Query 005544
Match_columns 691
No_of_seqs 231 out of 1498
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 18:21:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005544.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2051-2054//hhsearch_pdb/005544hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jey_B KU80; double-strand DNA 1.0 1 1 718.4 54.9 506 1-527 1-551 (565)
2 1jey_A KU70; double-strand DNA 1.0 1 1 673.5 46.2 477 3-523 33-542 (609)
3 1rw2_A ATP-dependent DNA helic 1.0 1 1 267.6 13.2 134 550-687 19-152 (152)
4 1q2z_A ATP-dependent DNA helic 1.0 1 1 255.8 11.7 120 564-686 1-120 (120)
5 3ism_C CG4930; endonuclease, e 1.0 1 1 137.8 9.6 124 560-684 210-345 (359)
6 3ism_C CG4930; endonuclease, e 1.0 1 1 109.9 7.1 125 560-685 24-161 (359)
7 4b4t_W RPN10, 26S proteasome r 1.0 1 1 107.5 16.6 155 5-193 3-163 (268)
8 2x5n_A SPRPN10, 26S proteasome 1.0 1 1 96.3 17.1 161 5-200 2-172 (192)
9 3ibs_A Conserved hypothetical 1.0 1 1 90.4 14.8 163 5-200 11-197 (218)
10 2odp_A Complement C2; C3/C5 co 1.0 1 1 88.5 16.5 171 4-204 8-202 (509)
No 1
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=1.00 E-value=1 Score=718.38 Aligned_cols=506 Identities=23% Similarity=0.389 Sum_probs=439.8
Q ss_pred CCC--CCEEEEEEEECCCCCCC-------CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEE
Q ss_conf 989--87089999966978667-------715799999999999773178328999997489777533224799573899
Q 005544 1 MAR--TREALLLLLDVSPSMHS-------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKV 71 (691)
Q Consensus 1 ma~--~Kea~vflIDvs~sM~~-------~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgT~~t~n~l~~e~~~y~nI~v 71 (691)
||+ +||++|||||+|+||++ .|+.|++++..++++||+++++|+||||+|||+.+.|+++.+ ++|+||++
T Consensus 1 ~~~~~~ke~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d-~~y~~i~v 79 (565)
T 1jey_B 1 MVRSGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGG-DQYQNITV 79 (565)
T ss_dssp -----CCEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTT-TCSTTEEE
T ss_pred CCCCCCCEEEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC-CCCCCEEE
T ss_conf 98778854999999898576365888877599999999999999854899877999997667888855555-67885699
Q ss_pred EEECCCCCHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 83069999888999524-99999998645689999999999854688651239999389999999999994545999999
Q 005544 72 LQDIKVVDGHLVQSLKH-LPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIAR 150 (691)
Q Consensus 72 ~~~l~~~~~~~l~~L~~-l~~~~~~gd~~daL~va~d~l~~~~~~~k~~~krIvLiTd~~~p~~~~~~~~~~~~~~~ia~ 150 (691)
+++|+.++++.++.|.+ +..+...+++.+||++|+++|.+.+.+++...|||+|||||++|++. +++..+++
T Consensus 80 l~~l~~~~~~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~-------~~~~~~a~ 152 (565)
T 1jey_B 80 HRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSK-------SQLDIIIH 152 (565)
T ss_dssp EEEEECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCC-------TTHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH-------HHHHHHHH
T ss_conf 51378899999999986416888666689999999999998752135565189999379988788-------89999999
Q ss_pred HHHHCCCEEE-EEEECCC-----CCC------------CCC----CCHHHHHHHHHHHHHHCCCC-----EEEEHHHHHH
Q ss_conf 9763591899-9850358-----899------------998----40110114889998520798-----3753331688
Q 005544 151 QMVAFGLRMK-NIVVRAS-----LSG------------EPH----MRVIIENDNLLNIFSKKSSA-----KTLFVDSTTS 203 (691)
Q Consensus 151 ~l~~~gI~l~-vi~i~~~-----~~~------------~~~----~~~~~~ne~~l~~l~~~~~g-----~~~~~~~a~~ 203 (691)
++++.||.+. +||++.+ |+- .++ ......|+.+|+.++..++| .+++++++++
T Consensus 153 ~l~~~gI~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~~~~ 232 (565)
T 1jey_B 153 SLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLR 232 (565)
T ss_dssp HHHHTTEEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHHHTT
T ss_pred HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHH
T ss_conf 99865917999812477767765554445455543444551100461000048999999875178766523651999998
Q ss_pred HHCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEECCCCCC-CCCEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
Q ss_conf 53036544479720155558762981899999940354469-97257415799876445430268789850479999789
Q 005544 204 LRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTGEEKF-PTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 282 (691)
Q Consensus 204 ~l~~~~~k~~~~~~~~~g~L~ig~~l~I~V~~Y~~~~~~k~-p~~~~~~~~~~~~~~~~~~~v~~~~~y~~~~d~~~~V~ 282 (691)
++..++.+.++++ .|+|.|+||++++|+|++|++|+++++ ++++++..... ....|+.+|+|+.+++++++|+
T Consensus 233 ~l~~~k~~~~r~~-~~~g~l~lg~~v~I~V~~Y~~~~~~~~~~~~~~l~~~~~-----~~~~V~~~~~y~v~~~~~~~V~ 306 (565)
T 1jey_B 233 KLCVFKKIERHSI-HWPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTL-----KKEDIQKETVYCLNDDDETEVL 306 (565)
T ss_dssp SSTTTGGGCCCCC-CEEEEEEETTTEEEEEEEEEEECCCCCCCCCEEEETTTC-----CSTTEEEEEEEEESSSSCCEEC
T ss_pred HHCCCCCEEECCC-CCCCCEEECCCCEEEEEEEEEEHHCCCCCCEEEECCCCC-----CCCCEEEEEEEEECCCCCCCCC
T ss_conf 7536730132255-343336877875899998830001346774388247667-----7764489999995499886357
Q ss_pred CCCCCCCCCCCCCEEECCHHHHHHHCCCCC-CCEEEEEEEECCCCCCEECCCCE-EEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 322123222389057479455886503897-52899967408997430003870-9997299991328999999999996
Q 005544 283 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKDV-NLFIAEPGNSRATVAVSALARAMKE 360 (691)
Q Consensus 283 ~ed~~kgy~yG~~~Vp~s~~e~~~~k~~~~-k~l~ilGF~~~~~i~~~~~~~~~-~~i~p~~~~~~s~~afsaL~~Al~e 360 (691)
+++++|||+||+++|+|+++|++.+++.+. ++|+|+||+++++|+++|+++++ ||++|++++.+|..||+||++||.+
T Consensus 307 ~~di~kgy~yg~~~V~~~~ee~~~~~~~~~~~~l~ilgFv~~~~i~~~~~~~~s~y~l~p~~~~~~s~~af~aL~~al~~ 386 (565)
T 1jey_B 307 KEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALDD 386 (565)
T ss_dssp GGGEEEEEEETTEEEECCHHHHHHHSCCCCCSEEEEEEEEEGGGSCGGGCEEEEEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred HHHEEEEEECCCEEECCCHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 69905557427824136889998752057898679994530787888554278428995798873369999999999997
Q ss_pred CCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 59267999886289995279996041137788787079822787210268899988789999999988999999999871
Q 005544 361 MNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKML 440 (691)
Q Consensus 361 ~~~vaI~r~v~r~~~~p~~i~~L~P~~~~~~~~~~~l~~v~LPFaeDvR~~~fp~l~~~~~~~~p~~eq~~a~~~lId~m 440 (691)
+++|||||||+|.++. |.+++|.|+++.. +.||++++|||+||||.++||++... ....|+++|+++|++||++|
T Consensus 387 ~~kvaIar~v~r~~~~-p~l~aL~P~~~~~---~~gl~l~~Lpf~ddvR~~~f~~l~~~-~~~~~~~~~l~~a~~lId~m 461 (565)
T 1jey_B 387 LDMVAIVRYAYDKRAN-PQVGVAFPHIKHN---YECLVYVQLPFMEDLRQYMFSSLKNS-KKYAPTEAQLNAVDALIDSM 461 (565)
T ss_dssp TTEEEEEEEESSSSSC-CEEEEEEEEECSS---CEEEEEEECCCGGGBCCCCCCCSTTC-SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEECCCCC-CEEEEEECCCCCC---CCEEEEECCCCHHHCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHC
T ss_conf 7978999998859998-5799994543688---88499982477787314669987766-66899999999999999864
Q ss_pred CCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 779999-----886789999999346989999987414999999999255553059997899987999999982359865
Q 005544 441 DLAPSG-----KGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 515 (691)
Q Consensus 441 dl~~~~-----~~e~~~p~~~~NP~lqr~~~~i~~ral~~~~~~p~~~~~l~~~~~p~~~~~~~~~~~l~~~k~~f~~~~ 515 (691)
+++... .++.|+|+.++||++||||++|+++|++++.|+|+++++|.++++||..+.+++++++++|+++|++++
T Consensus 462 ~~~~~~~~~~~~~~~~~p~~~~np~lq~~~~~i~~kal~~~~~~p~~d~~l~~~~~p~~~~~~~~~~~l~~~k~~f~~~~ 541 (565)
T 1jey_B 462 SLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIE 541 (565)
T ss_dssp BCEECCTTSSCCEESCCGGGSCCHHHHHHHHHHHHHHHCTTSCCCCCCHHHHHHHSCCHHHHHHHHHHHHHHHHHSCCEE
T ss_pred CCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 68765456762001358444799899999999999856999899996877886438998999988999999998679530
Q ss_pred CCCCCCCHHHHC
Q ss_conf 886531001111
Q 005544 516 NPKLKKSTRRFL 527 (691)
Q Consensus 516 ~~~k~k~~~~~~ 527 (691)
+ ++|+.++.|
T Consensus 542 ~--~~k~~~~~~ 551 (565)
T 1jey_B 542 A--KKKDQVTAQ 551 (565)
T ss_dssp C--CCC------
T ss_pred H--HCCCCHHHH
T ss_conf 4--404610467
No 2
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=1.00 E-value=1 Score=673.52 Aligned_cols=477 Identities=18% Similarity=0.248 Sum_probs=402.0
Q ss_pred CCCEEEEEEEECCCCCCC--------CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 987089999966978667--------715799999999999773178328999997489777533224799573899830
Q 005544 3 RTREALLLLLDVSPSMHS--------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQD 74 (691)
Q Consensus 3 ~~Kea~vflIDvs~sM~~--------~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgT~~t~n~l~~e~~~y~nI~v~~~ 74 (691)
++||++|||||||+||+. .|+.|++|+..++++||+++++|+||||+|||+.|.|++ +|+||+++++
T Consensus 33 ~~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l-----~~d~i~v~~~ 107 (609)
T 1jey_A 33 SGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSV-----NFKNIYVLQE 107 (609)
T ss_dssp -CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTT-----CCTTEEEEEE
T ss_pred CCCEEEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC-----CCCCEEEEEC
T ss_conf 67469999997997886888888888299999999999998607789986999997567888867-----8897599842
Q ss_pred CCCCCHHHHHHHHCCCC-----------C-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCH
Q ss_conf 69999888999524999-----------9-99986456899999999998546886512399993899999999999945
Q 005544 75 IKVVDGHLVQSLKHLPQ-----------G-TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKE 142 (691)
Q Consensus 75 l~~~~~~~l~~L~~l~~-----------~-~~~gd~~daL~va~d~l~~~~~~~k~~~krIvLiTd~~~p~~~~~~~~~~ 142 (691)
|..|+++.++.|.++.. + ...+++.+||++|+++|.+ .++++..|+|||||||++|++. ++...
T Consensus 108 L~~~~~~~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~--~~~k~~~k~IiL~TDg~~p~~~--~~~~~ 183 (609)
T 1jey_A 108 LDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSD--VQFKMSHKRIMLFTNEDNPHGN--DSAKA 183 (609)
T ss_dssp EECCCHHHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHT--CSSCEEEEEEEEEESCSCTTTT--CHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH--HCHHHCCCEEEEECCCCCCCCC--CHHHH
T ss_conf 7889989999999876413402456526987887899999999999986--1443158889999189988888--55889
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCC--CCC-CCCCCHHH--HHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCCC
Q ss_conf 4599999997635918999850358--899-99840110--114889998520798375333168853036544479720
Q 005544 143 DQVSTIARQMVAFGLRMKNIVVRAS--LSG-EPHMRVII--ENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVT 217 (691)
Q Consensus 143 ~~~~~ia~~l~~~gI~l~vi~i~~~--~~~-~~~~~~~~--~ne~~l~~l~~~~~g~~~~~~~a~~~l~~~~~k~~~~~~ 217 (691)
.++..+++++++.||.+.+||+|.+ |.. .|+..+.. .++. +. ...+..++ +.+++..++.|.+++|+
T Consensus 184 ~~~~~~a~~l~~~gI~i~~igig~~~~fd~~~fy~~~~~~~~~~~-~~----~~~~~~~~---l~~ll~~i~~k~~~~R~ 255 (609)
T 1jey_A 184 SRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDED-LR----VHFEESSK---LEDLLRKVRAKETRKRA 255 (609)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEBCCTTCCCTTTTGGGTCC-------------CCCCCBCS---HHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCC-HH----CCCCCHHH---HHHHHHHHHHHHCCCEE
T ss_conf 999999999986594899982488776662554566641365531-00----03672356---99999988741036625
Q ss_pred EEEEEEEECCCEEEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 15555876298189999994035446997257415799876445430268789850479999789322123222389057
Q 005544 218 IFRGDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVV 297 (691)
Q Consensus 218 ~~~g~L~ig~~l~I~V~~Y~~~~~~k~p~~~~~~~~~~~~~~~~~~~v~~~~~y~~~~d~~~~V~~ed~~kgy~yG~~~V 297 (691)
.|+|+|+||++++|+|++|++|+++++++++++.... ...|+.+|+|+ +++++++|++++++|||+||+++|
T Consensus 256 ~~~g~l~lg~~v~I~V~~Y~~t~~~~~~~~~~l~~~~-------~~~V~~~~~~~-~~~~g~~V~~~di~kgy~yg~~~V 327 (609)
T 1jey_A 256 LSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRET-------NEPVKTKTRTF-NTSTGGLLLPSDTKRSQIYGSRQI 327 (609)
T ss_dssp SEEEEEESSSSCEEEEEEECSBCCCCCCCCEEEETTT-------TEEEEEEEEEE-ETTTCCBCCGGGEEEEEEETTEEE
T ss_pred EEEEEEEECCCCEEEEEEEEECCCCCCCCCEEECCCC-------CCCCEEEEEEE-ECCCCCCCCHHHCEEEEEECCEEE
T ss_conf 5663259789987989998610455688767975667-------74335899999-479877267566011110088550
Q ss_pred ECCHHHHHHHCCCCCCCEEEEEEEECCCCCCEECCCCEEEEECCCC-CHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 4794558865038975289996740899743000387099972999-913289999999999965926799988628999
Q 005544 298 PISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPG-NSRATVAVSALARAMKEMNKVAIVRCVWRQGQQ 376 (691)
Q Consensus 298 p~s~~e~~~~k~~~~k~l~ilGF~~~~~i~~~~~~~~~~~i~p~~~-~~~s~~afsaL~~Al~e~~~vaI~r~v~r~~~~ 376 (691)
+|+++|++.++..+.++|+|+||+++++|+++|+|+++|||+|++. ..+|..+|+||++||.++++|||||||+|.++.
T Consensus 328 ~~~~ee~~~~k~~~~~~i~ilgFv~~~~i~~~~~~~~~~~l~P~~~~~~~s~~afsaL~~al~~~~kvaIar~v~r~~~~ 407 (609)
T 1jey_A 328 ILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIP 407 (609)
T ss_dssp EECHHHHHHTTCCSCSEEEEEEEEEGGGSCGGGCCSCCEEEEECTTTEETHHHHHHHHHHHHHHTTEEEEEEEECSSSCC
T ss_pred CCCHHHHHHHHCCCCCCEEEEEECCHHHCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf 36999999875037883599853446767665614784389548777646099999999999865968999987548999
Q ss_pred CEEEEEEECCCCCC-----CCCCCEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 52799960411377-----8878707982278721026889998878999999998899999999987177999988678
Q 005544 377 SVVVGVLTPNVSEK-----INIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEIL 451 (691)
Q Consensus 377 p~~i~~L~P~~~~~-----~~~~~~l~~v~LPFaeDvR~~~fp~l~~~~~~~~p~~eq~~a~~~lId~mdl~~~~~~e~~ 451 (691)
|.+++|+|+.+.. +..++||++++|||+||||.++||+ ...|+++|+++|++||++|+++ |
T Consensus 408 -p~l~aL~P~~~~~d~~~~q~~~~gl~l~~Lpf~ddvR~~~f~~------~~~~~~~~l~~a~~lI~~m~~~-------~ 473 (609)
T 1jey_A 408 -PYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTE------KIMATPEQVGKMKAIVEKLRFT-------Y 473 (609)
T ss_dssp -CEEEEEEEECCEECTTCCEEECSEEEEEECCCGGGBCCCCCCC------CCCCCHHHHHHHHHHHHHTBCC-------C
T ss_pred -CEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC------CCCCCHHHHHHHHHHHHHCCCC-------C
T ss_conf -7799996764355555776778806999468662135888855------6889999999999999966667-------7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHH-HHHHHHHHHHHH-CCCCCCCCCCCCH
Q ss_conf 99999993469899999874149999999992555530599978999-879999999823-5986588653100
Q 005544 452 QPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLA-ESQSAIDAFCGQ-FVIKENPKLKKST 523 (691)
Q Consensus 452 ~p~~~~NP~lqr~~~~i~~ral~~~~~~p~~~~~l~~~~~p~~~~~~-~~~~~l~~~k~~-f~~~~~~~k~k~~ 523 (691)
+|+.|+||++||||++|+++|++++.|+|+.|++ .|+.+.+. +++++|++|+++ |+++++|.+++.+
T Consensus 474 ~p~~~~np~lq~~~~~i~a~al~~~~~~~~~d~t-----~p~~~~~~~~~~~~~~~~k~~~f~~~~~~~~~~~~ 542 (609)
T 1jey_A 474 RSDSFENPVLQQHFRNLEALALDLMEPEQAVDLT-----LPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKVTK 542 (609)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHTTCSSCCCCCCTT-----SCCHHHHHHHHTTHHHHHHHHHSCSCC--------
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC
T ss_conf 8456799799999999999845889999997755-----69989999999999999998646543461010235
No 3
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=1.00 E-value=1 Score=267.57 Aligned_cols=134 Identities=21% Similarity=0.407 Sum_probs=123.3
Q ss_pred CCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 43478998420011688916689998807899526999999999999997200679987689999999999874420481
Q 005544 550 NSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEP 629 (691)
Q Consensus 550 ~~~~~~~~~~~~~ig~~~pv~dF~~~l~~~~~~~~~~~a~~qm~~~I~~lv~~s~~~~~y~ka~~cl~~~R~~~i~~~e~ 629 (691)
+...++.+. ++.||++|||+||++||++++. .|++|++||+++|++||.+| ++.+|+||++||++||++||.++||
T Consensus 19 ~~~~l~~~~-v~~Ig~~nPv~DFk~lL~~~~~--~~~~A~~qM~~vI~~Ll~~s-~~~~y~KA~ecL~~lR~~~i~~~ep 94 (152)
T 1rw2_A 19 SVSSLAEGS-VTSVGSVNPAENFRVLVKQKKA--SFEEASNQLINHIEQFLDTN-ETPYFMKSIDCIRAFREEAIKFSEE 94 (152)
T ss_dssp CSCCSSSSS-SCSSSSSCTTHHHHHHHHSSSS--CHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHCCCC-CCEECCCCCHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 487752588-8643788937999999976766--59999999999999998366-6232999999999999999852576
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 4799999999999940890457899880972011257568789998888354343589
Q 005544 630 KQFNDVLEKVCKICRKRNFSTFFDFLMSKKLSLISKSEAVDSDITDDEAGSFIVKSQP 687 (691)
Q Consensus 630 ~~~N~fl~~lk~~~~~~~~~~fw~~i~~~~l~lI~~~E~~~s~vt~~ea~~F~~~~~~ 687 (691)
..||+||++||++|+++++++||+.|++++||||+++|++.|+||++||++||..+++
T Consensus 95 ~~yN~Fl~~LK~~l~~~~l~~FW~~Iv~~~lgLI~~~Es~~S~Vt~eeA~~Fl~~~~~ 152 (152)
T 1rw2_A 95 QRFNNFLKALQEKVEIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKFLAPKDK 152 (152)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHTCSSCSSSSSSSCSCCTHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHCCCCC
T ss_conf 8899999999999986109999999998796655186536667999999999704589
No 4
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=1.00 E-value=1 Score=255.85 Aligned_cols=120 Identities=23% Similarity=0.458 Sum_probs=115.2
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 68891668999880789952699999999999999720067998768999999999987442048147999999999999
Q 005544 564 GDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKIC 643 (691)
Q Consensus 564 g~~~pv~dF~~~l~~~~~~~~~~~a~~qm~~~I~~lv~~s~~~~~y~ka~~cl~~~R~~~i~~~e~~~~N~fl~~lk~~~ 643 (691)
|++|||+||++||++++. .|++|++||+++|++||.+| ++.+|+||++||++||++||.++||..||+||++||++|
T Consensus 1 G~~nPv~DFk~ll~~~~~--~~~~A~~qm~~vI~~Ll~~s-~~~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~ 77 (120)
T 1q2z_A 1 GPVNPAENFRVLVKQKKA--SFEEASNQLINHIEQFLDTN-ETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKV 77 (120)
T ss_dssp CCCCHHHHHHHHTSSSCC--TTTHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 998818999999976746--39999999999999998176-623299999999999999985257688999999999999
Q ss_pred HCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 4089045789988097201125756878999888835434358
Q 005544 644 RKRNFSTFFDFLMSKKLSLISKSEAVDSDITDDEAGSFIVKSQ 686 (691)
Q Consensus 644 ~~~~~~~fw~~i~~~~l~lI~~~E~~~s~vt~~ea~~F~~~~~ 686 (691)
+++++++||+.|++++||||+++|++.|+||++||++||..++
T Consensus 78 ~~~~l~~FW~~iv~~~lgLI~~~E~~~S~vt~eeA~~Fl~~~~ 120 (120)
T 1q2z_A 78 EIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKFLAPKD 120 (120)
T ss_dssp HTTSTTHHHHHHHHTTCCSCCSTTSSSCCCCHHHHTTTSCSCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHCCCC
T ss_conf 8630999999999879677757553666799999999866689
No 5
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=137.77 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=101.6
Q ss_pred EEECCCCCHHHHHHHHHHCCC-----CC-----HHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 001168891668999880789-----95-----269999999999999972006799-8768999999999987442048
Q 005544 560 VDKIGDLTPIQDFEAMMSRRD-----CP-----DWVDKAIEDMKNKIFGLLENSNEG-INYPKAVELLVALRKGCILEQE 628 (691)
Q Consensus 560 ~~~ig~~~pv~dF~~~l~~~~-----~~-----~~~~~a~~qm~~~I~~lv~~s~~~-~~y~ka~~cl~~~R~~~i~~~e 628 (691)
...||.++|.+||+.++.+.- .+ .-|.+.+++++++|++|+.++... ..|+||.+.|+.+|..|- +-.
T Consensus 210 ~~~i~~e~PleDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~-fyg 288 (359)
T 3ism_C 210 EATLTKENPLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAG-FYG 288 (359)
T ss_dssp ---------CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH-HHC
T ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-CCC
T ss_conf 4330676857999999986530221466077788899999999999999984689975658999999999986025-358
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCCCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 14799999999999940890457899-880972011257568789998888354343
Q 005544 629 PKQFNDVLEKVCKICRKRNFSTFFDF-LMSKKLSLISKSEAVDSDITDDEAGSFIVK 684 (691)
Q Consensus 629 ~~~~N~fl~~lk~~~~~~~~~~fw~~-i~~~~l~lI~~~E~~~s~vt~~ea~~F~~~ 684 (691)
|-.||+|+-+|++.++.+++.+||.. |++.+||||...+|+.=+--+.---+||.+
T Consensus 289 P~~YNeWIvklrdelL~r~~l~FW~~~iVk~~lGp~~~rdSd~fd~dd~~p~efy~k 345 (359)
T 3ism_C 289 PDDYNSWIFNLRDEVLTKELLDFWRDKMVKMELGPSCARDSDYYDNEDPLPFEFYEK 345 (359)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHTTTTTTCSSCCTTTCTTCCTTSCCCHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCHHHHHH
T ss_conf 851768999999999988899999999998740762133102016798634888873
No 6
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=109.85 Aligned_cols=125 Identities=21% Similarity=0.274 Sum_probs=112.7
Q ss_pred EEECCCCCHHHHHHHHHHCCCCC----------HHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 00116889166899988078995----------269999999999999972006799--876899999999998744204
Q 005544 560 VDKIGDLTPIQDFEAMMSRRDCP----------DWVDKAIEDMKNKIFGLLENSNEG--INYPKAVELLVALRKGCILEQ 627 (691)
Q Consensus 560 ~~~ig~~~pv~dF~~~l~~~~~~----------~~~~~a~~qm~~~I~~lv~~s~~~--~~y~ka~~cl~~~R~~~i~~~ 627 (691)
...||.++|++||+++|.+.... ..|++.++||+++|++|+.++... ..|.||.+.|..+|..| .+.
T Consensus 24 ~~~IGl~~PaeDYk~LL~~~v~~~~ivnd~~~~~~Fq~IaaqaR~VIw~LLF~~~~~~~e~~eKa~ELL~eYR~da-~Fy 102 (359)
T 3ism_C 24 DYTIGLVDPVKDYQKLIETRVQVDEIVDDDVTKENFDRTAAAARDVIWRLLFDEAGTSQSNTEKASQLLEEYRGDA-CFY 102 (359)
T ss_dssp CCCCCSSSHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC-CCC
T ss_conf 6223057838999999999875012467067887899999999999999996378882656999999999998313-557
Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 814799999999999940890457899-8809720112575687899988883543435
Q 005544 628 EPKQFNDVLEKVCKICRKRNFSTFFDF-LMSKKLSLISKSEAVDSDITDDEAGSFIVKS 685 (691)
Q Consensus 628 e~~~~N~fl~~lk~~~~~~~~~~fw~~-i~~~~l~lI~~~E~~~s~vt~~ea~~F~~~~ 685 (691)
.|-.||+|+.+||+.++.+++.+||.. |+.++|||+-..|++-++++++.+.+||..-
T Consensus 103 ~P~eYNEWIvkLRdelLkR~lleFW~dvIVkkQLGPc~srDSdlfd~dd~~p~eFY~~a 161 (359)
T 3ism_C 103 DPTPYNEWIVKLRDEVLKKELLDFWRDVLVKKQLGPCWSRDSDLFDSDDTPPLEFYAHA 161 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHTTTTTTCSSCCTTTCTTCCTTSCCCTGGGCST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHC
T ss_conf 87518899999999999989999999999985237511488754357873269999843
No 7
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=107.48 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=117.1
Q ss_pred CEEEEEEEECCCCCCC------CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 7089999966978667------7157999999999997731783289999974897775332247995738998306999
Q 005544 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (691)
Q Consensus 5 Kea~vflIDvs~sM~~------~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgT~~t~n~l~~e~~~y~nI~v~~~l~~~ 78 (691)
-||||||||+|.||.. +++.++.++..+++.+.-.++.|.||||.|.... ..++.++..-
T Consensus 3 lEAtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~--------------~~vl~plT~D 68 (268)
T 4b4t_W 3 LEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGAN--------------PRVLSTFTAE 68 (268)
T ss_dssp CEEEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTS--------------CEEEEEEESC
T ss_pred CEEEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC--------------CEECCCCCCH
T ss_conf 30699999898787387989769999999999999998627976559999964875--------------3341577505
Q ss_pred CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 98889995249999999864568999999999985468865123999938999999999999454599999997635918
Q 005544 79 DGHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 158 (691)
Q Consensus 79 ~~~~l~~L~~l~~~~~~gd~~daL~va~d~l~~~~~~~k~~~krIvLiTd~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~ 158 (691)
....+..|..+..+. ..++..||-+|...+... ..+...+||+|||+++... ....+..+++.+++.||.
T Consensus 69 ~~~il~aL~~l~~~G-~T~l~~gL~~A~~aLk~~--~~k~~~~rIIlf~ds~~~~-------~~~~l~~lak~lkk~gI~ 138 (268)
T 4b4t_W 69 FGKILAGLHDTQIEG-KLHMATALQIAQLTLKHR--QNKVQHQRIVAFVCSPISD-------SRDELIRLAKTLKKNNVA 138 (268)
T ss_dssp HHHHHHHHTTCCCCS-CCCHHHHHHHHHHHHHTC--SCTTSEEEEEEEECSCCSS-------CHHHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC--CCCCCCEEEEEEECCCCCC-------CHHHHHHHHHHHHHCCCE
T ss_conf 999998764157678-877188999999999852--3677851899998989878-------989999999999986987
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99985035889999840110114889998520798
Q 005544 159 MKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSA 193 (691)
Q Consensus 159 l~vi~i~~~~~~~~~~~~~~~ne~~l~~l~~~~~g 193 (691)
+.+|+||. ++ .|+..|..|++..+|
T Consensus 139 v~vIgFG~---~~-------~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 139 VDIINFGE---IE-------QNTELLDEFIAAVNN 163 (268)
T ss_dssp EEEEEESS---CC-------SSCCHHHHHHHHHCS
T ss_pred EEEEEECC---CC-------CCHHHHHHHHHHHCC
T ss_conf 99999478---86-------546999999998548
No 8
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=96.29 Aligned_cols=161 Identities=16% Similarity=0.231 Sum_probs=113.3
Q ss_pred CEEEEEEEECCCCCCC------CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 7089999966978667------7157999999999997731783289999974897775332247995738998306999
Q 005544 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (691)
Q Consensus 5 Kea~vflIDvs~sM~~------~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgT~~t~n~l~~e~~~y~nI~v~~~l~~~ 78 (691)
+|+++|+||+|.||.. +++.+++++..++..++-.++.|.||||.|+.+.. + ++.|+..-
T Consensus 2 ~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a----------~----~~~plT~d 67 (192)
T 2x5n_A 2 LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSP----------Q----VLSTLTRD 67 (192)
T ss_dssp CEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSC----------C----EEEEEESC
T ss_pred CEEEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC----------E----EECCCCCC
T ss_conf 248999999997666689898999999999999999998469987399999868872----------7----85189899
Q ss_pred CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 98889995249999999864568999999999985468865123999938999999999999454599999997635918
Q 005544 79 DGHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 158 (691)
Q Consensus 79 ~~~~l~~L~~l~~~~~~gd~~daL~va~d~l~~~~~~~k~~~krIvLiTd~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~ 158 (691)
-...+..|.++..+. ..++.+||..|..++.+. ..+...+||++|++++... ...++..+++.+++.||.
T Consensus 68 ~~~i~~~L~~l~~~g-~t~l~~aL~~A~~~l~~~--~~~~~~~riiil~~~~~~~-------~~~~~~~~a~~lk~~gi~ 137 (192)
T 2x5n_A 68 YGKFLSAMHDLPVRG-NAKFGDGIQIAQLALKHR--ENKIQRQRIVAFVGSPIVE-------DEKNLIRLAKRMKKNNVA 137 (192)
T ss_dssp HHHHHHHHTTCCCCS-CCCHHHHHHHHHHHHHTC--SCTTSEEEEEEEECSCCSS-------CHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHC--CCCCCCCEEEEEEECCCCC-------CCHHHHHHHHHHHHCCCE
T ss_conf 999999997188789-860999999999999744--3557786399999789988-------944299999999977988
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC----CEEEEHHH
Q ss_conf 9998503588999984011011488999852079----83753331
Q 005544 159 MKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSS----AKTLFVDS 200 (691)
Q Consensus 159 l~vi~i~~~~~~~~~~~~~~~ne~~l~~l~~~~~----g~~~~~~~ 200 (691)
+.+|++|.. + .|+. |..|++..+ +.+.++..
T Consensus 138 v~~Ig~G~~---~-------~~~~-l~~la~~~n~~~~s~~~~~~~ 172 (192)
T 2x5n_A 138 IDIIHIGEL---Q-------NESA-LQHFIDAANSSDSCHLVSIPP 172 (192)
T ss_dssp EEEEEESCC-------------CH-HHHHHHHHCSTTCCEEEEECC
T ss_pred EEEEEECCC---C-------CCHH-HHHHHHHCCCCCCEEEEEECC
T ss_conf 999995799---7-------4478-999998546899647999268
No 9
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=90.43 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=114.3
Q ss_pred CEEEEEEEECCCCCCC------CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 7089999966978667------7157999999999997731783289999974897775332247995738998306999
Q 005544 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (691)
Q Consensus 5 Kea~vflIDvs~sM~~------~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgT~~t~n~l~~e~~~y~nI~v~~~l~~~ 78 (691)
.-.++|+||+|.||.. .+..++..+..++. ..+.|.||||.|++.. .+..++..
T Consensus 11 ~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~----~~~~~~v~lv~F~~~~---------------~~~~~~~~- 70 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVD----ELDNDKVGMIVFAGDA---------------FTQLPITS- 70 (218)
T ss_dssp CCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHH----TCSSCEEEEEEESSSE---------------EEEEEEES-
T ss_pred CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH----HCCCCEEEEEEECCCC---------------EEECCCCC-
T ss_conf 886899997986766446896799999999999997----3988749999987995---------------48478878-
Q ss_pred CHH-HHHHHHCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 988-89995249999---99986456899999999998546886512399993899999999999945459999999763
Q 005544 79 DGH-LVQSLKHLPQG---TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVA 154 (691)
Q Consensus 79 ~~~-~l~~L~~l~~~---~~~gd~~daL~va~d~l~~~~~~~k~~~krIvLiTd~~~p~~~~~~~~~~~~~~~ia~~l~~ 154 (691)
+.. ....|..+..+ ....++.+||..|.+++.. .....+.|+|||||..... .+...+..++.
T Consensus 71 ~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~----~~~~~~~ivllTDG~~~~~---------~~~~~~~~~~~ 137 (218)
T 3ibs_A 71 DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTP----QEGVGRAIIVITDGENHEG---------GAVEAAKAAAE 137 (218)
T ss_dssp CHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCS----CSSCCEEEEEEECCTTCCS---------CHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH----CCCCCCEEEEECCCCCCCC---------CHHHHHHHHHH
T ss_conf 9999999998638365788997199999999999862----7788868999808898887---------68999999986
Q ss_pred CCCEEEEEEECCCC------CC--------CCCCCHHHHHHHHHHHHHHCCCCEEEEHHH
Q ss_conf 59189998503588------99--------998401101148899985207983753331
Q 005544 155 FGLRMKNIVVRASL------SG--------EPHMRVIIENDNLLNIFSKKSSAKTLFVDS 200 (691)
Q Consensus 155 ~gI~l~vi~i~~~~------~~--------~~~~~~~~~ne~~l~~l~~~~~g~~~~~~~ 200 (691)
.||.+.+|+++.+- .+ .+..-....++..|+.++..++|.++.+.+
T Consensus 138 ~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 138 KGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp TTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHCCCEEEECCC
T ss_conf 698899999658988745306987601769999868628999999999961988998879
No 10
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=1.00 E-value=1 Score=88.55 Aligned_cols=171 Identities=19% Similarity=0.173 Sum_probs=114.6
Q ss_pred CCEEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC---C
Q ss_conf 87089999966978667-7157999999999997731783289999974897775332247995738998306999---9
Q 005544 4 TREALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---D 79 (691)
Q Consensus 4 ~Kea~vflIDvs~sM~~-~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgT~~t~n~l~~e~~~y~nI~v~~~l~~~---~ 79 (691)
.+--++|+||.|.||.. .++.++..+..++.+.-..++.+.||||.|+++. .+..++..+ +
T Consensus 8 ~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~---------------~~~~~l~~~~~~~ 72 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEP---------------KVLMSVLNDNSRD 72 (509)
T ss_dssp SEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSE---------------EEEECTTSGGGGC
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC---------------CEEEECCCCCCCC
T ss_conf 9766999995878666556999999999999986236888669999815888---------------5367426788889
Q ss_pred HH-HHHHHHCCCCCC----CCCCHHHHHHHHHHHHHHHHCCC-------CCCCCEEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 88-899952499999----99864568999999999985468-------8651239999389999999999994545999
Q 005544 80 GH-LVQSLKHLPQGT----CAGDFLDAIVVGVDMLIKKYGET-------YKGKKHLCLITDALCPLKDPDVGTKEDQVST 147 (691)
Q Consensus 80 ~~-~l~~L~~l~~~~----~~gd~~daL~va~d~l~~~~~~~-------k~~~krIvLiTd~~~p~~~~~~~~~~~~~~~ 147 (691)
.+ .++.|.++.... ...+...||..|.+++....... ....+.|+|||||....+. .......
T Consensus 73 ~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-----~~~~~~~ 147 (509)
T 2odp_A 73 MTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG-----SPKTAVD 147 (509)
T ss_dssp HHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-----CTHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC-----CHHHHHH
T ss_conf 99999999746655577889743899999999997521012445665412330699998788756898-----8268999
Q ss_pred HHHH-HH-----HCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEHHHHHHH
Q ss_conf 9999-76-----35918999850358899998401101148899985207983--7533316885
Q 005544 148 IARQ-MV-----AFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAK--TLFVDSTTSL 204 (691)
Q Consensus 148 ia~~-l~-----~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~l~~l~~~~~g~--~~~~~~a~~~ 204 (691)
.+.. +. +.+|.+.+||+|.+ ..+...|+.++...+|. ++.+.+..++
T Consensus 148 ~~~~~~~~~~~~~~~i~i~~iGvG~~----------~~~~~~L~~iA~~~~G~~~~~~~~~~~~l 202 (509)
T 2odp_A 148 HIREILNINQKRNDYLDIYAIGVGKL----------DVDWRELNELGSKKDGERHAFILQDTKAL 202 (509)
T ss_dssp HHHHHTTCCSTTGGGEEEEEEEESSS----------CCCHHHHHHHSCCCTTCCCEEEESSHHHH
T ss_pred HHHHHHHCCCCCCCCEEEEEEECCCC----------CCCHHHHHHHCCCCCCCEEEEEECCHHHH
T ss_conf 99987623434467668999973788----------64688877650688884335894678898
Done!