.+.++.+++.++++.++..|.++|.. +|+|++|+.|.|
T Consensus 423 GCpn~Ca~~~~a~Igl~G~~~~~y~v~lGG~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~R~~-gE~f~d~~~R~g 501 (510)
T COG0155 423 GCPNGCGRPHLAEIGLVGKAKGGYQVYLGGGADGTRGGKLYGENVPAEEILDAIDRLIGRYAKERHE-GESFGDFVIRAG 501 (510)
T ss_pred cCcchhcCcccCceeEeeccCcceEEEecCCCCCCccceeecCCCCHHHHHHHHHHHHHHHHhccCC-CccHHHHHHHhC
Confidence 9999999999999999999888899999996667889999999999999999999999999999999 999999999998
No 8
>PLN02431 ferredoxin--nitrite reductase
Probab=100.00 E-value=2.4e-98 Score=853.01 Aligned_cols=481 Identities=25% Similarity=0.401 Sum_probs=417.9
Q ss_pred CCCChhhhhhhhcCCCcc---chHHhhhh-cCCCCCh-----hHHH-hhhhceeEeeccCCccCCccceEEEEEecCCCc
Q 005543 69 TKRSKVEIIKEQSNFIRY---PLNEELLT-DAPNVNE-----SATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGK 138 (691)
Q Consensus 69 ~k~~~~E~~K~~~~~l~~---~~~~~~~~-~~~~~~~-----~~~~-~~K~~G~y~q~~rd~r~~~~~~fmlRir~pgG~ 138 (691)
+|+||+|++|.+++||.- .-+++++. ..++|++ +|+. +|||+|+|+|+.++ +++||||||+|+|.
T Consensus 73 ~~ln~~E~~K~~~~~~~~~~~~~i~~~a~~g~~~i~~~~~~~~d~~~r~kw~Gl~~~~~~~-----~~~fMlRvRiPgG~ 147 (587)
T PLN02431 73 KGINPQEKVKLEKEPMKLFMENGIEELAKTPFEEIDKSKLSKDDIDVRLKWLGLFHRRKHQ-----YGRFMMRLKLPNGV 147 (587)
T ss_pred ccCCHHHHhhcccCcccccchhhHHHHHhcChhhcCcccCChHHHHhhhhheeeeeecCCC-----CCceEEEEecCCcc
Confidence 579999999999999963 23455654 4577877 8886 89999999986542 46899999999999
Q ss_pred cCHHHHHHHHHHHHHhC-CCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CchhhhH
Q 005543 139 VSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYL 215 (691)
Q Consensus 139 lt~~ql~~la~iA~~yG-~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RNV~a~p~~-~~~~~~~ 215 (691)
||++||++|++||++|| +|++|||||||||||||..+|+++++++| +++| +|.++|||++|||++||.. .|+.+++
T Consensus 148 lt~~Qlr~la~ia~~yg~~G~i~iTtRqniQl~gI~~ed~p~i~~~L-~~vGL~t~~a~gd~vRNI~~~P~aG~~~~e~~ 226 (587)
T PLN02431 148 TTSAQTRYLASVIEKYGEDGCADVTTRQNWQIRGVVLPDVPAILKGL-EEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIV 226 (587)
T ss_pred cCHHHHHHHHHHHHHhCCCCeEEEecCcceEeCCCCHHHHHHHHHHH-HHcCCCchhccCCCCCCcccCCCCCCCccccc
Confidence 99999999999999999 58999999999999999999999999999 8889 7789999999999999975 8899999
Q ss_pred HHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCc
Q 005543 216 FAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSV 295 (691)
Q Consensus 216 d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c~ 295 (691)
|+++++.+|.++|+. +|.+||+ | .+|||||||+||||+++|+
T Consensus 227 Dt~pla~~l~~~~~~----------------------------------~~~~~~~--~--~~LPrKfkiavsG~~~~~~ 268 (587)
T PLN02431 227 DTRPYTNLLSDYITN----------------------------------NGRGNPE--I--TNLPRKWNVCVVGSHDLFE 268 (587)
T ss_pred cHHHHHHHHHHHhhh----------------------------------cccCCcc--c--ccCCCCeEEEEecCccccc
Confidence 999999999988742 0112333 3 5899999999999999999
Q ss_pred cCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHHHHHhCCCCcchhhh
Q 005543 296 DILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSR 374 (691)
Q Consensus 296 ~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ai~~~~rd~G~R~~R~~aR 374 (691)
.+.+|||||+++.++ |. .||+|+|||++|++. +..+..++ ||++|++++++++|+++|+|||+|+||+++|
T Consensus 269 ~~~~nDigf~~~~~~-g~-~Gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~v~~av~~~f~d~G~R~~R~kaR 340 (587)
T PLN02431 269 HPHINDLAYMPATKD-GR-FGFNLLVGGFFSPKR------CAEAIPLDAWVPADDVVPLCKAILEAFRDLGTRGNRQKTR 340 (587)
T ss_pred cccccceEEEEEEEC-Cc-eEEEEEEeCCcCCCC------ccccchhhcccCHHHHHHHHHHHHHHHHHhCCccchhhhH
Confidence 999999999998864 44 699999999998641 33555665 8999999999999999999999999999999
Q ss_pred HHHHHHhhChhHHHHHHHHHhC-CCCCCCCC--C--CccccccccceEeec-CCcEEEEEEeCCCCCCHHHHHHHHHHHH
Q 005543 375 MKYLISSWGIEKFRSVVEQYYG-KKFEPFRQ--L--PEWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIE 448 (691)
Q Consensus 375 lk~li~~~G~e~f~e~le~~~g-~~l~~~~~--~--~~~~~~d~~G~~~q~-dG~~~v~i~vp~Grita~ql~~LA~iAe 448 (691)
|+|+|++||+++|+++++++++ .+++...+ . +.|...+|+|||.|+ +|.|+|++++|+|+|+++||+.||++|+
T Consensus 341 lk~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~Qk~~G~~~v~v~vp~Grlt~~qL~~LA~lA~ 420 (587)
T PLN02431 341 MMWLIDELGVEGFRSEVEKRMPNGELERAASEDLVDKKWERRDYLGVHPQKQEGLSYVGLHVPVGRLQAADMDELARLAD 420 (587)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcccccccccchhcccceeEEEeeccCCeEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998874 45543322 1 235567899999998 5999999999999999999999999999
Q ss_pred HhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHH
Q 005543 449 KYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAV 527 (691)
Q Consensus 449 ~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~ 527 (691)
+||. +||+|++|||+|++|+.+++++++++|...|+... .++.+++++||+|+++|+++++||++++.+|.+++.+.
T Consensus 421 ~yG~g~irlT~~Qni~i~~V~~~~v~~l~~~l~~~g~~~~--~~~~~r~vvACtG~~~C~~ai~eTk~~A~~L~~~l~~~ 498 (587)
T PLN02431 421 EYGSGELRLTVEQNIIIPNVPNSKVEALLAEPLLQRFSPN--PGLLLKGLVACTGNQFCGQAIIETKARALKVTEELERL 498 (587)
T ss_pred HhCCCeEEEcCCCCEEECCCCHHHHHHHHHHHHhcCCCCC--CCCCccceeECCCccccCccHHHHHHHHHHHHHHHHHh
Confidence 9998 79999999999999999999999999887787653 56788999999999999999999999999998887643
Q ss_pred HHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeec--------CceEEEEEcCcCC-CccchhhhccCCChhhHHHHH
Q 005543 528 FEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--------PNSYQIWLGGTHN-QTTLARTFMNKVKVQELEKVF 598 (691)
Q Consensus 528 l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g--------~~gy~I~lGG~~~-~~rla~~l~~~v~~eel~~~l 598 (691)
+ .+|.|++||||||||+|++|+++||||+|.. ..+|+||+||+.| ++++|+.+...|+.+++++++
T Consensus 499 ~-----~lp~k~kI~vSGCpn~C~~~~iaDIG~vG~~~~~~~g~~v~gf~V~lGG~~G~~~~~g~~l~~~Vp~eel~~~v 573 (587)
T PLN02431 499 V-----EVPRPVRMHWTGCPNSCGQVQVADIGFMGCMARDENGKAVEGADIFVGGRVGSDSHLAEEYKKGVPCDELVPVV 573 (587)
T ss_pred h-----cCCCCeEEEEECCcccccccccccEEEEeeeeecCCCccceEEEEEECCcCCCCCccchhhhcCCCHHHHHHHH
Confidence 2 3478999999999999999999999999941 1379999999987 789999999999999999999
Q ss_pred HHHH-HHHHHh
Q 005543 599 EPLF-YYWKQK 608 (691)
Q Consensus 599 ~~ll-~~y~~~ 608 (691)
++++ ++|..+
T Consensus 574 ~~il~~~~~~~ 584 (587)
T PLN02431 574 ADILIEEFGAK 584 (587)
T ss_pred HHHHHHHhhhc
Confidence 9966 455443
No 9
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=6.2e-95 Score=820.82 Aligned_cols=483 Identities=27% Similarity=0.458 Sum_probs=421.4
Q ss_pred CCCCChhhhhhhhcCCCc-cchHHhhhhc-CCCCChhHHH-hhhhceeEeeccCCccCCccceEEEEEecCCCccCHHHH
Q 005543 68 ETKRSKVEIIKEQSNFIR-YPLNEELLTD-APNVNESATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLY 144 (691)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~-~~~~~~~~~~-~~~~~~~~~~-~~K~~G~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql 144 (691)
.+|+||+|+||.+++||+ ...++++++. .++++++|+. ++||+|+|.|... .++||||||+|+|.+|++||
T Consensus 9 ~~~~n~~E~~K~~~~~~~~~~~i~~~a~~~~~~~~~~d~~~~~~~~G~~~~~~~------~g~fmvRvrip~G~lt~~Ql 82 (513)
T PRK09566 9 GKKLNKIEKNKAEKDGLAVKDELEKFAQIGWEAMDETDLELRLKWLGMFWRPVT------PGKFMLRLRVPNGILTSEQL 82 (513)
T ss_pred cccCCHHHHhhcccCHHHHHHHHHHHHHhCcccCCHHHHhhhheeeEEeeEcCC------CCeEEEEeccCCccCCHHHH
Confidence 578999999999999996 3345566644 4678888886 8999999965211 24799999999999999999
Q ss_pred HHHHHHHHHhC-CCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CchhhhHHHHHHH
Q 005543 145 LTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTA 221 (691)
Q Consensus 145 ~~la~iA~~yG-~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RNV~a~p~~-~~~~~~~d~~~la 221 (691)
+.|+++|++|| +|++|||||||||||||+.+++++++++| .++| ++.++|||++|||++||.. .|+.++.|++++|
T Consensus 83 r~la~ia~~yg~~g~i~lTtRQniql~~i~~~dl~~i~~~L-~~~GL~~~~~~~d~vRnv~~~P~ag~~~~e~~D~~~la 161 (513)
T PRK09566 83 RVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNRL-KAVGLTSVQSGMDNVRNITGSPVAGIDPDELIDTRPLT 161 (513)
T ss_pred HHHHHHHHHhCCCCeEEEEcccceeecCCcHHHHHHHHHHH-HHcCCCchhccCCCCCCccCCCCCCCCcchhhHHHHHH
Confidence 99999999999 79999999999999999999999999999 8888 7788999999999999975 8889999999999
Q ss_pred HHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCccCccCC
Q 005543 222 ENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTND 301 (691)
Q Consensus 222 ~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c~~~~~~D 301 (691)
.+|.++|..+ ..++++ | .+|||||||+||||+++|+.+.+||
T Consensus 162 ~~l~~~~~~~----------------------------------~~~~~~--~--~~LPrKfki~vsGc~~~c~~~~i~D 203 (513)
T PRK09566 162 QKLQDMLTNN----------------------------------GEGNPE--F--SNLPRKFNIAIAGGRDNSVHAEIND 203 (513)
T ss_pred HHHHHHhhcc----------------------------------cCCCCc--c--cCCCCceEEEEECCCCCcccccccc
Confidence 9999987521 001222 2 4799999999999999999999999
Q ss_pred EEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Q 005543 302 IGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLIS 380 (691)
Q Consensus 302 Ig~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ai~~~~rd~G~R~~R~~aRlk~li~ 380 (691)
|||+++.++ |. .||+||+||++|..+ |++|..++ ||+++++++++++|+++|++||+|+||+++||+++|+
T Consensus 204 iG~~~~~~~-~~-~gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~~~~av~~~f~~~g~r~~r~k~Rl~~lv~ 275 (513)
T PRK09566 204 IAFVPAYKD-GV-LGFNVLVGGFFSSQR------CAYAIPLNAWVKPDEVVRLCRAILEVYRDNGLRANRQKGRLMWLID 275 (513)
T ss_pred eEEEEEEEC-Ce-eEEEEEEecccCCCC------CcCceeeeeecCHHHHHHHHHHHHHHHHHhCCcccchhhhHHHHHH
Confidence 999998764 43 699999999998642 56787886 8999999999999999999999999999999999999
Q ss_pred hhChhHHHHHHHHHhCCCCCCCCC--CCccccccccceEeec-CCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEE
Q 005543 381 SWGIEKFRSVVEQYYGKKFEPFRQ--LPEWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRI 456 (691)
Q Consensus 381 ~~G~e~f~e~le~~~g~~l~~~~~--~~~~~~~d~~G~~~q~-dG~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irl 456 (691)
+||+++|++.+++++++++.+..+ ...|...+|+||+.|+ +|.|+|++++|+|+++++|++.||++|++||. .||+
T Consensus 276 ~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~G~lt~~~l~~la~ia~~yg~g~irl 355 (513)
T PRK09566 276 EWGIEKFRAAVEAQFGPPLLTAAPGDEIDWEKRDHIGVHPQKQAGLNYVGLHVPVGRLYAEDMFELARLAEVYGSGEIRL 355 (513)
T ss_pred HhhHHHHHHHHHHHhCcccCCcccchhhccccccccceeecCcCCeEEEEEEcCCccCCHHHHHHHHHHHHHhCCCeEEE
Confidence 999999999999999887654322 2345567899999998 59999999999999999999999999999998 7999
Q ss_pred cCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCC
Q 005543 457 TPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYN 536 (691)
Q Consensus 457 T~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p 536 (691)
|++|||+|++|+.+++++|++++...++... .++.+|+++||||+++|+++++||++++..|.++|++. .+ +|
T Consensus 356 T~~Qni~l~~i~~~~v~~l~~~~~~~~~~~~--~~~~~~~~vaC~G~~~C~~a~~dT~~~a~~l~~~l~~~---~~--lp 428 (513)
T PRK09566 356 TVEQNVIIPNIPDENLETFLAEPLLQKFSLE--PGPLARGLVSCTGNQYCNFALIETKNRALALAKELDAE---LD--LP 428 (513)
T ss_pred cCCCCEEEeCCCHHHHHHHHHHHhhccCCCC--CCccccCceeCcCcccccccHhhHHHHHHHHHHHHHHh---cC--CC
Confidence 9999999999999999999999766666543 35678999999999999999999999999998888643 23 47
Q ss_pred CceEEEEEcCCCCCCCcccccEEEEeec-------CceEEEEEcCcCC-CccchhhhccCCChhhHHHHHHHHHHHHHHh
Q 005543 537 ESVVIRVTGCPNGCARPYMAELGLVGDG-------PNSYQIWLGGTHN-QTTLARTFMNKVKVQELEKVFEPLFYYWKQK 608 (691)
Q Consensus 537 ~k~kI~vSGCpn~Ca~~~~aDIG~vG~g-------~~gy~I~lGG~~~-~~rla~~l~~~v~~eel~~~l~~ll~~y~~~ 608 (691)
.|++||||||||+|++|+++||||+|.. ..+|+||+||+.+ ++++|+.+...|+.++++++++.++..|...
T Consensus 429 ~~~kI~iSGCpn~C~~~~iaDIG~~G~~~~~dg~~~~g~~i~lGG~~g~~~~~g~~~~~~v~~~ev~~~i~~l~~~~~~~ 508 (513)
T PRK09566 429 QPVRIHWTGCPNSCGQPQVADIGLMGTKARKNGKTVEGVDIYMGGKVGKDAKLGECVQKGIPCEDLKPVLKDLLIEQFGA 508 (513)
T ss_pred CceEEEEECChhhhhchhhCCEEEEEEEeecCCcccceEEEEeCCccCccccccchhhcCcCHHHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999962 2689999999987 6899999999999999999999988777654
Q ss_pred cc
Q 005543 609 RQ 610 (691)
Q Consensus 609 ~~ 610 (691)
.+
T Consensus 509 ~~ 510 (513)
T PRK09566 509 KP 510 (513)
T ss_pred cc
Confidence 43
No 10
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=100.00 E-value=3.6e-75 Score=639.60 Aligned_cols=366 Identities=21% Similarity=0.333 Sum_probs=317.0
Q ss_pred eEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecC
Q 005543 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAP 205 (691)
Q Consensus 127 ~fmlRir~pgG~lt~~ql~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RNV~a~ 205 (691)
.||+|||+|+|+||++||++|+++|++||+|++|||||||||||||+.+ ++++++.| .++| ++.++|||.+|||++|
T Consensus 17 g~mvRvr~p~G~lt~~ql~~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l-~~~GL~~~~~~g~~~Rnv~~c 94 (390)
T TIGR02435 17 GLLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQAL-LAAGLGAAGAAADDIRNIEVS 94 (390)
T ss_pred eeEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHH-HHCCCCCccccCCcccccccC
Confidence 5899999999999999999999999999999999999999999999999 99999999 8888 5568999999999999
Q ss_pred CCC-CchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCCCceE
Q 005543 206 PAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFK 284 (691)
Q Consensus 206 p~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfK 284 (691)
|.+ .|..++.|++++|.+|.+.|.. ++ . ..+||||||
T Consensus 95 p~~g~~~~~~~dt~~la~~l~~~l~~--------------------------------------~~--~--~~~LPrKfk 132 (390)
T TIGR02435 95 PLAGIDPGEIADTRPLAAELRAALEN--------------------------------------ER--A--LLELPPKFS 132 (390)
T ss_pred ccccCCCccccchHHHHHHHHHHHhc--------------------------------------Ch--h--hhcCCCceE
Confidence 976 5677899999999999988741 11 1 247999999
Q ss_pred EEEecCCCCCccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHHh
Q 005543 285 VAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQREN 364 (691)
Q Consensus 285 i~isg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~~~~rd~ 364 (691)
|+||||+++|+.+++|||||+++.++ +. .||+|++||+.+. +..+++|+++++++++++++++|+++
T Consensus 133 i~vsgc~~~c~~~~~~DIG~~~~~~~-~~-~gf~v~vGG~~~~-----------~~~~~~v~~~~v~~~v~av~~~~~~~ 199 (390)
T TIGR02435 133 VAIDGGGRLVLLGDTADVRLQALTTG-AG-VAWVVSLAGISTS-----------ARSLVTVAPDAAVPVAVALLRVFVEL 199 (390)
T ss_pred EEEECCCccccCCCCCCEEEEEEecC-CE-EEEEEEEecCCCC-----------CCceEEeCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998864 33 5999999996442 22347899999999999999999999
Q ss_pred CCCCcchhhhHHHHHHhhChhHHHHHHHHHhCCCCCCC-----CCCCccccccccceEeecCCcEEEEEEeCCCCCCHHH
Q 005543 365 GRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPF-----RQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKM 439 (691)
Q Consensus 365 G~R~~R~~aRlk~li~~~G~e~f~e~le~~~g~~l~~~-----~~~~~~~~~d~~G~~~q~dG~~~v~i~vp~Grita~q 439 (691)
|+ ++|+||++++||+++|++++++. ..+.+. .+.++....+++||++|+|+.|+|++++|+|+|++++
T Consensus 200 g~-----~aR~k~li~~~g~e~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~~~~v~~~~p~G~i~~~~ 272 (390)
T TIGR02435 200 GG-----AARGRDLDDAFLFALALELVEDS--RPLIPDAAEGEAPRPAVDAAAPLGLHPQGDAGVTLGAGLALGQLTAAQ 272 (390)
T ss_pred Cc-----ccHHHHHHHHhHHHHHHHHHHhc--cccCCCccccccccCcccccCCCceeecCCCCeEEEEecCccccCHHH
Confidence 87 59999999999999999999983 332221 1112223457999999999779999999999999999
Q ss_pred HHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHH
Q 005543 440 KKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIP 518 (691)
Q Consensus 440 l~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~ 518 (691)
++.|+++|++||. .||+|+||||+|++|++++++++++.|.+.|+.+.. .++ +.+++||+|+++|+++++||++++.
T Consensus 273 l~~la~ia~~~g~~~irlT~~Q~l~i~~i~~~~~~~~~~~l~~~gl~~~~-~~~-~~~v~aC~G~~~C~~~~~~t~~~a~ 350 (390)
T TIGR02435 273 LRGLAQLAQALGDGDLRLTPWRALLVLGLPPERADAAQRALAALGLVTSA-SDP-RARIIACTGAPGCASALADTRADAE 350 (390)
T ss_pred HHHHHHHHHHhCCCeEEEcCCcceEEcCCCHHHHHHHHHHHHHCCCCcCC-CCC-eeeEEECCCccccccchhhHHHHHH
Confidence 9999999999998 799999999999999999999999999999998643 344 4569999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecCceE
Q 005543 519 DILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSY 568 (691)
Q Consensus 519 ~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy 568 (691)
+|.+++.. . .+++||||||||+|++|+++||||+|. .++|
T Consensus 351 ~l~~~~~~-------~--~~~~i~vSGC~n~C~~~~~adiG~~G~-~~g~ 390 (390)
T TIGR02435 351 ALAAYCEP-------T--APITVHLSGCAKGCAHPGPAAITLVAA-GAGY 390 (390)
T ss_pred HHHHHhcc-------c--CCcEEEEeCCcccccCCCCCCEEEEec-CCCC
Confidence 87765532 1 239999999999999999999999997 4343
No 11
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=7.8e-46 Score=440.15 Aligned_cols=298 Identities=16% Similarity=0.245 Sum_probs=265.3
Q ss_pred hhhhHHHHHHhhChhHHHHHHHHHhCCCC-----CCC----------------CCCCccccccccceEeecCCcEEEEEE
Q 005543 371 KYSRMKYLISSWGIEKFRSVVEQYYGKKF-----EPF----------------RQLPEWEFKSHLGWHEQGDGGLFCGLH 429 (691)
Q Consensus 371 ~~aRlk~li~~~G~e~f~e~le~~~g~~l-----~~~----------------~~~~~~~~~d~~G~~~q~dG~~~v~i~ 429 (691)
.++-|..+|..-++.+|.+++.++ |+.. +|+ ...+....+|++..+.|+||+|+|+++
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gc~~c~p~~~~~l~~~~~~~~~~~~~~~~~~~n~~~~~n~Qk~g~~~v~~~ 570 (847)
T PRK14989 492 SRQELFHLIRVEGIKTFEELLAKH-GKGYGCEVCKPTVGSLLASCWNEYILKPQHTPLQDTNDNFLANIQKDGTYSVIPR 570 (847)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHh-CCCCCCchhhHHHHHHHHhcCccccCChhhccccccccccccccccCCeEEEEEE
Confidence 356678888888999999988875 3321 110 000112457889999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhCCeEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcch
Q 005543 430 VDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLA 509 (691)
Q Consensus 430 vp~Grita~ql~~LA~iAe~yg~~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~a 509 (691)
+|+|++|++||+.||++|++||.++|+|++|||+|+||+.++++++++.|.++||.+.+++++.+|++++|||+++|+++
T Consensus 571 ~p~G~lt~~ql~~ia~iA~kyg~~~~iT~~Q~i~L~~i~~~~l~~v~~~L~~~Gl~~~~~~g~~vr~v~aC~G~~~C~~g 650 (847)
T PRK14989 571 SAGGEITPEGLMAVGRIAREFNLYTKITGSQRIGLFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYG 650 (847)
T ss_pred cCCcEeCHHHHHHHHHHHHHHCCcEEEcCCCceEeCCCCHHHHHHHHHHHHHCCCCcCCCCCCCcCceeeCCCCCccccc
Confidence 99999999999999999999998899999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecCceEEEEEcCcCC-CccchhhhccC
Q 005543 510 ITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHN-QTTLARTFMNK 588 (691)
Q Consensus 510 i~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~-~~rla~~l~~~ 588 (691)
+.||+.++..|.+++. ++++|+||||+||||||+|++++++||||+|. .+||+||+||+.| ++++|+++...
T Consensus 651 ~~dt~~la~~l~~~~~------~~~~P~k~ki~vSGC~~~C~~~~i~DiG~i~~-~~G~~v~vGG~~G~~~~~g~~l~~~ 723 (847)
T PRK14989 651 VGDSVGLGVELENRYK------GIRTPHKMKFGVSGCTRECAEAQGKDVGIIAT-EKGWNLYVCGNGGMKPRHADLLAAD 723 (847)
T ss_pred cccHHHHHHHHHHHhc------cCCCCCceEEEEeCCcccccccccccEEEEEe-cCceEEEECCCCCCCCcceeeecCC
Confidence 9999998877766642 56679999999999999999999999999997 6789999999988 79999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhcccCCCcHhHHHHhh--CHHHHHHHH-HhHcCCccccccccccccCcHHHHHHHHHHHHH
Q 005543 589 VKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRM--GFEKLQELV-EKWEGPAKATARYNLKLFADKETYEAVDELAKL 665 (691)
Q Consensus 589 v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~--G~e~~~~~l-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 665 (691)
++.+++++++++++++|++++++ +|||++|++|+ |++.|++.+ ++.+++++ .| +++|...++.|.|+
T Consensus 724 ~~~~~v~~~i~~~l~~y~~~~~~-~er~~~~~~r~~~g~~~~~~~~~~~~~~~~~-------~l--~~~~~~~~~~~~~~ 793 (847)
T PRK14989 724 LDRETLIKYLDRFMMFYIRTADK-LQRTAVWLENLEGGIDYLKAVIIDDKLGLNA-------QL--EEEMARLREAVVCE 793 (847)
T ss_pred CCHHHHHHHHHHHHHHHHHhCcc-cccHHHHHHHhhchHHHHHHHHhccchhHHH-------HH--HHHHHHHHHhccCc
Confidence 99999999999999999999999 99999999999 999999998 45788888 88 99999999999999
Q ss_pred hccchhhhhHHHHHHHHHHhhcCC
Q 005543 666 QNKNAHQLAIEVIRNFVASQQNGK 689 (691)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~ 689 (691)
|..++. ++...+.|++|.|++
T Consensus 794 w~~~~~---~~~~~~~~~~~~~~~ 814 (847)
T PRK14989 794 WTETVN---TPSAQTRFKHFINSD 814 (847)
T ss_pred hhhhhh---CHHHHHHhhhccCCC
Confidence 999886 556778899999974
No 12
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.5e-42 Score=411.75 Aligned_cols=281 Identities=18% Similarity=0.260 Sum_probs=246.8
Q ss_pred hhhHHHHHHhhChhHHHHHHHHHhCCCCC-C---CCC--------C-Cc--------cccccccceEeecCCcEEEEEEe
Q 005543 372 YSRMKYLISSWGIEKFRSVVEQYYGKKFE-P---FRQ--------L-PE--------WEFKSHLGWHEQGDGGLFCGLHV 430 (691)
Q Consensus 372 ~aRlk~li~~~G~e~f~e~le~~~g~~l~-~---~~~--------~-~~--------~~~~d~~G~~~q~dG~~~v~i~v 430 (691)
++-+..+|..-++..|.++++++ |+..+ . .+| + +. --.+++++++.|+||.|+|++++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qk~g~~~v~~~~ 560 (785)
T TIGR02374 482 RDELFEEIQARGFTTFAEVMNQL-GWKTKNGCSTCKPAVQYYLAMLYPGFILDEEATSLSNDHFLANIQKDGTYSVIPRM 560 (785)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHh-CCCCCCCCcccHHhHHHHHHhcCCcccccchhccccccceeeccccCCceEEEEec
Confidence 45788889989999999988764 54321 1 111 0 00 01357899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcch
Q 005543 431 DNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLA 509 (691)
Q Consensus 431 p~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~a 509 (691)
|+|++|++||+.|+++|++||. ++|+|++|||+|+||+.++++++++.|.+.|+. .++++.+|++++|||+++|+++
T Consensus 561 ~~G~lt~~ql~~la~ia~~yg~~~i~iT~~Q~i~l~gi~~~~l~~i~~~L~~~gl~--~~~g~~~r~v~aC~G~~~C~~g 638 (785)
T TIGR02374 561 YGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYE--HAYGKALRTVKTCVGSQWCRYG 638 (785)
T ss_pred CCcccCHHHHHHHHHHHHHhCCCeEEEcCCceEEECCCCHHHHHHHHHHHHhCCCC--CCCCCCccCcccCCCccccCcc
Confidence 9999999999999999999998 799999999999999999999999999999997 4678889999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecCceEEEEEcCcCC-CccchhhhccC
Q 005543 510 ITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHN-QTTLARTFMNK 588 (691)
Q Consensus 510 i~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~-~~rla~~l~~~ 588 (691)
+.||+.++.+|.+++. ++.+|+||||+||||||+|++++++||||+|. ..+|+||+||+.| .+++|+++...
T Consensus 639 ~~ds~~la~~l~~~~~------~~~~p~k~ki~vSGC~~~C~~~~~~DiG~i~~-~~g~~v~vGG~~g~~~~~a~~l~~~ 711 (785)
T TIGR02374 639 NQDSVQLAIQLERRYE------GLRTPHKIKIGVSGCERECAEAAGKDVGVIAT-EKGWNLYVGGNGGTHPRHGDLLAVD 711 (785)
T ss_pred hhhHHHHHHHHHHHhc------ccCCCCceEEEEECCccccchhhhCcEEEEEe-cCCeEEEECCcCCCCCcceeeecCC
Confidence 9999998887766653 34568999999999999999999999999997 6789999999887 79999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhcccCCCcHhHHHHhhCHHHHHHHHHhHcCCccccccccccccCcHHHHHHHHHHHHHhcc
Q 005543 589 VKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQNK 668 (691)
Q Consensus 589 v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 668 (691)
++.+++++++++++++|++++.+ +|||.+|++|+|++.|++.+.+.. .++ .| +++|...++.|.|+|..
T Consensus 712 ~~~e~v~~~i~~~l~~y~~~~~~-~er~~~~i~r~G~~~~~~~~~~~~-~~~-------~l--~~~~~~~~~~~~~~w~~ 780 (785)
T TIGR02374 712 EDEETLIGYIDRFLQYYRETADY-LERTAPWLERLGIDHVREVLFEDD-LRA-------EL--EESMQRDLSLIKCPWKE 780 (785)
T ss_pred CCHHHHHHHHHHHHHHHHHhCcc-cchHHHHHHHhChHHHHHHHHhhH-HHH-------HH--HHHHHHHHhhccChhHH
Confidence 99999999999999999999998 999999999999999999997632 255 77 99999999999999999
Q ss_pred chhhh
Q 005543 669 NAHQL 673 (691)
Q Consensus 669 ~~~~~ 673 (691)
++.++
T Consensus 781 ~~~~~ 785 (785)
T TIGR02374 781 TLEDK 785 (785)
T ss_pred hccCC
Confidence 88653
No 13
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=100.00 E-value=2.9e-41 Score=362.56 Aligned_cols=233 Identities=18% Similarity=0.314 Sum_probs=199.5
Q ss_pred HHhhhhce------eEeeccCCccCCccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCH
Q 005543 104 TQLIKFHG------SYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDL 177 (691)
Q Consensus 104 ~~~~K~~G------~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l 177 (691)
+.++|||| ++.+.+++ .+.||||+|+|+ .+|++||+.|++||++||+|.+|||||||||||||+.+|+
T Consensus 6 ~~~~~~~~~~~~gv~~~~~~~~-----~~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~~edl 79 (341)
T TIGR02066 6 YGKWKYHEVVKPGVIKHVAESG-----DVIYTVKAGTPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKI 79 (341)
T ss_pred ccceEEcccCCCcEEEEECCCC-----CcEEEEEeCCCc-ccCHHHHHHHHHHHHHhCCCeEEEeccCCEEEecCCHHHH
Confidence 44789999 77775443 348999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCc-ceecCCCC-CchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhh
Q 005543 178 KTVMRSIIRSMGSTLGACGDLNR-NVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVK 255 (691)
Q Consensus 178 ~~v~~~L~~~~g~t~~a~GD~~R-NV~a~p~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~ 255 (691)
++++++| +++|++.+++|+.+| ||++||+. .|..+..|+.+++..|.+.|.. .
T Consensus 80 ~~i~~~L-~~~Gl~~~~~G~~vrrni~aC~G~~~C~~a~~dt~~l~~~l~~~l~~-------~----------------- 134 (341)
T TIGR02066 80 QPLIDEL-EEVGFPVGGTGDAVKGNIVHTQGWLHCHIPAIDASGIVKAVMDELYE-------Y----------------- 134 (341)
T ss_pred HHHHHHH-HhccCCCCCCCCccccccccCcCCCCCCcchhchHHHHHHHHHHHHH-------H-----------------
Confidence 9999999 899988889999899 99999985 8999999999998888766531 0
Q ss_pred hccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCccCccCCEEEEEEec--------------------------
Q 005543 256 ARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD-------------------------- 309 (691)
Q Consensus 256 ~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c~~~~~~DIg~v~~~~-------------------------- 309 (691)
|....||+||||+||||+++|+.++++||||+++..
T Consensus 135 ------------------~~~~~lP~KfKI~vSGC~~~C~~~~~~Dig~~g~~~~~p~~~~~~~~~~c~~~~Cv~~CP~~ 196 (341)
T TIGR02066 135 ------------------FTDHKLPAMVRISLSCCANMCGGVHASDIAIVGIHRKPPKINHEAVRNVCEIPSVVAACPTG 196 (341)
T ss_pred ------------------HhcccccccceeccccccccccchhhccccccccccCCcEEcHHHHHhhcCCCceEeeCchh
Confidence 112469999999999999999999999999998632
Q ss_pred ------CC-----------------------------CccceEEEEEcCCCCCcCCcccccCccccccC-CCCH-----H
Q 005543 310 ------EN-----------------------------GEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----E 348 (691)
Q Consensus 310 ------~~-----------------------------g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~-----e 348 (691)
+. ++..||.|++||++|+.. ..|++|+.+. |++. |
T Consensus 197 Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~vGG~~g~~~----~~p~lg~~~~~~~~~~~~~~e 272 (341)
T TIGR02066 197 ALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWVGGKLSNAR----VMPELSKVVVPWIPNNPPRWP 272 (341)
T ss_pred hceecccCCCCceeeccccCCcCCchHHhCchhhccCCCCCeEEEEEccccCccc----cCCcccceecccccCCCcchH
Confidence 10 223799999999987431 1399998875 7776 7
Q ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhChhHHHHHHHH
Q 005543 349 DILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393 (691)
Q Consensus 349 ~v~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G~e~f~e~le~ 393 (691)
++++++++++++|+++|. +++||+++|+|+|+++|++++..
T Consensus 273 ~~~~~i~~i~~~~~~~~~----~~eR~g~~i~RvG~~~f~~~v~~ 313 (341)
T TIGR02066 273 ELVAYVKKILEAWKANAK----KHERLIEWVERIGWERFFELVGL 313 (341)
T ss_pred HHHHHHHHHHHHHHHcCc----CCccHHHHHHHHhHHHHHHHHCC
Confidence 999999999999999986 36999999999999999998863
No 14
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=100.00 E-value=7.5e-38 Score=323.44 Aligned_cols=223 Identities=25% Similarity=0.429 Sum_probs=199.6
Q ss_pred ceeEeeccCCccCCccceEEEEEecCC-CccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHc
Q 005543 110 HGSYQQYNRDERGAKSYSFMLRTKNPC-GKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSM 188 (691)
Q Consensus 110 ~G~y~q~~rd~r~~~~~~fmlRir~pg-G~lt~~ql~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~ 188 (691)
.|+..+.+. +|++||++|. |.+++++++.|++||++||+|.+|||+||++++|+|+.++++++..+| +++
T Consensus 20 ~Gvi~r~~~--------t~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L-~~i 90 (317)
T COG2221 20 YGVIKRRDG--------TYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEEL-REI 90 (317)
T ss_pred CceeeeccC--------cEEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHH-HHc
Confidence 477776543 5999999986 899999999999999999999999999999999999999999999999 899
Q ss_pred CCCCCCCCCCCcceecCCCC-CchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCC
Q 005543 189 GSTLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFP 267 (691)
Q Consensus 189 g~t~~a~GD~~RNV~a~p~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~ 267 (691)
|+..|+.||.+|||++||++ .|..++.|+.+++++|.+.|.
T Consensus 91 G~~~G~~G~~vr~i~aC~G~~~C~~a~~Dt~~la~~l~e~f~-------------------------------------- 132 (317)
T COG2221 91 GLPVGSTGPAVRAIVACPGPRTCETALYDTTELARRLEEEFL-------------------------------------- 132 (317)
T ss_pred CCCCCCcchhhhhhhcCcCcccccccccChHHHHHHHHHHhh--------------------------------------
Confidence 99999999999999999998 799999999999999987753
Q ss_pred CCCCCCcCCCCCCCceEEEEecCCCCCccCccCCEEEEEEecC-------------------------------------
Q 005543 268 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE------------------------------------- 310 (691)
Q Consensus 268 ~~~e~~yg~~~LPrKfKi~isg~~~~c~~~~~~DIg~v~~~~~------------------------------------- 310 (691)
...+|.||||+|||||++|+.+..+||||+++++.
T Consensus 133 --------~~~~P~KfKI~vsGCPn~C~r~~~~DigivGv~~P~~~~E~c~gc~~cv~~C~~gAI~~~~~~l~id~~~Ci 204 (317)
T COG2221 133 --------EVPVPYKFKIAVSGCPNDCTRPQAHDIGIVGVWKPKVDEELCRGCGKCVKVCPTGAITWDGKKLKIDGSKCI 204 (317)
T ss_pred --------cCCCCceEEEEeecCCcccccccccceeEEEeecCccCHHHhchhHhHHHhCCCCceeeccceEEEehhhcc
Confidence 14689999999999999999999999999999762
Q ss_pred --------------CCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHHHHHhCCCCcchhhhH
Q 005543 311 --------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRM 375 (691)
Q Consensus 311 --------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ai~~~~rd~G~R~~R~~aRl 375 (691)
+++..|+.|+|||.+|+. .|+.+.++- +.++|++++++++++++|++|++.. ++||
T Consensus 205 ~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk~Gr~------~~r~g~~~~~~~~~dei~~ii~~~~e~~~~~~~~~---~~Ri 275 (317)
T COG2221 205 GCGKCIRACPKAAFRGEKVGIAILVGGKTGRE------LGRVGKPLVPVEDEDEIIDIIKKTIEVWREYAEKP---GERI 275 (317)
T ss_pred CccHHhhhCChhhcchhhccEEEEEccccCCc------cccccccccccCCHHHHHHHHHHHHHHHHHhcccc---cchH
Confidence 245579999999999875 368888885 6799999999999999999999732 3499
Q ss_pred HHHHHhhChhHHHHHHHHHhC
Q 005543 376 KYLISSWGIEKFRSVVEQYYG 396 (691)
Q Consensus 376 k~li~~~G~e~f~e~le~~~g 396 (691)
.++|+|.|+++|++++.....
T Consensus 276 gd~I~r~G~~kF~e~i~~~~~ 296 (317)
T COG2221 276 GDFIDRVGFEKFLEEILREVK 296 (317)
T ss_pred HHHHHHHhHHHHHHHHHHhhc
Confidence 999999999999999876543
No 15
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=2.7e-37 Score=350.54 Aligned_cols=272 Identities=17% Similarity=0.174 Sum_probs=227.8
Q ss_pred ccccceE-eec-CCcEEEEEEeCCCCCCHHHHHHHHHHHHHhC-C-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCC
Q 005543 411 KSHLGWH-EQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYN-L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLL 486 (691)
Q Consensus 411 ~d~~G~~-~q~-dG~~~v~i~vp~Grita~ql~~LA~iAe~yg-~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~ 486 (691)
..|+|++ +|+ +|.|++|+++|+|++|++|++.||++|++|| . .+++|+||||||+||+.+++++|++.|.++||.+
T Consensus 51 ~~~~G~~~~~~~~g~fmvRvrip~G~lt~~Qlr~la~ia~~yg~~g~i~lTtRQniql~~i~~~dl~~i~~~L~~~GL~~ 130 (513)
T PRK09566 51 LKWLGMFWRPVTPGKFMLRLRVPNGILTSEQLRVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNRLKAVGLTS 130 (513)
T ss_pred heeeEEeeEcCCCCeEEEEeccCCccCCHHHHHHHHHHHHHhCCCCeEEEEcccceeecCCcHHHHHHHHHHHHHcCCCc
Confidence 4566776 444 5899999999999999999999999999999 5 7999999999999999999999999999999998
Q ss_pred CCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHH-Hhc-CCCCCCceEEEEEcCCCCCCCcccccEEEEeec
Q 005543 487 PRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVF-EKV-GLKYNESVVIRVTGCPNGCARPYMAELGLVGDG 564 (691)
Q Consensus 487 ~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l-~~~-gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g 564 (691)
..++++.+||+++||+++.|+.++.||.+++.+|.+++.... ... -..+|+||||+||||||+|++++++||||++..
T Consensus 131 ~~~~~d~vRnv~~~P~ag~~~~e~~D~~~la~~l~~~~~~~~~~~~~~~~LPrKfki~vsGc~~~c~~~~i~DiG~~~~~ 210 (513)
T PRK09566 131 VQSGMDNVRNITGSPVAGIDPDELIDTRPLTQKLQDMLTNNGEGNPEFSNLPRKFNIAIAGGRDNSVHAEINDIAFVPAY 210 (513)
T ss_pred hhccCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHhhcccCCCCcccCCCCceEEEEECCCCCcccccccceEEEEEE
Confidence 877788899999999999999999999999988887775311 000 123589999999999999999999999999963
Q ss_pred C---ceEEEEEcCcCCC--ccchhhhccCCChhhHHHHHHHHHHHHHHhccc---CCCcHhHHHHhhCHHHHHHHHHhHc
Q 005543 565 P---NSYQIWLGGTHNQ--TTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWE 636 (691)
Q Consensus 565 ~---~gy~I~lGG~~~~--~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~ 636 (691)
. .+|+||+||..+. +++|..+..+|+++++++++++++++|++++.+ .++||+++++|+|.++|++.+++++
T Consensus 211 ~~~~~gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~av~~~f~~~g~r~~r~k~Rl~~lv~~~G~e~f~~~v~~~~ 290 (513)
T PRK09566 211 KDGVLGFNVLVGGFFSSQRCAYAIPLNAWVKPDEVVRLCRAILEVYRDNGLRANRQKGRLMWLIDEWGIEKFRAAVEAQF 290 (513)
T ss_pred ECCeeEEEEEEecccCCCCCcCceeeeeecCHHHHHHHHHHHHHHHHHhCCcccchhhhHHHHHHHhhHHHHHHHHHHHh
Confidence 2 4899999998763 567988989999999999999999999998753 2689999999999999999987664
Q ss_pred CCc----------------------c---c-----cccccccccCcHHHHHHHHHHHHHhcc-----------chhhhhH
Q 005543 637 GPA----------------------K---A-----TARYNLKLFADKETYEAVDELAKLQNK-----------NAHQLAI 675 (691)
Q Consensus 637 ~~~----------------------~---~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 675 (691)
+.. . . ...|.|+| ++++++.|+++|+++|. .++.+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~G~l--t~~~l~~la~ia~~yg~g~irlT~~Qni~l~~i~~ 368 (513)
T PRK09566 291 GPPLLTAAPGDEIDWEKRDHIGVHPQKQAGLNYVGLHVPVGRL--YAEDMFELARLAEVYGSGEIRLTVEQNVIIPNIPD 368 (513)
T ss_pred CcccCCcccchhhccccccccceeecCcCCeEEEEEEcCCccC--CHHHHHHHHHHHHHhCCCeEEEcCCCCEEEeCCCH
Confidence 320 0 0 13477888 99999999999998553 5566666
Q ss_pred HHHHHHHHH
Q 005543 676 EVIRNFVAS 684 (691)
Q Consensus 676 ~~~~~~~~~ 684 (691)
+.+.+.+++
T Consensus 369 ~~v~~l~~~ 377 (513)
T PRK09566 369 ENLETFLAE 377 (513)
T ss_pred HHHHHHHHH
Confidence 666665554
No 16
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=100.00 E-value=6e-38 Score=336.92 Aligned_cols=210 Identities=19% Similarity=0.307 Sum_probs=190.8
Q ss_pred cCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcc-eE
Q 005543 420 GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNI-TA 497 (691)
Q Consensus 420 ~dG~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R-~v 497 (691)
+++.|++|+++|+ ++|++||+.||++|++||. .+|+|++|||+|++|+.+++++|+++|.++||.+.. .++.+| |+
T Consensus 27 ~~~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~~edl~~i~~~L~~~Gl~~~~-~G~~vrrni 104 (341)
T TIGR02066 27 GDVIYTVKAGTPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKIQPLIDELEEVGFPVGG-TGDAVKGNI 104 (341)
T ss_pred CCcEEEEEeCCCc-ccCHHHHHHHHHHHHHhCCCeEEEeccCCEEEecCCHHHHHHHHHHHHhccCCCCC-CCCcccccc
Confidence 4789999999999 9999999999999999998 799999999999999999999999999999998865 445455 99
Q ss_pred EecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEee--------------
Q 005543 498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD-------------- 563 (691)
Q Consensus 498 ~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~-------------- 563 (691)
++|||+++|+++++||.+++..|.+.|.+.+... .+|+||||+||||||+|++++++||||+|.
T Consensus 105 ~aC~G~~~C~~a~~dt~~l~~~l~~~l~~~~~~~--~lP~KfKI~vSGC~~~C~~~~~~Dig~~g~~~~~p~~~~~~~~~ 182 (341)
T TIGR02066 105 VHTQGWLHCHIPAIDASGIVKAVMDELYEYFTDH--KLPAMVRISLSCCANMCGGVHASDIAIVGIHRKPPKINHEAVRN 182 (341)
T ss_pred ccCcCCCCCCcchhchHHHHHHHHHHHHHHHhcc--cccccceeccccccccccchhhccccccccccCCcEEcHHHHHh
Confidence 9999999999999999999988888888877644 458999999999999999999999999983
Q ss_pred ---------------------------------------------------c-CceEEEEEcCcCC----Cccchhhhcc
Q 005543 564 ---------------------------------------------------G-PNSYQIWLGGTHN----QTTLARTFMN 587 (691)
Q Consensus 564 ---------------------------------------------------g-~~gy~I~lGG~~~----~~rla~~l~~ 587 (691)
+ ..||.||+||+.+ .|++|+.+..
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~vGG~~g~~~~~p~lg~~~~~ 262 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWVGGKLSNARVMPELSKVVVP 262 (341)
T ss_pred hcCCCceEeeCchhhceecccCCCCceeeccccCCcCCchHHhCchhhccCCCCCeEEEEEccccCccccCCcccceecc
Confidence 0 2579999999764 5899999998
Q ss_pred CCCh-----hhHHHHHHHHHHHHHHhcccCCCcHhHHHHhhCHHHHHHHHHh
Q 005543 588 KVKV-----QELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEK 634 (691)
Q Consensus 588 ~v~~-----eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~ 634 (691)
+++. +++++++++++++|.+++++ +|||++|++|+|+++|++.+..
T Consensus 263 ~~~~~~~~~e~~~~~i~~i~~~~~~~~~~-~eR~g~~i~RvG~~~f~~~v~~ 313 (341)
T TIGR02066 263 WIPNNPPRWPELVAYVKKILEAWKANAKK-HERLIEWVERIGWERFFELVGL 313 (341)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHcCcC-CccHHHHHHHHhHHHHHHHHCC
Confidence 8887 79999999999999999999 9999999999999999999964
No 17
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.7e-37 Score=368.63 Aligned_cols=206 Identities=22% Similarity=0.337 Sum_probs=189.8
Q ss_pred CccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcce
Q 005543 123 AKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNV 202 (691)
Q Consensus 123 ~~~~~fmlRir~pgG~lt~~ql~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g~t~~a~GD~~RNV 202 (691)
.+++.||+|+|+|+|++|++||+.|+++|++||+|+++||||||||||||+++++++++++| ...|++ .++|+.+|||
T Consensus 549 qk~g~~~v~~~~~~G~lt~~ql~~la~ia~~yg~~~i~iT~~Q~i~l~gi~~~~l~~i~~~L-~~~gl~-~~~g~~~r~v 626 (785)
T TIGR02374 549 QKDGTYSVIPRMYGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDL-KMPGYE-HAYGKALRTV 626 (785)
T ss_pred ccCCceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEcCCceEEECCCCHHHHHHHHHHH-HhCCCC-CCCCCCccCc
Confidence 35689999999999999999999999999999999999999999999999999999999999 888876 8999999999
Q ss_pred ecCCCC-CchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCCC
Q 005543 203 LAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPR 281 (691)
Q Consensus 203 ~a~p~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPr 281 (691)
++||+. +|..+..|+++++.+|.+.+. ...+|+
T Consensus 627 ~aC~G~~~C~~g~~ds~~la~~l~~~~~----------------------------------------------~~~~p~ 660 (785)
T TIGR02374 627 KTCVGSQWCRYGNQDSVQLAIQLERRYE----------------------------------------------GLRTPH 660 (785)
T ss_pred ccCCCccccCcchhhHHHHHHHHHHHhc----------------------------------------------ccCCCC
Confidence 999985 999999999999999876542 246999
Q ss_pred ceEEEEecCCCCCccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHH
Q 005543 282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVT 360 (691)
Q Consensus 282 KfKi~isg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ai~~~ 360 (691)
||||+|||||++|+.+.++||||++.. .||+|||||+.|+. |++|+.+. ++++|++++++++++++
T Consensus 661 k~ki~vSGC~~~C~~~~~~DiG~i~~~------~g~~v~vGG~~g~~-------~~~a~~l~~~~~~e~v~~~i~~~l~~ 727 (785)
T TIGR02374 661 KIKIGVSGCERECAEAAGKDVGVIATE------KGWNLYVGGNGGTH-------PRHGDLLAVDEDEETLIGYIDRFLQY 727 (785)
T ss_pred ceEEEEECCccccchhhhCcEEEEEec------CCeEEEECCcCCCC-------CcceeeecCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999864 48999999998864 89999987 78999999999999999
Q ss_pred HHHhCCCCcchhhhHHHHHHhhChhHHHHHHHH
Q 005543 361 QRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393 (691)
Q Consensus 361 ~rd~G~R~~R~~aRlk~li~~~G~e~f~e~le~ 393 (691)
|++++++ .+|++++++|||+++|++.+++
T Consensus 728 y~~~~~~----~er~~~~i~r~G~~~~~~~~~~ 756 (785)
T TIGR02374 728 YRETADY----LERTAPWLERLGIDHVREVLFE 756 (785)
T ss_pred HHHhCcc----cchHHHHHHHhChHHHHHHHHh
Confidence 9999875 5899999999999999999885
No 18
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=100.00 E-value=3.5e-37 Score=318.48 Aligned_cols=219 Identities=22% Similarity=0.393 Sum_probs=198.5
Q ss_pred cccceEeecCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCC
Q 005543 412 SHLGWHEQGDGGLFCGLHVDN-GRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRY 489 (691)
Q Consensus 412 d~~G~~~q~dG~~~v~i~vp~-Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~ 489 (691)
++.|+.++.+++|++|+++|. |.+++++|+.|++||++||. .|++|+||++.|++|+.++++++.++|++.||..++
T Consensus 18 ~~~Gvi~r~~~t~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L~~iG~~~G~- 96 (317)
T COG2221 18 VGYGVIKRRDGTYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIGLPVGS- 96 (317)
T ss_pred cCCceeeeccCcEEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHHHHcCCCCCC-
Confidence 788999999999999999987 99999999999999999999 799999999999999999999999999999999876
Q ss_pred CCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEee------
Q 005543 490 VDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD------ 563 (691)
Q Consensus 490 ~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~------ 563 (691)
.++.+|+++||+|..+|..|+.||.+++..|.+. +. +-+.|.||||.+|||||+|++++++||||+|.
T Consensus 97 ~G~~vr~i~aC~G~~~C~~a~~Dt~~la~~l~e~----f~--~~~~P~KfKI~vsGCPn~C~r~~~~DigivGv~~P~~~ 170 (317)
T COG2221 97 TGPAVRAIVACPGPRTCETALYDTTELARRLEEE----FL--EVPVPYKFKIAVSGCPNDCTRPQAHDIGIVGVWKPKVD 170 (317)
T ss_pred cchhhhhhhcCcCcccccccccChHHHHHHHHHH----hh--cCCCCceEEEEeecCCcccccccccceeEEEeecCccC
Confidence 6889999999999999999999999987655444 33 34568999999999999999999999999995
Q ss_pred --------------------------------------------------cCceEEEEEcCcCC--CccchhhhccCCCh
Q 005543 564 --------------------------------------------------GPNSYQIWLGGTHN--QTTLARTFMNKVKV 591 (691)
Q Consensus 564 --------------------------------------------------g~~gy~I~lGG~~~--~~rla~~l~~~v~~ 591 (691)
...+|.|+|||+.| .++.+.++....+.
T Consensus 171 ~E~c~gc~~cv~~C~~gAI~~~~~~l~id~~~Ci~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk~Gr~~~r~g~~~~~~~~~ 250 (317)
T COG2221 171 EELCRGCGKCVKVCPTGAITWDGKKLKIDGSKCIGCGKCIRACPKAAFRGEKVGIAILVGGKTGRELGRVGKPLVPVEDE 250 (317)
T ss_pred HHHhchhHhHHHhCCCCceeeccceEEEehhhccCccHHhhhCChhhcchhhccEEEEEccccCCccccccccccccCCH
Confidence 02479999999998 35999999998899
Q ss_pred hhHHHHHHHHHHHHHHhcccCCCcHhHHHHhhCHHHHHHHHHhHcC
Q 005543 592 QELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEG 637 (691)
Q Consensus 592 eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~ 637 (691)
+++.++++.++++|+++++..++|+++|++|+|+++|++.+.....
T Consensus 251 dei~~ii~~~~e~~~~~~~~~~~Rigd~I~r~G~~kF~e~i~~~~~ 296 (317)
T COG2221 251 DEIIDIIKKTIEVWREYAEKPGERIGDFIDRVGFEKFLEEILREVK 296 (317)
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHhHHHHHHHHHHhhc
Confidence 9999999999999999998646699999999999999999865543
No 19
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=100.00 E-value=1.6e-37 Score=332.38 Aligned_cols=228 Identities=19% Similarity=0.305 Sum_probs=198.0
Q ss_pred HHhhhhceeEeeccCCccCCccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHH
Q 005543 104 TQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRS 183 (691)
Q Consensus 104 ~~~~K~~G~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~ 183 (691)
...+|-.|++.|++++ .||+|+|+|+|++|++|++.|+++|++||+|++|||||||||||||+.++++++++.
T Consensus 4 ~~~~~~~~~~~~~~~g-------~~~vrv~~p~G~lt~~qlr~la~ia~~yg~g~~~~TtrQ~i~l~~i~~~~~~~v~~~ 76 (314)
T TIGR02912 4 TKALKKNAFRVTKVRG-------KTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNKA 76 (314)
T ss_pred HHHHhhCCeEEeecCC-------ceEEEEEccceecCHHHHHHHHHHHHHhCCCeEEEecccceEecCcCHHHHHHHHHH
Confidence 5678889999998764 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc----C-----CCCCCCCCCCcceecCCCC-CchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhh
Q 005543 184 IIRSM----G-----STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEV 253 (691)
Q Consensus 184 L~~~~----g-----~t~~a~GD~~RNV~a~p~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~ 253 (691)
| ++. + ...+.+|+.+|||++||+. .|..+..|+.+++.+|.+.+.
T Consensus 77 L-~~~~~gl~~~~~~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~------------------------ 131 (314)
T TIGR02912 77 L-QPIIEGLEINQEDVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIEKAVF------------------------ 131 (314)
T ss_pred H-HHHhhcccccccccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHHHHhh------------------------
Confidence 9 542 2 3456789999999999985 899999999999999876542
Q ss_pred hhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCccCccCCEEEEEEecC-----------------------
Q 005543 254 VKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE----------------------- 310 (691)
Q Consensus 254 ~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c~~~~~~DIg~v~~~~~----------------------- 310 (691)
.+|+||||+|||||++|..+..+||||++....
T Consensus 132 ------------------------~~~~k~ki~iSGCp~~C~~~~~~DiG~~g~~~~~~d~~~C~~Cg~C~~~Cp~~a~~ 187 (314)
T TIGR02912 132 ------------------------PNDYHVKIALTGCPNDCAKARMHDFGIIGMTEPQYDADRCIGCGACVKVCKKKAVG 187 (314)
T ss_pred ------------------------cCCceEEEEEeCCCchhhHHHHhhcccccccCCceeCccCCcchHHHHhcChhhcC
Confidence 257899999999999999999999999875210
Q ss_pred --------------------------------CCccceEEEEEcCCCCCcCCcccccCcccccc-CCCCHHHHHHHHHHH
Q 005543 311 --------------------------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL-GYVPKEDILYAVKAI 357 (691)
Q Consensus 311 --------------------------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l-~~v~~e~v~~~~~ai 357 (691)
.+...+|.+++||..|+.+ |+++..+ .+++.++++++++++
T Consensus 188 ai~~~~~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~~~~~v~~gg~~g~~~------p~~~~~~~~~~~~~~v~~~~~~~ 261 (314)
T TIGR02912 188 ALSFENYKVVRDHSKCIGCGECVLKCPTGAWTRSEEKYYKLRLMGRTGKKN------PRLGEDFIKWVDEDSIVKIILNT 261 (314)
T ss_pred ceeccCCeEEeCCCcCcCcchhhhhCCHhhcccCcCCcEEEEEcCccCCCC------cchhhhhhhhcCcchhHHHHHHH
Confidence 0112469999999998743 8888877 489999999999999
Q ss_pred HHHHHHhCCCCc-chhhhHHHHHHhhChhHHHHHHHH
Q 005543 358 VVTQRENGRRDD-RKYSRMKYLISSWGIEKFRSVVEQ 393 (691)
Q Consensus 358 ~~~~rd~G~R~~-R~~aRlk~li~~~G~e~f~e~le~ 393 (691)
+++|++|+++.+ |+++||+++|+|||+++|++++.+
T Consensus 262 ~~~~~~~~~~~~~~~~eR~~~~i~r~g~~~~~~~~~~ 298 (314)
T TIGR02912 262 YDYITEYIDKNAPGGKEHIGYIVDRTGYQEFKKWALK 298 (314)
T ss_pred HHHHHHHHhccCCCccchHHHHHHHhhHHHHHHHHhh
Confidence 999999988766 578999999999999999988754
No 20
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=100.00 E-value=8.1e-37 Score=333.10 Aligned_cols=269 Identities=18% Similarity=0.267 Sum_probs=218.1
Q ss_pred CChhhhhhhhcCCCc--------cchH----HhhhhcCCCCChhHHHhhhh-ceeEeecc--CCccCCccceEEEEEecC
Q 005543 71 RSKVEIIKEQSNFIR--------YPLN----EELLTDAPNVNESATQLIKF-HGSYQQYN--RDERGAKSYSFMLRTKNP 135 (691)
Q Consensus 71 ~~~~E~~K~~~~~l~--------~~~~----~~~~~~~~~~~~~~~~~~K~-~G~y~q~~--rd~r~~~~~~fmlRir~p 135 (691)
+|-|-.||+...+.. ..++ ..+.+..+++...-+..+.+ -|+|-|.. .|.=++..+.||+||++|
T Consensus 10 ps~v~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wkgg~v~v~gyg~GVigr~~~~~~~~p~~~~~~tvRv~~P 89 (402)
T TIGR02064 10 PSFVSEIKKTAAYRADYQVPVDPEDLLGVLELSYDERKTHWKGGIVSVFGYGGGVIGRYSDQGEKFPGVAEFHTVRVAQP 89 (402)
T ss_pred chHHHHHHHhccccccccccchhHHHHHHHhhhhhcCcccccCceEeeeecCCEEEEEecCCcccCCCcCeEEEEEEecC
Confidence 567777777654432 1122 22334457887555555554 67998833 233335567899999999
Q ss_pred CCc-cCHHHHHHHHHHHHHhCCCeEEecC-CCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCC-Cchh
Q 005543 136 CGK-VSNQLYLTMDDLADQFGIGTLRLTT-RQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAP-LVRK 212 (691)
Q Consensus 136 gG~-lt~~ql~~la~iA~~yG~g~l~lTt-RQ~iQl~gI~~~~l~~v~~~L~~~~g~t~~a~GD~~RNV~a~p~~-~~~~ 212 (691)
+|. +|++||+.|++||++||+|.+++|+ ||||+|+||+.+++++++++| .++|.+++++|+++||+++||++ .|..
T Consensus 90 ~G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~gv~~e~le~i~~eL-~~~G~dlggsG~~vRti~aC~G~~~C~~ 168 (402)
T TIGR02064 90 SGKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLGTQTPQLQEIFEEL-TNLGTDLGGSGSNLRTPESCVGPARCEF 168 (402)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcCCCHHHHHHHHHHH-hhcccCCCCCCCCccceecCCCcccCCC
Confidence 998 6999999999999999999999985 899999999999999999999 78898899999999999999986 9999
Q ss_pred hhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCC
Q 005543 213 DYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTD 292 (691)
Q Consensus 213 ~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~ 292 (691)
+..|+++++.+|.+.|.. . +....||+||||+|||||+
T Consensus 169 a~~DT~~l~~~L~~~~~~-------~-----------------------------------~~~~~lP~KfKI~vSGCpn 206 (402)
T TIGR02064 169 ACYDTLKACYELTMEYQD-------E-----------------------------------LHRPAFPYKFKFKFSGCPN 206 (402)
T ss_pred cccccHHHHHHHHHHHHh-------h-----------------------------------hhhccCCcccccccccccc
Confidence 999999999999887631 0 0123699999999999999
Q ss_pred CCccCc-cCCEEEEEEecC-------------------------------------C-----------------------
Q 005543 293 NSVDIL-TNDIGVVVVSDE-------------------------------------N----------------------- 311 (691)
Q Consensus 293 ~c~~~~-~~DIg~v~~~~~-------------------------------------~----------------------- 311 (691)
+|+.+. ++||||++.+++ +
T Consensus 207 ~C~~~~~~~DIG~iG~~r~~~~id~~~~~~~~~~cg~~~~~~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~ 286 (402)
T TIGR02064 207 DCVAAIARSDFAVIGTWKDDIKVDQEAVKAYIAGWGKFDIENEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKMPK 286 (402)
T ss_pred ccccceeccCceeeccccCCccccHHHHHHHHhhccccccchhHhhcCCccccccCCCceEEEcchhcCcCccccccCcc
Confidence 999999 999999986532 0
Q ss_pred ----CccceEEEEEcCCCCCcCCcccccCccccccC-CC----CHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhh
Q 005543 312 ----GEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YV----PKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSW 382 (691)
Q Consensus 312 ----g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v----~~e~v~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~ 382 (691)
|...||.|++||+.|.. ..|++++.+. |+ +.|++.+++++|+++|+++|. +++||+++|+|+
T Consensus 287 a~~~g~~~G~~ilvGGk~~~~-----~g~~lg~~~~~f~~~e~~~eei~~~i~~i~~~~~e~g~----~~ER~g~~i~R~ 357 (402)
T TIGR02064 287 ALHPGDERGVTILIGGKAPIL-----DGAQMGWVVVPFVEAEEPYDEIKELVEKIIDWWDEEGK----NRERIGETIKRL 357 (402)
T ss_pred cccCCCCCeEEEEEccCCCCC-----CCCcccceecccccCCCCHHHHHHHHHHHHHHHHHhCC----ccccHHHHHHHh
Confidence 12468999999998632 2389998885 77 568999999999999999985 579999999999
Q ss_pred ChhHHHHHH
Q 005543 383 GIEKFRSVV 391 (691)
Q Consensus 383 G~e~f~e~l 391 (691)
|+++|++.+
T Consensus 358 G~~~f~~~i 366 (402)
T TIGR02064 358 GLQKFLEVI 366 (402)
T ss_pred CHHHHHHHH
Confidence 999999886
No 21
>PLN02431 ferredoxin--nitrite reductase
Probab=100.00 E-value=5.3e-36 Score=342.06 Aligned_cols=272 Identities=14% Similarity=0.134 Sum_probs=228.1
Q ss_pred ccccceEee---cCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCC
Q 005543 411 KSHLGWHEQ---GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL--NVRITPNQNIILCDIRKAWKRPITTALAQAGLL 485 (691)
Q Consensus 411 ~d~~G~~~q---~dG~~~v~i~vp~Grita~ql~~LA~iAe~yg~--~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~ 485 (691)
-.|+|++.| .+|.|++||++|+|+||++|++.|++||++||. .++||+||||||+||+.+++++|++.|++.||.
T Consensus 121 ~kw~Gl~~~~~~~~~~fMlRvRiPgG~lt~~Qlr~la~ia~~yg~~G~i~iTtRqniQl~gI~~ed~p~i~~~L~~vGL~ 200 (587)
T PLN02431 121 LKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTRYLASVIEKYGEDGCADVTTRQNWQIRGVVLPDVPAILKGLEEVGLT 200 (587)
T ss_pred hhheeeeeecCCCCCceEEEEecCCcccCHHHHHHHHHHHHHhCCCCeEEEecCcceEeCCCCHHHHHHHHHHHHHcCCC
Confidence 467888866 368999999999999999999999999999993 699999999999999999999999999999999
Q ss_pred CCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHH-hcC-CCCCCceEEEEEcCCCCCCCcccccEEEEee
Q 005543 486 LPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFE-KVG-LKYNESVVIRVTGCPNGCARPYMAELGLVGD 563 (691)
Q Consensus 486 ~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~-~~g-l~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~ 563 (691)
+..++++.+||+++||+++.|+.++.||.+++.+|.+++...+. ... -.+|+||||.||||++.|+.++++||||++.
T Consensus 201 t~~a~gd~vRNI~~~P~aG~~~~e~~Dt~pla~~l~~~~~~~~~~~~~~~~LPrKfkiavsG~~~~~~~~~~nDigf~~~ 280 (587)
T PLN02431 201 SLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSDYITNNGRGNPEITNLPRKWNVCVVGSHDLFEHPHINDLAYMPA 280 (587)
T ss_pred chhccCCCCCCcccCCCCCCCccccccHHHHHHHHHHHhhhcccCCcccccCCCCeEEEEecCccccccccccceEEEEE
Confidence 99889999999999999999999999999999888877742111 101 1358999999999999999999999999996
Q ss_pred cC---ceEEEEEcCcCCCc--cchhhhccCCChhhHHHHHHHHHHHHHHhccc---CCCcHhHHHHhhCHHHHHHHHHhH
Q 005543 564 GP---NSYQIWLGGTHNQT--TLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKW 635 (691)
Q Consensus 564 g~---~gy~I~lGG~~~~~--rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~ 635 (691)
.. .||+|||||..+.. ..+..+..+|+++++++++++++++|++++.+ .+.|++.+++++|.++|++.++++
T Consensus 281 ~~~g~~Gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~v~~av~~~f~d~G~R~~R~kaRlk~li~~~G~e~f~~~v~~~ 360 (587)
T PLN02431 281 TKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVPADDVVPLCKAILEAFRDLGTRGNRQKTRMMWLIDELGVEGFRSEVEKR 360 (587)
T ss_pred EECCceEEEEEEeCCcCCCCccccchhhcccCHHHHHHHHHHHHHHHHHhCCccchhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 32 38999999988743 35556777899999999999999999998754 247999999999999999999765
Q ss_pred cCC------------c-------------c--------ccccccccccCcHHHHHHHHHHHHHhcc-----------chh
Q 005543 636 EGP------------A-------------K--------ATARYNLKLFADKETYEAVDELAKLQNK-----------NAH 671 (691)
Q Consensus 636 ~~~------------~-------------~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~ 671 (691)
.+. . . ....|.|+| +++++..|+++|+++|. .++
T Consensus 361 ~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~Qk~~G~~~v~v~vp~Grl--t~~qL~~LA~lA~~yG~g~irlT~~Qni~i~ 438 (587)
T PLN02431 361 MPNGELERAASEDLVDKKWERRDYLGVHPQKQEGLSYVGLHVPVGRL--QAADMDELARLADEYGSGELRLTVEQNIIIP 438 (587)
T ss_pred hccCCCCcccccccccchhcccceeEEEeeccCCeEEEEEEcCCCCC--CHHHHHHHHHHHHHhCCCeEEEcCCCCEEEC
Confidence 420 0 0 023577888 99999999999988553 566
Q ss_pred hhhHHHHHHHHHH
Q 005543 672 QLAIEVIRNFVAS 684 (691)
Q Consensus 672 ~~~~~~~~~~~~~ 684 (691)
.+..+.+.+.+++
T Consensus 439 ~V~~~~v~~l~~~ 451 (587)
T PLN02431 439 NVPNSKVEALLAE 451 (587)
T ss_pred CCCHHHHHHHHHH
Confidence 6777777666654
No 22
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.8e-36 Score=360.30 Aligned_cols=206 Identities=19% Similarity=0.294 Sum_probs=188.0
Q ss_pred CccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcc
Q 005543 123 AKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRN 201 (691)
Q Consensus 123 ~~~~~fmlRir~pgG~lt~~ql~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RN 201 (691)
.++++||+|+|+|+|++|++||+.|+++|++||. ++|||||||||||||+++++++++++| .++| .+.+++|+.+||
T Consensus 560 Qk~g~~~v~~~~p~G~lt~~ql~~ia~iA~kyg~-~~~iT~~Q~i~L~~i~~~~l~~v~~~L-~~~Gl~~~~~~g~~vr~ 637 (847)
T PRK14989 560 QKDGTYSVIPRSAGGEITPEGLMAVGRIAREFNL-YTKITGSQRIGLFGAQKDDLPEIWRQL-IEAGFETGHAYAKALRM 637 (847)
T ss_pred ccCCeEEEEEEcCCcEeCHHHHHHHHHHHHHHCC-cEEEcCCCceEeCCCCHHHHHHHHHHH-HHCCCCcCCCCCCCcCc
Confidence 4678999999999999999999999999999994 799999999999999999999999999 8888 555677899999
Q ss_pred eecCCCC-CchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCC
Q 005543 202 VLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP 280 (691)
Q Consensus 202 V~a~p~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LP 280 (691)
|++||+. +|+.+..|+.++|.+|.+++. ...+|
T Consensus 638 v~aC~G~~~C~~g~~dt~~la~~l~~~~~----------------------------------------------~~~~P 671 (847)
T PRK14989 638 AKTCVGSTWCRYGVGDSVGLGVELENRYK----------------------------------------------GIRTP 671 (847)
T ss_pred eeeCCCCCccccccccHHHHHHHHHHHhc----------------------------------------------cCCCC
Confidence 9999985 999999999999999877642 24689
Q ss_pred CceEEEEecCCCCCccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHH
Q 005543 281 RKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVV 359 (691)
Q Consensus 281 rKfKi~isg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ai~~ 359 (691)
+||||+|||||++|+.+.++||||++.. .||+||+||+.|++ |++|+.+. ++++|+++++++++++
T Consensus 672 ~k~ki~vSGC~~~C~~~~i~DiG~i~~~------~G~~v~vGG~~G~~-------~~~g~~l~~~~~~~~v~~~i~~~l~ 738 (847)
T PRK14989 672 HKMKFGVSGCTRECAEAQGKDVGIIATE------KGWNLYVCGNGGMK-------PRHADLLAADLDRETLIKYLDRFMM 738 (847)
T ss_pred CceEEEEeCCcccccccccccEEEEEec------CceEEEECCCCCCC-------CcceeeecCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999864 48999999999975 89999886 8999999999999999
Q ss_pred HHHHhCCCCcchhhhHHHHHHhh--ChhHHHHHHHH
Q 005543 360 TQRENGRRDDRKYSRMKYLISSW--GIEKFRSVVEQ 393 (691)
Q Consensus 360 ~~rd~G~R~~R~~aRlk~li~~~--G~e~f~e~le~ 393 (691)
+|+++|++ ++|+..+|+|+ |++.|++++.+
T Consensus 739 ~y~~~~~~----~er~~~~~~r~~~g~~~~~~~~~~ 770 (847)
T PRK14989 739 FYIRTADK----LQRTAVWLENLEGGIDYLKAVIID 770 (847)
T ss_pred HHHHhCcc----cccHHHHHHHhhchHHHHHHHHhc
Confidence 99999874 68999999999 99999988764
No 23
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=100.00 E-value=7.1e-36 Score=342.62 Aligned_cols=267 Identities=18% Similarity=0.186 Sum_probs=222.1
Q ss_pred ccccceEeecC---------------CcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHH
Q 005543 411 KSHLGWHEQGD---------------GGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRP 474 (691)
Q Consensus 411 ~d~~G~~~q~d---------------G~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~ 474 (691)
-.+.|++.|+| ..||+|+++|+|+||++|++.||+||++||+ .+++|+||||||+||+.+++++
T Consensus 48 lk~~G~y~q~~r~~r~~~~~~~~~~~~~fm~RvriP~G~lt~~Ql~~la~la~~yg~G~i~lTtRQniQL~gI~~~~l~~ 127 (569)
T PRK13504 48 LKFHGSYQQDDRDIRAERAEQKLEPAYQFMLRCRLPGGVITPQQWLALDKLADEYGNGTLRLTTRQTFQFHGILKKNLKP 127 (569)
T ss_pred HhheeeeEecchhhhhhhcccccCcCcceEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEecccceeecCCchHhHHH
Confidence 35688988863 3589999999999999999999999999998 7999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHH--------H--------------HhcC
Q 005543 475 ITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAV--------F--------------EKVG 532 (691)
Q Consensus 475 i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~--------l--------------~~~g 532 (691)
|++.|.+.||.+..++++.+|||++||+ ++|+.++.||..++.+|.+++... + ..++
T Consensus 128 i~~~L~~~gl~t~~a~gd~~RNV~~~p~-~~~~~~~~d~~~la~~l~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 206 (569)
T PRK13504 128 VIQTINSVLLDTLAACGDVNRNVMCTPN-PYESRLHAEAYEWAKKISDHLLPRTRAYAEIWLDGEKVATFSGTEEEPIYG 206 (569)
T ss_pred HHHHHHHcCCCcccccCCCCCceecCCC-cccccchHHHHHHHHHHHHHhccccchhHHhhhcCcccccccccccCcccc
Confidence 9999999999988888999999999996 699999999999998888766311 0 0011
Q ss_pred -CCCCCceEEEEEcCCCCCCCcccccEEEEeecC----ceEEEEEcCcCCC--------ccchhhhccCCChhhHHHHHH
Q 005543 533 -LKYNESVVIRVTGCPNGCARPYMAELGLVGDGP----NSYQIWLGGTHNQ--------TTLARTFMNKVKVQELEKVFE 599 (691)
Q Consensus 533 -l~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~----~gy~I~lGG~~~~--------~rla~~l~~~v~~eel~~~l~ 599 (691)
..+|+||||+|||||++|+.++++||||++... .||+|||||..|. |++|+.+. +|++++++++++
T Consensus 207 ~~~LPrKfKiavsgc~~~c~~~~~~DiG~~~~~~~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v~~~~~ 285 (569)
T PRK13504 207 KTYLPRKFKIAVAVPPDNDVDVYANDLGFVAIAENGKLVGFNVLVGGGMGMTHGDKETYPRLADELG-YVPPEDVLDVAE 285 (569)
T ss_pred cCCCCCceEEEEEcCCccccCceecceEEEEEecCCcEEEEEEEEEccccCCCCCCCCCCccccccC-ccCHHHHHHHHH
Confidence 136999999999999999999999999999732 3899999998762 68888885 899999999999
Q ss_pred HHHHHHHHhccc---CCCcHhHHHHhhCHHHHHHHHHhHcCCc-----c-----------------c-----cccccccc
Q 005543 600 PLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWEGPA-----K-----------------A-----TARYNLKL 649 (691)
Q Consensus 600 ~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~~~~-----~-----------------~-----~~~~~~~l 649 (691)
+++++|++++.+ .++||.++++++|.++|++.++++++.. + . ...+.|+|
T Consensus 286 ai~~~~~~~G~r~~r~~aRlk~lv~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~G~~~v~v~vp~Grl 365 (569)
T PRK13504 286 AVVTTQRDYGNRTDRKNARLKYTLERVGLDWFKAEVERRAGKKLEPARPYEFTGRGDRLGWVEGIDGKWHLTLFIENGRI 365 (569)
T ss_pred HHHHHHHHhCCcchhhHHHHHHHHHHHhHHHHHHHHHHHhcCccCCCCCCCccCccceeEEEecCCCcEEEEEEecCEEe
Confidence 999999998754 1479999999999999999998775421 0 0 12567888
Q ss_pred cCcHH----HHHHHHHHHHH----------hccchhhhhHHHHHHH
Q 005543 650 FADKE----TYEAVDELAKL----------QNKNAHQLAIEVIRNF 681 (691)
Q Consensus 650 ~~~~~----~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 681 (691)
+++ ++..|+++|++ |+..++.+..+.+.+.
T Consensus 366 --~~~~~~~~l~~La~iA~~yg~~irlT~~Qnl~l~~i~~~~~~~l 409 (569)
T PRK13504 366 --KDYPGRPLKTGLREIAKIHKGDFRLTANQNLIIANVPPSDKAKI 409 (569)
T ss_pred --cCCCcHHHHHHHHHHHHHhCCEEEEeCCCCEEEcCCCHHHHHHH
Confidence 777 99999999987 4445666656554433
No 24
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=100.00 E-value=3e-35 Score=323.59 Aligned_cols=255 Identities=15% Similarity=0.121 Sum_probs=213.5
Q ss_pred ecCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceE
Q 005543 419 QGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITA 497 (691)
Q Consensus 419 q~dG~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v 497 (691)
..|| |++|+++|+|+||++|+++|+++|++||. .||+|+||||||+||+.+ ++++++.|.+.||.+..+.++.+||+
T Consensus 14 ~~dg-~mvRvr~p~G~lt~~ql~~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l~~~GL~~~~~~g~~~Rnv 91 (390)
T TIGR02435 14 AGDG-LLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQALLAAGLGAAGAAADDIRNI 91 (390)
T ss_pred cCCe-eEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHHHHCCCCCccccCCccccc
Confidence 3455 79999999999999999999999999998 699999999999999999 99999999999999877788899999
Q ss_pred EecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecCc---eEEEEEcC
Q 005543 498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPN---SYQIWLGG 574 (691)
Q Consensus 498 ~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~---gy~I~lGG 574 (691)
++||++..|+.++.||++++.+|.+.+....... .+|+||||+||||+|+|++++++||||++...+ +|+|++||
T Consensus 92 ~~cp~~g~~~~~~~dt~~la~~l~~~l~~~~~~~--~LPrKfki~vsgc~~~c~~~~~~DIG~~~~~~~~~~gf~v~vGG 169 (390)
T TIGR02435 92 EVSPLAGIDPGEIADTRPLAAELRAALENERALL--ELPPKFSVAIDGGGRLVLLGDTADVRLQALTTGAGVAWVVSLAG 169 (390)
T ss_pred ccCccccCCCccccchHHHHHHHHHHHhcChhhh--cCCCceEEEEECCCccccCCCCCCEEEEEEecCCEEEEEEEEec
Confidence 9999999999999999999998888876543322 358999999999999999999999999997443 49999999
Q ss_pred cCCCccchhhhccCCChhhHHHHHHHHHHHHHHhcccCCCcHhHHHHhhCHHHHHHHHHhHcCC-----------c-c--
Q 005543 575 THNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGP-----------A-K-- 640 (691)
Q Consensus 575 ~~~~~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~~-----------~-~-- 640 (691)
..+..+ .+ .+|+++++++++++++++|++++. .+|++++++++|+|+|++.+++.... . .
T Consensus 170 ~~~~~~---~~-~~v~~~~v~~~v~av~~~~~~~g~--~aR~k~li~~~g~e~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (390)
T TIGR02435 170 ISTSAR---SL-VTVAPDAAVPVAVALLRVFVELGG--AARGRDLDDAFLFALALELVEDSRPLIPDAAEGEAPRPAVDA 243 (390)
T ss_pred CCCCCC---ce-EEeCHHHHHHHHHHHHHHHHHhCc--ccHHHHHHHHhHHHHHHHHHHhccccCCCccccccccCcccc
Confidence 654222 12 479999999999999999999876 58999999999999999998752110 0 0
Q ss_pred ----------------ccccccccccCcHHHHHHHHHHHHHhcc-----------chhhhhHHHHHHHHHHh
Q 005543 641 ----------------ATARYNLKLFADKETYEAVDELAKLQNK-----------NAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 641 ----------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 685 (691)
....|.|+| ++++++.|+++|+++|. .++.+..+.+.+..+..
T Consensus 244 ~~~~G~~~q~~~~~~v~~~~p~G~i--~~~~l~~la~ia~~~g~~~irlT~~Q~l~i~~i~~~~~~~~~~~l 313 (390)
T TIGR02435 244 AAPLGLHPQGDAGVTLGAGLALGQL--TAAQLRGLAQLAQALGDGDLRLTPWRALLVLGLPPERADAAQRAL 313 (390)
T ss_pred cCCCceeecCCCCeEEEEecCcccc--CHHHHHHHHHHHHHhCCCeEEEcCCcceEEcCCCHHHHHHHHHHH
Confidence 013477888 99999999999998653 56667666666555543
No 25
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=1.1e-34 Score=333.08 Aligned_cols=271 Identities=14% Similarity=0.141 Sum_probs=229.8
Q ss_pred ccccceEeecC--CcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCC
Q 005543 411 KSHLGWHEQGD--GGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLP 487 (691)
Q Consensus 411 ~d~~G~~~q~d--G~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~ 487 (691)
-.|+|++.|.. +.||+|+++|+|+||++|++.|++||++||. .++||+||||||+||+.++++++++.|.++||.+.
T Consensus 102 ~k~~G~y~~~~~~~~fM~RvripgG~lt~~Q~~~la~ia~~yg~g~~~lTTRq~iQlhgI~~~d~~~i~~~l~~~GL~t~ 181 (593)
T PRK09567 102 WKYHGLFYVAPAQDSYMCRLRIPNGILTHWQFAGLADLADRHGGGYSHVTTRANLQLREIPPEHAVPVLEGLVDLGLTAR 181 (593)
T ss_pred hccceEEEEcccCCeEEEEEEeCCeecCHHHHHHHHHHHHHHCCCeEEEeccccEEeccCCHHHHHHHHHHHHHCCCCCC
Confidence 46789987763 6899999999999999999999999999998 79999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecC--
Q 005543 488 RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP-- 565 (691)
Q Consensus 488 ~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~-- 565 (691)
.++++.+|||++||+++.|+.++.|+.+++.++.+.+....+..+ +|+||||.||||++.|+.+.++||||++...
T Consensus 182 ~a~gD~~RNV~~~P~ag~~~~e~~D~~~~a~~l~~~~~~~~~~~~--LPrKfkiaisg~~~~~~~~~~nDigf~a~~~~~ 259 (593)
T PRK09567 182 GSGADNIRNVTGSPTAGIDPQELLDTRPYAREWHHHILNDRSLYG--LPRKFNVAFDGGGRIATLEDTNDIGFQAVRVLE 259 (593)
T ss_pred CCCCCCCCCcCCCCCCCCChhhccchHHHHHHHHHHHhCCchhcC--CCCCeEEEEECCCcccccccccceeeEEEEecC
Confidence 899999999999999999999999999998888777643222234 5899999999999999999999999998521
Q ss_pred -------ceEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHHHHHHhccc---CCCcHhHHHHhhCHHHHHHHHHhH
Q 005543 566 -------NSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKW 635 (691)
Q Consensus 566 -------~gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~ 635 (691)
-+|+|++||..+...+|..+..+|+++++++++++++..|++++.+ .+.|++++++++|+|+|++.++++
T Consensus 260 g~~~~~g~gf~v~vGG~~g~~~~a~~~~~~v~~e~v~~~~~Ai~~~f~d~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~ 339 (593)
T PRK09567 260 GAGVAPGVYFRLVLGGITGHKDFARDTGVLLRPEEATAVADAIVRVFIENGDRTNRKKARLKYVLDAWGFDKFLEAVEEK 339 (593)
T ss_pred CccccccceEEEEEecccCCCcchhhhhccCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHHHHCHHHHHHHHHHH
Confidence 2699999998876667888877899999999999999999998753 368999999999999999999877
Q ss_pred cCCc-------------------------c---c-----cccccccccCcHHHHHHHHHHHHHhcc-----------chh
Q 005543 636 EGPA-------------------------K---A-----TARYNLKLFADKETYEAVDELAKLQNK-----------NAH 671 (691)
Q Consensus 636 ~~~~-------------------------~---~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~ 671 (691)
++.. . . ...|.|+| +++++..|+++|++++. .++
T Consensus 340 ~~~~l~~~~~~~~~~~~~~~~~~~~Gv~~Qkq~G~~~v~v~vp~Grl--t~~ql~~LA~iA~~yg~g~irlT~~Qni~l~ 417 (593)
T PRK09567 340 LGRPLTRVPAEAVAPRPAADRFAHVGVHPQKQPGLNWIGVVLPVGRL--TTDQMRGLAKIAARYGDGEIRLTVWQNLLIS 417 (593)
T ss_pred hcccccccchhhcCCCcchhccccceeeccCCCCceEEEEECCCCcc--CHHHHHHHHHHHHHhCCCEEEEeCCCCeEEc
Confidence 5310 0 0 12467888 99999999999998653 466
Q ss_pred hhhHHHHHHHHHHh
Q 005543 672 QLAIEVIRNFVASQ 685 (691)
Q Consensus 672 ~~~~~~~~~~~~~~ 685 (691)
.+..+.+.+..+..
T Consensus 418 ~V~~~~~~~l~~~L 431 (593)
T PRK09567 418 GVPDADVAAVEAAI 431 (593)
T ss_pred CCCHHHHHHHHHHH
Confidence 66666665555443
No 26
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=2.2e-34 Score=328.29 Aligned_cols=254 Identities=18% Similarity=0.173 Sum_probs=210.6
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecC
Q 005543 423 GLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACP 501 (691)
Q Consensus 423 ~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~ 501 (691)
.|++|+++|+|++|++|++.||+||++||. .++||+||||||+||+.++++++++.|.++||.+..++++.+|||+ |+
T Consensus 61 ~fmvRvripgG~lt~~Ql~~la~ia~~yg~g~i~lTtRQniQl~gI~~~~l~~v~~~L~~~GL~t~~a~gd~~RnV~-c~ 139 (541)
T TIGR02041 61 QFMLRCRLPGGVITPKQWLAIDKFAREYGNGSIRLTTRQTFQFHGILKRNLKAVHQAIHSAGLDSIATCGDVNRNVL-CT 139 (541)
T ss_pred eeEEEEecCCcEECHHHHHHHHHHHHHhCCCeEEEecccceEEcCCChhHHHHHHHHHHHcCCCccccCCCCCCcee-CC
Confidence 689999999999999999999999999998 7999999999999999999999999999999998888999999987 99
Q ss_pred CCCCCcchHHHHHhhHHHHHHHHHHH--------HH------------hcCC-CCCCceEEEEEcCCCCCCCcccccEEE
Q 005543 502 SLPLCPLAITEAERGIPDILKRIRAV--------FE------------KVGL-KYNESVVIRVTGCPNGCARPYMAELGL 560 (691)
Q Consensus 502 G~~~C~~ai~dt~~~a~~L~~~l~~~--------l~------------~~gl-~~p~k~kI~vSGCpn~Ca~~~~aDIG~ 560 (691)
+.|+|+++..|+..++.+|.+.+... ++ .++. .+|+||||+|||||++|+.++++||||
T Consensus 140 ~~p~~~~~~~e~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPrKfKi~isg~~~~~~~~~~~DiG~ 219 (541)
T TIGR02041 140 SNPYESELHQEAYEWAKKISEHLLPRTRAYHEIWLDEKKVAGTEEVEPIYGPTYLPRKFKTGVVIPPINDVDVYANDLGF 219 (541)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhccCchhHHHHhhhcccccCCcccCccccccCCCCCcEEEEECCCCccccccccceEE
Confidence 99999999999999888776643211 00 0111 279999999999999999999999999
Q ss_pred EeecC----ceEEEEEcCcCC--------CccchhhhccCCChhhHHHHHHHHHHHHHHhccc---CCCcHhHHHHhhCH
Q 005543 561 VGDGP----NSYQIWLGGTHN--------QTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGF 625 (691)
Q Consensus 561 vG~g~----~gy~I~lGG~~~--------~~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~ 625 (691)
++... .||+|||||..+ .|++|+.+. +|+++++++++++++++|++++.+ .+.||+++++++|+
T Consensus 220 ~a~~~~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v~~~~~ai~~~~~~~g~r~~r~~aRlk~li~~~G~ 298 (541)
T TIGR02041 220 VAIADNGKLIGFNVLIGGGLGMTHGNKATYPRLANEIG-FIPPEHTLAVAEAIVTTQRDFGNRTDRKNARTKYTIDRMGL 298 (541)
T ss_pred EEEEeCCcEEEEEEEEeccccCCCCCcCCCCccccccC-CCCHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHhCH
Confidence 99632 379999999865 278898885 999999999999999999998765 13689999999999
Q ss_pred HHHHHHHHhHcCCc----------------------cc-----cccccccccCc--HHHHHHHHHHHHH----------h
Q 005543 626 EKLQELVEKWEGPA----------------------KA-----TARYNLKLFAD--KETYEAVDELAKL----------Q 666 (691)
Q Consensus 626 e~~~~~l~~~~~~~----------------------~~-----~~~~~~~l~~~--~~~~~~~~~~~~~----------~ 666 (691)
++|++.++++.+.. .. ...|.|+|..+ +.++..|+++|+. |
T Consensus 299 e~f~~~v~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~G~~~v~v~~p~G~l~~~~~~~~l~~la~iA~~~~~~irlT~~Q 378 (541)
T TIGR02041 299 DTFKAEVERRAGITLEPARPYVFTHRGDRYGWVKGIDGNWHLTLFIESGRIADYPDKPLMTGLREIAKIHKGDFRITPNQ 378 (541)
T ss_pred HHHHHHHHHHhCCCCCCCCCccccccccccCeecCCCCcEEEEEEecCceeecCccHHHHHHHHHHHHhcCCeEEEeCCC
Confidence 99999997775321 00 23567888332 4588888888863 5
Q ss_pred ccchhhhhHHHH
Q 005543 667 NKNAHQLAIEVI 678 (691)
Q Consensus 667 ~~~~~~~~~~~~ 678 (691)
+..++.+..+.+
T Consensus 379 nl~l~~v~~~~~ 390 (541)
T TIGR02041 379 NLIIANVPEGGK 390 (541)
T ss_pred CEEEcCCCHHHH
Confidence 556777766633
No 27
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=100.00 E-value=1.5e-34 Score=315.26 Aligned_cols=207 Identities=16% Similarity=0.329 Sum_probs=188.1
Q ss_pred CcEEEEEEeCCCC-CCHHHHHHHHHHHHHhCC-eEEEcC-CCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEE
Q 005543 422 GGLFCGLHVDNGR-IAGKMKKTLREIIEKYNL-NVRITP-NQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAM 498 (691)
Q Consensus 422 G~~~v~i~vp~Gr-ita~ql~~LA~iAe~yg~-~irlT~-~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~ 498 (691)
+.|++|+++|.|. +|++||+.|++||++||. .+++|+ +|||+|++|+.+++++++++|.+.|+..+. .++.+|+++
T Consensus 80 ~~~tvRv~~P~G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~gv~~e~le~i~~eL~~~G~dlgg-sG~~vRti~ 158 (402)
T TIGR02064 80 EFHTVRVAQPSGKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLGTQTPQLQEIFEELTNLGTDLGG-SGSNLRTPE 158 (402)
T ss_pred eEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcCCCHHHHHHHHHHHhhcccCCCC-CCCCcccee
Confidence 6788999999999 599999999999999998 699985 899999999999999999999999998754 677789999
Q ss_pred ecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcc-cccEEEEee--------------
Q 005543 499 ACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPY-MAELGLVGD-------------- 563 (691)
Q Consensus 499 aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~-~aDIG~vG~-------------- 563 (691)
+|+|..+|++++.||..++..|.+.+.+.++... +|+||||+||||||+|++++ ++||||+|+
T Consensus 159 aC~G~~~C~~a~~DT~~l~~~L~~~~~~~~~~~~--lP~KfKI~vSGCpn~C~~~~~~~DIG~iG~~r~~~~id~~~~~~ 236 (402)
T TIGR02064 159 SCVGPARCEFACYDTLKACYELTMEYQDELHRPA--FPYKFKFKFSGCPNDCVAAIARSDFAVIGTWKDDIKVDQEAVKA 236 (402)
T ss_pred cCCCcccCCCcccccHHHHHHHHHHHHhhhhhcc--CCccccccccccccccccceeccCceeeccccCCccccHHHHHH
Confidence 9999999999999999999999998877665444 48999999999999999999 999999983
Q ss_pred -------------------------------------------------------cCceEEEEEcCcCC---Cccchhhh
Q 005543 564 -------------------------------------------------------GPNSYQIWLGGTHN---QTTLARTF 585 (691)
Q Consensus 564 -------------------------------------------------------g~~gy~I~lGG~~~---~~rla~~l 585 (691)
...||.|++||+.+ ++++|+.+
T Consensus 237 ~~~~cg~~~~~~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~a~~~g~~~G~~ilvGGk~~~~~g~~lg~~~ 316 (402)
T TIGR02064 237 YIAGWGKFDIENEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKMPKALHPGDERGVTILIGGKAPILDGAQMGWVV 316 (402)
T ss_pred HHhhccccccchhHhhcCCccccccCCCceEEEcchhcCcCccccccCcccccCCCCCeEEEEEccCCCCCCCCccccee
Confidence 03469999999985 48999999
Q ss_pred ccCC----ChhhHHHHHHHHHHHHHHhcccCCCcHhHHHHhhCHHHHHHHH
Q 005543 586 MNKV----KVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELV 632 (691)
Q Consensus 586 ~~~v----~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l 632 (691)
..++ +.+++.+++++++++|.++++. +|||++|++|+|+++|++.+
T Consensus 317 ~~f~~~e~~~eei~~~i~~i~~~~~e~g~~-~ER~g~~i~R~G~~~f~~~i 366 (402)
T TIGR02064 317 VPFVEAEEPYDEIKELVEKIIDWWDEEGKN-RERIGETIKRLGLQKFLEVI 366 (402)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHhCHHHHHHHH
Confidence 8887 6689999999999999999998 99999999999999999988
No 28
>PLN00178 sulfite reductase
Probab=100.00 E-value=9.3e-34 Score=325.63 Aligned_cols=269 Identities=16% Similarity=0.195 Sum_probs=225.8
Q ss_pred ccccceEeecC--------CcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHH
Q 005543 411 KSHLGWHEQGD--------GGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQ 481 (691)
Q Consensus 411 ~d~~G~~~q~d--------G~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~ 481 (691)
-.|+|++.|.| +.||+|+++|+|++|++|++.|++||++||+ .++||+||||||+||..++++++++.|.+
T Consensus 89 ~K~~G~y~q~~r~~r~~~~~~fMlRvriPgG~lt~~Q~~~la~iA~~yg~g~l~lTTRq~iQlhgI~~~dl~~i~~~L~~ 168 (623)
T PLN00178 89 IKFHGSYQQDNREKRGGKAYQFMLRTKQPAGKVPNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGVLKKDLKTVMSSIIK 168 (623)
T ss_pred hheeeeeeecCccccCCcCcceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEecccceEEcCCCHHHHHHHHHHHHH
Confidence 45789998853 5789999999999999999999999999998 79999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHH----------------------------------
Q 005543 482 AGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAV---------------------------------- 527 (691)
Q Consensus 482 ~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~---------------------------------- 527 (691)
.|+.+..++++.+|||++||. ++|...+.|+.+++.+|.++|...
T Consensus 169 ~gl~t~~a~gD~~RNV~~~p~-p~~~~e~~d~~~~a~~l~~~l~p~t~~y~e~~ld~~~~~~~~~~~v~~~~~~~~~~~~ 247 (623)
T PLN00178 169 NMGSTLGACGDVNRNVLAPAA-PFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARNDNSHGTN 247 (623)
T ss_pred cCCCcccccCCCCCCeecCCC-cCCchhhhhHHHHHHHHHHhhcccccchhhhhcccccccccccchhhhhhhccccccc
Confidence 999888889999999999995 789889999999998888765310
Q ss_pred HH-----hcC-CCCCCceEEEEEcCCCCCCCcccccEEEEeecC-----ceEEEEEcCcCCC--------ccchhhhccC
Q 005543 528 FE-----KVG-LKYNESVVIRVTGCPNGCARPYMAELGLVGDGP-----NSYQIWLGGTHNQ--------TTLARTFMNK 588 (691)
Q Consensus 528 l~-----~~g-l~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~-----~gy~I~lGG~~~~--------~rla~~l~~~ 588 (691)
+. .++ -.+|+||||.|||||++|..++++||||++... .||+|+|||..|. |++|..+. +
T Consensus 248 ~~~~~ep~yg~~~LPRKFKiavsg~~~n~~~~~~nDiG~~a~~~~~g~~~Gf~v~vGGg~g~~~~~~~t~pr~a~~l~-~ 326 (623)
T PLN00178 248 FEDSPEPIYGTQFLPRKFKIAVTVPGDNSVDILTNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLG-Y 326 (623)
T ss_pred ccCCccccccccCCCCCeEEEEecCccccccccccceEEEEEEeCCCcEeeEEEEEECccccCCCccCCCCccccccC-c
Confidence 00 011 137999999999999999999999999998532 3899999998762 78999986 9
Q ss_pred CChhhHHHHHHHHHHHHHHhccc---CCCcHhHHHHhhCHHHHHHHHHhHcCCc--c-----------------------
Q 005543 589 VKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWEGPA--K----------------------- 640 (691)
Q Consensus 589 v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~~~~--~----------------------- 640 (691)
|+++++++++++++.+|++++.+ .+.|++++++++|+++|++.++++++.. +
T Consensus 327 v~~e~v~~v~~av~~~~rd~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~~g~~~~~~~~~~~~~~~d~~G~~~q~dG~~ 406 (623)
T PLN00178 327 VPKEDILYAVKAIVATQRDYGRRDDRKQSRMKYLVHSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSYLGWHEQGDGKL 406 (623)
T ss_pred CCHHHHHHHHHHHHHHHHHhCcccchhhhHHHHHHHHHCHHHHHHHHHHHhcccccCCCCccccccccceeEEEccCCcE
Confidence 99999999999999999998764 2579999999999999999999886531 0
Q ss_pred --ccccccccccCcHHHHHHHHHHHHH----------hccchhhhhHHH---HHHHHH
Q 005543 641 --ATARYNLKLFADKETYEAVDELAKL----------QNKNAHQLAIEV---IRNFVA 683 (691)
Q Consensus 641 --~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~~~~~~ 683 (691)
....|.|+| .++++..|+++|++ |+..++.+..+. |.+.++
T Consensus 407 ~v~l~vp~Gri--t~~~l~~La~iAe~yg~~iRlT~~Qnlil~~I~~~~~~~i~~~L~ 462 (623)
T PLN00178 407 FYGVHVDNGRI--KGEAKKALREVIEKYNLPVRLTPNQNLILCDIRPAWKEPITAALA 462 (623)
T ss_pred EEEEecCCeec--CHHHHHHHHHHHHHhCCcEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 012577888 99999999999986 444666666654 444444
No 29
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=2.5e-33 Score=320.59 Aligned_cols=267 Identities=18% Similarity=0.173 Sum_probs=218.2
Q ss_pred ccccceEeecC-----------CcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHH
Q 005543 411 KSHLGWHEQGD-----------GGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTA 478 (691)
Q Consensus 411 ~d~~G~~~q~d-----------G~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~ 478 (691)
-.|+|++.|.| +.||+|+++|+|++|++|++.|++||++||. .++||+||||||+||+.++++++++.
T Consensus 42 lK~~G~y~q~~r~~r~~~~~~~~~fM~RiriPgG~lt~~q~~~ia~ia~~yg~g~~~iTtRq~iql~gi~~~~~~~~~~~ 121 (577)
T TIGR02042 42 LKFHGSYQQDNRDNRGKGQEKDYQFMLRTKNPGGYVPPQLYLTLDDLADEYGNGTLRATTRQTFQLHGILKKNLKTVIST 121 (577)
T ss_pred HhheeeeeecCccccccccCccceEEEEEecCCcccCHHHHHHHHHHHHHhCCCcEEEEcccceEeCCCCHHHHHHHHHH
Confidence 35789888743 2889999999999999999999999999998 69999999999999999999999999
Q ss_pred HHHCCCCCCCCCCCCcceEEecCCCCCCcc-hHHHHHhhHHHHHHHHH--------------------------H--H--
Q 005543 479 LAQAGLLLPRYVDPLNITAMACPSLPLCPL-AITEAERGIPDILKRIR--------------------------A--V-- 527 (691)
Q Consensus 479 L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~-ai~dt~~~a~~L~~~l~--------------------------~--~-- 527 (691)
|.+.|+.+..++++.+||||+||+ +.|.. .+.++..++.+|.+.|. . .
T Consensus 122 l~~~~l~t~~a~gd~~RNV~~~P~-~~~~~~~~~~~~~~a~~i~~~~~p~t~a~~e~~ld~~~~~~~~~~~~~~~~~~~~ 200 (577)
T TIGR02042 122 IVKNLGSTLGACGDLNRNVMAPPA-PFRKRPEYEFAREYADNIADLLTPQSGAYYELWLDGEKVMSAEPDPEVVAARNDN 200 (577)
T ss_pred HHHhCCCceeccCCCCCCeecCCC-ccccchhHHHHHHHHHHHHHhhcccccchhheecccccccccccchhhhhhhhcc
Confidence 999999888889999999999997 78987 67788887777766531 0 0
Q ss_pred ---------HH-hc-CCCCCCceEEEEEcCCCCCCCcccccEEEEeec----C-ceEEEEEcCcCC-C-------ccchh
Q 005543 528 ---------FE-KV-GLKYNESVVIRVTGCPNGCARPYMAELGLVGDG----P-NSYQIWLGGTHN-Q-------TTLAR 583 (691)
Q Consensus 528 ---------l~-~~-gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g----~-~gy~I~lGG~~~-~-------~rla~ 583 (691)
.+ .+ +..+|+||||.|||||++|+.++++||||++.. . .||+|||||..| . |++|.
T Consensus 201 ~~~~~~~~~~~~~~~~~~LPRKFKi~vsg~~~~~~~~~~nDlgf~a~~~~~g~~~Gf~v~vGGglg~~~~~~~t~p~~a~ 280 (577)
T TIGR02042 201 SHGTNFADSPEPLYGTQYLPRKFKIAVTVPGDNSIDLFTQDIGLVVVSNERGELEGFNIYVGGGMGRTHNKEETFARLAD 280 (577)
T ss_pred cccccccCCccccccccCCCCCceEEEEcCCCCcccceecceEEEEEEeCCCcEeeEEEEEecccCCCCCCccccchhcc
Confidence 00 01 124799999999999999999999999999752 1 389999999887 3 57888
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHhccc---CCCcHhHHHHhhCHHHHHHHHHhHcCCc--cc-----------------
Q 005543 584 TFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWEGPA--KA----------------- 641 (691)
Q Consensus 584 ~l~~~v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~~~~--~~----------------- 641 (691)
.+. +|+++++++++++++..|++++++ .+.|++++++++|+|+|++.++++++.. ..
T Consensus 281 ~l~-~v~~e~v~~~~~av~~~~rd~G~R~nR~~aRlk~li~~~G~e~f~~~ve~~~~~~~~~~~~~~~~~~~d~~G~~~q 359 (577)
T TIGR02042 281 PLG-YVPKEDIYYAVKAIVATQRDYGDRDDRRHARMKYLISDWGIEKFREVVEQYFGKKIAPVRELPEFEYKDYLGWHEQ 359 (577)
T ss_pred ccC-cCCHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHCHHHHHHHHHHHhccccCCcccCCcccccccceEEEC
Confidence 885 899999999999999999998653 3689999999999999999999886531 00
Q ss_pred --------cccccccccCcH--HHHHHHHHHHHH----------hccchhhhhHHHHH
Q 005543 642 --------TARYNLKLFADK--ETYEAVDELAKL----------QNKNAHQLAIEVIR 679 (691)
Q Consensus 642 --------~~~~~~~l~~~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 679 (691)
...|.|+|..+. ++.+.|+++|+. |+..++.+..+.+.
T Consensus 360 ~dG~~~v~l~vp~Grl~~~~~~~l~~~LaeIA~~yg~~irlT~~Qnl~l~~V~~~~~~ 417 (577)
T TIGR02042 360 GDGKWFLGLHIDSGRVKDDGNWQLKKALREIVEKYNLPVRLTPNQNIILYDIQPEWKR 417 (577)
T ss_pred CCceEEEEEEecCceecCCchHHHHHHHHHHHHHhCCCEEEcCCCCeEECCCCHHHHH
Confidence 235778883221 566899999986 44466666655543
No 30
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=7.9e-33 Score=310.59 Aligned_cols=281 Identities=21% Similarity=0.317 Sum_probs=241.8
Q ss_pred hhhhHHHHHHhhChhHHHHHHHHHhCCCC-----CCCCC-----------CC-----ccccccccceEeecCCcEEEEEE
Q 005543 371 KYSRMKYLISSWGIEKFRSVVEQYYGKKF-----EPFRQ-----------LP-----EWEFKSHLGWHEQGDGGLFCGLH 429 (691)
Q Consensus 371 ~~aRlk~li~~~G~e~f~e~le~~~g~~l-----~~~~~-----------~~-----~~~~~d~~G~~~q~dG~~~v~i~ 429 (691)
.+.-++.+|..-|+.+|.+++++. +++. .|+.. .+ ..+..+| .+.|+||+|++.++
T Consensus 482 ~~~~~~~~i~~~~~~~~~~v~~~~-~~~~gc~~c~pa~~~~l~~~~~~~~~~~~~s~~~~~~~h--aniqkdgTysvvPr 558 (793)
T COG1251 482 SRDEVVHLIRAKGLKTFPEVMNVL-GWKTGCAKCRPAINYYLASCWPDEYEDDEQSRLQNERDH--ANIQKDGTYSVVPR 558 (793)
T ss_pred CHHHHHHHHHHhccCCHHHHHHHh-cccCCcceechhhccceeeeccCccCcchhhhhhcccch--hhcccCCeEEEecc
Confidence 457788999999999999888764 3321 11100 00 0122345 67899999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcc
Q 005543 430 VDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPL 508 (691)
Q Consensus 430 vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ 508 (691)
+|+|++++++|++|+++|++||. .+++|..|.|-|.|++++++|++|+.|... ++++++...|.+.+|||+.||++
T Consensus 559 m~GG~~~~~~L~~Iadva~ky~l~~vK~Tg~Qri~l~G~k~edLp~~w~~l~~~---sg~ay~k~lrtvK~Cvg~~~Cr~ 635 (793)
T COG1251 559 MPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMA---SGHAYGKALRTVKTCVGSTFCRF 635 (793)
T ss_pred ccCcccCHHHHHHHHHHHHHhCcceeeccCCceeeecCCCcccchhHHHhcccc---chhHHHHhhhhHhhCCCcchhhh
Confidence 99999999999999999999999 589999999999999999999999988554 77888999999999999999999
Q ss_pred hHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecCceEEEEEcCcCC-Cccchhhhcc
Q 005543 509 AITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHN-QTTLARTFMN 587 (691)
Q Consensus 509 ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~-~~rla~~l~~ 587 (691)
+..||..+...|.+++ .+++.|+|+|+.+||||++|+.+.+.|+|++++ ..+|++|+||+.| .++.++++..
T Consensus 636 g~qds~~Lgi~le~~~------~gl~~P~k~k~~vSgCpr~CaEa~~KDvGii~t-~~G~~l~vgG~~g~~~r~a~~~~~ 708 (793)
T COG1251 636 GTQDSVGLGIRLEKRY------EGLRTPHKVKMAVSGCPRNCAEAGIKDVGIIGT-EKGWNLYVGGNGGMKPRHADLLAK 708 (793)
T ss_pred CccchhhHhHHHHHHh------ccCCCCcceeEeeccCCcccccccCcceEEEec-ccCceEEeccccCcchhhhhhhhh
Confidence 9999999877666654 378889999999999999999999999999998 8899999999998 8999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhcccCCCcHhHHHHhhCHHHHHHHHH-hHcCCccccccccccccCcHHHHHHHHHHHHHh
Q 005543 588 KVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVE-KWEGPAKATARYNLKLFADKETYEAVDELAKLQ 666 (691)
Q Consensus 588 ~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 666 (691)
..+.++++.++.+++++|++.+.. .||++.|++|+|++++++.+. +.+.... .+ ++.|+.....+ ++|
T Consensus 709 ~~~e~e~l~~i~~~~~~yr~~~~~-leR~~~wi~~~Gl~~~k~~v~~d~~~r~~-------~~--e~~~~~~~~~~-~~w 777 (793)
T COG1251 709 VLTEEEVLEYIDAFLQYYRETADY-LERTAPWLDRLGLEHIKEVVLDDPEGRKA-------LL--EREMFRLKFAQ-DPW 777 (793)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcchHHHHHHhhccHhHHHH-------HH--HHHHHHHHhcc-CcH
Confidence 999999999999999999999988 899999999999999999764 4444333 44 88899999999 999
Q ss_pred ccchhhhhH
Q 005543 667 NKNAHQLAI 675 (691)
Q Consensus 667 ~~~~~~~~~ 675 (691)
...+.++..
T Consensus 778 ~~~~~~~~~ 786 (793)
T COG1251 778 KETVEDPQA 786 (793)
T ss_pred HhhhcChhh
Confidence 999886644
No 31
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=100.00 E-value=3e-32 Score=291.66 Aligned_cols=214 Identities=24% Similarity=0.356 Sum_probs=182.4
Q ss_pred cceEeec-CCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHC--CCC--CC
Q 005543 414 LGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA--GLL--LP 487 (691)
Q Consensus 414 ~G~~~q~-dG~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~--Gl~--~~ 487 (691)
-|+..|+ +|.|++++++|+|++|++||+.||++|++||. .+|+|++|||+|++|+.++++++++.|++. |+. ..
T Consensus 10 ~~~~~~~~~g~~~vrv~~p~G~lt~~qlr~la~ia~~yg~g~~~~TtrQ~i~l~~i~~~~~~~v~~~L~~~~~gl~~~~~ 89 (314)
T TIGR02912 10 NAFRVTKVRGKTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNKALQPIIEGLEINQE 89 (314)
T ss_pred CCeEEeecCCceEEEEEccceecCHHHHHHHHHHHHHhCCCeEEEecccceEecCcCHHHHHHHHHHHHHHhhccccccc
Confidence 3778887 69999999999999999999999999999997 799999999999999999999999999853 332 11
Q ss_pred ----CCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEee
Q 005543 488 ----RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD 563 (691)
Q Consensus 488 ----~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~ 563 (691)
...++.+|++++|+|.++|++++.||+.++..|.+.+. +.|+||+|+||||||+|++++++||||+|.
T Consensus 90 ~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~--------~~~~k~ki~iSGCp~~C~~~~~~DiG~~g~ 161 (314)
T TIGR02912 90 DVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIEKAVF--------PNDYHVKIALTGCPNDCAKARMHDFGIIGM 161 (314)
T ss_pred ccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHHHHhh--------cCCceEEEEEeCCCchhhHHHHhhcccccc
Confidence 12456689999999999999999999998777655441 236799999999999999999999999884
Q ss_pred c------------------------------------------------------------CceEEEEEcCcCC--Cccc
Q 005543 564 G------------------------------------------------------------PNSYQIWLGGTHN--QTTL 581 (691)
Q Consensus 564 g------------------------------------------------------------~~gy~I~lGG~~~--~~rl 581 (691)
. ..+|.+++||..+ .+++
T Consensus 162 ~~~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~~~~~v~~gg~~g~~~p~~ 241 (314)
T TIGR02912 162 TEPQYDADRCIGCGACVKVCKKKAVGALSFENYKVVRDHSKCIGCGECVLKCPTGAWTRSEEKYYKLRLMGRTGKKNPRL 241 (314)
T ss_pred cCCceeCccCCcchHHHHhcChhhcCceeccCCeEEeCCCcCcCcchhhhhCCHhhcccCcCCcEEEEEcCccCCCCcch
Confidence 1 1358999999887 4889
Q ss_pred hhhhccCCChhhHHHHHHHHHHHHHHhc---c-cCCCcHhHHHHhhCHHHHHHHHHhH
Q 005543 582 ARTFMNKVKVQELEKVFEPLFYYWKQKR---Q-TKDESFGDFTNRMGFEKLQELVEKW 635 (691)
Q Consensus 582 a~~l~~~v~~eel~~~l~~ll~~y~~~~---~-~~~Erf~~~i~R~G~e~~~~~l~~~ 635 (691)
+..+...++.+++++++++++++|.++. . ..+|||++|++|+|+++|++.+.+.
T Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~eR~~~~i~r~g~~~~~~~~~~~ 299 (314)
T TIGR02912 242 GEDFIKWVDEDSIVKIILNTYDYITEYIDKNAPGGKEHIGYIVDRTGYQEFKKWALKD 299 (314)
T ss_pred hhhhhhhcCcchhHHHHHHHHHHHHHHHhccCCCccchHHHHHHHhhHHHHHHHHhhh
Confidence 9999999999999999999999987752 2 1279999999999999999887433
No 32
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5e-30 Score=286.40 Aligned_cols=271 Identities=18% Similarity=0.181 Sum_probs=221.5
Q ss_pred ccccceEee-cCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCC
Q 005543 411 KSHLGWHEQ-GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPR 488 (691)
Q Consensus 411 ~d~~G~~~q-~dG~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~ 488 (691)
..+.|++.| .++.||+|+++|+|.+|++|+++|++||++||. .+++|+||||||+||..++++++++.|.+.|+.+.+
T Consensus 44 ~~~~G~y~q~~~~~~MlRvriPgG~ls~~q~r~l~~iA~~yg~g~~~iTtRQniQ~hgI~~~d~~~i~~~l~~vgl~ti~ 123 (510)
T COG0155 44 LKFDGLYLQEPDHAFMLRVRIPGGILSPKQLRALADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAELASVGLHTIA 123 (510)
T ss_pred HhhcceeecccccceeEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEeecccceecccccccHHHHHHHHHHcCCcchh
Confidence 357799988 578999999999999999999999999999999 799999999999999999999999999999999988
Q ss_pred CCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecC---
Q 005543 489 YVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP--- 565 (691)
Q Consensus 489 ~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~--- 565 (691)
.+++..||++++|-++...-.+.|...++..+...+...-.. ..+|+||||.|+|||.+|...+++||||++...
T Consensus 124 ~~gd~~Rnv~~~P~ag~~~~ei~D~r~~~~~~~~~l~~~~~~--~~LPRKFkiav~g~~~~~v~~~~~Di~~~a~~~~~~ 201 (510)
T COG0155 124 TAGDVARNVTGDPLAGLDADEIADPRPLAEILRIWLDGEKGF--AYLPRKFKIAVDGGPDNDVDVLINDIGFVAIKENDG 201 (510)
T ss_pred hccccccceecCcccccchhhcccchhHHHHHHHHhcCccch--hcCCcceEEEEecCcccchhhhccceeEEEecccCC
Confidence 899999999888887777777888875443333333221111 236899999999999999999999999999732
Q ss_pred -ceEEEEEcCcCC-C-ccchhhhccCCChhhHHHHHHHHHHHHHHhccc---CCCcHhHHHHhhCHHHHHHHHHhHcCCc
Q 005543 566 -NSYQIWLGGTHN-Q-TTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWEGPA 639 (691)
Q Consensus 566 -~gy~I~lGG~~~-~-~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~~~~ 639 (691)
.||+++|||..+ . +..+..+...|+.+++.+++++++..|++++.+ .+.|+..+++++|.|+|++.++.+.+..
T Consensus 202 ~~Gf~v~VGGglg~~~~~~~~~~~~~v~~~~~~~~~~aiv~~~~d~G~R~nr~~aR~k~lv~~~G~E~f~~~ve~~~g~~ 281 (510)
T COG0155 202 LLGFNVLVGGGLGRTHPKTAPRLAEFVPPEDVLEVVEAIVRVYRDYGRRANRKKARLKYLVEALGVEKFRREVEPRLGKP 281 (510)
T ss_pred ccceEEEEccccccCCcchhhHHhhccCHHHHHHHHHHHHHHHHhcchhhhhhhhhHHHHHHHhChHHHHHHHHHhhCcc
Confidence 389999999988 4 679999999999999999999999999997643 3789999999999999999999876521
Q ss_pred --c-------------------------ccccccccccCcHHHHHHHHHHHHH-----------hccchhhhhHHHHHHH
Q 005543 640 --K-------------------------ATARYNLKLFADKETYEAVDELAKL-----------QNKNAHQLAIEVIRNF 681 (691)
Q Consensus 640 --~-------------------------~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 681 (691)
. ....+.||| .++-...+++.+.+ ||..+++++.+.+.+-
T Consensus 282 ~~~~~~~~~~~~~d~~Gw~~~~~g~~~~g~~v~~Grl--~~~~~~~l~~~~~~~~~~eiRlT~~QnLii~~v~~~~~~~i 359 (510)
T COG0155 282 FEPARPREFTGNGDHIGWVPQKDGLWHLGLAVPNGRL--KAEGLIPLATEAEEIGFGEIRLTPNQNLIIPNVPEAELEAI 359 (510)
T ss_pred cCccccccccCCCCceeEEEcCCCcEEEEEecceeee--cCccchHHHHHHHHHhhccEEeccCcceEecCCCHHHHHHH
Confidence 0 034677788 55554445544443 6777888877766665
Q ss_pred HHHh
Q 005543 682 VASQ 685 (691)
Q Consensus 682 ~~~~ 685 (691)
.+..
T Consensus 360 ~~~l 363 (510)
T COG0155 360 LRIL 363 (510)
T ss_pred HHHH
Confidence 5443
No 33
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=99.96 E-value=2.5e-29 Score=242.95 Aligned_cols=153 Identities=41% Similarity=0.684 Sum_probs=128.2
Q ss_pred CCCCCcceecCCCC-CchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCC
Q 005543 195 CGDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPI 273 (691)
Q Consensus 195 ~GD~~RNV~a~p~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~ 273 (691)
.||.+|||++||+. +|..++.|+.+++.+|.++|.. .
T Consensus 1 ~g~~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~------------------------------------------~ 38 (157)
T PF01077_consen 1 SGDTVRNVTACPGSGFCPLALIDTKPLARELEDYLEE------------------------------------------R 38 (157)
T ss_dssp -SSSBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHH------------------------------------------H
T ss_pred CCCCCcccccCCChhhCchHHhCHHHHhhHhhhcccc------------------------------------------c
Confidence 38999999999985 9999999999999999977631 1
Q ss_pred cCCCCCCCceEEEEecCCCCCccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC---CCCHHHH
Q 005543 274 YGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG---YVPKEDI 350 (691)
Q Consensus 274 yg~~~LPrKfKi~isg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~---~v~~e~v 350 (691)
|....||+||||+|||||++|+.+.++||||+++..+.+. .||+|+|||++|++ |+++..+. +++.|++
T Consensus 39 ~~~~~lp~k~kI~isGCpn~C~~~~i~DIG~~g~~~~~~~-~g~~v~vGG~~g~~-------~~~~~~~~~~~~~~~ee~ 110 (157)
T PF01077_consen 39 FEDPNLPRKFKIAISGCPNSCARPQINDIGFIGVKKPNGE-EGFDVYVGGGLGRH-------PRLGRELALAGFVPEEEV 110 (157)
T ss_dssp HHCSCSSS-BEEEEESSTTSTTSGGGSSEEEEEEEESTCE-EEEEEEES-BESTS-------TBEBEEEEEEEEEEGGGH
T ss_pred ccccccccccccceeecccccccccccccccceeeecccc-ceeeeeecccccCC-------CCccceeeccccccHHHH
Confidence 2235799999999999999999999999999999876332 39999999999986 66666654 7899999
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhChhHHHHHHHHHhCCCC
Q 005543 351 LYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKF 399 (691)
Q Consensus 351 ~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G~e~f~e~le~~~g~~l 399 (691)
++++++++++|+ |++.+++++||+++|+|+|+++|+++|+++++++|
T Consensus 111 ~~~i~~il~~y~--~~~~~~~~er~~~~i~r~G~e~~~~~v~~~~~~~~ 157 (157)
T PF01077_consen 111 LEVIEAILEYYR--GNREARKKERFKDFIERLGFEKFREEVEERLGHKF 157 (157)
T ss_dssp HHHHHHHHHHHH--S-HSSGTT-SHHHHHHHHHHHHHHHHHHHTSCGG-
T ss_pred HHHHHHHHHHHH--HhccCCCCCCHHHHHHHHCHHHHHHHHHHHhCcCC
Confidence 999999999999 88888999999999999999999999999887653
No 34
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=99.95 E-value=1.1e-28 Score=238.43 Aligned_cols=144 Identities=29% Similarity=0.618 Sum_probs=126.8
Q ss_pred CCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecCc----
Q 005543 491 DPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPN---- 566 (691)
Q Consensus 491 ~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~---- 566 (691)
++.+||+++|||+++|++++.||.+++..|.+++...+... .+|+||||+||||||+|++++++||||+|....
T Consensus 2 g~~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~~~~~--~lp~k~kI~isGCpn~C~~~~i~DIG~~g~~~~~~~~ 79 (157)
T PF01077_consen 2 GDTVRNVTACPGSGFCPLALIDTKPLARELEDYLEERFEDP--NLPRKFKIAISGCPNSCARPQINDIGFIGVKKPNGEE 79 (157)
T ss_dssp SSSBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHHHHHCS--CSSS-BEEEEESSTTSTTSGGGSSEEEEEEEESTCEE
T ss_pred CCCCcccccCCChhhCchHHhCHHHHhhHhhhccccccccc--ccccccccceeecccccccccccccccceeeeccccc
Confidence 45689999999999999999999999999998888776544 458999999999999999999999999997431
Q ss_pred eEEEEEcCcCC-Cccchhhhc--cCCChhhHHHHHHHHHHHHH--HhcccCCCcHhHHHHhhCHHHHHHHHHhHcC
Q 005543 567 SYQIWLGGTHN-QTTLARTFM--NKVKVQELEKVFEPLFYYWK--QKRQTKDESFGDFTNRMGFEKLQELVEKWEG 637 (691)
Q Consensus 567 gy~I~lGG~~~-~~rla~~l~--~~v~~eel~~~l~~ll~~y~--~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~ 637 (691)
+|+||+||+.+ .++++..+. ..++.++++++++.++++|+ +++++ +|||++|++|+|+|+|++.++++++
T Consensus 80 g~~v~vGG~~g~~~~~~~~~~~~~~~~~ee~~~~i~~il~~y~~~~~~~~-~er~~~~i~r~G~e~~~~~v~~~~~ 154 (157)
T PF01077_consen 80 GFDVYVGGGLGRHPRLGRELALAGFVPEEEVLEVIEAILEYYRGNREARK-KERFKDFIERLGFEKFREEVEERLG 154 (157)
T ss_dssp EEEEEES-BESTSTBEBEEEEEEEEEEGGGHHHHHHHHHHHHHS-HSSGT-T-SHHHHHHHHHHHHHHHHHHHTSC
T ss_pred eeeeeecccccCCCCccceeeccccccHHHHHHHHHHHHHHHHHhccCCC-CCCHHHHHHHHCHHHHHHHHHHHhC
Confidence 89999999988 788998888 58899999999999999999 88888 9999999999999999999988875
No 35
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.91 E-value=5.3e-24 Score=239.82 Aligned_cols=204 Identities=24% Similarity=0.332 Sum_probs=182.7
Q ss_pred CccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcce
Q 005543 123 AKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNV 202 (691)
Q Consensus 123 ~~~~~fmlRir~pgG~lt~~ql~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g~t~~a~GD~~RNV 202 (691)
.++++|.++.|+|||.++|++|++|+++|++||..++.+|.-|.|-|.|++++||+++|..|... +..+-|-..|.|
T Consensus 548 qkdgTysvvPrm~GG~~~~~~L~~Iadva~ky~l~~vK~Tg~Qri~l~G~k~edLp~~w~~l~~~---sg~ay~k~lrtv 624 (793)
T COG1251 548 QKDGTYSVVPRMPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMA---SGHAYGKALRTV 624 (793)
T ss_pred ccCCeEEEeccccCcccCHHHHHHHHHHHHHhCcceeeccCCceeeecCCCcccchhHHHhcccc---chhHHHHhhhhH
Confidence 45679999999999999999999999999999999999999999999999999999999998444 444566779999
Q ss_pred ecCCCC-CchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCCC
Q 005543 203 LAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPR 281 (691)
Q Consensus 203 ~a~p~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPr 281 (691)
..||+. +|.....|+..+..+|.+.+ ....+|.
T Consensus 625 K~Cvg~~~Cr~g~qds~~Lgi~le~~~----------------------------------------------~gl~~P~ 658 (793)
T COG1251 625 KTCVGSTFCRFGTQDSVGLGIRLEKRY----------------------------------------------EGLRTPH 658 (793)
T ss_pred hhCCCcchhhhCccchhhHhHHHHHHh----------------------------------------------ccCCCCc
Confidence 999986 99998999999999887653 2357999
Q ss_pred ceEEEEecCCCCCccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHH
Q 005543 282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVT 360 (691)
Q Consensus 282 KfKi~isg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ai~~~ 360 (691)
|+|+++||||.+|+.+.+.|+|++++. .||++|+||--|.+ |+.++.+. -.++|++++++.+++.+
T Consensus 659 k~k~~vSgCpr~CaEa~~KDvGii~t~------~G~~l~vgG~~g~~-------~r~a~~~~~~~~e~e~l~~i~~~~~~ 725 (793)
T COG1251 659 KVKMAVSGCPRNCAEAGIKDVGIIGTE------KGWNLYVGGNGGMK-------PRHADLLAKVLTEEEVLEYIDAFLQY 725 (793)
T ss_pred ceeEeeccCCcccccccCcceEEEecc------cCceEEeccccCcc-------hhhhhhhhhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999765 58999999987764 89999887 56999999999999999
Q ss_pred HHHhCCCCcchhhhHHHHHHhhChhHHHHHHH
Q 005543 361 QRENGRRDDRKYSRMKYLISSWGIEKFRSVVE 392 (691)
Q Consensus 361 ~rd~G~R~~R~~aRlk~li~~~G~e~f~e~le 392 (691)
||++++ +.+|+..+|+++|++.|++++.
T Consensus 726 yr~~~~----~leR~~~wi~~~Gl~~~k~~v~ 753 (793)
T COG1251 726 YRETAD----YLERTAPWLDRLGLEHIKEVVL 753 (793)
T ss_pred HHHHHH----HHHHHHHHhhhcchHHHHHHhh
Confidence 999986 5799999999999999998654
No 36
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.9e-21 Score=207.57 Aligned_cols=269 Identities=15% Similarity=0.149 Sum_probs=207.1
Q ss_pred cccceEeec-----CCc---EEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHC
Q 005543 412 SHLGWHEQG-----DGG---LFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA 482 (691)
Q Consensus 412 d~~G~~~q~-----dG~---~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~ 482 (691)
.++|++.|. +|+ ||+|.++|+|..|++|..++.+++++||+ .+++|+||++||+||-..+++.+.+-+...
T Consensus 118 KfhGiy~qddRd~r~gr~y~FM~R~klP~Gvtt~qq~l~lddls~k~G~gtlklTTRqtfQihGVlkknlk~~lrgi~kv 197 (638)
T KOG0560|consen 118 KFHGIYHQDDRDIRYGRSYSFMMRAKLPNGVTTPQQWLALDDLSDKYGNGTLKLTTRQTFQIHGVLKKNLKETLRGIAKV 197 (638)
T ss_pred HHhhhhhhcchhhhcchhhhhhheecCCCCCCCHHHHHHHHHHHHhhCCceeeeeeeceeeeeeeehhhhHHHHHHHHHH
Confidence 578998882 366 78999999999999999999999999999 699999999999999999999999999999
Q ss_pred CCCCCCCCCCCcceEEe--cCCCCCCcchHHHHHh-hHHHHH-------HHHH---HHHHh--------------cCC-C
Q 005543 483 GLLLPRYVDPLNITAMA--CPSLPLCPLAITEAER-GIPDIL-------KRIR---AVFEK--------------VGL-K 534 (691)
Q Consensus 483 Gl~~~~~~~~~~R~v~a--C~G~~~C~~ai~dt~~-~a~~L~-------~~l~---~~l~~--------------~gl-~ 534 (691)
++.+-+++++..||+++ -|-+......+.|+-. ++..|. +... +.++. +|- -
T Consensus 198 ~ltTL~a~gD~~RNv~~sa~P~~~kd~~qi~dt~k~is~~llP~T~~y~e~w~e~~q~ve~rkv~Gn~~~d~epiygpty 277 (638)
T KOG0560|consen 198 GLTTLGACGDVNRNVVGSANPINGKDHEQIVDTAKNISALLLPYTNLYHEFWTEGPQVVEARKVHGNADVDNEPIYGPTY 277 (638)
T ss_pred HhhhhhhhccccccccccCCCccccCHHHHHHHHHHHhhhhCCccchHHHHhhcCcHHhhhhccCCCcccccccccCccc
Confidence 99998899999999755 3333445666677632 111111 0000 00000 111 1
Q ss_pred CCCceEEEEEcCCCCCCCcccccEEEEeec----CceEEEEEcCcCCC--------ccchhhhccCCChhhHHHHHHHHH
Q 005543 535 YNESVVIRVTGCPNGCARPYMAELGLVGDG----PNSYQIWLGGTHNQ--------TTLARTFMNKVKVQELEKVFEPLF 602 (691)
Q Consensus 535 ~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g----~~gy~I~lGG~~~~--------~rla~~l~~~v~~eel~~~l~~ll 602 (691)
+|+|||+.|.+-|-+-..++.+|||++... ..||+|+|||..+. ||+|.++. +|+.|+|...+++++
T Consensus 278 LPRKfkv~Vavp~dn~vd~~tnDva~v~i~end~~~GfNv~VGGgmgtthr~ekt~prla~~~g-yVptddIl~~vkaIl 356 (638)
T KOG0560|consen 278 LPRKFKVCVAVPPDNDVDVLTNDVALVAINENDGVFGFNVLVGGGMGTTHRNEKTYPRLAELDG-YVPTDDILPLVKAIL 356 (638)
T ss_pred CccceeEEEecCCCccccccccceeEEEEeccCCceeeEEEeccccCCcccchhhccccccccc-ccchhhhHHHhhhhe
Confidence 699999999999999999999999999964 35899999997651 78887765 899999999999999
Q ss_pred HHHHHhccc---CCCcHhHHHHhhCHHHHHHHHHhHcCCc--cc---------------------------ccccccccc
Q 005543 603 YYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWEGPA--KA---------------------------TARYNLKLF 650 (691)
Q Consensus 603 ~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~~~~--~~---------------------------~~~~~~~l~ 650 (691)
..|++++.+ ...|+...++.+|.+.|++.+++|.+-. .+ .-.+.||+
T Consensus 357 i~qRd~G~R~nRk~aRmkylid~lGVe~Fr~~VEe~~g~KfE~~r~~~~~~we~~dyfGwh~q~~gl~f~glhVe~GRv- 435 (638)
T KOG0560|consen 357 IVQRDHGDRGNRKHARMKYLIDELGVEGFRTKVEEYMGKKFEPGRSEPNKQWERRDYFGWHKQEEGLSFVGLHVENGRV- 435 (638)
T ss_pred eeehhccCccchhhhhhhhhHHhhhhHHHHHHHHHHhcccCCcCcCCcchhhccccccccccCCCCceEEEEEcccccc-
Confidence 999999875 3678999999999999999999997631 00 12566788
Q ss_pred CcHHHHHHHHHHHHH-----------hccchhhhhHHHHHHHHH
Q 005543 651 ADKETYEAVDELAKL-----------QNKNAHQLAIEVIRNFVA 683 (691)
Q Consensus 651 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 683 (691)
++.+.......+.+ |+..+..+.++-.+..+.
T Consensus 436 -e~l~~ktglRev~e~~~~e~rlT~nQniii~nv~te~~~~i~~ 478 (638)
T KOG0560|consen 436 -EALDMKTGLREVAEYGSGELRLTVNQNIIIPNVETEKTEAILQ 478 (638)
T ss_pred -ccchhhhHHHHHHHhhcceeeecccccEEecccchhhhHHHHH
Confidence 77777664444433 555666777765555443
No 37
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=99.62 E-value=4.8e-16 Score=129.54 Aligned_cols=59 Identities=32% Similarity=0.644 Sum_probs=56.6
Q ss_pred ceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHH
Q 005543 126 YSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI 184 (691)
Q Consensus 126 ~~fmlRir~pgG~lt~~ql~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L 184 (691)
+.||+|+++|+|++|++|++.|+++|++||.|.+++|+||||+|+||+.+++++++++|
T Consensus 8 g~~~v~~~~~~G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L 66 (69)
T PF03460_consen 8 GFYMVRIRIPGGRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEEL 66 (69)
T ss_dssp TEEEEEEB-GGGEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHH
T ss_pred eEEEEEEeCCCEEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999
No 38
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=99.49 E-value=4e-14 Score=118.00 Aligned_cols=66 Identities=32% Similarity=0.454 Sum_probs=60.6
Q ss_pred EeecCC--cEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHC
Q 005543 417 HEQGDG--GLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA 482 (691)
Q Consensus 417 ~~q~dG--~~~v~i~vp~Grita~ql~~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~ 482 (691)
|+|+|| .|++++++|+|++++++++.|+++|++||. .||+|++|||+|+||+.+++++|++.|+++
T Consensus 1 ~~qk~~~g~~~v~~~~~~G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~~ 69 (69)
T PF03460_consen 1 HPQKDGDGFYMVRIRIPGGRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKEA 69 (69)
T ss_dssp EECTTSTTEEEEEEB-GGGEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHHT
T ss_pred CCCCcCCeEEEEEEeCCCEEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHcC
Confidence 578874 489999999999999999999999999996 799999999999999999999999999874
No 39
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=99.41 E-value=2.3e-12 Score=136.36 Aligned_cols=156 Identities=19% Similarity=0.351 Sum_probs=120.6
Q ss_pred ccccccceEeecCCcEEEEEEeCCCCCCHHHHHHHHHHH-HHhCCeEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCC
Q 005543 409 EFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREII-EKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLP 487 (691)
Q Consensus 409 ~~~d~~G~~~q~dG~~~v~i~vp~Grita~ql~~LA~iA-e~yg~~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~ 487 (691)
+++-|+|+.+.+.+ ..|.+...- .|.-+. +--|..||++ |.+-+.+++..-++.|+..||...
T Consensus 201 dyPLHlGvTEAG~~--------~~G~iKSa~--gig~LL~~GIGDTiRVS------Lt~~P~~EV~va~~IL~slglr~~ 264 (360)
T PRK00366 201 DYPLHLGVTEAGMG--------FKGTVKSAA--GLGALLQEGIGDTIRVS------LTADPVEEVKVGQEILQSLGLRSR 264 (360)
T ss_pred CCCceecccCCCCC--------CCceehhHH--HHHHHHHhcCCCeEEEe------CCCCCHHHHHHHHHHHHHcCCccC
Confidence 46679999998765 457775542 233332 3345578888 556678889999999999999753
Q ss_pred CCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcC-CCCCCCcccccEEEEeecCc
Q 005543 488 RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPYMAELGLVGDGPN 566 (691)
Q Consensus 488 ~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGC-pn~Ca~~~~aDIG~vG~g~~ 566 (691)
. +++++||| |+.+..|+..++.++.+++. +.+ .++||+|+|| +|+|+.++.+|||+.|. .+
T Consensus 265 g------~~IisCPg---CgR~~~D~~~la~~vee~~~------~~~--~PlkIAVmGC~VNgpGEa~~aDIGIaG~-~~ 326 (360)
T PRK00366 265 G------PEVISCPT---CGRTEFDVIQELAEVEQRLE------HIK--MPLKVAVMGCVVNGPGEAKEADIGIAGG-NP 326 (360)
T ss_pred C------CeEEECCC---CCCCcccHHHHHHHHHHHhc------CCC--CCcEEEEeCCCCCCCCchhhCcEeEecC-CC
Confidence 2 57999998 99999999998877777653 343 3499999999 59999999999999995 77
Q ss_pred eEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHHHHHH
Q 005543 567 SYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQ 607 (691)
Q Consensus 567 gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y~~ 607 (691)
+|.||.||.. ...++.+++.+.+...++.|.+
T Consensus 327 ~~~vf~~Gk~---------v~kv~~~~~~~~l~~~i~~~~~ 358 (360)
T PRK00366 327 KGPVFVDGEK---------IKTLPEENIVEELEAEIEAYAE 358 (360)
T ss_pred ceEEEECCEE---------eeeeChHhHHHHHHHHHHHHHh
Confidence 8999999974 2368899988888888877754
No 40
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=98.40 E-value=1.5e-06 Score=92.74 Aligned_cols=109 Identities=18% Similarity=0.250 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhh
Q 005543 175 KDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVV 254 (691)
Q Consensus 175 ~~l~~v~~~L~~~~g~t~~a~GD~~RNV~a~p~~~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~ 254 (691)
+.++-.++-| +++|+-.. -+||++||+ |.....|+..++.++.+.|.
T Consensus 247 ~EV~va~~IL-~slglr~~-----g~~IisCPg--CgR~~~D~~~la~~vee~~~------------------------- 293 (360)
T PRK00366 247 EEVKVGQEIL-QSLGLRSR-----GPEVISCPT--CGRTEFDVIQELAEVEQRLE------------------------- 293 (360)
T ss_pred HHHHHHHHHH-HHcCCccC-----CCeEEECCC--CCCCcccHHHHHHHHHHHhc-------------------------
Confidence 3444444434 77774322 379999996 88888999999999987753
Q ss_pred hhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCC-CCCccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCccc
Q 005543 255 KARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPT-DNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET 333 (691)
Q Consensus 255 ~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~-~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~ 333 (691)
...+| |||||+||. ++|..+..+|||+.+ ...+|.||+||..
T Consensus 294 ---------------------~~~~P--lkIAVmGC~VNgpGEa~~aDIGIaG------~~~~~~vf~~Gk~-------- 336 (360)
T PRK00366 294 ---------------------HIKMP--LKVAVMGCVVNGPGEAKEADIGIAG------GNPKGPVFVDGEK-------- 336 (360)
T ss_pred ---------------------CCCCC--cEEEEeCCCCCCCCchhhCcEeEec------CCCceEEEECCEE--------
Confidence 13466 999999995 999999999999984 3368999999863
Q ss_pred ccCccccccCCCCHHHHHHHHHHHHHHH
Q 005543 334 TFPRLGEQLGYVPKEDILYAVKAIVVTQ 361 (691)
Q Consensus 334 t~p~~a~~l~~v~~e~v~~~~~ai~~~~ 361 (691)
+.-|+.+++++.+...++-|
T Consensus 337 --------v~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 337 --------IKTLPEENIVEELEAEIEAY 356 (360)
T ss_pred --------eeeeChHhHHHHHHHHHHHH
Confidence 23478888888777766544
No 41
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=98.40 E-value=2.4e-06 Score=90.57 Aligned_cols=151 Identities=22% Similarity=0.348 Sum_probs=107.9
Q ss_pred ccccccceEeecCCcEEEEEEeCCCCCCHHHHHHHHHHH-HHhCCeEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCC
Q 005543 409 EFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREII-EKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLP 487 (691)
Q Consensus 409 ~~~d~~G~~~q~dG~~~v~i~vp~Grita~ql~~LA~iA-e~yg~~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~ 487 (691)
+++-|+|+.+.+.+ ..|.+.+.- .|.-+. +--|..||++ |.+=+.+++..-++.|+..||...
T Consensus 192 dyPLHlGVTEAG~~--------~~G~IKSai--gig~LL~~GIGDTIRVS------LT~dP~~EV~va~~IL~slglr~~ 255 (346)
T TIGR00612 192 DYPLHLGVTEAGMG--------VKGIVKSSA--GIGILLARGIGDTIRVS------LTDDPTHEVPVAFEILQSLGLRAR 255 (346)
T ss_pred CCCceeccccCCCC--------CCchhHHHH--HHHHHHhhCCCCeEEEE------CCCCcHHHHHHHHHHHHHcCCCcC
Confidence 46679999998765 467776542 233332 3345578887 566678889999999999999753
Q ss_pred CCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCC-CCCCCcccccEEEEeecCc
Q 005543 488 RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCP-NGCARPYMAELGLVGDGPN 566 (691)
Q Consensus 488 ~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCp-n~Ca~~~~aDIG~vG~g~~ 566 (691)
. -+++|||. |+.--.|....+.++.+++. .+ +.+++|+|-||. |+-+.+..||||+.|.+.+
T Consensus 256 g------~~iiSCPt---CGR~~~dl~~~~~~ve~~l~------~~--~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g 318 (346)
T TIGR00612 256 G------VEIVACPS---CGRTGFDVEKVVRRVQEALF------HL--KTPLKVAVMGCVVNGPGEAKHADIGISGGGTG 318 (346)
T ss_pred C------CeEEECCC---CCCcCCCHHHHHHHHHHHHh------cC--CCCCEEEEECceecCCchhhccCeeeecCCCC
Confidence 2 35899985 55444566666666666553 22 356999999998 9999999999999996477
Q ss_pred eEEEEEcCcCCCccchhhhccCCChhhHHHHHHHH
Q 005543 567 SYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPL 601 (691)
Q Consensus 567 gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~l 601 (691)
.-.||..|.. ...++.+++.+.+...
T Consensus 319 ~~~lF~~G~~---------~~kv~~~~~~~~l~~~ 344 (346)
T TIGR00612 319 SAILFKRGKP---------KAKQPETDMADELIRL 344 (346)
T ss_pred ceEEEECCEE---------eEecCHHHHHHHHHHh
Confidence 7788888853 2368888877765543
No 42
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=98.35 E-value=7.4e-06 Score=86.34 Aligned_cols=161 Identities=22% Similarity=0.393 Sum_probs=118.6
Q ss_pred ccccccceEeecCCcEEEEEEeCCCCCCHHHHHHHHHH-HHHhCCeEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCC
Q 005543 409 EFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREI-IEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLP 487 (691)
Q Consensus 409 ~~~d~~G~~~q~dG~~~v~i~vp~Grita~ql~~LA~i-Ae~yg~~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~ 487 (691)
+++-|+|+.+.+.|. .|.+.+.- +|.-+ ++--|..||++ |.+=+.+++.--.+.|+..|+...
T Consensus 194 dyPLHLGvTEAG~~~--------~G~VkSa~--alg~LL~eGIGDTIRVS------Lt~~P~~EV~V~~eILqslglR~~ 257 (361)
T COG0821 194 DYPLHLGVTEAGMGF--------KGIVKSAA--ALGALLSEGIGDTIRVS------LTADPVEEVKVAQEILQSLGLRSR 257 (361)
T ss_pred CCCcccceecccCcc--------cceehHHH--HHHHHHHhcCCceEEEe------cCCCchhhhHHHHHHHHHhCcccc
Confidence 456799999988663 35554432 23333 33345578877 556668888888899999999753
Q ss_pred CCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCC-CCCCCcccccEEEEeecCc
Q 005543 488 RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCP-NGCARPYMAELGLVGDGPN 566 (691)
Q Consensus 488 ~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCp-n~Ca~~~~aDIG~vG~g~~ 566 (691)
. -+++||| +|+....|....+.++.+++. .+ ..+++|+|-||- |+-+....+|||+.|.+.+
T Consensus 258 ~------v~~iaCP---~CGR~~~dv~~~~~~~~~~~~------~~--~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~ 320 (361)
T COG0821 258 G------VEVIACP---TCGRTEFDVIQTLNEVEQRLE------HL--KTPLKVAVMGCVVNGPGEAKHADIGIAGGGKG 320 (361)
T ss_pred C------ceEEECC---CCCceeehHHHHHHHHHHHhh------cc--CCCceEEEEEeEecCCcchhccceeeecCCCC
Confidence 2 4689998 688888888776666665553 22 345999999997 9999999999999997667
Q ss_pred eEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHHHHHHhccc
Q 005543 567 SYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT 611 (691)
Q Consensus 567 gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~ 611 (691)
.-.+|++|.. ...++.+++.+-+..+++.|.+++.+
T Consensus 321 ~~~~f~~g~~---------~~~~~~~~~~eel~~~i~~~~~~~~~ 356 (361)
T COG0821 321 SGPVFVKGEI---------IKKLPEEDIVEELEALIEAYAEERDG 356 (361)
T ss_pred eeEEEECCeE---------EEecChhhHHHHHHHHHHHHHHHhhh
Confidence 7788888863 23588889999888899888877654
No 43
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=98.31 E-value=1.3e-06 Score=93.26 Aligned_cols=155 Identities=21% Similarity=0.339 Sum_probs=99.3
Q ss_pred cccccceEeecCCcEEEEEEeCCCCCCHHHHHHHHHH-HHHhCCeEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCC
Q 005543 410 FKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREI-IEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPR 488 (691)
Q Consensus 410 ~~d~~G~~~q~dG~~~v~i~vp~Grita~ql~~LA~i-Ae~yg~~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~ 488 (691)
++-|+|+.+.+.+. .|.+.+. ..|.-+ ++--|..||++ |.+=+.+++..-+..|+..|+....
T Consensus 202 yPLHLGvTEAG~~~--------~g~IkSs--igiG~LL~~GIGDTIRVS------Lt~~p~~EV~va~~IL~al~lR~~g 265 (359)
T PF04551_consen 202 YPLHLGVTEAGTGE--------DGTIKSS--IGIGALLLDGIGDTIRVS------LTGDPVEEVKVAFEILQALGLRKRG 265 (359)
T ss_dssp S-EEEEBSSEESCH--------HHHHHHH--HHHHHHHHTT--SEEEE-------ECSSCCCHHHHHHHHHHHTTSS-SS
T ss_pred CCeEEeecCCCCcc--------cchhHHH--HHHHHHHHcCCCCEEEEE------CCCCchHHHHHHHHHHHHhCcCcCC
Confidence 44577777665432 2444332 122222 23335579987 5566778889999999999997532
Q ss_pred CCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCC-CCCCCcccccEEEEeecCce
Q 005543 489 YVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCP-NGCARPYMAELGLVGDGPNS 567 (691)
Q Consensus 489 ~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCp-n~Ca~~~~aDIG~vG~g~~g 567 (691)
-+++||| +|+.-..|...++.++.+++.. + +.+++|+|-||. ||-+....||||+.|.|.+.
T Consensus 266 ------~~~ISCP---tCGRt~~Dl~~~~~~ie~~l~~------l--~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~ 328 (359)
T PF04551_consen 266 ------PEIISCP---TCGRTEFDLQELVAEIEERLKH------L--KKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGK 328 (359)
T ss_dssp -------EEEE-------TT--SHHHHHHHHHHHHCCC------H--HCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTC
T ss_pred ------ceeeeCC---CCCCccchHHHHHHHHHHHHhc------C--CCCceEEEEeeeecCCchhhhCceeeecCCCCe
Confidence 3589998 5776677777766666655532 2 357999999998 99999999999999777888
Q ss_pred EEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHHHH
Q 005543 568 YQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYW 605 (691)
Q Consensus 568 y~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y 605 (691)
..||.+|.. +...++.+++++.+..+++.|
T Consensus 329 ~~lf~~g~~--------v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 329 GILFKKGEV--------VKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp EEEECTTEE--------EEEE-CSTCHHHHHHHHHHHH
T ss_pred EEEEECCEE--------EEecCCHHHHHHHHHHHHHhh
Confidence 999999953 333459999998888888755
No 44
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=97.54 E-value=0.00027 Score=81.44 Aligned_cols=109 Identities=20% Similarity=0.367 Sum_probs=78.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCC-CCCCC
Q 005543 474 PITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCP-NGCAR 552 (691)
Q Consensus 474 ~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCp-n~Ca~ 552 (691)
--...|+..|+.... -..+|||| |+.-+.|-+..+.+|.++ ... + | .+||+|-||. ||-+.
T Consensus 617 ~~~~ILQ~~~~R~~k------te~isCPg---CGRT~~dlq~~~~~I~~~----~~h--l--~-GvkiavMGCIVNGPGE 678 (733)
T PLN02925 617 TSFGLLQGCRMRNTK------TEYVSCPS---CGRTLFDLQEVSAEIREK----TSH--L--P-GVSIAIMGCIVNGPGE 678 (733)
T ss_pred HHHHHHHHhCccccC------CeEEECCC---CCCccccHHHHHHHHHHH----hhc--C--C-CceEEEEeeeecCCcc
Confidence 345678888886532 24789996 877777755544444443 221 2 3 3899999998 99999
Q ss_pred cccccEEEEeecCceEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHHHHHHhccc
Q 005543 553 PYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT 611 (691)
Q Consensus 553 ~~~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~ 611 (691)
..-||+|+||.+++..++|+|-. .+...+|.+++.+-|..|+ ++++++
T Consensus 679 madAd~GyVG~gpgKI~LYvgKe--------cV~~nIpeeeAvd~LIeLI---Ke~G~W 726 (733)
T PLN02925 679 MADADFGYVGGAPGKIDLYVGKE--------VVKRGIAMEEATDALIQLI---KDHGRW 726 (733)
T ss_pred ccccccceeccCCCeeEEEecce--------ehhcCCCHHHHHHHHHHHH---HHcCcc
Confidence 99999999999999999999874 3455799988776655555 455554
No 45
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=97.13 E-value=0.0012 Score=74.86 Aligned_cols=108 Identities=22% Similarity=0.367 Sum_probs=76.4
Q ss_pred HHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCC-CCCCCc
Q 005543 475 ITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCP-NGCARP 553 (691)
Q Consensus 475 i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCp-n~Ca~~ 553 (691)
.+..|++.++.... -..+|||| |+.-+.|-+..+..|.++. .. + + .+||+|-||- ||-+..
T Consensus 494 af~ILQaaR~R~sK------te~isCP~---CgRtlfdlq~t~~~i~~~t----~H--l--~-g~kIaiMGCiVNGpGEm 555 (606)
T PRK00694 494 AFGTLQSAGVRLVK------TEYISCPG---CGRTLFDLLEVTQRIRERT----QH--L--P-GLKIAVMGCIVNGPGEM 555 (606)
T ss_pred HHHHHHHhcccccc------ceEEECCC---CCceeehHHHHHHHHHHHh----cc--C--C-CceEEEEEeEecCCccc
Confidence 34567777765422 34689986 7777777555444444432 11 2 2 5999999997 999999
Q ss_pred ccccEEEEeecCceEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHHHHHHhccc
Q 005543 554 YMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT 611 (691)
Q Consensus 554 ~~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y~~~~~~ 611 (691)
.-||+|++|.+++..++|+|-. .+...+|.+++.+-|..|+ ++++++
T Consensus 556 adAd~GyVG~gpgkI~LY~gKe--------cV~~nIPee~Avd~LI~LI---ke~G~W 602 (606)
T PRK00694 556 ADADFGFVGSKTGMIDLYVKHT--------CVKAHIPMENAEEELVQLL---KEHGVW 602 (606)
T ss_pred cccccceecCCCCeEEEEecce--------ehhcCCCHHHHHHHHHHHH---HHcCCc
Confidence 9999999999999999999873 3455789988776555554 566554
No 46
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=96.83 E-value=0.002 Score=73.50 Aligned_cols=102 Identities=20% Similarity=0.322 Sum_probs=74.2
Q ss_pred HHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCC-CCCCCcc
Q 005543 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCP-NGCARPY 554 (691)
Q Consensus 476 ~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCp-n~Ca~~~ 554 (691)
+..|+..++.... -.-+|||| |+.-+.|-+.....|.++.. -| ..+||+|-||- ||-+.--
T Consensus 503 f~ILQa~r~R~sK------TEyISCPs---CGRTLfDLq~tta~Ik~~t~------HL---kGlkI~IMGCIVNGPGEMA 564 (611)
T PRK02048 503 FGILQAGRLRTSK------TEYISCPG---CGRTLYDLQSTIARIKEATS------HL---KGLKIGIMGCIVNGPGEMA 564 (611)
T ss_pred HHHHHHhcccccc------ceEEECCC---CCcchhhHHHHHHHHHHHhC------CC---CCceEEEEEeEecCCchhh
Confidence 4567777665422 23589985 88888887665544444431 12 34999999997 9999999
Q ss_pred cccEEEEeecCceEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHH
Q 005543 555 MAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFY 603 (691)
Q Consensus 555 ~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~ 603 (691)
-||+|.||.|++..++|+|-. .+...+|.+++.+-+..|++
T Consensus 565 DADfGYVG~gpgkI~LY~gke--------~V~~nIp~e~Avd~Li~LIk 605 (611)
T PRK02048 565 DADYGYVGAGRGKISLYKQKE--------CVEKNIPEEEAVERLIELIK 605 (611)
T ss_pred hcccceecCCCCeEEEEeccE--------EEecCCCHHHHHHHHHHHHH
Confidence 999999999999999999874 34557999887766655554
No 47
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=94.95 E-value=0.065 Score=58.03 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=70.8
Q ss_pred CCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCC
Q 005543 171 GVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEP 250 (691)
Q Consensus 171 gI~~~~l~~v~~~L~~~~g~t~~a~GD~~RNV~a~p~~~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~ 250 (691)
+=+.+.++-.+.-| +++|+-... =++++|| .|..-.+|.++++.+|.+++.
T Consensus 243 ~~p~~EV~va~~IL-~al~lR~~g-----~~~ISCP--tCGRt~~Dl~~~~~~ie~~l~--------------------- 293 (359)
T PF04551_consen 243 GDPVEEVKVAFEIL-QALGLRKRG-----PEIISCP--TCGRTEFDLQELVAEIEERLK--------------------- 293 (359)
T ss_dssp SSCCCHHHHHHHHH-HHTTSS-SS------EEEE------TT--SHHHHHHHHHHHHCC---------------------
T ss_pred CCchHHHHHHHHHH-HHhCcCcCC-----ceeeeCC--CCCCccchHHHHHHHHHHHHh---------------------
Confidence 33344455444444 777753322 2799998 677778899999999987652
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCC-ccCccCCEEEEEEecCCCccceEEEEEcCCCCCcC
Q 005543 251 PEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS-VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTH 329 (691)
Q Consensus 251 ~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c-~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~ 329 (691)
.|+.-+||||=||.-|- ....-.|+|+++... ....+|.+|..
T Consensus 294 ---------------------------~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~-----g~~~lf~~g~~---- 337 (359)
T PF04551_consen 294 ---------------------------HLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGK-----GKGILFKKGEV---- 337 (359)
T ss_dssp ---------------------------CHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-T-----TCEEEECTTEE----
T ss_pred ---------------------------cCCCCceEEEEeeeecCCchhhhCceeeecCCC-----CeEEEEECCEE----
Confidence 47778999999998664 456789999995332 24688888753
Q ss_pred CcccccCccccccC-CCCHHHHHHHHHHHHHH
Q 005543 330 RLETTFPRLGEQLG-YVPKEDILYAVKAIVVT 360 (691)
Q Consensus 330 ~~~~t~p~~a~~l~-~v~~e~v~~~~~ai~~~ 360 (691)
+. .+++|++++.+..+++-
T Consensus 338 ------------v~k~~~ee~~vd~L~~~I~~ 357 (359)
T PF04551_consen 338 ------------VKKVIPEEEIVDELIELIEE 357 (359)
T ss_dssp ------------EEEE-CSTCHHHHHHHHHHH
T ss_pred ------------EEecCCHHHHHHHHHHHHHh
Confidence 22 34888888877777654
No 48
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=93.79 E-value=0.059 Score=63.93 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcCC
Q 005543 145 LTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGS 190 (691)
Q Consensus 145 ~~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g~ 190 (691)
-.|+++|++||+|+|++||||.+.|.||+.+|+++++++| .+.|.
T Consensus 278 ~~I~eiA~kyG~g~I~tt~r~~~elp~i~~~die~i~~~L-~~~gl 322 (731)
T cd01916 278 ADILEEAQKLGIPVIATNDKIMLGLPDVTDEDPDKIVEDL-VSGKI 322 (731)
T ss_pred ccHHHHHHHhCCCEEEechhhhcCCCCCccccHHHHHHHH-HhCCC
Confidence 3588999999999999999999999999999999999999 77764
No 49
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=92.52 E-value=0.62 Score=50.22 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=70.0
Q ss_pred cCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhh
Q 005543 174 KKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEV 253 (691)
Q Consensus 174 ~~~l~~v~~~L~~~~g~t~~a~GD~~RNV~a~p~~~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~ 253 (691)
.+.++..++-| +++|+-..+ =++++|| .|..-..|..+++.++.+.|.
T Consensus 237 ~~EV~va~~IL-~slglr~~g-----~~iiSCP--tCGR~~~dl~~~~~~ve~~l~------------------------ 284 (346)
T TIGR00612 237 THEVPVAFEIL-QSLGLRARG-----VEIVACP--SCGRTGFDVEKVVRRVQEALF------------------------ 284 (346)
T ss_pred HHHHHHHHHHH-HHcCCCcCC-----CeEEECC--CCCCcCCCHHHHHHHHHHHHh------------------------
Confidence 34444444444 777753322 3799998 566666788888998877653
Q ss_pred hhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCC-CccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcc
Q 005543 254 VKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDN-SVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLE 332 (691)
Q Consensus 254 ~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~-c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~ 332 (691)
.++.-+||+|=||.-| -..+.-.|||+.+.. .....||..|..
T Consensus 285 ------------------------~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg-----~g~~~lF~~G~~------- 328 (346)
T TIGR00612 285 ------------------------HLKTPLKVAVMGCVVNGPGEAKHADIGISGGG-----TGSAILFKRGKP------- 328 (346)
T ss_pred ------------------------cCCCCCEEEEECceecCCchhhccCeeeecCC-----CCceEEEECCEE-------
Confidence 2444599999999755 456678999998621 124567777643
Q ss_pred cccCccccccCCCCHHHHHHHHHHH
Q 005543 333 TTFPRLGEQLGYVPKEDILYAVKAI 357 (691)
Q Consensus 333 ~t~p~~a~~l~~v~~e~v~~~~~ai 357 (691)
+.-|+.+++++.+...
T Consensus 329 ---------~~kv~~~~~~~~l~~~ 344 (346)
T TIGR00612 329 ---------KAKQPETDMADELIRL 344 (346)
T ss_pred ---------eEecCHHHHHHHHHHh
Confidence 2357888887765543
No 50
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=92.27 E-value=3.3 Score=48.87 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=74.8
Q ss_pred cCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCC
Q 005543 170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAE 249 (691)
Q Consensus 170 ~gI~~~~l~~v~~~L~~~~g~t~~a~GD~~RNV~a~p~~~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~ 249 (691)
.|...+....+-..|.+++++-.. .-.+++|| .|...++|-++++.+|.++.
T Consensus 607 ~~~~~~~~~~~~~~ILQ~~~~R~~-----kte~isCP--gCGRT~~dlq~~~~~I~~~~--------------------- 658 (733)
T PLN02925 607 PDQDFDFLRNTSFGLLQGCRMRNT-----KTEYVSCP--SCGRTLFDLQEVSAEIREKT--------------------- 658 (733)
T ss_pred CCCCHHHHHHHHHHHHHHhCcccc-----CCeEEECC--CCCCccccHHHHHHHHHHHh---------------------
Confidence 333334444444445455553221 13578888 68778888899999887652
Q ss_pred ChhhhhhccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCC-ccCccCCEEEEEEecCCCccceEEEEEcCCCCCc
Q 005543 250 PPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS-VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRT 328 (691)
Q Consensus 250 ~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~~c-~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~ 328 (691)
..||. .||||=||.-|- ....-.|+|+|+... ...++|+|--
T Consensus 659 ---------------------------~hl~G-vkiavMGCIVNGPGEmadAd~GyVG~gp-----gKI~LYvgKe---- 701 (733)
T PLN02925 659 ---------------------------SHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAP-----GKIDLYVGKE---- 701 (733)
T ss_pred ---------------------------hcCCC-ceEEEEeeeecCCccccccccceeccCC-----CeeEEEecce----
Confidence 13554 599999997654 344568999997432 3578999832
Q ss_pred CCcccccCccccccC-CCCHHHHHHHHHHHHHHHHHhCC
Q 005543 329 HRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGR 366 (691)
Q Consensus 329 ~~~~~t~p~~a~~l~-~v~~e~v~~~~~ai~~~~rd~G~ 366 (691)
.+. -||.|++ ++.++++-+++|+
T Consensus 702 ------------cV~~nIpeeeA---vd~LIeLIKe~G~ 725 (733)
T PLN02925 702 ------------VVKRGIAMEEA---TDALIQLIKDHGR 725 (733)
T ss_pred ------------ehhcCCCHHHH---HHHHHHHHHHcCc
Confidence 111 4788887 5566666678875
No 51
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=90.68 E-value=2.2 Score=45.98 Aligned_cols=94 Identities=23% Similarity=0.270 Sum_probs=63.9
Q ss_pred cceecCCCCCchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCC
Q 005543 200 RNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFL 279 (691)
Q Consensus 200 RNV~a~p~~~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~L 279 (691)
=|+++|| .|....+|....++++.+.+. .+
T Consensus 259 v~~iaCP--~CGR~~~dv~~~~~~~~~~~~------------------------------------------------~~ 288 (361)
T COG0821 259 VEVIACP--TCGRTEFDVIQTLNEVEQRLE------------------------------------------------HL 288 (361)
T ss_pred ceEEECC--CCCceeehHHHHHHHHHHHhh------------------------------------------------cc
Confidence 3899998 677777788888888766542 23
Q ss_pred CCceEEEEecCCCC-CccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHH
Q 005543 280 PRKFKVAVTVPTDN-SVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIV 358 (691)
Q Consensus 280 PrKfKi~isg~~~~-c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~ 358 (691)
+-.+||+|=||--| -....-.|||+.+... ..--+|++|..-. -++.+++++-.++++
T Consensus 289 ~~pl~VAVMGCVVNGPGEak~AdiGia~~~~-----~~~~~f~~g~~~~----------------~~~~~~~~eel~~~i 347 (361)
T COG0821 289 KTPLKVAVMGCVVNGPGEAKHADIGIAGGGK-----GSGPVFVKGEIIK----------------KLPEEDIVEELEALI 347 (361)
T ss_pred CCCceEEEEEeEecCCcchhccceeeecCCC-----CeeEEEECCeEEE----------------ecChhhHHHHHHHHH
Confidence 44499999999755 4556789999986422 2235777775321 267777877777777
Q ss_pred HHHHHh
Q 005543 359 VTQREN 364 (691)
Q Consensus 359 ~~~rd~ 364 (691)
+-|-+.
T Consensus 348 ~~~~~~ 353 (361)
T COG0821 348 EAYAEE 353 (361)
T ss_pred HHHHHH
Confidence 665544
No 52
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=87.57 E-value=0.99 Score=32.83 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Q 005543 651 ADKETYEAVDELAKLQNKNAHQLAIEVIRNFVAS 684 (691)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (691)
+++++++.|+++|.+.|.+..++..++|..|+.+
T Consensus 6 l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 6 LPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 3999999999999999999999999999999875
No 53
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=86.18 E-value=0.79 Score=54.82 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHHcC
Q 005543 146 TMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG 189 (691)
Q Consensus 146 ~la~iA~~yG~g~l~lTtRQ~iQl~gI~~~~l~~v~~~L~~~~g 189 (691)
.|.++|++||.+.|..|+|+.+.|.||+.+|+++++++| .+.+
T Consensus 316 ~L~eiA~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L-~~~~ 358 (781)
T PRK00941 316 DILEEAKKLGIPVIATNDKICLGLPDRTDEDVDEIIEDL-VSGK 358 (781)
T ss_pred cHHHHHHHhCCCEEEecccccccCCCCCccCHHHHHHHH-HhCC
Confidence 478999999999999999999999999999999999999 5554
No 54
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=84.28 E-value=1.1 Score=53.64 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=40.9
Q ss_pred HHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCCC
Q 005543 442 TLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLL 485 (691)
Q Consensus 442 ~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~ 485 (691)
.|+++|++||. .|.+|++|.+.|++|+.+++++|.+.|.+.|+.
T Consensus 279 ~I~eiA~kyG~g~I~tt~r~~~elp~i~~~die~i~~~L~~~glp 323 (731)
T cd01916 279 DILEEAQKLGIPVIATNDKIMLGLPDVTDEDPDKIVEDLVSGKIP 323 (731)
T ss_pred cHHHHHHHhCCCEEEechhhhcCCCCCccccHHHHHHHHHhCCCC
Confidence 38999999999 699999999999999999999999999998853
No 55
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=83.03 E-value=2.3 Score=32.24 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=32.9
Q ss_pred cCcHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Q 005543 650 FADKETYEAVDELAKLQNKNAHQLAIEVIRNFVAS 684 (691)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (691)
.++.+++..|+.++.+-|.+.+++..+||+.|+++
T Consensus 8 ~l~~el~~~L~~ls~~t~i~~S~Ll~eAle~~l~k 42 (44)
T PF12651_consen 8 SLDKELYEKLKELSEETGIPKSKLLREALEDYLEK 42 (44)
T ss_pred ecCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 35999999999999999999999999999999976
No 56
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=82.93 E-value=4.4 Score=46.84 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=63.8
Q ss_pred cceecCCCCCchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCC
Q 005543 200 RNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFL 279 (691)
Q Consensus 200 RNV~a~p~~~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~L 279 (691)
-+.++|| .|...++|.++.+.+|.+.. ..|
T Consensus 508 te~isCP--~CgRtlfdlq~t~~~i~~~t------------------------------------------------~Hl 537 (606)
T PRK00694 508 TEYISCP--GCGRTLFDLLEVTQRIRERT------------------------------------------------QHL 537 (606)
T ss_pred ceEEECC--CCCceeehHHHHHHHHHHHh------------------------------------------------ccC
Confidence 3678898 68777888888888876542 246
Q ss_pred CCceEEEEecCCCCC-ccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHH
Q 005543 280 PRKFKVAVTVPTDNS-VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAI 357 (691)
Q Consensus 280 PrKfKi~isg~~~~c-~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ai 357 (691)
| -.||||=||--|- ....-.|+|+|+... ...++|+|=- .+. -||.|++ ++.+
T Consensus 538 ~-g~kIaiMGCiVNGpGEmadAd~GyVG~gp-----gkI~LY~gKe----------------cV~~nIPee~A---vd~L 592 (606)
T PRK00694 538 P-GLKIAVMGCIVNGPGEMADADFGFVGSKT-----GMIDLYVKHT----------------CVKAHIPMENA---EEEL 592 (606)
T ss_pred C-CceEEEEEeEecCCccccccccceecCCC-----CeEEEEecce----------------ehhcCCCHHHH---HHHH
Confidence 6 4999999997554 344568999997432 3578998731 111 4788887 5566
Q ss_pred HHHHHHhCC
Q 005543 358 VVTQRENGR 366 (691)
Q Consensus 358 ~~~~rd~G~ 366 (691)
+++-+++|+
T Consensus 593 I~LIke~G~ 601 (606)
T PRK00694 593 VQLLKEHGV 601 (606)
T ss_pred HHHHHHcCC
Confidence 666678875
No 57
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=78.97 E-value=6.7 Score=45.65 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=62.7
Q ss_pred ceecCCCCCchhhhHHHHHHHHHHHHhhCCCccccccccccccccccCCChhhhhhccCCCCCCCCCCCCCCCcCCCCCC
Q 005543 201 NVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP 280 (691)
Q Consensus 201 NV~a~p~~~~~~~~~d~~~la~~i~~~l~p~~~ay~~~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LP 280 (691)
.-++|| .|...++|-++...+|-+.. ..||
T Consensus 517 EyISCP--sCGRTLfDLq~tta~Ik~~t------------------------------------------------~HLk 546 (611)
T PRK02048 517 EYISCP--GCGRTLYDLQSTIARIKEAT------------------------------------------------SHLK 546 (611)
T ss_pred eEEECC--CCCcchhhHHHHHHHHHHHh------------------------------------------------CCCC
Confidence 356787 68888999999888886542 2477
Q ss_pred CceEEEEecCCCCCc-cCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHH
Q 005543 281 RKFKVAVTVPTDNSV-DILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIV 358 (691)
Q Consensus 281 rKfKi~isg~~~~c~-~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ai~ 358 (691)
. .||||=||--|-. ..-=.|.|.|+... ...++|+|-- .+. -||.|++ ++.++
T Consensus 547 G-lkI~IMGCIVNGPGEMADADfGYVG~gp-----gkI~LY~gke----------------~V~~nIp~e~A---vd~Li 601 (611)
T PRK02048 547 G-LKIGIMGCIVNGPGEMADADYGYVGAGR-----GKISLYKQKE----------------CVEKNIPEEEA---VERLI 601 (611)
T ss_pred C-ceEEEEEeEecCCchhhhcccceecCCC-----CeEEEEeccE----------------EEecCCCHHHH---HHHHH
Confidence 7 9999999976543 33457899986432 3578888732 111 4788887 55666
Q ss_pred HHHHHhCC
Q 005543 359 VTQRENGR 366 (691)
Q Consensus 359 ~~~rd~G~ 366 (691)
++-+++|+
T Consensus 602 ~LIk~~g~ 609 (611)
T PRK02048 602 ELIKANGD 609 (611)
T ss_pred HHHHHcCC
Confidence 66677774
No 58
>PHA01623 hypothetical protein
Probab=75.83 E-value=4.6 Score=32.37 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=33.0
Q ss_pred cCcHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Q 005543 650 FADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (691)
.++.+++..|+.|+..+|.+.+++..+||..|+...
T Consensus 19 rldeel~~~Ld~y~~~~g~~rSe~IreAI~~yL~~~ 54 (56)
T PHA01623 19 YMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQKR 54 (56)
T ss_pred EeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 349999999999999999999999999999999753
No 59
>PF09274 ParG: ParG; InterPro: IPR015354 This entry represents plasmid partition proteins; it adopts a ribbon-helix-helix fold, with a core of four alpha-helices. The proteins are an essential component of the DNA partition complex of the multi drug resistance plasmid TP228 []. ; PDB: 1P94_B.
Probab=73.22 E-value=2.7 Score=35.74 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=33.7
Q ss_pred cccccccCcHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Q 005543 644 RYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 644 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (691)
..+..++++++.+..++.++-.+|.+++|+..+.+.+|+.+.
T Consensus 34 ~Krvtv~i~EelH~r~K~~ca~~G~sisdvv~eLid~wL~en 75 (76)
T PF09274_consen 34 TKRVTVNIDEELHRRFKAACAKQGTSISDVVRELIDKWLKEN 75 (76)
T ss_dssp EEEE-EEEEHHHHHHHHHHHHHHT--HHHHHHHHHHHHHCC-
T ss_pred eEEEEEecCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcc
Confidence 344455679999999999999999999999999999999753
No 60
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=66.84 E-value=17 Score=33.05 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=34.7
Q ss_pred ccccccccCcHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Q 005543 643 ARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVAS 684 (691)
Q Consensus 643 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (691)
++-+.|+ +++++++++-.|..++.+|++.+.++|...+.+
T Consensus 71 Gkf~~Ri--~p~lH~~a~~aAa~qgiSLN~~v~~~L~~~v~~ 110 (111)
T COG4226 71 GKFNLRI--DPELHEAAALAAAAQGISLNTWVEEALNEAVNH 110 (111)
T ss_pred ceeeEec--CHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc
Confidence 3455677 999999999999999999999999999887654
No 61
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=66.41 E-value=7.3 Score=46.92 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=40.2
Q ss_pred HHHHHHHHhCC-eEEEcCCCcEEEccCCccCHHHHHHHHHHCCC
Q 005543 442 TLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGL 484 (691)
Q Consensus 442 ~LA~iAe~yg~-~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl 484 (691)
.|+++|++||. .|.+|+++.+.|++|+.+++++|.+.|.+.|+
T Consensus 316 ~L~eiA~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~ 359 (781)
T PRK00941 316 DILEEAKKLGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKI 359 (781)
T ss_pred cHHHHHHHhCCCEEEecccccccCCCCCccCHHHHHHHHHhCCC
Confidence 38899999999 69999999999999999999999999999884
No 62
>PHA00617 ribbon-helix-helix domain containing protein
Probab=64.54 E-value=11 Score=32.55 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Q 005543 651 ADKETYEAVDELAKLQNKNAHQLAIEVIRNFVAS 684 (691)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (691)
+++++.+.|+++|...|.+-.++..+||+.|+.+
T Consensus 46 Lp~eL~erLD~LA~~~GrsRSelIreAI~~YLee 79 (80)
T PHA00617 46 LPPELNAKLEQVAIKMKKSKSEIIREALEKYLEE 79 (80)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999999999864
No 63
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=57.97 E-value=11 Score=29.67 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=27.9
Q ss_pred cccccccCcHHHHHHHHHHHHHhccchhhhhHHHH
Q 005543 644 RYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVI 678 (691)
Q Consensus 644 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (691)
.-..|+ ++++++.++..|..+|.+|++...++|
T Consensus 19 ~~~lRi--~~~Lh~~l~~~A~~~gvSlN~~I~~aL 51 (51)
T PF05534_consen 19 KFNLRI--PPELHRALAEAAAAEGVSLNQWIEEAL 51 (51)
T ss_pred ceeeeC--CHHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 344566 999999999999999999998877664
No 64
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=52.44 E-value=10 Score=35.25 Aligned_cols=59 Identities=24% Similarity=0.452 Sum_probs=43.7
Q ss_pred eEEEEEcCCCCCCCcccccEEEEeecCceEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHHHHH
Q 005543 539 VVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYW 605 (691)
Q Consensus 539 ~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll~~y 605 (691)
--+.++|||-.|+.--++.-|+..+ |++.+--- | +.+.+-..+.+|++.+++..+.+.-
T Consensus 69 rIlalDGCp~~Catk~l~~AGv~~D----~~l~itdl-G---ikK~~~~D~~~edv~kv~~~i~e~l 127 (135)
T COG4273 69 RILALDGCPLRCATKCLAEAGVQAD----VHLTITDL-G---IKKTYPSDCKDEDVEKVARTIKEAL 127 (135)
T ss_pred ceEEecCChHHHHHHHHHHhcccee----EEEEehhc-c---cccCCCCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999886 66666432 1 2233445788999988888776543
No 65
>PRK11675 LexA regulated protein; Provisional
Probab=47.61 E-value=24 Score=31.08 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Q 005543 651 ADKETYEAVDELAKLQNKNAHQLAIEVIRNFVA 683 (691)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (691)
|+.+++..|.+||+.+|.+-+++-.++|..|+.
T Consensus 57 ldedl~ekL~eyAe~~nitRSElIr~~I~k~L~ 89 (90)
T PRK11675 57 LNADLVDALNELAEARNISRSELIEEILMKQLA 89 (90)
T ss_pred ECHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 499999999999999999999888888888874
No 66
>PHA01748 hypothetical protein
Probab=47.38 E-value=35 Score=27.66 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Q 005543 651 ADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (691)
++.++.+.|+.|++..|.+-+++..+||+.++.+.
T Consensus 9 Lp~el~~eld~~a~~~g~~RSE~Ir~Ai~~~~~~~ 43 (60)
T PHA01748 9 IEEDLLELLDRYAIKHGLNRSEAIRKAIEKMVKDE 43 (60)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 39999999999999999998888888988888654
No 67
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=43.05 E-value=41 Score=26.22 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=29.5
Q ss_pred ccccCcHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Q 005543 647 LKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVAS 684 (691)
Q Consensus 647 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (691)
.|+ ..++.+.|+..|+..|.+|+.-.-..|...+.+
T Consensus 9 lRl--P~~l~~~lk~~A~~~gRS~NsEIv~~L~~~l~~ 44 (50)
T PF03869_consen 9 LRL--PEELKEKLKERAEENGRSMNSEIVQRLEEALKK 44 (50)
T ss_dssp EEC--EHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred eEC--CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhc
Confidence 466 999999999999999999997777777777764
No 68
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=42.76 E-value=28 Score=32.51 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=39.6
Q ss_pred EEEecCCCCCccCccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHHh
Q 005543 285 VAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQREN 364 (691)
Q Consensus 285 i~isg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~~~~rd~ 364 (691)
++++|||.+|+.--.+--||.+- +.+.+- .++..+|+|. -+++|++.+++..|.+.----
T Consensus 71 lalDGCp~~Catk~l~~AGv~~D---------~~l~it-----dlGikK~~~~------D~~~edv~kv~~~i~e~l~~~ 130 (135)
T COG4273 71 LALDGCPLRCATKCLAEAGVQAD---------VHLTIT-----DLGIKKTYPS------DCKDEDVEKVARTIKEALTIK 130 (135)
T ss_pred EEecCChHHHHHHHHHHhcccee---------EEEEeh-----hcccccCCCC------CCCHHHHHHHHHHHHHHhhhc
Confidence 79999999999776555555531 122221 1112234443 589999999999988775544
Q ss_pred CCC
Q 005543 365 GRR 367 (691)
Q Consensus 365 G~R 367 (691)
++|
T Consensus 131 ~~~ 133 (135)
T COG4273 131 LNR 133 (135)
T ss_pred ccc
Confidence 443
No 69
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=40.63 E-value=48 Score=30.28 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=43.1
Q ss_pred EEecCCCccCHHHHHHHHHHHHHhC-CCeEEe-cCCCcEEEcCCCcCCHHHHHHHH
Q 005543 131 RTKNPCGKVSNQLYLTMDDLADQFG-IGTLRL-TTRQTFQLHGVLKKDLKTVMRSI 184 (691)
Q Consensus 131 Rir~pgG~lt~~ql~~la~iA~~yG-~g~l~l-TtRQ~iQl~gI~~~~l~~v~~~L 184 (691)
+++.--|.+++.-....-+||+.|. .|+|+. -+|.+.+|| ++++=-+++-++|
T Consensus 34 ~l~~~KG~iP~~F~~~c~dIa~~~~~~G~ik~~r~~~g~rL~-fS~~ip~~v~Qri 88 (108)
T PF12321_consen 34 RLRVHKGHIPPGFLHNCRDIARRYPFRGTIKVYRQRGGVRLH-FSRSIPKKVQQRI 88 (108)
T ss_pred cEEEEcCCCChHHHHHHHHHHHhCCCcEEEEEEEeCCceEEE-EeCCCCHHHhhhh
Confidence 4455568899999999999999998 788887 559999999 6666666777777
No 70
>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins. The region in question is approximately 130 amino acids long.
Probab=38.73 E-value=1e+02 Score=28.58 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecCceEEEEEcCcCCCccchhhhccCCChhhH
Q 005543 515 RGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQEL 594 (691)
Q Consensus 515 ~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~~eel 594 (691)
+-...|.+.|+..+...++ +..|.|+=..|=.+|.++-. +.|.+ +++|.-.+|. +++++-
T Consensus 19 ~~G~~L~~aL~~~~~~~~~--~~~v~v~~v~CL~~C~r~Ct--VA~~~--~gK~tYlfGd--------------l~p~~~ 78 (116)
T PF07845_consen 19 RPGAALLDALRAALADAPL--PDGVEVRPVECLSACDRPCT--VALQA--PGKWTYLFGD--------------LDPDED 78 (116)
T ss_pred ChHHHHHHHHHHHHhcCCC--CCceEEEeccHHhcCCCceE--EEEEc--CCCcEEEEec--------------CCcccC
Confidence 3344566667666554333 45688886666666666533 66666 4456555544 333222
Q ss_pred HHHHHHHHHHHHHhcc
Q 005543 595 EKVFEPLFYYWKQKRQ 610 (691)
Q Consensus 595 ~~~l~~ll~~y~~~~~ 610 (691)
.+-|....+.|.+..+
T Consensus 79 a~~il~~a~~Y~~s~d 94 (116)
T PF07845_consen 79 AEDILAFAALYAASPD 94 (116)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3333445666776654
No 71
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=37.10 E-value=2.1e+02 Score=27.62 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCeEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHH
Q 005543 433 GRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITE 512 (691)
Q Consensus 433 Grita~ql~~LA~iAe~yg~~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~d 512 (691)
|.|+.+.+..+|+.. +++..++..+..--...-..+ .+ ...+..|.|. .|...
T Consensus 36 g~ip~~~~~~iA~~l------------------~v~~~~v~~v~tFY~~f~~~p---~g--k~~I~VC~g~-~C~~~--- 88 (154)
T PRK07539 36 GWVPDEAIEAVADYL------------------GMPAIDVEEVATFYSMIFRQP---VG--RHVIQVCTST-PCWLR--- 88 (154)
T ss_pred CCCCHHHHHHHHHHh------------------CcCHHHHHHHHHHHhhhCcCC---CC--CEEEEEcCCc-hHHHC---
Confidence 566666666665532 466666666655443332221 12 2357799986 46432
Q ss_pred HHhhHHHHHHHHHHHHH-hcCCC-CCCceEEEEEcCCCCCCCcc
Q 005543 513 AERGIPDILKRIRAVFE-KVGLK-YNESVVIRVTGCPNGCARPY 554 (691)
Q Consensus 513 t~~~a~~L~~~l~~~l~-~~gl~-~p~k~kI~vSGCpn~Ca~~~ 554 (691)
-+.++.+.+++.+. +.|.. .+.+|.+.-++|-..|...-
T Consensus 89 ---Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~gP 129 (154)
T PRK07539 89 ---GGEAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNAP 129 (154)
T ss_pred ---CHHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCCC
Confidence 23445666665554 33332 24568999999999997654
No 72
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=34.49 E-value=69 Score=27.02 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=33.6
Q ss_pred ccccCcHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhh
Q 005543 647 LKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQ 686 (691)
Q Consensus 647 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (691)
-|| ..+|.+.|+.++..-|++-.-...|||++|+.+..
T Consensus 10 iRl--p~E~~eRL~~Ls~~tgrtkayyvrEaIE~~ieemE 47 (80)
T COG4710 10 IRL--PLELKERLDNLSKNTGRTKAYYVREAIEAYIEEME 47 (80)
T ss_pred eeC--CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 377 99999999999999999888888999999987754
No 73
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=31.18 E-value=76 Score=25.89 Aligned_cols=39 Identities=8% Similarity=0.110 Sum_probs=33.7
Q ss_pred ccccccCcHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Q 005543 645 YNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 645 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (691)
...|+ ++|++.-++=+....|.++.+++..+|+.+++..
T Consensus 28 KtvrV--raDlHhiiKIetAknGgNvKEvme~~lr~~l~~~ 66 (71)
T PF07764_consen 28 KTVRV--RADLHHIIKIETAKNGGNVKEVMEQALREKLKSV 66 (71)
T ss_dssp EEEEE--EHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHH
T ss_pred ceEEe--ehhhhhheeeeecccCCCHHHHHHHHHHHHHHHh
Confidence 33466 9999999999999999999999999999998753
No 74
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=26.51 E-value=4e+02 Score=25.87 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCeEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHH
Q 005543 433 GRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITE 512 (691)
Q Consensus 433 Grita~ql~~LA~iAe~yg~~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~d 512 (691)
|.|+.+.+..||+. .+|+..++..+..--...-..+ .+ ...+..|.|. .|... .
T Consensus 37 G~Ip~e~~~~iA~~------------------l~v~~~~V~~vatFY~~f~~~p---~G--k~~I~VC~~~-~C~~~--G 90 (156)
T PRK05988 37 GYVPEDAVPVIAEA------------------LNLSRAEVHGVITFYHDFRTHP---PG--RHVLKLCRAE-ACQAM--G 90 (156)
T ss_pred CCCCHHHHHHHHHH------------------hCCCHHHHHHHHHHhhccCCCC---CC--CEEEEEeCCc-hhhcC--C
Confidence 66777777766664 2566766666554433222111 12 2347799986 57532 2
Q ss_pred HHhhHHHHHHHHHHHHH-hcC-CCCCCceEEEEEcCCCCCCCcccccEEEEeecCceEEEEEcCcCCCccchhhhccCCC
Q 005543 513 AERGIPDILKRIRAVFE-KVG-LKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVK 590 (691)
Q Consensus 513 t~~~a~~L~~~l~~~l~-~~g-l~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~ 590 (691)
+.+|.+.+++.+. +.| ...+.+|++.-+.|-..|..+-. +.+.+. +...++
T Consensus 91 ----~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~aP~--------------~~in~~---------~~~~lt 143 (156)
T PRK05988 91 ----GDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACSPA--------------AMLDGE---------VHGRLD 143 (156)
T ss_pred ----HHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCe--------------EEECCE---------EeCCCC
Confidence 3345566655442 111 12356799999999999976532 233332 223577
Q ss_pred hhhHHHHHHHH
Q 005543 591 VQELEKVFEPL 601 (691)
Q Consensus 591 ~eel~~~l~~l 601 (691)
++.+.++++.+
T Consensus 144 ~~~~~~il~~~ 154 (156)
T PRK05988 144 PQRLDALLAEA 154 (156)
T ss_pred HHHHHHHHHHh
Confidence 88877776654
No 75
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=26.11 E-value=4.1e+02 Score=25.33 Aligned_cols=92 Identities=15% Similarity=0.264 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCeEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchHHH
Q 005543 433 GRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITE 512 (691)
Q Consensus 433 Grita~ql~~LA~iAe~yg~~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C~~ai~d 512 (691)
|.|+.+.+..+|+. .+++..++..+..--...-..+ .+ ...+..|.|. .|... -
T Consensus 30 G~i~~~~~~~iA~~------------------l~~~~~~v~~v~tFY~~f~~~p---~g--k~~I~VC~g~-~C~~~--G 83 (148)
T TIGR01958 30 GWVTPEAIAAVAEM------------------LGIPPVWVYEVATFYSMFDTEP---VG--RYHLQVCTNV-PCALR--G 83 (148)
T ss_pred CCCCHHHHHHHHHH------------------hCcCHHHHHHHHhHHhhcCcCC---CC--CEEEEEcCCc-hhhhc--C
Confidence 56677766666553 2566666666654443322221 12 2358899986 46432 2
Q ss_pred HHhhHHHHHHHHHHHHHh-cC-CCCCCceEEEEEcCCCCCCCcc
Q 005543 513 AERGIPDILKRIRAVFEK-VG-LKYNESVVIRVTGCPNGCARPY 554 (691)
Q Consensus 513 t~~~a~~L~~~l~~~l~~-~g-l~~p~k~kI~vSGCpn~Ca~~~ 554 (691)
+.++.+++++.+.- .| ...+.+|.+.-++|-..|...-
T Consensus 84 ----a~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~aP 123 (148)
T TIGR01958 84 ----SEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNAP 123 (148)
T ss_pred ----HHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCCC
Confidence 33445555554421 11 1224569999999999997653
No 76
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.84 E-value=3e+02 Score=32.23 Aligned_cols=129 Identities=18% Similarity=0.317 Sum_probs=71.0
Q ss_pred cCCCCHHHHHHHHHHHH-HHHHHhCCCC-cchhhhHHHHHHhhChhHHHHHHHHHhCCCCCCCC---CCC-------ccc
Q 005543 342 LGYVPKEDILYAVKAIV-VTQRENGRRD-DRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFR---QLP-------EWE 409 (691)
Q Consensus 342 l~~v~~e~v~~~~~ai~-~~~rd~G~R~-~R~~aRlk~li~~~G~e~f~e~le~~~g~~l~~~~---~~~-------~~~ 409 (691)
+.|++.+||.++++.++ .+|++..+-+ ..+-.|| +|.+.+++| |...+..+ .+. ..+
T Consensus 239 mSF~~~edv~~~~E~l~~~vf~~~~~i~l~~pFprm----------tY~eAm~~Y-GSDKPDlRf~lel~dvt~~~~~~~ 307 (585)
T COG0173 239 MSFVDEEDVMELIEKLLRYVFKEVKGIELKTPFPRM----------TYAEAMRRY-GSDKPDLRFPLELIDVTDLFKDSE 307 (585)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHhcCCccCCCcccc----------cHHHHHHHh-CCCCCcccCCceehhHHHHhcCCC
Confidence 35899999999999998 5788764311 1122333 345666654 43221111 000 001
Q ss_pred cccccceEeecCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhCC----eEEEcCCC--cEEEccCCccCHHHHHHHHHHC
Q 005543 410 FKSHLGWHEQGDGGLFCGLHVDNG-RIAGKMKKTLREIIEKYNL----NVRITPNQ--NIILCDIRKAWKRPITTALAQA 482 (691)
Q Consensus 410 ~~d~~G~~~q~dG~~~v~i~vp~G-rita~ql~~LA~iAe~yg~----~irlT~~Q--nl~L~gI~~e~~~~i~~~L~~~ 482 (691)
+.-+-+. -.+|.-.-.+.+|+| .++-.++..+.++|+.||. .|+++..+ +-+...++++...+| +...
T Consensus 308 F~vF~~~--~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl~e~~~~~l---~~~~ 382 (585)
T COG0173 308 FKVFSNA--LANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDGLKGPIAKFLSEEILEEL---IERL 382 (585)
T ss_pred cceehhh--hhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecCCccchHHHhcCHHHHHHH---HHHh
Confidence 1111111 223333447889985 4577899999999999985 48887775 223333444434333 3344
Q ss_pred CCCC
Q 005543 483 GLLL 486 (691)
Q Consensus 483 Gl~~ 486 (691)
|+..
T Consensus 383 ~~~~ 386 (585)
T COG0173 383 GAED 386 (585)
T ss_pred CCCC
Confidence 5543
No 77
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=25.66 E-value=1e+02 Score=25.45 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---eEEEcCCCcEEEccCCccCHHHHHHHHHH
Q 005543 431 DNGRIAGKMKKTLREIIEKYNL---NVRITPNQNIILCDIRKAWKRPITTALAQ 481 (691)
Q Consensus 431 p~Grita~ql~~LA~iAe~yg~---~irlT~~Qnl~L~gI~~e~~~~i~~~L~~ 481 (691)
|.|-+.+=+-.-..+|-+.|-. .||.++..+|.+.|...++...|.+.|++
T Consensus 2 p~ga~~AL~~EL~kRl~~~yPd~~v~Vr~~s~~~l~v~g~~~~~k~~i~~iLqe 55 (65)
T PF06183_consen 2 PAGALEALESELTKRLHRQYPDAEVRVRPGSANGLSVSGGKKDDKERIEEILQE 55 (65)
T ss_dssp -TTHHHHHHHHHHHHHHHH-SS-EEEEEEESS-EEEEES--HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCCCceEeeeecccCccccCCcCchHHHHHHHHHHH
Confidence 5566655455555778888976 48888999999999998878888888875
No 78
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=25.39 E-value=31 Score=31.44 Aligned_cols=56 Identities=29% Similarity=0.460 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCCCCcccccEEEEeecCceEEEEEcCcCCCccchhhhccCCChhhHHHHHHHHH
Q 005543 539 VVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLF 602 (691)
Q Consensus 539 ~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~~~~rla~~l~~~v~~eel~~~l~~ll 602 (691)
--|.|+|||-.|++-....-|+... ..|.+- ..|-. +.....++.+++...++.+-
T Consensus 53 ~iIaIDGC~~~Ca~k~le~~g~~~~----~~i~~t-dlgi~---k~~~~~~~~~~i~~~~~~v~ 108 (110)
T PF08859_consen 53 PIIAIDGCPLCCAKKILEEAGVKPD----EHIVLT-DLGIK---KRKGDDVSEEEIEEVVEAVK 108 (110)
T ss_pred ceEEECCCHHHHHHHHHHHcCCCCc----eEEEEe-ecccc---cCCCCCCCHHHHHHHHHHHH
Confidence 5699999999999999888887764 334443 33311 11113678888888876653
No 79
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=25.22 E-value=3.5e+02 Score=23.93 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=46.7
Q ss_pred EEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCcccccEEEEeecCceEEEEEcCcC
Q 005543 497 AMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTH 576 (691)
Q Consensus 497 v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lGG~~ 576 (691)
+..|.| +|..+. -+.++.+.|++.+++.++ .+.+.-+||---|.+--+-+| +.-+
T Consensus 3 I~Vc~g--T~ciAa-----GA~~V~~al~~ei~~~gl----~v~v~~tGC~G~C~~ePlV~V------------~~p~-- 57 (92)
T cd03063 3 IYVPRD--AAALAL-----GADEVAEAIEAEAAARGL----AATIVRNGSRGMYWLEPLVEV------------ETPG-- 57 (92)
T ss_pred EEEeCC--hhhhhh-----CHHHHHHHHHHHHHHcCC----eEEEEEecCceecCCCCEEEE------------EeCC--
Confidence 456665 455443 234456667766766676 377788899766655544333 2111
Q ss_pred CCccchhhhccCCChhhHHHHHHHHHH
Q 005543 577 NQTTLARTFMNKVKVQELEKVFEPLFY 603 (691)
Q Consensus 577 ~~~rla~~l~~~v~~eel~~~l~~ll~ 603 (691)
++.+...|+++++.++++..+.
T Consensus 58 -----g~v~Y~~V~~edv~~Iv~~~~~ 79 (92)
T cd03063 58 -----GRVAYGPVTPADVASLLDAGAL 79 (92)
T ss_pred -----CcEEEEeCCHHHHHHHHHHHhh
Confidence 0123457999999999988654
No 80
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=24.35 E-value=1.1e+02 Score=26.75 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.8
Q ss_pred cccccceEeecCC--cEEEEEEeCCCCCCHHHHHHHHHHHHHhCCe
Q 005543 410 FKSHLGWHEQGDG--GLFCGLHVDNGRIAGKMKKTLREIIEKYNLN 453 (691)
Q Consensus 410 ~~d~~G~~~q~dG--~~~v~i~vp~Grita~ql~~LA~iAe~yg~~ 453 (691)
.+|.+.|.++++. ..+|-++-|+|+++.+|...+..+.+. |..
T Consensus 48 ~PDl~~~~~~~~~~~~~~iEvK~p~~~ls~~Q~~~~~~l~~~-G~~ 92 (100)
T PF08774_consen 48 FPDLILWRPRGKRDIFLFIEVKGPGDRLSPNQKEWIDKLREA-GFR 92 (100)
T ss_pred CCcEEEEecCCCccEEEEEEEcCCCCCcCHHHHHHHHHHHHC-CCE
Confidence 4566666655432 568999999999999999999777654 543
No 81
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=22.31 E-value=4.3e+02 Score=22.02 Aligned_cols=75 Identities=11% Similarity=0.278 Sum_probs=42.7
Q ss_pred eEEecCCCCCCcchHHHHHhhHHHHHHHHHHHHHhcCC--CCCCceEEEEEcCCCCCCCcccccEEEEeecCceEEEEEc
Q 005543 496 TAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGL--KYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLG 573 (691)
Q Consensus 496 ~v~aC~G~~~C~~ai~dt~~~a~~L~~~l~~~l~~~gl--~~p~k~kI~vSGCpn~Ca~~~~aDIG~vG~g~~gy~I~lG 573 (691)
.+..|.++ .|... -+.++.+.+++.+...+. ..+..+.+.=+||-..|.+.-.-.| .
T Consensus 3 ~v~vC~~~-~C~~~------Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~ClG~C~~gP~v~v--------------~ 61 (80)
T cd03064 3 VIRVCTGT-ACHLR------GAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMI--------------N 61 (80)
T ss_pred EEEECCCc-HHHhC------CHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCcCcCCCCCEEEE--------------C
Confidence 46788886 45432 233455555554432211 2234588888999999975433332 1
Q ss_pred CcCCCccchhhhccCCChhhHHHHHHH
Q 005543 574 GTHNQTTLARTFMNKVKVQELEKVFEP 600 (691)
Q Consensus 574 G~~~~~rla~~l~~~v~~eel~~~l~~ 600 (691)
| .+...++++++.++++.
T Consensus 62 g---------~~y~~vt~~~i~~i~~~ 79 (80)
T cd03064 62 D---------DVYGRLTPEKVDAILEA 79 (80)
T ss_pred C---------EEECCCCHHHHHHHHHh
Confidence 1 12235778888887764
No 82
>PF05509 TraY: TraY domain; InterPro: IPR008876 This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid [].; GO: 0003677 DNA binding, 0000746 conjugation
Probab=22.13 E-value=1.8e+02 Score=22.70 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=34.3
Q ss_pred cccCcHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhhc
Q 005543 648 KLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQN 687 (691)
Q Consensus 648 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (691)
+| +.++.+.|.+.|+.-|.+-+.=|...|..+|..|..
T Consensus 4 ~L--~~e~~~~L~~~a~rsGRSK~~Ea~~rL~dHL~~f~d 41 (49)
T PF05509_consen 4 RL--DEETNQRLEAAAERSGRSKRFEARLRLEDHLDRFPD 41 (49)
T ss_pred ec--CHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHh
Confidence 56 999999999999999999999999999999987753
No 83
>PF07704 PSK_trans_fac: Rv0623-like transcription factor; InterPro: IPR011660 This entry represents the Rv0623 (P96913 from SWISSPROT)-like group of transcription factors associated with the PSK operon [].
Probab=22.09 E-value=1.8e+02 Score=25.13 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=32.8
Q ss_pred ccC-cHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhhc
Q 005543 649 LFA-DKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQN 687 (691)
Q Consensus 649 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (691)
|+| ++++.+.+.++|..-|.++|+....|++..++..++
T Consensus 3 L~Ikd~ev~~LareLA~~tG~s~TeAVr~AL~~~L~~~~~ 42 (82)
T PF07704_consen 3 LNIKDPEVDRLARELARLTGESKTEAVRRALRERLERRRR 42 (82)
T ss_pred CCcCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhccc
Confidence 345 888999999999999999999999999999874433
No 84
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=21.30 E-value=1.1e+02 Score=34.15 Aligned_cols=41 Identities=15% Similarity=0.345 Sum_probs=32.3
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHHHhCCe-EEEcCCCcEEEcc
Q 005543 426 CGLHVDNGRI-AGKMKKTLREIIEKYNLN-VRITPNQNIILCD 466 (691)
Q Consensus 426 v~i~vp~Gri-ta~ql~~LA~iAe~yg~~-irlT~~Qnl~L~g 466 (691)
|-++=|.||+ |.+.|+.|++||++||.. |-=--.|.|.+.|
T Consensus 165 CnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 165 CNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred eCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccC
Confidence 5688899998 889999999999999973 4434566666655
No 85
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=21.04 E-value=1.1e+02 Score=30.67 Aligned_cols=46 Identities=11% Similarity=-0.020 Sum_probs=33.9
Q ss_pred CCCcEEEccCCccCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCC
Q 005543 458 PNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLC 506 (691)
Q Consensus 458 ~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~~~~~~~~~R~v~aC~G~~~C 506 (691)
..||+||.+.+.|-+.++ +.|++.|+.+....+. --++.|.|-...
T Consensus 34 ~iQ~vQ~~g~~~Et~~D~-er~q~yGf~S~ppaGs--e~vvv~lGG~rS 79 (203)
T COG4384 34 GIQNVQLSGLAGETLQDL-ERLQEYGFASVPPAGS--EAVVVPLGGKRS 79 (203)
T ss_pred cEEEEEEecCCcchhhhh-HHHHhcCcccCCCCCC--eEEEEecCCccc
Confidence 689999999999888775 4788999977544432 236788876543
No 86
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=20.69 E-value=3.9e+02 Score=27.32 Aligned_cols=58 Identities=16% Similarity=0.052 Sum_probs=40.9
Q ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHHHHhCCeEEEcCCCcEEEccCCccCHHHHHHHHHHCCCCC
Q 005543 422 GGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLL 486 (691)
Q Consensus 422 G~~~v~i~vp~Grita~ql~~LA~iAe~yg~~irlT~~Qnl~L~gI~~e~~~~i~~~L~~~Gl~~ 486 (691)
|..++....-.|-=.-+.++++|+.|.++|..+.-|. ||+.++.++|.+...++|...
T Consensus 148 G~~SiKffPm~Gl~~leE~~avAkA~a~~g~~lEPTG-------GIdl~N~~~I~~i~l~aGv~~ 205 (218)
T PF07071_consen 148 GGSSIKFFPMGGLKHLEELKAVAKACARNGFTLEPTG-------GIDLDNFEEIVKICLDAGVEK 205 (218)
T ss_dssp T--EEEE---TTTTTHHHHHHHHHHHHHCT-EEEEBS-------S--TTTHHHHHHHHHHTT-S-
T ss_pred CCCeeeEeecCCcccHHHHHHHHHHHHHcCceeCCcC-------CcCHHHHHHHHHHHHHcCCCe
Confidence 3346666666777788999999999999998777774 688899999999999999753
No 87
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=20.65 E-value=1.3e+02 Score=26.45 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=24.9
Q ss_pred eEEEEEecCCCccCHHHHHHHHHHHHH
Q 005543 127 SFMLRTKNPCGKVSNQLYLTMDDLADQ 153 (691)
Q Consensus 127 ~fmlRir~pgG~lt~~ql~~la~iA~~ 153 (691)
.+++-++-|+|+++.+|...+..+.+.
T Consensus 63 ~~~iEvK~p~~~ls~~Q~~~~~~l~~~ 89 (100)
T PF08774_consen 63 FLFIEVKGPGDRLSPNQKEWIDKLREA 89 (100)
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHHC
Confidence 689999999999999999999888766
Done!