BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005545
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 15/239 (6%)
Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS 167
K+ + LN ++ +K GE +A+LGP SGKI ++ + +
Sbjct: 11 KKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT-SGKIYFDEKDVTE 69
Query: 168 --SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
R G V Q+ LYPH+TV + +++ LR K REE ++ V L + +
Sbjct: 70 LPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKL 126
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
N P +SGG+++RV+I + ++ P LLLDEP S LD+ + A L+ L +
Sbjct: 127 LNRY---PW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181
Query: 286 G-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNP 343
G T + H + L M D++ V+ EG + G +V Y +V GF L NP
Sbjct: 182 ELGITTVYVTHDQAEAL-AMADRIAVIREGEILQVGTPDEVY-YKPKYKFVGGF-LGNP 237
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 11/170 (6%)
Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
+R G V Q LYPHL+V E +S+ L KK +++ Q V ++L R
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV-LQLAHLLDRKP- 131
Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDST-TAQRIVATLRGLARGGR 288
+ +SGG+R+RV+IG+ ++ PS LLDEP S LD+ Q + R R GR
Sbjct: 132 ------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGF 338
T+I H + + DK+VVL G G+ ++ Y +V GF
Sbjct: 186 TMIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLELYHYPAD-RFVAGF 233
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 11/170 (6%)
Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
+R G V Q LYPHL+V E +S+ L KK +++ Q V ++L R
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV-LQLAHLLDRKP- 131
Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDST-TAQRIVATLRGLARGGR 288
+ +SGG+R+RV+IG+ ++ PS LLDEP S LD+ Q + R R GR
Sbjct: 132 ------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGF 338
T+I H + + DK+VVL G G+ ++ Y +V GF
Sbjct: 186 TMIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLELYHYPAD-RFVAGF 233
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
Query: 165 FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
F R V Q LYPH+TV + +++ LR K+ R+E ++ V LGLT
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTE 131
Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
N P R +SGG+R+RV++G+ ++ P L+DEP S LD+ R+ A L+ L
Sbjct: 132 LLNR---KP--RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 285 RG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNP 343
R G T I H + M D++ V++ G G +V D + +V GF P
Sbjct: 187 RQLGVTTIYVTHDQVEAMT-MGDRIAVMNRGVLQQVGSPDEVYDKPANT-FVAGFIGSPP 244
Query: 344 ADFL 347
+FL
Sbjct: 245 MNFL 248
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 11/170 (6%)
Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
+R G V Q LYPHL+V E +S+ L KK +++ Q V ++L R
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV-LQLAHLLDRKP- 131
Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDST-TAQRIVATLRGLARGGR 288
+ +SGG+R+RV+IG+ ++ PS LLD+P S LD+ Q + R R GR
Sbjct: 132 ------KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGF 338
T+I H + + DK+VVL G G+ ++ Y +V GF
Sbjct: 186 TMIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLELYHYPAD-RFVAGF 233
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 23/200 (11%)
Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQ--- 164
K R +L G+S VK GE ++++G GK+ G++
Sbjct: 12 KVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT-EGKVFLEGKEVDY 70
Query: 165 -----FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME 219
S RK GFV Q L P LT LE + +L++ K ++E E+ E ++ E
Sbjct: 71 TNEKELSLLRNRKLGFVFQFHYLIPELTALENV-IVPMLKMGKP--KKEAKERGEYLLSE 127
Query: 220 LGLTRCRNSVVGGPLFRG---ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
LGL G L R +SGGE++RV+I + + P L DEPT LDS +R+
Sbjct: 128 LGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 277 VATLRGLARGGRTVITTIHQ 296
+ + GG +++ H+
Sbjct: 180 MDIFLKINEGGTSIVMVTHE 199
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 18/223 (8%)
Query: 113 VSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSSLK-- 170
V L+ V+ ++ GE +LGP +G++ ++ R +S+ K
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLI 76
Query: 171 -----RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
RK G V Q LYP+LT E +++ L + K+++EE ++ E V L +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFP-LTNM--KMSKEEIRKRVEEVAKILDIHHV 133
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-A 284
N R +SGG+++RV++ + ++ +PS LLLDEP S LD+ A ++ + +
Sbjct: 134 LNH-----FPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
R G T++ H P+ ++ + D+V VL +G + G+ + D
Sbjct: 189 RLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 16/228 (7%)
Query: 116 LNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFS--SSLKRKT 173
L+ +S V+ GE +LGP SG+I +G+ + S K
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDI 74
Query: 174 GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233
FV Q+ L+PH+ V + L + +R+ K + ++ A + +E L R P
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDPKRVLDTARDLKIEHLLDR-------NP 125
Query: 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT 293
L +SGGE++RV++ + ++ NP LLLDEP S LD T + L L + + +
Sbjct: 126 L--TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183
Query: 294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD--YFGSIGYVPGFN 339
I + M D++ V+ +G I G+ ++ + G + GF
Sbjct: 184 ITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFE 231
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
+L+ ++ +K GE++ ++G +G++ +G + + L+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 78
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
R+ G V QD+VL + ++++ +S A +K+ K+ A I EL N++V
Sbjct: 79 RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 135
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
G G+SGG+R+R++I + ++ NP L+ DE TS LD + I+ + + + GRTV
Sbjct: 136 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 193
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
I H+ S+ + D+++V+ +G + G+ +++
Sbjct: 194 IIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
+L+ ++ +K GE++ ++G +G++ +G + + L+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 78
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
R+ G V QD+VL + ++++ +S A +K+ K+ A I EL N++V
Sbjct: 79 RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 135
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
G G+SGG+R+R++I + ++ NP L+ DE TS LD + I+ + + + GRTV
Sbjct: 136 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 193
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
I H+ S+ + D+++V+ +G + G+ +++
Sbjct: 194 IIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
+L+ ++ +K GE++ ++G +G++ +G + + L+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 76
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
R+ G V QD+VL + ++++ +S A +K+ K+ A I EL N++V
Sbjct: 77 RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 133
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
G G+SGG+R+R++I + ++ NP L+ DE TS LD + I+ + + + GRTV
Sbjct: 134 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 191
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
I H+ S+ + D+++V+ +G + G+ +++
Sbjct: 192 IIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
+L+ ++ +K GE++ ++G +G++ +G + + L+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 82
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
R+ G V QD+VL + ++++ +S A +K+ K+ A I EL N++V
Sbjct: 83 RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 139
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
G G+SGG+R+R++I + ++ NP L+ DE TS LD + I+ + + + GRTV
Sbjct: 140 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 197
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
I H+ S+ + D+++V+ +G + G+ +++
Sbjct: 198 IIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 119/257 (46%), Gaps = 19/257 (7%)
Query: 113 VSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS--SLK 170
V ++GVS VK GE +A+LGP SG+I ++ +
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT-SGEIYFDDVLVNDIPPKY 74
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI-EQAEMVIMELGLTRCRNSV 229
R+ G V Q+ LYPH+TV E +++ R K E+++ E A ++++ L R
Sbjct: 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ- 133
Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GR 288
+SGG+++RV++ + ++ P LL DEP S LD+ + A ++ L + G
Sbjct: 134 --------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI 185
Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLL 348
T + H + + M ++ V ++G + G +V D ++ +V F P +FL
Sbjct: 186 TSVYVTHDQAEAMT-MASRIAVFNQGKLVQYGTPDEVYDSPKNM-FVASFIGNPPTNFLR 243
Query: 349 DLANGIAPD---VKQDD 362
D + + +K+DD
Sbjct: 244 DFSVSVENKQTILKRDD 260
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 15/222 (6%)
Query: 112 TVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS--- 168
++ VL G++ ++ GE++ ++GP G+I +G +
Sbjct: 15 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLKAKDTN 73
Query: 169 ---LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
++ + G V Q L+PH+TVL ++ A + +K RE+ +A ++ ++GL
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK--VRKWPREKAEAKAMELLDKVGL--- 128
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
++ P +SGG+ +RV+I + + + P +L DEPTS LD +++ ++ LA
Sbjct: 129 KDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
G T++ H+ + D+V+ + G I G+ + D
Sbjct: 187 EGMTMVVVTHE-MGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 113 VSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSSLK-- 170
V L+ V+ ++ GE +LGP +G++ ++ R +S+ K
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLI 76
Query: 171 -----RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
RK G V Q LYP+LT E +++ L + K+++EE ++ E V L +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFP-LTNM--KMSKEEIRKRVEEVAKILDIHHV 133
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-A 284
N R +SG +++RV++ + ++ +PS LLLDEP S LD+ A ++ + +
Sbjct: 134 LNH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
R G T++ H P+ ++ + D+V VL +G + G+ + D
Sbjct: 189 RLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 15/222 (6%)
Query: 112 TVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS--- 168
++ VL G++ ++ GE++ ++GP G+I +G +
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLKAKDTN 94
Query: 169 ---LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
++ + G V Q L+PH+TVL ++ A + +K RE+ +A ++ ++GL
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK--VRKWPREKAEAKAMELLDKVGL--- 149
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
++ P +SGG+ +RV+I + + + P +L DEPTS LD +++ ++ LA
Sbjct: 150 KDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
G T++ H+ + D+V+ + G I G+ + D
Sbjct: 208 EGMTMVVVTHE-MGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
+L+ ++ +K GE++ ++G +G++ +G + + L+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 82
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
R+ G V QD+VL + ++++ +S A +K+ K+ A I EL N++V
Sbjct: 83 RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 139
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
G G+SGG+R+R++I + ++ NP L+ D+ TS LD + I+ + + + GRTV
Sbjct: 140 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTV 197
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
I H+ S+ + D+++V+ +G + G+ +++
Sbjct: 198 IIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 165 FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
F +R V Q LYPH TV + +++ LR K+ ++E ++ V LGLT
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGLTE 134
Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
N P R +SGG+R+RV++G+ ++ P L DEP S LD+ + A L+ L
Sbjct: 135 LLNR---KP--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 285 RG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIG-YVPGFNLLN 342
R G T I H D++ V ++G G +V Y+ + +V GF
Sbjct: 190 RQLGVTTIYVTHD-QVEAXTXGDRIAVXNKGELQQVGTPDEV--YYKPVNTFVAGFIGSP 246
Query: 343 PADFL 347
P +FL
Sbjct: 247 PXNFL 251
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 109/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
+L+ ++ +K GE++ ++G +G++ +G + + L+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 76
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
R+ G V QD+VL + ++++ +S A +K+ K+ A I EL N++V
Sbjct: 77 RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 133
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
G G+SGG+R+R++I + ++ NP L+ DE TS LD + I+ + + + GRTV
Sbjct: 134 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 191
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
I + S+ + D+++V+ +G + G+ +++
Sbjct: 192 IIIAARLST--VKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 109/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
+L+ ++ +K GE++ ++G +G++ +G + + L+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 82
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
R+ G V QD+VL + ++++ +S A +K+ K+ A I EL N++V
Sbjct: 83 RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 139
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
G G+SGG+R+R++I + ++ NP L+ DE TS LD + I+ + + + GRTV
Sbjct: 140 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 197
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
I + S+ + D+++V+ +G + G+ +++
Sbjct: 198 IIIAARLST--VKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 155 SGKITYNGRQ----FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI 210
SG+I +G + SL+ + G V QD++L+ +T+ LL P T EE +
Sbjct: 395 SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-----DTVKENILLGRPTA-TDEEVV 448
Query: 211 EQAEMVIME---LGLTRCRNSVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEPT 265
E A+M + L + ++ VG RG+ SGG+++R+SI + L NP L+LDE T
Sbjct: 449 EAAKMANAHDFIMNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
S LD + I L L++ RT + H+ S+ + DK+VV+ G + +G
Sbjct: 506 SALDLESESIIQEALDVLSK-DRTTLIVAHRLSTITHA--DKIVVIENGHIVETG 557
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 24/230 (10%)
Query: 113 VSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS----S 168
+ +L G+S V+PG+ LA++GP G+I +G + +
Sbjct: 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-LGGEIFIDGSEIKTLNPEH 1150
Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMELGLT 223
+ + V+Q+ L+ ++ E + Y P +T + E A + I EL
Sbjct: 1151 TRSQIAIVSQEPTLF-DCSIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIAEL--P 1204
Query: 224 RCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
+ VG RG +SGG+++R++I + ++ NP LLLDE TS LD T ++++V
Sbjct: 1205 EGFETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEKVVQEAL 1260
Query: 282 GLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGS 331
AR GRT I H+ ++ + D + V+S G+ I G Q+M G+
Sbjct: 1261 DRAREGRTCIVIAHRLNTVMNA--DCIAVVSNGTIIEKGTHTQLMSEKGA 1308
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 22/217 (10%)
Query: 113 VSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNG---RQFS-SS 168
V +L G++ V G+ +A++G GKIT +G R +
Sbjct: 431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-LKGKITIDGVDVRDINLEF 489
Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL---GLTRC 225
L++ V+Q+ L+ + T+ E +S + +TREE + +M E L
Sbjct: 490 LRKNVAVVSQEPALF-NCTIEENISLG-----KEGITREEMVAACKMANAEKFIKTLPNG 543
Query: 226 RNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
N++VG RG +SGG+++R++I + ++ NP LLLDE TS LD+ + + IV
Sbjct: 544 YNTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-EGIVQQALDK 599
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
A GRT I H+ S+ R D ++ G + G
Sbjct: 600 AAKGRTTIIIAHRLST--IRNADLIISCKNGQVVEVG 634
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 13/215 (6%)
Query: 114 SVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFS--SSLKR 171
+ +N ++ +K GE L +LGP G+I + R + R
Sbjct: 26 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDVTYLPPKDR 84
Query: 172 KTGFVTQDDVLYPHLTVLETLSYA-ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
V Q ++PH+TV E +++ + + PK + AE++ +E L R
Sbjct: 85 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-- 142
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
+SGG+R+RV++ + ++V P LL+DEP S LD+ + A ++ L + +
Sbjct: 143 -------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
+ M D++ V++ G + G +V
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 13/215 (6%)
Query: 114 SVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFS--SSLKR 171
+ +N ++ +K GE L +LGP G+I + R + R
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDVTYLPPKDR 83
Query: 172 KTGFVTQDDVLYPHLTVLETLSYA-ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
V Q ++PH+TV E +++ + + PK + AE++ +E L R
Sbjct: 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-- 141
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
+SGG+R+RV++ + ++V P LL+DEP S LD+ + A ++ L + +
Sbjct: 142 -------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
+ M D++ V++ G + G +V
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 18/185 (9%)
Query: 155 SGKITYNG---RQFS-SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI 210
SG I +G R + ++L+R V+Q+ L+ T+ ++YAA + TRE+ I
Sbjct: 397 SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAA----EGEYTREQ-I 450
Query: 211 EQA--EMVIMEL--GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
EQA + ME + + ++V+G +SGG+R+RV+I + +L + L+LDE TS
Sbjct: 451 EQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATS 509
Query: 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
LD+ + + I A L L + +TV+ H+ S+ D+++V+ EG I GR A ++
Sbjct: 510 ALDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQADEILVVDEGEIIERGRHADLL 566
Query: 327 DYFGS 331
G+
Sbjct: 567 AQDGA 571
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 6/221 (2%)
Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS-S 168
TRT+ LN VS V G++ ++G G + +G++ ++ S
Sbjct: 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLS 73
Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
T Q +++ H +L + + + LP +L K E V L L +
Sbjct: 74 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 133
Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-G 287
P +SGG+++RV+I + + NP LL DE TS LD T + I+ L+ + R G
Sbjct: 134 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
T++ H+ + R+ D V V+S G I ++V +
Sbjct: 192 LTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSEVFSH 231
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 18/181 (9%)
Query: 155 SGKITYNG---RQFSSS-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREE-- 208
SG I+ +G RQ + L+ K G V+Q+ +L+ ++ E ++Y A P +T EE
Sbjct: 398 SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQ 454
Query: 209 -KIEQAEMVIMELGLTRCRNSVVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPT 265
E A V + N+VVG G L +SGG+++R++I + +L NP LLLDE T
Sbjct: 455 RVAEVANAVAFIRNFPQGFNTVVGEKGVL---LSGGQKQRIAIARALLKNPKILLLDEAT 511
Query: 266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
S LD+ + L L GRTV+ H+ S+ + + V VL +G G+ ++
Sbjct: 512 SALDAENEYLVQEALDRLM-DGRTVLVIAHRLST--IKNANMVAVLDQGKITEYGKHEEL 568
Query: 326 M 326
+
Sbjct: 569 L 569
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 12/210 (5%)
Query: 116 LNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFS----SSLKR 171
L VS V PG+ LA++GP SG I +G+ S +SL+
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS-SGCIRIDGQDISQVTQASLRS 128
Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
G V QD VL+ T+ + + Y + ++ E + A + + + VG
Sbjct: 129 HIGVVPQDTVLFND-TIADNIRYGRVTAGNDEV--EAAAQAAGIHDAIMAFPEGYRTQVG 185
Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
+ +SGGE++RV+I + +L P +LLDE TS LD++ + I A+L + RT I
Sbjct: 186 ERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTI 243
Query: 292 TTIHQPSSRLYRMFDKVVVLSEGSPIYSGR 321
H+ S+ + D+++V+ +G + GR
Sbjct: 244 VVAHRLSTVVN--ADQILVIKDGCIVERGR 271
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 18/181 (9%)
Query: 155 SGKITYNG---RQFSSS-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREE-- 208
SG I+ +G RQ + L+ K G V+Q+ +L+ ++ E ++Y A P +T EE
Sbjct: 429 SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQ 485
Query: 209 -KIEQAEMVIMELGLTRCRNSVVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPT 265
E A V + N+VVG G L +SGG+++R++I + +L NP LLLDE T
Sbjct: 486 RVAEVANAVAFIRNFPQGFNTVVGEKGVL---LSGGQKQRIAIARALLKNPKILLLDEAT 542
Query: 266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
S LD+ + L L GRTV+ H S+ + + V VL +G G+ ++
Sbjct: 543 SALDAENEYLVQEALDRLM-DGRTVLVIAHHLST--IKNANMVAVLDQGKITEYGKHEEL 599
Query: 326 M 326
+
Sbjct: 600 L 600
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 12/218 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS----SLK 170
VL+GV+ VKPG L+A+LG G++ + + L+
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE-RGRVEVDELDVRTVKLKDLR 416
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
V Q+ VL+ T+ E L + ++ KI Q I+ L
Sbjct: 417 GHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER 475
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
GG R SGG+++R+SI + ++ P L+LD+ TS +D T +RI+ L+ +G T
Sbjct: 476 GG---RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTF 532
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
I T P++ L DK++VL EG G +++++
Sbjct: 533 IITQKIPTALLA---DKILVLHEGKVAGFGTHKELLEH 567
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 6/221 (2%)
Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS-S 168
TRT+ LN VS V G++ ++G G + +G++ ++ S
Sbjct: 38 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLS 96
Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
T Q +++ H +L + + + LP +L K E V L L +
Sbjct: 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-G 287
P +SGG+++RV+I + + NP LL D+ TS LD T + I+ L+ + R G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
T++ H+ + R+ D V V+S G I ++V +
Sbjct: 215 LTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSEVFSH 254
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 6/221 (2%)
Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS-S 168
TRT+ LN VS V G++ ++G G + +G++ ++ S
Sbjct: 38 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLS 96
Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
T Q ++ H +L + + + LP +L K E V L L +
Sbjct: 97 ESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-G 287
P +SGG+++RV+I + + NP LL D+ TS LD T + I+ L+ + R G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
T++ H+ + R+ D V V+S G I ++V +
Sbjct: 215 LTILLITHEXDV-VKRICDCVAVISNGELIEQDTVSEVFSH 254
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 20/216 (9%)
Query: 111 RTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS--- 167
+ V +L G++ VK G+ +A++G G ++ +G+ +
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVG-NSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 168 -SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEK-IEQAEMVIMELGLTRC 225
L+ G V+Q+ VL+ T+ E + Y R + EK +++A + L
Sbjct: 460 RYLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFIMKLPHQ 515
Query: 226 RNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
+++VG RG +SGG+++R++I + ++ NP LLLDE TS LD T ++ +V
Sbjct: 516 FDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEAVVQAALDK 571
Query: 284 ARGGRTVITTIHQPSS----RLYRMFDKVVVLSEGS 315
AR GRT I H+ S+ + FD V++ +G+
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 17/228 (7%)
Query: 107 NKQTR-TVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQF 165
N TR ++ VL G+S VK G+ LA++G +G + +G++
Sbjct: 1039 NYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-MAGSVFLDGKEI 1097
Query: 166 SSS----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMEL 220
L+ + G V+Q+ +L+ ++ E ++Y R+ ++ EE + A E I +
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRV---VSYEEIVRAAKEANIHQF 1153
Query: 221 --GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
L N+ VG + +SGG+++R++I + ++ P LLLDE TS LD T ++++V
Sbjct: 1154 IDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQ 1211
Query: 279 TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
AR GRT I H+ S+ + D +VV+ G G Q++
Sbjct: 1212 EALDKAREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 20/216 (9%)
Query: 111 RTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS--- 167
+ V +L G++ VK G+ +A++G G ++ +G+ +
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVG-NSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 168 -SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEK-IEQAEMVIMELGLTRC 225
L+ G V+Q+ VL+ T+ E + Y R + EK +++A + L
Sbjct: 460 RYLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFIMKLPHQ 515
Query: 226 RNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
+++VG RG +SGG+++R++I + ++ NP LLLDE TS LD T ++ +V
Sbjct: 516 FDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEAVVQAALDK 571
Query: 284 ARGGRTVITTIHQPSS----RLYRMFDKVVVLSEGS 315
AR GRT I H+ S+ + FD V++ +G+
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 17/228 (7%)
Query: 107 NKQTR-TVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQF 165
N TR ++ VL G+S VK G+ LA++G +G + +G++
Sbjct: 1039 NYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-MAGSVFLDGKEI 1097
Query: 166 SSS----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMEL 220
L+ + G V+Q+ +L+ ++ E ++Y R+ ++ EE + A E I +
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRV---VSYEEIVRAAKEANIHQF 1153
Query: 221 --GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
L N+ VG + +SGG+++R++I + ++ P LLLDE TS LD T ++++V
Sbjct: 1154 IDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQ 1211
Query: 279 TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
AR GRT I H+ S+ + D +VV+ G G Q++
Sbjct: 1212 EALDKAREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 9/154 (5%)
Query: 164 QFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMELGL 222
+ + + K GFV Q L P LT LE + + + ++ EE+ ++A E + M
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
R N P +SGG+++RV+I + + NP +L D+PT LDS T ++I+ L+
Sbjct: 136 ERFANH---KP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 283 L-ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315
L G+TV+ H + + R ++++ L +G
Sbjct: 191 LNEEDGKTVVVVTHDIN--VARFGERIIYLKDGE 222
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS----SLK 170
+L +S +P ++A GP +G+IT +G+ + + +
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISLENWR 75
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC----- 225
+ GFV+QD + T+ E L+Y L T E+ + +++L R
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQ-----VLDLAFARSFVENM 125
Query: 226 ---RNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
N+ VG RG ISGG+R+R++I + L NP L+LDE T+ LDS + + L
Sbjct: 126 PDQLNTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 281 RGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR 321
L + GRT + H+ S+ + DK+ + +G SG+
Sbjct: 183 DSLMK-GRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGK 220
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 9/154 (5%)
Query: 164 QFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMELGL 222
+ + + K GFV Q L P LT LE + + + ++ EE+ ++A E + M
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
R N P +SGG+++RV+I + + NP +L D+PT LDS T ++I+ L+
Sbjct: 136 ERFANH---KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 283 L-ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315
L G+TV+ H + + R ++++ L +G
Sbjct: 191 LNEEDGKTVVVVTHDIN--VARFGERIIYLKDGE 222
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 16/227 (7%)
Query: 116 LNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS--SLKRKT 173
+ GVS ++ GE++ +LGP G + G++ + KR
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRVTDLPPQKRNV 89
Query: 174 GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGG 232
G V Q+ L+ H+TV + +S+ RE+++ + EM L R R
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFG---------LREKRVPKDEMDARVRELLRFMRLESYAN 140
Query: 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGGRTVI 291
+SGG+++RV++ + + P LL DEP + +D+ + + +R + G T +
Sbjct: 141 RFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSV 200
Query: 292 TTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGF 338
H L + D+V+VL EG+ G +V + G++ +V F
Sbjct: 201 FVTHDQEEAL-EVADRVLVLHEGNVEQFGTPEEVYEKPGTL-FVASF 245
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
L+ + V Q L+ H+TVLE + A + L L++ + E+A + ++G+ +
Sbjct: 91 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDARERALKYLAKVGI----DE 144
Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR 288
G +SGG+++RVSI + + + P LL DEPTS LD ++ ++ LA G+
Sbjct: 145 RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGK 204
Query: 289 TVITTIHQ 296
T++ H+
Sbjct: 205 TMVVVTHE 212
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 12/172 (6%)
Query: 156 GKITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA 213
G++ NG + +R GFV QD L+PHL+V ++Y + + R E+ +
Sbjct: 53 GEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL-----RNVERVERDRRV 107
Query: 214 EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
+ +LG+ + +SGGER+RV++ + +++ P LLLDEP S +D T
Sbjct: 108 REMAEKLGIAHLLDRKPAR-----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162
Query: 274 QRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
++ LR + R I + + D+V V+ G + G+ ++
Sbjct: 163 GVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNS 228
+ K GFV Q L P LT LE + + + + EE+ ++A + L R N
Sbjct: 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANH 141
Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGG 287
+SGG+++RV+I + + NP +L DEPT LDS T ++I L+ L G
Sbjct: 142 KPNQ-----LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGS 315
+TV+ H + + R ++++ L +G
Sbjct: 197 KTVVVVTHDIN--VARFGERIIYLKDGE 222
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 12/220 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNG---RQFS-SSLK 170
VL ++ +KPG+ +A++GP G+I +G R+ SSL+
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD-RGQILVDGIDIRKIKRSSLR 428
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
G V QD +L+ TV E L Y +++ K+ ++ I L
Sbjct: 429 SSIGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
G +S G+R+ ++I + L NP L+LDE TS +D+ T + I A + L G+T
Sbjct: 488 NG---EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTS 543
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
I H+ ++ + D ++VL +G + G+ +++ G
Sbjct: 544 IIIAHRLNT--IKNADLIIVLRDGEIVEMGKHDELIQKRG 581
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 98/184 (53%), Gaps = 20/184 (10%)
Query: 156 GKITYNG---RQFS-SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIE 211
G+I +G R+++ +SL+ + V+Q+ L+ TV ++YA ++ +RE+ E
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR----TEQYSREQIEE 452
Query: 212 QAEMVIMELGLTRCRN---SVVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
A M + + N +V+G G L +SGG+R+R++I + +L + L+LDE TS
Sbjct: 453 AARMAYAMDFINKMDNGLDTVIGENGVL---LSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
LD+ + + I A L L + RT + H+ S+ D++VV+ +G + G ++
Sbjct: 510 ALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEKADEIVVVEDGVIVERGTHNDLL 566
Query: 327 DYFG 330
++ G
Sbjct: 567 EHRG 570
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 155 SGKITYNG-RQFSSSLKRKTGFVTQ--DDVLYPHLTVLETLSYAALLRLPKKLTREEKIE 211
SG + Y+G R+ ++R G Q +D + V + +++A P + +
Sbjct: 63 SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDR--DPVPLV 119
Query: 212 QAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD-- 269
+ M + L ++ V P F +SGGE++RV+I ++ P L+LDEP GLD
Sbjct: 120 KKAMEFVGLDFDSFKDRV---PFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 174
Query: 270 -STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
T RIV + L G+TVI H + + + D+VVVL +G ++ G + ++
Sbjct: 175 GKTDLLRIVEKWKTL---GKTVILISHDIETVINHV-DRVVVLEKGKKVFDGTRMEFLEK 230
Query: 329 F 329
+
Sbjct: 231 Y 231
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 155 SGKITYNG-RQFSSSLKRKTGFVTQ--DDVLYPHLTVLETLSYAALLRLPKKLTREEKIE 211
SG + Y+G R+ ++R G Q +D + V + +++A P + +
Sbjct: 61 SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDR--DPVPLV 117
Query: 212 QAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD-- 269
+ M + L ++ V P F +SGGE++RV+I ++ P L+LDEP GLD
Sbjct: 118 KKAMEFVGLDFDSFKDRV---PFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172
Query: 270 -STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
T RIV + L G+TVI H + + + D+VVVL +G ++ G + ++
Sbjct: 173 GKTDLLRIVEKWKTL---GKTVILISHDIETVINHV-DRVVVLEKGKKVFDGTRMEFLEK 228
Query: 329 F 329
+
Sbjct: 229 Y 229
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 97/184 (52%), Gaps = 20/184 (10%)
Query: 156 GKITYNG---RQFS-SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIE 211
G I +G R+++ +SL+ + V+Q+ L+ TV ++YA ++ +RE+ E
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR----TEEYSREQIEE 452
Query: 212 QAEMVIMELGLTRCRN---SVVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
A M + + N +++G G L +SGG+R+R++I + +L + L+LDE TS
Sbjct: 453 AARMAYAMDFINKMDNGLDTIIGENGVL---LSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
LD+ + + I A L L + RT + H+ S+ D++VV+ +G + G ++++
Sbjct: 510 ALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHSELL 566
Query: 327 DYFG 330
G
Sbjct: 567 AQHG 570
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 23/221 (10%)
Query: 104 GEPNKQTRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGR 163
G +K + VLN +S + PGE+L ++G SG+I+ +G+
Sbjct: 8 GHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGK 66
Query: 164 Q-FSSSL-----KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVI 217
FS + +R+ G++ Q+ VL+PHLTV ++Y L K T +E+ ++ E ++
Sbjct: 67 TIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQER-QRIEAML 123
Query: 218 MELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI- 276
G+ S + G +SGG+++R ++ + + +P +LLDEP S LD ++I
Sbjct: 124 ELTGI-----SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIR 178
Query: 277 ---VATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
+A LR G++ + H L + D++ V+ +G
Sbjct: 179 EDMIAALRA---NGKSAVFVSHDREEAL-QYADRIAVMKQG 215
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
+S++ G V QD +L+ T+ + Y L +++ + K A++ L +
Sbjct: 89 NSIRSIIGIVPQDTILFNE-TIKYNILYGKLDATDEEVIKATK--SAQLYDFIEALPKKW 145
Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA---QRIVATLRGL 283
+++VG + +SGGER+R++I + +L +P ++ DE TS LDS T Q+ V L
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL--- 201
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
R RT+I H+ S+ + +++L++G + G ++ G
Sbjct: 202 -RKNRTLIIIAHRLST--ISSAESIILLNKGKIVEKGTHKDLLKLNG 245
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 115/281 (40%), Gaps = 51/281 (18%)
Query: 68 FSILRESLHPVTLK----FEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMV 123
S L SL P+ +K F+DV+++ H PN V VL G++ +
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNH-------------PN-----VQVLQGLTFTL 42
Query: 124 KPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGR---QFSSS-LKRKTGFVTQD 179
PG++ A++GP GK+ +G Q+ L + V Q+
Sbjct: 43 YPGKVTALVGPNGSGKSTVAALLQNLYQPT-GGKVLLDGEPLVQYDHHYLHTQVAAVGQE 101
Query: 180 DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG-------- 231
+L+ + E ++Y LTR +E+ V ME G + + G
Sbjct: 102 PLLFGR-SFRENIAYG--------LTRTPTMEEITAVAMESG---AHDFISGFPQGYDTE 149
Query: 232 -GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL-RGLARGGRT 289
G +SGG+R+ V++ + ++ P L+LD+ TS LD+ R+ L RT
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRT 209
Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
V+ HQ S L ++ L EGS G Q+M+ G
Sbjct: 210 VLLITHQLS--LAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 22/220 (10%)
Query: 116 LNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS------L 169
L G++ +K GE+ A+LG SG+I ++ + S L
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS-SGRILFDNKPIDYSRKGIMKL 82
Query: 170 KRKTGFVTQD-DVLYPHLTVLETLSYAAL-LRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
+ G V QD D +V + +S+ A+ ++LP+ R+ + + + G+ ++
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRK----RVDNALKRTGIEHLKD 138
Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG- 286
+S G++KRV+I +++ P L+LDEPT+GLD I+ L + +
Sbjct: 139 KPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL 193
Query: 287 GRTVITTIHQPS-SRLYRMFDKVVVLSEGSPIYSGRAAQV 325
G T+I H LY D V V+ EG I G +V
Sbjct: 194 GITIIIATHDIDIVPLY--CDNVFVMKEGRVILQGNPKEV 231
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 155 SGKITYNGRQFSSS-----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEK 209
GKI +NG+ ++ + V + ++P LTV E L A R K+ + +
Sbjct: 60 KGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRD- 118
Query: 210 IEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
E + + R +GG L SGGE++ ++IG+ + P L DEP+ GL
Sbjct: 119 ---LEWIFSLFPRLKERLKQLGGTL----SGGEQQXLAIGRALXSRPKLLXXDEPSLGLA 171
Query: 270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
+ ++ + + G T I + Q + ++ VL G + G+A++++D
Sbjct: 172 PILVSEVFEVIQKINQEG-TTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 99/219 (45%), Gaps = 13/219 (5%)
Query: 114 SVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS---LK 170
+L G+S ++ GE+ ++GP SG +T G+ ++
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNVVEEPHEVR 87
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
+ ++ ++ Y ++ +E L + A EE +E+A I LG + ++ V
Sbjct: 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-TEIAGLG-EKIKDRV- 144
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
S G +++ I + ++VNP +LDEPTSGLD A+ + L+ ++ G T+
Sbjct: 145 -----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF 329
+ + H + + D++ ++ G+ + +G ++ + +
Sbjct: 200 LVSSHNMLEVEF-LCDRIALIHNGTIVETGTVEELKERY 237
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 113/281 (40%), Gaps = 51/281 (18%)
Query: 68 FSILRESLHPVTLK----FEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMV 123
S L SL P+ +K F+DV+++ H PN V VL G++ +
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNH-------------PN-----VQVLQGLTFTL 42
Query: 124 KPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGR---QFSSS-LKRKTGFVTQD 179
PG++ A++GP GK+ +G Q+ L + V Q+
Sbjct: 43 YPGKVTALVGPNGSGKSTVAALLQNLYQPT-GGKVLLDGEPLVQYDHHYLHTQVAAVGQE 101
Query: 180 DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG-------- 231
+L+ + E ++Y LTR +E+ V ME G + + G
Sbjct: 102 PLLFGR-SFRENIAYG--------LTRTPTMEEITAVAMESG---AHDFISGFPQGYDTE 149
Query: 232 -GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL-RGLARGGRT 289
G +SGG+R+ V++ + ++ P L+LD TS LD+ R+ L RT
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT 209
Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
V+ Q S L ++ L EGS G Q+M+ G
Sbjct: 210 VLLITQQLS--LAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 93/217 (42%), Gaps = 17/217 (7%)
Query: 114 SVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFS-GKITYNGR---QFSSSL 169
++L GV+ +V GE+ A++GP G+I +G + S
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76
Query: 170 KRKTGFVT--QDDVLYPHLTVLETLSYAALLRLPKKLTREEKI-EQAEMVIMELGLTRCR 226
+ + G Q V P +T+ L A L KL RE + E V L L
Sbjct: 77 RARKGLFLAFQYPVEVPGVTIANFLRLA----LQAKLGREVGVAEFWTKVKKALELLDWD 132
Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
S + L G SGGE+KR I Q +++ P+ +LDE SGLD A ++VA RG
Sbjct: 133 ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD-IDALKVVARGVNAMRG 191
Query: 287 ---GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
G VIT H Y DKV V+ +G + +G
Sbjct: 192 PNFGALVIT--HYQRILNYIQPDKVHVMMDGRVVATG 226
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%)
Query: 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ 296
G SGGE+KR I Q ++ P +LDE SGLD + + + L G R+ I H
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 204
Query: 297 PSSRLYRMFDKVVVLSEGSPIYSG 320
Y D V VL +G + SG
Sbjct: 205 QRILDYIKPDYVHVLYQGRIVKSG 228
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 207 EEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
EEKI A + + E LTR N G SGGE+KR I Q ++ P +LDE S
Sbjct: 144 EEKI--ALLKMPEDLLTRSVNV--------GFSGGEKKRNDILQMAVLEPELCILDESDS 193
Query: 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
GLD + + + L G R+ I H Y D V VL +G + SG
Sbjct: 194 GLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITT 293
F +SGG+R+ + I + + +LLDEPTS LD +++ L LA+ TV+ T
Sbjct: 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185
Query: 294 IHQPS 298
HQP+
Sbjct: 186 THQPN 190
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 200 LPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCL 259
+PK+ EE +E+A ++ L L+ + G +SGG+ K V IG+ ++ NP +
Sbjct: 124 IPKE---EEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMI 175
Query: 260 LLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS 319
++DEP +G+ A I + L G T + H+ L D + V+ G I
Sbjct: 176 VMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFNGQIIAE 234
Query: 320 GRAAQ 324
GR +
Sbjct: 235 GRGEE 239
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 200 LPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCL 259
+PK+ EE +E+A ++ L L+ + G +SGG+ K V IG+ ++ NP +
Sbjct: 124 IPKE---EEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMI 175
Query: 260 LLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS 319
++DEP +G+ A I + L G T + H+ L D + V+ G I
Sbjct: 176 VMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFNGQIIAE 234
Query: 320 GRAAQ 324
GR +
Sbjct: 235 GRGEE 239
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 200 LPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCL 259
+PK+ EE +E+A ++ L L+ + G +SGG+ K V IG+ ++ NP +
Sbjct: 124 IPKE---EEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMI 175
Query: 260 LLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS 319
++D+P +G+ A I + L G T + H+ L D + V+ G I
Sbjct: 176 VMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFNGQIIAE 234
Query: 320 GRAAQ 324
GR +
Sbjct: 235 GRGEE 239
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 112/281 (39%), Gaps = 51/281 (18%)
Query: 68 FSILRESLHPVTLK----FEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMV 123
S L SL P+ +K F+DV+++ H PN V VL G++ +
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNH-------------PN-----VQVLQGLTFTL 42
Query: 124 KPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGR---QFSSS-LKRKTGFVTQD 179
PG++ A++GP GK+ +G Q+ L + V Q+
Sbjct: 43 YPGKVTALVGPNGSGKSTVAALLQNLYQPT-GGKVLLDGEPLVQYDHHYLHTQVAAVGQE 101
Query: 180 DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG-------- 231
+L+ + E ++Y LTR +E+ V ME G + + G
Sbjct: 102 PLLFGR-SFRENIAYG--------LTRTPTMEEITAVAMESG---AHDFISGFPQGYDTE 149
Query: 232 -GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL-RGLARGGRT 289
G ++ G+R+ V++ + ++ P L+LD TS LD+ R+ L RT
Sbjct: 150 VGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT 209
Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
V+ Q S L ++ L EGS G Q+M+ G
Sbjct: 210 VLLITQQLS--LAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 235 FRGISGGERKRVSIGQEMLV------NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR 288
+R +SGGE++RV + + + P L LDEPTS LD Q + LR L R
Sbjct: 139 YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP 198
Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
+ + + D++++L++G + G +V++
Sbjct: 199 LAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297
+SGG ++RV I +L++P L+LDEPTS LD T I+ L+ L + + + +
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHD 214
Query: 298 SSRLYRMFDKVVVLSEGS 315
+ + DKV V+ G+
Sbjct: 215 IAVAAELADKVAVIYGGN 232
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGR-- 163
PN+ V VL G++ ++PGE+ A++GP G++ +G+
Sbjct: 25 PNR--PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT-GGQLLLDGKPL 81
Query: 164 -QFSSS-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG 221
Q+ L R+ V Q+ ++ ++ E ++Y L +K T EE I
Sbjct: 82 PQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYG----LTQKPTMEE--------ITAAA 128
Query: 222 LTRCRNSVVGGPLFRG-----------ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDS 270
+ +S + G L +G +SGG+R+ V++ + ++ P L+LD+ TS LD+
Sbjct: 129 VKSGAHSFISG-LPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 187
Query: 271 TTAQRIVATL-RGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF 329
+ ++ L R R+V+ S L D ++ L G+ G Q+M+
Sbjct: 188 NSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQLMEKK 245
Query: 330 G 330
G
Sbjct: 246 G 246
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ 296
+SGG+++R++I + + L LDEP S LD + + I L L G+ +I H+
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGL 283
++++V G +SGG+R R+S+ + + + LLD P LD T + I + + +
Sbjct: 131 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 190
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
A R ++T+ + + DK+++L EGS + G +++ +
Sbjct: 191 ANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGTFSELQN 230
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ 296
+SGGE +RV+I +L DEP+S LD ++ +R LA G+ V+ H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297
+SGGE +RV+I +L + LLDEP++ LD + +R L +
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 298 SSRLYRMFDKVVVLSEGSPIYSGRA 322
+ + D+++V EG P GRA
Sbjct: 532 VLMIDYVSDRLIVF-EGEPGRHGRA 555
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGL 283
++++V G +SGG+R R+S+ + + + LLD P LD T + I + + +
Sbjct: 119 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 178
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
A R ++T+ + + DK+++L EGS + G +++ +
Sbjct: 179 ANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGTFSELQN 218
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ 296
+SGGE +RV+I +L DEP+S LD ++ +R LA G+ V+ H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297
+SGGE +RV+I +L + LLDEP++ LD + +R L +
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
Query: 298 SSRLYRMFDKVVVLSEGSPIYSGRA 322
+ + D+++V EG P GRA
Sbjct: 518 VLMIDYVSDRLIVF-EGEPGRHGRA 541
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGL 283
++++V G +SGG+R R+S+ + + + LLD P LD T + I + + +
Sbjct: 148 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
A R ++T+ + + DK+++L EGS + G +++ +
Sbjct: 208 ANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQN 247
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGL 283
++++V G +SGG+R R+S+ + + + LLD P LD T + I + + +
Sbjct: 148 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
A R ++T+ + + DK+++L EGS + G +++ +
Sbjct: 208 ANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQN 247
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGL 283
++++V G +SGG+R R+S+ + + + LLD P LD T + I + + +
Sbjct: 118 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 177
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
A R ++T+ + + DK+++L EGS + G +++ +
Sbjct: 178 ANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGTFSELQN 217
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGL 283
++++V G +SGG+R R+S+ + + + LLD P LD T + I + + +
Sbjct: 149 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 208
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
A R ++T+ + + DK+++L EGS + G +++ +
Sbjct: 209 ANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQN 248
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
+SGGE +RV+I +L N + DEP+S LD +R L+ G++V+ H
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297
+SGGE +RV+I +L + LLDEP++ LD + +R L +
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHD 461
Query: 298 SSRLYRMFDKVVVLSEGSPIYSGRA 322
+ + D++ V EG P GRA
Sbjct: 462 VLXIDYVSDRLXVF-EGEPGKYGRA 485
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 40/222 (18%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGR-----QFS--- 166
VL ++ ++ GE+LA+ G G I ++GR QFS
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS-EGIIKHSGRVSFCSQFSWIM 111
Query: 167 -SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
++K V+ D+ Y S +L + +T+ EQ V+ E G+T
Sbjct: 112 PGTIKENIIGVSYDEYRYK--------SVVKACQLQQDITK--FAEQDNTVLGEGGVT-- 159
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGL 283
+SGG+R R+S+ + + + LLD P LD T +++ + + +
Sbjct: 160 ------------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 207
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
A R ++T+ + R DK+++L +GS + G +++
Sbjct: 208 ANKTRILVTSKMEH----LRKADKILILHQGSSYFYGTFSEL 245
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGLARGGRTVITTIH 295
+SGG+R R+S+ + + + LLD P LD T +++ + + +A R ++T+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
+ R DK+++L +GS + G +++
Sbjct: 221 EH----LRKADKILILHQGSSYFYGTFSEL 246
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLL--LDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
+SGGE +R+ + ++ + +L LDEP+ GL R++ATL+ + G T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSG 320
+ L D ++ + G+ I+ G
Sbjct: 565 DEDTML--AADYLIDIGPGAGIHGG 587
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 238 ISGGERKRVSIGQEMLVNP---SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI 294
+SGGE +RV + E+ + +LDEPT+GL R++ L L G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 295 H 295
H
Sbjct: 906 H 906
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGLARGGRTVITTIH 295
+SGG+R R+S+ + + + LLD P LD T +++ + + +A R ++T+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
+ R DK+++L +GS + G +++
Sbjct: 221 EH----LRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGLARGGRTVITTIH 295
+SGG+R R+S+ + + + LLD P LD T +++ + + +A R ++T+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
+ R DK+++L +GS + G +++
Sbjct: 221 EH----LRKADKILILHQGSSYFYGTFSEL 246
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLL--LDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
+SGGE +R+ + ++ + +L LDEP+ GL R++ATL+ + G T+I H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSG 320
+ L D ++ + G+ I+ G
Sbjct: 263 DEDTML--AADYLIDIGPGAGIHGG 285
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 238 ISGGERKRVSIGQEM--LVNPSCL-LLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI 294
+SGGE +RV + E+ N L +LDEPT+GL R++ L L G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 295 HQ 296
H
Sbjct: 604 HN 605
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGLARGGRTVITTIH 295
+SGG+R R+S+ + + + LLD P LD T +++ + + +A R ++T+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
+ R DK+++L +GS + G +++
Sbjct: 221 EH----LRKADKILILHQGSSYFYGTFSEL 246
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 207 EEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNP---SCLLLDE 263
E I +A + E+GL R +G P +SGGE +R+ + E+ + + +LDE
Sbjct: 704 ESAIFRALDTLREVGLGYLR---LGQPATE-LSGGEAQRIKLATELRRSGRGGTVYVLDE 759
Query: 264 PTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ 296
PT+GL +R+ L L G TVI H+
Sbjct: 760 PTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 238 ISGGERKRVSIGQEMLVN--PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
+S GE +R+ + ++ N +LDEP++GL + +++ L L RGG ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 238 ISGGERKRVSIGQEML-----VNPS--CLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
+SGGE +RV + +L NP+ LLLDEP + LD + L L++ G +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAI 186
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
+ + H + L R + +L G + SGR +V+
Sbjct: 187 VXSSHDLNHTL-RHAHRAWLLKGGKXLASGRREEVL 221
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 238 ISGGERKRVSIGQEML---VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI 294
+SGGE +RV + E+ + +LDEPT+GL ++++ + GL G TVI
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 295 HQ 296
H
Sbjct: 924 HN 925
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLL--LDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
+SGGE +R+ + ++ +L LDEP+ GL +R++ TL L G T+I H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSGR 321
+ D +V + G+ + GR
Sbjct: 582 DEDT--IEHADWIVDIGPGAGEHGGR 605
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLL--LDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
+SGGE +R+ + ++ + +L LDEP+ GL R++ATL+ G T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSG 320
+ L D ++ + G+ I+ G
Sbjct: 565 DEDTXL--AADYLIDIGPGAGIHGG 587
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 238 ISGGERKRVSIGQEMLVNP---SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI 294
+SGGE +RV + E+ + +LDEPT+GL R++ L L G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 295 H 295
H
Sbjct: 906 H 906
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 238 ISGGERKRVSIGQEML-----VNPS--CLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
+SGGE +RV + +L NP+ LLLDEP + LD + L L + G +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAI 186
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
+ + H + L R + +L G + SGR +V+
Sbjct: 187 VXSSHDLNHTL-RHAHRAWLLKGGKXLASGRREEVL 221
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 236 RGISGGERKRVSIGQEMLVNP------SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
RG+SGGER +SI M + +DE S LD+ ++I + L+ L R +
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 290 VITTIHQPSSRLYRMFDKVVVLSEG 314
++ H FD+ + ++ G
Sbjct: 338 IVFITH--DREFSEAFDRKLRITGG 360
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
+S GE++RV I + + P L+LDEP +GLD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 217 IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
++E G T + + P+ +SGG + ++++ + +L N LLLDEPT+ LD+ +
Sbjct: 526 LIEFGFT---DEXIAXPI-SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWL 581
Query: 277 VATLRGLARGGRTVITTIH 295
V L G T IT H
Sbjct: 582 VNYLNTC---GITSITISH 597
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 202 KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLL 261
+ LTR+E E LGL +V RG+SGG++ ++ + P ++L
Sbjct: 867 RPLTRKEIEEHCSX----LGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVL 919
Query: 262 DEPTSGLDSTTAQRIVATLRGLARGGRTVIT 292
DEPT+ LD + + L+ GG +IT
Sbjct: 920 DEPTNYLDRDSLGALSKALKEF-EGGVIIIT 949
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLL--LDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
+SGGE +R+ + ++ + ++ LDEPT GL +R++ TL+ L G TVI H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 296 Q 296
Sbjct: 525 D 525
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 238 ISGGERKRVSIGQEML---VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI 294
+SGGE +R+ + E+ + +LDEPT GL +++V L L G TVI
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 295 HQ 296
H
Sbjct: 866 HN 867
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 217 IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
++E G T + + P+ +SGG + ++++ + +L N LLLDEPT+ LD+ +
Sbjct: 532 LIEFGFT---DEXIAXPI-SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587
Query: 277 VATLRGLARGGRTVITTIH 295
V L G T IT H
Sbjct: 588 VNYLNTC---GITSITISH 603
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 202 KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLL 261
+ LTR+E E LGL +V RG+SGG++ ++ + P ++L
Sbjct: 873 RPLTRKEIEEHCSX----LGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVL 925
Query: 262 DEPTSGLDSTTAQRIVATLRGLARGGRTVIT 292
DEPT+ LD + + L+ GG +IT
Sbjct: 926 DEPTNYLDRDSLGALSKALKEF-EGGVIIIT 955
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 202 KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLL 261
+ LTR+E E M LGL +V RG+SGG++ ++ + P ++L
Sbjct: 873 RPLTRKEIEEHCSM----LGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVL 925
Query: 262 DEPTSGLDSTTAQRIVATLRGLARGGRTVIT 292
DEPT+ LD + + L+ GG +IT
Sbjct: 926 DEPTNYLDRDSLGALSKALKEF-EGGVIIIT 955
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 217 IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
++E G T + ++ P+ +SGG + ++++ + +L N LLLDEPT+ LD+ +
Sbjct: 532 LIEFGFT---DEMIAMPI-SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587
Query: 277 VATLRGLARGGRTVITTIH 295
V L G T IT H
Sbjct: 588 VNYLNTC---GITSITISH 603
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 238 ISGGERKRVSIGQEML-----VNPS--CLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
+SGGE +RV + +L NP+ LLLD+P + LD + L L++ G +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAI 186
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
+ + H + L R + +L G + SGR +V+
Sbjct: 187 VMSSHDLNHTL-RHAHRAWLLKGGKMLASGRREEVL 221
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 238 ISGGERKRVSIGQEML-----VNPS--CLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
+SGGE +RV + +L NP+ LLLD+P LD + L L++ G +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAI 186
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
+ + H + L R + +L G + SGR +V+
Sbjct: 187 VMSSHDLNHTL-RHAHRAWLLKGGKMLASGRREEVL 221
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 236 RGISGGERKRVSIGQEMLVNP------SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
RG+SGGER +SI + +DE S LD+ ++I + L+ L R +
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 290 VITTIHQPSSRLYRMFDKVVVLSEG 314
++ H FD+ + ++ G
Sbjct: 338 IVFITH--DREFSEAFDRKLRITGG 360
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL---RGLARGGRTVITTI 294
+SGG+++RVS+ + + N L D+P S +D+ + I + +G+ + +T I
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK-NKTRILVT 186
Query: 295 HQPSSRLYRMFDKVVVLSEG 314
H S D ++V+S G
Sbjct: 187 H--SMSYLPQVDVIIVMSGG 204
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT---LRGLARGGRTVITTI 294
+SGGE +RV+I + + L+DEP++ LDS QRI+ + R + +T
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDS--EQRIICSKVIRRFILHNKKTAFIVE 525
Query: 295 HQPSSRLYRMFDKVVVLSEGSPIYSGRA 322
H Y + DKV+V EG P + A
Sbjct: 526 HDFIMATY-LADKVIVF-EGIPSKNAHA 551
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
+SGGE +R +IG + + DEP+S LD +R L + VI H
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL--RGL 283
++++V G +S G++ ++S+ + + + LLD P LD T + I + + +
Sbjct: 149 KDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 208
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
A R ++T+ + + DK+++L EGS + G +++ +
Sbjct: 209 ANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQN 248
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL--RGL 283
++++V G +S G++ ++S+ + + + LLD P LD T + I + + +
Sbjct: 148 KDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
A R ++T+ + + DK+++L EGS + G +++ +
Sbjct: 208 ANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQN 247
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 154 FSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTRE--EKIE 211
G+I YNG + +K K F+ ++ ++ ++V + L A L K E + +E
Sbjct: 62 LKGEIIYNGVPITK-VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE 120
Query: 212 QAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDST 271
E++ ++ L +S G +RV + +LVN +LD+P +D
Sbjct: 121 SVEVLDLKKKLGE-------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 167
Query: 272 TAQRIVAT-LRGLARGGRTVITT 293
+ +++ + L L G +I++
Sbjct: 168 SKHKVLKSILEILKEKGIVIISS 190
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 214 EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
E V L L R S V +SGGE +++ I + +LD+P+S LD
Sbjct: 367 EEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421
Query: 274 QRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAA 323
+ ++ + R + V I S + D+++V +G P +G A
Sbjct: 422 YIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAGLAT 470
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 238 ISGGERK------RVSIGQEMLVNP-SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
+SGGE+ R++I ++ N C++LDEPT LD ++ R + + +
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 291 ITTIHQP 297
I T H+
Sbjct: 341 IITHHRE 347
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
+S G ++ + + + +L LLLDEP++ LD T Q I TL+
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLK 199
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 236 RGISGGERKRVSIGQEMLVNP------SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
RG+SGGER +SI M + +DE S L + ++I + L+ L R +
Sbjct: 295 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLCTENKEKIASVLKELERLNKV 354
Query: 290 VI 291
++
Sbjct: 355 IV 356
>pdb|4AU9|A Chain A, Crystal Structure Of A Fungal Dyp-type Peroxidase From
Auricularia Auricula-judae
pdb|4AU9|B Chain B, Crystal Structure Of A Fungal Dyp-type Peroxidase From
Auricularia Auricula-judae
Length = 448
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 338 FNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMA 397
F + +PA F LA+ IAP V QL N Q L++ + L+A
Sbjct: 27 FAINDPATFKTFLASDIAPVVASVTQLS-----------NVATQPLVALNIAFSNTGLLA 75
Query: 398 -EIQQNVGDPI-ASGKSSRKNCDNEWTASWWEQF 429
+ N+GD + A+G++ E T+SW QF
Sbjct: 76 LGVTDNLGDSLFANGQAKDATSFKESTSSWVPQF 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,448,242
Number of Sequences: 62578
Number of extensions: 706837
Number of successful extensions: 1636
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1462
Number of HSP's gapped (non-prelim): 139
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)