BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005544
(691 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FQ09|KU80_ARATH ATP-dependent DNA helicase 2 subunit KU80 OS=Arabidopsis thaliana
GN=KU80 PE=1 SV=1
Length = 680
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/687 (61%), Positives = 538/687 (78%), Gaps = 13/687 (1%)
Query: 1 MARTREALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELT 60
MAR RE L+L+LDV P+M SVLPDVEK CS L+QKKLIY K EVG+++FGTEET NEL
Sbjct: 1 MARNREGLVLVLDVGPAMRSVLPDVEKACSMLLQKKLIYNKYDEVGIVVFGTEETGNELA 60
Query: 61 KEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGK 120
+E+GGYE+V VL++I+VVD + +K LP+GT AGDFLDA++VG+DMLIK YG +KGK
Sbjct: 61 REIGGYENVTVLRNIRVVDELAAEHVKQLPRGTVAGDFLDALIVGMDMLIKMYGNAHKGK 120
Query: 121 KHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIEN 180
K +CLIT+A CP KDP GTK+DQVSTIA +M A G++M++IV+R++LSG+ H RVI EN
Sbjct: 121 KRMCLITNAACPTKDPFEGTKDDQVSTIAMKMAAEGIKMESIVMRSNLSGDAHERVIEEN 180
Query: 181 DNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTG 240
D+LL +FS + AKT+ VDS SL G+ KTR ++PVT+FRGDLE++ MKIKVWVYKK
Sbjct: 181 DHLLTLFSSNAIAKTVNVDSPLSLLGSLKTRRVAPVTLFRGDLEINPTMKIKVWVYKKVA 240
Query: 241 EEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPIS 300
EE+ PTLK YSDKAP TDKFA HEVKVDY+YK + ++V+ PE+RIKG+RYGPQV+PIS
Sbjct: 241 EERLPTLKMYSDKAPPTDKFAKHEVKVDYDYKVTAESTEVIAPEERIKGFRYGPQVIPIS 300
Query: 301 SAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKE 360
+ E +KFK +K +KLLGFT+ASNILRHYYMKDVN+ + +P ++ +AVSA+AR MKE
Sbjct: 301 PDQIETLKFKTDKGMKLLGFTEASNILRHYYMKDVNIVVPDPSKEKSVLAVSAIAREMKE 360
Query: 361 MNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFP 420
NKVAIVRCVWR GQ +VVVGVLTPNVSE+ + PDSFYFNVLPFAEDVREF FPSF+K P
Sbjct: 361 TNKVAIVRCVWRNGQGNVVVGVLTPNVSERDDTPDSFYFNVLPFAEDVREFPFPSFNKLP 420
Query: 421 VSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPP 480
SW+P+EQQQ ADNLVKMLDLAPS + E+L+P+LTPNP L+RFY +LELKS+ DA P
Sbjct: 421 SSWKPDEQQQAVADNLVKMLDLAPSAEEEVLKPDLTPNPVLQRFYEYLELKSKSTDATLP 480
Query: 481 PLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGD 540
P+D + K++ E DP L + ++S +D F G F +KENPKLKK+++R LR+KPSGSD+ +
Sbjct: 481 PMDGTFKRLMEQDPELSSNNKSIMDTFRGSFEVKENPKLKKASKRLLRDKPSGSDDEDNR 540
Query: 541 GSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLL 600
DA+ E+K +D +GD PIQDFEAM+SRRD DW +KAI MKN I L+
Sbjct: 541 MITYDAK-----ENK----IDIVGDANPIQDFEAMISRRDKTDWTEKAITQMKNLIMKLV 591
Query: 601 EN-SNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFFDFLMSKK 659
EN ++EG KA+E ++ALRKGC+LEQEPKQFN+ L + K+C++RN S + MSKK
Sbjct: 592 ENCTDEG---DKALECVLALRKGCVLEQEPKQFNEFLNHLFKLCQERNLSHLLEHFMSKK 648
Query: 660 LSLISKSEAVDSDITDDEAGSFIVKSQ 686
++LI KSEA DSDI D+ AG FIVK +
Sbjct: 649 ITLIPKSEAADSDIVDENAGDFIVKQE 675
>sp|Q75IP6|KU80_ORYSJ ATP-dependent DNA helicase 2 subunit KU80 OS=Oryza sativa subsp.
japonica GN=KU80 PE=1 SV=1
Length = 688
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/692 (59%), Positives = 508/692 (73%), Gaps = 6/692 (0%)
Query: 1 MARTREALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELT 60
MAR +EAL+LLLDV PSMH VL +VE +CS L+ KKL+Y ++ E+GV+LFGT+ET NEL
Sbjct: 1 MARNKEALVLLLDVGPSMHGVLQEVENICSTLVHKKLVYNRSDEIGVVLFGTKETSNELA 60
Query: 61 KEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGK 120
KE+GGY+HV V +DIKVVD +L++LP+GT GDFLDAIVVG+DMLI+K+G KGK
Sbjct: 61 KELGGYKHVVVARDIKVVDEETTNALQNLPRGTSPGDFLDAIVVGLDMLIRKFG-NIKGK 119
Query: 121 KHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIEN 180
+ +CL+TDA PL+DP GTK+DQV TIA QM ++M I+ R S G H V+ EN
Sbjct: 120 QRMCLVTDAQHPLRDPPQGTKKDQVDTIADQMKRHEIKMDCIIFRES--GVRHNAVMDEN 177
Query: 181 DNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTG 240
D LL F ++S K + VDS TSL GA +TR++ PVT+FRGDLE+S KIKVWVYKKT
Sbjct: 178 DQLLYHFRERSVTKVVHVDSPTSLLGALRTRNVLPVTVFRGDLEVSSSFKIKVWVYKKTS 237
Query: 241 EEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPIS 300
EEKFPTLKKYSDKAP++DKFA+HEVKVDYEYKSV +P VVPP+QRIKGY YGPQVVPIS
Sbjct: 238 EEKFPTLKKYSDKAPASDKFASHEVKVDYEYKSVLEPDTVVPPDQRIKGYLYGPQVVPIS 297
Query: 301 SAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKE 360
SAEWEAVKFKPEK VKLLGFTD S+I RHY+MKDV F+ EPGN++A AVSALARAM E
Sbjct: 298 SAEWEAVKFKPEKGVKLLGFTDRSSISRHYFMKDVFSFVPEPGNTKAVAAVSALARAMSE 357
Query: 361 MNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFP 420
MNKVAI+RCVWRQGQ +V +GVLTPN+S N+ DSFYFN+LPFAED+REFQF SFS P
Sbjct: 358 MNKVAILRCVWRQGQGNVALGVLTPNISSAKNVLDSFYFNILPFAEDIREFQFRSFSSLP 417
Query: 421 VSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPP 480
S QP ++QQEAADNLVKMLDLAP G+ EIL+P+ TPNP LERFY +L+LKS+ DA P
Sbjct: 418 SSSQPTKEQQEAADNLVKMLDLAPPGREEILKPDFTPNPMLERFYRYLDLKSKQPDANVP 477
Query: 481 PLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGD 540
PLD LKKITEPDP ++ I F +KENPK KK R R +G+D+
Sbjct: 478 PLDKCLKKITEPDPDVIDYQAPLIKKLGNVFELKENPK-KKKARTQDRLTYTGADDQAKL 536
Query: 541 GSVSDAQAVNSMES--KPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFG 598
A+ V E+ P +IGD P+QDFEAM+++R WV AIE+M+ I
Sbjct: 537 LEEPSAEKVGVSEALYPPKKKAGEIGDHNPVQDFEAMLTQRSSSTWVQTAIEEMQKYITA 596
Query: 599 LLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFFDFLMSK 658
L+++S + N+ KA+E LVALRK CI+EQEP ++N + K+C+ R F L SK
Sbjct: 597 LIQDSCDRDNHQKALECLVALRKACIIEQEPNEYNGFVTKLCQKFRPAGDKIFLQLLSSK 656
Query: 659 KLSLISKSEAVDSDITDDEAGSFIVKSQPKHE 690
K SLISK EA DSD+T++ A +F +K +P +
Sbjct: 657 KASLISKEEAPDSDVTEEMARNFCLKPEPSSQ 688
>sp|Q54LY5|XRCC5_DICDI X-ray repair cross-complementing protein 5 OS=Dictyostelium
discoideum GN=ku80 PE=3 SV=1
Length = 796
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 210/772 (27%), Positives = 374/772 (48%), Gaps = 101/772 (13%)
Query: 5 REALLLLLDVSPSMHS-----------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTE 53
+EA++++LD+ M S + D + + L Q+KLIYGK ++G++L GT+
Sbjct: 8 KEAVVVILDIGLGMTSKDSDGTTTTTSSIEDALRSVTLLYQQKLIYGKKDQLGLVLIGTK 67
Query: 54 ETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKY 113
T+N L + GY+H+ V+ DI+ ++ L++L G GD +D+++V +DMLI+K
Sbjct: 68 GTKNNLQDD--GYQHITVVSDIEEPSIETLKYLENLAPGESKGDVIDSLIVAMDMLIRK- 124
Query: 114 GETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASL---SG 170
E K +K + L+T+A P+ D+ DQ I ++ G+ + ++ +
Sbjct: 125 TENKKYQKRIFLVTNARDPINTEDLSIVRDQFKKIDVKLNIIGVDFLEEIEENNMDTSNN 184
Query: 171 EPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMK 230
+ + +N+ L F++ + V + +++ + T FRG LE++ ++K
Sbjct: 185 NKNKSLKEKNEIFLREFAESVDGVLVPVKQALEMMSFFRSQSVMTRTSFRGALEITPELK 244
Query: 231 IKVWVYKKTGEEKFPTLKKYSDKAPSTDKFA--------------------------THE 264
I VW Y K ++ P+LKK S A + T +
Sbjct: 245 IPVWGYLKMKQQLLPSLKKISSIAQQQIEQQQQQQQQQNKNKNNEDNEDNEEGKPNITLD 304
Query: 265 VKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDAS 324
V + Y S+ DP + +KGY+YG ++P S + + +K+ K +K++GFTD
Sbjct: 305 VNQEVSYYSITDPDNEILKPDLLKGYKYGKSLIPFSKIDEDQLKYSSSKCLKVVGFTDRK 364
Query: 325 NILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLT 384
+I +Y M + +F+++PG+ ++ A+S+ A+ E ++V +VR V + S +G +
Sbjct: 365 SIPIYYNMGNTEVFVSQPGDKQSEEALSSFIHALVETDQVMVVRYV-KTMNGSPYLGYMI 423
Query: 385 PNV-SEKINIPDSFYFNVLPFAEDVREFQFPSFS-KFPVSWQ---PNEQQQEAADNLVKM 439
P+V S+ + Y+N LP A+D+R++QFP S K P++ + PN +Q EA L+
Sbjct: 424 PHVKSDYV----CLYYNHLPLADDIRQYQFPPISPKNPLTRKSNIPNAEQLEATQQLIDS 479
Query: 440 LDLAPSGKGE------ILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPD 493
+DL S E +L+P T NP L+ FY L +S H + P LD + + PD
Sbjct: 480 MDLMKSEFDEDGDPIQMLKPRFTYNPLLQHFYQCLHHRSLHPNTQIPKLDPIIAEYINPD 539
Query: 494 PTLLAESQSAIDAFCGQF------VIKENPKLKKSTRR---------------------- 525
++ +S+ +I F +F V + P +
Sbjct: 540 QIIMNKSKQSIKNFADKFPLTKTTVFSKTPAISGGNTNGTTSNTNNTMIGGVKYHWKDGM 599
Query: 526 FLREKPSGSDEPNGDGSVSDAQAVN-----SMESKPVVTVDKIGDLTPIQDFEAMMSRRD 580
+ E+ + DGS + + VN S++ V ++G + P+Q+F+ M++RRD
Sbjct: 600 LIGEEINLDSYVTDDGSEAKKRKVNDFSEFSLDKLVSGYVTEVGTINPVQNFKDMLNRRD 659
Query: 581 CPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVC 640
D VDKAI MK +I L+ +S Y KA E + LR GCI E E +QFN L+ +
Sbjct: 660 M-DLVDKAITLMKERILQLVNDSLRDQYYQKAFECIKELRVGCIRESEAEQFNGFLKDMR 718
Query: 641 KICRKRNFSTFFDFLMS--------KKLSLISKSEAVDSDITDDEAGSFIVK 684
+ + + F+ ++ + K ++LI++ E S++T +E F+ K
Sbjct: 719 SLFQSKKRDDFWQYITADVTSILGEKSINLITQDECDSSEVTQEELDQFLDK 770
>sp|P27641|XRCC5_MOUSE X-ray repair cross-complementing protein 5 OS=Mus musculus GN=Xrcc5
PE=2 SV=4
Length = 732
Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 171/733 (23%), Positives = 330/733 (45%), Gaps = 68/733 (9%)
Query: 4 TREALLLLLDVSPSMHSVLPDVE-------KLCSRLIQKKLIYGKNHEVGVILFGTEETE 56
+ A++L +DV +M + P E K+ + +Q+++ E+ ++L+GT+ T+
Sbjct: 6 NKAAVVLCVDVGVAMGNSFPGEESPIEQAKKVMTMFVQRQVFSESKDEIALVLYGTDGTD 65
Query: 57 NELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDFLDAIVVGVDMLIKKYGE 115
N L + Y+++ V + + + D L++ + + Q + DFLDA++V +D++ ++
Sbjct: 66 NALAGK-DQYQNITVCRHLMLPDFDLLEDIGNKIQPSSQQADFLDALIVCMDLIQRETIG 124
Query: 116 TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIV-VRASLSGEPHM 174
GKKH+ + TD P +DQ+ I + G+ ++ + +GEP
Sbjct: 125 KKFGKKHIEVFTDLSSPF-------SQDQLDVIICNLKKSGISLQFFLPFPIDKNGEPGE 177
Query: 175 RVIIEN--DNLLNIFSKKSSAKT------LFVDSTTSLRGARKTRDI-------SPVTIF 219
R +++ D+L F +K + + SL G +I + +F
Sbjct: 178 RGDLDSGLDHLKPSFPQKGLTEQQKEGIRMVTRVMLSLEGEDGLDEIYSFSESLRQLCVF 237
Query: 220 R----------GDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDY 269
+ L + + IK+ YK +EKF K S +++ +
Sbjct: 238 KKIERRSMPWPCQLTIGPNLSIKIVAYKSIVQEKF----KKSWVVVDARTLKKEDIQKET 293
Query: 270 EYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILR 328
Y +D V E I+GYRYG ++P S + E +K+K E K +LGF +S + R
Sbjct: 294 VYCLNDDDETEVSKEDTIQGYRYGSDIIPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVHR 353
Query: 329 HYYM-KDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNV 387
++M V A + A VA+S+L A+ E+N VAIVR + + + + VGV P +
Sbjct: 354 RFFMGHQVLKVFAAKDDEAAAVALSSLVHALDELNMVAIVRYAYDK-RSNPQVGVAFPYI 412
Query: 388 SEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGK 447
+ + + LPF ED+R++ F S K P E Q A D+L+ + L +
Sbjct: 413 KDAY---ECLVYVQLPFMEDLRQYMFSSL-KNNKKCTPTEAQLSAIDDLIDSMSLVKKNE 468
Query: 448 GEILQPEL-----TPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQS 502
E + +L PNP +R Y L ++ H PP+ + + +P + A+ +S
Sbjct: 469 EEDIVEDLFPTSKIPNPEFQRLYQCLLHRALHLQERLPPIQQHILNMLDPPTEMKAKCES 528
Query: 503 AIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAVN-SMESKPVVTVD 561
+ F + E K K + + + P ++ + + S+ S +
Sbjct: 529 PLSKVKTLFPLTEVIKKKNQVTAQDVFQDNHEEGPAAKKYKTEKEEDHISISSLAEGNIT 588
Query: 562 KIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLE---NSNEGINYPKAVELLVA 618
K+G + P+++F ++ ++ + E+ ++ +E ++NE + + K+++ + A
Sbjct: 589 KVGSVNPVENFRFLVRQKIA------SFEEASLQLISHIEQFLDTNETLYFMKSMDCIKA 642
Query: 619 LRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFFDFLMSKKLSLISKSEAVDSDITDDEA 678
R+ I E ++FN LE + + + + F++ ++ ++LI+K E S IT +EA
Sbjct: 643 FREEAIQFSEEQRFNSFLEALREKVEIKQLNHFWEIVVQDGVTLITKDEGPGSSITAEEA 702
Query: 679 GSFIVKSQPKHED 691
F+ ED
Sbjct: 703 TKFLAPKDKAKED 715
>sp|P13010|XRCC5_HUMAN X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5
PE=1 SV=3
Length = 732
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 166/734 (22%), Positives = 329/734 (44%), Gaps = 81/734 (11%)
Query: 1 MART--REALLLLLDVSPSMHSVLPDVE-------KLCSRLIQKKLIYGKNHEVGVILFG 51
M R+ + A++L +DV +M + +P +E K+ + +Q+++ E+ ++LFG
Sbjct: 1 MVRSGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFG 60
Query: 52 TEETENELTKEVGG--YEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDFLDAIVVGVDM 108
T+ T+N L+ GG Y+++ V + + + D L++ ++ Q G+ DFLDA++V +D+
Sbjct: 61 TDGTDNPLS---GGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDV 117
Query: 109 LI---------KKYGETYK------GKKHLCLITDAL--CPL-----------KDPDVGT 140
+ K++ E + K L +I +L C + K+ G
Sbjct: 118 IQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGD 177
Query: 141 KEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIEN-DNLLNIFSKKSSAKTLFVD 199
+ D + +F L+ + L + + +E D L I+S S + L V
Sbjct: 178 RGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLRKLCV- 236
Query: 200 STTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDK 259
+ + P L + + I++ YK +E+ D
Sbjct: 237 ----FKKIERHSIHWPCR-----LTIGSNLSIRIAAYKSILQERVKKTWTVVD----AKT 283
Query: 260 FATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLL 318
+++ + Y +D V E I+G+RYG +VP S + E +K+K E K +L
Sbjct: 284 LKKEDIQKETVYCLNDDDETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVL 343
Query: 319 GFTDASNILRHYYMKDVNL-FIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQS 377
GF +S + R ++M + L A + A VA+S+L A+ +++ VAIVR + + + +
Sbjct: 344 GFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALDDLDMVAIVRYAYDK-RAN 402
Query: 378 VVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLV 437
VGV P++ + + LPF ED+R++ F S K + P E Q A D L+
Sbjct: 403 PQVGVAFPHIKHNY---ECLVYVQLPFMEDLRQYMFSSL-KNSKKYAPTEAQLNAVDALI 458
Query: 438 KMLDLAPSGKG-----EILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEP 492
+ LA + ++ PNP +R + L ++ H PP+ + + P
Sbjct: 459 DSMSLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNP 518
Query: 493 DPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAVN-S 551
+ +SQ + F + E K + T + + + + D P ++ + S
Sbjct: 519 PAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQD-NHEDGPTAKKLKTEQGGAHFS 577
Query: 552 MESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLE---NSNEGIN 608
+ S +V +G + P ++F ++ ++ + E+ N++ +E ++NE
Sbjct: 578 VSSLAEGSVTSVGSVNPAENFRVLVKQKKA------SFEEASNQLINHIEQFLDTNETPY 631
Query: 609 YPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFFDFLMSKKLSLISKSEA 668
+ K+++ + A R+ I E ++FN+ L+ + + + + F++ ++ ++LI+K EA
Sbjct: 632 FMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGITLITKEEA 691
Query: 669 VDSDITDDEAGSFI 682
S +T +EA F+
Sbjct: 692 SGSSVTAEEAKKFL 705
>sp|Q7RX73|KU80_NEUCR ATP-dependent DNA helicase II subunit 2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=ku80 PE=3 SV=2
Length = 725
Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 161/668 (24%), Positives = 297/668 (44%), Gaps = 67/668 (10%)
Query: 65 GYEHVKVLQDIKVVDGHLVQSLKHL--PQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKH 122
GYE++ VLQ++ + +++LK P T + D + AIVV + M I+ + + K K+
Sbjct: 74 GYENISVLQELGPMTMASLRALKSKIEPSSTSSADAISAIVVALRM-IQTFTKKLKYKRK 132
Query: 123 LCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDN 182
+ ++T+ P+ D + ++ + +++ G+ + E R +N+
Sbjct: 133 IIVVTNGESPIDDDQSEEVANMLNDVGIELIVLGVDFDD--AEYGFKEEDKPRHKEQNEK 190
Query: 183 LLNIFSK--KSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMK------IKVW 234
+L +S A + L R + + P + G L L + K I+V
Sbjct: 191 ILKTLVDHCESGAFGTMAQAVEELATPR-IKSVRPFKAYDGPLTLGDPQKYPSALSIQVE 249
Query: 235 VYKKTGEEKFPTLKKYSD--KAPSTDKF-----------ATHEVKVDYEYKSVEDPS--- 278
Y KT P+ ++ P T + VK Y+ +ED
Sbjct: 250 RYFKTKRATPPSASNVANPNGPPQTQVWNEDDGVPFSGVGLQPVKQLRTYR-IEDSKAAG 308
Query: 279 --KVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVN 336
K V E K Y+YG VVP +E + +K++ KS ++GF S+ M +
Sbjct: 309 GKKDVDMEDLAKAYQYGRTVVPFGKSEEDYLKYETTKSFTIIGFVPMSSYEPFLNMGETG 368
Query: 337 LFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDS 396
L +A+ N A + +SAL A+ E+ A+ R V + ++ +L PN + + +I +
Sbjct: 369 LIVAQKVNEEAELGLSALIHALHELESYAVARYVNKDKAPPQIL-LLKPNPAIEDDI-EC 426
Query: 397 FYFNVLPFAEDVREFQFPSFSKFPV---------SWQPNEQQQEAADNLVKMLDLAPSGK 447
Y LPFAEDVR +QFP K PN Q+A + V +DL G+
Sbjct: 427 LYDIPLPFAEDVRSYQFPPLDKVLTITGNVLTEHRLLPNNDLQQAMSDYVDAMDLTEYGQ 486
Query: 448 GEILQP-ELTP-----NPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQ 501
+ P E P NP + + ++ + DA PP+ + L + T P LLA+++
Sbjct: 487 DDDGHPAEYAPIDDLYNPVIHHMNQAIRNRAVNPDAPLPPVAEILTRFTHPPEPLLAKAK 546
Query: 502 SAIDAFCGQFVIKE-NPKLKKSTRRFLREKP-SGSDEPNGDGSVSDAQAVNSMESKPVVT 559
+ ID +K+ PK++ R KP SG D D +S+ + + P+++
Sbjct: 547 TEIDGLIQAAEVKKVPPKVQGKRGRKDTVKPLSGLDI---DALLSETRP--RTKKTPIIS 601
Query: 560 VDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVAL 619
+ I +F+ ++ + + ++ A + M N I L+ +S + YP+A E L +
Sbjct: 602 TENA-----IPEFKQILETAEDDETIEIAAKQMGNIICKLVSDSFADVLYPRAAENLRVM 656
Query: 620 RKGCILEQEPKQFNDVLEKVCKICRKRNFS-----TFFDFLMSKKLSLISKSEAVDSDIT 674
R+ I + P +N + K+ + N + +F +++ +L LI++ E+ S+++
Sbjct: 657 REELINMEVPTLYNKYITKLKESLLSGNLNGDRREMWFRWIVGGRLGLITQDESEVSEVS 716
Query: 675 DDEAGSFI 682
++EA +F+
Sbjct: 717 ENEAKAFL 724
>sp|Q2H6C5|KU80_CHAGB ATP-dependent DNA helicase II subunit 2 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=KU80 PE=3 SV=1
Length = 736
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 167/709 (23%), Positives = 300/709 (42%), Gaps = 94/709 (13%)
Query: 41 KNHEVGVILFGTEETENELTKE-VGGYEHVKVLQDIKVVDGHLVQSLKHLPQG--TCAGD 97
K +GV+ TEET N E + GYEH+ VLQDI + ++ L+ Q T GD
Sbjct: 49 KTWTLGVVGLNTEETNNAQDSEGLEGYEHISVLQDIGPMTMTQLRELRSSIQTSHTYGGD 108
Query: 98 FLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGL 157
+ IVV + M I+ + + K + + L+T+ P+ D ++++ +++ G+
Sbjct: 109 AISGIVVALAM-IELFTKKLKYNRRIILVTNGESPIDDESSEDVANRLNYSNIELIVIGV 167
Query: 158 RMKNIVV--------RASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARK 209
+ + E +R ++E N + + + + L + +
Sbjct: 168 DFDDADYGFKEEDKSKGKARNEKTLRKLVEQCNNGVFGTMQQAVEELAIP---------R 218
Query: 210 TRDISPVTIFRGDLELSE------KMKIKVWVYKKTGEEKFP-----TLKKYSDKAPSTD 258
+ + P + G L L + + I V Y KT P + A ++
Sbjct: 219 IKPVRPFKAYDGALTLGDPEKYKSALSIHVERYFKTKRAPAPPASTVVVNSEPGGASQSE 278
Query: 259 KFATHEVKVDYEYKSVE--------DPS-----KVVPPEQRIKGYRYGPQVVPISSAEWE 305
D E+ V+ DP + V E KGY+YG VVP S +++
Sbjct: 279 TLNEDTEMGDAEFSGVKHMRTYRVNDPDAPGGKRDVEFEDLAKGYQYGRTVVPFSESDFS 338
Query: 306 AVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVA 365
K + +KS +LGF S+ + + + +A+ N A + +SAL A+ E+ A
Sbjct: 339 ITKLETKKSFTILGFIPFSSYNPFLNLGETGIVVAQKHNEEAELGLSALIHALHELESYA 398
Query: 366 IVRCVWRQGQQSVVVGVLTPNVSEKINIPDSF---YFNVLPFAEDVREFQFPSFSK-FPV 421
+ R V + G Q +V +L PN + I D F Y LPFAED+R +QFP K V
Sbjct: 399 VARYVQKDGAQPQLV-LLKPNPA----IEDDFECLYDVPLPFAEDLRSYQFPPLDKVLTV 453
Query: 422 SWQ--------PNEQQQEAADNLVKMLDLAPSGKGEILQP-ELTP-----NPALERFYHH 467
+ P+E ++A + V +DL+ E +P E P NP + R
Sbjct: 454 TGNIIKEHRLLPSEDLKQAMSDFVDAMDLSGFDVDEDGKPTEYAPIDETYNPTIHRMNQA 513
Query: 468 LELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFL 527
+ ++ DA P + L + ++P L+ +++ I+A IK+ P K+ R
Sbjct: 514 IRARAVDPDAPIKPPAEILLRFSKPPEKLIEKAKPEIEALIDAAEIKKVP--AKAQGRGS 571
Query: 528 REKP----SGSDEPNGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPD 583
R++P SG D ++S+ + T + + P +F+ +++
Sbjct: 572 RKEPVKPLSGLD-------------IDSLLGESKRTTISLDNAVP--EFKQILATAADDA 616
Query: 584 WVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKIC 643
++ A + M + L+++S + Y +A E L +R+ I + P +N L + K
Sbjct: 617 TIESAAKQMGQIVRKLIQDSFADLFYARAAENLRVMREELISLEVPGLYNKFLTGLKKSI 676
Query: 644 RKRNF-----STFFDFLMSKKLSLISKSEAVDSDITDDEAGSFIVKSQP 687
+F ++ LSLI++ E+ S++T +EA + S+P
Sbjct: 677 LSGELDGDRREMWFKHIVGGHLSLITQDESEVSEVTAEEAKALCAWSRP 725
>sp|Q2MHH1|KU80_ASPSO ATP-dependent DNA helicase II subunit 2 OS=Aspergillus sojae
GN=ku80 PE=3 SV=1
Length = 725
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 175/750 (23%), Positives = 316/750 (42%), Gaps = 114/750 (15%)
Query: 5 REALLLLLDVSPSMHSV-----LPDVE----KLCSRLIQKKLIYGKNHEVGVILFGTEET 55
+EA + ++DV SM + D+E + R+ K +GVI T+ET
Sbjct: 4 KEATVYIVDVGRSMGECRNGRSVTDLEWAMQYVWDRITGTVATGRKTATMGVIGLRTDET 63
Query: 56 ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL-----PQGTCAGDFLDAIVVGVDMLI 110
NEL +V + H+ VL +IK L+ ++ L P T GD + AI++ + M+I
Sbjct: 64 SNELEDDVH-FSHIAVLSNIK---QFLMPDIRKLEDELKPSKTDKGDAISAIILAIQMII 119
Query: 111 KKYGETYKGKKHLCLITDALCPLKDPDVG-----TKEDQVSTIARQM----VAFGLRMKN 161
+ + K ++ + L+T+ + D D+G KED + + + +G + ++
Sbjct: 120 T-HCKKLKYRRKIALVTNGQGRMSDEDLGEIVKKVKEDNIELVVMGIDFDDPEYGYKEED 178
Query: 162 IVVRASLSGEPHMRVIIEN-DNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFR 220
R + E +R ++E+ D + F + + L + S+R V F+
Sbjct: 179 KDPRKA-ENETLLRTLVEDCDGVYGTFEQ--AVAELDIPRVKSVRS---------VASFK 226
Query: 221 GDLELSE------KMKIKVWVYKKTGEEKFPTLKKY---------------------SDK 253
G L+L ++I V Y +T K PT + + K
Sbjct: 227 GYLQLGNPEDYDSALRIPVERYYRTYPAKPPTASSFVLRSEPEAGQEEAESSEAAAATQK 286
Query: 254 APSTDKFATHEVKVDYEYKSVEDPS----KV-VPPEQRIKGYRYGPQVVPISSAEWEAVK 308
+ V+ Y+ VED S K+ + + KGY YG V IS +
Sbjct: 287 GSQSGDIGLTTVRTMRTYQ-VEDKSAPGGKIDIERDDLAKGYEYGRTAVHISETDENITI 345
Query: 309 FKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVR 368
++L+GF R+ +M + N+ IA+ N +A +A+S+ A+ E+ A+ R
Sbjct: 346 LDTFAGLELMGFIQTDRYQRYMHMSNTNIIIAQRANDKAALALSSFIHALFELECYAVAR 405
Query: 369 CVWRQGQQSVVVGVLTPNVSEKINIPD--SFYFNVLPFAEDVREFQFPSFSK-FPVSWQ- 424
V ++ + V+V +L P++ PD LPFAEDVR ++FP K VS +
Sbjct: 406 LVVKENKPPVIV-LLAPSIE-----PDYECLLEVQLPFAEDVRTYRFPPLDKVITVSGKV 459
Query: 425 -------PNEQQQEAADNLVKMLDLAPSGKG----EILQPELTPNPALERFYHHLELKSE 473
PN+ + V ++L + + E + + +P L R + ++
Sbjct: 460 VTQHRNLPNDDLLDVMGKYVNSMELVDADEDGDPVETFPIDDSYSPVLHRIDAAIRARAI 519
Query: 474 HQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE-NPKLKKSTRRFLREKPS 532
H D PP + L K + P L+ SQ ++ +K+ PK K R EKP
Sbjct: 520 HPDQPIPPPSERLTKFSHPREDLIERSQKYLEKLIEIADVKKVPPKAKGRKRTRETEKPL 579
Query: 533 GSDEPNGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDM 592
S D A+ E + KI I +F+ +++ + + + A + M
Sbjct: 580 ---------SGLDVDALLHHEKRA-----KISPNNAIPEFKQTLAQAENIEAIKDATKQM 625
Query: 593 KNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVC-KICRKR---NF 648
+ +++S NY + +E L +R + +EP +ND L ++ K+ +++ +
Sbjct: 626 MVIVEDQIKHSLGNANYDRVIEALGTMRDELVSYEEPASYNDFLGQLKDKLLQEKLGGDR 685
Query: 649 STFFDFLMSKKLSLISKSEAVDSDITDDEA 678
+ + KL L+++ E+ S +TD EA
Sbjct: 686 QELWWLVRRNKLGLVTQRESDQSRVTDTEA 715
>sp|Q4WI96|KU80_ASPFU ATP-dependent DNA helicase II subunit 2 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=ku80 PE=3 SV=1
Length = 725
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 155/686 (22%), Positives = 295/686 (43%), Gaps = 72/686 (10%)
Query: 41 KNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL--PQGTCAGDF 98
K +GVI T+ET NEL + ++H+ V +I+ ++ L L P T GD
Sbjct: 49 KTATIGVIGLKTDETSNELDDD-PHFKHISVFTEIQQFLMPDIRRLGALVKPSETDKGDA 107
Query: 99 LDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 158
+ AI++ + M++ Y + K K+ + L+T+ + + D+ ++ +V G
Sbjct: 108 ISAIILAIQMIV-TYCKKLKYKRKIVLVTNGQGWMSNEDLDQITKKIKEDNIDLVVLGTD 166
Query: 159 MKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTI 218
+ G+ + EN+ LL + + ++ S + + + V
Sbjct: 167 FDDPEYGFKEEGKDPRKA--ENEALLRGLVEDCNGAFGTLEQAVSEMDIPRAKRVRTVAT 224
Query: 219 FRGDLELSE------KMKIKVWVYKKTGEEKFPTLKKY---SDKAPSTDKFATHEVKVD- 268
F+G L+L ++I V Y +T K P+ + SD ++ + ++
Sbjct: 225 FKGFLQLGNPEEYDTALRIPVERYYRTYVAKPPSASSFVLRSDVGAEGEQGESSQLPKSP 284
Query: 269 ---------YEYKSVEDPSKVVPP-------EQRIKGYRYGPQVVPISSAEWEAVKFKPE 312
++ E P + P E+ KGY YG V IS + +
Sbjct: 285 PEGGALTSVRNLRTYEVPDENAPGGKFDVEREELAKGYEYGRTAVHISETDENITTLETY 344
Query: 313 KSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWR 372
+++L+GF R+ +M N+ I + GN +A++A+S+ A+ E+ A+ R V +
Sbjct: 345 AALELVGFIQTDKYDRYMHMSTTNIIIGQRGNDKASLALSSFIHALFELECYAVARLVVK 404
Query: 373 QGQQSVVVGVLTPNVSEKINIPD--SFYFNVLPFAEDVREFQFPSFSK-FPVSWQ----- 424
+ + V+V +L P++ PD LPFAEDVR ++FP K VS +
Sbjct: 405 ENKPPVMV-LLAPSIE-----PDYECLLEVQLPFAEDVRTYRFPPLDKVITVSGKVVTEH 458
Query: 425 ---PNEQQQEAADNLVKMLDLAPSGKG----EILQPELTPNPALERFYHHLELKSEHQDA 477
PN+ +A V ++L + + E L + + +P L R + ++ H D
Sbjct: 459 RNLPNKDLLDAMSEYVDSMELVDTDETGNPVEGLPIDDSFSPVLHRIDSAIRYRAIHPDD 518
Query: 478 APPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE-NPKLKKSTRRFLREKPSGSDE 536
P +L K+++P L+ +S++ + +K+ PK+K R EKP
Sbjct: 519 PVLPPSKNLTKLSQPPQDLVEKSKAYLQKLMEAADVKKVPPKVKGRKRIRESEKPL---- 574
Query: 537 PNGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKI 596
S D A+ E + +I I +F+ +++ + + + A++ M + I
Sbjct: 575 -----SGLDVDALLHQEKRA-----RISPTNAIPEFKQTLTQAETIETIKDAVKQMTSII 624
Query: 597 FGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFS----TFF 652
++NS NY + +E + +R+ I +EP +ND L ++ K +
Sbjct: 625 EDQIKNSLGDANYDRVIEEMGVMREELISFEEPALYNDFLRQLKDKLLKEELGGDRRELW 684
Query: 653 DFLMSKKLSLISKSEAVDSDITDDEA 678
L +L LI++ E+ SD+T+++A
Sbjct: 685 WLLRRSQLGLINQRESDQSDVTEEQA 710
>sp|Q2MHH2|KU80_ASPOR ATP-dependent DNA helicase II subunit 2 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=ku80 PE=3 SV=1
Length = 725
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 167/739 (22%), Positives = 310/739 (41%), Gaps = 92/739 (12%)
Query: 5 REALLLLLDVSPSMHSV-----LPDVE----KLCSRLIQKKLIYGKNHEVGVILFGTEET 55
+EA + ++DV SM + D+E + R+ K +GVI T+ET
Sbjct: 4 KEATVYIVDVGRSMGECRNGRSVTDLEWAMQYVWDRITGTVATGRKTAMMGVIGLRTDET 63
Query: 56 ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL-----PQGTCAGDFLDAIVVGVDMLI 110
NEL +V + H+ VL ++K L+ ++ L P T GD + AI++ + M+I
Sbjct: 64 SNELEDDVH-FSHIAVLSNLK---QFLMPDIRKLEDELKPSKTDKGDAISAIILAIQMII 119
Query: 111 KKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVV-RASLS 169
+ + K ++ + L+T+ + D D+G +V ++V G+ +
Sbjct: 120 T-HCKKLKYRRKIVLVTNGQGRMSDEDLGEIVKKVKEDNIELVVMGIDFDDPEYGYKEED 178
Query: 170 GEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSE-- 227
+PH EN+ LL + + + + + + V F+G L+L
Sbjct: 179 KDPHK---AENETLLRTLVEDCDGVYGTFEQAVAELDIPRVKSVRSVASFKGYLQLGNPE 235
Query: 228 ----KMKIKVWVYKKTGEEKFPTLKKY---------------------SDKAPSTDKFAT 262
++I V Y +T K PT + + K +
Sbjct: 236 EYDSALRIPVERYYRTYPAKPPTASSFVLRSEPEAGQEEAESSEAAAATQKGSQSGDAGL 295
Query: 263 HEVKVDYEYKSVEDPS----KV-VPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKL 317
V+ Y+ VED S K+ + ++ KGY YG V IS + ++L
Sbjct: 296 TTVRTMRTYQ-VEDKSAPGGKIDIERDELAKGYEYGRTAVHISETDENITILDTFAGLEL 354
Query: 318 LGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQS 377
+GF R+ +M + N+ IA+ N +A +A+S+ A+ E+ A+ R V ++ +
Sbjct: 355 MGFIQTDQYQRYMHMSNTNIIIAQRANDKAALALSSFIHALFELECYAVARLVVKENKPP 414
Query: 378 VVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSK-FPVSWQ--------PNEQ 428
V+V +L P++ + + LPFAEDVR ++FP K VS + P++
Sbjct: 415 VIV-LLAPSIEPEY---ECLLEVQLPFAEDVRTYRFPPLDKVITVSGKVVTQHRNLPSDD 470
Query: 429 QQEAADNLVKMLDLAPSGKG----EILQPELTPNPALERFYHHLELKSEHQDAAPPPLDD 484
+ V ++L + + E + + +P L R + ++ H D PP +
Sbjct: 471 LLDVMGKYVNSMELVDADEDGDPVETFPIDDSYSPVLHRIDAAIRARAIHPDQPIPPPSE 530
Query: 485 SLKKITEPDPTLLAESQSAIDAFCGQFVIKE-NPKLKKSTRRFLREKPSGSDEPNGDGSV 543
L K + P L+ +SQ ++ +K+ PK K R EKP S
Sbjct: 531 RLTKFSHPREDLIEKSQKHLEKLIEIADVKKVPPKAKGRKRTRETEKPL---------SG 581
Query: 544 SDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENS 603
D A+ E + KI I +F+ +++ + + + A + M + +++S
Sbjct: 582 LDVDALLHHEKRV-----KISPNNAIPEFKQTLAQAENIEAIKDATKQMMVIVEDQIKHS 636
Query: 604 NEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVC-KICRKR---NFSTFFDFLMSKK 659
NY + +E L +R + +EP +ND L ++ K+ +++ + + + K
Sbjct: 637 LGNANYDRVIEALGTMRDELVSYEEPASYNDFLGQLKDKLLQEKLGGDRQELWWLVRRNK 696
Query: 660 LSLISKSEAVDSDITDDEA 678
L L+++ E+ S +TD EA
Sbjct: 697 LGLVTQRESDQSRVTDTEA 715
>sp|Q5B4H8|KU80_EMENI ATP-dependent DNA helicase II subunit 2 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=ku80 PE=3 SV=1
Length = 725
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 169/758 (22%), Positives = 320/758 (42%), Gaps = 118/758 (15%)
Query: 5 REALLLLLDVSPSMHSV-----LPDVE---KLCSRLIQKKLIYG-KNHEVGVILFGTEET 55
+EA + ++DV SM L D+E K I + G K +GVI T+ T
Sbjct: 4 KEATVYIVDVGKSMGERRNGRDLTDLEWAMKYVWDCITNTVATGRKTAMLGVIGLKTDGT 63
Query: 56 ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL-----PQGTCAGDFLDAIVVGVDMLI 110
+NEL E + H+ VL +IK L+ ++ L P GD + A+++ + M+I
Sbjct: 64 DNELGDE-SHFSHISVLSEIK---QFLMSDIRELGERIKPSSVDKGDAISALILAIQMII 119
Query: 111 KKYGETYKGKKHLCLITDALCPLKDPDVG-----TKEDQVSTIARQMVA----------F 155
+ + K K+ + LIT+ L + ++ KED + I + +
Sbjct: 120 T-HCKKLKWKRKIVLITNGLGRMNSENLDDIVSKVKEDNIELIILDLTGRRGPDFDDAEY 178
Query: 156 GLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISP 215
G++ ++ +PH N+ LL +++ ++ + + + P
Sbjct: 179 GIKEED--------KDPHK---ASNETLLRTITERCDGVFGTLEQAVEETEIPRVKPVRP 227
Query: 216 VTIFRGDLELSE------KMKIKVWVYKKTGEEKFPTLKKY---SDKAPSTD----KFAT 262
V F+G L+L ++I V Y +T K PT ++ SD A + A
Sbjct: 228 VASFKGFLQLGNPEEYDTAVRIPVERYPRTMVAKPPTASQFVLRSDLAAGQEGPVSSTAV 287
Query: 263 HEVKVD-------------YEYKSVEDPSKVVPPEQR--IKGYRYGPQVVPISSAEWEAV 307
E + + Y+ P + E+ KGY YG V IS +
Sbjct: 288 PETQPEDGSNLTNVRNLRTYQVSDESAPGGKIDVERDDLAKGYEYGRTAVHISETDENIT 347
Query: 308 KFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIV 367
+ + +++L+GF + R+ ++ + ++ IA N +A++A+S+ A+ E+ A+
Sbjct: 348 RLETTAAMELVGFIQSERYDRYMHLSNTHIIIANRANDKASLALSSFIHALFELESYAVA 407
Query: 368 RCVWRQGQQSVVVGVLTPNVSEKINIPD--SFYFNVLPFAEDVREFQFPSFSK-FPVSWQ 424
R V ++ + +V +L P++ PD LPFAEDVR ++FP VS +
Sbjct: 408 RLVTKENKPPTLV-LLAPSIE-----PDYECLLEVQLPFAEDVRTYRFPPLDHVVTVSGK 461
Query: 425 --------PNEQQQEAADNLVKMLDLAPSGK-GEILQPELTP-------NPALERFYHHL 468
PN+ +A D V ++L + + G+++ TP +P L R +
Sbjct: 462 VVTQHRNLPNDDLLDAMDKYVDSMELKGTDEDGDLVN---TPFPIDDSFSPVLHRVNAAI 518
Query: 469 ELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLR 528
++ H + PP L + ++P LL ++ + +K+ P K +R
Sbjct: 519 RSRAIHPNDPIPPPARILTQFSQPPEHLLKNAERHLKRLIEVADVKKVPPKAKGRKR--- 575
Query: 529 EKPSGSDEPNGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKA 588
+ EP S D ++ E + +I I +F+ +++ + + + A
Sbjct: 576 -----AREPEKPLSGLDVDSLLHQEKRV-----RISPNNAIPEFKQTLAQAENIETMKDA 625
Query: 589 IEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNF 648
++ M++ + + +S NY + E L +R+ I +EP +ND++ K+ + K
Sbjct: 626 VKQMRSILEDQIRHSLGDANYDRVTEGLGVVREELIAYEEPGLYNDLIRKLKEALLKEKL 685
Query: 649 S----TFFDFLMSKKLSLISKSEAVDSDITDDEAGSFI 682
+ L KL LI + E+ S++T++EA F+
Sbjct: 686 GGDQRELWWLLKRSKLGLIEQRESELSEVTEEEAKKFM 723
>sp|Q6C7B9|KU80_YARLI ATP-dependent DNA helicase II subunit 2 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=KU80 PE=3 SV=1
Length = 726
Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 136/525 (25%), Positives = 236/525 (44%), Gaps = 55/525 (10%)
Query: 33 IQKKLIYGKNHEV-GVILFGTEETENELTKEVGGYEHVKVLQDIKVVD-GHLVQSLKHL- 89
I K++ G+ +V G++ T+ T+N + +E G+EH+ ++ I+ + L+++ K L
Sbjct: 44 ISNKILSGRKTDVVGLVGVHTDTTQN-MFEEESGFEHIDIITPIQQFNLDTLLEAKKQLV 102
Query: 90 PQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIA 149
P GD + IVV V M IK Y + K +++ ++T+ + D G Q++
Sbjct: 103 PNSDNKGDLISGIVVAVQM-IKLYTKALKYIRNIVVLTNGQGNMNLGDSGGIIKQLNENR 161
Query: 150 RQMVAFGLRMKNIVVRASLSGEP-HMRVIIENDNLLNIFSKK--SSAKTLFVDSTTSLRG 206
+ G+ + V +P H R EN+ L F + S + ++ SL
Sbjct: 162 IILKVMGVDFDDEEVDYFEEDKPEHKR---ENELKLKEFVDRCEDSVFATYKEARDSL-D 217
Query: 207 ARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHE-- 264
K + ++PV F+G+L LS+ + G E FP ++ + S+ + E
Sbjct: 218 IPKVKAVNPVRAFQGNLVLSDPEQQPPQRVMSIGVEVFPCTRRATAMTASSYAMSKIEPA 277
Query: 265 ------------VKVDYEYKSVEDPSKVVPPEQRIK-----GYRYGPQVVPISSAEWEAV 307
VK D +Y V D S + ++ + GYRYG ++V I+ E EA+
Sbjct: 278 TISTPSQNNLQAVKWDRQY-YVNDESGIGGKKELDRDTLENGYRYGSEIVYITKEEEEAI 336
Query: 308 KFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIV 367
F S++++GF + ++ + M + I + GN+R VA+SA ARA+ E + +
Sbjct: 337 MFPTSASLQVIGFVNKKSVPPYMLMGHTDYIIGQRGNNRDAVAISAFARALFETDNFGLA 396
Query: 368 RCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPV------ 421
R V + G+ +V VL P + ++ + F LPFAED R+F PS +
Sbjct: 397 RYVNKDGKDPQIV-VLMPYIRAEL---EGLVFCQLPFAEDERKFILPSLTSLETRSGNKT 452
Query: 422 -----SWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLE------L 470
P ++ +A D+ V +DL+ KGE +P LT HH+
Sbjct: 453 VTTHSRLLPTKEMLDAMDDYVDAMDLSKL-KGEDDEPWLTMEECFNPSIHHIRNVVKECA 511
Query: 471 KSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 515
S+ P PL L + ++P L E++ ++ F IKE
Sbjct: 512 VSQDYGKIPEPL-PILTRFSQPAEELTEEAKPQLELLKHLFDIKE 555
>sp|Q1E6K9|KU80_COCIM ATP-dependent DNA helicase II subunit 2 OS=Coccidioides immitis
(strain RS) GN=KU80 PE=3 SV=1
Length = 731
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 156/698 (22%), Positives = 290/698 (41%), Gaps = 78/698 (11%)
Query: 41 KNHEVGVILFGTEETENELTK--EVGGYEHVKVLQDIKVVDGHLVQSLKHL--PQGTCAG 96
K VGV+ T+ + N L + E Y H+ V Q+I + ++ L+ L P T G
Sbjct: 49 KTATVGVVGLRTDGSSNPLWEKDEEESYAHLSVFQEIGQMLMPDIRKLRDLVKPSNTNQG 108
Query: 97 DFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFG 156
D + +I++ +DM+++ Y + K K+ + L+TD + + + ++ ++V G
Sbjct: 109 DAISSIILAIDMIVR-YCKRLKYKRKIVLVTDGRSTMDSDGIDSIVSKIKEEGIELVILG 167
Query: 157 LRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPV 216
+ + E +N+++L I + + + + + + +
Sbjct: 168 VDFDD--PDYGFKEEDKDPFKTKNESVLKILADDADGAYGTLAQAVEEMTTPRIKVVRGI 225
Query: 217 TIFRGDLEL------SEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYE 270
FRGDL L S + I+V Y +T + P ++ +T E V +
Sbjct: 226 PSFRGDLRLGDPSQYSTGLTIQVERYYRTYVARPPAASAFALSIAPPKGQSTAESSVTLQ 285
Query: 271 -----------------------YKSVEDPS----KVVPPEQRIKGYRYGPQVVPISSAE 303
Y+ +++ + K V + KGY YG V IS ++
Sbjct: 286 NGDSTVETANASNNLSGVRNARSYQVIDENAPGGKKEVERDDLAKGYEYGRTAVHISESD 345
Query: 304 WEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNK 363
K +++ +GF + N R+ M N+ IA+ N +A +A+S++ A+ E+
Sbjct: 346 EVITKLDTTAALEFIGFIQSENYERYMNMSTSNVIIAQKINDKAILALSSMIHALFELEY 405
Query: 364 VAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKF-PVS 422
AI R V + G+ ++V +L P + + LPFAED R ++FP K VS
Sbjct: 406 YAIGRLVTKDGKPPLMV-LLAPLIETDF---ECLLEVQLPFAEDTRSYRFPPLDKIVTVS 461
Query: 423 WQ--------PNEQQQEAADNLVKMLDLAPSGKG----EILQPELTPNPALERFYHHLEL 470
+ P++ E V+ +DL+ + + L E +P + R +
Sbjct: 462 GKVVKEHRNLPSDDLLETMGKYVEDMDLSEFDENGDPFQSLALEDCYSPLVHRIDQAIRW 521
Query: 471 KSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAI-DAFCGQFVIKENPKLKKSTRRFLRE 529
++ H PP+ L+K++ L+ +S ++ D V K PK K RR +
Sbjct: 522 RAVHPTKPLPPVPKVLEKLSHWPEELVKKSHDSLRDLISISAVKKVPPKAKGRKRRREAD 581
Query: 530 KP-SGSDEPNGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKA 588
KP SG N D + + + KI PI +F+ ++ + + A
Sbjct: 582 KPLSGL---NVDDLLRGEKRL------------KISPENPIPEFKQTLANTEDISAISDA 626
Query: 589 IEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVL----EKVCKICR 644
++ M I + S INY +A+E + +R+ I +EP +ND + EK+
Sbjct: 627 VKQMSAIIEDQIRQSLGDINYDRAIEGIGTMREELIAYEEPGLYNDFIRGLKEKLLDDKL 686
Query: 645 KRNFSTFFDFLMSKKLSLISKSEAVDSDITDDEAGSFI 682
+ + + +L LI + SDIT+++A F+
Sbjct: 687 GGDRREMWWLIRKSRLGLIDQKALDISDITEEQAREFL 724
>sp|Q0U8L4|KU80_PHANO ATP-dependent DNA helicase II subunit 2 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=KU80 PE=3
SV=1
Length = 715
Score = 106 bits (264), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 172/728 (23%), Positives = 300/728 (41%), Gaps = 131/728 (17%)
Query: 41 KNHEVGVILFGTEETE-NELTKEVGGYEHVKVLQDIKVVDGHLVQSLKH--LPQGTCAGD 97
K+ + VI T+ET+ + +E GYE+++V ++K +++L+ P T GD
Sbjct: 28 KSALMSVIGCRTDETDLGGVMEEAEGYENLRVFSELKQFLLGDIRTLQDQLRPSKTNDGD 87
Query: 98 FLDAIVVGVDML----IKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMV 153
L A+ + V M+ K G+ K + + ++TD + D+ + +
Sbjct: 88 LLSALALAVQMIDGATQGKGGKPLKYDRRIIIVTDGRGSIDTDDL------------EQI 135
Query: 154 AFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSK--KSSAKTL-------FVDSTTSL 204
A +R V L G ++ D+ N F + KSS K FV+ +
Sbjct: 136 AAKIRDPEAPVDLVLLG-------VDFDDPDNGFKEEDKSSQKAKNEVSLKGFVEDCNGV 188
Query: 205 RGAR----------KTRDISPVTIFRGDLELSE------KMKIKVWVYKKTGEEKFPTLK 248
G + ++ PV F+G L L + + I V Y T K PT
Sbjct: 189 FGTLAEAIDQLQIPRLKETRPVPSFKGQLTLGDPGHYDATLTIDVERYPCTMLAKPPTAS 248
Query: 249 KYSDKA-----------------------PSTDKFATHEVKVDYEYKSVEDPS--KVVPP 283
++ + P TD A +V Y+ + E+P K V
Sbjct: 249 SFATRTDFGAGSAAGPSDESSHTMTGEEQPMTDLSAVRNQRV-YQVDNEEEPGMKKNVEM 307
Query: 284 EQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPG 343
++ +GY YG V IS ++ VK + + L+GF A R+ + N + + G
Sbjct: 308 DELERGYEYGRTAVHISESDMNVVKLETTPMLSLIGFVKAEAFERYLPLSRSNFLVPQRG 367
Query: 344 NSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNV-L 402
N A +++S+ A+ E + A+ R V ++ + V+V +L P +I + +V L
Sbjct: 368 NQAAQLSLSSFIHALYEADCYAVARLVTKELKPPVIV-LLVP----RIEVEWEALVDVEL 422
Query: 403 PFAEDVREFQFPSFS-KFPVSWQ--------PNEQQQEAADNLVKMLDLAPSGK------ 447
PF ED+R ++FP K +S + P ++ +A V +DL+ G+
Sbjct: 423 PFEEDMRRYKFPPLDRKLTISGKVITEHKDLPTDELTDAMSKYVDAMDLSTFGRDEDGNP 482
Query: 448 GEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDS--LKKITEPDPTLLAESQSAID 505
E +PE T +P + R H + ++ H D + P S L K P LL S S +
Sbjct: 483 AEYAKPEDTFSPIVHRIGHIIRWRATHPDPSLPMPPPSDILTKYANPPADLLDASTSQFE 542
Query: 506 AF-CGQFVIKENPKLKKSTRRFL--REKP-SGSDEPNGDGSVSDAQAVNSMESKPVVTVD 561
A V K PK+K +R R+KP SG D ++++ P
Sbjct: 543 ALKKAARVSKVPPKVKGRGKRNRAERDKPISGLD-------------IDALLGNPNRVKI 589
Query: 562 KIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRK 621
+L P F+ ++ D + + +A + M +I L+ +S Y +A+E L +R
Sbjct: 590 DPSNLVP--SFKNALAASDDLETIKEAAQSMSTEIRSLIRSSVGDSGYGRALEALRVMRD 647
Query: 622 GCILEQEPKQFN--------DVLEKVCKICRKRNFSTFFDFLMSKKLSLISKSEAVDSDI 673
+EP+ +N D+LE RK + + + L+ + + SD+
Sbjct: 648 ELTELEEPEIWNEFIRGLKSDLLEGKLNGNRKDMWWK----IRGNRYGLVDRKRSFVSDV 703
Query: 674 TDDEAGSF 681
T++EA +F
Sbjct: 704 TEEEASAF 711
>sp|Q9HGM8|KU80_SCHPO ATP-dependent DNA helicase II subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pku80 PE=1 SV=1
Length = 695
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 146/648 (22%), Positives = 270/648 (41%), Gaps = 57/648 (8%)
Query: 32 LIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL-- 89
L K L K VG++ + ++T+N+L E Y ++ VL I+ +QS+
Sbjct: 40 LSHKFLANRKTDVVGIVGYKCDDTKNDLA-EQEAYWNISVLYPIQTALFSKLQSVSQTLK 98
Query: 90 PQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIA 149
P T GD + AIVV D L+ ++ + K KK + ++T A + D +Q+
Sbjct: 99 PSNTMQGDLISAIVVSFD-LMARHCKKNKWKKKMIVLTAARGIIDFSDYIGIAEQLLQHD 157
Query: 150 RQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARK 209
+ +G+ + S + + EN+ + F + + + G
Sbjct: 158 VFLGVYGVDFDQEDINYSEPLKESQKK--ENEVRIQEFVESCHGQYCTFQQIYNNIGKPW 215
Query: 210 TRDISPVTIFRGDLELSEK------MKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATH 263
R + PV IFRG + + + I+V Y +T K PT + + S + +
Sbjct: 216 VRKVRPVAIFRGTFSIGNRDSKDTSISIQVERYPRTRLTKPPTSSAFYENDMSKNYECLN 275
Query: 264 EVKVDYEYKSVE-------------DP----SKVVPPEQRIKGYRYGPQVVPISSAEWEA 306
+ E KS+E DP S V E GY YG +VPIS ++ +
Sbjct: 276 IENSNVENKSMESDAVSTVRSYMVRDPKTNDSFEVKREDLESGYSYGRTIVPISRSDEDV 335
Query: 307 VKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAI 366
+ ++LGF S++ +Y + D N+ + + + + + SA ++++ ++ A+
Sbjct: 336 LALDTIPGYEILGFIPKSSLPIYYTISDTNIIVPK-DDFESKLNFSAFVQSLEREHRYAL 394
Query: 367 VRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNV-LPFAEDVREFQFPSFSKFPVSWQP 425
R V + V++ VL P V K + + ++ LPFAEDVR + F F K + +
Sbjct: 395 ARFVSKDKGVPVLL-VLMPYVEFKRH----YLVDIQLPFAEDVRPYSFSEFEKLS-NEED 448
Query: 426 NEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAP----PP 481
Q A N + +DL S G P P H L+ + +P P
Sbjct: 449 MRQIDFAVSNYIDNMDLDSSDCG--FNPPFEPENTFSMIPHRLQQAISYYANSPEGDLPQ 506
Query: 482 LDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGDG 541
+ L + T P +LL + + + K K S+ +E + P +
Sbjct: 507 PNIYLTRYTNPPKSLLDNCILDLKLIKEKLTVNVPVKPKYSS----QETAFDTGAPISEE 562
Query: 542 SVSDA--QAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGL 599
+ + ++ E + ++ + + + P+ F ++ P ++ A+ +M+ I L
Sbjct: 563 QIEELLNSGLDEQEGEKLLVL-HVSEKDPVGTFTEVLKN---PFGLEDALTEMEKVIKNL 618
Query: 600 LENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRN 647
++ S Y A++ L +LR ILE E ++FN+ L ++ K + N
Sbjct: 619 IDKS----KYDLALQSLQSLRLHSILEDEVERFNEYLTRLKKDVMQNN 662
>sp|Q7SA95|KU70_NEUCR ATP-dependent DNA helicase II subunit 1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=ku70 PE=3 SV=2
Length = 645
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 122/545 (22%), Positives = 221/545 (40%), Gaps = 112/545 (20%)
Query: 5 REALLLLLDVSPSM--------------HSVLPDVEKLCSRLIQKKLIYGKNHEVGVILF 50
++A+L +DVS SM S L +++Q+++I +GV+LF
Sbjct: 29 KDAVLFAIDVSKSMLKPPQNTGDKKADKDSALTAALTCAYQIMQQRIISQPKDMMGVLLF 88
Query: 51 GTEETENELTKEVG-GYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDFLDAI------- 102
GTE+++ G GY H +L D+ + V+ LK L + GD D I
Sbjct: 89 GTEKSKFRDDSGNGTGYPHCYLLSDLDIPGAEDVKKLKALIED---GDDEDEIMVPSKEP 145
Query: 103 VVGVDML-----IKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVST---------- 147
V+ +ML + G + L ++TD DP G K+ + S
Sbjct: 146 VIMSNMLFCANQVFTTNAANFGSRRLFIVTDN----DDPHAGDKQAKSSAAVRAKDLYDL 201
Query: 148 --------IARQMVAFGLR-------MKNIVVRASLSGEPHMR-----VIIENDNLLNIF 187
I+R+ F L +N A S P + + N + NI
Sbjct: 202 GVVIELFPISREDKKFDLSKFYDDIIYRNPAAEAGQSESPKTSKSGDGLTLLNSLISNIN 261
Query: 188 SKKSSAKTLFVDSTTSLRGARKTRDISPVTI-FRGDLELSEKMKIK-VWVYKKTGEEKFP 245
SK++ ++ F + L +TI +G + L+ + + +VY+ GEE+
Sbjct: 262 SKQTPKRSYFSNLPFELAPG--------LTISIKGYMPLNRQTPTRSCYVYE--GEEQAQ 311
Query: 246 TLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWE 305
++ + +VD+ ++VE + KGY++G + + E
Sbjct: 312 VVQ-------------SETAQVDFAARTVEK-------SELRKGYKFGGEHICFKPEELA 351
Query: 306 AVKFKPEKSVKLLGFTDASNILRHYYM-KDVNLFIAEPGNSRATVAVSALARAMKEMNKV 364
+K +K+++++GF S I + K + +F +E +T SAL + + + +KV
Sbjct: 352 ELKQMGKKTLRIIGFKKRSKIPSWASVKKSIFIFPSEEQYVGSTRVFSALWQKLLKDDKV 411
Query: 365 AIVRCVWRQGQQSVVVGVL---TPNVSEKIN--IPDSFYFNVLPFAEDVREFQFPSFSKF 419
I V R+ V+V + P+ E +P + LPFA+DVR S
Sbjct: 412 GIAWFVARENAHPVMVAIFPSGNPDDEEANTPYLPAGLWLYPLPFADDVR-----SVDHV 466
Query: 420 PVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAP 479
+P ++ + +++ L L + + P PNP+L+ Y L+ K+ ++ P
Sbjct: 467 TAPPRPADELTDQMRQVIQNLQLPKA----MYDPRKYPNPSLQWHYKILQAKALDEE-TP 521
Query: 480 PPLDD 484
+DD
Sbjct: 522 DAMDD 526
>sp|Q0U5F2|KU70_PHANO ATP-dependent DNA helicase II subunit 1 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=KU70 PE=3
SV=1
Length = 652
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 110/560 (19%), Positives = 218/560 (38%), Gaps = 96/560 (17%)
Query: 5 REALLLLLDVSPSMHSVLPDVE--------------KLCSRLIQKKLIYGKNHEVGVILF 50
++A+L +DVSPSM P E K +L+Q+++I N +G++LF
Sbjct: 28 KDAVLFAIDVSPSMLERPPKTEDKKADRDSPTSAALKCAYQLMQQRIISNPNDMMGILLF 87
Query: 51 GTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQG----------TCAGDFLD 100
GTE+T+ L ++H +L D+ V V+ L+ L + G +
Sbjct: 88 GTEKTD--LKDGDSTFQHCYLLADLDVPSAQDVKRLRDLVEDEEEAEQILKPAKDGASIA 145
Query: 101 AIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGL--- 157
++ + + + ++ L L+TD P+ +V +D T AR + G
Sbjct: 146 TVLFCANQIFTTKAPNFSSRR-LFLVTDNDYPV---NVKADKDTAVTRARDLYDLGCTID 201
Query: 158 --------------RMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTS 203
R + +V + +P + + + +K TL +S
Sbjct: 202 LFPISQPDQTFDRSRFYDDLVYPTSPSDPDAPIAVATTTKV---AKSGEGITLLKQLISS 258
Query: 204 LRGARKTRDISPVTIFRGDLELSEKMKIKVWVY---KKTGEEKFPTLKKYSDKAPSTDKF 260
+ R +F LEL ++I V Y K+ K + DK
Sbjct: 259 INSKATPRR----ALFSLPLELGPDLRIGVKGYILIKRQEHAKSCYVWVGGDKPQIVSSS 314
Query: 261 ATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFK-PEKSVKLLG 319
+H +D ++VV + K Y++G + + E ++ + ++++G
Sbjct: 315 TSH---------MADDTARVVEKTELRKAYKFGGDAITFTPDEIIKIRQAFGDPIIRIIG 365
Query: 320 FTDASNI-LRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSV 378
F S + + K ++ +E +T SAL + + + K+ +V + R+ +
Sbjct: 366 FKPISCLPIWTNTNKATFIYPSEADFIGSTRVFSALQQKLLKSKKMGLVWFIARRNAAPI 425
Query: 379 VVGVLTPNVSEKIN------IPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEA 432
+ ++ E+ N +P + LP+A+D+R+F P+ + + +
Sbjct: 426 LSALIP--AEEQTNEDGEQAMPPGLWLVPLPWADDIRQFPSPAADVLKTT----DALTDK 479
Query: 433 ADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEP 492
+++ L L P G + P PNP L+ FY L+ + ++ P D ++ K +
Sbjct: 480 MRIIIEQLQL-PKG---VYDPAKYPNPDLQWFYRILQAMALEEELPEKPDDKTMPKFRQ- 534
Query: 493 DPTLLAESQSAIDAFCGQFV 512
ID CG+++
Sbjct: 535 -----------IDKRCGEYI 543
>sp|O94395|KU70_SCHPO ATP-dependent DNA helicase II subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pku70 PE=1 SV=1
Length = 607
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 102/532 (19%), Positives = 213/532 (40%), Gaps = 93/532 (17%)
Query: 1 MARTREALLLLLDVSPSMHSVLPD-------VEKLCS-RLIQKKLIYGKNHEVGVILFGT 52
A + A+L +++VSPSM + + + +C+ +L +++I + +GV+L+GT
Sbjct: 13 FAIGKYAILFVIEVSPSMLDPVDEFTPSSLQMALICAYQLAAQRVITNPSDIMGVLLYGT 72
Query: 53 EETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQG---------TCAGDF-LDAI 102
E + G + + +L DI D ++SL+ + C+ L ++
Sbjct: 73 ESS-------TGRFANQMMLLDIDPPDAERIKSLQSFEKDFQFSKEKFKPCSCQVSLSSV 125
Query: 103 VVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNI 162
+ ++ E ++ K L LITD P D T+ D + A+ + +++ +
Sbjct: 126 LYHCSVIFTTKAENFE--KRLFLITDNDHPAWD---ATERDIILQRAKDLRDLDIQVHPV 180
Query: 163 VV-------RASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISP 215
+ R ++ + ++ ++ N+ ++ + ++ T+L+ ++
Sbjct: 181 FLDPPTHSFRINIFYSDFLYIVYGRQDVSNLVNRGQAQLQHMLNMITALQKPKRAH---- 236
Query: 216 VTIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVE 275
F ++L ++I G E F LK+ K ++ Y E
Sbjct: 237 ---FHLKMDLGNDVRI--------GVEAFILLKR------------LESAKTNWVYAKGE 273
Query: 276 DPSKVVPPEQRI--------------KGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFT 321
+ VP +++ + Y YG V S E V+ +++++GF
Sbjct: 274 RFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELNKVRSFEPPTLRIIGFR 333
Query: 322 DASNILRHYYMKDVNLFIAEPGNSRATVAV-SALARAMKEMNKVAIVRCVWRQGQQSVVV 380
D S + + +K + + AV SA+ + + NK+ I V R V
Sbjct: 334 DFSTLKPWHCLKPAVFLRPKDDEIIGSGAVFSAIHKKLLASNKIGIAWFVSRPNANPCFV 393
Query: 381 GVL-TP---NVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNL 436
+L TP ++ + +P + LP A+D+R P + P+S N E +
Sbjct: 394 AMLATPGSIHIRDDFELPLGIFLVQLPTADDIRS--LPPINPNPISMPSN--LIETMQRI 449
Query: 437 VKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKK 488
++ ++L QP NP+L+ Y L+ + ++ +D++L K
Sbjct: 450 LRGMELRS------YQPGKYNNPSLQWHYKVLQALALDEEIPTDFVDNTLPK 495
>sp|Q5AVC7|KU70_EMENI ATP-dependent DNA helicase II subunit 1 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=ku70 PE=3 SV=1
Length = 629
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 115/548 (20%), Positives = 218/548 (39%), Gaps = 81/548 (14%)
Query: 27 KLCSRLIQKKLIYGKNHEVGVILFGTEET----ENELTKEVGGYEHVKVLQDIKVVDGHL 82
K L+Q+++I +GV+L+GT+++ E+E ++ Y + + D+ + H
Sbjct: 41 KCAYHLMQQRIISNPRDMIGVLLYGTKQSKFYDEDENSRGDLTYPNCYLFTDLNIPSAHE 100
Query: 83 VQSLKHLPQGT-CAGDFLDAIVVGVDM--LIKKYGETYKGK------KHLCLITDALCPL 133
V L+ L Q A L+ V M L+ + + K + L ++TD P
Sbjct: 101 VLELRSLVQDEENAKKILEPSNEPVSMANLLFCVNQIFTLKAPNFLSRRLFIVTDNDNPH 160
Query: 134 KDPDVGTKEDQVSTIARQMVAFGLRMK------------------NIVVRASLSGEPHMR 175
D + + A+ + G+ ++ +I+ +AS +P
Sbjct: 161 GD--NKSFRSAATVRAKDLYDLGVTIELFPISQIEHEFDTSKFYDDIIYKAS-PNDPDAP 217
Query: 176 VIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMKIKV-- 233
++ D +N S + S S R+ + LEL KI V
Sbjct: 218 AYLKPDAKMNDAQDGISLLNGLLSSINSRSVPRRAQ------FSNMSLELGPNFKISVSG 271
Query: 234 WVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYG 293
++ K E + P K T ++ +D ++ + + K Y++G
Sbjct: 272 YILFKRQESARSCYVWLGGEKPQIAKGVTTQI--------ADDSARTIEKWEIKKAYKFG 323
Query: 294 PQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKD-VNLFIAEPGNSRATVAVS 352
V + E +++K E ++++GF S + +K + ++ E +T S
Sbjct: 324 GDQVCFTPEEQKSLKDFGEPVIRIIGFKPLSTLPFWANIKHPLFIYPTEEDYVGSTRVFS 383
Query: 353 ALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKIN------IPDSFYFNVLPFAE 406
AL + + KVA+V + R+ S V+G + EK++ IP + LPFA+
Sbjct: 384 ALYQKLLRDQKVALVWYIARKAA-SPVLGAMMAG-EEKVDENGIQKIPPGMWIIPLPFAD 441
Query: 407 DVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYH 466
DVR Q P + V+ +P Q +++ L L P G + P+ PNP+L+ Y
Sbjct: 442 DVR--QNPE-TALQVAPEPLIDQMR---TVIQQLQL-PKG---VYDPQKYPNPSLQWHYR 491
Query: 467 HLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRF 526
L+ + +D P D ++ K + ID G +V+ +L+K +
Sbjct: 492 ILQALALDEDVPEKPDDKTIPKYRQ------------IDKRAGGYVLDWADELEKQYAKI 539
Query: 527 LREKPSGS 534
++P +
Sbjct: 540 TADQPKST 547
>sp|Q6CCK2|KU70_YARLI ATP-dependent DNA helicase II subunit 1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=KU70 PE=3 SV=1
Length = 585
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 124/297 (41%), Gaps = 52/297 (17%)
Query: 232 KVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYR 291
K WVY TG EK P K + V ++E V + R K ++
Sbjct: 266 KAWVY--TGGEK-----------PEIAKLESQAV-------TIESGRSVDKADLR-KTFK 304
Query: 292 YGPQVVPISSAEWEAVKFKPEKSVKLLGF---TDASNILRHYYMKDVNLFIAEPGNSRAT 348
+G VP + + +++ E +++LGF +D S + H + L+ + +
Sbjct: 305 FGNDYVPFTEEQLTQIRYFGEPIIRILGFHNSSDFSELFIHSVRSSMFLYPTDEKLVGSI 364
Query: 349 VAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDV 408
A SAL +++K +K+A+ + R+G + ++ +L P+ E + + LPF +D+
Sbjct: 365 RAFSALYQSLKNKDKMALAWVIVRKGAKP-ILALLIPSTKE----IEGLHMVFLPFTDDI 419
Query: 409 REFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHL 468
R Q P VS P + +A N+ L + P G + + PNP L+ Y +
Sbjct: 420 R--QEPKTEL--VSAAP--ELVDATKNIFTRLRM-PGG----FESQRYPNPRLQWHYRVV 468
Query: 469 ELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRR 525
+ ++ P D + K +ID G + + N L+ S++R
Sbjct: 469 RAMALQEEVPKVPEDKTTPKY------------RSIDTRVGDAIEEWNKVLQSSSKR 513
>sp|Q2MHH4|KU70_ASPOR ATP-dependent DNA helicase II subunit 1 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=ku70 PE=3 SV=1
Length = 655
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 125/589 (21%), Positives = 233/589 (39%), Gaps = 104/589 (17%)
Query: 5 REALLLLLDVSPSMHSVLPDVE--------------KLCSRLIQKKLIYGKNHEVGVILF 50
++A+L ++VS SM + P + K L+Q+++I +GV+L+
Sbjct: 29 KDAVLFAIEVSDSMLTPRPSSDSKKPAEESPTTAALKCAYYLMQQRIISNPRDMIGVLLY 88
Query: 51 GTEET----ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDFLDAIVVG 105
GT+ + E+E ++ Y H + D+ V V++L+ L Q G + D L A
Sbjct: 89 GTQASKFYDEDENSRGDLSYPHCYLFTDLDVPSAQEVKNLRALAQDGDESKDVLKASGER 148
Query: 106 VDM--LIKKYGETYKGK------KHLCLITDALCPLKDPDVGTKEDQVSTI-ARQMVAFG 156
V M ++ + + K + L ++TD P D ST+ A+ + G
Sbjct: 149 VSMANVLFCANQIFTSKAPNFLSRRLFIVTDNDDPHGD---NKSLRSASTVRAKDLYDLG 205
Query: 157 LRMK------------------NIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFV 198
+ ++ +I+ +AS S +P ++ D SK S A +
Sbjct: 206 VTIELFPISRPGHEFDTARFYDDIIYKASPS-DPDAPAYLQTD------SKASPATGDGI 258
Query: 199 DSTTSLRGARKTRDISPVTIFRG-DLELSEKMKIKVWVY-----KKTGEEKFPTLKKYSD 252
+L +R + F LEL +KI V Y + F L
Sbjct: 259 SLLNTLLSNINSRSVPRRAQFSNIPLELGPNLKISVSGYLLFKRQAPARNSFIWL---GG 315
Query: 253 KAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPE 312
+ P K T ++ +D ++ + + K Y++G V + E ++++ +
Sbjct: 316 EQPQIVKGVTTQI--------ADDTARTIEKWEIKKAYKFGGDQVAFTPEEMKSLRNFGD 367
Query: 313 KSVKLLGFTDASNILRHYYMKDVN-LFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVW 371
++++GF S + +K + ++ +E +T SAL + + K A+V +
Sbjct: 368 PVIRIIGFKPLSALPFWANIKHPSFIYPSEEDFVGSTRVFSALHQTLLRDKKAALVWFIA 427
Query: 372 RQGQQSVVVGVLTPNVSEKIN------IPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQP 425
R+ S V+G + EK++ P + LPFA+DVR Q P + V+ +P
Sbjct: 428 RKNA-SPVLGAMVAG-EEKLDESGVQKFPPGMWIIPLPFADDVR--QNPE-TTLHVAPEP 482
Query: 426 NEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDS 485
Q +V+ L L + P PNP+L+ Y L+ + +D P D +
Sbjct: 483 LIDQMRY---IVQQLQLPKAS----YDPFKYPNPSLQWHYRILQALALDEDLPEKPEDKT 535
Query: 486 LKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGS 534
L + + ID G +V+ +L+K + P +
Sbjct: 536 LPRYRQ------------IDKRTGDYVLSWADELEKQYAKISAHGPKST 572
>sp|Q04437|KU80_YEAST ATP-dependent DNA helicase II subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YKU80 PE=1 SV=1
Length = 629
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 288 KGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEP--GNS 345
K YRYG V + S + ++ + L GF + + R++ + + A+ G
Sbjct: 315 KAYRYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRYFLTSESSFITADTRLGCQ 374
Query: 346 RATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPD------SFYF 399
+A SAL M E K+A+ R V ++ + V + L P + E NI S
Sbjct: 375 SDLMAFSALVDVMLENRKIAVARYVSKKDSE-VNMCALCPVLIEHSNINSEKKFVKSLTL 433
Query: 400 NVLPFAEDVREFQFPSF 416
LPFAED R FP
Sbjct: 434 CRLPFAEDERVTDFPKL 450
>sp|Q1DU75|KU70_COCIM ATP-dependent DNA helicase II subunit 1 OS=Coccidioides immitis
(strain RS) GN=KU70 PE=3 SV=2
Length = 647
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 31/251 (12%)
Query: 288 KGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVN-LFIAEPGNSR 346
K Y++G + V + E A++ + ++++GF S++ K ++ +E G
Sbjct: 340 KAYKFGGEHVAFTQEEQSALRNFGDPVIRIIGFKPMSSLPIWASTKHSTFIYPSEAGFVG 399
Query: 347 ATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKIN------IPDSFYFN 400
+T SAL + + + K A+V V R+ + V+ L P EK++ IP +
Sbjct: 400 STRVFSALQQTLLKQKKFALVWFVARK-NAAPVMAALIPG-EEKLDDNDAQVIPPGMWIQ 457
Query: 401 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPA 460
LPFA+D+R Q P ++ +E ++++L L P G+ P+ PNP+
Sbjct: 458 PLPFADDIR--QNPETHNIVAPEPLIDKMRE----IIQVLQL-PKGR---YDPQRYPNPS 507
Query: 461 LERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLK 520
L+ Y L+ + LD+ L E D T+ Q ID G+ V++ +L+
Sbjct: 508 LQWHYRILQALA---------LDEDLPDQAE-DKTIPKYKQ--IDKRAGEHVLEWGEELE 555
Query: 521 KSTRRFLREKP 531
R KP
Sbjct: 556 TQNRLLENSKP 566
>sp|Q2MHH3|KU70_ASPSO ATP-dependent DNA helicase II subunit 1 OS=Aspergillus sojae
GN=ku70 PE=3 SV=1
Length = 655
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 123/588 (20%), Positives = 233/588 (39%), Gaps = 102/588 (17%)
Query: 5 REALLLLLDVSPSMHSVLPDVE--------------KLCSRLIQKKLIYGKNHEVGVILF 50
++A+L ++VS SM + P + K L+Q+++I +GV+L+
Sbjct: 29 KDAVLFAIEVSDSMLTPRPSSDSKKPAEESPTTAALKCAYHLMQQRIISNPRDMIGVLLY 88
Query: 51 GTEET----ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDFLDAIVVG 105
GT+ + E+E ++ Y H + D+ V V++L+ L Q G + D L A
Sbjct: 89 GTQASKFYDEDENSRGDLSYPHCYLFTDLDVPSAQEVKNLRALAQDGDESEDVLKASGER 148
Query: 106 VDM--LIKKYGETYKGK------KHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGL 157
V M ++ + + K + L ++TD P D + + A+ + G+
Sbjct: 149 VSMANVLFCANQIFTSKAPNFLSRRLFIVTDNDDPHGD--NKSLRSAATVRAKDLYDLGV 206
Query: 158 RMK------------------NIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVD 199
++ +I+ +AS S +P ++ D SK S A +
Sbjct: 207 TIELFPISRPDHEFDTARFYDDIIYKASPS-DPDAPAYLQTD------SKASPATGDGIS 259
Query: 200 STTSLRGARKTRDISPVTIFRG-DLELSEKMKIKVWVY-----KKTGEEKFPTLKKYSDK 253
++L + +R + F LEL KI V Y + F L +
Sbjct: 260 LLSTLLSSINSRSVPRRAQFSNIPLELGPNFKISVSGYLLFKRQAPARNSFIWL---GGE 316
Query: 254 APSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEK 313
P K T ++ +D ++ + + K Y++G V + E ++++ +
Sbjct: 317 QPQIVKGVTTQI--------ADDTARTIEKWEIKKAYKFGGDQVAFTPEEMKSLRNFGDP 368
Query: 314 SVKLLGFTDASNILRHYYMKDVN-LFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWR 372
++++GF S + +K + ++ +E +T SAL + + K A+V + R
Sbjct: 369 VIRIIGFKPLSALPFWANIKHPSFIYPSEEDFVGSTRVFSALHQTLLRDKKAALVWFIAR 428
Query: 373 QGQQSVVVGVLTPNVSEKIN------IPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPN 426
+ S V+G + EK++ P + LPFA+DVR Q P + V+ +P
Sbjct: 429 KNA-SPVLGAMVAG-EEKLDESGVQKFPPGMWIIPLPFADDVR--QNPE-TTLHVAPEPL 483
Query: 427 EQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSL 486
Q +V+ L L + P PNP+L+ Y L+ + +D P D +L
Sbjct: 484 IDQMRY---IVQQLQLPKAS----YDPFKYPNPSLQWHYRILQALALDEDLPEKPEDKTL 536
Query: 487 KKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGS 534
+ + ID G +V+ +L+K + P +
Sbjct: 537 PRYRQ------------IDKRTGDYVLSWADELEKQYAKISAHGPKST 572
>sp|Q26228|KU70_RHIAP ATP-dependent DNA helicase 2 subunit 1 OS=Rhipicephalus
appendiculatus GN=ku70 PE=2 SV=1
Length = 600
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 102/480 (21%), Positives = 182/480 (37%), Gaps = 55/480 (11%)
Query: 45 VGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSL--------KHLPQGTCAG 96
VG+ILFGT++ N +++V VLQD++ V L K Q G
Sbjct: 72 VGIILFGTDKDNNP-----NRFKNVYVLQDLESPGAESVLKLEKLIADGPKKFKQEYGHG 126
Query: 97 DFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFG 156
+ A V+ L+ + ++ G++ + ++T+ P K G +D+ A+ ++ G
Sbjct: 127 NVNMADVLWTCALM--FSKSRAGQRRVLVLTNQDDPHKGS--GDLDDKAVVKAKDLLQSG 182
Query: 157 LRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPV 216
+ + +V G+ R I NL+ D L + +D
Sbjct: 183 IELD--LVHLKPPGDKKFRPQILYKNLVTDKENYEDGFPEASDKMEELLLRVRMKDHKKR 240
Query: 217 TIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFA--THEVKVDYEYKSV 274
+ L ++K+ V +Y PT K P+T + A +E +
Sbjct: 241 RLMSLPFWLGPEVKMSVSLYNLVR----PTGK------PATTRLARDNNEELLSRRITYA 290
Query: 275 EDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKD 334
D ++ + P K YG + E + +K ++LLGF S + + +++
Sbjct: 291 MDSAEALMPGDISKTQEYGGRKAYFDICEVKQIKSMAPPGLQLLGFKPLSYLEKQPHVRP 350
Query: 335 VNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVW--RQGQQSVVVGVLTPNVSEKIN 392
+ + G+ R + + A ++VA + C W R Q +V +L +
Sbjct: 351 SHFVYPDEGSVRGSTRLFAALLQSCLRHRVAPI-CFWISRAAQAPKLVYLLAQEEERDPH 409
Query: 393 ----IPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKG 448
+P F+ LPF++D R Q E +A LV +
Sbjct: 410 GLQMVPPGFHVVQLPFSDDRRRLQ-----------ALQEGTTKATPGLVALAREMAEKLR 458
Query: 449 EILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPD-PTLLAESQSAIDAF 507
P+ NP L+ F+ LE + +D A P K T PD + A++ +DAF
Sbjct: 459 FTYHPDKFENPELQGFWSCLEALALDRDDAEHP-----KDYTRPDHEKMKAKAGEEMDAF 513
>sp|A5G742|Y3454_GEOUR Probable DNA repair protein Gura_3454 OS=Geobacter uraniireducens
(strain Rf4) GN=Gura_3454 PE=3 SV=1
Length = 261
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 279 KVVPPEQRIKGYRYGP-QVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNL 337
K+VPP++ I+GY GP + +PI+ E E+V + ++++++ F D + + YY L
Sbjct: 55 KMVPPDEIIRGYEIGPDRYLPITDEELESVSPERSRTIEIVEFIDMNEVDPIYYDHPYYL 114
Query: 338 FIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVV----GVLT 384
+ G A L M+ NK + + V + + V V G LT
Sbjct: 115 VPLKGGEK----AYRLLVEVMRRTNKAGLAKFVLAEREYLVAVKSTEGALT 161
>sp|Q2H0I3|KU70_CHAGB ATP-dependent DNA helicase II subunit 1 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=KU70 PE=3 SV=1
Length = 622
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 5 REALLLLLDVSPSM--------------HSVLPDVEKLCSRLIQKKLIYGKNHEVGVILF 50
++A+L +DVS SM S + K + +Q+++I +G++LF
Sbjct: 29 KDAVLFAIDVSSSMLQQPPATDKKRADKDSAIAAALKCAYQFMQQRIIAQPKDMMGILLF 88
Query: 51 GTEET--ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL 89
GTE++ +E+ GY H + D+ V V+SLK L
Sbjct: 89 GTEKSRFRDEVGGRSSGYPHCYLFTDLDVPAAEDVKSLKAL 129
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 138/334 (41%), Gaps = 49/334 (14%)
Query: 274 VEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMK 333
V+ ++ V + K Y++G E + FKPE++ L +LR K
Sbjct: 320 VDSATRTVDKSEVKKAYKFG----------GEYIHFKPEEAASLKNL--GGKVLRVIGFK 367
Query: 334 DVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPN-----VS 388
+L + A+V S +E V R+ ++V ++ S
Sbjct: 368 PRSLL-----PTWASVKKSIFIFPSEEH----FVGSTPRENANPIMVAIIPSRAMDDETS 418
Query: 389 EKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKG 448
E +P + LPFA+DVR + + P ++ + +V+ L L +
Sbjct: 419 ETPYLPAGLWLYPLPFADDVRNVDLAAPPR------PADELTDKMREIVQNLQLPKA--- 469
Query: 449 EILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDS----LKKITEPDPTLLAESQSAI 504
+ P PNP+L+ Y L+ + +D P LDD+ ++I + LAE + A+
Sbjct: 470 -MYNPLKYPNPSLQWHYKVLQAMALDED-VPEALDDATIPKYRQIDKRVGGYLAEWKEAL 527
Query: 505 DAFCGQFV----IKENPKLKKSTRRFL-REKPSGSDEPNGDGSVSDAQAVNSMESKPV-- 557
G + +K + + +R R KP+ E G G +S+AQ ++E +
Sbjct: 528 TEKAGGLMKSRAMKREAEDEDVSRPLAKRTKPAAPKEAAG-GHMSNAQLKAALEQDTLKK 586
Query: 558 VTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIED 591
+TV ++ D+ + A+ + + D +++ IE+
Sbjct: 587 MTVAELKDVLASKGVSAVGKKAELVDKLEQWIEE 620
>sp|A9KS68|Y1728_CLOPH Probable DNA repair protein Cphy_1728 OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=Cphy_1728 PE=3 SV=1
Length = 257
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Query: 279 KVVPPEQRIKGYRYGP-QVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNL 337
K V E +KGY Y + V I+ E E +K + EKS+++L F + I YY K
Sbjct: 52 KEVKTEDIVKGYEYDDDKYVVITDEEIEKIKTEKEKSIQILHFAQLNQISPVYYEKTYQA 111
Query: 338 FIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSF 397
+ E G + A L A+ K+AI + V G + ++ ++ P D
Sbjct: 112 -VPETGGEK---AFELLRSALMAEQKIAIGKTVM--GTKDTLMAII-PR-------EDGI 157
Query: 398 YFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLD 441
+ + +A+D++ Q ++K V NEQ+ A L+ +D
Sbjct: 158 LISTMFYADDIKAIQ-KQYTKPEV----NEQEFNMAKLLINSMD 196
>sp|P32807|KU70_YEAST ATP-dependent DNA helicase II subunit 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YKU70 PE=1 SV=2
Length = 602
Score = 40.8 bits (94), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 25/221 (11%)
Query: 287 IKGYRYGPQVVPISSAEWEAV---KFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPG 343
+K Y YG + +S ++ + V + + +K++GF +S + ++ D + FI P
Sbjct: 332 VKVYPYGDLDINLSDSQDQIVMEAYTQKDAFLKIIGFRSSSKSIHYFNNIDKSSFIV-PD 390
Query: 344 NSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLP 403
++ ++ LA +K + K + +W + + + + T + S + + FY +P
Sbjct: 391 EAKYEGSIRTLASLLKILRKKDKIAILWGKLKSNSHPSLYTLSPSSVKDYNEGFYLYRVP 450
Query: 404 FAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLD--LAPSGKGEILQPELTPNPAL 461
F +++R +FPS +S+ + + DN+ K+ + + P NP L
Sbjct: 451 FLDEIR--KFPSL----LSYDDGSEHKLDYDNMKKVTQSIMGYFNLRDGYNPSDFKNPLL 504
Query: 462 ERFY-----HHLELKSEHQDAAPPPL--------DDSLKKI 489
++ Y + L++++ + P DDSL+K+
Sbjct: 505 QKHYKVLHDYLLQIETTFDENETPNTKKDRMMREDDSLRKL 545
>sp|Q6CUB4|KU70_KLULA ATP-dependent DNA helicase II subunit 1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=KU70 PE=3 SV=1
Length = 592
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 279 KVVPPEQRIKGYRYGPQVVPISSAEWEAVKF---KPEKSVKLLGFTDASNILRHYYMKDV 335
+ V Q K Y +G +++ ++ E ++ + E +KL+GF L +Y DV
Sbjct: 327 EAVDNSQLSKVYTFGDEIIELTEDENLKIQSGYSEHESFLKLIGFRSTEQCLHYYDNIDV 386
Query: 336 NLFIA--EPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINI 393
F+ E + + +++L R M K A+V R + VLTP S K +
Sbjct: 387 PAFVVPNEEDYAGSIKTLASLYRTMLFKKKSAMVWGKLRPNSPPSMF-VLTP--SSKKDY 443
Query: 394 PDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQ--QEAADNLVKMLDLAPSGKGEIL 451
FY +PF E+VR + P F + ++ + + + L+ +L
Sbjct: 444 NQGFYLYKVPFMEEVR--KLPDFLNHSALIESDDYKVMSKVTETLINFFNLKNG-----Y 496
Query: 452 QPELTPNPALERFY 465
+P NPAL++ +
Sbjct: 497 RPSDFHNPALQKHF 510
>sp|B8FRH5|Y3719_DESHD Probable DNA repair protein Dhaf_3719 OS=Desulfitobacterium
hafniense (strain DCB-2 / DSM 10664) GN=Dhaf_3719 PE=3
SV=1
Length = 285
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 19/149 (12%)
Query: 262 THEVKVDYEYKSVEDPSKV----------VPPEQRIKGYRY-GPQVVPISSAEWEAVKFK 310
THE +Y +K + + V E IKGY Y V + + +++
Sbjct: 26 THEFHFNYLHKDCHNRIRYIKKCPHCEVEVAAENIIKGYEYEKDHYVIMEEEDLASLEAP 85
Query: 311 PEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCV 370
+S+ +L F D S+I YY K L E + A L +AM + KVAI +
Sbjct: 86 LSRSIDILDFIDLSDIDPIYYQKSYYLSPEEAAHK----AYKLLCQAMSDTGKVAIAKLT 141
Query: 371 WRQGQQSVVVGVLTPNVSEKINIPDSFYF 399
R Q + + + + I + ++ Y+
Sbjct: 142 MRSKQHLACLRI----IDQSIMVLETMYY 166
>sp|Q7F1M0|KU70_ORYSJ ATP-dependent DNA helicase 2 subunit KU70 OS=Oryza sativa subsp.
japonica GN=KU70 PE=1 SV=1
Length = 624
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 23/212 (10%)
Query: 283 PEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEP 342
P++R + Y ++V S+ E VK ++LLGF + L+ Y+ + FI
Sbjct: 322 PQKRFQ--VYNDKIVKFSTRELSDVKRVSSHHLRLLGFKPL-DYLKDYHNLRPSTFIYPS 378
Query: 343 -----GNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINI-PDS 396
G++R VA L +M+ + + A+ Q V + S I P
Sbjct: 379 DEQIFGSTRVFVA---LHSSMRRLGRFALAFYGNPTRPQLVALIAQEEVTSAGGQIEPPG 435
Query: 397 FYFNVLPFAEDVREFQFPSFSKFPVSWQP--NEQQQEAADNLVKMLDLAPSGKGEILQPE 454
+ LP+++DVR +P P ++Q + A NL++ +DL +
Sbjct: 436 IHMIYLPYSDDVR---YPEEVHLTSDDAPRATDEQIKKASNLLRRIDLKNFSVCQF---- 488
Query: 455 LTPNPALERFYHHLELKSEHQDAAPPPLDDSL 486
NPAL+R Y LE + +D P D++L
Sbjct: 489 --SNPALQRHYGILEALALGEDEMPDVKDETL 518
>sp|O34859|YKOV_BACSU Probable DNA repair protein YkoV OS=Bacillus subtilis (strain 168)
GN=ykoV PE=2 SV=1
Length = 311
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 23/203 (11%)
Query: 198 VDSTTSLRGARKTRDISPVTIFRGDLELS-EKMKIKVWVYKKTGEEKFPTLKKYSDKAPS 256
++ T SL K I T+++G + + IK++ + + K +L K D AP
Sbjct: 1 MNRTPSLHTKEKKGFIDMHTMWKGSISFGLVNIPIKLYAATEDKDIKLRSLHK-EDHAP- 58
Query: 257 TDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRY--GPQVVPISSAEWEAVKFK-PEK 313
+ YE K + K + P++ +KGY Y G VV ++ + +++K + EK
Sbjct: 59 ----------IKYE-KVCTNCEKTLSPDEIVKGYEYVKGKYVV-LTDEDLKSLKQEHEEK 106
Query: 314 SVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQ 373
+V+++ F I Y+ + + PG++ T A + L A++ K+ I R
Sbjct: 107 AVEIVDFVQLQEIDPIYFNRS---YFVGPGDN-GTKAYTLLREALRSTGKIGIANMTIRS 162
Query: 374 GQQSVVVGVLTPN-VSEKINIPD 395
QQ ++ V V E I+ PD
Sbjct: 163 KQQLAILRVYENCIVMESIHYPD 185
>sp|O93257|XRCC6_CHICK X-ray repair cross-complementing protein 5 OS=Gallus gallus
GN=XRCC6 PE=2 SV=1
Length = 632
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 20/193 (10%)
Query: 283 PEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEP 342
P + YG + + + E E VK + L+GF S + +H++++ E
Sbjct: 335 PSDTKRAQTYGNRQIAMEKEETEEVKRFDSPGLFLIGFKPLSMLKQHHHIRPSQFMYPEE 394
Query: 343 G-NSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSE----KINI-PDS 396
+ +T +AL E +A+ R + R+ +V L P E K+ I P
Sbjct: 395 SLVTGSTTLFNALLMKCLEKEVMALCRYIARRNTPPRIVA-LIPQEEEVDEQKVQIAPPG 453
Query: 397 FYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELT 456
F+ LP+A+D R F K P N +Q + +++ L + +
Sbjct: 454 FHIIFLPYADDKRNVDFT--EKVPA----NREQVDKMKGIIQKLRFK-------YRTDSF 500
Query: 457 PNPALERFYHHLE 469
NP L++ + +LE
Sbjct: 501 ENPVLQQHFRNLE 513
>sp|P0CO50|KU70_CRYNJ ATP-dependent DNA helicase II subunit 1 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=KU70 PE=3 SV=1
Length = 560
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 24/190 (12%)
Query: 299 ISSAEWEAVKFKPEKSVKLLGFTDASNI-----LRHYYMKDVNLFIAEPGNSRATVAVSA 353
++S +W + +K+LGF AS + L+H + ++ E + +T +A
Sbjct: 275 LNSGQWGS------NPIKVLGFQAASQLRFQDNLKHPFF----IYPNEEEYTGSTRTFAA 324
Query: 354 LARAMKEMNKVAIVRCVWRQGQQSVVVGVLTP----NVSEKINIPDSFYFNVLPFAEDVR 409
L + + N+ A+ C R VL P S P F+ +LP+ + +R
Sbjct: 325 LLNSCLKYNRHALALCRLRSNHVPEFC-VLIPQEEKTSSNGQEYPPGFHLIILPYKDSIR 383
Query: 410 EFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLE 469
P K Q + N +K + K +PE+ PNP+L Y L+
Sbjct: 384 ----PPPKKVAEFLQSPPIATDEQINAMKAVIKRTRFKAAAYRPEIYPNPSLAYHYDQLQ 439
Query: 470 LKSEHQDAAP 479
+ +D P
Sbjct: 440 ALAFEEDWDP 449
>sp|P0CO51|KU70_CRYNB ATP-dependent DNA helicase II subunit 1 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=KU70 PE=3
SV=1
Length = 560
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 24/190 (12%)
Query: 299 ISSAEWEAVKFKPEKSVKLLGFTDASNI-----LRHYYMKDVNLFIAEPGNSRATVAVSA 353
++S +W + +K+LGF AS + L+H + ++ E + +T +A
Sbjct: 275 LNSGQWGS------NPIKVLGFQAASQLRFQDNLKHPFF----IYPNEEEYTGSTRTFAA 324
Query: 354 LARAMKEMNKVAIVRCVWRQGQQSVVVGVLTP----NVSEKINIPDSFYFNVLPFAEDVR 409
L + + N+ A+ C R VL P S P F+ +LP+ + +R
Sbjct: 325 LLNSCLKYNRHALALCRLRSNHVPEFC-VLIPQEEKTSSNGQEYPPGFHLIILPYKDSIR 383
Query: 410 EFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLE 469
P K Q + N +K + K +PE+ PNP+L Y L+
Sbjct: 384 ----PPPKKVAEFLQSPPIATDEQINAMKAVIKRTRFKAAAYRPEIYPNPSLAYHYDQLQ 439
Query: 470 LKSEHQDAAP 479
+ +D P
Sbjct: 440 ALAFEEDWDP 449
>sp|Q54MA9|KU70_DICDI ATP-dependent DNA helicase ku70 OS=Dictyostelium discoideum GN=ku70
PE=3 SV=1
Length = 909
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 283 PEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEP 342
P Q Y YG + V + E + +K LLGF NI ++ +K +
Sbjct: 373 PSQIKLCYHYGGEPVIFTKDEMQTIKSIDRIGFTLLGFKPLENIKPYHSIKHSQFIFPDD 432
Query: 343 GNSRATV-AVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVL 383
+ + +V A +AL M + K AI R R +V ++
Sbjct: 433 QSIKGSVLAFNALVEQMLKSGKAAICRFTPRSSSSPRMVALI 474
>sp|Q975Y1|RADA_SULTO DNA repair and recombination protein RadA OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=radA
PE=3 SV=1
Length = 324
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 87 KHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLC--LITDALCPLKDPDVGTKEDQ 144
K + G+ A D L + + + +GE GK LC L + PL+ +G K
Sbjct: 87 KKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVY 146
Query: 145 VST--------IARQMVAFGLR----MKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSS 192
+ T I A GL M NI +++ + M ++ D+L + SK +
Sbjct: 147 IDTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINSDHQMAIV---DDLQELISKDPA 203
Query: 193 AKTLFVDSTTS 203
K + VDS TS
Sbjct: 204 IKLVIVDSVTS 214
>sp|A4FFJ9|Y3550_SACEN Probable DNA repair protein SACE_3550 OS=Saccharopolyspora
erythraea (strain NRRL 23338) GN=SACE_3550 PE=3 SV=1
Length = 324
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 17/184 (9%)
Query: 287 IKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSR 346
+KG G +V + +E + + K +++ + F D + I Y+ K + PG+
Sbjct: 62 VKGREVGGVLVAVEPSELDEIAPKLSRTIDINTFVDLNAIDPVYFQK---TYWLAPGSKE 118
Query: 347 ATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVV----GVLTPNV---SEKINIPDSFYF 399
+ L RAM E N+V I V R + V VL N +++I P
Sbjct: 119 HFRPYNLLRRAMDETNQVGIATFVMRGREYLTAVRAEDSVLALNTMFFADEIRDPGELVG 178
Query: 400 NVLPFAE-DVREFQFPSF--SKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELT 456
+ A+ +E Q + W+P + + + K+L+ G+ PE+
Sbjct: 179 DASSVAKPSDKEIQMATMIIESMSGDWEPEQYEDTYTARVEKLLEDKAEGRA----PEVE 234
Query: 457 PNPA 460
PA
Sbjct: 235 EAPA 238
>sp|P74331|Y905_SYNY3 Maf-like protein sll0905 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll0905 PE=3 SV=1
Length = 195
Score = 33.1 bits (74), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 82 LVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETY 117
LV++L GT A F DA+V+G D L+ G+TY
Sbjct: 45 LVEALAKAKAGTVASKFADALVLGCDSLLLVNGQTY 80
>sp|Q54873|HYSA_STRPN Hyaluronate lyase OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=SP_0314 PE=1 SV=2
Length = 1066
Score = 32.7 bits (73), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 570 QDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEP 629
QD + + RD +W+ K + + + I G + G P+A+ ++L K ++E
Sbjct: 378 QDETVVRTVRDSMEWMHKHVYNSEKSIVGNWWDYEIGT--PRAINNTLSLMKEYFSDEEI 435
Query: 630 KQFNDVLEKVC 640
K++ DV+EK
Sbjct: 436 KKYTDVIEKFV 446
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,463,204
Number of Sequences: 539616
Number of extensions: 11274548
Number of successful extensions: 29645
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 29515
Number of HSP's gapped (non-prelim): 81
length of query: 691
length of database: 191,569,459
effective HSP length: 124
effective length of query: 567
effective length of database: 124,657,075
effective search space: 70680561525
effective search space used: 70680561525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)