Query 005543
Match_columns 691
No_of_seqs 384 out of 2460
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 18:08:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005543.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2051-2054//hhsearch_pdb/005543hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g38_A SIR-HP, sirhp, sulfite 1.0 1 1 975.6 36.5 534 67-626 11-558 (570)
2 1zj8_A Probable ferredoxin-dep 1.0 1 1 849.5 41.9 507 67-629 30-566 (566)
3 1aop_A Sirhp, sulfite reductas 1.0 1 1 845.7 37.2 482 123-630 2-489 (497)
4 3b0g_A NII3, nitrite reductase 1.0 1 1 807.6 28.8 483 68-609 70-583 (591)
5 2akj_A Ferredoxin--nitrite red 1.0 1 1 806.8 32.3 483 68-609 87-601 (608)
6 3or1_B Sulfite reductase beta; 1.0 1 1 325.7 16.8 215 126-392 61-354 (386)
7 3mm5_A Sulfite reductase, diss 1.0 1 1 321.6 15.9 218 123-392 91-379 (418)
8 3mm5_B Sulfite reductase, diss 1.0 1 1 315.2 16.3 230 108-393 36-338 (366)
9 3or1_A Sulfite reductase alpha 1.0 1 1 312.3 17.3 219 123-392 93-396 (437)
10 2akj_A Ferredoxin--nitrite red 1.0 1 1 307.6 17.2 255 412-668 137-439 (608)
No 1
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=1.00 E-value=1 Score=975.57 Aligned_cols=534 Identities=37% Similarity=0.653 Sum_probs=497.4
Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHC-CCCCCHHHHHHHHHCEEEEECCCCCCCC-------CCCEEEEEEECCCCC
Q ss_conf 47899934544210499751068865300-9999966778665123474125774687-------640089998529974
Q 005543 67 TETKRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERGA-------KSYSFMLRTKNPCGK 138 (691)
Q Consensus 67 ~~~k~~~~E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~lk~~G~y~q~~r~~r~~-------~~~~fmlRir~pgG~ 138 (691)
...|+|++|+||++||||++++.+++.+. ..++++++++++||||+|+|+|||.|.+ +.|+||+|+|+|||.
T Consensus 11 ~~~~l~~~E~~K~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~k~~G~y~Q~~r~~~~~~~~~~~~~~~~fm~Rvr~pgG~ 90 (570)
T 4g38_A 11 VEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGV 90 (570)
T ss_dssp ----------------------------------------------------------------------CCCEECGGGE
T ss_pred CCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEEECCCCCCHHHHCCCCCCCCCEEEEEECCCCC
T ss_conf 07998868877500652356899998775208999899887765101375364420012102357576379998357862
Q ss_pred CCHHHHHHHHHHHHHH-CCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCEECCCCCCCHHHHHH
Q ss_conf 5899999999999992-99919805899679807895899999999999719-987777898752004999886245578
Q 005543 139 VSNQLYLTMDDLADQF-GIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLF 216 (691)
Q Consensus 139 lt~~ql~~la~ia~~y-G~g~i~lTtRQ~iqlhgI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RNV~acp~~~~~~~~~d 216 (691)
+|++||++|++||++| |+|++++|||||||||||.++|+++++++| .++| +++++|||++||||+||+|++...+.+
T Consensus 91 lt~~Ql~~la~iA~~y~g~G~i~lTtRqniQl~gi~~~~~~~i~~~L-~~~gl~~~~a~Gd~vRNV~~~p~p~~g~~~~d 169 (570)
T 4g38_A 91 ITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQML-HSVGLDALATAWDMNRNVLCTSNPYESQLHAE 169 (570)
T ss_dssp EEHHHHHHHHHHHHHHBSSCCEEECTTSCEECCSBC-----CHHHHH-HTTTCEECCTTTCCBCCCEECSSCSSGGGHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCEEECCCCCCCCCHHH
T ss_conf 29999999999999808997699947851799447888899999999-97699876566788665683687445743788
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 99999999986189766531100353222358990234202689999999999998767888997229999669999844
Q 005543 217 AQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVD 296 (691)
Q Consensus 217 ~~~la~~i~~~l~p~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~nc~~ 296 (691)
+.++|.+|+++|.|.+.+|+++|++++++.+.+ .||+|+.++|||||||+||||++||++
T Consensus 170 ~~~~a~~i~~~l~~~~~~~~e~~l~~~~~~~~~--------------------~~p~~g~~~LPrKFKiavsg~~~~~~~ 229 (570)
T 4g38_A 170 AYEWAKKISEHLLPRTRAYAEIWLDQEKVATTD--------------------EEPILGQTYLPRKFKTTVVIPPQNDID 229 (570)
T ss_dssp HHHHHHHHHHHTCC---------------------------------------------------CBCEEEECTTBCTTC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHCCCC--------------------CCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 999999999864135336788872220002554--------------------573224557998669999778866656
Q ss_pred CCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 74487899999548996213999982787876776665674443358999778999999999999993899840123699
Q 005543 297 ILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMK 376 (691)
Q Consensus 297 ~~~~Diglv~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~eev~~~~~ai~~~~rd~G~R~~R~~aRlk 376 (691)
+++|||||+++.++ |+..||+|||||++|++|++++|+|++|+.++||++|++++++++|+.+|+++|+|.+|+++||+
T Consensus 230 ~~~~Dig~~a~~~~-~~~~Gf~v~vGGg~g~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~G~r~~r~kaRlk 308 (570)
T 4g38_A 230 LHANDMNFVAIAEN-GKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTK 308 (570)
T ss_dssp GGGSSEEEEEEESS-SSEEEEEEEECCBCCCCTTCTTCCCBCCEEEEEEEGGGHHHHHHHHHHHHHHHCC-----CCSHH
T ss_pred CCCCCEEEEEEEEC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 73675899999937-95346899973555555676667775245337668999999999999999985664433466799
Q ss_pred HHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCH----HHHHHHHHHHHHHCC
Q ss_conf 9999418257999999994998888888985434566664860699189999818988779----999999999999199
Q 005543 377 YLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNL 452 (691)
Q Consensus 377 ~li~~~G~e~f~e~ve~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~i~vp~Grit~----~ql~~La~iAe~yg~ 452 (691)
|+|++||+++|++++++++|.++.+..+.......||+||++|+||.|+|++++|+|++++ ++++.||+||++|+.
T Consensus 309 ~li~~~G~e~f~~~v~~~~g~~~~~~~~~~~~~~~d~~g~~~~~dG~~~v~v~~~~Grl~~~~~~~~l~~La~iAe~~gg 388 (570)
T 4g38_A 309 YTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKG 388 (570)
T ss_dssp HHHHHHCHHHHHHHHHHHHTCCCBCCCCCCCCBCCCCCEEEECSTTEEEEEECCGGGEECEETTEEHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 99874138999999999864246888766767776665720368972899998337765588648999999999998499
Q ss_pred EEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 29976798479825894698999999998899989988988652885589999910477898339999999999898607
Q 005543 453 NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVG 532 (691)
Q Consensus 453 ~IrlT~~QnI~L~gI~~e~~~~i~~~L~~~GL~~~~~~~~~~r~v~aC~G~~~C~~ai~Dt~~~a~~l~~~l~~~~~~~g 532 (691)
.||+|++|||+|.||++++++++++.|.++||. .+.++.+++++||||+++|++|++||+++++.|.++++..+...+
T Consensus 389 ~iRlT~~Qniil~gv~~e~l~~i~~~L~~~Gl~--~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~~~~~~ 466 (570)
T 4g38_A 389 DFRITANQNLIIAGVPESEKAKIEKIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHG 466 (570)
T ss_dssp EEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTT--CCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCEEEECCCHHHHHHHHHHHHHCCCC--CCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 699999985899139989999999999976998--788876137387988776545467699999999999998875347
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 77887428999769999987644517999341752999974767995211152058996669999999999999960148
Q 005543 533 LKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTK 612 (691)
Q Consensus 533 l~~p~kikI~iSGCpn~Ca~~~~aDIGlvG~g~~gy~I~iGG~~~~~rlg~~l~~~v~~eei~~~i~~ll~~y~~~~~~~ 612 (691)
+. |.+++|+||||||+|++++++||||+|++.++|+||+||+.+++++|+++...++.+++++++++++++|.+++++
T Consensus 467 l~-p~~iki~vSGCpn~C~~~~~aDIGlvG~~~g~y~l~lGG~~~~~r~g~~~~~~v~~~ei~~~l~~ll~~y~~~r~~- 544 (570)
T 4g38_A 467 VS-DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREA- 544 (570)
T ss_dssp CT-TCCCCEEEESSTTCTTCGGGSSEEEEEEETTEEEEEECCCTTSCSCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCT-
T ss_pred CC-CCCEEEEEECCCCHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 77-7761899957875121035364579975156169997996777520014323779899999999999999982777-
Q ss_pred CCCHHHHHHHHCHH
Q ss_conf 98376899842979
Q 005543 613 DESFGDFTNRMGFE 626 (691)
Q Consensus 613 ~Erf~~~i~R~G~e 626 (691)
+|||++|++|+|+.
T Consensus 545 ~E~f~~~~~R~G~~ 558 (570)
T 4g38_A 545 GEGFGDFTVRAGII 558 (570)
T ss_dssp TCCHHHHHHHTTSS
T ss_pred CCCHHHHHHHCCCC
T ss_conf 99599999865974
No 2
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=1.00 E-value=1 Score=849.53 Aligned_cols=507 Identities=24% Similarity=0.436 Sum_probs=450.6
Q ss_pred CCCCCCHHHHHHHHCCCC--CCCHHHHHHHC-CCCCCHHHHH-HHHHCEEEEECCCCCCCC----------CCCEEEEEE
Q ss_conf 478999345442104997--51068865300-9999966778-665123474125774687----------640089998
Q 005543 67 TETKRSKVEIIKEQSNFI--RYPLNEELLTD-APNVNESATQ-LIKFHGSYQQYNRDERGA----------KSYSFMLRT 132 (691)
Q Consensus 67 ~~~k~~~~E~~K~~~~~l--~~~~~~~~~~~-~~~~~~~~~~-~lk~~G~y~q~~r~~r~~----------~~~~fmlRi 132 (691)
...|+|++|++|.+|+|| ++.+.+.+++. .+++++++++ ++||||+|+|++++.|++ .+++||+|+
T Consensus 30 ~~~~~~~~E~~K~~~~~l~~~~~i~~~~~~~~~~~i~~~d~~~~~k~~G~y~q~~~~~~~~~~~~~~~~~~~~~~~mvRv 109 (566)
T 1zj8_A 30 HREPLNANEELKKAGNPLDVRERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRV 109 (566)
T ss_dssp CCSCCSHHHHHGGGSCGGGHHHHHHHTHHHHCGGGSCHHHHHTGGGGGTEEEEECTTCCGGGCSGGGHHHHEEEEEEEEE
T ss_pred CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 78999868887511556778999999986368778997897533537885052577654322333343334674389996
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCEECCCCC-CC
Q ss_conf 529974589999999999999299919805899679807895899999999999719-9877778987520049998-86
Q 005543 133 KNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LV 210 (691)
Q Consensus 133 r~pgG~lt~~ql~~la~ia~~yG~g~i~lTtRQ~iqlhgI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RNV~acp~~-~~ 210 (691)
|+|+|.+|++||+.|++||++||+|++++|||||||||||.++++++++++| .+.| .++++|||++|||++||++ .|
T Consensus 110 r~p~G~lt~~qlr~la~ia~~yg~g~i~~TtRqniql~gi~~~~l~~i~~~L-~~~gl~~~~~~G~~~Rnv~~~p~~~~~ 188 (566)
T 1zj8_A 110 RCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRL-DDVGLQTTEACGDCPRVVLGSPLAGES 188 (566)
T ss_dssp BCGGGEECHHHHHHHHHHHHHHSTTEEEECTTSCEEEEEECGGGHHHHHHHH-HTTTCBCTTSSSSSEEEEEECTTTTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 4788708999999999999997899299977751799268889999999999-975998777757787870017465548
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 24557899999999986189766531100353222358990234202689999999999998767888997229999669
Q 005543 211 RKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVP 290 (691)
Q Consensus 211 ~~~~~d~~~la~~i~~~l~p~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~ 290 (691)
..++.|+.+++.+|.+.|.. +++ | .+|||||||+||||
T Consensus 189 ~~~~~D~~~~~~~l~~~~~~--------------------------------------~~~--~--~~LP~KfKiavsgc 226 (566)
T 1zj8_A 189 LDEVLDPTWAIEEIVRRYIG--------------------------------------KPD--F--ADLPRKYKTAISGL 226 (566)
T ss_dssp TTCSCCTHHHHHHHHHHHTT--------------------------------------SGG--G--SSCSSCEEEEEESS
T ss_pred CCCCCCCHHHHHHHHHHHCC--------------------------------------CCC--C--CCCCCCEEEEEECC
T ss_conf 30015829999999998737--------------------------------------942--1--36885048998446
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99984474487899999548996213999982787876776665674443358-99977899999999999999389984
Q 005543 291 TDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDD 369 (691)
Q Consensus 291 ~~nc~~~~~~Diglv~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~~~rd~G~R~~ 369 (691)
++.| +.++||||++++++++ ..||+|+|||++|. .|++|+.++ ||+++++++++++|+.+|+++|+|+|
T Consensus 227 ~~~~--~~~~Dig~i~~~~~~~-~~G~~v~vGG~~g~-------~p~~a~~l~~~v~~e~v~~~~~ai~~~~~~~G~R~~ 296 (566)
T 1zj8_A 227 QDVA--HEINDVAFIGVNHPEH-GPGLDLWVGGGLST-------NPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRL 296 (566)
T ss_dssp SCSC--GGGSSEEEEEEEETTT-EEEEEEEECCBCSS-------SCBCCEEEEEEECGGGHHHHHHHHHHHHHHHSCCSS
T ss_pred CCCC--CCCCCEEEEEEEECCC-CCEEEEEECCCCCC-------CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7744--3237489998994588-75089998154799-------984131540588999999999999999998484113
Q ss_pred CHHHHHHHHHHHHCHHHHHHHHH-HHHCCCCCCC-CCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 01236999999418257999999-9949988888-889854345666648606991899998189887799999999999
Q 005543 370 RKYSRMKYLISSWGIEKFRSVVE-QYYGKKFEPF-RQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREII 447 (691)
Q Consensus 370 R~~aRlk~li~~~G~e~f~e~ve-~~~g~~l~~~-~~~~~~~~~d~~G~~~q~dG~~~v~i~vp~Grit~~ql~~La~iA 447 (691)
|+++|++|+|++||+++|+++++ ++++.++.+. .+.+.+...+|.||++|+||.|++++++|+|++++++|+.||++|
T Consensus 297 r~~aRl~~li~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~qk~G~~~v~v~~p~G~lt~~~l~~Ladia 376 (566)
T 1zj8_A 297 RAKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLM 376 (566)
T ss_dssp GGGCSHHHHHHHHCHHHHHHHHHHHTTSSCCEECCCCCCCSSCCCCCEEEECTTSSEEEEEBCBTTEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 41377999999978899999999985566556677766765667776632155785899996778706999999999999
Q ss_pred HHHCC-EEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99199-29976798479825894698999999998899989988988652885589999910477898339999999999
Q 005543 448 EKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRA 526 (691)
Q Consensus 448 e~yg~-~IrlT~~QnI~L~gI~~e~~~~i~~~L~~~GL~~~~~~~~~~r~v~aC~G~~~C~~ai~Dt~~~a~~l~~~l~~ 526 (691)
++||. .+|+|++|||+|.+|++++++++++.|.+.|+.... +..+|+++||+|+++|++|++||+.++..|.+.+++
T Consensus 377 e~yg~g~irlT~~qniil~~v~~~~l~~i~~~L~~~Gl~~~~--s~~~r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~ 454 (566)
T 1zj8_A 377 ARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSRP--SHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELER 454 (566)
T ss_dssp HHHTCCCEEECTTSCEEEEEECHHHHHHHHHHHHHTTCBSSC--CHHHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 984999799988886799369989999999999973997789--875365116888253755033189999999999999
Q ss_pred HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECC--------CEEEEEECCCCC-CCCCHHHHC-CCCCHHHHHH
Q ss_conf 898607778874289997699999876445179993417--------529999747679-952111520-5899666999
Q 005543 527 VFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP--------NSYQIWLGGTHN-QTTLARTFM-NKVKVQELEK 596 (691)
Q Consensus 527 ~~~~~gl~~p~kikI~iSGCpn~Ca~~~~aDIGlvG~g~--------~gy~I~iGG~~~-~~rlg~~l~-~~v~~eei~~ 596 (691)
.+...+...|.+|+|+||||||+|++++++||||+|+.. ++|+||+||+.+ .+++|+++. ..++.+++++
T Consensus 455 ~l~~~~~~~~~~~ki~vSGCpN~Ca~~~~aDIGivG~~~~~~~g~~~~gy~i~lGG~~g~~~~~g~~l~~~~v~~eei~~ 534 (566)
T 1zj8_A 455 RLEDINSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGD 534 (566)
T ss_dssp HTHHHHTTCCSCCCEEEESSTTCTTCGGGSSEEEEEEEEESSSSCEEEEEEEEESCBCSTTCBCCEECTTCCEETTTHHH
T ss_pred HHHCCCCCCCCCCEEEEECCCCCCHHHHHCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 86222434677855887148756634442253478786157788612059998378778777421103457899999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHH
Q ss_conf 999999999996014898376899842979999
Q 005543 597 VFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQ 629 (691)
Q Consensus 597 ~i~~ll~~y~~~~~~~~Erf~~~i~R~G~e~l~ 629 (691)
++++++++|.+++++ +|||++|++|+|++.|+
T Consensus 535 ~l~~l~~~y~~~~~~-~Erf~~~i~R~G~~~~~ 566 (566)
T 1zj8_A 535 YIDRVVRNFVKHRSE-GERFAQWVIRAEEDDLR 566 (566)
T ss_dssp HHHHHHHHHHHSCCT-TCCHHHHHHHSCGGGGC
T ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHCCHHHCC
T ss_conf 999999999983778-99799999963877339
No 3
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=1.00 E-value=1 Score=845.74 Aligned_cols=482 Identities=37% Similarity=0.665 Sum_probs=447.5
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC-CCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCC
Q ss_conf 764008999852997458999999999999929-9919805899679807895899999999999719-98777789875
Q 005543 123 AKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNR 200 (691)
Q Consensus 123 ~~~~~fmlRir~pgG~lt~~ql~~la~ia~~yG-~g~i~lTtRQ~iqlhgI~~~~l~~v~~~L~~~~g-~t~~a~GD~~R 200 (691)
++.|+||+|+|+|+|.+|++||+.|++||++|| +|++|+|||||||||||.++++++++++| .+.| +++++|||++|
T Consensus 2 ~~~~~~m~Rvr~p~G~lt~~qlr~la~ia~~yg~~g~~~~TtRq~iql~gi~~~~~~~i~~~L-~~~gl~~~~~~Gd~~R 80 (497)
T 1aop_A 2 EPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQML-HSVGLDALATANDMNR 80 (497)
T ss_dssp ------CEECCCGGGEEEHHHHHHHHHHHHHHBSSCCEEECTTSCEEECCBC-----CHHHHH-HHTTCCCC---CCCBC
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCC
T ss_conf 866217999746885569999999999999858998099977524796688888899999999-9859987646689987
Q ss_pred CEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20049998862455789999999998618976653110035322235899023420268999999999999876788899
Q 005543 201 NVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP 280 (691)
Q Consensus 201 NV~acp~~~~~~~~~d~~~la~~i~~~l~p~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~~LP 280 (691)
||++||++.+..++.|+++++.+|+++|.+.+.+|+|||++++++.+.+ .+|+|+..+||
T Consensus 81 ni~~~p~~~~~~~~~d~~~~a~~l~~~l~~~~~~~~e~wl~~~~~~~~~--------------------~~p~~~~~~LP 140 (497)
T 1aop_A 81 NVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTD--------------------EEPILGQTYLP 140 (497)
T ss_dssp CCEECSSCSSTTHHHHHHHHHHHHHHHTCC----------------------------------------------CCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCC--------------------CCCCCCCCCCC
T ss_conf 7356886457714778999999999986421312455530332224555--------------------78554567899
Q ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 72299996699998447448789999954899621399998278787677666567444335899977899999999999
Q 005543 281 RKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVT 360 (691)
Q Consensus 281 rKfKi~isg~~~nc~~~~~~Diglv~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~eev~~~~~ai~~~ 360 (691)
|||||+||||++||+++.+|||||+++.++ |...||+|||||++|++|++++|+|++|+.++||++|++++++++|+++
T Consensus 141 ~Kfkiavsg~~~~~~~~~~~Dig~i~~~~~-g~~~G~~v~vGG~~g~~~~~~~~~p~~~~~~~~v~~~~~~~~~~ai~~~ 219 (497)
T 1aop_A 141 RKFKTTVVIPPQNDIDLHANDMNFVAIAEN-GKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTT 219 (497)
T ss_dssp SCBCEEEECTTBCTTCGGGSSEEEEEEEET-TEEEEEEEEECCBCCCCTTCTTCCCBCCEEEEEEEGGGHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEEEEC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 857999966875664764677289989978-9534689996266466677556777511403776899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCC---CH
Q ss_conf 999389984012369999994182579999999949988888889854345666648606991899998189887---79
Q 005543 361 QRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AG 437 (691)
Q Consensus 361 ~rd~G~R~~R~~aRlk~li~~~G~e~f~e~ve~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~i~vp~Gri---t~ 437 (691)
|+++|+|.+|+++||+|+|++||+++|++++++++|.++++..+.+.+...+|+||++|+||.|+|++++|+|++ ++
T Consensus 220 ~~~~g~r~~r~~aR~~~li~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~G~~~v~v~~p~G~l~~~~~ 299 (497)
T 1aop_A 220 QRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPA 299 (497)
T ss_dssp HHHHSCSSCSTTCSHHHHHHHHCHHHHHHHHHHHHTCCCBCCCCCCCCBCCCCCEEEECSTTEEEEEECCGGGEECEETT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCH
T ss_conf 99868722125679999999869999999999985887777787775556634047876896399999777880157888
Q ss_pred H-HHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf 9-999999999991992997679847982589469899999999889998998898865288558999991047789833
Q 005543 438 K-MKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERG 516 (691)
Q Consensus 438 ~-ql~~La~iAe~yg~~IrlT~~QnI~L~gI~~e~~~~i~~~L~~~GL~~~~~~~~~~r~v~aC~G~~~C~~ai~Dt~~~ 516 (691)
+ +++.||+||++|+..||+|++|||+|.||++++++++++.|.+.|+.. ..++.+|+++||||+++|+++++||+++
T Consensus 300 ~~~l~~ladia~~ygg~irlT~~qni~l~gv~~~~l~~l~~~L~~~Gl~~--~~~~~~r~i~aC~G~~~C~~a~~dt~~~ 377 (497)
T 1aop_A 300 RPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMN--AVTPQRENSMACVSFPTCPLAMAEAERF 377 (497)
T ss_dssp EEHHHHHHHHHHHCSSEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTTC--CCCHHHHTEEECCCTTTCTTCSSCSTTT
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCC--CCCCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 99999999999986998999489988992389899999999999779977--8887541135156736586313548999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHCCCCCHHHHHH
Q ss_conf 99999999998986077788742899976999998764451799934175299997476799521115205899666999
Q 005543 517 IPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEK 596 (691)
Q Consensus 517 a~~l~~~l~~~~~~~gl~~p~kikI~iSGCpn~Ca~~~~aDIGlvG~g~~gy~I~iGG~~~~~rlg~~l~~~v~~eei~~ 596 (691)
++.|.+++++.+...++ .|.|++|+||||||+|++++++||||+|+..++|+|++||+.+++++|+++...++.+++++
T Consensus 378 a~~l~~~l~~~~~~~~l-~p~~~~i~vSGCpn~C~~~~~aDIGi~G~~~g~y~i~lGG~~~~~~~g~~~~~~v~~~ei~~ 456 (497)
T 1aop_A 378 LPSFIDNIDNLMAKHGV-SDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILA 456 (497)
T ss_dssp HHHHHHHHHHHHHHTTC-TTCCCCEEEESSTTCTTCGGGSSEEEEEEETTEEEEEECCCTTSCSCCEEEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CCCCEEEEEECCCCHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHCCCCHHHHHH
T ss_conf 99999999998740678-87663899978803000110087899985379789998997888640446404799999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHH
Q ss_conf 9999999999960148983768998429799999
Q 005543 597 VFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQE 630 (691)
Q Consensus 597 ~i~~ll~~y~~~~~~~~Erf~~~i~R~G~e~l~~ 630 (691)
++++++++|.+++++ +|||++|++|+|+++|.+
T Consensus 457 ~l~~l~~~y~~~~~~-~Erf~~~i~R~G~~~~~~ 489 (497)
T 1aop_A 457 SLDELIGRWAKEREA-GEGFGDFTVRAGIIRPVL 489 (497)
T ss_dssp HHHHHHHHHHHHCCT-TCCHHHHHHHTTSSCCCS
T ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHCCCHHHHH
T ss_conf 999999999970877-996999999769387633
No 4
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=1.00 E-value=1 Score=807.60 Aligned_cols=483 Identities=24% Similarity=0.389 Sum_probs=423.3
Q ss_pred CCCCCHHHHHHHHCCCCCCCH---HHHHHHC-CCCC-----CHHHHH-HHHHCEEEEECCCCCCCCCCCEEEEEEECCCC
Q ss_conf 789993454421049975106---8865300-9999-----966778-66512347412577468764008999852997
Q 005543 68 ETKRSKVEIIKEQSNFIRYPL---NEELLTD-APNV-----NESATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCG 137 (691)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~~~---~~~~~~~-~~~~-----~~~~~~-~lk~~G~y~q~~r~~r~~~~~~fmlRir~pgG 137 (691)
..|+|++|++|++|+||+... ++++++. +++| ++++++ ++||+|+|+|+.+. .++||+|+|+|+|
T Consensus 70 ~~~l~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~r~k~~G~y~~~~~~-----~~~~mvRvr~PgG 144 (591)
T 3b0g_A 70 RKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQ-----YGRFMMRLKLPNG 144 (591)
T ss_dssp CTTCCHHHHHHHHSCTTHHHHTCHHHHHTTSCHHHHTTSHHHHHHHHTGGGGGTEEECTTTS-----TTEEEEECBCGGG
T ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCEEEEECCCC-----CCEEEEEECCCCC
T ss_conf 46788366665235773140132289886336310023569988999876242047731677-----8717998548981
Q ss_pred CCCHHHHHHHHHHHHHHC-CCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCEECCCCC-CCHHHH
Q ss_conf 458999999999999929-9919805899679807895899999999999719-9877778987520049998-862455
Q 005543 138 KVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDY 214 (691)
Q Consensus 138 ~lt~~ql~~la~ia~~yG-~g~i~lTtRQ~iqlhgI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RNV~acp~~-~~~~~~ 214 (691)
.+|++||+.|++||++|| +|++++|||||||||||.++|+++++++| .++| .+.++|||++|||++||++ .|..++
T Consensus 145 ~lt~~qlr~ladia~~yg~~G~i~~TtRq~iql~gi~~~~l~~i~~~L-~~~gl~~~~~~gd~~Rnv~~~p~~g~c~~~~ 223 (591)
T 3b0g_A 145 VTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGL-AEVGLTSLQSGMDNVRNPVGNPLAGIDPEEI 223 (591)
T ss_dssp EEEHHHHHHHHHHHHHTGGGCEEEECTTSCEEEEEEEGGGHHHHHHHH-HHTTCBCTTCSSSSBCCCBCCTTTTTCTTCS
T ss_pred EECHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCEEECCCCCCCCCHH
T ss_conf 478999999999999868997199967863798068888999999999-9859987767667887847288855685214
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 78999999999861897665311003532223589902342026899999999999987678889972299996699998
Q 005543 215 LFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS 294 (691)
Q Consensus 215 ~d~~~la~~i~~~l~p~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~nc 294 (691)
+|+++++.+|.++|.+++ .+.+...+|||||||+||||++||
T Consensus 224 ~D~~~~a~~l~~~l~~~~--------------------------------------~~~~~~~~LPrKfKiavsgc~~~c 265 (591)
T 3b0g_A 224 VDTRPYTNLLSQFITGNS--------------------------------------RGNPAVSNLPRKWNPCVVGSHDLY 265 (591)
T ss_dssp SCCHHHHHHHHHHHHTTT--------------------------------------TCCGGGSCCSSCBCEEECCCTTCT
T ss_pred HHHHHHHHHHHHHHHHCC--------------------------------------CCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 459999999999975203--------------------------------------578322356765489972476455
Q ss_pred CCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 4474487899999548996213999982787876776665674443358-999778999999999999993899840123
Q 005543 295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYS 373 (691)
Q Consensus 295 ~~~~~~Diglv~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~~~rd~G~R~~R~~a 373 (691)
+.+.+|||||+++.++ |. .||+|||||++|.++ |+++.++. ||++|++++++++|+.+|+++|+|.+|+++
T Consensus 266 ~~~~~~Dig~i~~~~~-g~-~Gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~~~~ai~~~~~~~G~r~~R~ka 337 (591)
T 3b0g_A 266 EHPHINDLAYMPATKD-GR-FGFNLLVGGFFSAKR------CDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKC 337 (591)
T ss_dssp TCGGGSSEEEEEEEET-TE-EEEEEEECCEECSSC------EECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGC
T ss_pred CCCCCCEEEEEEEECC-CC-CEEEEEECCCCCCCC------CCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 4452664899989818-97-248999856557888------631224036568999999999999999996663321220
Q ss_pred HHHHHHHHHCHHHHHHHHHHHH-CCCCCCCCC--C--CCCCCCCCCCEEEECC-CCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6999999418257999999994-998888888--9--8543456666486069-91899998189887799999999999
Q 005543 374 RMKYLISSWGIEKFRSVVEQYY-GKKFEPFRQ--L--PEWEFKSHLGWHEQGD-GGLFCGLHVDNGRIAGKMKKTLREII 447 (691)
Q Consensus 374 Rlk~li~~~G~e~f~e~ve~~~-g~~l~~~~~--~--~~~~~~d~~G~~~q~d-G~~~v~i~vp~Grit~~ql~~La~iA 447 (691)
|++|+|++||+++|++++++++ +.++.+..+ . ..|...+|+||++|++ |.|++++++|+|+++++||+.||+||
T Consensus 338 R~~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~~qk~~g~~~v~v~~p~Grlt~~~Lr~LadiA 417 (591)
T 3b0g_A 338 RMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLA 417 (591)
T ss_dssp SHHHHHHHHCHHHHHHHHHHTSGGGCCBCCCSCCSCCSSCCCCCCSEEEECSSTTEEEEEECCGGGEECHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 18999986157999999998743586787765465433433356665042376971899996777578899999999999
Q ss_pred HHHCC-EEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99199-29976798479825894698999999998899989988988652885589999910477898339999999999
Q 005543 448 EKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRA 526 (691)
Q Consensus 448 e~yg~-~IrlT~~QnI~L~gI~~e~~~~i~~~L~~~GL~~~~~~~~~~r~v~aC~G~~~C~~ai~Dt~~~a~~l~~~l~~ 526 (691)
++||. .+|+|+||||+|++|+.++++++++.|...++... .++.+|+++||||+++|+++++||++++..|.++++.
T Consensus 418 e~yg~g~irlT~~QnI~l~~v~~e~l~~l~~el~~~~~~~~--~g~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~ 495 (591)
T 3b0g_A 418 DEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPD--PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQR 495 (591)
T ss_dssp HHHSSSEEEECTTSCEEEEEEEGGGHHHHTTCGGGGTSCSS--CCHHHHTCEECCGGGTCTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98399869987888647679998899999999875447778--8877453135889665752465599999999999998
Q ss_pred HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEC--------CCEEEEEECCCCC-CCCCHHHHCCCCCHHHHHHH
Q ss_conf 89860777887428999769999987644517999341--------7529999747679-95211152058996669999
Q 005543 527 VFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--------PNSYQIWLGGTHN-QTTLARTFMNKVKVQELEKV 597 (691)
Q Consensus 527 ~~~~~gl~~p~kikI~iSGCpn~Ca~~~~aDIGlvG~g--------~~gy~I~iGG~~~-~~rlg~~l~~~v~~eei~~~ 597 (691)
. . .+|.||+|+||||||+|++++++||||+|.. ..+|+||+||+.+ ++++|+++..+|+.++++++
T Consensus 496 ~---~--~lp~k~kI~iSGCpn~C~~~~~aDIG~vG~~~~~~~G~~~~gy~v~lGG~~g~~~rlg~~l~~~v~~eev~~~ 570 (591)
T 3b0g_A 496 Q---V--SLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPL 570 (591)
T ss_dssp H---E--ECCSCCCEEEESSTTCTTCGGGSSEEEEEEEEECTTSCEEEEEEEEECCBCSSSCBCCEEEEEEEEGGGHHHH
T ss_pred H---C--CCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCHHHHHHH
T ss_conf 6---3--7886438998389875667651668999776337888515626999898579887413487568889999999
Q ss_pred HHHHHH-HHHHHC
Q ss_conf 999999-999960
Q 005543 598 FEPLFY-YWKQKR 609 (691)
Q Consensus 598 i~~ll~-~y~~~~ 609 (691)
+++++. .|.+..
T Consensus 571 i~~ll~~~y~~~~ 583 (591)
T 3b0g_A 571 VVDLLVNNFGAVP 583 (591)
T ss_dssp HHHHHHHHSCCEE
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999976441
No 5
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=1.00 E-value=1 Score=806.77 Aligned_cols=483 Identities=24% Similarity=0.378 Sum_probs=424.6
Q ss_pred CCCCCHHHHHHHHCCCCCCCH---HHHHHHC-CCCC-----CHHHHH-HHHHCEEEEECCCCCCCCCCCEEEEEEECCCC
Q ss_conf 789993454421049975106---8865300-9999-----966778-66512347412577468764008999852997
Q 005543 68 ETKRSKVEIIKEQSNFIRYPL---NEELLTD-APNV-----NESATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCG 137 (691)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~~~---~~~~~~~-~~~~-----~~~~~~-~lk~~G~y~q~~r~~r~~~~~~fmlRir~pgG 137 (691)
..|+|++|++|++|+||+... ++++++. +++| ++++++ ++||||+|+|+.+. .++||+|+|+|+|
T Consensus 87 ~~~l~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~r~~~~-----~~~~mvRvr~PgG 161 (608)
T 2akj_A 87 RSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHRRKHH-----YGRFMMRLKLPNG 161 (608)
T ss_dssp CSSCCHHHHHHHHSCTTHHHHTCHHHHHTTCCHHHHTTSHHHHHHHHTGGGGGTEEECHHHH-----TTCEEEECCCGGG
T ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCC-----CCEEEEEECCCCC
T ss_conf 56788366665225774350132289885336210013569988999887233305514677-----8259999657886
Q ss_pred CCCHHHHHHHHHHHHHHC-CCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCEECCCCC-CCHHHH
Q ss_conf 458999999999999929-9919805899679807895899999999999719-9877778987520049998-862455
Q 005543 138 KVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDY 214 (691)
Q Consensus 138 ~lt~~ql~~la~ia~~yG-~g~i~lTtRQ~iqlhgI~~~~l~~v~~~L~~~~g-~t~~a~GD~~RNV~acp~~-~~~~~~ 214 (691)
.+|++||+.|++||++|| +|++++|||||||||||.++++++++++| .++| .+.++|||++|||++||++ .|..++
T Consensus 162 ~lt~~qlr~ladiA~kyg~~G~i~lTtRq~iql~gi~~e~l~~i~~~L-~~~Gl~~~~~~gd~~Rnv~~~p~~g~c~~~~ 240 (608)
T 2akj_A 162 VTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGL-ESVGLTSLQSGMDNVRNPVGNPLAGIDPHEI 240 (608)
T ss_dssp EEEHHHHHHHHHHHHTTGGGCCEEECTTSCEEEEEECGGGHHHHHHHH-HTTTCCCTTCSSSSBCCCBCCTTTTTCTTCS
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCEEECCCCCCCCCHH
T ss_conf 459999999999999859997299966863698078888899999999-9859987777677888857288855684025
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 78999999999861897665311003532223589902342026899999999999987678889972299996699998
Q 005543 215 LFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS 294 (691)
Q Consensus 215 ~d~~~la~~i~~~l~p~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~nc 294 (691)
+|+++++.+|.++|.++. .+.++..+|||||||+||||++||
T Consensus 241 ~D~~~~a~~l~~~l~~~~--------------------------------------~~~~~~~~LPrKfKiavsgc~~~c 282 (608)
T 2akj_A 241 VDTRPFTNLISQFVTANS--------------------------------------RGNLSITNLPRKWNPCVIGSHDLY 282 (608)
T ss_dssp SCCHHHHHHHHHHHTTTT--------------------------------------TCCGGGSCCSSCBCEEECCCTTCT
T ss_pred HHHHHHHHHHHHHHHHCC--------------------------------------CCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 569999999999875103--------------------------------------578421256763489863686354
Q ss_pred CCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 4474487899999548996213999982787876776665674443358-999778999999999999993899840123
Q 005543 295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYS 373 (691)
Q Consensus 295 ~~~~~~Diglv~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~~~rd~G~R~~R~~a 373 (691)
+++++|||||++++++ | ..||+|||||++|.++ |+.+.++. ||++|++++++++|+.+|+++|+|.+|+++
T Consensus 283 ~~~~~~Dig~i~~~~~-g-~~Gf~v~vGGg~g~~~------~~~~~~l~~~v~~eev~~~~~ai~~~~~~~G~r~~R~~a 354 (608)
T 2akj_A 283 EHPHINDLAYMPATKN-G-KFGFNLLVGGFFSIKR------CEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKC 354 (608)
T ss_dssp TCGGGSSEEEEEEESS-S-SEEEEEEECCEECSSC------EECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGC
T ss_pred CCCCCCEEEEEEEEEC-C-CCEEEEEECCCCCCCC------CCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 3453661899979808-9-5279999776557777------632403036568999999999999999986772211211
Q ss_pred HHHHHHHHHCHHHHHHHHHHHH-CCCCCCCCCC----CCCCCCCCCCEEEEC-CCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6999999418257999999994-9988888889----854345666648606-991899998189887799999999999
Q 005543 374 RMKYLISSWGIEKFRSVVEQYY-GKKFEPFRQL----PEWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREII 447 (691)
Q Consensus 374 Rlk~li~~~G~e~f~e~ve~~~-g~~l~~~~~~----~~~~~~d~~G~~~q~-dG~~~v~i~vp~Grit~~ql~~La~iA 447 (691)
|++|+|++||+++|++++++++ +.++.+..+. ..|...+|+||++|+ +|.|++++++|+|+++++||+.||+||
T Consensus 355 Rl~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~Grlt~~qLr~LadiA 434 (608)
T 2akj_A 355 RMMWLIDELGMEAFRGEVEKRMPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIA 434 (608)
T ss_dssp SHHHHHHHHCHHHHHHHHHTTSTTSCCCCCCSCBCSCSSCCCCCCBEEEECSSTTEEEEEECCGGGEECHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 57889875062778999998741587776765555432100134445030575975999996777538899999999999
Q ss_pred HHHCC-EEEECCCCCEEECCCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99199-29976798479825894698999999998-89998998898865288558999991047789833999999999
Q 005543 448 EKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQ-AGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIR 525 (691)
Q Consensus 448 e~yg~-~IrlT~~QnI~L~gI~~e~~~~i~~~L~~-~GL~~~~~~~~~~r~v~aC~G~~~C~~ai~Dt~~~a~~l~~~l~ 525 (691)
++||. .+|+|+||||+|++|+.++++++++.|.. .++... .++.+|++++|||+++|+++++||++++..|.++++
T Consensus 435 e~yg~G~irlT~~QnIil~~v~~e~l~~l~~el~~~~~~~~~--~g~~~r~i~aC~G~~~C~~a~~Dt~~~a~~l~~~l~ 512 (608)
T 2akj_A 435 DVYGSGELRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSPE--PPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQ 512 (608)
T ss_dssp HHHSSSEEEEETTTEEEEEEEETTTHHHHTTSHHHHTTSCSS--CCTTTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHH
T ss_pred HHHCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 984998699878887487888888899999987654066778--886536445078978787323337999999999999
Q ss_pred HHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEC--------CCEEEEEECCCCC-CCCCHHHHCCCCCHHHHHH
Q ss_conf 989860777887428999769999987644517999341--------7529999747679-9521115205899666999
Q 005543 526 AVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--------PNSYQIWLGGTHN-QTTLARTFMNKVKVQELEK 596 (691)
Q Consensus 526 ~~~~~~gl~~p~kikI~iSGCpn~Ca~~~~aDIGlvG~g--------~~gy~I~iGG~~~-~~rlg~~l~~~v~~eei~~ 596 (691)
..+ .+|.||+|+||||||+|++++++||||+|+. ..+|+||+||+.+ ++++|+.+..+|+.+++++
T Consensus 513 ~~~-----~lp~k~kI~vSGCpn~Ca~~~iaDIGlvG~~~~~~~G~~~~gy~v~lGG~~g~~~rlg~~l~~~v~~eev~~ 587 (608)
T 2akj_A 513 RLV-----SVTRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVP 587 (608)
T ss_dssp HHE-----ECSSCCEEEEESSTTCTTCGGGSSEEEEEEEEECTTCCEEEEEEEEECCBCSTTCBCCEEEEEEEETTTHHH
T ss_pred HHC-----CCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCHHHHHH
T ss_conf 862-----788652799848987554442332689977413678853451799989817887731447655878999999
Q ss_pred HHHHHHH-HHHHHC
Q ss_conf 9999999-999960
Q 005543 597 VFEPLFY-YWKQKR 609 (691)
Q Consensus 597 ~i~~ll~-~y~~~~ 609 (691)
++++++. .|.+..
T Consensus 588 ~l~~ll~~~y~~~~ 601 (608)
T 2akj_A 588 VVAEILINQFGAVP 601 (608)
T ss_dssp HHHHHHHHHSCCEE
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999876431
No 6
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=1.00 E-value=1 Score=325.72 Aligned_cols=215 Identities=22% Similarity=0.308 Sum_probs=190.2
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-------CCCCCCCCC
Q ss_conf 0089998529974589999999999999299919805899679807895899999999999719-------987777898
Q 005543 126 YSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-------STLGACGDL 198 (691)
Q Consensus 126 ~~fmlRir~pgG~lt~~ql~~la~ia~~yG~g~i~lTtRQ~iqlhgI~~~~l~~v~~~L~~~~g-------~t~~a~GD~ 198 (691)
+.||+|++.| |.+|++||+.|++||++||+|++++|||||||||||.++++++++++| .+.| .+++++|+.
T Consensus 61 ~~~tvRv~~p-G~lt~~qLr~LadiA~kyg~G~irlTtrqnI~l~gi~~e~l~~l~~~L-~~~Gl~~~~~~~~~g~~G~~ 138 (386)
T 3or1_B 61 KVFTVRCGAA-RLMSTSHIREACEIAKKFCNGHLRFTTRNNIEFMVDNEETLKALVADL-KTRKFAAGSFKFPIGGTGAS 138 (386)
T ss_dssp EEEEEEECCC-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHH-TTCBCTTSCBSSCBCCCSSS
T ss_pred CEEEEEECCC-CEECHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCC
T ss_conf 0899996899-552899999999999996899598879982999628999999999999-85598766667875666776
Q ss_pred CCCEECCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7520049998-862455789999999998618976653110035322235899023420268999999999999876788
Q 005543 199 NRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQ 277 (691)
Q Consensus 199 ~RNV~acp~~-~~~~~~~d~~~la~~i~~~l~p~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~ 277 (691)
+|||++||++ +|..+..|+.+++.+|.+.|.+ .|...
T Consensus 139 vRni~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~------------------------------------------~~~~~ 176 (386)
T 3or1_B 139 ISNIVHTQGWVYCHTPATDASGPVKAVMDELFE------------------------------------------EFTSM 176 (386)
T ss_dssp CCCCBCCCGGGTCSSCSSCSHHHHHHHHHHTHH------------------------------------------HHSCC
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH------------------------------------------HHHCC
T ss_conf 342685687545641677799999999999987------------------------------------------64023
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEEEEECC----------------------------------CC-----------
Q ss_conf 899722999966999984474487899999548----------------------------------99-----------
Q 005543 278 FLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE----------------------------------NG----------- 312 (691)
Q Consensus 278 ~LPrKfKi~isg~~~nc~~~~~~Diglv~~~~~----------------------------------~g----------- 312 (691)
.||+||||+||||+++|+.++++||||++++.+ +|
T Consensus 177 ~LP~K~kI~vsGCpn~C~~~~~~Dig~vg~~r~~p~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~ 256 (386)
T 3or1_B 177 RLPAIVRVSLACCINMCGAVHCSDIGLVGIHRKPPMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINND 256 (386)
T ss_dssp CSSSCCCEEEESSTTCCSSGGGSSEEEEEECCSCCCCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTT
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHCCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54323577303686443122223434311235440442445014566133565191632645433568852000004787
Q ss_pred --------------------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCH-----HHHHHHHHHHHHHHHHHCC
Q ss_conf --------------------6213999982787876776665674443358-9997-----7899999999999999389
Q 005543 313 --------------------EPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----EDILYAVKAIVVTQRENGR 366 (691)
Q Consensus 313 --------------------~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~-----eev~~~~~ai~~~~rd~G~ 366 (691)
+..|+.|++||+.|... ..|++|+.+. |++. +++.+++++|+.+|+++|+
T Consensus 257 ~Ci~Cg~C~~~CP~~Ai~~~~~~g~~i~vGGk~~~~~----~~~~~~~~l~~~~~~e~~~~~e~~~~i~~i~~~~~e~g~ 332 (386)
T 3or1_B 257 RCMYCGNCYTMCPALPLSDGTGDGIAIMVGGKISNRI----KVPSFSKVVVAFVPNEPPRWPTMAKIVKKIVEVYAEDAR 332 (386)
T ss_dssp TCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCCCSS----SCCBCCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCHHHHCCHHHCCCCCCCEEEEEECCCCCCCC----CCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 6884013777695833747888458999844247666----666101101055466775478999999999999998787
Q ss_pred CCCCHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 98401236999999418257999999
Q 005543 367 RDDRKYSRMKYLISSWGIEKFRSVVE 392 (691)
Q Consensus 367 R~~R~~aRlk~li~~~G~e~f~e~ve 392 (691)
+++||+++|+|+|+++|+++++
T Consensus 333 ----~~ER~g~~i~R~G~~~f~~~~~ 354 (386)
T 3or1_B 333 ----KYERIGDWIHRIGWETFYEKTG 354 (386)
T ss_dssp ----TTCCHHHHHHHHCHHHHHHHHC
T ss_pred ----CCCCHHHHHHHCCHHHHHHHHC
T ss_conf ----6777999999819999999977
No 7
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=1.00 E-value=1 Score=321.64 Aligned_cols=218 Identities=17% Similarity=0.219 Sum_probs=191.8
Q ss_pred CCCCEEEEEEECCCCC-CCHHHHHHHHHHHHHHCCCEEEEC-CCCCEEECCCCCCCHHHHHHHHHH--HCCCCCCCCCCC
Q ss_conf 7640089998529974-589999999999999299919805-899679807895899999999999--719987777898
Q 005543 123 AKSYSFMLRTKNPCGK-VSNQLYLTMDDLADQFGIGTLRLT-TRQTFQLHGVLKKDLKTVMRSIIR--SMGSTLGACGDL 198 (691)
Q Consensus 123 ~~~~~fmlRir~pgG~-lt~~ql~~la~ia~~yG~g~i~lT-tRQ~iqlhgI~~~~l~~v~~~L~~--~~g~t~~a~GD~ 198 (691)
+..+.||+|+++|+|+ +|++||+.|++||++||+|++++| |||||||+||..+++++++++| . +.|.+++++|+.
T Consensus 91 ~~~~~~tvRv~~P~Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv~~e~l~~i~~eL-~~~~~Gl~~ggsG~~ 169 (418)
T 3mm5_A 91 EVEHFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGTRSEYLQPCFEDL-GNLEIPFDIGGSGSD 169 (418)
T ss_dssp GGSBCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEECHHHHHHHHHHH-HHSSSCCCBCCCSSS
T ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCHHHHHHHHHHH-HCCCCCCCCCCCCCC
T ss_conf 7324789998578886349999999999999858987998358876586789989999999998-612345776775665
Q ss_pred CCCEECCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7520049998-862455789999999998618976653110035322235899023420268999999999999876788
Q 005543 199 NRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQ 277 (691)
Q Consensus 199 ~RNV~acp~~-~~~~~~~d~~~la~~i~~~l~p~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~ 277 (691)
+||+++||+. +|..+..|+++++..|.+.|.. . +...
T Consensus 170 vRni~aC~G~~~C~~a~~Dt~~la~~L~~~l~~-------~-----------------------------------~~~~ 207 (418)
T 3mm5_A 170 LRTPSACMGPALCEFACYDTLELCYDLTMTYQD-------E-----------------------------------LHRP 207 (418)
T ss_dssp BCCCEECCGGGTCTTCSSCHHHHHHHHHHHTHH-------H-----------------------------------HHSC
T ss_pred CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH-------H-----------------------------------HHHC
T ss_conf 511372577565630023189999999999987-------6-----------------------------------5412
Q ss_pred CCCCCEEEEEECCCCCCCCC-CCCCEEEEEEECC----------------------------------------------
Q ss_conf 89972299996699998447-4487899999548----------------------------------------------
Q 005543 278 FLPRKFKVAVTVPTDNSVDI-LTNDIGVVVVSDE---------------------------------------------- 310 (691)
Q Consensus 278 ~LPrKfKi~isg~~~nc~~~-~~~Diglv~~~~~---------------------------------------------- 310 (691)
.||+||||+||||+++|+.+ ..+||||++++++
T Consensus 208 ~LP~KfKI~iSGCpN~C~~~~~~~DIGiiG~~r~~~~iD~e~~~~~~~gc~i~~~cv~~CPt~Ai~~~~~~~~id~~~Ci 287 (418)
T 3mm5_A 208 MWPYKFKIKCAGCPNDCVASKARSDFAIIGTWKDDIKVDQEAVKEYASWMDIENEVVKLCPTGAIKWDGKELTIDNRECV 287 (418)
T ss_dssp CSSSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHHHHHHHHTTSCHHHHTGGGCTTCCEEECSSCEEECTTTCC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHCC
T ss_conf 58850588640456431647876255321344653335678775432566647641124971115057762688704467
Q ss_pred --------------CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCC----HHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf --------------996213999982787876776665674443358-999----7789999999999999938998401
Q 005543 311 --------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVP----KEDILYAVKAIVVTQRENGRRDDRK 371 (691)
Q Consensus 311 --------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~----~eev~~~~~ai~~~~rd~G~R~~R~ 371 (691)
.+...||.|++||+.+.. ..|+++..+. |++ .|++++++++|+++|+++|+ +
T Consensus 288 ~Cg~Ci~~CP~~~~~~~~~g~~I~vGGk~~~~-----~g~~lg~~~~pf~~~~~p~eei~~~ie~i~~~~~e~g~----~ 358 (418)
T 3mm5_A 288 RCMHCINKMPKALKPGDERGATILIGGKAPFV-----EGAVIGWVAVPFVEVEKPYDEIKEILEAIWDWWDEEGK----F 358 (418)
T ss_dssp CCCHHHHHCTTTEECCSSEEEEEEECCBCSTT-----TCCBCCEEEEEEECCCTTCHHHHHHHHHHHHHHHHHCC----T
T ss_pred CCCHHHHHCCHHHCCCCCCCEEEEEECCCCCC-----CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC----C
T ss_conf 65816776967210288787599971898644-----56634256611145789889999999999999998588----8
Q ss_pred HHHHHHHHHHHCHHHHHHHHH
Q ss_conf 236999999418257999999
Q 005543 372 YSRMKYLISSWGIEKFRSVVE 392 (691)
Q Consensus 372 ~aRlk~li~~~G~e~f~e~ve 392 (691)
++||+++|+|+|+++|++.++
T Consensus 359 ~ER~g~~i~RiG~~~F~e~v~ 379 (418)
T 3mm5_A 359 RERIGELIWRKGMREFLKVIG 379 (418)
T ss_dssp TCCHHHHHHHHCHHHHHHHTT
T ss_pred CCCHHHHHHHCCHHHHHHHHC
T ss_conf 886989999729899999977
No 8
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=1.00 E-value=1 Score=315.17 Aligned_cols=230 Identities=17% Similarity=0.259 Sum_probs=196.9
Q ss_pred HHCEEEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf 51234741257746876400899985299745899999999999992999198058996798078958999999999997
Q 005543 108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRS 187 (691)
Q Consensus 108 k~~G~y~q~~r~~r~~~~~~fmlRir~pgG~lt~~ql~~la~ia~~yG~g~i~lTtRQ~iqlhgI~~~~l~~v~~~L~~~ 187 (691)
+-.|++.|.+.. .++.||+|+++|+ .+|++||+.|++||++||+|++|+||||||||+||..+++++++++| .+
T Consensus 36 ~~~Gv~~~~~e~----gd~~~~vRv~~p~-~lt~~qlr~ladiA~kyg~G~lrlTtrqni~l~gv~~~~l~~l~~~L-~~ 109 (366)
T 3mm5_B 36 VKPGVIKRVAES----GDVIYVVRFGTPR-LLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEV-QE 109 (366)
T ss_dssp EETTEEEEEETT----SCEEEEEEECCCS-EEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESCGGGHHHHHHHH-HH
T ss_pred CCCCEEEEECCC----CCCEEEEEECCCC-CCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCHHHHHHHHHHH-HH
T ss_conf 789779865467----9956999977761-53799999999999996898388858870899559999999999999-87
Q ss_pred C-CCCCCCC-CC-----CCCCEECCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 1-9987777-89-----87520049998-862455789999999998618976653110035322235899023420268
Q 005543 188 M-GSTLGAC-GD-----LNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARND 259 (691)
Q Consensus 188 ~-g~t~~a~-GD-----~~RNV~acp~~-~~~~~~~d~~~la~~i~~~l~p~~~~y~~i~~~~~~~~~~~~~~~~~~~~~ 259 (691)
. |.+++++ |+ .+|||++||++ +|..+..|+++++.+|.+.|.+
T Consensus 110 ~~Gl~~g~~~G~~~~~~~~rni~aC~g~~~C~~a~~Dt~~~a~~l~~~l~~----------------------------- 160 (366)
T 3mm5_B 110 RVGFPCGGTWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYE----------------------------- 160 (366)
T ss_dssp HHCCCBCCCEETTTTEECCCCCBCCCHHHHCSSCSSCSHHHHHHHHHHTHH-----------------------------
T ss_pred HCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_conf 409895424687666552220025888555651777799999999999877-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECC-----------------------------
Q ss_conf 999999999999876788899722999966999984474487899999548-----------------------------
Q 005543 260 NSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE----------------------------- 310 (691)
Q Consensus 260 ~~~~~~~~~~~e~~yg~~~LPrKfKi~isg~~~nc~~~~~~Diglv~~~~~----------------------------- 310 (691)
.|....||+||||+||||+++|+.+..+||||++++..
T Consensus 161 -------------~~~~~~LP~k~kI~vsgC~~~C~~~~~~Dig~~g~~r~~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~ 227 (366)
T 3mm5_B 161 -------------YFTDHKLPAMCRISLACCANMCGAVHASDIAIVGIHRTPPIPNDEAIRKTCEIPSTVAACPTGALKP 227 (366)
T ss_dssp -------------HHHSCCBSSCCCEEEESSTTCSSSGGGSSEEEEEECCSCCCCCHHHHHHHCCHHHHHHTCTTCCEEE
T ss_pred -------------HHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCCCCCCCHHCCCCCCCEEE
T ss_conf -------------5103233545202244675565023233433322434304876122045566223122498555575
Q ss_pred ------------------------------CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCH-----HHHHHHH
Q ss_conf ------------------------------996213999982787876776665674443358-9997-----7899999
Q 005543 311 ------------------------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----EDILYAV 354 (691)
Q Consensus 311 ------------------------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~-----eev~~~~ 354 (691)
.+...|+.+++||++|.. ...|++|+.+. |++. +++++++
T Consensus 228 ~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~~~~~~g~~i~vGgk~~~~----~~~~~lg~~~~~~~~~~~p~~~ev~~~v 303 (366)
T 3mm5_B 228 DMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAIMVGGKLSEA----RRMPELSKVVVPWVPNEPPRWPTLVKYV 303 (366)
T ss_dssp ETTTTEEEECGGGCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCSCT----TSCCBCCEEEEEEEECCTTTCHHHHHHH
T ss_pred CCCCCEEEEEHHHCCCCCHHHHHCCHHHCCCCCCCCEEEEECCCCCCC----CCCCCCCCHHHCCCCCCCCCHHHHHHHH
T ss_conf 178975998514578854677769795565566776399976866666----6667403432235667885447899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 999999999389984012369999994182579999999
Q 005543 355 KAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393 (691)
Q Consensus 355 ~ai~~~~rd~G~R~~R~~aRlk~li~~~G~e~f~e~ve~ 393 (691)
++++.+|+++|+ +++||+++|+|+|+++|+++++.
T Consensus 304 ~~i~~~y~~~g~----~~eR~~~~i~r~G~~~f~~~~~~ 338 (366)
T 3mm5_B 304 KQILEAWAANAN----KHERLIEWVDRIGWERFFELTGL 338 (366)
T ss_dssp HHHHHHHHHHCC----TTCCHHHHHHHHCHHHHHHHHTC
T ss_pred HHHHHHHHHHCC----CCCCHHHHHHHHCHHHHHHHHCC
T ss_conf 999999997687----65619999998599999999779
No 9
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=1.00 E-value=1 Score=312.29 Aligned_cols=219 Identities=16% Similarity=0.189 Sum_probs=191.1
Q ss_pred CCCCEEEEEEECCCCC-CCHHHHHHHHHHHHHHCCCEEEECCC-CCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 7640089998529974-58999999999999929991980589-967980789589999999999971998777789875
Q 005543 123 AKSYSFMLRTKNPCGK-VSNQLYLTMDDLADQFGIGTLRLTTR-QTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNR 200 (691)
Q Consensus 123 ~~~~~fmlRir~pgG~-lt~~ql~~la~ia~~yG~g~i~lTtR-Q~iqlhgI~~~~l~~v~~~L~~~~g~t~~a~GD~~R 200 (691)
+..++||+|+++|+|+ +|++||+.|++||++||+|++++||| |||||+||..+++++++++|.+++|.+++++|+.+|
T Consensus 93 ~v~~~~tVRV~~P~Gr~lTaeqLR~LadIAekyG~G~irlTt~rqNI~L~gi~~e~le~l~~eL~~~~Gl~~ggsG~~vR 172 (437)
T 3or1_A 93 GVAHFHTVRLAQPAAKYYTAEYLEAICDVWDLRGSGLTNMHGSTGDIVLLGTQTPQLEEIFFEMTHNLNTDLGGSGSNLR 172 (437)
T ss_dssp GGSBCCEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEECCCGGGHHHHHHHHHHHSCCCBCCCSSSBC
T ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 72158999985788872199999999999999699989986763509995588899999999998505767555677402
Q ss_pred CEECCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20049998-86245578999999999861897665311003532223589902342026899999999999987678889
Q 005543 201 NVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFL 279 (691)
Q Consensus 201 NV~acp~~-~~~~~~~d~~~la~~i~~~l~p~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~~L 279 (691)
||++||+. +|..+..|+++++.+|.+.|.. . +....|
T Consensus 173 nivaC~G~~~C~~a~~DT~~la~~L~~~l~~-------~-----------------------------------~~~~~L 210 (437)
T 3or1_A 173 TPESCLGISRCEFACYDTQLMCYQLTQDYQD-------E-----------------------------------LHRPAF 210 (437)
T ss_dssp CCEECCGGGSCSSCCSCHHHHHHHHHHHTHH-------H-----------------------------------HHSCCS
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHH-------C-----------------------------------CCCCCC
T ss_conf 2454656666576333552011346765430-------2-----------------------------------211358
Q ss_pred CCCEEEEEECCCCCCCCC-CCCCEEEEEEECCC-----------------------------------------------
Q ss_conf 972299996699998447-44878999995489-----------------------------------------------
Q 005543 280 PRKFKVAVTVPTDNSVDI-LTNDIGVVVVSDEN----------------------------------------------- 311 (691)
Q Consensus 280 PrKfKi~isg~~~nc~~~-~~~Diglv~~~~~~----------------------------------------------- 311 (691)
|+||||+||||+++|+.+ .++||||+++++++
T Consensus 211 P~KfKI~iSGCpN~C~~~v~~aDIGiiG~~r~~i~id~~~v~~~~~~e~~~~~~a~~g~~~~~~di~~~vv~~CPt~ai~ 290 (437)
T 3or1_A 211 PYKFKFKFDGCPNGCVASMARSDFAVIGTWKDDIKIDQEAVKAYVGGEFKPNAGAHAGRDWGKFDIEAEVVGLCPTGCMT 290 (437)
T ss_dssp SSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHHHHHHHHHTSSCGGGGTTTTSCCCSCCHHHHTTTTCTTCCEE
T ss_pred CCEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHEE
T ss_conf 85036753034322201232125544440168774488999887624778765555667676553121222019287525
Q ss_pred -----------------------------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCC----HHHHHHHHHHH
Q ss_conf -----------------------------96213999982787876776665674443358-999----77899999999
Q 005543 312 -----------------------------GEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVP----KEDILYAVKAI 357 (691)
Q Consensus 312 -----------------------------g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~----~eev~~~~~ai 357 (691)
+...||.|+|||+.+.. ..|++++.+. |++ .+++.+++++|
T Consensus 291 ~~~~~l~Id~~~C~~Cg~Ci~~CP~al~~~~~~G~~ilvGgk~~i~-----~g~~l~~~~~pf~~~~~p~~ei~~~i~~i 365 (437)
T 3or1_A 291 YESGTLSIDNKNCTRCMHCINTMPRALKIGDERGASILVGAKAPVL-----DGAQMGSLLIPFIAAEEPFDEVKEVIENI 365 (437)
T ss_dssp EETTEEEECGGGCCCCSHHHHHCTTTEECCSSEEEEEEECCBCSTT-----TCCBCCEEEEEEECCCTTCHHHHHHHHHH
T ss_pred ECCCEEEECCCCCCCHHHHHHHCCHHHCCCCCCCEEEEEECCCCCC-----CCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 2399899813008732426756958333588786699971798765-----67735456530356888779999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 99999938998401236999999418257999999
Q 005543 358 VVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE 392 (691)
Q Consensus 358 ~~~~rd~G~R~~R~~aRlk~li~~~G~e~f~e~ve 392 (691)
+++|.++|. +++|++++|+|+|+++|.+.++
T Consensus 366 ~~~~~e~gk----~~ER~ge~i~R~G~~~f~e~~~ 396 (437)
T 3or1_A 366 WEWWMEEGK----NRERLGETMKRVGFQKLLEVTG 396 (437)
T ss_dssp HHHHHHHSC----TTCCHHHHHHHHCHHHHHHHTT
T ss_pred HHHHHHCCC----CCCCHHHHHHHCCHHHHHHHHC
T ss_conf 999997288----7761889999719999999978
No 10
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=1.00 E-value=1 Score=307.64 Aligned_cols=255 Identities=15% Similarity=0.133 Sum_probs=218.3
Q ss_pred CCCCEEEEC---CCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-C-EEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 666648606---9918999981898877999999999999919-9-2997679847982589469899999999889998
Q 005543 412 SHLGWHEQG---DGGLFCGLHVDNGRIAGKMKKTLREIIEKYN-L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLL 486 (691)
Q Consensus 412 d~~G~~~q~---dG~~~v~i~vp~Grit~~ql~~La~iAe~yg-~-~IrlT~~QnI~L~gI~~e~~~~i~~~L~~~GL~~ 486 (691)
.+.|++.|. ++.|++|+++|+|.+|++|++.|++||++|| + .+++|+||||||+||+.++++++++.|.+.||.+
T Consensus 137 k~~G~y~r~~~~~~~~mvRvr~PgG~lt~~qlr~ladiA~kyg~~G~i~lTtRq~iql~gi~~e~l~~i~~~L~~~Gl~~ 216 (608)
T 2akj_A 137 KWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGLESVGLTS 216 (608)
T ss_dssp GGGTEEECHHHHTTCEEEECCCGGGEEEHHHHHHHHHHHHTTGGGCCEEECTTSCEEEEEECGGGHHHHHHHHHTTTCCC
T ss_pred HHCCEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 23330551467782599996578864599999999999998599972999668636980788888999999999859987
Q ss_pred CCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEC
Q ss_conf 998898865288558999991047789833999999999989--860777887428999769999987644517999341
Q 005543 487 PRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVF--EKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG 564 (691)
Q Consensus 487 ~~~~~~~~r~v~aC~G~~~C~~ai~Dt~~~a~~l~~~l~~~~--~~~gl~~p~kikI~iSGCpn~Ca~~~~aDIGlvG~g 564 (691)
..++++.+||+++||++..|..++.|+.+++..|.+++.... ......+|+||||+||||||+|+.++++||||++..
T Consensus 217 ~~~~gd~~Rnv~~~p~~g~c~~~~~D~~~~a~~l~~~l~~~~~~~~~~~~LPrKfKiavsgc~~~c~~~~~~Dig~i~~~ 296 (608)
T 2akj_A 217 LQSGMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLYEHPHINDLAYMPAT 296 (608)
T ss_dssp TTCSSSSBCCCBCCTTTTTCTTCSSCCHHHHHHHHHHHTTTTTCCGGGSCCSSCBCEEECCCTTCTTCGGGSSEEEEEEE
T ss_pred CCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEE
T ss_conf 77767788885728885568402556999999999987510357842125676348986368635434536618999798
Q ss_pred ---CCEEEEEECCCCC--CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHCHHHHHHHHHHHC
Q ss_conf ---7529999747679--9521115205899666999999999999996014---8983768998429799999998670
Q 005543 565 ---PNSYQIWLGGTHN--QTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWE 636 (691)
Q Consensus 565 ---~~gy~I~iGG~~~--~~rlg~~l~~~v~~eei~~~i~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~l~~~l~~~~ 636 (691)
..||+||+||..+ .++++.++..+|+.+++++++++++.+|++++.+ ..+|++++++|+|++.|++.+++++
T Consensus 297 ~~g~~Gf~v~vGGg~g~~~~~~~~~l~~~v~~eev~~~~~ai~~~~~~~G~r~~R~~aRl~~li~~~G~e~f~~~v~~~~ 376 (608)
T 2akj_A 297 KNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRM 376 (608)
T ss_dssp SSSSEEEEEEECCEECSSCEECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGCSHHHHHHHHCHHHHHHHHHTTS
T ss_pred ECCCCEEEEEECCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 08952799997765577776324030365689999999999999999867722112115788987506277899999874
Q ss_pred -CC-----C----C-----C------------------CCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf -98-----3----1-----0------------------112365546768899999999988323
Q 005543 637 -GP-----A----K-----A------------------TARYNLKLFADKETYEAVDELAKLQNK 668 (691)
Q Consensus 637 -~~-----~----~-----~------------------~~~~~~~L~~~~~~~~~l~~~a~~~~~ 668 (691)
+. . . . ...|.|+| .+++++.++++++..+.
T Consensus 377 ~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~Grl--t~~qLr~LadiAe~yg~ 439 (608)
T 2akj_A 377 PEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRL--QADEMEELARIADVYGS 439 (608)
T ss_dssp TTSCCCCCCSCBCSCSSCCCCCCBEEEECSSTTEEEEEECCGGGEE--CHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCC--CHHHHHHHHHHHHHHCC
T ss_conf 1587776765555432100134445030575975999996777538--89999999999998499
Done!