Query 005545
Match_columns 691
No_of_seqs 479 out of 3332
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 01:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03211 ABC transporter G-25; 100.0 1E-108 2E-113 956.4 72.4 604 71-690 31-659 (659)
2 KOG0061 Transporter, ABC super 100.0 3E-107 7E-112 935.1 60.4 577 75-690 21-609 (613)
3 TIGR00955 3a01204 The Eye Pigm 100.0 9E-103 2E-107 905.0 64.0 563 111-689 36-613 (617)
4 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-98 2E-103 931.7 62.3 602 76-690 26-695 (1394)
5 PLN03140 ABC transporter G fam 100.0 1.9E-97 4E-102 918.0 66.9 583 75-690 863-1467(1470)
6 PLN03140 ABC transporter G fam 100.0 1.2E-96 3E-101 911.1 60.5 601 75-690 127-790 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 2.5E-95 5E-100 901.8 64.7 569 78-688 758-1389(1394)
8 KOG0065 Pleiotropic drug resis 100.0 3.3E-92 7.2E-97 823.8 36.7 508 111-643 802-1324(1391)
9 KOG0065 Pleiotropic drug resis 100.0 1.4E-86 3.1E-91 776.5 46.3 565 112-690 127-731 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 1.6E-53 3.4E-58 417.0 25.5 219 79-327 2-225 (240)
11 COG1135 AbcC ABC-type metal io 100.0 9.7E-51 2.1E-55 415.7 22.9 223 79-327 1-231 (339)
12 COG1125 OpuBA ABC-type proline 100.0 4.7E-50 1E-54 399.6 22.2 218 79-327 1-225 (309)
13 COG1131 CcmA ABC-type multidru 100.0 1.6E-48 3.4E-53 412.7 27.7 225 79-333 4-232 (293)
14 COG1127 Ttg2A ABC-type transpo 100.0 1E-48 2.3E-53 388.5 24.0 221 77-327 6-235 (263)
15 COG1120 FepC ABC-type cobalami 100.0 1.2E-48 2.7E-53 399.8 22.3 220 79-326 2-227 (258)
16 COG3842 PotA ABC-type spermidi 100.0 1.5E-48 3.4E-53 415.2 23.2 221 77-327 3-226 (352)
17 COG3839 MalK ABC-type sugar tr 100.0 3.5E-48 7.5E-53 410.5 24.8 219 79-328 3-224 (338)
18 COG1136 SalX ABC-type antimicr 100.0 1.1E-47 2.3E-52 385.8 25.5 209 80-316 2-220 (226)
19 COG3638 ABC-type phosphate/pho 100.0 2.7E-48 5.9E-53 384.6 20.9 222 78-327 2-237 (258)
20 COG4555 NatA ABC-type Na+ tran 100.0 1.9E-48 4E-53 376.2 17.8 234 79-351 1-237 (245)
21 COG1116 TauB ABC-type nitrate/ 100.0 1E-47 2.2E-52 386.4 23.8 205 78-314 2-207 (248)
22 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.5E-47 7.7E-52 387.2 25.0 219 78-327 3-227 (254)
23 COG2884 FtsE Predicted ATPase 100.0 1.3E-47 2.9E-52 367.4 20.0 213 79-321 1-220 (223)
24 COG1118 CysA ABC-type sulfate/ 100.0 4.5E-47 9.8E-52 387.8 20.8 209 112-328 14-228 (345)
25 PRK13537 nodulation ABC transp 100.0 4.8E-46 1E-50 396.6 29.4 220 78-328 6-228 (306)
26 TIGR02314 ABC_MetN D-methionin 100.0 7.5E-46 1.6E-50 399.6 29.1 221 79-326 1-229 (343)
27 PRK11650 ugpC glycerol-3-phosp 100.0 1.1E-45 2.4E-50 401.0 29.0 219 79-327 3-224 (356)
28 COG1124 DppF ABC-type dipeptid 100.0 4.6E-46 1E-50 371.3 22.7 223 78-328 2-232 (252)
29 PRK13536 nodulation factor exp 100.0 2.3E-45 5E-50 396.1 30.1 224 74-328 36-262 (340)
30 TIGR03265 PhnT2 putative 2-ami 100.0 1.8E-45 3.9E-50 398.8 29.1 218 79-327 4-224 (353)
31 cd03261 ABC_Org_Solvent_Resist 100.0 2.2E-45 4.7E-50 377.2 27.4 217 80-326 1-225 (235)
32 PRK11432 fbpC ferric transport 100.0 2.9E-45 6.2E-50 396.7 29.1 218 79-327 6-226 (351)
33 COG1117 PstB ABC-type phosphat 100.0 3.6E-46 7.9E-51 363.6 19.7 223 76-326 4-236 (253)
34 TIGR03258 PhnT 2-aminoethylpho 100.0 5E-45 1.1E-49 396.1 29.1 218 79-327 5-228 (362)
35 PRK10851 sulfate/thiosulfate t 100.0 9.1E-45 2E-49 393.3 29.3 221 79-327 2-226 (353)
36 PRK09452 potA putrescine/sperm 100.0 9.9E-45 2.2E-49 395.3 29.4 220 77-327 12-234 (375)
37 TIGR01288 nodI ATP-binding ABC 100.0 1.7E-44 3.6E-49 384.6 29.1 219 78-327 3-224 (303)
38 TIGR01188 drrA daunorubicin re 100.0 8.3E-45 1.8E-49 386.7 26.3 210 110-329 3-215 (302)
39 COG1122 CbiO ABC-type cobalt t 100.0 7.3E-45 1.6E-49 371.0 24.7 220 79-328 3-229 (235)
40 cd03265 ABC_DrrA DrrA is the A 100.0 1.9E-44 4.1E-49 366.6 27.0 215 80-325 1-219 (220)
41 cd03259 ABC_Carb_Solutes_like 100.0 1.5E-44 3.2E-49 365.4 25.9 210 80-320 1-213 (213)
42 PRK11000 maltose/maltodextrin 100.0 3E-44 6.4E-49 391.9 29.2 218 79-327 3-223 (369)
43 TIGR00960 3a0501s02 Type II (G 100.0 1.9E-44 4.2E-49 365.4 25.7 208 80-316 2-216 (216)
44 PRK11153 metN DL-methionine tr 100.0 3.4E-44 7.4E-49 388.1 29.3 222 79-327 1-230 (343)
45 cd03296 ABC_CysA_sulfate_impor 100.0 3.6E-44 7.7E-49 369.2 28.0 220 79-326 2-225 (239)
46 PRK11607 potG putrescine trans 100.0 4E-44 8.7E-49 391.0 29.3 219 78-327 18-239 (377)
47 cd03219 ABC_Mj1267_LivG_branch 100.0 3.3E-44 7.2E-49 368.4 27.0 219 80-326 1-231 (236)
48 cd03269 ABC_putative_ATPase Th 100.0 3.7E-44 8E-49 361.8 25.8 210 80-320 1-210 (210)
49 COG3840 ThiQ ABC-type thiamine 100.0 6.6E-45 1.4E-49 346.3 18.8 215 80-327 2-219 (231)
50 COG1137 YhbG ABC-type (unclass 100.0 1.1E-45 2.3E-50 356.7 13.5 210 110-327 14-228 (243)
51 TIGR01186 proV glycine betaine 100.0 3.9E-44 8.5E-49 388.4 27.3 209 109-327 2-219 (363)
52 PRK13643 cbiO cobalt transport 100.0 9.3E-44 2E-48 376.2 29.4 233 79-338 1-247 (288)
53 cd03218 ABC_YhbG The ABC trans 100.0 6.2E-44 1.3E-48 365.4 26.9 216 80-326 1-221 (232)
54 cd03258 ABC_MetN_methionine_tr 100.0 6.2E-44 1.3E-48 365.8 26.8 220 80-326 2-229 (233)
55 cd03266 ABC_NatA_sodium_export 100.0 5.5E-44 1.2E-48 362.4 26.1 214 80-320 2-218 (218)
56 TIGR03522 GldA_ABC_ATP gliding 100.0 8.8E-44 1.9E-48 378.6 28.9 218 79-328 2-222 (301)
57 cd03293 ABC_NrtD_SsuB_transpor 100.0 7.7E-44 1.7E-48 362.1 26.9 216 80-323 1-219 (220)
58 cd03301 ABC_MalK_N The N-termi 100.0 6.9E-44 1.5E-48 360.4 26.3 210 80-320 1-213 (213)
59 PRK13637 cbiO cobalt transport 100.0 1.7E-43 3.6E-48 374.1 30.3 223 79-327 2-234 (287)
60 cd03263 ABC_subfamily_A The AB 100.0 8.1E-44 1.7E-48 361.7 26.2 216 80-325 1-219 (220)
61 PRK11264 putative amino-acid A 100.0 1.3E-43 2.7E-48 367.3 27.9 218 79-326 3-232 (250)
62 PRK09493 glnQ glutamine ABC tr 100.0 1.5E-43 3.2E-48 364.8 27.9 217 80-326 2-224 (240)
63 cd03260 ABC_PstB_phosphate_tra 100.0 6.6E-44 1.4E-48 364.2 24.9 216 80-324 1-226 (227)
64 cd03256 ABC_PhnC_transporter A 100.0 8.9E-44 1.9E-48 366.2 26.0 220 80-326 1-233 (241)
65 PRK13647 cbiO cobalt transport 100.0 2.6E-43 5.7E-48 370.2 29.4 217 79-325 4-225 (274)
66 PRK09536 btuD corrinoid ABC tr 100.0 1.1E-43 2.4E-48 389.4 27.7 220 79-326 3-227 (402)
67 PRK11831 putative ABC transpor 100.0 2.2E-43 4.8E-48 369.8 28.5 219 78-326 6-232 (269)
68 PRK13634 cbiO cobalt transport 100.0 3E-43 6.6E-48 372.6 29.6 232 79-337 2-248 (290)
69 PRK15079 oligopeptide ABC tran 100.0 2.8E-43 6E-48 378.8 29.7 235 77-327 6-251 (331)
70 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.9E-43 4.1E-48 364.5 27.3 217 80-326 1-224 (242)
71 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-43 2.9E-48 360.4 25.5 214 80-326 1-220 (222)
72 COG0411 LivG ABC-type branched 100.0 3.3E-44 7.1E-49 358.3 20.5 222 78-327 3-239 (250)
73 PRK13650 cbiO cobalt transport 100.0 2.8E-43 6E-48 371.0 28.6 228 79-335 4-240 (279)
74 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-43 2.5E-48 372.0 25.6 211 107-327 31-250 (269)
75 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.7E-43 3.6E-48 358.9 24.9 209 80-316 1-218 (218)
76 PRK13631 cbiO cobalt transport 100.0 5.8E-43 1.3E-47 374.8 30.4 233 78-337 20-278 (320)
77 TIGR02315 ABC_phnC phosphonate 100.0 1.5E-43 3.3E-48 365.0 24.8 219 80-325 2-233 (243)
78 TIGR01257 rim_protein retinal- 100.0 1.5E-40 3.2E-45 414.7 56.0 227 77-334 926-1155(2272)
79 COG4152 ABC-type uncharacteriz 100.0 4.3E-44 9.4E-49 354.8 19.4 224 79-333 2-225 (300)
80 cd03268 ABC_BcrA_bacitracin_re 100.0 2E-43 4.4E-48 355.9 24.7 206 80-320 1-208 (208)
81 PRK13651 cobalt transporter AT 100.0 4E-43 8.8E-48 373.8 28.3 223 79-327 2-254 (305)
82 COG0410 LivF ABC-type branched 100.0 1.5E-43 3.2E-48 351.1 22.8 217 79-327 3-226 (237)
83 cd03234 ABCG_White The White s 100.0 3.9E-43 8.6E-48 358.5 26.8 220 79-320 3-226 (226)
84 PRK11629 lolD lipoprotein tran 100.0 5.9E-43 1.3E-47 358.8 28.0 217 78-322 4-229 (233)
85 TIGR02673 FtsE cell division A 100.0 3.2E-43 7E-48 355.8 25.5 206 80-315 2-214 (214)
86 PRK10895 lipopolysaccharide AB 100.0 4.7E-43 1E-47 361.2 26.9 218 79-326 3-225 (241)
87 PRK13646 cbiO cobalt transport 100.0 5.9E-43 1.3E-47 369.7 28.3 222 79-327 2-235 (286)
88 cd03292 ABC_FtsE_transporter F 100.0 3.8E-43 8.3E-48 355.1 25.6 207 80-316 1-214 (214)
89 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 8.2E-43 1.8E-47 358.4 28.4 216 80-327 2-221 (236)
90 TIGR00972 3a0107s01c2 phosphat 100.0 7.3E-43 1.6E-47 361.2 28.2 216 79-326 1-231 (247)
91 PRK11308 dppF dipeptide transp 100.0 9.6E-43 2.1E-47 374.2 30.0 230 78-327 4-244 (327)
92 PRK13636 cbiO cobalt transport 100.0 5.6E-43 1.2E-47 369.4 27.7 222 76-327 2-231 (283)
93 PRK10619 histidine/lysine/argi 100.0 9.4E-43 2E-47 362.5 29.0 219 78-326 4-240 (257)
94 PRK11614 livF leucine/isoleuci 100.0 5.1E-43 1.1E-47 360.1 26.5 216 78-326 4-225 (237)
95 PRK09473 oppD oligopeptide tra 100.0 1.1E-42 2.4E-47 374.1 29.7 229 77-327 10-251 (330)
96 PRK13641 cbiO cobalt transport 100.0 1.2E-42 2.5E-47 367.7 28.8 222 79-327 2-234 (287)
97 PRK11124 artP arginine transpo 100.0 1.2E-42 2.5E-47 358.5 28.0 216 79-325 2-228 (242)
98 cd03264 ABC_drug_resistance_li 100.0 5.2E-43 1.1E-47 353.6 24.9 208 80-320 1-211 (211)
99 PRK14268 phosphate ABC transpo 100.0 1.4E-42 3E-47 361.6 28.7 218 77-326 10-241 (258)
100 PRK13635 cbiO cobalt transport 100.0 1.5E-42 3.2E-47 365.4 28.9 220 78-327 4-229 (279)
101 PRK11300 livG leucine/isoleuci 100.0 1.3E-42 2.8E-47 360.8 27.9 221 78-326 4-242 (255)
102 PRK13638 cbiO cobalt transport 100.0 1.1E-42 2.3E-47 365.0 26.9 218 79-327 1-225 (271)
103 PRK10908 cell division protein 100.0 1.3E-42 2.8E-47 353.6 26.7 208 80-317 2-216 (222)
104 PRK13644 cbiO cobalt transport 100.0 1.2E-42 2.6E-47 365.2 27.2 216 80-326 2-223 (274)
105 TIGR01978 sufC FeS assembly AT 100.0 1.6E-42 3.4E-47 357.3 27.5 221 80-326 1-233 (243)
106 TIGR03005 ectoine_ehuA ectoine 100.0 1.5E-42 3.3E-47 359.8 27.5 217 80-326 1-235 (252)
107 TIGR03411 urea_trans_UrtD urea 100.0 1.8E-42 3.8E-47 357.1 27.8 219 79-326 2-230 (242)
108 PRK14247 phosphate ABC transpo 100.0 2.3E-42 5.1E-47 357.9 28.5 219 79-326 3-233 (250)
109 PRK11248 tauB taurine transpor 100.0 1.8E-42 3.9E-47 360.2 27.7 213 79-323 1-216 (255)
110 cd03226 ABC_cobalt_CbiO_domain 100.0 6.3E-43 1.4E-47 351.6 23.6 191 113-317 13-205 (205)
111 PRK13548 hmuV hemin importer A 100.0 1.7E-42 3.6E-47 361.0 27.5 217 79-326 2-229 (258)
112 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-42 2.3E-47 351.6 25.2 207 80-316 1-213 (213)
113 PRK11022 dppD dipeptide transp 100.0 2.1E-42 4.5E-47 371.6 28.9 224 79-327 3-243 (326)
114 PRK14267 phosphate ABC transpo 100.0 3.1E-42 6.8E-47 357.6 28.6 219 79-326 4-236 (253)
115 cd03257 ABC_NikE_OppD_transpor 100.0 1.7E-42 3.6E-47 353.6 26.1 215 80-320 2-228 (228)
116 COG0444 DppD ABC-type dipeptid 100.0 1.1E-42 2.4E-47 361.1 25.0 226 80-327 2-243 (316)
117 TIGR02211 LolD_lipo_ex lipopro 100.0 1.8E-42 4E-47 352.0 26.2 210 80-317 2-220 (221)
118 PRK14273 phosphate ABC transpo 100.0 2.9E-42 6.4E-47 358.1 28.2 218 78-326 6-237 (254)
119 PRK14242 phosphate transporter 100.0 3E-42 6.6E-47 357.7 28.2 224 76-326 3-236 (253)
120 PRK13652 cbiO cobalt transport 100.0 3E-42 6.5E-47 362.7 28.5 219 79-327 3-227 (277)
121 COG4175 ProV ABC-type proline/ 100.0 1.5E-43 3.3E-48 362.2 17.8 241 77-327 2-254 (386)
122 PRK13639 cbiO cobalt transport 100.0 4.4E-42 9.6E-47 361.1 29.4 218 80-327 2-226 (275)
123 PRK10070 glycine betaine trans 100.0 2.6E-42 5.7E-47 378.3 28.7 239 79-327 4-254 (400)
124 TIGR03415 ABC_choXWV_ATP choli 100.0 1.2E-42 2.6E-47 378.6 25.8 237 80-326 1-253 (382)
125 PRK13649 cbiO cobalt transport 100.0 4.9E-42 1.1E-46 361.6 29.7 222 79-327 2-234 (280)
126 cd03225 ABC_cobalt_CbiO_domain 100.0 1.3E-42 2.8E-47 350.6 24.1 193 113-315 14-211 (211)
127 KOG0058 Peptide exporter, ABC 100.0 1.7E-43 3.6E-48 396.3 19.1 218 79-327 465-691 (716)
128 PRK11231 fecE iron-dicitrate t 100.0 2.4E-42 5.3E-47 359.0 26.3 220 79-326 2-226 (255)
129 PRK11247 ssuB aliphatic sulfon 100.0 2.5E-42 5.5E-47 359.3 26.3 208 78-323 11-219 (257)
130 PRK13632 cbiO cobalt transport 100.0 3.1E-42 6.7E-47 361.5 27.1 222 76-327 4-231 (271)
131 PRK10575 iron-hydroxamate tran 100.0 2.5E-42 5.4E-47 361.0 26.2 221 78-326 10-236 (265)
132 PRK15093 antimicrobial peptide 100.0 5.1E-42 1.1E-46 369.4 29.2 229 79-327 3-248 (330)
133 TIGR02769 nickel_nikE nickel i 100.0 3.8E-42 8.3E-47 359.7 27.5 228 79-327 2-240 (265)
134 PRK13648 cbiO cobalt transport 100.0 6.8E-42 1.5E-46 358.5 29.4 221 76-326 4-230 (269)
135 cd03267 ABC_NatA_like Similar 100.0 1.8E-42 3.8E-47 356.2 24.5 230 81-320 2-236 (236)
136 cd03235 ABC_Metallic_Cations A 100.0 1.1E-42 2.4E-47 351.8 22.3 199 113-320 12-213 (213)
137 PRK13640 cbiO cobalt transport 100.0 6.2E-42 1.3E-46 361.2 28.3 221 77-327 3-232 (282)
138 PRK10253 iron-enterobactin tra 100.0 4.3E-42 9.4E-47 359.2 26.4 222 77-326 5-232 (265)
139 TIGR03410 urea_trans_UrtE urea 100.0 4E-42 8.7E-47 351.7 25.4 212 80-325 1-219 (230)
140 PRK14241 phosphate transporter 100.0 8.8E-42 1.9E-46 355.5 28.3 219 79-327 4-242 (258)
141 PRK10584 putative ABC transpor 100.0 7.4E-42 1.6E-46 349.3 27.2 214 78-319 5-227 (228)
142 PRK09984 phosphonate/organopho 100.0 5.9E-42 1.3E-46 357.6 26.9 220 79-325 4-240 (262)
143 PRK14235 phosphate transporter 100.0 1.2E-41 2.5E-46 356.4 29.1 224 77-326 17-250 (267)
144 TIGR03873 F420-0_ABC_ATP propo 100.0 5.3E-42 1.1E-46 356.7 26.2 219 80-326 2-225 (256)
145 PRK14245 phosphate ABC transpo 100.0 1.1E-41 2.4E-46 353.0 28.5 223 78-327 2-234 (250)
146 PRK13633 cobalt transporter AT 100.0 7.5E-42 1.6E-46 360.3 27.6 222 79-327 4-233 (280)
147 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.4E-42 9.6E-47 346.9 24.7 208 80-320 1-211 (211)
148 TIGR03740 galliderm_ABC gallid 100.0 7.2E-42 1.6E-46 348.4 26.5 210 80-324 1-210 (223)
149 PRK10744 pstB phosphate transp 100.0 1.1E-41 2.3E-46 355.3 28.3 219 77-326 11-243 (260)
150 TIGR00968 3a0106s01 sulfate AB 100.0 1.1E-41 2.3E-46 350.5 27.3 216 80-326 1-219 (237)
151 cd03300 ABC_PotA_N PotA is an 100.0 1.3E-41 2.9E-46 348.6 27.6 216 80-326 1-219 (232)
152 PRK14269 phosphate ABC transpo 100.0 1.3E-41 2.8E-46 351.8 27.6 222 79-326 2-229 (246)
153 PRK13645 cbiO cobalt transport 100.0 1.2E-41 2.5E-46 360.4 27.8 221 79-326 6-239 (289)
154 PRK14256 phosphate ABC transpo 100.0 1.8E-41 4E-46 351.8 28.6 222 79-326 4-235 (252)
155 PRK14250 phosphate ABC transpo 100.0 8.8E-42 1.9E-46 352.0 26.0 212 79-326 3-220 (241)
156 PRK10771 thiQ thiamine transpo 100.0 9.6E-42 2.1E-46 349.6 26.1 215 80-327 2-219 (232)
157 PRK14259 phosphate ABC transpo 100.0 1.4E-41 2.9E-46 356.3 27.8 221 74-327 8-253 (269)
158 COG4559 ABC-type hemin transpo 100.0 1.9E-42 4.1E-47 337.0 19.6 218 79-327 1-230 (259)
159 PRK14237 phosphate transporter 100.0 2.3E-41 5E-46 354.1 29.4 224 77-327 18-251 (267)
160 PRK15112 antimicrobial peptide 100.0 1.5E-41 3.3E-46 355.5 28.0 227 79-326 4-238 (267)
161 TIGR01277 thiQ thiamine ABC tr 100.0 1.2E-41 2.5E-46 344.6 25.9 209 80-321 1-212 (213)
162 COG2274 SunT ABC-type bacterio 100.0 1.2E-42 2.6E-47 402.5 21.2 219 78-328 470-697 (709)
163 PRK14274 phosphate ABC transpo 100.0 2.6E-41 5.6E-46 352.1 28.6 223 78-327 11-243 (259)
164 cd03299 ABC_ModC_like Archeal 100.0 2.4E-41 5.1E-46 347.5 27.7 216 80-327 1-219 (235)
165 PRK13549 xylose transporter AT 100.0 8.2E-42 1.8E-46 388.3 26.8 220 79-325 5-230 (506)
166 PRK11144 modC molybdate transp 100.0 1.4E-41 3E-46 369.0 27.3 194 118-327 16-218 (352)
167 PRK14270 phosphate ABC transpo 100.0 2.8E-41 6.1E-46 350.2 28.3 218 78-326 3-234 (251)
168 PRK13642 cbiO cobalt transport 100.0 2.3E-41 4.9E-46 356.1 27.8 219 79-326 4-228 (277)
169 PRK14239 phosphate transporter 100.0 3.2E-41 7E-46 349.7 28.5 221 79-326 5-235 (252)
170 TIGR02142 modC_ABC molybdenum 100.0 1.6E-41 3.4E-46 369.0 27.3 198 118-327 15-221 (354)
171 cd03233 ABC_PDR_domain1 The pl 100.0 1.5E-41 3.3E-46 341.2 25.0 194 79-320 3-202 (202)
172 PRK14272 phosphate ABC transpo 100.0 3.6E-41 7.9E-46 349.3 28.7 220 78-327 3-236 (252)
173 COG1123 ATPase components of v 100.0 1.2E-41 2.6E-46 376.6 25.9 233 76-327 277-519 (539)
174 PRK14262 phosphate ABC transpo 100.0 4.7E-41 1E-45 348.2 28.6 222 79-327 3-234 (250)
175 PRK14240 phosphate transporter 100.0 5.1E-41 1.1E-45 348.0 28.6 217 79-326 3-233 (250)
176 COG1123 ATPase components of v 100.0 2E-41 4.3E-46 374.8 27.1 227 79-328 5-245 (539)
177 PRK14248 phosphate ABC transpo 100.0 5.2E-41 1.1E-45 351.6 28.4 218 78-326 20-251 (268)
178 PRK13547 hmuV hemin importer A 100.0 2.2E-41 4.7E-46 355.1 25.5 219 80-326 2-243 (272)
179 COG4598 HisP ABC-type histidin 100.0 2E-42 4.3E-47 328.3 15.9 211 107-326 13-240 (256)
180 PRK14253 phosphate ABC transpo 100.0 4.8E-41 1E-45 347.9 27.6 221 79-326 3-232 (249)
181 PRK11174 cysteine/glutathione 100.0 6.9E-42 1.5E-46 395.8 23.6 216 78-327 348-572 (588)
182 PRK14244 phosphate ABC transpo 100.0 6.3E-41 1.4E-45 347.6 28.3 223 78-326 4-236 (251)
183 PRK11701 phnK phosphonate C-P 100.0 5.8E-41 1.3E-45 349.3 28.0 218 79-326 6-240 (258)
184 PRK14251 phosphate ABC transpo 100.0 6.6E-41 1.4E-45 347.3 28.2 218 78-326 3-234 (251)
185 PRK10762 D-ribose transporter 100.0 2.5E-41 5.5E-46 383.8 26.6 219 79-325 4-228 (501)
186 PRK14275 phosphate ABC transpo 100.0 9.8E-41 2.1E-45 352.8 29.3 221 76-327 36-270 (286)
187 PRK09700 D-allose transporter 100.0 2.7E-41 5.9E-46 384.4 26.8 220 78-325 4-232 (510)
188 PRK14271 phosphate ABC transpo 100.0 9.7E-41 2.1E-45 351.1 28.8 224 77-327 19-251 (276)
189 cd03297 ABC_ModC_molybdenum_tr 100.0 4.4E-41 9.6E-46 340.4 25.2 190 118-320 16-214 (214)
190 PRK14236 phosphate transporter 100.0 1.2E-40 2.6E-45 349.6 29.1 222 78-326 24-255 (272)
191 cd03232 ABC_PDR_domain2 The pl 100.0 5E-41 1.1E-45 334.8 24.7 188 79-320 3-192 (192)
192 cd03252 ABCC_Hemolysin The ABC 100.0 1.5E-41 3.2E-46 349.1 21.5 214 80-327 1-225 (237)
193 PRK10418 nikD nickel transport 100.0 1.1E-40 2.3E-45 346.6 28.0 216 77-326 2-229 (254)
194 PRK14260 phosphate ABC transpo 100.0 1.2E-40 2.5E-45 347.3 28.0 217 79-326 7-242 (259)
195 PRK14257 phosphate ABC transpo 100.0 1.2E-40 2.6E-45 358.0 28.9 225 77-327 78-313 (329)
196 PRK14261 phosphate ABC transpo 100.0 1.2E-40 2.6E-45 345.8 28.0 222 78-326 5-236 (253)
197 PRK14249 phosphate ABC transpo 100.0 1.4E-40 2.9E-45 345.1 28.2 220 79-326 4-234 (251)
198 COG4988 CydD ABC-type transpor 100.0 2.4E-41 5.2E-46 372.7 23.8 217 76-327 317-543 (559)
199 TIGR01184 ntrCD nitrate transp 100.0 3.9E-41 8.5E-46 344.8 23.5 201 116-325 1-202 (230)
200 CHL00131 ycf16 sulfate ABC tra 100.0 2E-40 4.3E-45 343.8 28.7 222 78-325 6-239 (252)
201 PRK14254 phosphate ABC transpo 100.0 2.8E-40 6E-45 349.1 30.2 218 76-326 36-268 (285)
202 PRK14238 phosphate transporter 100.0 1.6E-40 3.4E-45 348.7 28.0 219 77-326 22-254 (271)
203 PRK14255 phosphate ABC transpo 100.0 2.1E-40 4.6E-45 343.7 28.6 219 78-327 4-236 (252)
204 PRK14258 phosphate ABC transpo 100.0 2.2E-40 4.7E-45 345.7 28.6 223 79-327 7-245 (261)
205 PRK15439 autoinducer 2 ABC tra 100.0 7.6E-41 1.6E-45 380.6 27.3 213 79-326 11-228 (510)
206 COG4181 Predicted ABC-type tra 100.0 1.4E-41 3.1E-46 320.4 17.7 212 79-318 6-226 (228)
207 TIGR03608 L_ocin_972_ABC putat 100.0 7.7E-41 1.7E-45 336.3 24.1 188 113-311 11-206 (206)
208 COG1132 MdlB ABC-type multidru 100.0 1.6E-41 3.4E-46 391.1 21.7 217 78-327 327-552 (567)
209 KOG0057 Mitochondrial Fe/S clu 100.0 1.4E-41 3E-46 369.3 19.7 213 79-327 351-574 (591)
210 PRK10419 nikE nickel transport 100.0 1.6E-40 3.6E-45 347.9 27.0 228 79-327 3-241 (268)
211 TIGR02982 heterocyst_DevA ABC 100.0 1.7E-40 3.7E-45 337.6 26.2 210 80-316 2-219 (220)
212 cd03213 ABCG_EPDR ABCG transpo 100.0 1.4E-40 3.1E-45 332.1 25.0 191 78-320 2-194 (194)
213 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.8E-41 6.1E-46 397.2 23.4 212 79-327 451-673 (686)
214 TIGR02323 CP_lyasePhnK phospho 100.0 2.4E-40 5.2E-45 343.5 27.2 218 79-326 3-237 (253)
215 PRK14266 phosphate ABC transpo 100.0 2.7E-40 5.8E-45 342.6 27.5 223 78-327 2-234 (250)
216 TIGR02770 nickel_nikD nickel i 100.0 1.3E-40 2.9E-45 340.8 24.7 203 115-326 1-214 (230)
217 cd03251 ABCC_MsbA MsbA is an e 100.0 5.3E-41 1.1E-45 344.2 21.7 215 80-328 1-226 (234)
218 PRK11176 lipid transporter ATP 100.0 4.5E-41 9.8E-46 388.5 23.6 216 79-327 341-567 (582)
219 KOG0055 Multidrug/pheromone ex 100.0 1.2E-41 2.6E-46 400.3 19.0 220 77-327 348-576 (1228)
220 PRK14263 phosphate ABC transpo 100.0 5E-40 1.1E-44 343.0 28.6 223 76-327 5-245 (261)
221 PRK15056 manganese/iron transp 100.0 2.6E-40 5.7E-45 347.1 26.5 220 78-325 5-228 (272)
222 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 6.6E-41 1.4E-45 344.5 21.5 216 80-328 1-227 (238)
223 TIGR02633 xylG D-xylose ABC tr 100.0 1.9E-40 4.2E-45 376.6 27.4 218 80-324 2-227 (500)
224 PRK09580 sufC cysteine desulfu 100.0 4.1E-40 8.9E-45 340.5 27.4 228 80-334 2-241 (248)
225 PRK10261 glutathione transport 100.0 3.5E-40 7.7E-45 383.0 30.0 230 78-326 312-552 (623)
226 PRK10790 putative multidrug tr 100.0 1.6E-40 3.4E-45 384.7 26.3 213 79-327 340-563 (592)
227 cd03254 ABCC_Glucan_exporter_l 100.0 1.1E-40 2.3E-45 340.9 21.8 215 79-328 2-227 (229)
228 PRK11288 araG L-arabinose tran 100.0 3.3E-40 7.1E-45 374.8 28.0 215 79-321 4-223 (501)
229 PRK14265 phosphate ABC transpo 100.0 7E-40 1.5E-44 344.3 28.3 218 76-326 17-257 (274)
230 PRK14243 phosphate transporter 100.0 4.7E-40 1E-44 343.7 26.8 221 78-327 9-248 (264)
231 PRK10982 galactose/methyl gala 100.0 2.7E-40 5.9E-45 374.5 25.9 206 113-325 11-221 (491)
232 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6.9E-41 1.5E-45 395.4 21.8 213 79-327 477-700 (710)
233 PRK10247 putative ABC transpor 100.0 3.3E-40 7.2E-45 336.9 23.7 211 77-322 5-222 (225)
234 TIGR01257 rim_protein retinal- 100.0 4E-40 8.7E-45 410.8 29.2 228 77-334 1935-2165(2272)
235 PRK11160 cysteine/glutathione 100.0 1.7E-40 3.6E-45 382.9 23.9 216 78-327 337-562 (574)
236 TIGR03269 met_CoM_red_A2 methy 100.0 5.3E-40 1.2E-44 374.7 27.7 220 80-329 1-260 (520)
237 PRK10261 glutathione transport 100.0 5E-40 1.1E-44 381.7 27.8 223 78-326 11-257 (623)
238 PRK14246 phosphate ABC transpo 100.0 1.2E-39 2.7E-44 339.3 27.3 219 78-327 9-241 (257)
239 cd03245 ABCC_bacteriocin_expor 100.0 3E-40 6.6E-45 335.5 22.1 209 79-320 2-220 (220)
240 TIGR03375 type_I_sec_LssB type 100.0 1.5E-40 3.2E-45 391.5 22.8 216 79-328 463-689 (694)
241 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.4E-40 1.6E-44 334.2 24.9 223 80-320 1-224 (224)
242 PRK14264 phosphate ABC transpo 100.0 1.6E-39 3.4E-44 346.6 28.4 225 77-326 43-288 (305)
243 PRK13543 cytochrome c biogenes 100.0 8E-40 1.7E-44 331.5 24.8 204 76-313 8-212 (214)
244 PRK13538 cytochrome c biogenes 100.0 8.3E-40 1.8E-44 328.9 24.5 198 80-311 2-202 (204)
245 cd03253 ABCC_ATM1_transporter 100.0 3.6E-40 7.8E-45 338.5 22.1 213 80-327 1-224 (236)
246 COG4525 TauB ABC-type taurine 100.0 4.3E-40 9.3E-45 316.4 21.0 215 79-323 3-220 (259)
247 cd03289 ABCC_CFTR2 The CFTR su 100.0 7.1E-40 1.5E-44 343.7 24.4 214 79-327 2-225 (275)
248 PRK14252 phosphate ABC transpo 100.0 2.3E-39 4.9E-44 338.7 28.2 222 77-326 14-248 (265)
249 TIGR01193 bacteriocin_ABC ABC- 100.0 1.5E-40 3.2E-45 392.4 21.6 214 79-327 473-697 (708)
250 PRK13549 xylose transporter AT 100.0 4.2E-40 9.1E-45 374.3 24.5 224 78-325 258-492 (506)
251 COG4161 ArtP ABC-type arginine 100.0 1.9E-40 4.2E-45 309.7 17.7 216 79-324 2-227 (242)
252 PRK15134 microcin C ABC transp 100.0 1.3E-39 2.9E-44 372.1 28.6 224 79-327 5-246 (529)
253 PRK03695 vitamin B12-transport 100.0 9.2E-40 2E-44 338.5 24.7 200 115-326 11-221 (248)
254 cd03230 ABC_DR_subfamily_A Thi 100.0 7.6E-40 1.7E-44 320.9 22.7 170 80-316 1-173 (173)
255 TIGR00958 3a01208 Conjugate Tr 100.0 1.6E-40 3.5E-45 391.6 21.3 214 79-327 478-702 (711)
256 COG4172 ABC-type uncharacteriz 100.0 9E-40 2E-44 342.9 24.3 234 76-327 273-516 (534)
257 cd03231 ABC_CcmA_heme_exporter 100.0 1.1E-39 2.4E-44 327.4 23.5 195 80-311 1-198 (201)
258 PRK15134 microcin C ABC transp 100.0 9.5E-40 2.1E-44 373.3 26.1 230 78-326 274-514 (529)
259 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.3E-39 2.9E-44 326.6 23.9 192 80-333 1-199 (200)
260 COG4987 CydC ABC-type transpor 100.0 8.8E-41 1.9E-45 362.9 16.2 215 79-327 336-561 (573)
261 TIGR03269 met_CoM_red_A2 methy 100.0 2.1E-39 4.6E-44 369.8 28.1 224 77-327 277-517 (520)
262 COG4604 CeuD ABC-type enteroch 100.0 4.2E-41 9.1E-46 324.0 11.8 208 112-327 13-225 (252)
263 TIGR01842 type_I_sec_PrtD type 100.0 5.8E-40 1.3E-44 376.3 23.5 218 79-327 316-542 (544)
264 PRK13657 cyclic beta-1,2-gluca 100.0 8.5E-40 1.8E-44 378.3 23.5 214 79-327 334-558 (588)
265 TIGR01189 ccmA heme ABC export 100.0 2.2E-39 4.9E-44 324.2 23.4 194 80-310 1-197 (198)
266 COG1129 MglA ABC-type sugar tr 100.0 2.2E-39 4.8E-44 356.4 25.2 218 76-321 5-228 (500)
267 PRK09544 znuC high-affinity zi 100.0 3.1E-39 6.7E-44 335.1 24.8 202 79-326 4-208 (251)
268 PRK13546 teichoic acids export 100.0 1.2E-38 2.6E-43 332.9 29.2 229 78-327 3-232 (264)
269 PRK09700 D-allose transporter 100.0 1.5E-39 3.2E-44 370.3 24.3 215 78-322 264-493 (510)
270 TIGR02324 CP_lyasePhnL phospho 100.0 4.8E-39 1.1E-43 327.7 25.1 209 80-312 2-223 (224)
271 TIGR02203 MsbA_lipidA lipid A 100.0 1E-39 2.2E-44 376.4 22.7 216 79-327 330-556 (571)
272 cd03229 ABC_Class3 This class 100.0 2.1E-39 4.6E-44 319.2 21.4 171 80-315 1-178 (178)
273 TIGR02633 xylG D-xylose ABC tr 100.0 1.9E-39 4E-44 368.6 23.9 222 78-323 256-488 (500)
274 cd03244 ABCC_MRP_domain2 Domai 100.0 2.8E-39 6.2E-44 328.6 22.5 208 79-321 2-220 (221)
275 TIGR01166 cbiO cobalt transpor 100.0 3.3E-39 7.1E-44 320.8 21.9 176 113-298 5-188 (190)
276 KOG0055 Multidrug/pheromone ex 100.0 1.4E-39 3.1E-44 382.9 22.2 220 79-327 987-1213(1228)
277 cd03248 ABCC_TAP TAP, the Tran 100.0 1.4E-39 3E-44 332.1 19.3 208 78-316 10-226 (226)
278 PRK13540 cytochrome c biogenes 100.0 4.2E-39 9.1E-44 322.8 22.5 193 80-309 2-197 (200)
279 PRK13539 cytochrome c biogenes 100.0 5.6E-39 1.2E-43 323.7 23.3 198 79-313 2-200 (207)
280 cd03215 ABC_Carb_Monos_II This 100.0 5.2E-39 1.1E-43 317.5 22.4 160 115-316 15-182 (182)
281 PRK10938 putative molybdenum t 100.0 2.9E-39 6.3E-44 366.1 23.4 209 79-326 3-223 (490)
282 TIGR01846 type_I_sec_HlyB type 100.0 1.9E-39 4.1E-44 382.1 22.7 216 78-327 454-680 (694)
283 cd03246 ABCC_Protease_Secretio 100.0 4.6E-39 9.9E-44 315.4 21.3 169 80-316 1-173 (173)
284 PTZ00265 multidrug resistance 100.0 1.1E-39 2.4E-44 406.2 21.0 220 79-327 1165-1452(1466)
285 cd03247 ABCC_cytochrome_bd The 100.0 4.7E-39 1E-43 316.6 21.0 175 80-320 1-178 (178)
286 PRK10789 putative multidrug tr 100.0 3.8E-39 8.2E-44 371.4 21.9 215 79-327 313-538 (569)
287 PRK13545 tagH teichoic acids e 100.0 3.6E-38 7.8E-43 350.2 28.8 198 113-329 37-234 (549)
288 cd03288 ABCC_SUR2 The SUR doma 100.0 1.1E-38 2.5E-43 332.0 22.9 215 78-327 18-243 (257)
289 TIGR01192 chvA glucan exporter 100.0 6.9E-39 1.5E-43 370.2 23.3 216 79-327 334-558 (585)
290 TIGR02204 MsbA_rel ABC transpo 100.0 4.9E-39 1.1E-43 371.1 22.1 217 78-327 336-563 (576)
291 TIGR03771 anch_rpt_ABC anchore 100.0 1.3E-38 2.8E-43 324.8 22.3 197 121-326 1-200 (223)
292 PRK10762 D-ribose transporter 100.0 1.3E-38 2.9E-43 361.5 24.4 204 115-325 267-482 (501)
293 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.1E-38 6.8E-43 318.0 24.2 198 79-322 6-207 (207)
294 KOG0056 Heavy metal exporter H 100.0 9.2E-40 2E-44 347.8 13.4 220 78-328 536-762 (790)
295 PRK11288 araG L-arabinose tran 100.0 1.1E-38 2.5E-43 362.1 23.2 204 115-325 268-483 (501)
296 COG0396 sufC Cysteine desulfur 100.0 5.6E-38 1.2E-42 310.1 24.8 233 78-337 2-243 (251)
297 cd03214 ABC_Iron-Siderophores_ 100.0 1.8E-38 3.8E-43 313.2 19.2 175 81-320 1-180 (180)
298 PRK15439 autoinducer 2 ABC tra 100.0 2.9E-38 6.2E-43 359.5 23.7 204 115-325 278-490 (510)
299 COG4148 ModC ABC-type molybdat 100.0 4E-39 8.7E-44 324.7 14.2 195 117-327 15-218 (352)
300 TIGR01187 potA spermidine/putr 100.0 5E-38 1.1E-42 337.8 23.5 187 131-327 1-190 (325)
301 COG3845 ABC-type uncharacteriz 100.0 5.5E-38 1.2E-42 339.0 22.9 216 78-321 3-223 (501)
302 cd03228 ABCC_MRP_Like The MRP 100.0 8.8E-38 1.9E-42 305.7 20.7 167 80-315 1-171 (171)
303 TIGR02868 CydC thiol reductant 100.0 2E-38 4.4E-43 362.4 18.7 187 78-297 333-529 (529)
304 PRK13541 cytochrome c biogenes 100.0 1.5E-37 3.3E-42 310.3 22.5 191 80-308 2-192 (195)
305 PLN03130 ABC transporter C fam 100.0 9.1E-38 2E-42 392.4 25.5 214 79-327 1237-1461(1622)
306 cd03216 ABC_Carb_Monos_I This 100.0 2E-37 4.4E-42 301.0 22.3 157 80-318 1-162 (163)
307 cd03250 ABCC_MRP_domain1 Domai 100.0 1.2E-37 2.5E-42 313.1 21.2 196 80-315 1-204 (204)
308 PLN03232 ABC transporter C fam 100.0 7.5E-38 1.6E-42 392.6 24.5 214 79-327 1234-1458(1495)
309 cd03290 ABCC_SUR1_N The SUR do 100.0 2.1E-37 4.6E-42 314.4 22.4 188 113-315 14-218 (218)
310 TIGR02857 CydD thiol reductant 100.0 4.6E-38 9.9E-43 359.5 19.4 199 79-311 320-529 (529)
311 COG4619 ABC-type uncharacteriz 100.0 1.4E-38 3.1E-43 299.2 12.4 193 112-316 15-212 (223)
312 PRK10535 macrolide transporter 100.0 8.4E-37 1.8E-41 356.1 28.9 220 79-326 4-231 (648)
313 COG4172 ABC-type uncharacteriz 100.0 3.3E-37 7.2E-42 323.6 22.3 229 77-327 4-247 (534)
314 COG4618 ArpD ABC-type protease 100.0 1.2E-37 2.5E-42 335.7 18.8 221 79-330 334-563 (580)
315 PRK10982 galactose/methyl gala 100.0 3.1E-37 6.7E-42 349.6 22.8 216 77-322 248-475 (491)
316 PRK10522 multidrug transporter 100.0 3.7E-37 8E-42 353.4 23.5 204 79-319 322-530 (547)
317 cd03223 ABCD_peroxisomal_ALDP 100.0 5.7E-37 1.2E-41 298.7 21.3 164 80-315 1-164 (166)
318 PRK15064 ABC transporter ATP-b 100.0 7.9E-37 1.7E-41 349.4 26.0 210 80-327 2-242 (530)
319 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.4E-36 3.1E-41 319.8 25.5 204 76-327 36-247 (282)
320 PRK11819 putative ABC transpor 100.0 1.2E-36 2.5E-41 349.6 26.5 213 77-327 4-250 (556)
321 PTZ00243 ABC transporter; Prov 100.0 4.9E-37 1.1E-41 385.2 25.2 214 79-327 1308-1533(1560)
322 TIGR00957 MRP_assoc_pro multi 100.0 4E-37 8.8E-42 386.5 24.4 214 79-327 1284-1508(1522)
323 PRK10938 putative molybdenum t 100.0 4.7E-37 1E-41 348.0 22.5 216 77-320 258-485 (490)
324 COG4674 Uncharacterized ABC-ty 100.0 2.1E-37 4.6E-42 297.9 16.4 221 77-326 3-234 (249)
325 COG4586 ABC-type uncharacteriz 100.0 1.4E-37 2.9E-42 313.2 15.5 243 79-331 3-250 (325)
326 PTZ00265 multidrug resistance 100.0 5.7E-37 1.2E-41 381.9 24.4 213 79-314 382-655 (1466)
327 COG4608 AppF ABC-type oligopep 100.0 7.7E-37 1.7E-41 311.4 20.8 195 78-327 3-199 (268)
328 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.6E-37 2.1E-41 350.4 23.8 210 78-319 336-551 (555)
329 PRK15177 Vi polysaccharide exp 100.0 2.1E-36 4.5E-41 306.5 22.8 194 115-331 2-196 (213)
330 PRK15064 ABC transporter ATP-b 100.0 2.1E-36 4.6E-41 345.8 24.5 204 78-327 318-525 (530)
331 COG1119 ModF ABC-type molybden 100.0 6.1E-37 1.3E-41 306.1 17.3 219 75-321 27-256 (257)
332 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.3E-36 7.1E-41 345.7 25.1 212 78-327 3-248 (552)
333 TIGR01271 CFTR_protein cystic 100.0 2.7E-36 5.9E-41 378.1 25.9 213 79-327 1217-1440(1490)
334 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.6E-36 1.4E-40 309.2 23.5 179 115-315 9-193 (246)
335 PRK11819 putative ABC transpor 100.0 2E-35 4.3E-40 339.5 25.6 206 77-325 322-531 (556)
336 COG5265 ATM1 ABC-type transpor 100.0 1.3E-36 2.9E-41 321.2 13.9 220 76-328 259-487 (497)
337 PRK13409 putative ATPase RIL; 100.0 2.4E-35 5.3E-40 339.1 24.5 198 77-321 338-536 (590)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4E-35 8.7E-40 336.8 25.5 205 78-325 321-529 (552)
339 COG4167 SapF ABC-type antimicr 100.0 2E-35 4.2E-40 281.4 17.2 228 79-327 4-239 (267)
340 COG1134 TagH ABC-type polysacc 100.0 1.2E-34 2.6E-39 290.1 23.6 237 78-332 2-241 (249)
341 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.5E-35 5.4E-40 306.4 19.2 189 114-320 15-220 (255)
342 PRK10636 putative ABC transpor 100.0 8.6E-35 1.9E-39 338.5 24.9 203 78-327 311-517 (638)
343 COG1101 PhnK ABC-type uncharac 100.0 3.4E-35 7.4E-40 286.9 16.8 202 112-320 18-231 (263)
344 PRK11147 ABC transporter ATPas 100.0 1.6E-34 3.6E-39 336.5 24.5 206 77-325 317-526 (635)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.4E-34 5.3E-39 273.8 20.0 144 80-315 1-144 (144)
346 PLN03232 ABC transporter C fam 100.0 2.4E-34 5.1E-39 361.1 24.9 207 79-327 614-828 (1495)
347 PRK10636 putative ABC transpor 100.0 4.3E-34 9.4E-39 332.6 24.2 209 79-326 1-235 (638)
348 PLN03073 ABC transporter F fam 100.0 8.6E-34 1.9E-38 332.0 26.7 207 78-328 507-715 (718)
349 TIGR00954 3a01203 Peroxysomal 100.0 2.6E-34 5.6E-39 335.6 21.6 199 79-313 451-653 (659)
350 cd03238 ABC_UvrA The excision 100.0 5.1E-34 1.1E-38 280.1 19.8 156 113-316 8-166 (176)
351 KOG0059 Lipid exporter ABCA1 a 100.0 1.3E-34 2.7E-39 347.1 18.3 207 115-331 580-791 (885)
352 PLN03130 ABC transporter C fam 100.0 6.5E-34 1.4E-38 357.7 25.1 206 79-327 614-828 (1622)
353 cd03222 ABC_RNaseL_inhibitor T 100.0 7.3E-34 1.6E-38 279.2 19.7 145 112-323 12-159 (177)
354 PRK11147 ABC transporter ATPas 100.0 2.7E-33 5.9E-38 326.2 25.4 207 79-326 3-242 (635)
355 COG4136 ABC-type uncharacteriz 100.0 6.1E-34 1.3E-38 263.4 15.3 177 113-298 15-196 (213)
356 cd00267 ABC_ATPase ABC (ATP-bi 100.0 7.1E-33 1.5E-37 267.0 20.5 141 114-315 13-157 (157)
357 TIGR00957 MRP_assoc_pro multi 100.0 6.7E-33 1.5E-37 348.5 24.1 210 79-327 636-850 (1522)
358 PRK13409 putative ATPase RIL; 100.0 7E-33 1.5E-37 318.8 19.4 186 108-314 81-287 (590)
359 TIGR01271 CFTR_protein cystic 100.0 1.8E-32 3.9E-37 343.7 22.5 192 113-327 439-636 (1490)
360 COG4107 PhnK ABC-type phosphon 100.0 1.2E-32 2.6E-37 260.4 15.0 215 79-327 6-241 (258)
361 COG4133 CcmA ABC-type transpor 100.0 3.3E-32 7.2E-37 261.5 15.0 176 112-299 14-192 (209)
362 COG0488 Uup ATPase components 100.0 1.2E-31 2.7E-36 301.9 21.0 210 78-326 2-239 (530)
363 PLN03073 ABC transporter F fam 100.0 7.3E-32 1.6E-36 315.8 18.1 220 76-326 174-430 (718)
364 PTZ00243 ABC transporter; Prov 100.0 2.5E-31 5.5E-36 333.9 22.0 195 111-327 671-870 (1560)
365 cd03270 ABC_UvrA_I The excisio 100.0 1.4E-30 3.1E-35 266.2 20.5 189 113-320 8-226 (226)
366 COG4778 PhnL ABC-type phosphon 100.0 3.3E-31 7.2E-36 250.0 13.6 214 77-313 2-227 (235)
367 KOG0054 Multidrug resistance-a 100.0 1.1E-30 2.3E-35 314.7 21.4 219 76-327 1135-1362(1381)
368 KOG0054 Multidrug resistance-a 100.0 6.6E-30 1.4E-34 307.8 23.9 209 77-327 516-731 (1381)
369 PF00005 ABC_tran: ABC transpo 100.0 1.5E-30 3.3E-35 244.2 13.5 133 116-266 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 2.3E-29 5E-34 261.4 19.8 193 114-322 9-261 (261)
371 COG1129 MglA ABC-type sugar tr 100.0 1.5E-28 3.2E-33 271.1 21.8 200 115-321 274-484 (500)
372 COG4138 BtuD ABC-type cobalami 100.0 5.3E-30 1.2E-34 242.8 6.9 195 116-326 15-220 (248)
373 COG0488 Uup ATPase components 100.0 2.4E-28 5.2E-33 275.3 21.6 206 76-328 318-526 (530)
374 cd03278 ABC_SMC_barmotin Barmo 100.0 1.3E-28 2.8E-33 246.6 13.1 164 117-313 14-190 (197)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.8E-27 6.1E-32 244.0 14.5 189 108-312 10-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.5E-28 5.4E-33 247.2 3.1 182 108-313 12-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4.2E-27 9E-32 244.3 10.4 183 126-312 25-242 (251)
378 COG3845 ABC-type uncharacteriz 99.9 4E-25 8.6E-30 239.5 21.8 222 76-324 254-489 (501)
379 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.4E-25 3E-30 227.3 15.3 179 117-315 18-210 (213)
380 PRK00635 excinuclease ABC subu 99.9 8.7E-25 1.9E-29 270.1 23.7 138 182-327 759-906 (1809)
381 cd03240 ABC_Rad50 The catalyti 99.9 1.1E-25 2.4E-30 226.6 12.8 165 118-313 15-197 (204)
382 COG4615 PvdE ABC-type sideroph 99.9 2.4E-26 5.3E-31 241.2 7.8 204 79-320 322-530 (546)
383 PRK00349 uvrA excinuclease ABC 99.9 5.6E-24 1.2E-28 253.4 24.3 126 186-327 792-927 (943)
384 COG4178 ABC-type uncharacteriz 99.9 1.8E-24 3.9E-29 243.1 17.2 197 77-312 390-587 (604)
385 COG4170 SapD ABC-type antimicr 99.9 7.9E-25 1.7E-29 213.0 11.5 228 80-327 4-248 (330)
386 KOG0927 Predicted transporter 99.9 5.4E-24 1.2E-28 231.6 14.2 216 77-327 73-309 (614)
387 TIGR00630 uvra excinuclease AB 99.9 6.9E-23 1.5E-27 243.7 22.2 125 185-325 789-923 (924)
388 KOG0927 Predicted transporter 99.9 8.1E-24 1.8E-28 230.2 11.4 206 76-325 386-594 (614)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 7.8E-23 1.7E-27 205.0 14.4 170 115-315 11-192 (198)
390 COG1245 Predicted ATPase, RNas 99.9 3.6E-22 7.8E-27 213.3 16.3 173 116-312 357-530 (591)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.1E-22 2.4E-27 210.7 12.1 179 124-313 21-233 (247)
392 KOG0060 Long-chain acyl-CoA tr 99.9 2.9E-21 6.3E-26 211.8 17.8 206 76-313 430-641 (659)
393 KOG0062 ATPase component of AB 99.9 7.1E-22 1.5E-26 214.1 10.8 190 112-326 92-284 (582)
394 KOG2355 Predicted ABC-type tra 99.9 8.4E-21 1.8E-25 184.6 15.7 212 77-328 11-238 (291)
395 cd03280 ABC_MutS2 MutS2 homolo 99.8 1E-20 2.2E-25 189.9 11.3 154 115-320 16-172 (200)
396 KOG0066 eIF2-interacting prote 99.8 1.9E-20 4.2E-25 198.3 13.1 193 75-313 582-776 (807)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3.5E-20 7.6E-25 187.8 13.3 80 235-315 124-211 (213)
398 PF01061 ABC2_membrane: ABC-2 99.8 1E-21 2.2E-26 195.6 1.4 205 427-633 1-210 (210)
399 KOG0062 ATPase component of AB 99.8 9.1E-20 2E-24 197.9 14.8 207 73-322 356-564 (582)
400 COG1245 Predicted ATPase, RNas 99.8 3.8E-20 8.3E-25 197.9 9.1 171 123-313 97-288 (591)
401 cd03239 ABC_SMC_head The struc 99.8 5.4E-19 1.2E-23 174.3 15.2 74 238-313 95-172 (178)
402 cd03283 ABC_MutS-like MutS-lik 99.8 1.5E-19 3.2E-24 181.4 10.2 148 113-312 14-164 (199)
403 PRK00635 excinuclease ABC subu 99.8 4.3E-18 9.3E-23 211.3 21.6 198 115-327 1505-1796(1809)
404 COG0178 UvrA Excinuclease ATPa 99.8 1.7E-18 3.8E-23 196.3 16.6 128 185-327 783-919 (935)
405 COG2401 ABC-type ATPase fused 99.8 9.9E-19 2.1E-23 185.1 13.2 185 111-317 394-588 (593)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2.8E-19 6.1E-24 182.4 8.8 152 113-321 17-175 (222)
407 cd03241 ABC_RecN RecN ATPase i 99.8 3.1E-18 6.6E-23 180.5 13.5 76 237-315 170-249 (276)
408 KOG0064 Peroxisomal long-chain 99.8 2.1E-18 4.7E-23 187.0 11.7 170 113-299 495-671 (728)
409 cd03227 ABC_Class2 ABC-type Cl 99.8 7.6E-18 1.6E-22 163.5 12.8 74 238-313 78-155 (162)
410 PRK00349 uvrA excinuclease ABC 99.7 2.6E-17 5.6E-22 196.7 15.1 136 184-327 435-585 (943)
411 TIGR00630 uvra excinuclease AB 99.7 5.9E-17 1.3E-21 193.3 16.1 135 184-326 433-582 (924)
412 KOG0066 eIF2-interacting prote 99.7 3.1E-18 6.6E-23 181.7 3.4 216 77-324 262-496 (807)
413 cd03242 ABC_RecF RecF is a rec 99.7 2.5E-16 5.5E-21 165.4 16.9 76 236-316 182-269 (270)
414 cd03243 ABC_MutS_homologs The 99.7 8.3E-17 1.8E-21 161.8 10.8 156 118-325 21-177 (202)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.7 1.6E-16 3.6E-21 159.9 10.4 136 112-298 15-152 (204)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.2E-15 2.6E-20 155.1 10.6 158 113-327 18-181 (216)
417 TIGR02858 spore_III_AA stage I 99.6 2.8E-15 6.1E-20 156.8 10.9 139 127-325 112-267 (270)
418 KOG0063 RNAse L inhibitor, ABC 99.6 1E-14 2.2E-19 155.4 12.7 177 113-312 349-531 (592)
419 PRK00064 recF recombination pr 99.5 1.2E-12 2.6E-17 143.2 18.8 77 236-316 272-359 (361)
420 smart00534 MUTSac ATPase domai 99.4 4.6E-14 9.9E-19 140.1 4.5 79 237-318 61-141 (185)
421 cd03281 ABC_MSH5_euk MutS5 hom 99.4 7.4E-13 1.6E-17 134.4 12.7 132 114-298 17-155 (213)
422 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.9E-13 4.2E-18 138.8 5.1 88 211-312 121-212 (220)
423 TIGR01247 drrB daunorubicin re 99.4 1.1E-10 2.4E-15 119.9 25.2 221 435-683 1-234 (236)
424 cd00820 PEPCK_HprK Phosphoenol 99.4 5.2E-13 1.1E-17 120.0 6.6 72 113-194 2-77 (107)
425 KOG0063 RNAse L inhibitor, ABC 99.4 6.9E-13 1.5E-17 141.6 7.0 187 124-329 98-309 (592)
426 TIGR01069 mutS2 MutS2 family p 99.4 1.3E-12 2.8E-17 154.8 9.9 130 119-298 314-446 (771)
427 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 3.1E-11 6.8E-16 121.5 18.2 149 515-690 58-208 (208)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.3 7.7E-12 1.7E-16 127.5 12.8 134 113-298 18-155 (222)
429 PTZ00132 GTP-binding nuclear p 99.3 2.8E-12 6E-17 129.9 7.4 46 240-285 155-205 (215)
430 PRK07721 fliI flagellum-specif 99.3 2.9E-11 6.3E-16 134.5 14.4 172 113-325 146-341 (438)
431 TIGR00634 recN DNA repair prot 99.3 8.5E-12 1.8E-16 144.1 9.7 77 236-315 439-519 (563)
432 TIGR01291 nodJ ABC-2 type tran 99.2 5.9E-09 1.3E-13 108.6 28.1 230 430-688 8-250 (253)
433 cd01128 rho_factor Transcripti 99.2 2.6E-11 5.6E-16 125.7 10.3 76 235-316 127-211 (249)
434 PRK10869 recombination and rep 99.2 2E-11 4.3E-16 140.2 10.4 77 236-315 429-509 (553)
435 COG0178 UvrA Excinuclease ATPa 99.2 2E-10 4.3E-15 131.6 16.4 138 184-328 427-578 (935)
436 PF13304 AAA_21: AAA domain; P 99.2 2.2E-11 4.8E-16 123.0 6.7 63 236-298 235-300 (303)
437 TIGR00025 Mtu_efflux ABC trans 99.2 7.2E-09 1.5E-13 106.4 24.6 220 440-687 2-230 (232)
438 PRK00409 recombination and DNA 99.2 3.4E-11 7.4E-16 143.1 8.5 81 236-319 389-470 (782)
439 TIGR00618 sbcc exonuclease Sbc 99.2 6.7E-11 1.5E-15 145.9 11.3 80 234-314 947-1036(1042)
440 PHA02562 46 endonuclease subun 99.2 3.7E-11 8E-16 138.9 7.9 78 235-316 466-555 (562)
441 TIGR03861 phenyl_ABC_PedC alco 99.2 2.3E-08 4.9E-13 104.0 27.5 231 426-687 1-250 (253)
442 PRK08533 flagellar accessory p 99.1 2.9E-10 6.4E-15 116.8 12.5 150 122-312 20-184 (230)
443 cd01124 KaiC KaiC is a circadi 99.1 5.4E-10 1.2E-14 110.1 12.5 77 236-312 70-163 (187)
444 cd03286 ABC_MSH6_euk MutS6 hom 99.1 3.9E-10 8.4E-15 114.8 11.5 134 113-298 17-154 (218)
445 PRK13695 putative NTPase; Prov 99.1 8.4E-11 1.8E-15 115.4 4.8 78 237-320 78-157 (174)
446 TIGR02788 VirB11 P-type DNA tr 99.1 3.5E-10 7.7E-15 121.2 9.8 142 119-326 137-280 (308)
447 COG3910 Predicted ATPase [Gene 99.0 1E-09 2.2E-14 106.6 10.5 62 236-298 128-189 (233)
448 PRK15066 inner membrane transp 99.0 2.8E-07 6.1E-12 96.1 29.1 237 425-689 6-253 (257)
449 cd01120 RecA-like_NTPases RecA 99.0 1.1E-09 2.4E-14 104.2 9.4 63 238-300 68-140 (165)
450 PRK03918 chromosome segregatio 99.0 8.7E-10 1.9E-14 134.1 10.1 78 234-313 785-868 (880)
451 PRK10246 exonuclease subunit S 99.0 1.1E-09 2.4E-14 134.7 10.7 79 234-313 946-1032(1047)
452 PRK13830 conjugal transfer pro 99.0 8.6E-09 1.9E-13 123.9 17.7 70 253-322 650-728 (818)
453 cd01131 PilT Pilus retraction 98.9 5.4E-09 1.2E-13 105.0 10.4 57 247-312 66-122 (198)
454 TIGR00606 rad50 rad50. This fa 98.9 3.6E-09 7.8E-14 133.3 9.9 69 236-305 1198-1277(1311)
455 PRK01156 chromosome segregatio 98.9 5.8E-09 1.3E-13 127.2 10.8 77 234-312 798-883 (895)
456 PRK06793 fliI flagellum-specif 98.9 1.1E-08 2.3E-13 113.4 11.1 155 113-321 144-305 (432)
457 PRK06067 flagellar accessory p 98.8 2.6E-08 5.5E-13 102.5 12.1 161 116-313 14-187 (234)
458 TIGR03238 dnd_assoc_3 dnd syst 98.8 4E-09 8.7E-14 116.7 5.0 51 113-166 19-70 (504)
459 TIGR02168 SMC_prok_B chromosom 98.8 6.8E-09 1.5E-13 129.6 7.4 76 234-312 1086-1165(1179)
460 PRK06995 flhF flagellar biosyn 98.8 1.7E-08 3.6E-13 113.4 9.4 150 114-295 244-400 (484)
461 smart00382 AAA ATPases associa 98.8 2.5E-07 5.4E-12 84.6 15.3 118 125-295 1-124 (148)
462 cd01125 repA Hexameric Replica 98.8 4.7E-08 1E-12 100.9 11.3 136 126-298 1-160 (239)
463 PRK02224 chromosome segregatio 98.7 3.3E-08 7.2E-13 120.4 9.3 77 235-313 779-868 (880)
464 COG0842 ABC-type multidrug tra 98.7 1.7E-06 3.7E-11 89.6 20.4 166 501-690 116-284 (286)
465 TIGR02169 SMC_prok_A chromosom 98.7 3.3E-08 7.2E-13 123.5 8.5 76 235-313 1072-1151(1164)
466 TIGR01248 drrC daunorubicin re 98.6 2.1E-06 4.7E-11 82.6 16.3 130 497-629 13-146 (152)
467 TIGR01420 pilT_fam pilus retra 98.6 4.3E-07 9.4E-12 98.9 12.8 124 123-311 119-242 (343)
468 TIGR03881 KaiC_arch_4 KaiC dom 98.6 2.5E-08 5.4E-13 102.0 2.9 164 116-312 9-188 (229)
469 TIGR02655 circ_KaiC circadian 98.6 3.3E-09 7.2E-14 120.5 -4.4 165 116-312 10-190 (484)
470 PRK13891 conjugal transfer pro 98.6 3.9E-07 8.4E-12 110.2 12.9 69 248-317 680-751 (852)
471 TIGR01026 fliI_yscN ATPase Fli 98.5 8.4E-07 1.8E-11 99.1 14.1 174 113-325 151-346 (440)
472 PRK07196 fliI flagellum-specif 98.5 1.1E-07 2.4E-12 105.5 6.2 170 113-319 143-333 (434)
473 TIGR00611 recf recF protein. A 98.5 2.2E-07 4.7E-12 101.9 7.2 59 237-298 275-342 (365)
474 cd01130 VirB11-like_ATPase Typ 98.5 3.7E-07 8E-12 90.7 8.1 81 115-196 14-97 (186)
475 PRK14079 recF recombination pr 98.4 5.7E-07 1.2E-11 98.1 8.1 75 237-319 263-346 (349)
476 PLN03210 Resistant to P. syrin 98.4 1E-06 2.2E-11 110.3 10.3 162 119-334 200-365 (1153)
477 PRK06002 fliI flagellum-specif 98.4 8.9E-07 1.9E-11 98.5 8.3 83 77-181 137-230 (450)
478 COG0419 SbcC ATPase involved i 98.4 1.2E-06 2.6E-11 107.1 10.2 78 234-313 812-897 (908)
479 cd02023 UMPK Uridine monophosp 98.3 4.6E-07 9.9E-12 90.7 5.1 112 128-270 1-113 (198)
480 PRK05399 DNA mismatch repair p 98.3 1E-06 2.2E-11 106.4 8.3 137 114-307 596-738 (854)
481 PRK13898 type IV secretion sys 98.3 1.6E-05 3.5E-10 96.0 18.6 49 251-299 638-687 (800)
482 PRK09825 idnK D-gluconate kina 98.3 6E-07 1.3E-11 88.6 3.7 65 125-194 2-69 (176)
483 TIGR02680 conserved hypothetic 98.2 1.9E-06 4.1E-11 108.9 7.5 59 235-296 1245-1315(1353)
484 cd01122 GP4d_helicase GP4d_hel 98.1 4.5E-05 9.8E-10 80.0 15.2 37 113-149 17-53 (271)
485 PRK06315 type III secretion sy 98.1 5.9E-06 1.3E-10 92.1 8.6 109 113-223 152-277 (442)
486 PRK13873 conjugal transfer ATP 98.1 7.4E-05 1.6E-09 90.5 18.6 47 252-298 632-679 (811)
487 COG1682 TagG ABC-type polysacc 98.1 0.0013 2.9E-08 68.9 24.9 232 425-690 16-257 (263)
488 TIGR00416 sms DNA repair prote 98.1 9.3E-06 2E-10 91.6 9.2 62 254-315 169-247 (454)
489 cd00009 AAA The AAA+ (ATPases 98.1 1.6E-05 3.4E-10 73.4 9.1 55 243-298 72-131 (151)
490 PF12679 ABC2_membrane_2: ABC- 98.1 0.0019 4.1E-08 67.4 25.7 165 502-688 87-275 (277)
491 PF13555 AAA_29: P-loop contai 98.1 5.1E-06 1.1E-10 67.4 4.4 36 116-151 12-48 (62)
492 PRK09270 nucleoside triphospha 98.0 5.6E-06 1.2E-10 85.0 5.9 73 124-198 31-107 (229)
493 TIGR03518 ABC_perm_GldF glidin 98.0 0.0042 9.1E-08 64.4 26.7 153 503-687 71-239 (240)
494 TIGR00152 dephospho-CoA kinase 98.0 5.1E-06 1.1E-10 82.5 4.7 73 240-314 60-133 (188)
495 TIGR00235 udk uridine kinase. 98.0 2.5E-06 5.4E-11 86.2 2.3 27 124-150 4-30 (207)
496 PRK10078 ribose 1,5-bisphospho 98.0 6.8E-06 1.5E-10 81.6 5.1 37 126-166 2-38 (186)
497 PF13558 SbcCD_C: Putative exo 98.0 1.6E-05 3.4E-10 69.7 6.5 47 236-282 31-90 (90)
498 PRK03846 adenylylsulfate kinas 98.0 4.7E-06 1E-10 83.6 3.5 56 124-179 22-77 (198)
499 PRK00454 engB GTP-binding prot 98.0 8.2E-05 1.8E-09 73.5 12.3 46 237-286 147-195 (196)
500 TIGR00767 rho transcription te 97.9 1.8E-05 4E-10 86.6 7.7 52 79-150 130-192 (415)
No 1
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9.5e-109 Score=956.44 Aligned_cols=604 Identities=53% Similarity=0.926 Sum_probs=503.1
Q ss_pred cccCccceEEEEEeEEEEEccCCCCCc------ccccC--CCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 005545 71 LRESLHPVTLKFEDVAYSINLHTSKGS------CFATS--HGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTL 142 (691)
Q Consensus 71 ~~~~~~~~~l~~~~ls~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTL 142 (691)
......++.++|.|++|+++....... +.... .....++++++.+|+|+|+++++||++||+||||||||||
T Consensus 31 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTL 110 (659)
T PLN03211 31 LLSSCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTL 110 (659)
T ss_pred hcCCCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHH
Confidence 334456899999999999975431100 00000 0112345667889999999999999999999999999999
Q ss_pred HHHHHcCCCC-CCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 005545 143 LTALAGRLRG-KFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG 221 (691)
Q Consensus 143 L~~L~G~~~~-~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 221 (691)
||+|+|+.++ ..+|+|.+||+++....++++|||+|++.+++.+||+||+.|++.++.+...+++++.++++++++.+|
T Consensus 111 L~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg 190 (659)
T PLN03211 111 LNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG 190 (659)
T ss_pred HHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC
Confidence 9999998753 258999999999866566789999999999999999999999887776655566677788999999999
Q ss_pred CCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH
Q 005545 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRL 301 (691)
Q Consensus 222 L~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i 301 (691)
|.+++|+++|+...++|||||||||+||++|+.+|+||+|||||+|||+.++.++++.|++++++|+|||+++|||+.++
T Consensus 191 L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i 270 (659)
T PLN03211 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV 270 (659)
T ss_pred ChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH
Confidence 99999999999888999999999999999999999999999999999999999999999999988999999999998778
Q ss_pred HhcCCEEEEecCCeEEEecCHhHHHHHhhhcCCCCCCCCCChHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHH
Q 005545 302 YRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQ 381 (691)
Q Consensus 302 ~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~npad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (691)
+++||++++|++|++++.|+++++.+||+++|++||. +.|||||++|+++....... . .+.+.....+
T Consensus 271 ~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~-~~NpADf~ldv~~~~~~~~~-~----------~~~~~~~~~~ 338 (659)
T PLN03211 271 YQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSF-PMNPADFLLDLANGVCQTDG-V----------SEREKPNVKQ 338 (659)
T ss_pred HHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCC-CCCHHHHHHHHcCccccCCC-c----------cccccchHHH
Confidence 8999999999999999999999999999999999999 89999999999874221100 0 0001111223
Q ss_pred HHHHHHHhhcchhHHHHhhhhc--CCCCC-----CCCCCCCCCCCCccCcHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 005545 382 SLISSYKKNLHPALMAEIQQNV--GDPIA-----SGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVL 454 (691)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 454 (691)
.+.+.|++...+...+.+.... ..... ..+..+. ....+.++||+|+.+|++|+++++|++.+...|+++.+
T Consensus 339 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 417 (659)
T PLN03211 339 SLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRS-SDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVI 417 (659)
T ss_pred HHHHHHHhhccHHHHHHHhhhhhhcchhhhhhccccccccc-CCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4455555433322222211100 00000 0000000 11235678999999999999999999998889999999
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHH
Q 005545 455 SVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVL 534 (691)
Q Consensus 455 ~~all~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~ 534 (691)
++|+++|++||+++.+++++|.|++||+++++++.+++.+++.|+.||++|+||+.+|+|++++|++||+++|+|+.++.
T Consensus 418 ~~~ll~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~ 497 (659)
T PLN03211 418 AAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELIL 497 (659)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhccccCCcchhhh
Q 005545 535 PTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAW 614 (691)
Q Consensus 535 ~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~ip~~~~W 614 (691)
+++|++|+|||+||++++.+|++|++++++..++++++|+++|+++||..+|+.+++++++++++||||++++||+||+|
T Consensus 498 ~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W 577 (659)
T PLN03211 498 PTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAW 577 (659)
T ss_pred HHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCHHHHHHHHHHHHHhCCCc----eeccCCC-----ccccccccccceecCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 005545 615 LKYISFSHYCYKLLVGVQYSANE----VYACGSG-----LHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTL 685 (691)
Q Consensus 615 l~yiSp~~Y~~~~l~~nef~~~~----~~~C~~~-----~~c~~~~~~~~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L 685 (691)
++|+||++||||+++.|||++.. .++|... ..|..... ..++..+.|.|+++|++++++||+++|++|
T Consensus 578 ~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L 654 (659)
T PLN03211 578 IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE---DVAGQISPATSVSVLIFMFVGYRLLAYLAL 654 (659)
T ss_pred HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh---hhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997643 2578532 23432211 122334689999999999999999999999
Q ss_pred HhcCC
Q 005545 686 RMRQP 690 (691)
Q Consensus 686 ~~~~~ 690 (691)
+++++
T Consensus 655 ~~~~~ 659 (659)
T PLN03211 655 RRIKH 659 (659)
T ss_pred HhccC
Confidence 98764
No 2
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-107 Score=935.07 Aligned_cols=577 Identities=46% Similarity=0.783 Sum_probs=503.5
Q ss_pred ccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--
Q 005545 75 LHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-- 152 (691)
Q Consensus 75 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-- 152 (691)
..++.++|+|++++.+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~----------------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~ 84 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEKSK----------------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL 84 (613)
T ss_pred cccceeEEEEEEEEecCCCC----------------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCC
Confidence 35688999999999974321 357899999999999999999999999999999999999853
Q ss_pred CCceEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545 153 KFSGKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231 (691)
Q Consensus 153 ~~~G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 231 (691)
..+|+|++||++... .+++.+|||.|||.++|++||+|+|.|+|.+|+|+..++++++++|+++++++||.+|+|+++|
T Consensus 85 ~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig 164 (613)
T KOG0061|consen 85 KLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIG 164 (613)
T ss_pred cceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceec
Confidence 579999999977654 6788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+...||+||||||||+||.+|++||+||+|||||||||+.++.+++++|+++|++|+|||+|+|||+.+++++||++++|
T Consensus 165 ~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lL 244 (613)
T KOG0061|consen 165 NPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLL 244 (613)
T ss_pred CCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCHhHHHHHhhhcCCCCCCCCCChHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHHhhc
Q 005545 312 SEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNL 391 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~npad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 391 (691)
++|+++|+|+++++.+||++.|++||. +.|||||++|+++.. .+ . ... ............++.
T Consensus 245 s~G~~vy~G~~~~~~~ff~~~G~~~P~-~~Npadf~l~l~s~~-~~-~-~~~-----------~~~~~~~~~~~~~~~-- 307 (613)
T KOG0061|consen 245 SEGEVVYSGSPRELLEFFSSLGFPCPE-LENPADFLLDLLSVD-SG-T-REL-----------EEAVRIAKLINKFSQ-- 307 (613)
T ss_pred cCCcEEEecCHHHHHHHHHhCCCCCCC-cCChHHHHHHHHccC-CC-c-hhH-----------HhHHHHHHHhhhccc--
Confidence 999999999999999999999999999 899999999998853 01 0 000 000011111111110
Q ss_pred chhHHHHhhhhcCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCC-
Q 005545 392 HPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHSDR- 469 (691)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~~- 469 (691)
.....+......... ....+ ......++||.|+++|++|.+++ +|++.+...|+++.+++|+++|++||+.+.
T Consensus 308 ~~~~~~~~~~~~~~~----~~~~~-~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~ 382 (613)
T KOG0061|consen 308 TDNLKKTLEALEKSL----STSKK-VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND 382 (613)
T ss_pred cchhhhhHHHHhhhc----ccccc-cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 000000000000000 00000 01111789999999999999998 688889999999999999999999999977
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCc
Q 005545 470 -SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGL 548 (691)
Q Consensus 470 -~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl 548 (691)
.++++|.|++||++.++.+.+++++++.|++||++|.||+.+|+|+.++||+|++++++|+.++.|++|++|+|||+|+
T Consensus 383 ~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl 462 (613)
T KOG0061|consen 383 AKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGL 462 (613)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccC
Confidence 5778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHH
Q 005545 549 KPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYK 626 (691)
Q Consensus 549 ~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~ 626 (691)
+++..+|++|++++++..++++++|+++|+++||...|+.++++++++|++|+||+++ +||.||+|++|+||++|+||
T Consensus 463 ~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e 542 (613)
T KOG0061|consen 463 NPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFE 542 (613)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHhCCCceeccCCC--ccccccccccceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545 627 LLVGVQYSANEVYACGSG--LHCSVMEFPAIKYLGV--DNKLIDVAALTMMLVGYRLLAYVTLRMRQP 690 (691)
Q Consensus 627 ~l~~nef~~~~~~~C~~~--~~c~~~~~~~~~~~g~--~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~ 690 (691)
+++.|||.+ ....|... ..|...+...++..++ .+.|.|++++++++++||+++|++|++..|
T Consensus 543 ~l~~n~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~ 609 (613)
T KOG0061|consen 543 ALLINQFSG-GSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVK 609 (613)
T ss_pred HHHHHHhhc-cccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999987 46778654 3565555566777776 579999999999999999999999998654
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=9.1e-103 Score=905.04 Aligned_cols=563 Identities=34% Similarity=0.599 Sum_probs=486.2
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CceEEEECCEeCCh-hccccEEEEccCCCCCCCCC
Q 005545 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK--FSGKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLT 187 (691)
Q Consensus 111 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~--~~G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lT 187 (691)
+++.+|+|+|+++++||++||+|||||||||||++|+|+.++. .+|+|.+||++++. ..++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987432 48999999999864 56788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC-CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545 188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP-LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266 (691)
Q Consensus 188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 266 (691)
|+|||.|++.++.+...++++++++++++++.+||.+++|+++|++ ..++|||||||||+||+||+.+|++|+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 9999999998888877777888889999999999999999999975 368999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhhcCCCCCCCCCChHHH
Q 005545 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADF 346 (691)
Q Consensus 267 gLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~npad~ 346 (691)
|||+.++.++++.|++++++|+|||+++|||+.+++++||++++|++|+++|.|+++++.+||+++|++||. +.|||||
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~-~~n~ad~ 274 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPE-NYNPADF 274 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCC-CCChHHH
Confidence 999999999999999999889999999999988899999999999999999999999999999999999999 8999999
Q ss_pred HHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHHhh-cchhHHHHhhhhcCCCCCCCCCCCCCCCCCccCcH
Q 005545 347 LLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKN-LHPALMAEIQQNVGDPIASGKSSRKNCDNEWTASW 425 (691)
Q Consensus 347 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 425 (691)
++|+++....+ +.+.....+.+.+.|++. ...+..+.......................+..+|
T Consensus 275 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (617)
T TIGR00955 275 YVQVLAVIPGS---------------ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASW 339 (617)
T ss_pred HHHHhhcCccc---------------ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCH
Confidence 99998642111 001111223344444432 11222221111110000000000000223567899
Q ss_pred HHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005545 426 WEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHSDR--SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQER 502 (691)
Q Consensus 426 ~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~~--~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR 502 (691)
++|+.+|++|+++. +||+.+...|+++.+++|+++|++||+++. +++++|.|++|++.++++|.+++.++..|+.||
T Consensus 340 ~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er 419 (617)
T TIGR00955 340 WTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAEL 419 (617)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999986 789999999999999999999999999876 689999999999999998888888899999999
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545 503 AMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMD 582 (691)
Q Consensus 503 ~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~ 582 (691)
++|.||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++..||+|++++++..++++++|+++++++|+
T Consensus 420 ~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~ 499 (617)
T TIGR00955 420 PVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSS 499 (617)
T ss_pred HHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCC---cccccccccccee
Q 005545 583 VKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSG---LHCSVMEFPAIKY 657 (691)
Q Consensus 583 ~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~---~~c~~~~~~~~~~ 657 (691)
..+|+.+++++++++++|+||+++ +||+||+|++|+||++|+|++++.|||.+....+|..+ ..|...+...++.
T Consensus 500 ~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~ 579 (617)
T TIGR00955 500 TSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILET 579 (617)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHh
Confidence 999999999999999999999997 99999999999999999999999999988644578642 3587555556677
Q ss_pred cCCC--chHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005545 658 LGVD--NKLIDVAALTMMLVGYRLLAYVTLRMRQ 689 (691)
Q Consensus 658 ~g~~--~~w~~~~iL~~~~~~~~~l~~l~L~~~~ 689 (691)
+|++ +.|.|+++|+++.++|++++|++||+..
T Consensus 580 ~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~ 613 (617)
T TIGR00955 580 LSFRNADLYLDLIGLVILIFFFRLLAYFALRIRI 613 (617)
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7764 6899999999999999999999998743
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-98 Score=931.71 Aligned_cols=602 Identities=26% Similarity=0.406 Sum_probs=492.3
Q ss_pred cceEEEEEeEEEEEccCCCC--Ccc-------cc-cCC-CCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 005545 76 HPVTLKFEDVAYSINLHTSK--GSC-------FA-TSH-GEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLT 144 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~--~~~-------~~-~~~-~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~ 144 (691)
+.+.++|+||+++....... +.. .. ... ...+++..++.+|+|+|+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 46789999999988432211 000 00 000 00122334577999999999999999999999999999999
Q ss_pred HHHcCCC---CCCceEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC----CCCHHHHHHH-H
Q 005545 145 ALAGRLR---GKFSGKITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK----KLTREEKIEQ-A 213 (691)
Q Consensus 145 ~L~G~~~---~~~~G~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~----~~~~~~~~~~-v 213 (691)
+|+|+.. .+.+|+|.+||+++.+ ..++.++||+|+|.+++.+||+|||.|++.++.|. ..+++++.++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 9999863 3579999999998743 34567999999999999999999999998877653 2344554444 4
Q ss_pred HHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEE
Q 005545 214 EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVIT 292 (691)
Q Consensus 214 ~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~ 292 (691)
+++++.+||.+++|+++|+..+++|||||||||+||++|+.+|+|++|||||+|||+.++.++++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999974 999999
Q ss_pred EeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhhcCCCCCCCCCChHHHHHHhhcCCCCCCcccchhhhccccCc
Q 005545 293 TIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEH 372 (691)
Q Consensus 293 ~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~npad~~l~l~~~~~~~~~~~~~~~~~~~~~~ 372 (691)
++|||+.+++++||+|++|++|+++|+|+++++.+||+++||+||+ +.|||||++|+++... +.... ..
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~-~~n~aDfl~~~~~~~~---~~~~~-------~~ 334 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD-RQTTADFLTSLTSPAE---RQIKP-------GY 334 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC-CCChHHHHHhccChhh---hhccc-------cc
Confidence 9999988899999999999999999999999999999999999999 8999999999976421 11000 00
Q ss_pred ccchhHHHHHHHHHHHhhc-chhHHHHhhhhcCC--C----------CCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHH
Q 005545 373 HDDQNATKQSLISSYKKNL-HPALMAEIQQNVGD--P----------IASGKSSRKNCDNEWTASWWEQFKVLLKRGLQE 439 (691)
Q Consensus 373 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~ 439 (691)
+.......+.+.+.|+++. .+...++++..... . ......+.......+..|+|+|+++|++|++++
T Consensus 335 e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~ 414 (1394)
T TIGR00956 335 EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLR 414 (1394)
T ss_pred cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHH
Confidence 0111112334555554321 12222222211000 0 000000001123467889999999999999987
Q ss_pred -hhcchhHHHHHHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCCCCh
Q 005545 440 -RKHESYSYLRIFQVLSVSILSGLLWWHSDR--SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRL 516 (691)
Q Consensus 440 -~r~~~~~~~r~~~~i~~all~G~lf~~~~~--~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~v~~rE~~~g~Y~~ 516 (691)
+||+.++..|+++.+++|+++|++||+++. +++++|.|++||++++.++.++ ..+..++.||+||+||+.+|+|++
T Consensus 415 ~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~ 493 (1394)
T TIGR00956 415 MKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHP 493 (1394)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCH
Confidence 788889999999999999999999999976 6899999999999999888775 567777789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 005545 517 SSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLV 596 (691)
Q Consensus 517 ~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~ 596 (691)
++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++++..+++.++++++|+++||..+|+.++++++++
T Consensus 494 ~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~ 573 (1394)
T TIGR00956 494 SADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLA 573 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCC--------------Cccccccc---------
Q 005545 597 FLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGS--------------GLHCSVME--------- 651 (691)
Q Consensus 597 ~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~--------------~~~c~~~~--------- 651 (691)
+++|+||+++ +||+||+|++|+||++|+||+++.|||++. .++|.. +..|...+
T Consensus 574 ~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~-~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~ 652 (1394)
T TIGR00956 574 LSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGR-RFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVD 652 (1394)
T ss_pred HHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCC-cccccccccCCCCCCCCCccCccccCCCCcCCccccc
Confidence 9999999998 999999999999999999999999999986 689951 34575211
Q ss_pred -cccce-ecCC--CchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545 652 -FPAIK-YLGV--DNKLIDVAALTMMLVGYRLLAYVTLRMRQP 690 (691)
Q Consensus 652 -~~~~~-~~g~--~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~ 690 (691)
...++ .+++ ++.|+|+++|++++++|++++++++.++++
T Consensus 653 G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 653 GDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11122 3444 579999999999999999999999999774
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.9e-97 Score=917.98 Aligned_cols=583 Identities=27% Similarity=0.452 Sum_probs=488.4
Q ss_pred ccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C
Q 005545 75 LHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-K 153 (691)
Q Consensus 75 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~ 153 (691)
..|+.+.|+||+|+++.+.... ..+.+.+++.+|+|||++++|||++||+||||||||||||+|+|+..+ +
T Consensus 863 ~~~~~~~~~~v~y~v~~~~~~~--------~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~ 934 (1470)
T PLN03140 863 FTPLAMSFDDVNYFVDMPAEMK--------EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 934 (1470)
T ss_pred CCcceEEEEEEEEEEccCcccc--------ccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCc
Confidence 3567899999999998543210 011123446799999999999999999999999999999999998642 5
Q ss_pred CceEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 154 FSGKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 154 ~~G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
.+|+|.+||++... ..++.+|||+|+|.+++.+||+|||.|++.++++...+++++.++++++++.+||.+++|+.+|+
T Consensus 935 ~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~ 1014 (1470)
T PLN03140 935 IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL 1014 (1470)
T ss_pred ccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCC
Confidence 78999999998754 45678999999999999999999999998888776666777778899999999999999999998
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+.+++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+
T Consensus 1015 ~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 77789999999999999999999999999999999999999999999999998899999999999877889999999999
Q ss_pred C-CeEEEecCH----hHHHHHhhhc-CCC-CCCCCCChHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHH
Q 005545 313 E-GSPIYSGRA----AQVMDYFGSI-GYV-PGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLIS 385 (691)
Q Consensus 313 ~-G~iv~~G~~----~~~~~~f~~~-g~~-~~~~~~npad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 385 (691)
+ |+++|+|+. +++.+||+++ |++ ||+ +.|||||++|+++... ... ....+.+
T Consensus 1095 ~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~-~~NPAd~~l~v~~~~~---~~~-----------------~~~d~~~ 1153 (1470)
T PLN03140 1095 RGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKE-KYNPATWMLEVSSLAA---EVK-----------------LGIDFAE 1153 (1470)
T ss_pred CCCEEEEECCcccccccHHHHHHhcCCCCCCCC-CCCchhhhhhhhcccc---ccc-----------------ccchHHH
Confidence 6 899999996 6899999998 664 787 8999999999876311 000 0012333
Q ss_pred HHHhhc-chhHHHHhhhhcCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHH
Q 005545 386 SYKKNL-HPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLL 463 (691)
Q Consensus 386 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~l 463 (691)
.|+++. +....+.+....... ...+.. ....+|++|+|+|+.+|++|+++. ||+|.+...|+++.+++|+++|++
T Consensus 1154 ~~~~s~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~ 1230 (1470)
T PLN03140 1154 HYKSSSLYQRNKALVKELSTPP-PGASDL--YFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTI 1230 (1470)
T ss_pred HHhccHHHHHHHHHHHHhccCC-CCcccc--ccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 443321 122222222111100 000000 013467899999999999999986 899999999999999999999999
Q ss_pred hhCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 005545 464 WWHSDR-----SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIF 538 (691)
Q Consensus 464 f~~~~~-----~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if 538 (691)
||+++. .+++++.|++|+++++.++..+...++.|..||++|+|||++|+|++++|++|++++|+|+.++.+++|
T Consensus 1231 f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if 1310 (1470)
T PLN03140 1231 FWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYY 1310 (1470)
T ss_pred hhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999875 367789999999999988877777788999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhh
Q 005545 539 ITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLK 616 (691)
Q Consensus 539 ~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~ 616 (691)
.+|+|||+||++++..||+|+++++++.++++++|+++++++|+.++|+.++++++.++++|+||+++ +||+||+|++
T Consensus 1311 ~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~ 1390 (1470)
T PLN03140 1311 TLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYY 1390 (1470)
T ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred hhCHHHHHHHHHHHHHhCCCceeccCCCc-cc-cccccccceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545 617 YISFSHYCYKLLVGVQYSANEVYACGSGL-HC-SVMEFPAIKYLGV--DNKLIDVAALTMMLVGYRLLAYVTLRMRQP 690 (691)
Q Consensus 617 yiSp~~Y~~~~l~~nef~~~~~~~C~~~~-~c-~~~~~~~~~~~g~--~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~ 690 (691)
|+||++|++++++.|||++. ...|...+ .. ...+....+++|+ ++.|++++++++++++|++++++++|+++.
T Consensus 1391 ~isp~~y~~~~l~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1391 WICPVAWTVYGLIVSQYGDV-EDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred HcCHHHHHHhhhHHHHhCCC-CCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999875 44443110 00 0001112456776 468999999999999999999999998764
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.2e-96 Score=911.06 Aligned_cols=601 Identities=22% Similarity=0.380 Sum_probs=485.2
Q ss_pred ccceEEEEEeEEEEEccCCCCCcc---c----c---c---CCC-CCCccccccceeeceEEEEeCCeEEEEEcCCCCcHH
Q 005545 75 LHPVTLKFEDVAYSINLHTSKGSC---F----A---T---SHG-EPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKT 140 (691)
Q Consensus 75 ~~~~~l~~~~ls~~~~~~~~~~~~---~----~---~---~~~-~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKS 140 (691)
.+.+.++|+||++......+.... . . . ..+ ...|+ .++.||+|+|+.++|||+++|+||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~-~~~~IL~~vs~~i~~Ge~~~llGpnGSGKS 205 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKK-TKLTILKDASGIIKPSRMTLLLGPPSSGKT 205 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCC-ccceeccCCeEEEeCCeEEEEEcCCCCCHH
Confidence 345789999999987632221100 0 0 0 001 01222 357899999999999999999999999999
Q ss_pred HHHHHHHcCCCC--CCceEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-------CCCHHHH-
Q 005545 141 TLLTALAGRLRG--KFSGKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-------KLTREEK- 209 (691)
Q Consensus 141 TLL~~L~G~~~~--~~~G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------~~~~~~~- 209 (691)
||||+|+|++++ ..+|+|.+||+++.+ ..++.++||+|+|.+++.+||+|||.|++.++.+. ..+++++
T Consensus 206 TLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~ 285 (1470)
T PLN03140 206 TLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKD 285 (1470)
T ss_pred HHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHh
Confidence 999999998742 138999999998854 34678999999999999999999999998765321 1112221
Q ss_pred -----------------------HHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545 210 -----------------------IEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266 (691)
Q Consensus 210 -----------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 266 (691)
...++++++.+||++++||.+|+..+++|||||||||+||++|+.+|++|||||||+
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTs 365 (1470)
T PLN03140 286 AGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 365 (1470)
T ss_pred ccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCc
Confidence 123578999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhhcCCCCCCCCCChHH
Q 005545 267 GLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPAD 345 (691)
Q Consensus 267 gLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~npad 345 (691)
|||+.++.++++.|+++++ .|+|+|+++|||..+++++||+|++|++|+++|+|+++++.+||+++||+||+ +.||||
T Consensus 366 GLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~-~~n~AD 444 (1470)
T PLN03140 366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPE-RKGTAD 444 (1470)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCC-CCChHH
Confidence 9999999999999999987 58999999999988899999999999999999999999999999999999999 899999
Q ss_pred HHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHHhhc-chhHHHHhhhhcCCCCCCCCCCCCCCCCCccCc
Q 005545 346 FLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNL-HPALMAEIQQNVGDPIASGKSSRKNCDNEWTAS 424 (691)
Q Consensus 346 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 424 (691)
|++|+++..... . .+... .... .....+.+.++|++.. ...+.+++....+... ..+.......|..+
T Consensus 445 Fl~~v~s~~~~~--~----~~~~~-~~p~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~y~~s 513 (1470)
T PLN03140 445 FLQEVTSKKDQE--Q----YWADR-NKPY-RYISVSEFAERFKSFHVGMQLENELSVPFDKSQ---SHKAALVFSKYSVP 513 (1470)
T ss_pred HHHHhcCchhhh--h----hhhcc-CCcc-ccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhh---cccccccCCCCcCC
Confidence 999998741110 0 00000 0000 0012345666776532 2233333322111000 00011123468899
Q ss_pred HHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545 425 WWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHSDR-----SHIQDQVGLLFFFSIFWGFFPLNNAIFVF 498 (691)
Q Consensus 425 ~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~~-----~~~~~r~g~lff~~~~~~~~~~~~~i~~f 498 (691)
++.|++.|++|+++. +||+..+..|+++.+++|+++|++||+++. .+.+.+.|++||++++.++.+ +..+..+
T Consensus 514 ~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~ 592 (1470)
T PLN03140 514 KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNG-FAELALM 592 (1470)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999987 688888899999999999999999999853 345778899999988887655 5778899
Q ss_pred HHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545 499 PQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGA 578 (691)
Q Consensus 499 ~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a 578 (691)
+.||+||+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++++++++
T Consensus 593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a 672 (1470)
T PLN03140 593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672 (1470)
T ss_pred HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceec-cCCCccccccccccc
Q 005545 579 IIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYA-CGSGLHCSVMEFPAI 655 (691)
Q Consensus 579 ~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~-C~~~~~c~~~~~~~~ 655 (691)
++|+..+|+.+++++++++++|+||+|+ +||+||+|++|+||++|||+|++.|||.+. .+. |.....+...+...+
T Consensus 673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~-~~~~~~~~~~~~~~G~~~L 751 (1470)
T PLN03140 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP-RWMNKMASDNSTRLGTAVL 751 (1470)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCc-cccCcccCCCCcccHHHHH
Confidence 9999999999999999999999999998 999999999999999999999999999775 332 210011122233345
Q ss_pred eecCCC----chHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545 656 KYLGVD----NKLIDVAALTMMLVGYRLLAYVTLRMRQP 690 (691)
Q Consensus 656 ~~~g~~----~~w~~~~iL~~~~~~~~~l~~l~L~~~~~ 690 (691)
+.+|+. ..|+++++|++++++|++++|++|+++++
T Consensus 752 ~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 752 NIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred HhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 666753 35999999999999999999999998763
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.5e-95 Score=901.79 Aligned_cols=569 Identities=27% Similarity=0.443 Sum_probs=476.4
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCc
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--KFS 155 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~~~ 155 (691)
..|+|+||+|+++.+. +++.+|+|||+++++||++||+||||||||||||+|+|+.++ +.+
T Consensus 758 ~~l~~~nl~~~~~~~~-----------------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~ 820 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK-----------------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820 (1394)
T ss_pred ceEEEEeeEEEecCCC-----------------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcce
Confidence 4689999999986321 135699999999999999999999999999999999998742 567
Q ss_pred eEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545 156 GKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235 (691)
Q Consensus 156 G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 235 (691)
|+|.+||+++...+++.+|||+|++.+++.+||+|||.|++.++.|...+++++.++++++++.+||.+++|+.+|+..
T Consensus 821 G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~- 899 (1394)
T TIGR00956 821 GDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG- 899 (1394)
T ss_pred eEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-
Confidence 9999999998766788999999999999999999999999888877666777777889999999999999999998543
Q ss_pred cccCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 236 RGISGGERKRVSIGQEMLVNPS-CLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~-iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
++|||||||||+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++|
T Consensus 900 ~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~G 979 (1394)
T TIGR00956 900 EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979 (1394)
T ss_pred CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCC
Confidence 4899999999999999999997 999999999999999999999999999889999999999987778899999999997
Q ss_pred -eEEEecCH----hHHHHHhhhcCC-CCCCCCCChHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHH
Q 005545 315 -SPIYSGRA----AQVMDYFGSIGY-VPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYK 388 (691)
Q Consensus 315 -~iv~~G~~----~~~~~~f~~~g~-~~~~~~~npad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (691)
+++|.|++ +++.+||++.|+ +||+ +.|||||++|+++..... .. .+.+.+.|+
T Consensus 980 G~iv~~G~~~~~~~~~~~yf~~~G~~~~p~-~~NpAd~~ldvi~~~~~~---~~-----------------~~~~~~~~~ 1038 (1394)
T TIGR00956 980 GQTVYFGDLGENSHTIINYFEKHGAPKCPE-DANPAEWMLEVIGAAPGA---HA-----------------NQDYHEVWR 1038 (1394)
T ss_pred CEEEEECCcccccchHHHHHHhcCCCCCCC-CCCHHHHHHHHhhccccc---ch-----------------hccHHHHHh
Confidence 99999997 678999999996 8998 899999999997641111 00 011223333
Q ss_pred hh-cchhHHHHhhhhcCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhC
Q 005545 389 KN-LHPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWH 466 (691)
Q Consensus 389 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~ 466 (691)
.+ ......++++...................++++|||+|+++|++|++++ ||++.+...|+++.+++|+++|++||+
T Consensus 1039 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~ 1118 (1394)
T TIGR00956 1039 NSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFK 1118 (1394)
T ss_pred cCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 21 1111122222111100000000000012467899999999999999986 899999999999999999999999999
Q ss_pred CCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005545 467 SDR--SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAML-IKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAY 543 (691)
Q Consensus 467 ~~~--~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~v~-~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y 543 (691)
++. .++|+|+|++|+++++..+. +...++.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|++|+|
T Consensus 1119 ~~~~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y 1197 (1394)
T TIGR00956 1119 VGTSLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWY 1197 (1394)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 976 68999999999988877654 456778898988886 99999999999999999999999999999999999999
Q ss_pred cccCccccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhh
Q 005545 544 WMGGLKPSLIT-------FLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAW 614 (691)
Q Consensus 544 ~m~Gl~~~~~~-------F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W 614 (691)
||+||++++.. |++|++++++..++++++|+++++++|+..+|+.++++++.++++|+||+++ +||.||+|
T Consensus 1198 ~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w 1277 (1394)
T TIGR00956 1198 YPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIF 1277 (1394)
T ss_pred ecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhH
Confidence 99999988765 9999999999999999999999999999999999999999999999999998 99999999
Q ss_pred hhhhCHHHHHHHHHHHHHhCCCceeccCC----------Ccccc---------------------------c-cccccce
Q 005545 615 LKYISFSHYCYKLLVGVQYSANEVYACGS----------GLHCS---------------------------V-MEFPAIK 656 (691)
Q Consensus 615 l~yiSp~~Y~~~~l~~nef~~~~~~~C~~----------~~~c~---------------------------~-~~~~~~~ 656 (691)
++|+||++|++++++.|||.+. .++|.+ +.+|. . .+...++
T Consensus 1278 ~~~~sp~~y~~~~l~~~~~~~~-~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~ 1356 (1394)
T TIGR00956 1278 MYRCSPFTYLVQALLSTGLADV-PVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE 1356 (1394)
T ss_pred HHhcCHHHHHHHHHHHHHcCCC-eeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH
Confidence 9999999999999999999886 677754 23442 1 1112234
Q ss_pred ecC--CCchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005545 657 YLG--VDNKLIDVAALTMMLVGYRLLAYVTLRMR 688 (691)
Q Consensus 657 ~~g--~~~~w~~~~iL~~~~~~~~~l~~l~L~~~ 688 (691)
.++ .++.|+|+++++++++++ ++++++|++.
T Consensus 1357 ~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1357 PISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred HcCCcccccccchhhhhHHHHHH-HHHHHhhheE
Confidence 344 467999999999999999 8888888664
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-92 Score=823.78 Aligned_cols=508 Identities=31% Similarity=0.504 Sum_probs=447.5
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCceEEEECCEeCC-hhccccEEEEccCCCCCCCCCH
Q 005545 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGKITYNGRQFS-SSLKRKTGFVTQDDVLYPHLTV 188 (691)
Q Consensus 111 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G~I~~~G~~~~-~~~~~~igyv~Q~~~l~~~lTV 188 (691)
+++++|+|||+.++||.++||||+||||||||||+|+||.. +..+|+|++||.+.. +.++|.+|||.|+|.|.+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 45789999999999999999999999999999999999964 567999999999998 6789999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCC-CEEEEeCCCCC
Q 005545 189 LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNP-SCLLLDEPTSG 267 (691)
Q Consensus 189 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P-~iLlLDEPtsg 267 (691)
+|.|.|+|.+|+|.+.+.+++.+.|+++++.++|++++|..||.+. +|||.+||||++||.+|+.+| .||+|||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 9999999999999999999999999999999999999999999987 999999999999999999999 89999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC-CeEEEecCHh----HHHHHhhhcC-CCCCCCCC
Q 005545 268 LDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE-GSPIYSGRAA----QVMDYFGSIG-YVPGFNLL 341 (691)
Q Consensus 268 LD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~-G~iv~~G~~~----~~~~~f~~~g-~~~~~~~~ 341 (691)
||+.++..|++.+|+++++|+|||||+|||+.++++.||++++|++ |+.||.|+.. .+++||+++| .+|+. ..
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~-~~ 1039 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCIS-DE 1039 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCC-CC
Confidence 9999999999999999999999999999999999999999999987 8999999864 4778999987 67887 56
Q ss_pred ChHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHHhh-cchhHHHHhhhhcCCCCCCCCCCCCCCCCC
Q 005545 342 NPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKN-LHPALMAEIQQNVGDPIASGKSSRKNCDNE 420 (691)
Q Consensus 342 npad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (691)
|||||++|++...... . ....+.+.|+++ .++..++++......... .........+
T Consensus 1040 NPA~~mLevi~~~~~~--~------------------~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~--~~~~~~~~~~ 1097 (1391)
T KOG0065|consen 1040 NPAEWMLEVIGAGAEA--S------------------LSVDFAEIWKNSEEYKRNKELVKELSQPPPG--FSTDLEFKTR 1097 (1391)
T ss_pred ChHHHHHhhccccccc--c------------------cCccHHHHHhccHHHHHHHHHHHHHhcCCcc--CCcccccccc
Confidence 9999999997641111 0 011234445542 233344444433321111 0111113456
Q ss_pred ccCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545 421 WTASWWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHSDR--SHIQDQVGLLFFFSIFWGFFPLNNAIFV 497 (691)
Q Consensus 421 ~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~~--~~~~~r~g~lff~~~~~~~~~~~~~i~~ 497 (691)
|++|+|.|++.+++|++.. ||+|.+..+|++..++.|+++|+.||+.+. .++||.+|++|+.+++.+....-.....
T Consensus 1098 fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~ 1177 (1391)
T KOG0065|consen 1098 FAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPA 1177 (1391)
T ss_pred cchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Confidence 8999999999999999875 899999999999999999999999999987 7999999999998887643222123456
Q ss_pred HHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545 498 FPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLG 577 (691)
Q Consensus 498 f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~ 577 (691)
+..||.+++||+++|+|++.+|++|++++|+|+.++++++|.+++|+|+|+..++.+|+.|++.+++..++.+.+|+++.
T Consensus 1178 v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~ 1257 (1391)
T KOG0065|consen 1178 VATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLV 1257 (1391)
T ss_pred HhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCC
Q 005545 578 AIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGS 643 (691)
Q Consensus 578 a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~ 643 (691)
+++||.++|..+++.+..++.+|+|++++ .||.||+|++|+||+.|..++++..++++. ...|..
T Consensus 1258 s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~-~v~c~~ 1324 (1391)
T KOG0065|consen 1258 SLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDV-EVTCED 1324 (1391)
T ss_pred HhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCC-ceeeec
Confidence 99999999999999999999999999998 999999999999999999999999999975 567864
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-86 Score=776.48 Aligned_cols=565 Identities=29% Similarity=0.510 Sum_probs=477.6
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEEECCEeCChh-ccccEEEEccCCCCCCCCCH
Q 005545 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--KFSGKITYNGRQFSSS-LKRKTGFVTQDDVLYPHLTV 188 (691)
Q Consensus 112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~~~G~I~~~G~~~~~~-~~~~igyv~Q~~~l~~~lTV 188 (691)
...+|+|+|+.++|||++.++||+||||||||++|+|.++. ...|+|.+||++.++. .++.++|+.|+|.|+|+|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 45799999999999999999999999999999999997642 2368999999998763 36789999999999999999
Q ss_pred HHHHHHHHhhcCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005545 189 LETLSYAALLRLPKK----LTREEKIE-QAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDE 263 (691)
Q Consensus 189 ~E~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDE 263 (691)
+|+|.|+++++.+.. .++.++.+ ..+.+++.+||++|+||+||+..+||+||||||||+||..++.+++++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999988732 33344333 5678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhhcCCCCCCCCCC
Q 005545 264 PTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLN 342 (691)
Q Consensus 264 PtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~n 342 (691)
+|+|||+.++.++++.||++++ .+.|++++.|||+++++++||+|++|++|+++|+||.+++++||+++||.||+ +.+
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~-r~~ 365 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPP-RKG 365 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCC-ccC
Confidence 9999999999999999999998 48999999999999999999999999999999999999999999999999999 899
Q ss_pred hHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHHhh-cchhHHHHhhhhcCCCCCCCCCCCCCCCCCc
Q 005545 343 PADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKN-LHPALMAEIQQNVGDPIASGKSSRKNCDNEW 421 (691)
Q Consensus 343 pad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (691)
+|||+.++++.. +..+. +..+ ..........++.+.|.+. .+..+..+++...+... ..++....++|
T Consensus 366 ~ADfLt~vts~k--~~~~~----~~~~--~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k---~~~~al~s~~y 434 (1391)
T KOG0065|consen 366 TADFLTEVTSKK--DQEQY----WNKR--SKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSK---KHKAALVSSKY 434 (1391)
T ss_pred HHHHHHHhhcCc--ccccc----cccc--CCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhh---ccchhhcCCce
Confidence 999999998731 11110 0000 0001111224455555542 23344444432221110 11111145678
Q ss_pred cCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCC-C--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545 422 TASWWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHSD-R--SHIQDQVGLLFFFSIFWGFFPLNNAIFV 497 (691)
Q Consensus 422 ~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~-~--~~~~~r~g~lff~~~~~~~~~~~~~i~~ 497 (691)
..+.|.|++.|++|.+.. .||..++..++++.+++|+++|++|++.+ . .+.+.|.|++||.+++.++.++ ..+..
T Consensus 435 ~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~l-aEi~~ 513 (1391)
T KOG0065|consen 435 SVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGL-AEIAL 513 (1391)
T ss_pred eccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhH-HHHHH
Confidence 999999999999999976 56667778899999999999999999987 4 5689999999999999887665 56766
Q ss_pred HHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545 498 FPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLG 577 (691)
Q Consensus 498 f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~ 577 (691)
..+.||||+|||...+|+++||.++.+++++|+.++..++|.+|+||++||++++++||.++++++++++++.+++++++
T Consensus 514 ~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia 593 (1391)
T KOG0065|consen 514 TFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIA 593 (1391)
T ss_pred HHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCC-----------C
Q 005545 578 AIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGS-----------G 644 (691)
Q Consensus 578 a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~-----------~ 644 (691)
+++++...|++++++.++++.+++||+|+ +||+||+|++|+||+.||||+++.|||.++ .+.|.+ +
T Consensus 594 ~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~-~~~c~p~gp~y~n~~~~~ 672 (1391)
T KOG0065|consen 594 SLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGR-RWPCSPSGPAYDNISIEN 672 (1391)
T ss_pred HhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcc-cCCCCCCCCccccccccc
Confidence 99999999999999999999999999998 999999999999999999999999999986 788972 2
Q ss_pred ccccc-cccccceec------------CCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545 645 LHCSV-MEFPAIKYL------------GVDNKLIDVAALTMMLVGYRLLAYVTLRMRQP 690 (691)
Q Consensus 645 ~~c~~-~~~~~~~~~------------g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~ 690 (691)
..|.. +..++.+.+ ...+.|+++++++|+.++|.++..+++-|+++
T Consensus 673 ~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p 731 (1391)
T KOG0065|consen 673 KVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKP 731 (1391)
T ss_pred ccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCc
Confidence 35642 222222211 13468999999999999999999999988774
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-53 Score=416.96 Aligned_cols=219 Identities=34% Similarity=0.564 Sum_probs=199.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+++|. ...+|+|||++|++||+++|+||||||||||||+|.++. .+++|+|
T Consensus 2 mi~i~~l~K~fg---------------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-~~~~G~I 59 (240)
T COG1126 2 MIEIKNLSKSFG---------------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-EPDSGSI 59 (240)
T ss_pred eEEEEeeeEEeC---------------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-CCCCceE
Confidence 588999999886 356999999999999999999999999999999999965 5789999
Q ss_pred EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|+++.. .+|+++|+|||+..|||++||.||+..+... -++.++++.++++.++|+++||.+.+|.+.
T Consensus 60 ~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~--v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP--- 134 (240)
T COG1126 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK--VKKLSKAEAREKALELLEKVGLADKADAYP--- 134 (240)
T ss_pred EECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH--HcCCCHHHHHHHHHHHHHHcCchhhhhhCc---
Confidence 999987642 4788999999999999999999999987532 235688899999999999999999998765
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
.+|||||||||+|||||+.+|+++++|||||+|||....++++.+++|+++|.|+|++||++. .+.+.+|||++|++
T Consensus 135 --~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~ 211 (240)
T COG1126 135 --AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQ 211 (240)
T ss_pred --cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeC
Confidence 579999999999999999999999999999999999999999999999999999999999965 68899999999999
Q ss_pred CeEEEecCHhHHHH
Q 005545 314 GSPIYSGRAAQVMD 327 (691)
Q Consensus 314 G~iv~~G~~~~~~~ 327 (691)
|++++.|++++++.
T Consensus 212 G~iie~g~p~~~f~ 225 (240)
T COG1126 212 GKIIEEGPPEEFFD 225 (240)
T ss_pred CEEEEecCHHHHhc
Confidence 99999999998854
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-51 Score=415.72 Aligned_cols=223 Identities=29% Similarity=0.463 Sum_probs=201.6
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||++.|... ..+...+|+|||++|++||+++|+|.||||||||+|++.++. .|++|+|
T Consensus 1 mI~l~~vsK~~~~~----------------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le-~PtsG~v 63 (339)
T COG1135 1 MIELENVSKTFGQT----------------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE-RPTSGSV 63 (339)
T ss_pred CeEEEeeeeeeccC----------------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC-CCCCceE
Confidence 47999999998742 112356999999999999999999999999999999999865 5789999
Q ss_pred EECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545 159 TYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231 (691)
Q Consensus 159 ~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 231 (691)
.++|+++.. ..|++||++||++.|+...||+||+.|+..+. +.++++++++|.++++.+||++..+.+.
T Consensus 64 ~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP- 139 (339)
T COG1135 64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP- 139 (339)
T ss_pred EEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-
Confidence 999988753 46789999999999999999999999997765 4678999999999999999999888765
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEE
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
.+|||||||||+|||||+.+|+|||+|||||+|||.+.+.|+++|+++.++ |.||+++||++ +.+.++||||.+
T Consensus 140 ----~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVav 214 (339)
T COG1135 140 ----AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAV 214 (339)
T ss_pred ----hhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheE
Confidence 479999999999999999999999999999999999999999999999875 99999999996 578999999999
Q ss_pred ecCCeEEEecCHhHHHH
Q 005545 311 LSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 311 L~~G~iv~~G~~~~~~~ 327 (691)
|++|++++.|+..+++.
T Consensus 215 m~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 215 LDQGRLVEEGTVSEVFA 231 (339)
T ss_pred eeCCEEEEeccHHHhhc
Confidence 99999999999998854
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-50 Score=399.63 Aligned_cols=218 Identities=28% Similarity=0.517 Sum_probs=198.6
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+|+|||+.|. .+.+++|+|++|++||+++++|||||||||+||+|.+++ .|++|+|
T Consensus 1 MI~~~nvsk~y~---------------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi-ept~G~I 58 (309)
T COG1125 1 MIEFENVSKRYG---------------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI-EPTSGEI 58 (309)
T ss_pred CceeeeeehhcC---------------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc-CCCCceE
Confidence 478999998886 256999999999999999999999999999999999977 4789999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR--CRNSVVGG 232 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~ 232 (691)
++||+++.. ++|++||||-|+-.|||++||.||+.+...+. +.++++.+++++++++.+||+. ..++
T Consensus 59 ~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~R---- 131 (309)
T COG1125 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADR---- 131 (309)
T ss_pred EECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhc----
Confidence 999999864 68999999999999999999999999876553 5678889999999999999974 4444
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
++.+|||||+|||.+||||+.+|++|++|||+++|||.++.++-+.+++++++ |+|||++|||. +++++++|||.+|
T Consensus 132 -yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm 209 (309)
T COG1125 132 -YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVM 209 (309)
T ss_pred -CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEe
Confidence 45689999999999999999999999999999999999999999999999975 99999999996 5688999999999
Q ss_pred cCCeEEEecCHhHHHH
Q 005545 312 SEGSPIYSGRAAQVMD 327 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~~ 327 (691)
++|+++..++|++++.
T Consensus 210 ~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 210 DAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCeEEEeCCHHHHHh
Confidence 9999999999999954
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-48 Score=412.73 Aligned_cols=225 Identities=37% Similarity=0.593 Sum_probs=200.2
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.++++||++.|.. .+.+|+||||+|++||++||+||||||||||+|+|+|++. |++|+|
T Consensus 4 ~i~~~~l~k~~~~--------------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-p~~G~i 62 (293)
T COG1131 4 VIEVRNLTKKYGG--------------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEI 62 (293)
T ss_pred eeeecceEEEeCC--------------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCceEE
Confidence 4678888888861 2569999999999999999999999999999999999874 689999
Q ss_pred EECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545 159 TYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235 (691)
Q Consensus 159 ~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 235 (691)
.++|.+... ..++++||++|++.+++.+||+|+|.|.+.++... .....++++++++.+||.+..++++
T Consensus 63 ~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~----- 134 (293)
T COG1131 63 LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKV----- 134 (293)
T ss_pred EEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcch-----
Confidence 999998864 56789999999999999999999999998887432 2455678999999999998555555
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG-RTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
++||+|||||++||+||+++|++|||||||+||||.++.++.++|++++++| +||++|||++. ++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCC
Confidence 5799999999999999999999999999999999999999999999999987 89999999975 688899999999999
Q ss_pred eEEEecCHhHHHHHhhhcC
Q 005545 315 SPIYSGRAAQVMDYFGSIG 333 (691)
Q Consensus 315 ~iv~~G~~~~~~~~f~~~g 333 (691)
++++.|+++++...+....
T Consensus 214 ~~~~~g~~~~l~~~~~~~~ 232 (293)
T COG1131 214 KIIAEGTPEELKEKFGGKG 232 (293)
T ss_pred EEEEeCCHHHHHHhhccCc
Confidence 9999999999887765543
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1e-48 Score=388.48 Aligned_cols=221 Identities=33% Similarity=0.498 Sum_probs=199.6
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
...|++++|++++. .+.|++|||++|++||+++||||||||||||||+|.|++ .|++|
T Consensus 6 ~~~I~vr~v~~~fG---------------------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll-~P~~G 63 (263)
T COG1127 6 EPLIEVRGVTKSFG---------------------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL-RPDKG 63 (263)
T ss_pred cceEEEeeeeeecC---------------------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC-CCCCC
Confidence 46799999999885 357999999999999999999999999999999999988 47899
Q ss_pred EEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccc
Q 005545 157 KITYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-RNS 228 (691)
Q Consensus 157 ~I~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~ 228 (691)
+|+++|+++.. ..++++|++||+..||..+||+||+.|..+- ....+++..++.+..-|+.+||... .+.
T Consensus 64 eI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre--~~~lp~~~i~~lv~~KL~~VGL~~~~~~~ 141 (263)
T COG1127 64 EILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE--HTKLPESLIRELVLMKLELVGLRGAAADL 141 (263)
T ss_pred eEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh--hccCCHHHHHHHHHHHHHhcCCChhhhhh
Confidence 99999998752 4678999999999999999999999997643 3457788888889999999999865 443
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~ 307 (691)
++.+|||||+||++||||++.||++|++||||+||||.++..+.+++++|.+. |.|++++|||.. .++.+|||
T Consensus 142 -----~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Dr 215 (263)
T COG1127 142 -----YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADR 215 (263)
T ss_pred -----CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhce
Confidence 45689999999999999999999999999999999999999999999999985 999999999965 68999999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|.+|+++..|+++++.+
T Consensus 216 v~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 216 VAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999865
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-48 Score=399.76 Aligned_cols=220 Identities=33% Similarity=0.481 Sum_probs=194.3
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+.+||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|.+ +|.+|+|
T Consensus 2 ~L~~~~ls~~y~---------------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l-~p~~G~V 59 (258)
T COG1120 2 MLEVENLSFGYG---------------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL-KPKSGEV 59 (258)
T ss_pred eeEEEEEEEEEC---------------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC-CCCCCEE
Confidence 589999999997 256999999999999999999999999999999999987 4679999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|+++.. ++.+.+|||||.......+||+|.+.++..-... .....+++++.+++.|+.+|+.+.+++.+.
T Consensus 60 ~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-- 137 (258)
T COG1120 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-- 137 (258)
T ss_pred EECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc--
Confidence 999999853 5678999999999888899999999887431111 011234445589999999999999998774
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+|||||||||.|||||+.+|++|+||||||.||..++.+++++++++++ +|+|||+++||++ .+.++||++++|+
T Consensus 138 ---~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk 213 (258)
T COG1120 138 ---ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLK 213 (258)
T ss_pred ---ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999999995 5999999999986 5789999999999
Q ss_pred CCeEEEecCHhHHH
Q 005545 313 EGSPIYSGRAAQVM 326 (691)
Q Consensus 313 ~G~iv~~G~~~~~~ 326 (691)
+|+++..|++++++
T Consensus 214 ~G~i~a~G~p~evl 227 (258)
T COG1120 214 DGKIVAQGTPEEVL 227 (258)
T ss_pred CCeEEeecCcchhc
Confidence 99999999998875
No 16
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-48 Score=415.24 Aligned_cols=221 Identities=31% Similarity=0.517 Sum_probs=201.2
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
...|+++||+++|. ...+|+|+|++|++||+++|+||||||||||||+|+|+. .|++|
T Consensus 3 ~~~l~i~~v~k~yg---------------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~p~~G 60 (352)
T COG3842 3 KPALEIRNVSKSFG---------------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-QPSSG 60 (352)
T ss_pred CceEEEEeeeeecC---------------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCc
Confidence 35689999999886 246999999999999999999999999999999999976 57899
Q ss_pred EEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 157 KITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 157 ~I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
+|.++|++++. ..+|.+|+|||+..|||+|||+||+.|+.+.+ +...+++.+++++++++.++|++..++++
T Consensus 61 ~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p---- 134 (352)
T COG3842 61 EILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP---- 134 (352)
T ss_pred eEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh----
Confidence 99999999975 56889999999999999999999999997633 44566778889999999999999888766
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
.+|||||||||+|||||+.+|++||||||.|+||..-+.++...|+++.+ .|.|.|++|||. +++..++|||.+|++
T Consensus 135 -~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~ 212 (352)
T COG3842 135 -HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMND 212 (352)
T ss_pred -hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccC
Confidence 47999999999999999999999999999999999999999999999987 499999999996 568899999999999
Q ss_pred CeEEEecCHhHHHH
Q 005545 314 GSPIYSGRAAQVMD 327 (691)
Q Consensus 314 G~iv~~G~~~~~~~ 327 (691)
|+|...|+++++..
T Consensus 213 G~I~Q~gtP~eiY~ 226 (352)
T COG3842 213 GRIEQVGTPEEIYE 226 (352)
T ss_pred CceeecCCHHHHhh
Confidence 99999999999943
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-48 Score=410.53 Aligned_cols=219 Identities=32% Similarity=0.503 Sum_probs=201.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|.. ..+|+|+|++|++||+++|+||||||||||||+|||+. .+++|+|
T Consensus 3 ~i~l~~v~K~yg~---------------------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~~~~G~I 60 (338)
T COG3839 3 ELELKNVRKSFGS---------------------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-EPTSGEI 60 (338)
T ss_pred EEEEeeeEEEcCC---------------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceE
Confidence 6899999999872 12899999999999999999999999999999999976 5789999
Q ss_pred EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
.++|++++. ..+|.|++|||+..|||+|||+||+.|+.+.+ +.++++.+++++++.+.++|++..|++. +
T Consensus 61 ~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~ 132 (338)
T COG3839 61 LIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----L 132 (338)
T ss_pred EECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----c
Confidence 999999975 45789999999999999999999999998765 5578888999999999999999999876 5
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
+|||||||||+|||||+.+|+++|+|||+|.||+..+..+...|+++.++ |.|+|++|||. .++..++||+.+|++|+
T Consensus 133 ~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~ 211 (338)
T COG3839 133 QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGR 211 (338)
T ss_pred cCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCe
Confidence 79999999999999999999999999999999999999999999999875 89999999996 56889999999999999
Q ss_pred EEEecCHhHHHHH
Q 005545 316 PIYSGRAAQVMDY 328 (691)
Q Consensus 316 iv~~G~~~~~~~~ 328 (691)
+...|++.++.++
T Consensus 212 i~Q~g~p~ely~~ 224 (338)
T COG3839 212 IQQVGTPLELYER 224 (338)
T ss_pred eeecCChHHHhhC
Confidence 9999999999654
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-47 Score=385.77 Aligned_cols=209 Identities=35% Similarity=0.574 Sum_probs=181.4
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
++++||+..|..+.. ...+|+|+|++|++||++||+|||||||||||++|+|+.. |++|+|.
T Consensus 2 i~~~~v~k~y~~~~~-----------------~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-pt~G~v~ 63 (226)
T COG1136 2 IELKNVSKIYGLGGE-----------------KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-PTSGEVL 63 (226)
T ss_pred cEEeeeEEEeccCCc-----------------ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEE
Confidence 578999999874311 1569999999999999999999999999999999999764 6899999
Q ss_pred ECCEeCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccc
Q 005545 160 YNGRQFSS-------SL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN-SVV 230 (691)
Q Consensus 160 ~~G~~~~~-------~~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~v 230 (691)
++|+++.. .+ ++.+|||+|+..|.|++||.||+.+++.+. .....+.+++++++++.+||.+..+ +++
T Consensus 64 i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 64 INGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred ECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhccCCc
Confidence 99988752 23 457999999999999999999999876554 2223256678899999999987666 444
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEE
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
.+|||||||||+|||||+.+|++|++||||.+||+.++..|+++|++++++ |+|||++|||+ .+...|||++
T Consensus 141 -----~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i 213 (226)
T COG1136 141 -----SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI 213 (226)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEE
Confidence 579999999999999999999999999999999999999999999999875 99999999996 4678999999
Q ss_pred EecCCeE
Q 005545 310 VLSEGSP 316 (691)
Q Consensus 310 ~L~~G~i 316 (691)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999993
No 19
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-48 Score=384.56 Aligned_cols=222 Identities=29% Similarity=0.503 Sum_probs=195.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
.+|+++||+..|+. .+++|+|||++|++||++||+||||||||||||+|.|+. ++.+|+
T Consensus 2 ~~i~~~nl~k~yp~--------------------~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d~t~G~ 60 (258)
T COG3638 2 MMIEVKNLSKTYPG--------------------GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGE 60 (258)
T ss_pred ceEEEeeeeeecCC--------------------CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-CCCcce
Confidence 47999999999972 256999999999999999999999999999999999976 577999
Q ss_pred EEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHHHcCCCc
Q 005545 158 ITYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK------KLTREEKIEQAEMVIMELGLTR 224 (691)
Q Consensus 158 I~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~------~~~~~~~~~~v~~~l~~lgL~~ 224 (691)
|.+||.++.+ .+|+++||++|++.|.+.+||.+|+..+..-+.+. -.+++ .+.++-+.|+++|+.+
T Consensus 61 i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~-dk~~Al~aLervgi~~ 139 (258)
T COG3638 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE-DKAQALDALERVGILD 139 (258)
T ss_pred EEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHH-HHHHHHHHHHHcCcHH
Confidence 9999987742 46789999999999999999999998765433221 12344 4557788999999999
Q ss_pred cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHh
Q 005545 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~ 303 (691)
.+.++.+ .|||||+|||+|||||+.+|+++|.|||+++|||.+++++|+.|+++++ +|.|||++.||. +.+.+
T Consensus 140 ~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~ 213 (258)
T COG3638 140 KAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKK 213 (258)
T ss_pred HHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHH
Confidence 9888875 5999999999999999999999999999999999999999999999986 699999999996 46889
Q ss_pred cCCEEEEecCCeEEEecCHhHHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
+|||++-|++|+++|+|+++++-+
T Consensus 214 Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 214 YADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHhhheEecCCcEEEeCChhhhhH
Confidence 999999999999999999988754
No 20
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=376.21 Aligned_cols=234 Identities=32% Similarity=0.426 Sum_probs=207.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+..+|+.+|+.. .++++||||+++.||+++|+|||||||||+||+|++++. |++|+|
T Consensus 1 Ml~v~~l~K~y~~~--------------------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-P~~G~v 59 (245)
T COG4555 1 MLEVTDLTKSYGSK--------------------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-PDSGKV 59 (245)
T ss_pred CeeeeehhhhccCH--------------------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-CCCceE
Confidence 36778888877632 248999999999999999999999999999999999884 779999
Q ss_pred EECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545 159 TYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235 (691)
Q Consensus 159 ~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 235 (691)
+++|.+..+ ..|++||.++.+..+|..||++|||.|.+++. .+.+.+.+++++++.+.++|.++.|+++|
T Consensus 60 ~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~---- 132 (245)
T COG4555 60 TIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG---- 132 (245)
T ss_pred EEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh----
Confidence 999988753 57899999998888999999999999988764 66788888999999999999999999997
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
++|.|+||||+|||||+++|++++|||||||||..+...+.+.++++.++|++||++||.+ +++.++||+|++|++|+
T Consensus 133 -~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Ge 210 (245)
T COG4555 133 -EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGE 210 (245)
T ss_pred -hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCc
Confidence 5999999999999999999999999999999999999999999999999999999999995 57889999999999999
Q ss_pred EEEecCHhHHHHHhhhcCCCCCCCCCChHHHHHHhh
Q 005545 316 PIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLA 351 (691)
Q Consensus 316 iv~~G~~~~~~~~f~~~g~~~~~~~~npad~~l~l~ 351 (691)
+++.|+.+++...-. ..|+.+-+++..
T Consensus 211 vv~~gs~~~l~~r~~---------~~~le~~f~~~l 237 (245)
T COG4555 211 VVLEGSIEALDARTV---------LRNLEEIFAFAL 237 (245)
T ss_pred EEEcCCHHHHHHHHh---------hcCHHHHHHHhh
Confidence 999999988865421 356655555543
No 21
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-47 Score=386.44 Aligned_cols=205 Identities=35% Similarity=0.513 Sum_probs=184.7
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..+++++|+++|.. ..+|+|+|++|++||+++|+||||||||||||+|+|+. .+.+|+
T Consensus 2 ~~l~i~~v~~~f~~---------------------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~-~p~~G~ 59 (248)
T COG1116 2 ALLEIEGVSKSFGG---------------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE-KPTSGE 59 (248)
T ss_pred ceEEEEeeEEEeCc---------------------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCce
Confidence 35889999998872 46999999999999999999999999999999999977 578999
Q ss_pred EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
|.++|+++ ......++||+|++.++|.+||+||+.++...+ ..++++.++++++.|+.+||.+..+... ++
T Consensus 60 V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~q 130 (248)
T COG1116 60 VLLDGRPV-TGPGPDIGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYP-----HQ 130 (248)
T ss_pred EEECCccc-CCCCCCEEEEeccCcccchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCc-----cc
Confidence 99999998 445678999999999999999999999987654 2456777779999999999998888654 68
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
|||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+ .++||+++|||.. ++..++|||++|+++
T Consensus 131 LSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred cChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999999999999999986 5899999999975 677899999999984
No 22
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-47 Score=387.16 Aligned_cols=219 Identities=30% Similarity=0.521 Sum_probs=189.7
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||++.|.. .++|+||||++++|++++|+||||||||||+|+|.|++ .|.+|+
T Consensus 3 ~~i~v~nl~v~y~~---------------------~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll-~p~~G~ 60 (254)
T COG1121 3 PMIEVENLTVSYGN---------------------RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL-KPSSGE 60 (254)
T ss_pred cEEEEeeeEEEECC---------------------EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCcce
Confidence 46899999999972 14999999999999999999999999999999999987 477999
Q ss_pred EEECCEeCChhc-cccEEEEccCC---CCCCCCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545 158 ITYNGRQFSSSL-KRKTGFVTQDD---VLYPHLTVLETLSYAALLRLP--KKLTREEKIEQAEMVIMELGLTRCRNSVVG 231 (691)
Q Consensus 158 I~~~G~~~~~~~-~~~igyv~Q~~---~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 231 (691)
|.++|++..+.. +.+||||||.. .-|| +||+|.+..+...+.. ...++ +.++.++++|+.+|+.+.+|+.+|
T Consensus 61 i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~ 138 (254)
T COG1121 61 IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIG 138 (254)
T ss_pred EEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCccc
Confidence 999999876532 46899999954 3354 7999999886432221 12233 346789999999999999999997
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+|||||+|||.|||||+.+|++|+|||||+|+|+.++..++++|++++++|+||++++||+. .+.+.||+|+.|
T Consensus 139 -----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~L 212 (254)
T COG1121 139 -----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICL 212 (254)
T ss_pred -----ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEE
Confidence 59999999999999999999999999999999999999999999999999999999999975 588999999999
Q ss_pred cCCeEEEecCHhHHHH
Q 005545 312 SEGSPIYSGRAAQVMD 327 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~~ 327 (691)
+ +++++.|+++++.+
T Consensus 213 n-~~~~~~G~~~~~~~ 227 (254)
T COG1121 213 N-RHLIASGPPEEVLT 227 (254)
T ss_pred c-CeeEeccChhhccC
Confidence 5 67889999988854
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.3e-47 Score=367.43 Aligned_cols=213 Identities=31% Similarity=0.444 Sum_probs=193.1
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+|+||++.|+.+ +.+|+||||+|++||++-|+||||||||||||+|.+.. .|+.|+|
T Consensus 1 mI~f~~V~k~Y~~g--------------------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~pt~G~i 59 (223)
T COG2884 1 MIRFENVSKAYPGG--------------------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKI 59 (223)
T ss_pred CeeehhhhhhcCCC--------------------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-cCCCceE
Confidence 47999999999832 46999999999999999999999999999999999966 5789999
Q ss_pred EECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545 159 TYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231 (691)
Q Consensus 159 ~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 231 (691)
+++|++++. .+|++||+|+||..|.++.||+||+.|+.+.. +.+.++.++++.++|+.+||.+..+...
T Consensus 60 ~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP- 135 (223)
T COG2884 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP- 135 (223)
T ss_pred EECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-
Confidence 999999863 36899999999999999999999999987654 5577888899999999999998887644
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
.+|||||||||+||||++.+|++|+.||||-+|||..+.+|++++.++.+.|.|||++||| ...+..+-.|++.|
T Consensus 136 ----~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l 210 (223)
T COG2884 136 ----SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLAL 210 (223)
T ss_pred ----cccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999 45677788899999
Q ss_pred cCCeEEEecC
Q 005545 312 SEGSPIYSGR 321 (691)
Q Consensus 312 ~~G~iv~~G~ 321 (691)
++|+++.+..
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987654
No 24
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-47 Score=387.79 Aligned_cols=209 Identities=34% Similarity=0.535 Sum_probs=188.7
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCE---eCCh--hccccEEEEccCCCCCCCC
Q 005545 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFSS--SLKRKTGFVTQDDVLYPHL 186 (691)
Q Consensus 112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~---~~~~--~~~~~igyv~Q~~~l~~~l 186 (691)
...+++|||++|+.||++||+||||||||||||+|+|+. .|++|.|.+||+ +.++ ...|+||||+|+..+|++|
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hm 92 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE-TPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHM 92 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC-CCCCceEEECCEeccchhccchhhcceeEEEechhhcccc
Confidence 456899999999999999999999999999999999977 578999999999 5443 2346899999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545 187 TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266 (691)
Q Consensus 187 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 266 (691)
||.||+.|+...+ ....++.+.+.+++++|+.+.|++..+.+. .+|||||||||++||||+.+|++||||||++
T Consensus 93 tVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLLLDEPf~ 166 (345)
T COG1118 93 TVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFG 166 (345)
T ss_pred hHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEeecCCch
Confidence 9999999998765 233456778889999999999998877654 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHH
Q 005545 267 GLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 267 gLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 328 (691)
+||..-+.++.+.|+++.++ |.|+|++|||+ +++.++||||++|++|+|...|+++|+.+.
T Consensus 167 ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 99999999999999999875 99999999996 578999999999999999999999999654
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.8e-46 Score=396.65 Aligned_cols=220 Identities=30% Similarity=0.447 Sum_probs=196.3
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|.. +.+|+||||+|++||++||+||||||||||+++|+|++ .+++|+
T Consensus 6 ~~i~i~~l~k~~~~---------------------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~-~p~~G~ 63 (306)
T PRK13537 6 APIDFRNVEKRYGD---------------------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT-HPDAGS 63 (306)
T ss_pred ceEEEEeEEEEECC---------------------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceE
Confidence 46999999999861 35999999999999999999999999999999999977 477999
Q ss_pred EEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 158 ITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 158 I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
|.++|.++.. ..++++||++|++.+++.+||+||+.|.+..+ ..+..+..++++++++.++|.+..++.++
T Consensus 64 v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 137 (306)
T PRK13537 64 ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG--- 137 (306)
T ss_pred EEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh---
Confidence 9999998753 35678999999999999999999999766543 23444555678899999999988888774
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
+||||||||++||+||+.+|++|+|||||+|||+.++..+.++|++++++|+|||++||++. ++.++||+|++|++|
T Consensus 138 --~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G 214 (306)
T PRK13537 138 --ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEG 214 (306)
T ss_pred --hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999878999999999964 688999999999999
Q ss_pred eEEEecCHhHHHHH
Q 005545 315 SPIYSGRAAQVMDY 328 (691)
Q Consensus 315 ~iv~~G~~~~~~~~ 328 (691)
++++.|+++++..-
T Consensus 215 ~i~~~g~~~~l~~~ 228 (306)
T PRK13537 215 RKIAEGAPHALIES 228 (306)
T ss_pred EEEEECCHHHHHhc
Confidence 99999999998653
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=7.5e-46 Score=399.55 Aligned_cols=221 Identities=28% Similarity=0.453 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+++|+.+. +.+.+|+|+||+|++||+++|+||||||||||+|+|+|+. ++++|+|
T Consensus 1 mI~~~~lsk~y~~~~-----------------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-~p~~G~I 62 (343)
T TIGR02314 1 MIKLSNITKVFHQGT-----------------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTSGSV 62 (343)
T ss_pred CEEEEEEEEEECCCC-----------------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEE
Confidence 379999999996211 1235999999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545 159 TYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231 (691)
Q Consensus 159 ~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 231 (691)
.++|+++.. ..++.+||++|+..+++.+||+||+.++.... ..++++.++++.++++.+||.+..+..+
T Consensus 63 ~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~- 138 (343)
T TIGR02314 63 IVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP- 138 (343)
T ss_pred EECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999998853 24678999999999999999999999875432 2355666778999999999998877665
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEE
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
++|||||||||+|||||+.+|++|+|||||||||+.++..++++|++++++ |.|||++||++ +.+.++||++++
T Consensus 139 ----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~v 213 (343)
T TIGR02314 139 ----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAV 213 (343)
T ss_pred ----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999875 99999999996 467899999999
Q ss_pred ecCCeEEEecCHhHHH
Q 005545 311 LSEGSPIYSGRAAQVM 326 (691)
Q Consensus 311 L~~G~iv~~G~~~~~~ 326 (691)
|++|++++.|+++++.
T Consensus 214 l~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 214 ISNGELIEQGTVSEIF 229 (343)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998875
No 27
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=400.95 Aligned_cols=219 Identities=31% Similarity=0.481 Sum_probs=195.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+. ++.+|+|+||++++||+++|+||||||||||||+|+|+. .+++|+|
T Consensus 3 ~l~i~~l~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~-~p~~G~I 61 (356)
T PRK11650 3 GLKLQAVRKSYDG--------------------KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE-RITSGEI 61 (356)
T ss_pred EEEEEeEEEEeCC--------------------CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEE
Confidence 5899999999841 135899999999999999999999999999999999976 5789999
Q ss_pred EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||.+..++.+ +
T Consensus 62 ~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 133 (356)
T PRK11650 62 WIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----R 133 (356)
T ss_pred EECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----h
Confidence 999998853 34578999999999999999999999986432 2455666678999999999998887766 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
+|||||||||+|||||+.+|++||||||||+||+.++..+.+.|+++.++ |.|+|++|||+ .++.+++|++++|++|+
T Consensus 134 ~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGV 212 (356)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCE
Confidence 79999999999999999999999999999999999999999999999875 99999999996 46889999999999999
Q ss_pred EEEecCHhHHHH
Q 005545 316 PIYSGRAAQVMD 327 (691)
Q Consensus 316 iv~~G~~~~~~~ 327 (691)
++..|+++++.+
T Consensus 213 i~~~g~~~~~~~ 224 (356)
T PRK11650 213 AEQIGTPVEVYE 224 (356)
T ss_pred EEEECCHHHHHh
Confidence 999999998854
No 28
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-46 Score=371.26 Aligned_cols=223 Identities=28% Similarity=0.402 Sum_probs=191.5
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+.+||++.|+.+.. ...+|+||||+|++||+++|+|+||||||||.++|+|+. .+.+|+
T Consensus 2 ~~l~v~nl~~~y~~~~~-----------------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~ 63 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-----------------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE-KPSSGS 63 (252)
T ss_pred ceEEEeceEEEecCCcc-----------------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc-CCCCce
Confidence 36899999999984321 125999999999999999999999999999999999976 578999
Q ss_pred EEECCEeCCh-----hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545 158 ITYNGRQFSS-----SLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230 (691)
Q Consensus 158 I~~~G~~~~~-----~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 230 (691)
|.++|++... ..++.+.+||||+. +.|..||++.|.-+... .+.++.+ +++.++++.+||.+..-.+
T Consensus 64 I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R- 137 (252)
T COG1124 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDR- 137 (252)
T ss_pred EEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhc-
Confidence 9999987754 35778999999985 89999999998766532 2334433 3489999999997644333
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEE
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
++.+||||||||++|||||+.+|++|+||||||+||+..+.+|+++|.+++++ |.|.|++|||. ..+..+||||+
T Consensus 138 ---~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~ 213 (252)
T COG1124 138 ---RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIA 213 (252)
T ss_pred ---CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhhee
Confidence 23579999999999999999999999999999999999999999999999974 88999999995 56899999999
Q ss_pred EecCCeEEEecCHhHHHHH
Q 005545 310 VLSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~~~~~ 328 (691)
+|++|++++.++.+++.+.
T Consensus 214 Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 214 VMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred eeeCCeEEEeechhhhhcC
Confidence 9999999999999998653
No 29
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.3e-45 Score=396.07 Aligned_cols=224 Identities=30% Similarity=0.429 Sum_probs=198.2
Q ss_pred CccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 005545 74 SLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK 153 (691)
Q Consensus 74 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~ 153 (691)
.+..+.|+++||+++|+. +.+|+|+||+|++||++||+||||||||||+++|+|++ .|
T Consensus 36 ~~~~~~i~i~nl~k~y~~---------------------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~-~p 93 (340)
T PRK13536 36 SMSTVAIDLAGVSKSYGD---------------------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-SP 93 (340)
T ss_pred cCCceeEEEEEEEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CC
Confidence 445678999999999961 35999999999999999999999999999999999987 47
Q ss_pred CceEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545 154 FSGKITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230 (691)
Q Consensus 154 ~~G~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 230 (691)
++|+|.++|+++.. ..++.+||++|++.+++.+||.||+.+..... .....+..++++++++.++|.+..++++
T Consensus 94 ~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~ 170 (340)
T PRK13536 94 DAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARV 170 (340)
T ss_pred CceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCCh
Confidence 79999999998753 35678999999999999999999998765433 2234445567888999999998888877
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
+ .|||||||||+||+||+++|++|||||||+|||+.++..+.++|++++++|+|||++||++ +++.++||+|++
T Consensus 171 ~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~i 244 (340)
T PRK13536 171 S-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCV 244 (340)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEE
Confidence 4 6999999999999999999999999999999999999999999999988899999999996 468899999999
Q ss_pred ecCCeEEEecCHhHHHHH
Q 005545 311 LSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 311 L~~G~iv~~G~~~~~~~~ 328 (691)
|++|++++.|+++++...
T Consensus 245 l~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 245 LEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EECCEEEEEcCHHHHHhh
Confidence 999999999999998654
No 30
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.8e-45 Score=398.82 Aligned_cols=218 Identities=32% Similarity=0.513 Sum_probs=196.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|.. +.+|+|+||++++||+++|+|||||||||||++|+|+. .+++|+|
T Consensus 4 ~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~-~p~~G~I 61 (353)
T TIGR03265 4 YLSIDNIRKRFGA---------------------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE-RQTAGTI 61 (353)
T ss_pred EEEEEEEEEEeCC---------------------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCceEE
Confidence 6899999999861 35899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
.++|+++.. ..++.+|||+|+..+||++||+||+.|+...+ ..++.+..++++++++.+||.+..++.+ +
T Consensus 62 ~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~ 133 (353)
T TIGR03265 62 YQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----G 133 (353)
T ss_pred EECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----h
Confidence 999998853 34678999999999999999999999986532 3456667788999999999998888765 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
+|||||||||+|||||+.+|++||||||+++||+.++.++.+.|+++.++ |.|+|++|||+. ++..++|++++|++|+
T Consensus 134 ~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~ 212 (353)
T TIGR03265 134 QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGV 212 (353)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999875 899999999964 6889999999999999
Q ss_pred EEEecCHhHHHH
Q 005545 316 PIYSGRAAQVMD 327 (691)
Q Consensus 316 iv~~G~~~~~~~ 327 (691)
+++.|+++++.+
T Consensus 213 i~~~g~~~~~~~ 224 (353)
T TIGR03265 213 IEQVGTPQEIYR 224 (353)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-45 Score=377.21 Aligned_cols=217 Identities=32% Similarity=0.519 Sum_probs=188.7
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~ 58 (235)
T cd03261 1 IELRGLTKSFGG---------------------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL-RPDSGEVL 58 (235)
T ss_pred CeEEEEEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence 468999998851 35999999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
++|+++.. ..++.++||+|++.+++.+||+||+.+..... ...+.++..++++++++.+||.+..++.+
T Consensus 59 ~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (235)
T cd03261 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREH--TRLSEEEIREIVLEKLEAVGLRGAEDLYP-- 134 (235)
T ss_pred ECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHcCCchhhcCCh--
Confidence 99988742 24668999999999999999999998864321 12344455667889999999987777665
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|
T Consensus 135 ---~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l 210 (235)
T cd03261 135 ---AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVL 210 (235)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEE
Confidence 46999999999999999999999999999999999999999999999987 4899999999965 577899999999
Q ss_pred cCCeEEEecCHhHHH
Q 005545 312 SEGSPIYSGRAAQVM 326 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~ 326 (691)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999988764
No 32
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=396.74 Aligned_cols=218 Identities=25% Similarity=0.468 Sum_probs=195.9
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|.. +.+|+|+|+++++||+++|+||||||||||||+|+|+. .+++|+|
T Consensus 6 ~l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I 63 (351)
T PRK11432 6 FVVLKNITKRFGS---------------------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQI 63 (351)
T ss_pred EEEEEeEEEEECC---------------------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEE
Confidence 6999999999851 35899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||.+..++.+ +
T Consensus 64 ~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~ 135 (351)
T PRK11432 64 FIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----D 135 (351)
T ss_pred EECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 999998854 34578999999999999999999999986543 3456667788999999999988777665 5
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++.+++|++++|++|+
T Consensus 136 ~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~ 214 (351)
T PRK11432 136 QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGK 214 (351)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999875 899999999964 6889999999999999
Q ss_pred EEEecCHhHHHH
Q 005545 316 PIYSGRAAQVMD 327 (691)
Q Consensus 316 iv~~G~~~~~~~ 327 (691)
++..|+++++..
T Consensus 215 i~~~g~~~~~~~ 226 (351)
T PRK11432 215 IMQIGSPQELYR 226 (351)
T ss_pred EEEEcCHHHHHh
Confidence 999999998854
No 33
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-46 Score=363.59 Aligned_cols=223 Identities=23% Similarity=0.397 Sum_probs=192.0
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC----
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR---- 151 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~---- 151 (691)
....++++||++.|.. +.+|+|||+.|++++++|+|||||||||||||+|.....
T Consensus 4 ~~~~~~~~~l~~yYg~---------------------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~ 62 (253)
T COG1117 4 KIPAIEVRDLNLYYGD---------------------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG 62 (253)
T ss_pred ccceeEecceeEEECc---------------------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcC
Confidence 3467899999999972 469999999999999999999999999999999987432
Q ss_pred CCCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545 152 GKFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225 (691)
Q Consensus 152 ~~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 225 (691)
...+|+|.++|+++.. .+|+++|+|||.|.-|| +|++||+.|+.++. +...++.++.|+..|+...|.+.
T Consensus 63 ~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~---g~~~~~ldeiVe~sLk~AaLWdE 138 (253)
T COG1117 63 ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH---GIKDKELDEIVESSLKKAALWDE 138 (253)
T ss_pred ceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhh---ccchHHHHHHHHHHHHHhHhHHH
Confidence 1358999999999853 57999999999999998 99999999997764 22336677889999999888543
Q ss_pred ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~ 305 (691)
-..+.. ....+|||||+||++|||||+.+|+|||||||||+|||.+...|-+++.+|++ .-|||++||.+ ..+.+++
T Consensus 139 VKDrL~-~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnm-qQAaRvS 215 (253)
T COG1117 139 VKDRLH-KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNM-QQAARVS 215 (253)
T ss_pred hHHHhh-CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCH-HHHHHHh
Confidence 322222 12357999999999999999999999999999999999999999999999985 58999999996 4688999
Q ss_pred CEEEEecCCeEEEecCHhHHH
Q 005545 306 DKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 306 D~v~~L~~G~iv~~G~~~~~~ 326 (691)
|+..++..|+++++|++++++
T Consensus 216 D~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 216 DYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999984
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5e-45 Score=396.12 Aligned_cols=218 Identities=27% Similarity=0.470 Sum_probs=195.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc--e
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS--G 156 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~--G 156 (691)
.|+++||+++|.. +.+|+|+|++|++||+++|+|||||||||||++|+|+. .+++ |
T Consensus 5 ~l~~~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~~~G 62 (362)
T TIGR03258 5 GIRIDHLRVAYGA---------------------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTG 62 (362)
T ss_pred EEEEEEEEEEECC---------------------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCE
Confidence 4889999999861 35899999999999999999999999999999999976 4678 9
Q ss_pred EEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 157 KITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 157 ~I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||++..++++
T Consensus 63 ~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~---- 135 (362)
T TIGR03258 63 RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP---- 135 (362)
T ss_pred EEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh----
Confidence 99999998753 34578999999999999999999999986533 3455666778999999999998888766
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG--GRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++ |+|+|++|||+ .++..++|+|++|+
T Consensus 136 -~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~ 213 (362)
T TIGR03258 136 -AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMK 213 (362)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999876 79999999996 46889999999999
Q ss_pred CCeEEEecCHhHHHH
Q 005545 313 EGSPIYSGRAAQVMD 327 (691)
Q Consensus 313 ~G~iv~~G~~~~~~~ 327 (691)
+|+++..|+++++.+
T Consensus 214 ~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 214 DGRLAAHGEPQALYD 228 (362)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999998854
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=9.1e-45 Score=393.34 Aligned_cols=221 Identities=30% Similarity=0.476 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|.. +.+|+|+|++|++||+++|+||||||||||||+|+|+. ++++|+|
T Consensus 2 ~L~i~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I 59 (353)
T PRK10851 2 SIEIANIKKSFGR---------------------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-HQTSGHI 59 (353)
T ss_pred EEEEEEEEEEeCC---------------------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence 5889999999851 35899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545 159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235 (691)
Q Consensus 159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 235 (691)
+++|+++.. ..++.++||+|++.++|++||+||+.|+...... ...++++..++++++++.++|.+..++++
T Consensus 60 ~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~----- 134 (353)
T PRK10851 60 RFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP----- 134 (353)
T ss_pred EECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----
Confidence 999998853 3456899999999999999999999987543110 12345566678999999999988877765
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++ .++.++||++++|++|
T Consensus 135 ~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G 213 (353)
T PRK10851 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQG 213 (353)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 479999999999999999999999999999999999999999999999875 89999999996 4688999999999999
Q ss_pred eEEEecCHhHHHH
Q 005545 315 SPIYSGRAAQVMD 327 (691)
Q Consensus 315 ~iv~~G~~~~~~~ 327 (691)
++++.|+++++..
T Consensus 214 ~i~~~g~~~~i~~ 226 (353)
T PRK10851 214 NIEQAGTPDQVWR 226 (353)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998854
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=9.9e-45 Score=395.26 Aligned_cols=220 Identities=27% Similarity=0.455 Sum_probs=196.1
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
+..|+++||+++|.. +.+|+|+|+++++||+++|+|||||||||||++|+|+. .+.+|
T Consensus 12 ~~~L~l~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~-~p~~G 69 (375)
T PRK09452 12 SPLVELRGISKSFDG---------------------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSG 69 (375)
T ss_pred CceEEEEEEEEEECC---------------------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCce
Confidence 346999999999861 35899999999999999999999999999999999977 57799
Q ss_pred EEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 157 KITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 157 ~I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
+|.++|+++.. ..++.+|||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||.+..++++
T Consensus 70 ~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p---- 142 (375)
T PRK09452 70 RIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP---- 142 (375)
T ss_pred EEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh----
Confidence 99999998853 34678999999999999999999999976432 2345566678899999999998888766
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++|||+ .++..++|++++|++
T Consensus 143 -~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~ 220 (375)
T PRK09452 143 -HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRD 220 (375)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 479999999999999999999999999999999999999999999999875 99999999996 468899999999999
Q ss_pred CeEEEecCHhHHHH
Q 005545 314 GSPIYSGRAAQVMD 327 (691)
Q Consensus 314 G~iv~~G~~~~~~~ 327 (691)
|+++..|+++++..
T Consensus 221 G~i~~~g~~~~i~~ 234 (375)
T PRK09452 221 GRIEQDGTPREIYE 234 (375)
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998854
No 37
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.7e-44 Score=384.60 Aligned_cols=219 Identities=31% Similarity=0.428 Sum_probs=192.8
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
+.|+++||+++|.. +.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+
T Consensus 3 ~~i~~~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~ 60 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---------------------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI-SPDRGK 60 (303)
T ss_pred cEEEEEeEEEEeCC---------------------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceE
Confidence 46899999999861 35899999999999999999999999999999999977 467999
Q ss_pred EEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 158 ITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 158 I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
|.++|+++.. ..++.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.++|.+..++.++
T Consensus 61 i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~--- 134 (303)
T TIGR01288 61 ITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA--- 134 (303)
T ss_pred EEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh---
Confidence 9999998743 34678999999999999999999998654332 22344445677889999999988887764
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|
T Consensus 135 --~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 135 --LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESG 211 (303)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999888999999999964 678899999999999
Q ss_pred eEEEecCHhHHHH
Q 005545 315 SPIYSGRAAQVMD 327 (691)
Q Consensus 315 ~iv~~G~~~~~~~ 327 (691)
++++.|+++++..
T Consensus 212 ~i~~~g~~~~~~~ 224 (303)
T TIGR01288 212 RKIAEGRPHALID 224 (303)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998864
No 38
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8.3e-45 Score=386.74 Aligned_cols=210 Identities=30% Similarity=0.463 Sum_probs=186.2
Q ss_pred ccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh---hccccEEEEccCCCCCCCC
Q 005545 110 TRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS---SLKRKTGFVTQDDVLYPHL 186 (691)
Q Consensus 110 ~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~l 186 (691)
++.+.+|+|+||+|++||++||+||||||||||+|+|+|++ ++++|+|.++|+++.. ..++.+||++|++.+++.+
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL-RPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 34467999999999999999999999999999999999987 4779999999998743 3466899999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545 187 TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266 (691)
Q Consensus 187 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 266 (691)
||+||+.+.+..+ .....+..++++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+
T Consensus 82 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999876543 23344555678999999999988887764 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHh
Q 005545 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF 329 (691)
Q Consensus 267 gLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 329 (691)
|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+.+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 215 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRRL 215 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHhc
Confidence 99999999999999999888999999999964 688899999999999999999999886543
No 39
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-45 Score=371.04 Aligned_cols=220 Identities=30% Similarity=0.461 Sum_probs=195.9
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.++++|++|+|+.. +.+|+|+|+++++||.++|+|+||||||||+++|+|++ .|.+|+|
T Consensus 3 ~i~~~~l~~~y~~~--------------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl-~p~~G~v 61 (235)
T COG1122 3 MIEAENLSFRYPGR--------------------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL-KPTSGEV 61 (235)
T ss_pred eEEEEEEEEEcCCC--------------------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC-cCCCCEE
Confidence 58899999999731 35999999999999999999999999999999999988 4679999
Q ss_pred EECCEeCC-----hhccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 159 TYNGRQFS-----SSLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 159 ~~~G~~~~-----~~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
.++|.+.. ..+++++|||+|++. .+-.-||.|.+.|+.... ..++++.+++++++++.+||.+.+++.+
T Consensus 62 ~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-- 136 (235)
T COG1122 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-- 136 (235)
T ss_pred EECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc--
Confidence 99999865 257889999999973 333569999999987532 5567788899999999999999887765
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
..|||||||||+||.+|+.+|++|+|||||||||+..+.++++++++|.++ |+|||++|||. ..+..++|++++|
T Consensus 137 ---~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl 212 (235)
T COG1122 137 ---FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVL 212 (235)
T ss_pred ---cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEE
Confidence 469999999999999999999999999999999999999999999999987 79999999996 5688999999999
Q ss_pred cCCeEEEecCHhHHHHH
Q 005545 312 SEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~~~ 328 (691)
++|+++++|+++++.+.
T Consensus 213 ~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 213 DDGKILADGDPAEIFND 229 (235)
T ss_pred ECCEEeecCCHHHHhhh
Confidence 99999999999887653
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-44 Score=366.60 Aligned_cols=215 Identities=30% Similarity=0.465 Sum_probs=187.6
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|.. +.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++++|+|.
T Consensus 1 i~~~~~~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~ 58 (220)
T cd03265 1 IEVENLVKKYGD---------------------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-KPTSGRAT 58 (220)
T ss_pred CEEEEEEEEECC---------------------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence 468899998851 35999999999999999999999999999999999976 46799999
Q ss_pred ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
++|.++.. ..++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+ +
T Consensus 59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (220)
T cd03265 59 VAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----K 130 (220)
T ss_pred ECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----h
Confidence 99988742 34568999999999999999999998865432 2234445567899999999987777766 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999999876 899999999964 5778999999999999
Q ss_pred EEEecCHhHH
Q 005545 316 PIYSGRAAQV 325 (691)
Q Consensus 316 iv~~G~~~~~ 325 (691)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
No 41
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-44 Score=365.43 Aligned_cols=210 Identities=35% Similarity=0.557 Sum_probs=182.4
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~ 58 (213)
T cd03259 1 LELKGLSKTYGS---------------------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEIL 58 (213)
T ss_pred CeeeeeEEEeCC---------------------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEE
Confidence 468899998851 35899999999999999999999999999999999977 47799999
Q ss_pred ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+ ..
T Consensus 59 ~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03259 59 IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HE 130 (213)
T ss_pred ECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 99998753 23567999999999999999999998765322 1234445567889999999987777665 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 4899999999964 57789999999999999
Q ss_pred EEec
Q 005545 317 IYSG 320 (691)
Q Consensus 317 v~~G 320 (691)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
No 42
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-44 Score=391.91 Aligned_cols=218 Identities=30% Similarity=0.499 Sum_probs=193.3
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|.. +.+|+|+|+++++||+++|+||||||||||||+|+|++ .+++|+|
T Consensus 3 ~l~i~~l~~~~~~---------------------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~-~p~~G~I 60 (369)
T PRK11000 3 SVTLRNVTKAYGD---------------------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-DITSGDL 60 (369)
T ss_pred EEEEEEEEEEeCC---------------------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEE
Confidence 4899999999861 35899999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
.++|+++.. ..++.+|||+|++.+++++||+||+.|+...+ ..+.++..++++++++.+||.+..++.+ .
T Consensus 61 ~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~ 132 (369)
T PRK11000 61 FIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----K 132 (369)
T ss_pred EECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----h
Confidence 999998753 23567999999999999999999999876432 2344556678899999999988777766 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++|||+. ++.++||++++|++|+
T Consensus 133 ~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~ 211 (369)
T PRK11000 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 211 (369)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999875 899999999964 6789999999999999
Q ss_pred EEEecCHhHHHH
Q 005545 316 PIYSGRAAQVMD 327 (691)
Q Consensus 316 iv~~G~~~~~~~ 327 (691)
++..|+++++..
T Consensus 212 i~~~g~~~~i~~ 223 (369)
T PRK11000 212 VAQVGKPLELYH 223 (369)
T ss_pred EEEEcCHHHHHh
Confidence 999999998854
No 43
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.9e-44 Score=365.37 Aligned_cols=208 Identities=27% Similarity=0.454 Sum_probs=180.7
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+.. .+.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|.
T Consensus 2 l~~~~l~~~~~~~-------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 61 (216)
T TIGR00960 2 IRFEQVSKAYPGG-------------------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE-KPTRGKIR 61 (216)
T ss_pred eEEEEEEEEecCC-------------------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence 7899999999521 135999999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..++.+
T Consensus 62 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 136 (216)
T TIGR00960 62 FNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-- 136 (216)
T ss_pred ECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh--
Confidence 99998742 14568999999999999999999998875432 2233445567889999999987777665
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|+
T Consensus 137 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~ 212 (216)
T TIGR00960 137 ---MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLS 212 (216)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 469999999999999999999999999999999999999999999999877999999999964 5778999999999
Q ss_pred CCeE
Q 005545 313 EGSP 316 (691)
Q Consensus 313 ~G~i 316 (691)
+|++
T Consensus 213 ~G~i 216 (216)
T TIGR00960 213 RGRL 216 (216)
T ss_pred CCcC
Confidence 9974
No 44
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=388.11 Aligned_cols=222 Identities=26% Similarity=0.449 Sum_probs=193.1
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+++|+.+. ..+.+|+|+||+|++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus 1 mi~i~~l~~~y~~~~-----------------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~-~p~~G~I 62 (343)
T PRK11153 1 MIELKNISKVFPQGG-----------------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE-RPTSGRV 62 (343)
T ss_pred CEEEEeEEEEeCCCC-----------------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEE
Confidence 378999999996211 1246999999999999999999999999999999999987 4779999
Q ss_pred EECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545 159 TYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231 (691)
Q Consensus 159 ~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 231 (691)
.++|+++.. ..++.+|||+|++.+++.+||+||+.+....+ ..+..+..++++++++.+||.+..++.+
T Consensus 63 ~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~- 138 (343)
T PRK11153 63 LVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP- 138 (343)
T ss_pred EECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999998752 23578999999999999999999999875432 2344555668899999999988777665
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEE
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++
T Consensus 139 ----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~ 213 (343)
T PRK11153 139 ----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAV 213 (343)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999999864 899999999964 57889999999
Q ss_pred ecCCeEEEecCHhHHHH
Q 005545 311 LSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 311 L~~G~iv~~G~~~~~~~ 327 (691)
|++|++++.|+++++..
T Consensus 214 l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 214 IDAGRLVEQGTVSEVFS 230 (343)
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999988753
No 45
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-44 Score=369.20 Aligned_cols=220 Identities=30% Similarity=0.457 Sum_probs=188.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+. +.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus 2 ~l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i 59 (239)
T cd03296 2 SIEVRNVSKRFGD---------------------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-RPDSGTI 59 (239)
T ss_pred EEEEEeEEEEECC---------------------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence 5899999999861 35999999999999999999999999999999999976 4679999
Q ss_pred EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545 159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235 (691)
Q Consensus 159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 235 (691)
.++|+++.. ..++.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.+||.+..++.+
T Consensus 60 ~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 134 (239)
T cd03296 60 LFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP----- 134 (239)
T ss_pred EECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----
Confidence 999998753 2356799999999999999999999886532210 00123344567889999999987777665
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|
T Consensus 135 ~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G 213 (239)
T cd03296 135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKG 213 (239)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999999875 899999999964 577899999999999
Q ss_pred eEEEecCHhHHH
Q 005545 315 SPIYSGRAAQVM 326 (691)
Q Consensus 315 ~iv~~G~~~~~~ 326 (691)
++++.|+++++.
T Consensus 214 ~i~~~~~~~~~~ 225 (239)
T cd03296 214 RIEQVGTPDEVY 225 (239)
T ss_pred eEEEecCHHHHh
Confidence 999999988763
No 46
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-44 Score=391.03 Aligned_cols=219 Identities=25% Similarity=0.431 Sum_probs=195.5
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++|++++|.. +.+|+|+|+++++||+++|+||||||||||||+|+|+. .+.+|+
T Consensus 18 ~~l~l~~v~~~~~~---------------------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~ 75 (377)
T PRK11607 18 PLLEIRNLTKSFDG---------------------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE-QPTAGQ 75 (377)
T ss_pred ceEEEEeEEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceE
Confidence 36999999999851 35899999999999999999999999999999999977 577999
Q ss_pred EEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545 158 ITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235 (691)
Q Consensus 158 I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 235 (691)
|.++|+++.. ..++.+|||+|++.+||++||.||+.|+...+ ..++.+..++++++++.++|.+..++.+
T Consensus 76 I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~----- 147 (377)
T PRK11607 76 IMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP----- 147 (377)
T ss_pred EEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 9999998753 35678999999999999999999999976432 3355666778999999999998777665
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.+ .|.|+|++|||+. ++..++|++++|++|
T Consensus 148 ~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G 226 (377)
T PRK11607 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRG 226 (377)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCC
Confidence 47999999999999999999999999999999999999999999999876 4899999999964 688999999999999
Q ss_pred eEEEecCHhHHHH
Q 005545 315 SPIYSGRAAQVMD 327 (691)
Q Consensus 315 ~iv~~G~~~~~~~ 327 (691)
+++..|+++++..
T Consensus 227 ~i~~~g~~~~~~~ 239 (377)
T PRK11607 227 KFVQIGEPEEIYE 239 (377)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998854
No 47
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.3e-44 Score=368.38 Aligned_cols=219 Identities=30% Similarity=0.481 Sum_probs=187.8
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 58 (236)
T cd03219 1 LEVRGLTKRFGG---------------------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPTSGSVL 58 (236)
T ss_pred CeeeeeEEEECC---------------------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEE
Confidence 468899998851 35899999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHHHcCCCcccc
Q 005545 160 YNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKK-------LTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 160 ~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
++|+++.. . .++.++|++|++.+++.+||+||+.+......... ....+..++++++++.+||.+..+
T Consensus 59 ~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 138 (236)
T cd03219 59 FDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLAD 138 (236)
T ss_pred ECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhh
Confidence 99998753 1 24579999999999999999999988654321110 013344567889999999987777
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.+ +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+
T Consensus 139 ~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 212 (236)
T cd03219 139 RPA-----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADR 212 (236)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 655 479999999999999999999999999999999999999999999999878899999999975 57789999
Q ss_pred EEEecCCeEEEecCHhHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~ 326 (691)
+++|++|++++.|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 213 VTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred EEEEeCCEEEeecCHHHhc
Confidence 9999999999999988763
No 48
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-44 Score=361.77 Aligned_cols=210 Identities=31% Similarity=0.568 Sum_probs=183.8
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~---------------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 58 (210)
T cd03269 1 LEVENVTKRFG---------------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPDSGEVL 58 (210)
T ss_pred CEEEEEEEEEC---------------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence 46889999885 135899999999999999999999999999999999976 47799999
Q ss_pred ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545 160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS 239 (691)
Q Consensus 160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 239 (691)
++|+++....++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+ ++||
T Consensus 59 ~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (210)
T cd03269 59 FDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELS 130 (210)
T ss_pred ECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCC
Confidence 9999876555678999999999999999999998765432 2233445567889999999987777655 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEe
Q 005545 240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS 319 (691)
Q Consensus 240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~ 319 (691)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+++|++++|++|++++.
T Consensus 131 ~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEec
Confidence 99999999999999999999999999999999999999999999877899999999964 57789999999999999876
Q ss_pred c
Q 005545 320 G 320 (691)
Q Consensus 320 G 320 (691)
|
T Consensus 210 ~ 210 (210)
T cd03269 210 G 210 (210)
T ss_pred C
Confidence 4
No 49
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6.6e-45 Score=346.31 Aligned_cols=215 Identities=31% Similarity=0.484 Sum_probs=188.8
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|...||+|+|..- ==.++++|+.||++||+||||||||||||+|+|.. .|.+|+|+
T Consensus 2 l~L~~V~~~y~~~-----------------------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~P~~G~i~ 57 (231)
T COG3840 2 LALDDVRFSYGHL-----------------------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-TPASGEIL 57 (231)
T ss_pred ccccceEEeeCcc-----------------------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc-CCCCceEE
Confidence 5677888888732 13578999999999999999999999999999976 47799999
Q ss_pred ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
+||++.+. ...|-+++++||.++|.++||.+|+.++.. |.-.-.++.+++++.++.++||..+.++..+ +
T Consensus 58 i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----~ 129 (231)
T COG3840 58 INGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----E 129 (231)
T ss_pred EcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---cccccCHHHHHHHHHHHHHhChhhHhhhCcc-----c
Confidence 99999864 467789999999999999999999987643 2222234556789999999999999887765 6
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
|||||||||++||+|+.+-+||+||||+|+|||.-+.++..++.++++ ++.|++++||+|+ ++.+++|+++++++|||
T Consensus 130 LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri 208 (231)
T COG3840 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRI 208 (231)
T ss_pred cCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEE
Confidence 999999999999999999999999999999999999999999999996 5899999999986 57899999999999999
Q ss_pred EEecCHhHHHH
Q 005545 317 IYSGRAAQVMD 327 (691)
Q Consensus 317 v~~G~~~~~~~ 327 (691)
.+.|+.++.+.
T Consensus 209 ~~~g~~~~~~~ 219 (231)
T COG3840 209 AAQGSTQELLS 219 (231)
T ss_pred EeeccHHHHhc
Confidence 99999988754
No 50
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-45 Score=356.74 Aligned_cols=210 Identities=29% Similarity=0.499 Sum_probs=188.6
Q ss_pred ccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCCCCCC
Q 005545 110 TRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYP 184 (691)
Q Consensus 110 ~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~ 184 (691)
|+++++++|||+++++||+++|+|||||||||.+.++.|+. .+++|+|.+||.+++. ..|..+||+||++..|.
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv-~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV-RPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE-ecCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 34567999999999999999999999999999999999987 5789999999999874 34568999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005545 185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEP 264 (691)
Q Consensus 185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP 264 (691)
.|||+|||......+. +...+.+.+++++++|++++|.+.++++-. .||||||+|+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 9999999987766542 122334566678899999999999998764 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 265 TSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 265 tsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
++|.||.+..+|.++++.|++.|..|++|-|+-. +...+|||.+++++|+++.+|+++++.+
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 9999999999999999999999999999999965 5789999999999999999999999854
No 51
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.9e-44 Score=388.42 Aligned_cols=209 Identities=26% Similarity=0.437 Sum_probs=186.4
Q ss_pred cccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hc----cccEEEEccCC
Q 005545 109 QTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SL----KRKTGFVTQDD 180 (691)
Q Consensus 109 ~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~----~~~igyv~Q~~ 180 (691)
+++.+.+|+|+||+|++||+++|+|||||||||||++|+|+. ++++|+|+++|+++.. .. ++.++||+|++
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 345567999999999999999999999999999999999977 5789999999999853 23 57899999999
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEE
Q 005545 181 VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLL 260 (691)
Q Consensus 181 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLl 260 (691)
.+++++||+||+.|..... ..++++..+++.++++.+||++..++.+ ..|||||||||+|||||+.+|++||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999876542 3456667778999999999988777665 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 261 LDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 261 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
|||||+|||+.++..+.+.|++++++ |+|||++|||+. ++.++||+|++|++|+++..|+++++..
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 99999999999999999999999864 899999999964 5789999999999999999999998754
No 52
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-44 Score=376.20 Aligned_cols=233 Identities=28% Similarity=0.404 Sum_probs=195.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+++|+... ...+.+|+|+|++|++||+++|+||||||||||+++|+|++ .+.+|+|
T Consensus 1 mi~~~~v~~~y~~~~----------------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i 63 (288)
T PRK13643 1 MIKFEKVNYTYQPNS----------------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL-QPTEGKV 63 (288)
T ss_pred CEEEEEEEEEeCCCC----------------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEE
Confidence 378999999996211 01135999999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545 159 TYNGRQFSS--------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN 227 (691)
Q Consensus 159 ~~~G~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 227 (691)
+++|.++.. ..++.+|||+|++ .+++ .||.||+.|+.... ..++++..+++.++++.+||. +..+
T Consensus 64 ~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 139 (288)
T PRK13643 64 TVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWE 139 (288)
T ss_pred EECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhcc
Confidence 999998741 3467899999986 5665 69999999875432 234566667889999999996 3555
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.+ +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus 140 ~~~-----~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dr 213 (288)
T PRK13643 140 KSP-----FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADY 213 (288)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 544 579999999999999999999999999999999999999999999999878999999999964 57789999
Q ss_pred EEEecCCeEEEecCHhHHHH---HhhhcCCCCCC
Q 005545 308 VVVLSEGSPIYSGRAAQVMD---YFGSIGYVPGF 338 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~~ 338 (691)
|++|++|++++.|+++++.. .+...|+.+|.
T Consensus 214 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 214 VYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred EEEEECCEEEEECCHHHHHcCHHHHHHcCCCCCh
Confidence 99999999999999998753 34556776554
No 53
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=6.2e-44 Score=365.41 Aligned_cols=216 Identities=32% Similarity=0.519 Sum_probs=187.7
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+ .+.+|+|+||++++||+++|+|||||||||||++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~---------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~ 58 (232)
T cd03218 1 LRAENLSKRYG---------------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV-KPDSGKIL 58 (232)
T ss_pred CeEEEEEEEeC---------------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEE
Confidence 46889999885 135899999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 160 YNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 160 ~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
++|+++.. . .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++.+
T Consensus 59 ~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 131 (232)
T cd03218 59 LDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA---- 131 (232)
T ss_pred ECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 99998642 1 2457999999999999999999998764322 1233445567889999999987777665
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|
T Consensus 132 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G 209 (232)
T cd03218 132 -SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEG 209 (232)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999999888999999999975 578999999999999
Q ss_pred eEEEecCHhHHH
Q 005545 315 SPIYSGRAAQVM 326 (691)
Q Consensus 315 ~iv~~G~~~~~~ 326 (691)
++++.|+.+++.
T Consensus 210 ~i~~~~~~~~~~ 221 (232)
T cd03218 210 KVLAEGTPEEIA 221 (232)
T ss_pred eEEEEeCHHHhh
Confidence 999999988763
No 54
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-44 Score=365.82 Aligned_cols=220 Identities=29% Similarity=0.454 Sum_probs=189.5
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+... +.+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 2 i~~~~l~~~~~~~~-----------------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 63 (233)
T cd03258 2 IELKNVSKVFGDTG-----------------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE-RPTSGSVL 63 (233)
T ss_pred eEEecceEEccCCC-----------------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence 78999999986210 0126999999999999999999999999999999999987 46799999
Q ss_pred ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
++|+++.. ..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+||.+..++.+
T Consensus 64 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 138 (233)
T cd03258 64 VDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-- 138 (233)
T ss_pred ECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh--
Confidence 99998742 13568999999999999999999998865432 2234445567889999999987777655
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|
T Consensus 139 ---~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l 214 (233)
T cd03258 139 ---AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVM 214 (233)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999999875 899999999964 577899999999
Q ss_pred cCCeEEEecCHhHHH
Q 005545 312 SEGSPIYSGRAAQVM 326 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~ 326 (691)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (233)
T cd03258 215 EKGEVVEEGTVEEVF 229 (233)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
No 55
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.5e-44 Score=362.42 Aligned_cols=214 Identities=35% Similarity=0.537 Sum_probs=185.4
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+... ....+|+|+|+++++||+++|+|+||||||||+++|+|++ ++.+|+|.
T Consensus 2 l~~~~v~~~~~~~~-----------------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 63 (218)
T cd03266 2 ITADALTKRFRDVK-----------------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EPDAGFAT 63 (218)
T ss_pred eEEEEEEEecCCCC-----------------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCceEE
Confidence 78999999986210 0125999999999999999999999999999999999976 46799999
Q ss_pred ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+ +
T Consensus 64 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 135 (218)
T cd03266 64 VDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----G 135 (218)
T ss_pred ECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----h
Confidence 99998753 35678999999999999999999998765432 2334455667889999999987777665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++
T Consensus 136 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRV 214 (218)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEE
Confidence 69999999999999999999999999999999999999999999999877999999999964 57889999999999999
Q ss_pred EEec
Q 005545 317 IYSG 320 (691)
Q Consensus 317 v~~G 320 (691)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
No 56
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8.8e-44 Score=378.64 Aligned_cols=218 Identities=23% Similarity=0.435 Sum_probs=193.2
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.++++|++++|.. +.+|+|+||++++||++||+||||||||||+|+|+|++ ++++|+|
T Consensus 2 ~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~-~~~~G~i 59 (301)
T TIGR03522 2 SIRVSSLTKLYGT---------------------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL-PPDSGSV 59 (301)
T ss_pred EEEEEEEEEEECC---------------------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence 4889999999851 35999999999999999999999999999999999977 5789999
Q ss_pred EECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545 159 TYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235 (691)
Q Consensus 159 ~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 235 (691)
.++|+++.. ..++.+||++|++.+++.+||.||+.+.+.++ ....++..++++++++.+||.+..++.+
T Consensus 60 ~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 131 (301)
T TIGR03522 60 QVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI----- 131 (301)
T ss_pred EECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch-----
Confidence 999998753 35678999999999999999999999876543 2334455567899999999998888776
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+
T Consensus 132 ~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 132 GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGK 209 (301)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCE
Confidence 46999999999999999999999999999999999999999999999975 799999999964 6889999999999999
Q ss_pred EEEecCHhHHHHH
Q 005545 316 PIYSGRAAQVMDY 328 (691)
Q Consensus 316 iv~~G~~~~~~~~ 328 (691)
+++.|+.+++...
T Consensus 210 i~~~g~~~~~~~~ 222 (301)
T TIGR03522 210 IVADKKLDELSAA 222 (301)
T ss_pred EEEeCCHHHHHHh
Confidence 9999999998653
No 57
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-44 Score=362.13 Aligned_cols=216 Identities=33% Similarity=0.504 Sum_probs=185.2
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+... ..+.+|+|+|++|++||+++|+||||||||||+|+|+|+. ++.+|+|.
T Consensus 1 l~~~~l~~~~~~~~-----------------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 62 (220)
T cd03293 1 LEVRNVSKTYGGGG-----------------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE-RPTSGEVL 62 (220)
T ss_pred CeEEEEEEEcCCCC-----------------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence 46899999886210 1146999999999999999999999999999999999976 46799999
Q ss_pred ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545 160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS 239 (691)
Q Consensus 160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 239 (691)
++|+++.. .++.++||+|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..++.+ +.||
T Consensus 63 ~~g~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 133 (220)
T cd03293 63 VDGEPVTG-PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLS 133 (220)
T ss_pred ECCEECcc-ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCC
Confidence 99998753 4678999999999999999999998865432 2233444567889999999987777665 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEec--CCeE
Q 005545 240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLS--EGSP 316 (691)
Q Consensus 240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~--~G~i 316 (691)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|+ +|++
T Consensus 134 gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i 212 (220)
T cd03293 134 GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRI 212 (220)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEE
Confidence 9999999999999999999999999999999999999999999975 5899999999974 5778999999999 7999
Q ss_pred EEecCHh
Q 005545 317 IYSGRAA 323 (691)
Q Consensus 317 v~~G~~~ 323 (691)
++.++.+
T Consensus 213 ~~~~~~~ 219 (220)
T cd03293 213 VAEVEVD 219 (220)
T ss_pred EEEEEec
Confidence 9887653
No 58
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=6.9e-44 Score=360.39 Aligned_cols=210 Identities=31% Similarity=0.526 Sum_probs=182.9
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 i~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~v~ 58 (213)
T cd03301 1 VELENVTKRFGN---------------------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE-EPTSGRIY 58 (213)
T ss_pred CEEEeeEEEECC---------------------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence 468999998861 35899999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..++.+ +.
T Consensus 59 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03301 59 IGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQ 130 (213)
T ss_pred ECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hh
Confidence 99998753 23457999999999998999999998865432 2234455567889999999987777665 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874 899999999964 57789999999999999
Q ss_pred EEec
Q 005545 317 IYSG 320 (691)
Q Consensus 317 v~~G 320 (691)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
No 59
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=374.09 Aligned_cols=223 Identities=26% Similarity=0.442 Sum_probs=189.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+... ...+.+|+||||+|++||++||+||||||||||+++|+|++ .+.+|+|
T Consensus 2 ~l~~~~l~~~y~~~~----------------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~-~p~~G~i 64 (287)
T PRK13637 2 SIKIENLTHIYMEGT----------------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KPTSGKI 64 (287)
T ss_pred EEEEEEEEEECCCCC----------------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCccEE
Confidence 489999999996311 01245999999999999999999999999999999999987 4779999
Q ss_pred EECCEeCCh------hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccc
Q 005545 159 TYNGRQFSS------SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT--RCRNSV 229 (691)
Q Consensus 159 ~~~G~~~~~------~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ 229 (691)
.++|+++.. ..++.+|||+|++. .+...||+||+.+..... ..++++..++++++++.+||. +..++.
T Consensus 65 ~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 141 (287)
T PRK13637 65 IIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS 141 (287)
T ss_pred EECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC
Confidence 999998753 34678999999973 333579999999865322 345566667889999999997 455655
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v 308 (691)
+ +.||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||++. ++.++||++
T Consensus 142 ~-----~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv 215 (287)
T PRK13637 142 P-----FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRI 215 (287)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 4 579999999999999999999999999999999999999999999999875 999999999964 577899999
Q ss_pred EEecCCeEEEecCHhHHHH
Q 005545 309 VVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~~ 327 (691)
++|++|++++.|+++++.+
T Consensus 216 ~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 216 IVMNKGKCELQGTPREVFK 234 (287)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998754
No 60
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=8.1e-44 Score=361.69 Aligned_cols=216 Identities=32% Similarity=0.512 Sum_probs=187.0
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|... ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus 1 l~~~~l~~~~~~~-------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 60 (220)
T cd03263 1 LQIRNLTKTYKKG-------------------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPTSGTAY 60 (220)
T ss_pred CEEEeeEEEeCCC-------------------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEE
Confidence 4789999988521 135999999999999999999999999999999999976 47799999
Q ss_pred ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.++|.+..++.+ +
T Consensus 61 ~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 132 (220)
T cd03263 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----R 132 (220)
T ss_pred ECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----h
Confidence 99998743 34667999999999999999999998865432 2233444567889999999987777665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i 210 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKL 210 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEE
Confidence 6999999999999999999999999999999999999999999999986 599999999975 57789999999999999
Q ss_pred EEecCHhHH
Q 005545 317 IYSGRAAQV 325 (691)
Q Consensus 317 v~~G~~~~~ 325 (691)
++.|+++++
T Consensus 211 ~~~~~~~~~ 219 (220)
T cd03263 211 RCIGSPQEL 219 (220)
T ss_pred EecCCHHHc
Confidence 999988764
No 61
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.3e-43 Score=367.32 Aligned_cols=218 Identities=32% Similarity=0.515 Sum_probs=188.9
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|.. +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus 3 ~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i 60 (250)
T PRK11264 3 AIEVKNLVKKFHG---------------------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-QPEAGTI 60 (250)
T ss_pred cEEEeceEEEECC---------------------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEE
Confidence 5899999999861 35899999999999999999999999999999999977 4679999
Q ss_pred EECCEeCCh------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005545 159 TYNGRQFSS------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226 (691)
Q Consensus 159 ~~~G~~~~~------------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 226 (691)
.++|+++.. ..++.++|++|++.+++.+||+||+.++.... .....++..++++++++.+||.+..
T Consensus 61 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~ 138 (250)
T PRK11264 61 RVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV--KGEPKEEATARARELLAKVGLAGKE 138 (250)
T ss_pred EECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCcchh
Confidence 999988641 23568999999999999999999998754211 1223444556788999999998776
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
++.+ +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||
T Consensus 139 ~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d 212 (250)
T PRK11264 139 TSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVAD 212 (250)
T ss_pred hCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 6655 479999999999999999999999999999999999999999999999877999999999964 5778999
Q ss_pred EEEEecCCeEEEecCHhHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~ 326 (691)
++++|++|++++.|+++++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988774
No 62
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.5e-43 Score=364.76 Aligned_cols=217 Identities=27% Similarity=0.499 Sum_probs=188.9
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+. +.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus 2 l~~~~l~~~~~~---------------------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 59 (240)
T PRK09493 2 IEFKNVSKHFGP---------------------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLI 59 (240)
T ss_pred EEEEeEEEEECC---------------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence 789999998851 35999999999999999999999999999999999976 57799999
Q ss_pred ECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 160 YNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 160 ~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
++|.++.. ..++.++|++|++.+++.+||+||+.+..... ......+..+++.++++.+||++..++.+
T Consensus 60 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 134 (240)
T PRK09493 60 VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP--- 134 (240)
T ss_pred ECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh---
Confidence 99998752 24568999999999999999999998764211 12234445567889999999987777655
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++
T Consensus 135 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 211 (240)
T PRK09493 135 --SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK 211 (240)
T ss_pred --hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999877999999999965 57789999999999
Q ss_pred CeEEEecCHhHHH
Q 005545 314 GSPIYSGRAAQVM 326 (691)
Q Consensus 314 G~iv~~G~~~~~~ 326 (691)
|++++.|+.+++.
T Consensus 212 G~i~~~g~~~~~~ 224 (240)
T PRK09493 212 GRIAEDGDPQVLI 224 (240)
T ss_pred CEEEeeCCHHHHh
Confidence 9999999988764
No 63
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.6e-44 Score=364.19 Aligned_cols=216 Identities=26% Similarity=0.397 Sum_probs=183.3
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC----CCCc
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR----GKFS 155 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~----~~~~ 155 (691)
|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+++|+|+.. ++.+
T Consensus 1 i~~~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~ 59 (227)
T cd03260 1 IELRDLNVYYGD---------------------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59 (227)
T ss_pred CEEEEEEEEcCC---------------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCC
Confidence 468899998851 358999999999999999999999999999999999761 4679
Q ss_pred eEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 005545 156 GKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229 (691)
Q Consensus 156 G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 229 (691)
|+|.++|+++.. ..++.++|++|++.++ .+||+||+.++...+. .....+..++++++++.+||.+..++.
T Consensus 60 G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred eEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhcc
Confidence 999999998742 2456899999999888 7999999988654321 112223456788999999998766654
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
+. +++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .+.++||+++
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~ 211 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTA 211 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEE
Confidence 30 2579999999999999999999999999999999999999999999999887 99999999964 5778999999
Q ss_pred EecCCeEEEecCHhH
Q 005545 310 VLSEGSPIYSGRAAQ 324 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~ 324 (691)
+|++|++++.|++++
T Consensus 212 ~l~~G~i~~~g~~~~ 226 (227)
T cd03260 212 FLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEeCCEEEEecCccc
Confidence 999999999998765
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-44 Score=366.17 Aligned_cols=220 Identities=30% Similarity=0.490 Sum_probs=185.6
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|.. ++.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 59 (241)
T cd03256 1 IEVENLSKTYPN--------------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-EPTSGSVL 59 (241)
T ss_pred CEEeeEEEecCC--------------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEE
Confidence 468899988851 135999999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRL-----PKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+...... .......+..++++++++.++|.+..+
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 139 (241)
T cd03256 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY 139 (241)
T ss_pred ECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC
Confidence 99998742 245689999999999999999999987532110 001112234457888999999987666
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCC
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D 306 (691)
+.+ +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||
T Consensus 140 ~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d 213 (241)
T cd03256 140 QRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYAD 213 (241)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCC
Confidence 655 47999999999999999999999999999999999999999999999986 4899999999975 5778999
Q ss_pred EEEEecCCeEEEecCHhHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~ 326 (691)
++++|++|++++.|+++++.
T Consensus 214 ~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 214 RIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred EEEEEECCEEEeecCHHHhh
Confidence 99999999999999988763
No 65
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-43 Score=370.19 Aligned_cols=217 Identities=27% Similarity=0.416 Sum_probs=187.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+. .+.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus 4 ~l~~~~l~~~~~~--------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i 62 (274)
T PRK13647 4 IIEVEDLHFRYKD--------------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQRGRV 62 (274)
T ss_pred eEEEEEEEEEeCC--------------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEE
Confidence 5899999999851 134899999999999999999999999999999999977 4679999
Q ss_pred EECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|+++.. ..++.+||++|++. .++..||.||+.|..... ...+.+..++++++++.+||.+..++.+
T Consensus 63 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~--- 136 (274)
T PRK13647 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP--- 136 (274)
T ss_pred EECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh---
Confidence 999998753 34568999999973 445689999998864321 2344455567899999999987777765
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++|+|||++||++. .+.++||++++|++
T Consensus 137 --~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~ 213 (274)
T PRK13647 137 --YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE 213 (274)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999877999999999964 57789999999999
Q ss_pred CeEEEecCHhHH
Q 005545 314 GSPIYSGRAAQV 325 (691)
Q Consensus 314 G~iv~~G~~~~~ 325 (691)
|++++.|+++++
T Consensus 214 G~i~~~g~~~~~ 225 (274)
T PRK13647 214 GRVLAEGDKSLL 225 (274)
T ss_pred CEEEEECCHHHh
Confidence 999999998654
No 66
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.1e-43 Score=389.35 Aligned_cols=220 Identities=29% Similarity=0.463 Sum_probs=191.2
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|. .+.+|+|+||++++||+++|+||||||||||||+|+|++ ++.+|+|
T Consensus 3 ~L~~~nls~~y~---------------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll-~p~sG~I 60 (402)
T PRK09536 3 MIDVSDLSVEFG---------------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL-TPTAGTV 60 (402)
T ss_pred eEEEeeEEEEEC---------------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEE
Confidence 589999999986 245999999999999999999999999999999999987 4779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|+++.. ..++++|||+|++.+++.+||+||+.++....... .....+..++++++++.+||.+..++.+
T Consensus 61 ~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~--- 137 (402)
T PRK09536 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV--- 137 (402)
T ss_pred EECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---
Confidence 999998753 45678999999999988999999998764211000 1012344567899999999998887765
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
+.|||||||||+|||||+++|++|||||||+|||+.++.+++++|++++++|+|||+++|++. ++.++|||+++|++
T Consensus 138 --~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~ 214 (402)
T PRK09536 138 --TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD 214 (402)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 579999999999999999999999999999999999999999999999877899999999964 68899999999999
Q ss_pred CeEEEecCHhHHH
Q 005545 314 GSPIYSGRAAQVM 326 (691)
Q Consensus 314 G~iv~~G~~~~~~ 326 (691)
|++++.|++++++
T Consensus 215 G~iv~~G~~~ev~ 227 (402)
T PRK09536 215 GRVRAAGPPADVL 227 (402)
T ss_pred CEEEEecCHHHHh
Confidence 9999999999853
No 67
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.2e-43 Score=369.83 Aligned_cols=219 Identities=21% Similarity=0.427 Sum_probs=189.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+. ++.+|+
T Consensus 6 ~~l~~~~l~~~~~---------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~ 63 (269)
T PRK11831 6 NLVDMRGVSFTRG---------------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI-APDHGE 63 (269)
T ss_pred ceEEEeCeEEEEC---------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCce
Confidence 4699999999885 135899999999999999999999999999999999977 467999
Q ss_pred EEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545 158 ITYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230 (691)
Q Consensus 158 I~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 230 (691)
|.++|+++.. ..++.++|++|++.+++.+||.||+.+..... ......+..+++.++++.+||.+..++.+
T Consensus 64 i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 141 (269)
T PRK11831 64 ILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREH--TQLPAPLLHSTVMMKLEAVGLRGAAKLMP 141 (269)
T ss_pred EEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHcCChhhhhCCh
Confidence 9999998742 13567999999999999999999998764321 11234444567888999999988777765
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEE
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ ..+.++||+++
T Consensus 142 -----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~ 215 (269)
T PRK11831 142 -----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAY 215 (269)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEE
Confidence 469999999999999999999999999999999999999999999999865 89999999996 45788999999
Q ss_pred EecCCeEEEecCHhHHH
Q 005545 310 VLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~~~ 326 (691)
+|++|++++.|+++++.
T Consensus 216 ~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 216 IVADKKIVAHGSAQALQ 232 (269)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988764
No 68
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=372.63 Aligned_cols=232 Identities=27% Similarity=0.426 Sum_probs=192.6
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+.... ..+.+|+|||++|++||+++|+||||||||||+++|+|++ .+.+|+|
T Consensus 2 ~l~~~~l~~~y~~~~~----------------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i 64 (290)
T PRK13634 2 DITFQKVEHRYQYKTP----------------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL-QPTSGTV 64 (290)
T ss_pred EEEEEEEEEEECCCCc----------------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEE
Confidence 3899999999963210 1135999999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545 159 TYNGRQFSS--------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN 227 (691)
Q Consensus 159 ~~~G~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 227 (691)
.++|+++.. ..++.+|||+|++ .++ ..||+||+.|+.... ..+.++..++++++++.+||. +..+
T Consensus 65 ~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~ 140 (290)
T PRK13634 65 TIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLA 140 (290)
T ss_pred EECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhh
Confidence 999998741 3456899999986 455 479999999875422 234555566889999999996 4556
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCC
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D 306 (691)
+.+ +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++ |.|||++||++. .+.++||
T Consensus 141 ~~~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~d 214 (290)
T PRK13634 141 RSP-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYAD 214 (290)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCC
Confidence 554 579999999999999999999999999999999999999999999999864 899999999964 6788999
Q ss_pred EEEEecCCeEEEecCHhHHHH---HhhhcCCCCC
Q 005545 307 KVVVLSEGSPIYSGRAAQVMD---YFGSIGYVPG 337 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~ 337 (691)
||++|++|++++.|+++++.+ .+...+..+|
T Consensus 215 rv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 215 QIVVMHKGTVFLQGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred EEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 999999999999999988753 2334454433
No 69
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.8e-43 Score=378.78 Aligned_cols=235 Identities=25% Similarity=0.428 Sum_probs=194.9
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
++.|+++||+++|+...+..++ .+..+...+|+||||+|++||+++|+|+||||||||+++|+|++ .+.+|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~--------~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~-~p~~G 76 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWF--------WQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV-KATDG 76 (331)
T ss_pred CceEEEeCeEEEECCCCccccc--------cccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCc
Confidence 4579999999999742211000 00112346999999999999999999999999999999999987 46799
Q ss_pred EEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccc
Q 005545 157 KITYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCR 226 (691)
Q Consensus 157 ~I~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 226 (691)
+|.++|+++.. ..++.++||+|++ .++|.+||.||+.+...... ...++++..++++++++.+||. +..
T Consensus 77 ~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~ 155 (331)
T PRK15079 77 EVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLI 155 (331)
T ss_pred EEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHh
Confidence 99999998742 2456899999997 58899999999988654321 1245566677889999999994 345
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~ 305 (691)
++.+ .+|||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||+. .+.++|
T Consensus 156 ~~~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~ 229 (331)
T PRK15079 156 NRYP-----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHIS 229 (331)
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhC
Confidence 5544 579999999999999999999999999999999999999999999999874 899999999964 577899
Q ss_pred CEEEEecCCeEEEecCHhHHHH
Q 005545 306 DKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 306 D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
|+|++|++|++++.|+++++.+
T Consensus 230 dri~vl~~G~ive~g~~~~i~~ 251 (331)
T PRK15079 230 DRVLVMYLGHAVELGTYDEVYH 251 (331)
T ss_pred CEEEEEECCEEEEEcCHHHHHc
Confidence 9999999999999999988853
No 70
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-43 Score=364.52 Aligned_cols=217 Identities=28% Similarity=0.530 Sum_probs=187.4
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+.. +.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~~--------------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 59 (242)
T cd03295 1 IEFENVTKRYGGG--------------------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIF 59 (242)
T ss_pred CEEEEEEEEeCCc--------------------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEE
Confidence 4688999988620 34899999999999999999999999999999999977 47799999
Q ss_pred ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCC
Q 005545 160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR--CRNSVVGGP 233 (691)
Q Consensus 160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~ 233 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+ ..++.+
T Consensus 60 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--- 133 (242)
T cd03295 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP--- 133 (242)
T ss_pred ECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh---
Confidence 99998743 34568999999999999999999998765432 2234445567889999999985 555544
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|+
T Consensus 134 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~ 210 (242)
T cd03295 134 --HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK 210 (242)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 579999999999999999999999999999999999999999999999874 899999999974 5778999999999
Q ss_pred CCeEEEecCHhHHH
Q 005545 313 EGSPIYSGRAAQVM 326 (691)
Q Consensus 313 ~G~iv~~G~~~~~~ 326 (691)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999988764
No 71
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.3e-43 Score=360.40 Aligned_cols=214 Identities=31% Similarity=0.528 Sum_probs=183.3
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+ .+.+|+|+||++++||++||+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~---------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 58 (222)
T cd03224 1 LEVENLNAGYG---------------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL-PPRSGSIR 58 (222)
T ss_pred CEEeeEEeecC---------------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence 46889998875 135899999999999999999999999999999999987 46799999
Q ss_pred ECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCC
Q 005545 160 YNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL-GLTRCRNSVVGGP 233 (691)
Q Consensus 160 ~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~ 233 (691)
++|+++.. . .++.++|++|++.+++.+|++||+.+..... . ..+..++++++++.+ ++.+..++.+
T Consensus 59 ~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~--~~~~~~~~~~~l~~~~~l~~~~~~~~--- 130 (222)
T cd03224 59 FDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYAR---R--RAKRKARLERVYELFPRLKERRKQLA--- 130 (222)
T ss_pred ECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhc---C--chhHHHHHHHHHHHHHhhhhhhhCch---
Confidence 99988743 1 2567999999999999999999998865432 1 122344567788888 5766666655
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++
T Consensus 131 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 207 (222)
T cd03224 131 --GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER 207 (222)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC
Confidence 469999999999999999999999999999999999999999999999877899999999964 57899999999999
Q ss_pred CeEEEecCHhHHH
Q 005545 314 GSPIYSGRAAQVM 326 (691)
Q Consensus 314 G~iv~~G~~~~~~ 326 (691)
|++++.|+++++.
T Consensus 208 G~i~~~~~~~~~~ 220 (222)
T cd03224 208 GRVVLEGTAAELL 220 (222)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999887764
No 72
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-44 Score=358.29 Aligned_cols=222 Identities=29% Similarity=0.494 Sum_probs=196.0
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..++.+||+.++. ...+++||||++++||+++||||||||||||+|+|+|.+ +|++|+
T Consensus 3 ~lL~v~~l~k~FG---------------------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~ 60 (250)
T COG0411 3 PLLEVRGLSKRFG---------------------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGT 60 (250)
T ss_pred ceeeeccceeecC---------------------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCce
Confidence 3567778777664 467999999999999999999999999999999999987 578999
Q ss_pred EEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhc--------CCCC-CCHHHHHHHHHHHHHHcCCC
Q 005545 158 ITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLR--------LPKK-LTREEKIEQAEMVIMELGLT 223 (691)
Q Consensus 158 I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~--------~~~~-~~~~~~~~~v~~~l~~lgL~ 223 (691)
|.++|++++. ..+..++--||...+|++|||.||+..++..+ .+.. ...++..+++.++|+.+||.
T Consensus 61 v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~ 140 (250)
T COG0411 61 VIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG 140 (250)
T ss_pred EEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc
Confidence 9999999864 24668999999999999999999999875432 1111 13456678899999999999
Q ss_pred ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHH
Q 005545 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLY 302 (691)
Q Consensus 224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~ 302 (691)
+.+|++.| +||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|+++++ .|.||+++.||+. .+.
T Consensus 141 ~~a~~~A~-----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm 214 (250)
T COG0411 141 ELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVM 214 (250)
T ss_pred hhhcchhh-----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHh
Confidence 99999886 4999999999999999999999999999999999999999999999998 4799999999964 689
Q ss_pred hcCCEEEEecCCeEEEecCHhHHHH
Q 005545 303 RMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 303 ~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
.+||||+||+.|+++.+|+++++.+
T Consensus 215 ~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 215 GLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred hhccEEEeccCCcCcccCCHHHHhc
Confidence 9999999999999999999999853
No 73
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-43 Score=370.98 Aligned_cols=228 Identities=25% Similarity=0.414 Sum_probs=193.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+.. ..+.+|+|+|++|++||++||+||||||||||+++|+|++ .+.+|+|
T Consensus 4 ~l~~~~l~~~~~~~------------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i 64 (279)
T PRK13650 4 IIEVKNLTFKYKED------------------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-EAESGQI 64 (279)
T ss_pred eEEEEeEEEEcCCC------------------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEE
Confidence 58999999999621 0135899999999999999999999999999999999987 4779999
Q ss_pred EECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|+++.. ..++.+|||+|++. .++.+||+||+.|+.... ..+.++..++++++++.+||.+..+..+
T Consensus 65 ~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~--- 138 (279)
T PRK13650 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP--- 138 (279)
T ss_pred EECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 999998853 34678999999973 677789999998865322 3455566678899999999987777665
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. .+ ..||++++|+
T Consensus 139 --~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~ 214 (279)
T PRK13650 139 --ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK 214 (279)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999875 999999999975 45 5899999999
Q ss_pred CCeEEEecCHhHHHH---HhhhcCCC
Q 005545 313 EGSPIYSGRAAQVMD---YFGSIGYV 335 (691)
Q Consensus 313 ~G~iv~~G~~~~~~~---~f~~~g~~ 335 (691)
+|+++..|+++++.+ .+...|+.
T Consensus 215 ~G~i~~~g~~~~~~~~~~~~~~~~~~ 240 (279)
T PRK13650 215 NGQVESTSTPRELFSRGNDLLQLGLD 240 (279)
T ss_pred CCEEEEECCHHHHHcChHHHHHcCCC
Confidence 999999999988753 23344544
No 74
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=371.98 Aligned_cols=211 Identities=28% Similarity=0.457 Sum_probs=183.2
Q ss_pred CccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----h----ccccEEEEcc
Q 005545 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----S----LKRKTGFVTQ 178 (691)
Q Consensus 107 ~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~----~~~~igyv~Q 178 (691)
.++++.+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.++|+++.. . .++.++|++|
T Consensus 31 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q 109 (269)
T cd03294 31 LKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109 (269)
T ss_pred hhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccChhhhhhhhcCcEEEEec
Confidence 44566778999999999999999999999999999999999977 4679999999998742 1 1357999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCE
Q 005545 179 DDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSC 258 (691)
Q Consensus 179 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~i 258 (691)
++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+ +.|||||||||+|||||+.+|++
T Consensus 110 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 110 SFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred CcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999998865432 2233445567889999999988777766 46999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 259 LLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 259 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.+
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999764 899999999964 5788999999999999999999887743
No 75
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.7e-43 Score=358.89 Aligned_cols=209 Identities=33% Similarity=0.550 Sum_probs=178.1
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+... +.+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~~~-----------------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~ 62 (218)
T cd03255 1 IELKNLSKTYGGGG-----------------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD-RPTSGEVR 62 (218)
T ss_pred CeEeeeEEEecCCC-----------------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc-CCCceeEE
Confidence 46899999986210 0145999999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh-------h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545 160 YNGRQFSS-------S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231 (691)
Q Consensus 160 ~~G~~~~~-------~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 231 (691)
++|+++.. . .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 63 VDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred ECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-
Confidence 99998742 1 2457999999999999999999999875432 2233444567889999999987777655
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEE
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. ++. .||++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEE
Confidence 46999999999999999999999999999999999999999999999987 5899999999975 454 9999999
Q ss_pred ecCCeE
Q 005545 311 LSEGSP 316 (691)
Q Consensus 311 L~~G~i 316 (691)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
No 76
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-43 Score=374.79 Aligned_cols=233 Identities=22% Similarity=0.389 Sum_probs=193.2
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|+.... ..+.+|+|+|++|++||++||+|+||||||||+++|+|++ ++.+|+
T Consensus 20 ~~l~~~nl~~~y~~~~~----------------~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~-~p~~G~ 82 (320)
T PRK13631 20 IILRVKNLYCVFDEKQE----------------NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI-KSKYGT 82 (320)
T ss_pred ceEEEEeEEEEeCCCCc----------------ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCe
Confidence 46999999999963210 1235999999999999999999999999999999999987 477999
Q ss_pred EEECCEeCCh--------------------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 005545 158 ITYNGRQFSS--------------------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM 215 (691)
Q Consensus 158 I~~~G~~~~~--------------------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~ 215 (691)
|+++|.++.. ..++.+|||+|++ .+++ .||+||+.|+.... ..+.++..+++++
T Consensus 83 I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~ 158 (320)
T PRK13631 83 IQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKF 158 (320)
T ss_pred EEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHH
Confidence 9999987632 2467899999987 4665 59999998865321 2345555678899
Q ss_pred HHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 005545 216 VIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI 294 (691)
Q Consensus 216 ~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~ 294 (691)
+++.+||. +..++.+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|
T Consensus 159 ~l~~~gL~~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tiiivt 233 (320)
T PRK13631 159 YLNKMGLDDSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVIT 233 (320)
T ss_pred HHHHcCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 99999996 4555443 57999999999999999999999999999999999999999999999987899999999
Q ss_pred CCCchHHHhcCCEEEEecCCeEEEecCHhHHHH---HhhhcCCCCC
Q 005545 295 HQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD---YFGSIGYVPG 337 (691)
Q Consensus 295 H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~ 337 (691)
|++. .+.+.||++++|++|++++.|+++++.. .+...|...|
T Consensus 234 Hd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 234 HTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred cCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 9964 5778999999999999999999998753 2334455433
No 77
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.5e-43 Score=365.01 Aligned_cols=219 Identities=29% Similarity=0.452 Sum_probs=185.0
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|.. .+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 2 l~~~~l~~~~~~--------------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 60 (243)
T TIGR02315 2 LEVENLSKVYPN--------------------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSIL 60 (243)
T ss_pred eEEEeeeeecCC--------------------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCccEEE
Confidence 688999988851 135899999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC--C---CCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRL--P---KKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.++..... . ......+..+++.++++.+||.+..+
T Consensus 61 ~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 140 (243)
T TIGR02315 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY 140 (243)
T ss_pred ECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc
Confidence 99998742 245689999999999999999999976431100 0 00112334567888999999987766
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCC
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D 306 (691)
+.+ +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||
T Consensus 141 ~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d 214 (243)
T TIGR02315 141 QRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYAD 214 (243)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcC
Confidence 655 469999999999999999999999999999999999999999999999764 899999999965 5778999
Q ss_pred EEEEecCCeEEEecCHhHH
Q 005545 307 KVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~ 325 (691)
++++|++|++++.|+++++
T Consensus 215 ~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 215 RIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred eEEEEECCEEEecCCHHHh
Confidence 9999999999999988775
No 78
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.5e-40 Score=414.74 Aligned_cols=227 Identities=26% Similarity=0.435 Sum_probs=199.9
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
...|+++||++.|+.+ ++.+|+|+|+++++||+++|+||||||||||+|+|+|++ .|++|
T Consensus 926 ~~~L~I~nLsK~y~~~-------------------~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl-~PtsG 985 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPS-------------------GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL-PPTSG 985 (2272)
T ss_pred CceEEEEeEEEEecCC-------------------CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC-CCCce
Confidence 4579999999999521 246999999999999999999999999999999999987 47799
Q ss_pred EEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 157 KITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 157 ~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
+|.++|+++.. ..|+.+||++|++.+++.+||+||+.+.++++ ..+.++.+++++++++.+||.+..++.++
T Consensus 986 ~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~-- 1060 (2272)
T TIGR01257 986 TVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQ-- 1060 (2272)
T ss_pred EEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh--
Confidence 99999998853 35678999999999999999999999876654 23344556678999999999988887764
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
.|||||||||+||+||+.+|++|||||||+|||+.+++.+.++|++++ +|+|||++||++ +++..++||+++|++
T Consensus 1061 ---~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~ 1135 (2272)
T TIGR01257 1061 ---DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQ 1135 (2272)
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 699999999999999999999999999999999999999999999995 589999999996 467889999999999
Q ss_pred CeEEEecCHhHHHHHhhhcCC
Q 005545 314 GSPIYSGRAAQVMDYFGSIGY 334 (691)
Q Consensus 314 G~iv~~G~~~~~~~~f~~~g~ 334 (691)
|+++..|+++++.+.|+. ||
T Consensus 1136 GkL~~~Gs~~~Lk~~~g~-gy 1155 (2272)
T TIGR01257 1136 GRLYCSGTPLFLKNCFGT-GF 1155 (2272)
T ss_pred CEEEEecCHHHHHHhcCC-cE
Confidence 999999999999887753 44
No 79
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-44 Score=354.83 Aligned_cols=224 Identities=27% Similarity=0.514 Sum_probs=207.0
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|++++|++++. .+.+++|+||++++|++++++|||||||||.+|+|.|++ .+++|+|
T Consensus 2 ~L~ie~vtK~Fg---------------------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll-e~~~G~I 59 (300)
T COG4152 2 ALEIEGVTKSFG---------------------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL-EPTEGEI 59 (300)
T ss_pred ceEEecchhccC---------------------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC-CccCceE
Confidence 467777776664 467999999999999999999999999999999999988 4779999
Q ss_pred EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCccc
Q 005545 159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI 238 (691)
Q Consensus 159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 238 (691)
.++|.+++...+.+|||+|.+..||+.+||.|.|.|.+.++ ++++++.+++++.+|+++++......+| ++|
T Consensus 60 ~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~L 131 (300)
T COG4152 60 TWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KEL 131 (300)
T ss_pred EEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHh
Confidence 99999999888889999999999999999999999998875 7888999999999999999998887776 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEE
Q 005545 239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIY 318 (691)
Q Consensus 239 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~ 318 (691)
|.|++|++.+..+++++|++++||||+|||||.+.+.+-+.+.+++++|.|||+++|.+ +.+.++||++++|++|+.|.
T Consensus 132 SKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~ 210 (300)
T COG4152 132 SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVL 210 (300)
T ss_pred hhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999996 56999999999999999999
Q ss_pred ecCHhHHHHHhhhcC
Q 005545 319 SGRAAQVMDYFGSIG 333 (691)
Q Consensus 319 ~G~~~~~~~~f~~~g 333 (691)
+|+.+++..-|+.--
T Consensus 211 ~G~v~~ir~~~Gkk~ 225 (300)
T COG4152 211 YGTVEDIRRSFGKKR 225 (300)
T ss_pred eccHHHHHHhcCCce
Confidence 999999988666543
No 80
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2e-43 Score=355.86 Aligned_cols=206 Identities=32% Similarity=0.515 Sum_probs=180.0
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~---------------------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 58 (208)
T cd03268 1 LKTNDLTKTYGK---------------------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI-KPDSGEIT 58 (208)
T ss_pred CEEEEEEEEECC---------------------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEE
Confidence 468999998851 35999999999999999999999999999999999977 47799999
Q ss_pred ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+....+ .. ..++++++++.++|.+..++.+ +.
T Consensus 59 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (208)
T cd03268 59 FDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKV-----KG 126 (208)
T ss_pred ECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhH-----hh
Confidence 99987743 34567999999999999999999998865422 11 1346788999999988777665 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI 317 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv 317 (691)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+++|++++|++|+++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLI 205 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888899999999964 577899999999999998
Q ss_pred Eec
Q 005545 318 YSG 320 (691)
Q Consensus 318 ~~G 320 (691)
+.|
T Consensus 206 ~~g 208 (208)
T cd03268 206 EEG 208 (208)
T ss_pred ecC
Confidence 765
No 81
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-43 Score=373.78 Aligned_cols=223 Identities=24% Similarity=0.410 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+... .....+|+|+|++|++||++||+||||||||||+++|+|++ ++.+|+|
T Consensus 2 ~i~~~~l~~~y~~~~----------------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~-~p~~G~i 64 (305)
T PRK13651 2 QIKVKNIVKIFNKKL----------------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL-LPDTGTI 64 (305)
T ss_pred EEEEEEEEEEECCCC----------------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEE
Confidence 489999999996321 01235899999999999999999999999999999999987 4679999
Q ss_pred EECCEeCC----------------------------hhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHH
Q 005545 159 TYNGRQFS----------------------------SSLKRKTGFVTQDD-VLYPHLTVLETLSYAALLRLPKKLTREEK 209 (691)
Q Consensus 159 ~~~G~~~~----------------------------~~~~~~igyv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~ 209 (691)
+++|++.. ...++.+|||+|++ ..+...||+||+.|+.... ...+++.
T Consensus 65 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~ 141 (305)
T PRK13651 65 EWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEA 141 (305)
T ss_pred EEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHH
Confidence 99987541 13466899999985 2333579999999875432 3455666
Q ss_pred HHHHHHHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc
Q 005545 210 IEQAEMVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR 288 (691)
Q Consensus 210 ~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~ 288 (691)
.++++++++.+||. +..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+
T Consensus 142 ~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 216 (305)
T PRK13651 142 KKRAAKYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK 216 (305)
T ss_pred HHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 77899999999996 5666655 47999999999999999999999999999999999999999999999987899
Q ss_pred EEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 289 tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
|||++|||+. .+.+.|||+++|++|++++.|+++++..
T Consensus 217 tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 217 TIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred EEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999964 5789999999999999999999998753
No 82
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=351.11 Aligned_cols=217 Identities=30% Similarity=0.508 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+..|. ...+|+|||+++++||+++|+|+||+|||||||+|+|+. ++.+|+|
T Consensus 3 mL~v~~l~~~YG---------------------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~-~~~~G~I 60 (237)
T COG0410 3 MLEVENLSAGYG---------------------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV-RPRSGRI 60 (237)
T ss_pred ceeEEeEeeccc---------------------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeeE
Confidence 588999998886 246999999999999999999999999999999999977 4569999
Q ss_pred EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccC
Q 005545 159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-LTRCRNSVVGG 232 (691)
Q Consensus 159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~ 232 (691)
.++|++++. ..|+.++||||...+||.|||+|||..++..+.. ++......+++.+.|- |.+.++++.|
T Consensus 61 ~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG- 135 (237)
T COG0410 61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG- 135 (237)
T ss_pred EECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-
Confidence 999999964 3577999999999999999999999987654311 1112222677777774 6667777766
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
.|||||||.++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++-++. ..+.+++||.++|
T Consensus 136 ----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvl 210 (237)
T COG0410 136 ----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVL 210 (237)
T ss_pred ----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEE
Confidence 49999999999999999999999999999999999999999999999975 78999998885 5688999999999
Q ss_pred cCCeEEEecCHhHHHH
Q 005545 312 SEGSPIYSGRAAQVMD 327 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~~ 327 (691)
.+|+++++|+.+++.+
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999998853
No 83
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.9e-43 Score=358.46 Aligned_cols=220 Identities=48% Similarity=0.768 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCce
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--KFSG 156 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~~~G 156 (691)
.++|+||++.++... ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++. +.+|
T Consensus 3 ~~~~~~~~~~~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G 65 (226)
T cd03234 3 VLPWWDVGLKAKNWN-----------------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSG 65 (226)
T ss_pred cceeecceeeeecCc-----------------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCce
Confidence 367999999996311 135699999999999999999999999999999999998741 6799
Q ss_pred EEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCC
Q 005545 157 KITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM-VIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 157 ~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~ 234 (691)
+|.++|+++.. ..++.++|++|++.+++.+||+||+.+......+.....+...+++++ .++.+++.+..++.+
T Consensus 66 ~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (226)
T cd03234 66 QILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV---- 141 (226)
T ss_pred EEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc----
Confidence 99999998754 456789999999999999999999998754432222222233334555 899999887666554
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.++||++++|++|
T Consensus 142 -~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 142 -KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred -cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 5799999999999999999999999999999999999999999999998778999999999755688999999999999
Q ss_pred eEEEec
Q 005545 315 SPIYSG 320 (691)
Q Consensus 315 ~iv~~G 320 (691)
++++.|
T Consensus 221 ~i~~~g 226 (226)
T cd03234 221 EIVYSG 226 (226)
T ss_pred EEEecC
Confidence 999875
No 84
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-43 Score=358.78 Aligned_cols=217 Identities=31% Similarity=0.457 Sum_probs=183.7
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|+... ..+.+|+|+||+|++||+++|+||||||||||+++|+|++ ++++|+
T Consensus 4 ~~l~~~~l~~~~~~~~-----------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~ 65 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS-----------------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-TPTSGD 65 (233)
T ss_pred ceEEEEeEEEEcCCCC-----------------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceE
Confidence 3699999999996210 0135999999999999999999999999999999999977 477999
Q ss_pred EEECCEeCCh----h---c-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 005545 158 ITYNGRQFSS----S---L-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229 (691)
Q Consensus 158 I~~~G~~~~~----~---~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 229 (691)
|+++|+++.. . . ++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..++.
T Consensus 66 i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~ 142 (233)
T PRK11629 66 VIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR 142 (233)
T ss_pred EEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC
Confidence 9999998753 1 2 257999999999999999999998865432 223344556788999999998777665
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v 308 (691)
+ +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.. +|++
T Consensus 143 ~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~ 215 (233)
T PRK11629 143 P-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQ 215 (233)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEE
Confidence 5 46999999999999999999999999999999999999999999999976 5899999999975 4544 6899
Q ss_pred EEecCCeEEEecCH
Q 005545 309 VVLSEGSPIYSGRA 322 (691)
Q Consensus 309 ~~L~~G~iv~~G~~ 322 (691)
++|++|++++.|+.
T Consensus 216 ~~l~~G~i~~~~~~ 229 (233)
T PRK11629 216 LEMRDGRLTAELSL 229 (233)
T ss_pred EEEECCEEEEEecc
Confidence 99999999988763
No 85
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.2e-43 Score=355.77 Aligned_cols=206 Identities=33% Similarity=0.527 Sum_probs=179.0
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+. ++.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 2 l~~~~l~~~~~~--------------------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~ 60 (214)
T TIGR02673 2 IEFHNVSKAYPG--------------------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL-TPSRGQVR 60 (214)
T ss_pred EEEEeeeEEeCC--------------------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence 789999999841 135999999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
++|+++.. ..++.++|++|++.+++.+||.||+.+....+ .....+..++++++++.++|.+..++.+
T Consensus 61 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (214)
T TIGR02673 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-- 135 (214)
T ss_pred ECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh--
Confidence 99998742 24568999999999999999999998875432 2233444567889999999987666655
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|+
T Consensus 136 ---~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~ 211 (214)
T TIGR02673 136 ---EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILD 211 (214)
T ss_pred ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEec
Confidence 469999999999999999999999999999999999999999999999877999999999974 5778999999999
Q ss_pred CCe
Q 005545 313 EGS 315 (691)
Q Consensus 313 ~G~ 315 (691)
+|+
T Consensus 212 ~G~ 214 (214)
T TIGR02673 212 DGR 214 (214)
T ss_pred CCC
Confidence 985
No 86
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=361.22 Aligned_cols=218 Identities=28% Similarity=0.491 Sum_probs=189.1
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus 3 ~l~~~~l~~~~~~---------------------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i 60 (241)
T PRK10895 3 TLTAKNLAKAYKG---------------------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-PRDAGNI 60 (241)
T ss_pred eEEEeCcEEEeCC---------------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence 5889999998851 35999999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|.++.. ..++.++|++|++.+++.+||.||+.+....+ .....++..++++++++.+||.+..++.+
T Consensus 61 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (241)
T PRK10895 61 IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSMG--- 135 (241)
T ss_pred EECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcch---
Confidence 999998742 23568999999999999999999998754322 12233445567889999999987666554
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++
T Consensus 136 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~ 212 (241)
T PRK10895 136 --QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ 212 (241)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC
Confidence 579999999999999999999999999999999999999999999999878999999999964 57899999999999
Q ss_pred CeEEEecCHhHHH
Q 005545 314 GSPIYSGRAAQVM 326 (691)
Q Consensus 314 G~iv~~G~~~~~~ 326 (691)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
No 87
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-43 Score=369.74 Aligned_cols=222 Identities=25% Similarity=0.454 Sum_probs=188.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+.... ..+.+|+|||++|++||+++|+||||||||||+++|+|++ .+.+|+|
T Consensus 2 ~l~~~~l~~~y~~~~~----------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-~p~~G~i 64 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP----------------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-KPTTGTV 64 (286)
T ss_pred EEEEEEEEEEECCCCc----------------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEE
Confidence 4899999999962110 1135999999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545 159 TYNGRQFSS--------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN 227 (691)
Q Consensus 159 ~~~G~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 227 (691)
.++|+++.. ..++.+|||+|++ .+++ .||.||+.|+.... ..+.++..++++++++.+||. +..+
T Consensus 65 ~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~ 140 (286)
T PRK13646 65 TVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMS 140 (286)
T ss_pred EECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 999998742 3567899999986 4565 59999999865321 234555667889999999996 5666
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCC
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D 306 (691)
+.+ +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.++|+++++ .|+|||++||++. .+.++||
T Consensus 141 ~~~-----~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~d 214 (286)
T PRK13646 141 QSP-----FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYAD 214 (286)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCC
Confidence 554 57999999999999999999999999999999999999999999999986 4899999999964 5778999
Q ss_pred EEEEecCCeEEEecCHhHHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~ 327 (691)
++++|++|++++.|+++++.+
T Consensus 215 ri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 215 EVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999988754
No 88
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.8e-43 Score=355.07 Aligned_cols=207 Identities=29% Similarity=0.473 Sum_probs=179.3
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~--------------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 59 (214)
T cd03292 1 IEFINVTKTYPN--------------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-LPTSGTIR 59 (214)
T ss_pred CEEEEEEEEeCC--------------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEE
Confidence 468899998851 135899999999999999999999999999999999976 47799999
Q ss_pred ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
++|+++.. ..++.++|++|++.+++.+|++||+.+....+ ....++..++++++++.+||++..++.+
T Consensus 60 ~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (214)
T cd03292 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-- 134 (214)
T ss_pred ECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh--
Confidence 99998742 24568999999999999999999998875432 2234445567889999999987777655
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|+
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~ 210 (214)
T cd03292 135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALE 210 (214)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 469999999999999999999999999999999999999999999999877999999999964 5778999999999
Q ss_pred CCeE
Q 005545 313 EGSP 316 (691)
Q Consensus 313 ~G~i 316 (691)
+|++
T Consensus 211 ~G~~ 214 (214)
T cd03292 211 RGKL 214 (214)
T ss_pred CCcC
Confidence 9974
No 89
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=8.2e-43 Score=358.40 Aligned_cols=216 Identities=34% Similarity=0.539 Sum_probs=186.6
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+. +.+|+|+|++|++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus 2 l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~ 59 (236)
T TIGR03864 2 LEVAGLSFAYGA---------------------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-VAQEGQIS 59 (236)
T ss_pred EEEEeeEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEE
Confidence 688999998851 35999999999999999999999999999999999976 57799999
Q ss_pred ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
++|.++.. ..++.++|++|++.+++.+|++||+.+....+ .....+..++++++++.+||.+..++.++
T Consensus 60 ~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 60 VAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred ECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----
Confidence 99988743 23357999999999888999999998765432 22344445678899999999877776654
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
.||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .+|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCe
Confidence 6999999999999999999999999999999999999999999999985 58999999999754 54 599999999999
Q ss_pred EEEecCHhHHHH
Q 005545 316 PIYSGRAAQVMD 327 (691)
Q Consensus 316 iv~~G~~~~~~~ 327 (691)
+++.|+++++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887754
No 90
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7.3e-43 Score=361.20 Aligned_cols=216 Identities=25% Similarity=0.454 Sum_probs=185.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC----
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF---- 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~---- 154 (691)
.|+++||+++|.. +.+|+|+||+|++||+++|+|+||||||||+++|+|++. +.
T Consensus 1 ~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~~~~ 58 (247)
T TIGR00972 1 AIEIENLNLFYGE---------------------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-LVPGVR 58 (247)
T ss_pred CEEEEEEEEEECC---------------------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCC
Confidence 3789999999861 248999999999999999999999999999999999874 55
Q ss_pred -ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC----
Q 005545 155 -SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT---- 223 (691)
Q Consensus 155 -~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---- 223 (691)
+|+|.++|+++.. ..++.++|++|++.+++ +||+||+.+....+ ......+..++++++++.+||.
T Consensus 59 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 135 (247)
T TIGR00972 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAALWDEVK 135 (247)
T ss_pred CceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCcchh
Confidence 9999999998742 24568999999999988 99999998865432 1123445556788999999997
Q ss_pred ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~ 303 (691)
+..++.+ +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. ++.+
T Consensus 136 ~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~-~~~~ 208 (247)
T TIGR00972 136 DRLHDSA-----LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQ-QAAR 208 (247)
T ss_pred hHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHH-HHHH
Confidence 5555544 579999999999999999999999999999999999999999999999874 89999999964 5778
Q ss_pred cCCEEEEecCCeEEEecCHhHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
++|++++|++|++++.|+++++.
T Consensus 209 ~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 209 ISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988774
No 91
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-43 Score=374.19 Aligned_cols=230 Identities=27% Similarity=0.404 Sum_probs=193.2
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||++.|....+. + ...+...+|+||||+|++||++||+|+||||||||+++|+|++ ++.+|+
T Consensus 4 ~~l~v~nl~~~~~~~~~~--~---------~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~-~p~~G~ 71 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGL--F---------KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE-TPTGGE 71 (327)
T ss_pred ceEEEeeeEEEEcCCCCc--c---------ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC-CCCCcE
Confidence 469999999999742110 0 0011246999999999999999999999999999999999987 467999
Q ss_pred EEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccc
Q 005545 158 ITYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRN 227 (691)
Q Consensus 158 I~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~ 227 (691)
|.++|+++.. ..++.++||+|++ .+.|.+||.+++....... ....+.+..+++.++++.+||.+ ..+
T Consensus 72 i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~ 149 (327)
T PRK11308 72 LYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYD 149 (327)
T ss_pred EEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhc
Confidence 9999998742 2456899999998 5899999999997754432 12345566678999999999963 455
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCC
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D 306 (691)
+.+ ++|||||||||+|||||+.+|++||+||||+|||..++.+++++|++++++ |.|||++|||.. .+.++||
T Consensus 150 ~~p-----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~ad 223 (327)
T PRK11308 150 RYP-----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIAD 223 (327)
T ss_pred CCC-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCC
Confidence 544 579999999999999999999999999999999999999999999999874 999999999964 5778999
Q ss_pred EEEEecCCeEEEecCHhHHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~ 327 (691)
+|++|++|++++.|+.+++.+
T Consensus 224 rv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 224 EVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEEEECCEEEEECCHHHHhc
Confidence 999999999999999998854
No 92
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-43 Score=369.35 Aligned_cols=222 Identities=30% Similarity=0.482 Sum_probs=190.6
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
.|..|+++||+++|+. ++.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+
T Consensus 2 ~~~~l~~~~l~~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~-~p~~ 60 (283)
T PRK13636 2 EDYILKVEELNYNYSD--------------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL-KPSS 60 (283)
T ss_pred CCceEEEEeEEEEeCC--------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 3457999999999951 135999999999999999999999999999999999977 4779
Q ss_pred eEEEECCEeCC------hhccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545 156 GKITYNGRQFS------SSLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228 (691)
Q Consensus 156 G~I~~~G~~~~------~~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 228 (691)
|+|.++|+++. ...++.+||++|++. .+...||+||+.+..... ..+..+..++++++++.+||.+..++
T Consensus 61 G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~ 137 (283)
T PRK13636 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDK 137 (283)
T ss_pred cEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhC
Confidence 99999999873 135678999999973 334579999998764321 23455555678999999999887776
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~ 307 (691)
.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||+
T Consensus 138 ~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dr 211 (283)
T PRK13636 138 PT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDN 211 (283)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 65 579999999999999999999999999999999999999999999999875 899999999964 57789999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++..
T Consensus 212 i~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 212 VFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEEEECCEEEEeCCHHHHhc
Confidence 99999999999999988754
No 93
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=9.4e-43 Score=362.54 Aligned_cols=219 Identities=28% Similarity=0.421 Sum_probs=188.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
-.|+++||++.|+. +.+|+|+||++++||+++|+|+||||||||+++|+|++ ++.+|+
T Consensus 4 ~~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~ 61 (257)
T PRK10619 4 NKLNVIDLHKRYGE---------------------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGS 61 (257)
T ss_pred ccEEEeeeEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeE
Confidence 35899999999861 35999999999999999999999999999999999977 467999
Q ss_pred EEECCEeCCh-----------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 005545 158 ITYNGRQFSS-----------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL 220 (691)
Q Consensus 158 I~~~G~~~~~-----------------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 220 (691)
|.++|+++.. ..++.++|++|++.+++.+||+||+.++.... . .....+..+++.++++.+
T Consensus 62 i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~ 139 (257)
T PRK10619 62 IVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV-L-GLSKQEARERAVKYLAKV 139 (257)
T ss_pred EEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHHc
Confidence 9999987631 23568999999999999999999998754211 1 223445566788999999
Q ss_pred CCCccc-cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545 221 GLTRCR-NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS 299 (691)
Q Consensus 221 gL~~~~-~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~ 299 (691)
||.+.. ++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 140 gl~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~- 213 (257)
T PRK10619 140 GIDERAQGKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG- 213 (257)
T ss_pred CCChhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-
Confidence 997653 4433 579999999999999999999999999999999999999999999999877999999999964
Q ss_pred HHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545 300 RLYRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 300 ~i~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
.+.++||++++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 577899999999999999999988764
No 94
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-43 Score=360.06 Aligned_cols=216 Identities=27% Similarity=0.478 Sum_probs=185.3
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+
T Consensus 4 ~~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~ 61 (237)
T PRK11614 4 VMLSFDKVSAHYGK---------------------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-RATSGR 61 (237)
T ss_pred cEEEEEeEEEeeCC---------------------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCce
Confidence 36999999998851 35899999999999999999999999999999999976 577999
Q ss_pred EEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccc
Q 005545 158 ITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL-GLTRCRNSVVG 231 (691)
Q Consensus 158 I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg 231 (691)
|.++|+++.. ..++.++|++|++.+++.+||.||+.++.... ...+..++++++++.+ ++.+..++.+
T Consensus 62 i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~- 135 (237)
T PRK11614 62 IVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA- 135 (237)
T ss_pred EEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-
Confidence 9999998743 24567999999999999999999998754221 1222334567778877 4765555544
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|
T Consensus 136 ----~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 210 (237)
T PRK11614 136 ----GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVL 210 (237)
T ss_pred ----hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEE
Confidence 469999999999999999999999999999999999999999999999888999999999964 578999999999
Q ss_pred cCCeEEEecCHhHHH
Q 005545 312 SEGSPIYSGRAAQVM 326 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~ 326 (691)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 211 ENGHVVLEDTGDALL 225 (237)
T ss_pred eCCEEEeeCCHHHHh
Confidence 999999999998874
No 95
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-42 Score=374.13 Aligned_cols=229 Identities=29% Similarity=0.446 Sum_probs=192.3
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--C
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK--F 154 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~--~ 154 (691)
...|+++||+++|.... +...+|+||||+|++||++||+|+||||||||+++|+|++.+. .
T Consensus 10 ~~~L~i~~l~~~~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~ 72 (330)
T PRK09473 10 DALLDVKDLRVTFSTPD-----------------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRI 72 (330)
T ss_pred CceEEEeCeEEEEecCC-----------------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCC
Confidence 35799999999996321 1245999999999999999999999999999999999987432 4
Q ss_pred ceEEEECCEeCCh----h---cc-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005545 155 SGKITYNGRQFSS----S---LK-RKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224 (691)
Q Consensus 155 ~G~I~~~G~~~~~----~---~~-~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 224 (691)
+|+|.++|+++.. . .| +.++||+|++ .++|.+|+.+++....... ...++++..+++.++++.+||.+
T Consensus 73 sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~L~~vgL~~ 150 (330)
T PRK09473 73 GGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH--KGMSKAEAFEESVRMLDAVKMPE 150 (330)
T ss_pred CeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999998742 1 22 4799999998 6889999999997654332 12355666678899999999975
Q ss_pred cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHh
Q 005545 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYR 303 (691)
Q Consensus 225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~ 303 (691)
..+. . +.++++|||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||+. .+.+
T Consensus 151 ~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~ 227 (330)
T PRK09473 151 ARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAG 227 (330)
T ss_pred hHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHH
Confidence 3322 1 2355789999999999999999999999999999999999999999999999875 899999999964 5778
Q ss_pred cCCEEEEecCCeEEEecCHhHHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
++|++++|++|++++.|+++++..
T Consensus 228 ~~Dri~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 228 ICDKVLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred hCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999998854
No 96
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=367.69 Aligned_cols=222 Identities=28% Similarity=0.435 Sum_probs=188.6
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||++.|..... ..+.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus 2 ~i~~~~l~~~~~~~~~----------------~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~-~p~~G~i 64 (287)
T PRK13641 2 SIKFENVDYIYSPGTP----------------MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL-KPSSGTI 64 (287)
T ss_pred EEEEEEEEEEcCCCCC----------------ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEE
Confidence 5889999999962110 0135999999999999999999999999999999999977 4789999
Q ss_pred EECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545 159 TYNGRQFSS--------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN 227 (691)
Q Consensus 159 ~~~G~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 227 (691)
.++|+++.. ..++.++|++|++ .++ .+||.||+.++.... ....++..++++++++.+||. +..+
T Consensus 65 ~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~ 140 (287)
T PRK13641 65 TIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLIS 140 (287)
T ss_pred EECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhh
Confidence 999998732 2356899999997 355 589999998765422 234555566789999999996 5666
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.+ +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus 141 ~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~ 214 (287)
T PRK13641 141 KSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADD 214 (287)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 655 469999999999999999999999999999999999999999999999877999999999964 57899999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++..
T Consensus 215 v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 215 VLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred EEEEECCEEEEeCCHHHHhc
Confidence 99999999999999888753
No 97
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=358.51 Aligned_cols=216 Identities=30% Similarity=0.472 Sum_probs=186.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||++.|.. +.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++.+|+|
T Consensus 2 ~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i 59 (242)
T PRK11124 2 SIQLNGINCFYGA---------------------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTL 59 (242)
T ss_pred EEEEEeeEEEECC---------------------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence 5899999999861 35999999999999999999999999999999999976 5679999
Q ss_pred EECCEeCC----------hhccccEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 159 TYNGRQFS----------SSLKRKTGFVTQDDVLYPHLTVLETLSYAA-LLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 159 ~~~G~~~~----------~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
.++|+++. ...++.++|++|++.+++.+||.||+.+.. ... .....+..+++.++++.+||.+..+
T Consensus 60 ~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 136 (242)
T PRK11124 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYAD 136 (242)
T ss_pred EECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhh
Confidence 99999762 124568999999999999999999997532 211 1233444567889999999987777
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+++|+
T Consensus 137 ~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 137 RFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 655 479999999999999999999999999999999999999999999999877999999999975 56788999
Q ss_pred EEEecCCeEEEecCHhHH
Q 005545 308 VVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~ 325 (691)
+++|++|++++.|+++++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999988764
No 98
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-43 Score=353.63 Aligned_cols=208 Identities=33% Similarity=0.549 Sum_probs=180.5
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|.. +.+|+|+||++++| +++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 i~~~~~~~~~~~---------------------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 57 (211)
T cd03264 1 LQLENLTKRYGK---------------------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT-PPSSGTIR 57 (211)
T ss_pred CEEEEEEEEECC---------------------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC-CCCccEEE
Confidence 478999998851 35999999999999 99999999999999999999977 46799999
Q ss_pred ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+....+ ...+++..++++++++.+||.+..++.+ .
T Consensus 58 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 129 (211)
T cd03264 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----G 129 (211)
T ss_pred ECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----h
Confidence 99987643 34678999999999999999999998865432 2233444567889999999987777665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|++
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKL 207 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEE
Confidence 6999999999999999999999999999999999999999999999986 589999999964 57789999999999999
Q ss_pred EEec
Q 005545 317 IYSG 320 (691)
Q Consensus 317 v~~G 320 (691)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
No 99
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=361.58 Aligned_cols=218 Identities=24% Similarity=0.398 Sum_probs=185.4
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---- 152 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---- 152 (691)
...|+++||++.|.. +.+|+|+||+|++||++||+|+||||||||+++|+|+.++
T Consensus 10 ~~~l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~ 68 (258)
T PRK14268 10 QPQIKVENLNLWYGE---------------------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68 (258)
T ss_pred ceeEEEeeeEEEeCC---------------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCC
Confidence 347999999998851 3589999999999999999999999999999999997643
Q ss_pred CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC---
Q 005545 153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT--- 223 (691)
Q Consensus 153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--- 223 (691)
+++|+|.++|+++.. ..++.++|++|++.+++ +||+||+.+....+ ..+.++..++++++++.+++.
T Consensus 69 ~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~ 144 (258)
T PRK14268 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDET 144 (258)
T ss_pred CcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcch
Confidence 379999999988642 24568999999998887 89999999865332 223444455788899999984
Q ss_pred -ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHH
Q 005545 224 -RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLY 302 (691)
Q Consensus 224 -~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~ 302 (691)
+..++.+ +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. .+.
T Consensus 145 ~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~ 217 (258)
T PRK14268 145 SDRLKSPA-----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAA 217 (258)
T ss_pred hhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHH
Confidence 3334433 57999999999999999999999999999999999999999999999975 799999999964 577
Q ss_pred hcCCEEEEecCCeEEEecCHhHHH
Q 005545 303 RMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 303 ~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
++||++++|++|++++.|+++++.
T Consensus 218 ~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 218 RISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHh
Confidence 899999999999999999998874
No 100
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=365.39 Aligned_cols=220 Identities=28% Similarity=0.437 Sum_probs=190.1
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||++.|... .+.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+
T Consensus 4 ~~l~~~~l~~~~~~~-------------------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~-~p~~G~ 63 (279)
T PRK13635 4 EIIRVEHISFRYPDA-------------------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL-LPEAGT 63 (279)
T ss_pred ceEEEEEEEEEeCCC-------------------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcE
Confidence 469999999999521 135899999999999999999999999999999999987 467999
Q ss_pred EEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
|.++|+++.. ..++.+||++|++. +++..||.||+.+..... ....++..++++++++.+||.+..++.+
T Consensus 64 i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (279)
T PRK13635 64 ITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-- 138 (279)
T ss_pred EEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc--
Confidence 9999998753 34568999999973 666789999998865332 2344555677899999999988777766
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+. .||++++|
T Consensus 139 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l 213 (279)
T PRK13635 139 ---HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVM 213 (279)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEE
Confidence 469999999999999999999999999999999999999999999999875 899999999975 454 59999999
Q ss_pred cCCeEEEecCHhHHHH
Q 005545 312 SEGSPIYSGRAAQVMD 327 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~~ 327 (691)
++|++++.|+.+++..
T Consensus 214 ~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 214 NKGEILEEGTPEEIFK 229 (279)
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999988754
No 101
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=360.80 Aligned_cols=221 Identities=23% Similarity=0.396 Sum_probs=187.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||++.|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+
T Consensus 4 ~~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~ 61 (255)
T PRK11300 4 PLLSVSGLMMRFGG---------------------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-KPTGGT 61 (255)
T ss_pred ceEEEeeEEEEECC---------------------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCcce
Confidence 46999999998851 35999999999999999999999999999999999976 577999
Q ss_pred EEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-----------C-CCCHHHHHHHHHHHHHHc
Q 005545 158 ITYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-----------K-KLTREEKIEQAEMVIMEL 220 (691)
Q Consensus 158 I~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-----------~-~~~~~~~~~~v~~~l~~l 220 (691)
|.++|+++.. . .+..++|++|++.+++.+||+||+.++...... . .....+..++++++++.+
T Consensus 62 i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (255)
T PRK11300 62 ILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141 (255)
T ss_pred EEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC
Confidence 9999998743 1 234699999999999999999999986421100 0 001123345678899999
Q ss_pred CCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCch
Q 005545 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSS 299 (691)
Q Consensus 221 gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~ 299 (691)
||.+..++.+ +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.
T Consensus 142 gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~- 215 (255)
T PRK11300 142 GLLEHANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK- 215 (255)
T ss_pred ChhhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-
Confidence 9987777665 469999999999999999999999999999999999999999999999875 899999999964
Q ss_pred HHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545 300 RLYRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 300 ~i~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
++.++||++++|++|++++.|+++++.
T Consensus 216 ~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 216 LVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred HHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 577899999999999999999988763
No 102
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=365.00 Aligned_cols=218 Identities=24% Similarity=0.399 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+++|.. +.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus 1 ml~~~~l~~~~~~---------------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i 58 (271)
T PRK13638 1 MLATSDLWFRYQD---------------------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL-RPQKGAV 58 (271)
T ss_pred CeEEEEEEEEcCC---------------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCccEE
Confidence 3789999999851 34899999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh------hccccEEEEccCCCC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545 159 TYNGRQFSS------SLKRKTGFVTQDDVL-YPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231 (691)
Q Consensus 159 ~~~G~~~~~------~~~~~igyv~Q~~~l-~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 231 (691)
.++|+++.. ..++.++||+|++.. +...|+.||+.+..... ....++..++++++++.+||.+..++.+
T Consensus 59 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 134 (271)
T PRK13638 59 LWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI- 134 (271)
T ss_pred EECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-
Confidence 999998731 245679999999752 34568999998764322 2234444567888999999987777655
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|
T Consensus 135 ----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l 209 (271)
T PRK13638 135 ----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVL 209 (271)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999999877899999999964 577899999999
Q ss_pred cCCeEEEecCHhHHHH
Q 005545 312 SEGSPIYSGRAAQVMD 327 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~~ 327 (691)
++|++++.|+++++..
T Consensus 210 ~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 210 RQGQILTHGAPGEVFA 225 (271)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988743
No 103
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.3e-42 Score=353.57 Aligned_cols=208 Identities=28% Similarity=0.444 Sum_probs=180.3
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. .+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 2 l~~~~l~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 60 (222)
T PRK10908 2 IRFEHVSKAYLG--------------------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-RPSAGKIW 60 (222)
T ss_pred EEEEeeEEEecC--------------------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence 789999999841 135899999999999999999999999999999999977 57799999
Q ss_pred ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.++|.+..++.+
T Consensus 61 ~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (222)
T PRK10908 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-- 135 (222)
T ss_pred ECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc--
Confidence 99998742 14568999999999888999999998865432 2234444557888999999987666655
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. ++...+|++++|+
T Consensus 136 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~ 211 (222)
T PRK10908 136 ---IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLS 211 (222)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999877899999999965 5778999999999
Q ss_pred CCeEE
Q 005545 313 EGSPI 317 (691)
Q Consensus 313 ~G~iv 317 (691)
+|+++
T Consensus 212 ~G~i~ 216 (222)
T PRK10908 212 DGHLH 216 (222)
T ss_pred CCEEc
Confidence 99975
No 104
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=365.18 Aligned_cols=216 Identities=26% Similarity=0.466 Sum_probs=187.1
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. .+.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+|+
T Consensus 2 l~~~~l~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~ 60 (274)
T PRK13644 2 IRLENVSYSYPD--------------------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL-RPQKGKVL 60 (274)
T ss_pred EEEEEEEEEcCC--------------------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEE
Confidence 789999999851 134899999999999999999999999999999999977 47799999
Q ss_pred ECCEeCCh-----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 160 YNGRQFSS-----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 160 ~~G~~~~~-----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
++|.++.. ..++.++|++|++. .+...||.||+.+..... ..+..+..++++++++.+||.+..++.+
T Consensus 61 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~--- 134 (274)
T PRK13644 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP--- 134 (274)
T ss_pred ECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc---
Confidence 99998742 34568999999975 356689999998765322 2345555667889999999988777665
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+ ..||++++|++
T Consensus 135 --~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~ 210 (274)
T PRK13644 135 --KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR 210 (274)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999878999999999975 45 57999999999
Q ss_pred CeEEEecCHhHHH
Q 005545 314 GSPIYSGRAAQVM 326 (691)
Q Consensus 314 G~iv~~G~~~~~~ 326 (691)
|++++.|+++++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999998874
No 105
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.6e-42 Score=357.33 Aligned_cols=221 Identities=30% Similarity=0.380 Sum_probs=184.2
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCceEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGKI 158 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G~I 158 (691)
|+++||+++|+. +.+|+|+|++|++||+++|+||||||||||+|+|+|+.. ++.+|+|
T Consensus 1 l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i 59 (243)
T TIGR01978 1 LKIKDLHVSVED---------------------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59 (243)
T ss_pred CeEeeEEEEECC---------------------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE
Confidence 478999998851 358999999999999999999999999999999999752 4779999
Q ss_pred EECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC--C--CCCHHHHHHHHHHHHHHcCCC-ccccc
Q 005545 159 TYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP--K--KLTREEKIEQAEMVIMELGLT-RCRNS 228 (691)
Q Consensus 159 ~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~--~--~~~~~~~~~~v~~~l~~lgL~-~~~~~ 228 (691)
.++|+++.. . .+..++|++|++.+++.+|++|++.+....... . .....+..++++++++.+||. +..++
T Consensus 60 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 139 (243)
T TIGR01978 60 LFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNR 139 (243)
T ss_pred EECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhccc
Confidence 999998743 2 234599999999999999999999876432110 0 112333456788999999997 34555
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc-CCE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM-FDK 307 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~-~D~ 307 (691)
.++ ..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... ||+
T Consensus 140 ~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~ 214 (243)
T TIGR01978 140 SVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDY 214 (243)
T ss_pred ccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCe
Confidence 443 249999999999999999999999999999999999999999999999878899999999975 56677 899
Q ss_pred EEEecCCeEEEecCHhHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~ 326 (691)
+++|++|++++.|+++++.
T Consensus 215 i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 215 VHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEEEeCCEEEEecCHHHhc
Confidence 9999999999999987553
No 106
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.5e-42 Score=359.83 Aligned_cols=217 Identities=29% Similarity=0.486 Sum_probs=187.3
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+|+|+|++ .+.+|+|.
T Consensus 1 i~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 58 (252)
T TIGR03005 1 VRFSDVTKRFGI---------------------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-PIDEGQIQ 58 (252)
T ss_pred CEEEEEEEEeCC---------------------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence 478999998851 35899999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh-----------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 005545 160 YNGRQFSS-----------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL 222 (691)
Q Consensus 160 ~~G~~~~~-----------------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 222 (691)
++|+++.. ..++.++|++|++.+++.+||.||+.++.... ......+..++++++++.+|+
T Consensus 59 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl 136 (252)
T TIGR03005 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGL 136 (252)
T ss_pred ECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCC
Confidence 99987631 24668999999999999999999998753211 122344455678899999999
Q ss_pred CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHH
Q 005545 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRL 301 (691)
Q Consensus 223 ~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i 301 (691)
.+..++.+ +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. ++
T Consensus 137 ~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~ 210 (252)
T TIGR03005 137 ADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FA 210 (252)
T ss_pred hhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HH
Confidence 87766554 579999999999999999999999999999999999999999999999874 899999999964 57
Q ss_pred HhcCCEEEEecCCeEEEecCHhHHH
Q 005545 302 YRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 302 ~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
.+++|++++|++|++++.|+.+++.
T Consensus 211 ~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 211 REFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 7899999999999999999988774
No 107
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.8e-42 Score=357.06 Aligned_cols=219 Identities=28% Similarity=0.442 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+. +.+|+|+||++++||+++|+|||||||||||++|+|.+ ++.+|+|
T Consensus 2 ~i~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i 59 (242)
T TIGR03411 2 ILYLEGLSVSFDG---------------------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT-RPDEGSV 59 (242)
T ss_pred eEEEEeeEEEcCC---------------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCeE
Confidence 4789999998851 35899999999999999999999999999999999977 4679999
Q ss_pred EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccc
Q 005545 159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP--K---KLTREEKIEQAEMVIMELGLTRCRNS 228 (691)
Q Consensus 159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~ 228 (691)
.++|.++.. ..++.++|++|++.+++.+||+||+.+....... . ....++..++++++++.+|+.+..++
T Consensus 60 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 139 (242)
T TIGR03411 60 LFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADR 139 (242)
T ss_pred EECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcC
Confidence 999988742 1245799999999999999999999886431100 0 01123345678899999999877776
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
.+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++
T Consensus 140 ~~-----~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i 212 (242)
T TIGR03411 140 LA-----GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKV 212 (242)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEE
Confidence 55 46999999999999999999999999999999999999999999999976 689999999964 578899999
Q ss_pred EEecCCeEEEecCHhHHH
Q 005545 309 VVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~ 326 (691)
++|++|++++.|+++++.
T Consensus 213 ~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 213 TVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred EEEECCeEEeeCCHHHHh
Confidence 999999999999988763
No 108
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=357.93 Aligned_cols=219 Identities=26% Similarity=0.420 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~ 154 (691)
.|+++||+++|.. +.+|+|+||++++||+++|+||||||||||+++|+|++.+ +.
T Consensus 3 ~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~ 61 (250)
T PRK14247 3 KIEIRDLKVSFGQ---------------------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61 (250)
T ss_pred eEEEEeeEEEECC---------------------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCC
Confidence 5899999998851 3589999999999999999999999999999999998743 36
Q ss_pred ceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cc
Q 005545 155 SGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR----CR 226 (691)
Q Consensus 155 ~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~ 226 (691)
+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.+....+. ......+..++++++++.+||.+ ..
T Consensus 62 ~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14247 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR-LVKSKKELQERVRWALEKAQLWDEVKDRL 140 (250)
T ss_pred ceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHcCCCcchhhhh
Confidence 9999999998742 346789999999988889999999988653221 11133445567889999999864 23
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
++. +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|++||++. .+.+.||
T Consensus 141 ~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d 213 (250)
T PRK14247 141 DAP-----AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISD 213 (250)
T ss_pred cCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcC
Confidence 443 357999999999999999999999999999999999999999999999965 799999999975 5778999
Q ss_pred EEEEecCCeEEEecCHhHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~ 326 (691)
++++|++|++++.|+++++.
T Consensus 214 ~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 214 YVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEEEECCeEEEECCHHHHH
Confidence 99999999999999998874
No 109
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-42 Score=360.18 Aligned_cols=213 Identities=29% Similarity=0.447 Sum_probs=184.0
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+++|.. +.+|+|+||+|++||+++|+||||||||||+++|+|++ ++++|+|
T Consensus 1 ml~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i 58 (255)
T PRK11248 1 MLQISHLYADYGG---------------------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-PYQHGSI 58 (255)
T ss_pred CEEEEEEEEEeCC---------------------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence 3789999998851 35899999999999999999999999999999999977 4779999
Q ss_pred EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCccc
Q 005545 159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI 238 (691)
Q Consensus 159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 238 (691)
.++|+++.. .++.++|++|++.+++.+||.||+.+....+ .....+..++++++++.+||.+..++.+ ..|
T Consensus 59 ~~~g~~~~~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 129 (255)
T PRK11248 59 TLDGKPVEG-PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQL 129 (255)
T ss_pred EECCEECCC-CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 999998753 3346899999999999999999998764322 2334445567889999999987776655 469
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEec--CCe
Q 005545 239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLS--EGS 315 (691)
Q Consensus 239 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~--~G~ 315 (691)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcE
Confidence 99999999999999999999999999999999999999999999965 5899999999965 5788999999998 599
Q ss_pred EEEecCHh
Q 005545 316 PIYSGRAA 323 (691)
Q Consensus 316 iv~~G~~~ 323 (691)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99887654
No 110
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.3e-43 Score=351.60 Aligned_cols=191 Identities=32% Similarity=0.476 Sum_probs=165.5
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-hccccEEEEccCCC-CCCCCCHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-SLKRKTGFVTQDDV-LYPHLTVLE 190 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-~~~~~igyv~Q~~~-l~~~lTV~E 190 (691)
+.+|+|+||++++||+++|+|||||||||||++|+|++ ++.+|+|.++|+++.. ..++.++|++|++. .+..+||+|
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-KESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 35899999999999999999999999999999999977 4789999999998753 34568999999974 334679999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545 191 TLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDS 270 (691)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~ 270 (691)
|+.+..... . . ..++++++++.+||.+..++.+ +.||||||||++|||+|+.+|++|+|||||+|||+
T Consensus 92 ~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 92 ELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred HHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 998754321 1 1 1246788999999988777665 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE
Q 005545 271 TTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI 317 (691)
Q Consensus 271 ~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv 317 (691)
.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999877999999999965 577899999999999975
No 111
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=360.99 Aligned_cols=217 Identities=32% Similarity=0.498 Sum_probs=186.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus 2 ~l~~~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~G~i 59 (258)
T PRK13548 2 MLEARNLSVRLGG---------------------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-SPDSGEV 59 (258)
T ss_pred eEEEEeEEEEeCC---------------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence 4889999999861 35899999999999999999999999999999999976 4779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
.++|.++.. ..++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+||.+..++.+
T Consensus 60 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (258)
T PRK13548 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY---- 132 (258)
T ss_pred EECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc----
Confidence 999988743 34567999999998888899999998754211 1122334456788999999987777765
Q ss_pred CcccCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCCchHHHhcCCE
Q 005545 235 FRGISGGERKRVSIGQEML------VNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.++||+
T Consensus 133 -~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 210 (258)
T PRK13548 133 -PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADR 210 (258)
T ss_pred -ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCE
Confidence 469999999999999999 5999999999999999999999999999998 57899999999964 57789999
Q ss_pred EEEecCCeEEEecCHhHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~ 326 (691)
+++|++|++++.|+++++.
T Consensus 211 i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 211 IVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEEECCEEEeeCCHHHHh
Confidence 9999999999999988764
No 112
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.1e-42 Score=351.57 Aligned_cols=207 Identities=32% Similarity=0.536 Sum_probs=178.9
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~---------------------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 58 (213)
T cd03262 1 IEIKNLHKSFGD---------------------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-EPDSGTII 58 (213)
T ss_pred CEEEEEEEEECC---------------------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence 468999998861 35899999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 160 YNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 160 ~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
++|+++.. ..++.++|++|++.+++.+|++||+.+..... .....++..++++++++.+|+.+..++.+
T Consensus 59 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 133 (213)
T cd03262 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYP--- 133 (213)
T ss_pred ECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCc---
Confidence 99998731 34678999999999999999999998764211 12234445567889999999987777665
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
+.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++
T Consensus 134 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~ 210 (213)
T cd03262 134 --AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD 210 (213)
T ss_pred --cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 469999999999999999999999999999999999999999999999887899999999964 57789999999999
Q ss_pred CeE
Q 005545 314 GSP 316 (691)
Q Consensus 314 G~i 316 (691)
|++
T Consensus 211 g~i 213 (213)
T cd03262 211 GRI 213 (213)
T ss_pred CcC
Confidence 974
No 113
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=371.60 Aligned_cols=224 Identities=22% Similarity=0.352 Sum_probs=189.1
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---CCc
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---KFS 155 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---~~~ 155 (691)
.|+++||++.|.... +...+|+||||+|++||++||+|+||||||||+++|+|++.+ +.+
T Consensus 3 ~L~v~~l~~~~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~ 65 (326)
T PRK11022 3 LLNVDKLSVHFGDES-----------------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMA 65 (326)
T ss_pred eEEEeCeEEEECCCC-----------------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcc
Confidence 589999999996321 124699999999999999999999999999999999998743 369
Q ss_pred eEEEECCEeCCh----hc----cccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 005545 156 GKITYNGRQFSS----SL----KRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR- 224 (691)
Q Consensus 156 G~I~~~G~~~~~----~~----~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~- 224 (691)
|+|.++|+++.. .. ++.++||+|++ .++|.+||.+++....... ....+++..+++.++++.+||.+
T Consensus 66 G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~ 143 (326)
T PRK11022 66 EKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDP 143 (326)
T ss_pred eEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCCh
Confidence 999999998742 11 24699999998 4889999999887654322 12345566778999999999974
Q ss_pred --cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHH
Q 005545 225 --CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRL 301 (691)
Q Consensus 225 --~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i 301 (691)
..+. .+.+|||||||||+|||||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||+. .+
T Consensus 144 ~~~l~~-----~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~ 217 (326)
T PRK11022 144 ASRLDV-----YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LV 217 (326)
T ss_pred HHHHhC-----CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence 2333 3467999999999999999999999999999999999999999999999987 5899999999964 57
Q ss_pred HhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 302 YRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 302 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
.+++|+|++|++|++++.|+++++.+
T Consensus 218 ~~~adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 218 AEAAHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHhh
Confidence 78999999999999999999998854
No 114
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=357.61 Aligned_cols=219 Identities=27% Similarity=0.421 Sum_probs=185.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~ 154 (691)
.|+++||+++|.. +.+|+|+||++++||+++|+||||||||||+++|+|++++ +.
T Consensus 4 ~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~ 62 (253)
T PRK14267 4 AIETVNLRVYYGS---------------------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62 (253)
T ss_pred eEEEEeEEEEeCC---------------------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCC
Confidence 5899999999851 3589999999999999999999999999999999998743 25
Q ss_pred ceEEEECCEeCC--h----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----
Q 005545 155 SGKITYNGRQFS--S----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR---- 224 (691)
Q Consensus 155 ~G~I~~~G~~~~--~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---- 224 (691)
+|+|.++|+++. . ..++.++|++|++.+++.+||.||+.++...+. .....++..++++++++.+||..
T Consensus 63 ~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~ 141 (253)
T PRK14267 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKD 141 (253)
T ss_pred ceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhh
Confidence 999999999874 1 345689999999999999999999987653221 11123444557888999999853
Q ss_pred cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM 304 (691)
Q Consensus 225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~ 304 (691)
..++. ++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++
T Consensus 142 ~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~ 214 (253)
T PRK14267 142 RLNDY-----PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARV 214 (253)
T ss_pred hhccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhh
Confidence 23333 357999999999999999999999999999999999999999999999976 699999999964 57789
Q ss_pred CCEEEEecCCeEEEecCHhHHH
Q 005545 305 FDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 305 ~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
||++++|++|++++.|+++++.
T Consensus 215 ~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 215 SDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988874
No 115
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.7e-42 Score=353.59 Aligned_cols=215 Identities=30% Similarity=0.477 Sum_probs=177.5
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|.... ....+|+|+|+++++||+++|+|||||||||||++|+|++ ++.+|+|.
T Consensus 2 l~~~~v~~~~~~~~-----------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 63 (228)
T cd03257 2 LEVKNLSVSFPTGG-----------------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-KPTSGSII 63 (228)
T ss_pred eEEEeeeEeccCCC-----------------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence 78999999986210 0125899999999999999999999999999999999977 57799999
Q ss_pred ECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccc
Q 005545 160 YNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-AEMVIMELGLT-RCRNS 228 (691)
Q Consensus 160 ~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~ 228 (691)
++|+++.. ..++.++|++|++ .+++.+||+||+.+......+ . ...+..+. ++++++.+++. +..++
T Consensus 64 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~ 141 (228)
T cd03257 64 FDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNR 141 (228)
T ss_pred ECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhC
Confidence 99998742 2456899999998 467789999999876433211 1 12222222 36889999995 45565
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~ 307 (691)
.+ ..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||+
T Consensus 142 ~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 215 (228)
T cd03257 142 YP-----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADR 215 (228)
T ss_pred Cc-----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 54 469999999999999999999999999999999999999999999999875 899999999974 57779999
Q ss_pred EEEecCCeEEEec
Q 005545 308 VVVLSEGSPIYSG 320 (691)
Q Consensus 308 v~~L~~G~iv~~G 320 (691)
+++|++|+++..|
T Consensus 216 i~~l~~G~i~~~g 228 (228)
T cd03257 216 VAVMYAGKIVEEG 228 (228)
T ss_pred EEEEeCCEEEecC
Confidence 9999999998765
No 116
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=361.14 Aligned_cols=226 Identities=28% Similarity=0.453 Sum_probs=192.7
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-C---CCc
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-G---KFS 155 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~---~~~ 155 (691)
|+++||+.+|....+ ...+++||||++++||++||+|.|||||||+.++|+|+++ + -.+
T Consensus 2 L~v~nL~v~f~~~~g-----------------~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~ 64 (316)
T COG0444 2 LEVKNLSVSFPTDAG-----------------VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVG 64 (316)
T ss_pred ceEeeeEEEEecCCc-----------------cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEee
Confidence 689999999985321 3469999999999999999999999999999999999885 2 257
Q ss_pred eEEEECCEeCCh----h---c-cccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHHcCCCc
Q 005545 156 GKITYNGRQFSS----S---L-KRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKL-TREEKIEQAEMVIMELGLTR 224 (691)
Q Consensus 156 G~I~~~G~~~~~----~---~-~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~ 224 (691)
|+|.++|+++.+ . + .+.|+|||||+. |.|.+||.+.+.-..... ... .+++..+++.++|+.+||++
T Consensus 65 G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--~~~~~~~ea~~~a~~~L~~Vgi~~ 142 (316)
T COG0444 65 GEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKERAIELLELVGIPD 142 (316)
T ss_pred eEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHcCCCC
Confidence 999999997632 1 2 247999999974 899999999887665432 222 46677889999999999986
Q ss_pred cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHh
Q 005545 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~ 303 (691)
... +-+.++.+|||||||||.||.||+.+|++||+||||++||...+.+|+++|+++++ .|.++|++|||.. .+.+
T Consensus 143 ~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~ 219 (316)
T COG0444 143 PER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAE 219 (316)
T ss_pred HHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence 421 22345678999999999999999999999999999999999999999999999997 6999999999964 6889
Q ss_pred cCCEEEEecCCeEEEecCHhHHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
+||||+||..|++|+.|+++++++
T Consensus 220 ~aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 220 IADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred hcceEEEEECcEEEEeCCHHHHhc
Confidence 999999999999999999998854
No 117
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.8e-42 Score=351.97 Aligned_cols=210 Identities=33% Similarity=0.503 Sum_probs=177.9
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+... +.+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 2 l~~~~v~~~~~~~~-----------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~ 63 (221)
T TIGR02211 2 LKCENLGKRYQEGK-----------------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NPTSGEVL 63 (221)
T ss_pred EEEEeeeEEccCCC-----------------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEE
Confidence 68899999986211 1245999999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh----h---cc-ccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545 160 YNGRQFSS----S---LK-RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231 (691)
Q Consensus 160 ~~G~~~~~----~---~~-~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 231 (691)
++|+++.. . .+ +.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.+
T Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 64 FNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred ECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-
Confidence 99998743 1 22 57999999999999999999998865332 1233344567889999999987777655
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEE
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+ +.+|++++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence 46999999999999999999999999999999999999999999999986 4899999999975 45 45899999
Q ss_pred ecCCeEE
Q 005545 311 LSEGSPI 317 (691)
Q Consensus 311 L~~G~iv 317 (691)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999975
No 118
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-42 Score=358.14 Aligned_cols=218 Identities=24% Similarity=0.398 Sum_probs=184.3
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----C
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----K 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~ 153 (691)
..|+++||+++|+. +.+|+|+||+|++||+++|+|+||||||||+|+|+|++++ +
T Consensus 6 ~~l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~ 64 (254)
T PRK14273 6 AIIETENLNLFYTD---------------------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64 (254)
T ss_pred ceEEEeeeEEEeCC---------------------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCC
Confidence 36999999999861 3489999999999999999999999999999999998753 2
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC----
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT---- 223 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---- 223 (691)
.+|+|.++|+++.. ..++.++|++|++.+++ +||+||+.+..... ......+..++++++++.+++.
T Consensus 65 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~ 141 (254)
T PRK14273 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIH--GTKDKKKLDEIVEQSLKKSALWNEVK 141 (254)
T ss_pred CceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhCCchhhH
Confidence 58999999988631 34668999999998885 89999998865332 1112334456788889999873
Q ss_pred ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~ 303 (691)
+..++.+ +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+
T Consensus 142 ~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~ 214 (254)
T PRK14273 142 DKLNTNA-----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGR 214 (254)
T ss_pred HHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHH
Confidence 3345443 57999999999999999999999999999999999999999999999965 799999999975 5778
Q ss_pred cCCEEEEecCCeEEEecCHhHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
++|++++|++|+++..|+++++.
T Consensus 215 ~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 215 ISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999998874
No 119
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-42 Score=357.72 Aligned_cols=224 Identities=25% Similarity=0.397 Sum_probs=185.3
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C-
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G- 152 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~- 152 (691)
.|..|+++||+++|.. +.+|+|+||++++||+++|+||||||||||||+|+|+.. +
T Consensus 3 ~~~~l~~~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~ 61 (253)
T PRK14242 3 SPPKMEARGLSFFYGD---------------------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPG 61 (253)
T ss_pred CCcEEEEeeeEEEECC---------------------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCC
Confidence 3567999999999851 348999999999999999999999999999999999753 2
Q ss_pred -CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545 153 -KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225 (691)
Q Consensus 153 -~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 225 (691)
+.+|+|.++|+++.. ..++.++|++|++.+++ .||+||+.+....+ .....++..++++++++.+||.+.
T Consensus 62 ~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~ 138 (253)
T PRK14242 62 ARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVN--GVKDKAYLAERVERSLRHAALWDE 138 (253)
T ss_pred CCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCchh
Confidence 479999999998742 24568999999998887 59999998865332 111233445678889999998542
Q ss_pred ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~ 305 (691)
..... +..++.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. ++.++|
T Consensus 139 ~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~ 215 (253)
T PRK14242 139 VKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVS 215 (253)
T ss_pred hhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhC
Confidence 21111 123457999999999999999999999999999999999999999999999965 799999999964 577899
Q ss_pred CEEEEecCCeEEEecCHhHHH
Q 005545 306 DKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 306 D~v~~L~~G~iv~~G~~~~~~ 326 (691)
|++++|++|++++.|+++++.
T Consensus 216 d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 216 DVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999988764
No 120
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-42 Score=362.73 Aligned_cols=219 Identities=28% Similarity=0.446 Sum_probs=188.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+. .+.+|+|+||++++||+++|+|+||||||||+|+|+|++ ++.+|+|
T Consensus 3 ~l~~~~l~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i 61 (277)
T PRK13652 3 LIETRDLCYSYSG--------------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-KPTSGSV 61 (277)
T ss_pred eEEEEEEEEEeCC--------------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEE
Confidence 4889999999952 124899999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|+++.. ..++.++|++|++. .+...||.||+.+..... ....++..++++++++.+||.+..++.+
T Consensus 62 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (277)
T PRK13652 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP--- 135 (277)
T ss_pred EECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc---
Confidence 999998742 34568999999974 333679999998765321 2344555567889999999987777765
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+
T Consensus 136 --~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~ 212 (277)
T PRK13652 136 --HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMD 212 (277)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999875 899999999964 5778999999999
Q ss_pred CCeEEEecCHhHHHH
Q 005545 313 EGSPIYSGRAAQVMD 327 (691)
Q Consensus 313 ~G~iv~~G~~~~~~~ 327 (691)
+|++++.|+++++.+
T Consensus 213 ~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 213 KGRIVAYGTVEEIFL 227 (277)
T ss_pred CCeEEEECCHHHHhc
Confidence 999999999998854
No 121
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=362.17 Aligned_cols=241 Identities=25% Similarity=0.380 Sum_probs=203.7
Q ss_pred ceEEEEEeEEEEEccCCCCC--cccccC-CCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 005545 77 PVTLKFEDVAYSINLHTSKG--SCFATS-HGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK 153 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~ 153 (691)
++.|+++||++-+....... ...++. +..-.++.+-..-++|+|++++.||+..|||-||||||||+|+|.++. .|
T Consensus 2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi-ep 80 (386)
T COG4175 2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-EP 80 (386)
T ss_pred CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC-CC
Confidence 35689999988876432110 000000 000112233345689999999999999999999999999999999876 57
Q ss_pred CceEEEECCEeCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545 154 FSGKITYNGRQFSS-------SL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225 (691)
Q Consensus 154 ~~G~I~~~G~~~~~-------~~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 225 (691)
++|+|+++|.++.+ ++ |+++++|||...|+|+.||.||..|+...+ +.+++++++++.++|+.+||+.+
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 89999999998853 23 468999999999999999999999998765 67899999999999999999999
Q ss_pred ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhc
Q 005545 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRM 304 (691)
Q Consensus 226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~ 304 (691)
.+.++ .+|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.+|+++ ++|||++|||. +++.++
T Consensus 158 ~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlri 231 (386)
T COG4175 158 ADKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRI 231 (386)
T ss_pred hhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhc
Confidence 88766 579999999999999999999999999999999999999999999999875 89999999996 568899
Q ss_pred CCEEEEecCCeEEEecCHhHHHH
Q 005545 305 FDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 305 ~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
.|||.+|++|+++..|+++|++.
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999999953
No 122
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-42 Score=361.08 Aligned_cols=218 Identities=31% Similarity=0.483 Sum_probs=187.3
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|.. .+.+|+|+||+|++||+++|+||||||||||+|+|+|++ ++.+|+|.
T Consensus 2 l~~~~l~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~ 60 (275)
T PRK13639 2 LETRDLKYSYPD--------------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KPTSGEVL 60 (275)
T ss_pred EEEEEEEEEeCC--------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEE
Confidence 789999999851 134899999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh------hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 160 YNGRQFSS------SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 160 ~~G~~~~~------~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
++|+++.. ..++.++|++|++. .+...||.||+.+..... ....++..+++.++++.+||.+..++.+
T Consensus 61 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-- 135 (275)
T PRK13639 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-- 135 (275)
T ss_pred ECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh--
Confidence 99998741 24568999999973 333579999998764321 2344555567889999999988777765
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|+
T Consensus 136 ---~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~ 211 (275)
T PRK13639 136 ---HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMS 211 (275)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999877999999999964 5778999999999
Q ss_pred CCeEEEecCHhHHHH
Q 005545 313 EGSPIYSGRAAQVMD 327 (691)
Q Consensus 313 ~G~iv~~G~~~~~~~ 327 (691)
+|++++.|+++++..
T Consensus 212 ~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 212 DGKIIKEGTPKEVFS 226 (275)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999998753
No 123
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-42 Score=378.32 Aligned_cols=239 Identities=24% Similarity=0.390 Sum_probs=196.9
Q ss_pred EEEEEeEEEEEccCCCCC-c-ccccC-CCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 79 TLKFEDVAYSINLHTSKG-S-CFATS-HGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
.|+++||++.|....... . ..... ...-.+.++...+|+|+||+|++||+++|+||||||||||||+|+|++ .+.+
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-~p~s 82 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-EPTR 82 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCC
Confidence 589999999987532110 0 00000 001123445556899999999999999999999999999999999987 4779
Q ss_pred eEEEECCEeCCh----h----ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 156 GKITYNGRQFSS----S----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 156 G~I~~~G~~~~~----~----~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
|+|+++|+++.. . .++.++||+|++.+++++||+||+.+....+ ....++..++++++++.+||.+..+
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAH 159 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 999999998752 1 1357999999999999999999999876432 2344555667889999999988777
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCC
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D 306 (691)
+.+ +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+++|
T Consensus 160 ~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~D 233 (400)
T PRK10070 160 SYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGD 233 (400)
T ss_pred cCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCC
Confidence 665 47999999999999999999999999999999999999999999999986 5899999999964 5788999
Q ss_pred EEEEecCCeEEEecCHhHHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~ 327 (691)
++++|++|++++.|+++++..
T Consensus 234 ri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 234 RIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred EEEEEECCEEEecCCHHHHHh
Confidence 999999999999999988743
No 124
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.2e-42 Score=378.62 Aligned_cols=237 Identities=22% Similarity=0.365 Sum_probs=196.7
Q ss_pred EEEEeEEEEEccCCCCC-c-ccccC-CCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 80 LKFEDVAYSINLHTSKG-S-CFATS-HGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
|+++||.+-+..+.... . ...+. .....++++...+|+|+||+|++||+++|+|+||||||||+|+|+|++ ++.+|
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~p~~G 79 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-PVSRG 79 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCc
Confidence 57899988886432211 0 00010 011235677788999999999999999999999999999999999987 47799
Q ss_pred EEEECCE----eCCh----h---c-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005545 157 KITYNGR----QFSS----S---L-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224 (691)
Q Consensus 157 ~I~~~G~----~~~~----~---~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 224 (691)
+|+++|+ ++.. . . ++.++||+|++.+++.+||+||+.++...+ ..++++..++++++++.+||.+
T Consensus 80 ~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 80 SVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQ 156 (382)
T ss_pred EEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCch
Confidence 9999996 3321 1 2 257999999999999999999999876432 2345666678899999999988
Q ss_pred cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHh
Q 005545 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYR 303 (691)
Q Consensus 225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~ 303 (691)
..++.++ .|||||||||+|||||+.+|+||||||||+|||+.++.++.+.|++++++ |+|||++|||+. ++.+
T Consensus 157 ~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~ 230 (382)
T TIGR03415 157 WADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALK 230 (382)
T ss_pred hhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence 8777664 69999999999999999999999999999999999999999999999875 999999999964 6789
Q ss_pred cCCEEEEecCCeEEEecCHhHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
++|++++|++|+++..|+++++.
T Consensus 231 l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 231 IGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred hCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999998885
No 125
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-42 Score=361.58 Aligned_cols=222 Identities=25% Similarity=0.406 Sum_probs=186.2
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+... ...+.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus 2 ~l~~~~l~~~~~~~~----------------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~p~~G~i 64 (280)
T PRK13649 2 GINLQNVSYTYQAGT----------------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-VPTQGSV 64 (280)
T ss_pred eEEEEEEEEEcCCCC----------------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence 488999999996211 00135899999999999999999999999999999999977 4679999
Q ss_pred EECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccc
Q 005545 159 TYNGRQFSS--------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRN 227 (691)
Q Consensus 159 ~~~G~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~ 227 (691)
.++|+++.. ..++.++|++|++ .+++ .||+||+.+..... ....++..++++++++.+||.+ ..+
T Consensus 65 ~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~ 140 (280)
T PRK13649 65 RVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFE 140 (280)
T ss_pred EECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 999998742 2456799999996 4554 69999998764322 2234445567889999999973 455
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.+ +.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus 141 ~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~ 214 (280)
T PRK13649 141 KNP-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADF 214 (280)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCE
Confidence 544 469999999999999999999999999999999999999999999999877899999999964 57789999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++.+
T Consensus 215 i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 215 VYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred EEEEECCEEEEeCCHHHHhc
Confidence 99999999999999988743
No 126
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-42 Score=350.59 Aligned_cols=193 Identities=35% Similarity=0.563 Sum_probs=166.8
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCC-CCCCCC
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDV-LYPHLT 187 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lT 187 (691)
+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.++|+++.. ..++.++|++|++. .++.+|
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 35999999999999999999999999999999999977 4679999999988742 34568999999975 366789
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545 188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG 267 (691)
Q Consensus 188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg 267 (691)
|+||+.+..... .....+..++++++++.+||.+..++.+ +.|||||||||+|||||+.+|++|+|||||+|
T Consensus 93 ~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~ 164 (211)
T cd03225 93 VEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164 (211)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998764322 2233444567889999999987766655 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 268 LDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 268 LD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 165 LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 165 LDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999877999999999964 5778899999999885
No 127
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-43 Score=396.29 Aligned_cols=218 Identities=34% Similarity=0.551 Sum_probs=189.1
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+|+||+|.|+... ...||+|+||+|+|||++||+||||+||||+.++|-.++ .|.+|+|
T Consensus 465 ~IeF~~VsFaYP~Rp------------------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY-~PtsG~I 525 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP------------------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY-DPTSGRI 525 (716)
T ss_pred eEEEEEeeeecCCCC------------------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeE
Confidence 699999999999532 357999999999999999999999999999999999765 6889999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCcccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-----AEMVIMELGLTRCRNSV 229 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ 229 (691)
.+||+|+.+ .+|++||+|.|||.||. -||+|||.|+.. ..+.++..+. +.+.+. ++++..||.
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~ 597 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTV 597 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccc
Confidence 999999964 47899999999999996 499999999753 3344443322 233444 568889999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
||+ ....||||||||++|||||++||.||||||.||+||+.+...+-+.|.++.+ ++|||++.|..+. .+.+|+|+
T Consensus 598 VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Iv 673 (716)
T KOG0058|consen 598 VGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIV 673 (716)
T ss_pred cCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEE
Confidence 996 3346999999999999999999999999999999999999999999999876 5999999999753 58999999
Q ss_pred EecCCeEEEecCHhHHHH
Q 005545 310 VLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~~~~ 327 (691)
++++|++++.|.++|+++
T Consensus 674 vi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 674 VIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEcCCeEEecccHHHHhh
Confidence 999999999999999975
No 128
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=359.02 Aligned_cols=220 Identities=27% Similarity=0.417 Sum_probs=187.3
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+++|+. +.+|+|+||++++||+++|+|+||||||||+++|+|++ ++.+|+|
T Consensus 2 ~l~~~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i 59 (255)
T PRK11231 2 TLRTENLTVGYGT---------------------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-TPQSGTV 59 (255)
T ss_pred EEEEEeEEEEECC---------------------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCcEE
Confidence 5889999998861 35999999999999999999999999999999999976 4679999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|+++.. ..++.++|++|++.+++.+|+.||+.++...... ......+..++++++++.+||.+..++.+
T Consensus 60 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 136 (255)
T PRK11231 60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL--- 136 (255)
T ss_pred EECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---
Confidence 999988642 3456799999999988889999999875311000 01112233456788999999987777665
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
+.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++
T Consensus 137 --~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~ 213 (255)
T PRK11231 137 --TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN 213 (255)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999877999999999965 57899999999999
Q ss_pred CeEEEecCHhHHH
Q 005545 314 GSPIYSGRAAQVM 326 (691)
Q Consensus 314 G~iv~~G~~~~~~ 326 (691)
|++++.|+.+++.
T Consensus 214 G~i~~~~~~~~~~ 226 (255)
T PRK11231 214 GHVMAQGTPEEVM 226 (255)
T ss_pred CeEEEEcCHHHhc
Confidence 9999999887763
No 129
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=359.31 Aligned_cols=208 Identities=26% Similarity=0.380 Sum_probs=181.8
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|.. +.+|+|+||+|++||+++|+||||||||||+|+|+|++ ++.+|+
T Consensus 11 ~~l~i~~l~~~~~~---------------------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-~p~~G~ 68 (257)
T PRK11247 11 TPLLLNAVSKRYGE---------------------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-TPSAGE 68 (257)
T ss_pred CcEEEEEEEEEECC---------------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeE
Confidence 45999999999861 35899999999999999999999999999999999977 467999
Q ss_pred EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
|.++|.++. ..++.++|++|++.+++.+||+||+.+... . ...++++++++.+||.+..+..+ ..
T Consensus 69 i~~~g~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~ 133 (257)
T PRK11247 69 LLAGTAPLA-EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AA 133 (257)
T ss_pred EEECCEEHH-HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 999998764 356789999999999998999999987421 1 12346788999999987776655 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||++++|++|++
T Consensus 134 LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i 212 (257)
T PRK11247 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKI 212 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 5899999999964 57789999999999999
Q ss_pred EEecCHh
Q 005545 317 IYSGRAA 323 (691)
Q Consensus 317 v~~G~~~ 323 (691)
++.|+.+
T Consensus 213 ~~~~~~~ 219 (257)
T PRK11247 213 GLDLTVD 219 (257)
T ss_pred Eeecccc
Confidence 9887653
No 130
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-42 Score=361.53 Aligned_cols=222 Identities=27% Similarity=0.451 Sum_probs=189.7
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
+..+|+++|++++|+.. ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+
T Consensus 4 ~~~~l~~~nl~~~~~~~-------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~ 63 (271)
T PRK13632 4 KSVMIKVENVSFSYPNS-------------------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL-KPQS 63 (271)
T ss_pred cceEEEEEeEEEEcCCC-------------------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCC
Confidence 34579999999998521 135899999999999999999999999999999999977 4679
Q ss_pred eEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545 156 GKITYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230 (691)
Q Consensus 156 G~I~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 230 (691)
|+|.++|+++.. .+++.++|++|++. .++.+||+||+.+..... ....++..++++++++.+||.+..++.+
T Consensus 64 G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 140 (271)
T PRK13632 64 GEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP 140 (271)
T ss_pred ceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc
Confidence 999999998753 35678999999974 677799999998764321 2234445567889999999987777765
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEE
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||++||++.. + ..||+++
T Consensus 141 -----~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~ 213 (271)
T PRK13632 141 -----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVI 213 (271)
T ss_pred -----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEE
Confidence 479999999999999999999999999999999999999999999999876 5999999999754 5 4799999
Q ss_pred EecCCeEEEecCHhHHHH
Q 005545 310 VLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~~~~ 327 (691)
+|++|++++.|+.+++.+
T Consensus 214 ~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 214 VFSEGKLIAQGKPKEILN 231 (271)
T ss_pred EEECCEEEEecCHHHHhc
Confidence 999999999999887643
No 131
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=361.04 Aligned_cols=221 Identities=29% Similarity=0.401 Sum_probs=187.7
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+
T Consensus 10 ~~l~i~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~ 67 (265)
T PRK10575 10 TTFALRNVSFRVPG---------------------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ-PPSEGE 67 (265)
T ss_pred ceEEEeeEEEEECC---------------------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCE
Confidence 46999999999851 35999999999999999999999999999999999976 477999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
|.++|+++.. ..++.++|++|++.+++.+||.||+.+........ ........++++++++.++|.+..++.++
T Consensus 68 i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 146 (265)
T PRK10575 68 ILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD- 146 (265)
T ss_pred EEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-
Confidence 9999988742 34568999999988888999999998753211000 01112334568899999999877776654
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|
T Consensus 147 ----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l 221 (265)
T PRK10575 147 ----SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVAL 221 (265)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 69999999999999999999999999999999999999999999999864 899999999964 577899999999
Q ss_pred cCCeEEEecCHhHHH
Q 005545 312 SEGSPIYSGRAAQVM 326 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~ 326 (691)
++|++++.|+.+++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 222 RGGEMIAQGTPAELM 236 (265)
T ss_pred ECCeEEEecCHHHhc
Confidence 999999999987763
No 132
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-42 Score=369.43 Aligned_cols=229 Identities=20% Similarity=0.277 Sum_probs=186.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---CCc
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---KFS 155 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---~~~ 155 (691)
.|+++||+++|+... +...+|+||||+|++||+++|+|+||||||||+++|+|++.+ +.+
T Consensus 3 ~L~v~~l~~~y~~~~-----------------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~ 65 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-----------------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTA 65 (330)
T ss_pred eEEEeeeEEEEeCCC-----------------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcc
Confidence 589999999996321 124599999999999999999999999999999999998742 468
Q ss_pred eEEEECCEeCCh----h----ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCC---CCHHHHHHHHHHHHHHcCC
Q 005545 156 GKITYNGRQFSS----S----LKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKK---LTREEKIEQAEMVIMELGL 222 (691)
Q Consensus 156 G~I~~~G~~~~~----~----~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL 222 (691)
|+|.++|+++.. . .++.++||+|++. +.|.+||.+++.+......... ....+..+++.++++.+||
T Consensus 66 G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL 145 (330)
T PRK15093 66 DRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGI 145 (330)
T ss_pred eEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCC
Confidence 999999998742 1 1347999999985 6888999999976432110000 1123445678899999999
Q ss_pred CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHH
Q 005545 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRL 301 (691)
Q Consensus 223 ~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i 301 (691)
.+..+ ..+..+.+|||||||||+||+||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||+ ..+
T Consensus 146 ~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v 222 (330)
T PRK15093 146 KDHKD--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QML 222 (330)
T ss_pred CChHH--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHH
Confidence 75321 012234679999999999999999999999999999999999999999999999874 99999999996 467
Q ss_pred HhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 302 YRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 302 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
.++||++++|++|++++.|+.+++..
T Consensus 223 ~~~~dri~vm~~G~ive~g~~~~i~~ 248 (330)
T PRK15093 223 SQWADKINVLYCGQTVETAPSKELVT 248 (330)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 78999999999999999999988753
No 133
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.8e-42 Score=359.66 Aligned_cols=228 Identities=25% Similarity=0.388 Sum_probs=188.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+.... .+..+.+.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus 2 ~l~~~~l~~~~~~~~~------------~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i 68 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGL------------FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-KPAQGTV 68 (265)
T ss_pred eEEEEeEEEEeccCcc------------ccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence 4889999999963110 00111346999999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 005545 159 TYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNS 228 (691)
Q Consensus 159 ~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 228 (691)
.++|+++.. ..++.++|++|++ .+++.+||+||+.+..... ......+..++++++++.+||. ...+.
T Consensus 69 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 69 SFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred EECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 999998742 1356799999997 4677899999998754321 1223334456788999999996 55565
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~ 307 (691)
.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|+
T Consensus 147 ~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 220 (265)
T TIGR02769 147 LP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQR 220 (265)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcE
Confidence 54 479999999999999999999999999999999999999999999999875 899999999964 57789999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++..
T Consensus 221 i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred EEEEeCCEEEEECCHHHHcC
Confidence 99999999999999988753
No 134
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-42 Score=358.52 Aligned_cols=221 Identities=23% Similarity=0.374 Sum_probs=189.0
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
++..|+++|++++|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+
T Consensus 4 ~~~~l~i~~l~~~~~~~-------------------~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-~~~~ 63 (269)
T PRK13648 4 KNSIIVFKNVSFQYQSD-------------------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE-KVKS 63 (269)
T ss_pred CCceEEEEEEEEEcCCC-------------------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 34579999999998621 134899999999999999999999999999999999977 4679
Q ss_pred eEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545 156 GKITYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230 (691)
Q Consensus 156 G~I~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 230 (691)
|+|.++|+++.. ..++.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..++.+
T Consensus 64 G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 140 (269)
T PRK13648 64 GEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP 140 (269)
T ss_pred eEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc
Confidence 999999998743 35678999999974 677889999998764321 2234445567889999999987777655
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEE
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
+.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++. .+|+++
T Consensus 141 -----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~ 213 (269)
T PRK13648 141 -----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVI 213 (269)
T ss_pred -----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEE
Confidence 479999999999999999999999999999999999999999999999864 899999999975 455 499999
Q ss_pred EecCCeEEEecCHhHHH
Q 005545 310 VLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~~~ 326 (691)
+|++|++++.|+++++.
T Consensus 214 ~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 214 VMNKGTVYKEGTPTEIF 230 (269)
T ss_pred EEECCEEEEecCHHHHh
Confidence 99999999999998874
No 135
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.8e-42 Score=356.19 Aligned_cols=230 Identities=27% Similarity=0.411 Sum_probs=186.6
Q ss_pred EEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEE
Q 005545 81 KFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITY 160 (691)
Q Consensus 81 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~ 160 (691)
+.+|+++.|.......+..+...+...++++.+.+|+|+||++++||+++|+||||||||||+++|+|++ ++++|+|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~ 80 (236)
T cd03267 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-QPTSGEVRV 80 (236)
T ss_pred ceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEE
Confidence 4678888887532111111111111235566778999999999999999999999999999999999977 477999999
Q ss_pred CCEeCCh---hccccEEEEc-cCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 161 NGRQFSS---SLKRKTGFVT-QDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 161 ~G~~~~~---~~~~~igyv~-Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
+|++... ..++.++|++ |++.+++.+||+|++.+....+ ....++..++++++++.+||.+..++.+.
T Consensus 81 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 152 (236)
T cd03267 81 AGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR----- 152 (236)
T ss_pred CCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----
Confidence 9987532 3456899998 5567888999999998765432 22344455677889999999888887664
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+
T Consensus 153 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~ 231 (236)
T cd03267 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGR 231 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999999864 899999999974 5788999999999999
Q ss_pred EEEec
Q 005545 316 PIYSG 320 (691)
Q Consensus 316 iv~~G 320 (691)
+++.|
T Consensus 232 i~~~g 236 (236)
T cd03267 232 LLYDG 236 (236)
T ss_pred EEecC
Confidence 98765
No 136
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.1e-42 Score=351.83 Aligned_cols=199 Identities=31% Similarity=0.506 Sum_probs=167.0
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCC--CCCCHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLY--PHLTVLE 190 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~--~~lTV~E 190 (691)
+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++++|+|.++|+++. ..++.++|++|++.++ ..+||+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~e 89 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL-KPTSGSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPISVRD 89 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCccHH-HHHhheEEeccccccccCCCCcHHH
Confidence 35899999999999999999999999999999999977 467999999998764 3567899999998763 3489999
Q ss_pred HHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545 191 TLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269 (691)
Q Consensus 191 ~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD 269 (691)
|+.+....... .....++..++++++++.+||.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 164 (213)
T cd03235 90 VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164 (213)
T ss_pred HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 99875432110 00112334457889999999987777655 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEec
Q 005545 270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320 (691)
Q Consensus 270 ~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G 320 (691)
+.++..+.+.|++++++|+|||++||++. ++.++||++++|++| +++.|
T Consensus 165 ~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 165 PKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999878899999999964 577899999999876 66654
No 137
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-42 Score=361.24 Aligned_cols=221 Identities=28% Similarity=0.435 Sum_probs=189.7
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc-
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS- 155 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~- 155 (691)
...|+++||++.|+.. .+.+|+|+|++|++||+++|+||||||||||+++|+|++. +.+
T Consensus 3 ~~~l~i~~l~~~~~~~-------------------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g 62 (282)
T PRK13640 3 DNIVEFKHVSFTYPDS-------------------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDN 62 (282)
T ss_pred CceEEEEEEEEEcCCC-------------------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCC
Confidence 3469999999998621 1348999999999999999999999999999999999874 445
Q ss_pred --eEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545 156 --GKITYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228 (691)
Q Consensus 156 --G~I~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 228 (691)
|+|.++|+++.. ..++.+||++|++. .++..||.||+.|..... ..+.++..++++++++.+||.+..++
T Consensus 63 ~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 139 (282)
T PRK13640 63 PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS 139 (282)
T ss_pred CCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC
Confidence 999999998853 34568999999974 667799999998764322 23455666788999999999877776
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~ 307 (691)
.+ +.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||+
T Consensus 140 ~~-----~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~ 212 (282)
T PRK13640 140 EP-----ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQ 212 (282)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 55 579999999999999999999999999999999999999999999999874 8999999999754 5 57999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++..
T Consensus 213 i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 213 VLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred EEEEECCEEEEeCCHHHHhc
Confidence 99999999999999988754
No 138
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=359.24 Aligned_cols=222 Identities=24% Similarity=0.394 Sum_probs=188.6
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
..+|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|
T Consensus 5 ~~~l~i~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G 62 (265)
T PRK10253 5 VARLRGEQLTLGYGK---------------------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM-TPAHG 62 (265)
T ss_pred ccEEEEEEEEEEECC---------------------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCc
Confidence 357999999999961 35899999999999999999999999999999999977 46799
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545 157 KITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCRNSVVG 231 (691)
Q Consensus 157 ~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 231 (691)
+|.++|+++.. ..++.++|++|++.+++.+||+||+.+......+. ....+...++++++++.+||.+..++.+
T Consensus 63 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 141 (265)
T PRK10253 63 HVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV- 141 (265)
T ss_pred EEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-
Confidence 99999998743 34567999999999998999999998752111000 0011233456889999999987767655
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEE
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||++++
T Consensus 142 ----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~ 216 (265)
T PRK10253 142 ----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIA 216 (265)
T ss_pred ----ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 579999999999999999999999999999999999999999999999874 899999999964 58899999999
Q ss_pred ecCCeEEEecCHhHHH
Q 005545 311 LSEGSPIYSGRAAQVM 326 (691)
Q Consensus 311 L~~G~iv~~G~~~~~~ 326 (691)
|++|++++.|+++++.
T Consensus 217 l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 217 LREGKIVAQGAPKEIV 232 (265)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
No 139
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4e-42 Score=351.73 Aligned_cols=212 Identities=26% Similarity=0.387 Sum_probs=180.5
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||++.|+. +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 58 (230)
T TIGR03410 1 LEVSNLNVYYGQ---------------------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL-PVKSGSIR 58 (230)
T ss_pred CEEEeEEEEeCC---------------------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEE
Confidence 468999998861 35999999999999999999999999999999999977 47799999
Q ss_pred ECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCC
Q 005545 160 YNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-LTRCRNSVVGGP 233 (691)
Q Consensus 160 ~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~ 233 (691)
++|.++.. ..++.++|++|++.+++.+|+.||+.++...+ ... ..+.++++++.++ +.+..++.+
T Consensus 59 ~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~--- 129 (230)
T TIGR03410 59 LDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRG--- 129 (230)
T ss_pred ECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCCh---
Confidence 99998742 13467999999999999999999998765432 111 1234566777776 555555554
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|+
T Consensus 130 --~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~ 206 (230)
T TIGR03410 130 --GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME 206 (230)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 569999999999999999999999999999999999999999999999874 899999999964 5778999999999
Q ss_pred CCeEEEecCHhHH
Q 005545 313 EGSPIYSGRAAQV 325 (691)
Q Consensus 313 ~G~iv~~G~~~~~ 325 (691)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
No 140
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-42 Score=355.45 Aligned_cols=219 Identities=21% Similarity=0.374 Sum_probs=185.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~ 154 (691)
.|+++||+++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+..+ ++
T Consensus 4 ~l~i~~v~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~ 62 (258)
T PRK14241 4 RIDVKDLNIYYGS---------------------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARV 62 (258)
T ss_pred cEEEeeEEEEECC---------------------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCc
Confidence 5899999999861 3589999999999999999999999999999999997743 26
Q ss_pred ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC----c
Q 005545 155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT----R 224 (691)
Q Consensus 155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~ 224 (691)
+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.+....+ .....++..++++++++.+||. +
T Consensus 63 ~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 140 (258)
T PRK14241 63 EGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLN--GVRNKKDLDELVEKSLRGANLWNEVKD 140 (258)
T ss_pred ceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhh
Confidence 9999999988731 34568999999999999999999998765432 1113344556788899999984 2
Q ss_pred cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM 304 (691)
Q Consensus 225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~ 304 (691)
..++. ++.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++
T Consensus 141 ~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~ 213 (258)
T PRK14241 141 RLDKP-----GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARV 213 (258)
T ss_pred HhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHh
Confidence 33433 357999999999999999999999999999999999999999999999965 689999999964 57789
Q ss_pred CCEEEEec------CCeEEEecCHhHHHH
Q 005545 305 FDKVVVLS------EGSPIYSGRAAQVMD 327 (691)
Q Consensus 305 ~D~v~~L~------~G~iv~~G~~~~~~~ 327 (691)
||++++|+ +|++++.|+++++..
T Consensus 214 ~d~i~~l~~~~~~~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 214 SDQTAFFNLEATGKPGRLVEIDDTEKIFS 242 (258)
T ss_pred CCEEEEEecccCCCCceEEecCCHHHHHh
Confidence 99999997 799999999988743
No 141
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=7.4e-42 Score=349.29 Aligned_cols=214 Identities=32% Similarity=0.477 Sum_probs=181.4
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|+... ..+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+
T Consensus 5 ~~l~~~~l~~~~~~~~-----------------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-~p~~G~ 66 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE-----------------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGE 66 (228)
T ss_pred ceEEEeeeEEEccCCC-----------------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCee
Confidence 4699999999986210 0124899999999999999999999999999999999976 577999
Q ss_pred EEECCEeCCh----h---c-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 005545 158 ITYNGRQFSS----S---L-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229 (691)
Q Consensus 158 I~~~G~~~~~----~---~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 229 (691)
|.++|+++.. . . ++.++|++|++.+++.+||.||+.+....+ .....+..++++++++.++|.+..++.
T Consensus 67 i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~ 143 (228)
T PRK10584 67 VSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL 143 (228)
T ss_pred EEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC
Confidence 9999998743 1 1 257999999999999999999998765332 223444566789999999998777766
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v 308 (691)
+ ..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+ +.+|++
T Consensus 144 ~-----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i 216 (228)
T PRK10584 144 P-----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRR 216 (228)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEE
Confidence 5 469999999999999999999999999999999999999999999999764 899999999975 45 559999
Q ss_pred EEecCCeEEEe
Q 005545 309 VVLSEGSPIYS 319 (691)
Q Consensus 309 ~~L~~G~iv~~ 319 (691)
++|++|++++.
T Consensus 217 ~~l~~g~i~~~ 227 (228)
T PRK10584 217 LRLVNGQLQEE 227 (228)
T ss_pred EEEECCEEEec
Confidence 99999998753
No 142
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=5.9e-42 Score=357.56 Aligned_cols=220 Identities=31% Similarity=0.515 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--Cce
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK--FSG 156 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~--~~G 156 (691)
.|+++||+++|.. +.+|+|+||++++||+++|+||||||||||+++|+|.+.+. .+|
T Consensus 4 ~l~~~nl~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G 62 (262)
T PRK09984 4 IIRVEKLAKTFNQ---------------------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGS 62 (262)
T ss_pred EEEEeeEEEEeCC---------------------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCce
Confidence 6899999999851 35899999999999999999999999999999999977432 369
Q ss_pred EEEECCEeCCh---------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHHcCC
Q 005545 157 KITYNGRQFSS---------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-----KLTREEKIEQAEMVIMELGL 222 (691)
Q Consensus 157 ~I~~~G~~~~~---------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL 222 (691)
+|.++|+++.. ..++.++|++|++.+++.+||+||+.+......+. ....++.+++++++++.+||
T Consensus 63 ~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 142 (262)
T PRK09984 63 HIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGM 142 (262)
T ss_pred EEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCC
Confidence 99999988632 23567999999999999999999998754211000 01123345678899999999
Q ss_pred CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHH
Q 005545 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRL 301 (691)
Q Consensus 223 ~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i 301 (691)
.+..++.+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+
T Consensus 143 ~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~ 216 (262)
T PRK09984 143 VHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YA 216 (262)
T ss_pred HHHHhCCc-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence 87777665 46999999999999999999999999999999999999999999999986 4899999999964 57
Q ss_pred HhcCCEEEEecCCeEEEecCHhHH
Q 005545 302 YRMFDKVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 302 ~~~~D~v~~L~~G~iv~~G~~~~~ 325 (691)
.++||++++|++|++++.|+++++
T Consensus 217 ~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 217 LRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHh
Confidence 889999999999999999998764
No 143
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=356.42 Aligned_cols=224 Identities=23% Similarity=0.385 Sum_probs=185.6
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---- 152 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---- 152 (691)
...|+++||+++|.. +.+|+|+|++|++||+++|+||||||||||+++|+|+..+
T Consensus 17 ~~~l~~~nl~~~~~~---------------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~ 75 (267)
T PRK14235 17 EIKMRARDVSVFYGE---------------------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGC 75 (267)
T ss_pred CceEEEEeEEEEECC---------------------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC
Confidence 347999999999861 3599999999999999999999999999999999997743
Q ss_pred CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005545 153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226 (691)
Q Consensus 153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 226 (691)
+.+|+|+++|+++.. ..++.++|++|++.+++. ||.||+.+....+. ......+..++++++++.+||.+..
T Consensus 76 ~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~ 153 (267)
T PRK14235 76 RVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEV 153 (267)
T ss_pred CCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhh
Confidence 479999999998742 245689999999988875 99999988654321 1112334456788899999996421
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
.... +..++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||
T Consensus 154 ~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d 230 (267)
T PRK14235 154 KDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQ 230 (267)
T ss_pred hHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCC
Confidence 1111 123357999999999999999999999999999999999999999999999976 689999999964 5778999
Q ss_pred EEEEecCCeEEEecCHhHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~ 326 (691)
++++|++|++++.|+++++.
T Consensus 231 ~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 231 RTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988774
No 144
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=5.3e-42 Score=356.72 Aligned_cols=219 Identities=30% Similarity=0.444 Sum_probs=185.8
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 2 l~~~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~ 59 (256)
T TIGR03873 2 LRLSRVSWSAGG---------------------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL-RPDAGTVD 59 (256)
T ss_pred ceEEeEEEEECC---------------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEE
Confidence 678999998861 35999999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+....... ......+..+++.++++.+++.+..++.+
T Consensus 60 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 135 (256)
T TIGR03873 60 LAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM---- 135 (256)
T ss_pred ECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 99998743 3356799999998888889999999875311000 00111233457889999999987777665
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|
T Consensus 136 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 136 -STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGG 213 (256)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 469999999999999999999999999999999999999999999999877899999999975 577899999999999
Q ss_pred eEEEecCHhHHH
Q 005545 315 SPIYSGRAAQVM 326 (691)
Q Consensus 315 ~iv~~G~~~~~~ 326 (691)
++++.|+.+++.
T Consensus 214 ~i~~~g~~~~~~ 225 (256)
T TIGR03873 214 RVVAAGPPREVL 225 (256)
T ss_pred CEEEecCHHHhh
Confidence 999999988763
No 145
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=352.97 Aligned_cols=223 Identities=23% Similarity=0.381 Sum_probs=184.0
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC--CCC--
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL--RGK-- 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~--~~~-- 153 (691)
+.|+++|+++.|.. +.+|+|+||++++||+++|+||||||||||+++|+|+. .++
T Consensus 2 ~~l~~~~~~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~ 60 (250)
T PRK14245 2 VKIDARDVNFWYGD---------------------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60 (250)
T ss_pred cEEEEEEEEEEECC---------------------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCC
Confidence 47899999998851 35899999999999999999999999999999999962 233
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
.+|+|.++|+++.. ..++.++|++|++.+++ .|+.||+.+....+ .....+...++++++++.+||.+...
T Consensus 61 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 137 (250)
T PRK14245 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVN--GVKDNAFIRQRVEETLKGAALWDEVK 137 (250)
T ss_pred CceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHcCCCcchh
Confidence 48999999998742 34568999999998887 69999998765432 11122334456788999999864321
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
.... ..++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||+
T Consensus 138 ~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~ 214 (250)
T PRK14245 138 DKLK-ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQ-QAARVSDK 214 (250)
T ss_pred hhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhCCE
Confidence 1111 23457999999999999999999999999999999999999999999999964 799999999965 57789999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++.+
T Consensus 215 v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 215 TAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred EEEEECCEEEEECCHHHHhc
Confidence 99999999999999998853
No 146
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-42 Score=360.26 Aligned_cols=222 Identities=26% Similarity=0.445 Sum_probs=188.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+++|+...+ ...+.+|+|+||+|++||+++|+|+||||||||+++|+|++ ++.+|+|
T Consensus 4 ~l~~~~l~~~~~~~~~---------------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i 67 (280)
T PRK13633 4 MIKCKNVSYKYESNEE---------------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL-IPSEGKV 67 (280)
T ss_pred eEEEeeeEEEcCCCCC---------------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceE
Confidence 5899999999963210 01245999999999999999999999999999999999987 4779999
Q ss_pred EECCEeCCh-----hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545 159 TYNGRQFSS-----SLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231 (691)
Q Consensus 159 ~~~G~~~~~-----~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 231 (691)
.++|+++.. ..++.+||++|++. ++ ..||.|++.|..... .....+..++++++++.+||.+..++.+
T Consensus 68 ~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~- 142 (280)
T PRK13633 68 YVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP- 142 (280)
T ss_pred EECCEeccccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-
Confidence 999998742 34678999999974 44 469999998865322 2344555667899999999988777766
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEE
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
+.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++.. +. .||++++
T Consensus 143 ----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~ 216 (280)
T PRK13633 143 ----HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIV 216 (280)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEE
Confidence 46999999999999999999999999999999999999999999999986 49999999999764 54 4999999
Q ss_pred ecCCeEEEecCHhHHHH
Q 005545 311 LSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 311 L~~G~iv~~G~~~~~~~ 327 (691)
|++|++++.|+++++..
T Consensus 217 l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 217 MDSGKVVMEGTPKEIFK 233 (280)
T ss_pred EECCEEEEecCHHHHhc
Confidence 99999999999998754
No 147
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-42 Score=346.87 Aligned_cols=208 Identities=29% Similarity=0.466 Sum_probs=177.1
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+. +. .|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus 1 i~~~~l~~~~~~---------------------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-~~~~G~i~ 56 (211)
T cd03298 1 VRLDKIRFSYGE---------------------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-TPQSGRVL 56 (211)
T ss_pred CEEEeEEEEeCC---------------------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence 468999998851 11 2999999999999999999999999999999977 57799999
Q ss_pred ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+....+. .. .++.+++++++++.+||.+..++.+ ..
T Consensus 57 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (211)
T cd03298 57 INGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GE 128 (211)
T ss_pred ECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----cc
Confidence 99998753 235679999999999999999999987542111 11 1234457889999999987777665 47
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|++
T Consensus 129 LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i 207 (211)
T cd03298 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRI 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999986 4899999999964 57789999999999999
Q ss_pred EEec
Q 005545 317 IYSG 320 (691)
Q Consensus 317 v~~G 320 (691)
++.|
T Consensus 208 ~~~~ 211 (211)
T cd03298 208 AAQG 211 (211)
T ss_pred eecC
Confidence 8764
No 148
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=7.2e-42 Score=348.37 Aligned_cols=210 Identities=29% Similarity=0.453 Sum_probs=182.6
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus 1 l~l~~v~~~~~---------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 58 (223)
T TIGR03740 1 LETKNLSKRFG---------------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEII 58 (223)
T ss_pred CEEEeEEEEEC---------------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence 46889998875 135899999999999999999999999999999999977 57899999
Q ss_pred ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545 160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS 239 (691)
Q Consensus 160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 239 (691)
++|+++....++.++|++|++.+++.+|++||+.+....+ ... .+++.++++.+||.+..++.+ +.||
T Consensus 59 ~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS 126 (223)
T TIGR03740 59 FDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKA-----KQFS 126 (223)
T ss_pred ECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhH-----hhCC
Confidence 9999875433357999999999999999999998765432 111 235778899999988777655 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEe
Q 005545 240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS 319 (691)
Q Consensus 240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~ 319 (691)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 127 ~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 127 LGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999999877899999999975 57789999999999999999
Q ss_pred cCHhH
Q 005545 320 GRAAQ 324 (691)
Q Consensus 320 G~~~~ 324 (691)
|++.+
T Consensus 206 ~~~~~ 210 (223)
T TIGR03740 206 GKINK 210 (223)
T ss_pred cChhh
Confidence 98653
No 149
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=355.30 Aligned_cols=219 Identities=25% Similarity=0.427 Sum_probs=185.5
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G-- 152 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~-- 152 (691)
...|+++|++++|+. +.+|+|+|++|++||+++|+||||||||||+++|+|++. +
T Consensus 11 ~~~l~~~~l~~~~~~---------------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~ 69 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---------------------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQ 69 (260)
T ss_pred CceEEEEEEEEEeCC---------------------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCC
Confidence 356999999999861 248999999999999999999999999999999999764 1
Q ss_pred CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--
Q 005545 153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-- 224 (691)
Q Consensus 153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-- 224 (691)
+++|+|.++|+++.. ..++.++|++|++.+++ .||+||+.+..... ...+.++..++++++++.+++.+
T Consensus 70 p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~ 146 (260)
T PRK10744 70 RAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLF--EKLSRAEMDERVEWALTKAALWNEV 146 (260)
T ss_pred CcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhc--CCCCHHHHHHHHHHHHHHcCCChhh
Confidence 479999999988741 34678999999998887 89999998765322 12334445567889999999843
Q ss_pred --cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHH
Q 005545 225 --CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLY 302 (691)
Q Consensus 225 --~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~ 302 (691)
..++. ...||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.
T Consensus 147 ~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~ 219 (260)
T PRK10744 147 KDKLHQS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAA 219 (260)
T ss_pred HHHHhcC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHH
Confidence 23333 357999999999999999999999999999999999999999999999964 789999999964 577
Q ss_pred hcCCEEEEecCCeEEEecCHhHHH
Q 005545 303 RMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 303 ~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
+++|++++|++|++++.|+++++.
T Consensus 220 ~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 220 RCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHH
Confidence 899999999999999999988874
No 150
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.1e-41 Score=350.51 Aligned_cols=216 Identities=31% Similarity=0.483 Sum_probs=188.1
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+. +.+|+|+|+++.+||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus 1 i~i~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~ 58 (237)
T TIGR00968 1 IEIANISKRFGS---------------------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-QPDSGRIR 58 (237)
T ss_pred CEEEEEEEEECC---------------------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEE
Confidence 468999998861 35999999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
++|.++.. ..++.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.+ +.
T Consensus 59 i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (237)
T TIGR00968 59 LNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQ 130 (237)
T ss_pred ECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 99998753 33568999999999999999999998765432 1233344567789999999987777655 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
|||||+||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 899999999964 57889999999999999
Q ss_pred EEecCHhHHH
Q 005545 317 IYSGRAAQVM 326 (691)
Q Consensus 317 v~~G~~~~~~ 326 (691)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988874
No 151
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-41 Score=348.62 Aligned_cols=216 Identities=32% Similarity=0.505 Sum_probs=188.0
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||++++.. +.+|+|+|+++++||+++|+|+||||||||+++|+|.+ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~---------------------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~-~~~~G~i~ 58 (232)
T cd03300 1 IELENVSKFYGG---------------------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE-TPTSGEIL 58 (232)
T ss_pred CEEEeEEEEeCC---------------------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEE
Confidence 468999998851 35999999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
++|+++.. ..++.++|++|++.+++.+|++||+.+....+ ........++++++++.+||.+..++.+ +.
T Consensus 59 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (232)
T cd03300 59 LDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQ 130 (232)
T ss_pred ECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 99998753 23568999999999998999999998765432 1233444567888999999987777655 47
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874 899999999964 57889999999999999
Q ss_pred EEecCHhHHH
Q 005545 317 IYSGRAAQVM 326 (691)
Q Consensus 317 v~~G~~~~~~ 326 (691)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999887764
No 152
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=351.79 Aligned_cols=222 Identities=23% Similarity=0.356 Sum_probs=184.0
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCce
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--GKFSG 156 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~~~~G 156 (691)
.++++||++.|+. +.+|+|+|+++++||+++|+||||||||||+|+|+|++. ++.+|
T Consensus 2 ~~~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G 60 (246)
T PRK14269 2 IAKTTNLNLFYGK---------------------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDG 60 (246)
T ss_pred ceeeeeeEEEECC---------------------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCce
Confidence 4789999999861 358999999999999999999999999999999999763 35799
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 157 KITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 157 ~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
+|.++|+++.. ..++.++|++|++.+++ .||+||+.++...+- ......+..++++++++.++|.+...... +
T Consensus 61 ~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~ 137 (246)
T PRK14269 61 LVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKL-K 137 (246)
T ss_pred EEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHh-c
Confidence 99999998753 34668999999998887 699999988643321 00122334456788999999953211111 1
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
...+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. .+.+.+|++++|+
T Consensus 138 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~ 215 (246)
T PRK14269 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH 215 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE
Confidence 23357999999999999999999999999999999999999999999999975 899999999964 5778999999999
Q ss_pred CCeEEEecCHhHHH
Q 005545 313 EGSPIYSGRAAQVM 326 (691)
Q Consensus 313 ~G~iv~~G~~~~~~ 326 (691)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~g~~~~~~ 229 (246)
T PRK14269 216 LGELIEFGESKEFF 229 (246)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988874
No 153
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=360.42 Aligned_cols=221 Identities=22% Similarity=0.385 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+.+.. ....+|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus 6 ~l~i~nl~~~~~~~~~----------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i 68 (289)
T PRK13645 6 DIILDNVSYTYAKKTP----------------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI-ISETGQT 68 (289)
T ss_pred eEEEEEEEEEeCCCCc----------------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceE
Confidence 5899999999962110 0134899999999999999999999999999999999977 4679999
Q ss_pred EECCEeCC---------hhccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccc
Q 005545 159 TYNGRQFS---------SSLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCR 226 (691)
Q Consensus 159 ~~~G~~~~---------~~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 226 (691)
.++|+++. ...++.++|++|++. ++ ..||+||+.+..... ....++..++++++++.++|. +..
T Consensus 69 ~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~ 144 (289)
T PRK13645 69 IVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYV 144 (289)
T ss_pred EECCEEccccccccccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 99998863 134568999999973 44 469999998865321 223444456788899999994 556
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~ 305 (691)
++.+ +.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++|
T Consensus 145 ~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~ 218 (289)
T PRK13645 145 KRSP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIA 218 (289)
T ss_pred cCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhC
Confidence 6554 47999999999999999999999999999999999999999999999986 4899999999964 578899
Q ss_pred CEEEEecCCeEEEecCHhHHH
Q 005545 306 DKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 306 D~v~~L~~G~iv~~G~~~~~~ 326 (691)
|++++|++|++++.|+++++.
T Consensus 219 d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 219 DEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988774
No 154
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=351.77 Aligned_cols=222 Identities=23% Similarity=0.379 Sum_probs=184.9
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--CC
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G--KF 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~--~~ 154 (691)
.|+++||+++|+. +.+|+|+|++|++||+++|+|+||||||||+++|+|+++ + ++
T Consensus 4 ~l~~~nl~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~ 62 (252)
T PRK14256 4 KVKLEQLNVHFGK---------------------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARV 62 (252)
T ss_pred EEEEEEEEEEeCC---------------------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCC
Confidence 4899999999861 358999999999999999999999999999999999864 2 25
Q ss_pred ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545 155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228 (691)
Q Consensus 155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 228 (691)
+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.+..... ......+..++++++++.+++.+....
T Consensus 63 ~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 140 (252)
T PRK14256 63 TGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKD 140 (252)
T ss_pred ceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhH
Confidence 8999999998742 34678999999999999999999998754321 112333445678889999998642211
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
... ..++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++
T Consensus 141 ~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i 217 (252)
T PRK14256 141 RLK-SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYT 217 (252)
T ss_pred Hhh-CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEE
Confidence 111 23457999999999999999999999999999999999999999999999976 589999999964 577899999
Q ss_pred EEecCCeEEEecCHhHHH
Q 005545 309 VVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~ 326 (691)
++|++|++++.|+++++.
T Consensus 218 ~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 218 AFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988874
No 155
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-42 Score=352.01 Aligned_cols=212 Identities=31% Similarity=0.469 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|.. +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus 3 ~l~~~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i 60 (241)
T PRK14250 3 EIEFKEVSYSSFG---------------------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-DPTEGSI 60 (241)
T ss_pred eEEEEeEEEEeCC---------------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence 5899999998851 34899999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 233 (691)
.++|+++.. ..++.++|++|++.+++ .||+||+.+....+ . . ..+++.++++.+||. +..++.+
T Consensus 61 ~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~--- 129 (241)
T PRK14250 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRDV--- 129 (241)
T ss_pred EECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCCc---
Confidence 999998742 34668999999998886 69999988653221 1 1 134677899999996 4455543
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|+
T Consensus 130 --~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~ 206 (241)
T PRK14250 130 --KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN 206 (241)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe
Confidence 579999999999999999999999999999999999999999999999874 899999999964 5778999999999
Q ss_pred CCeEEEecCHhHHH
Q 005545 313 EGSPIYSGRAAQVM 326 (691)
Q Consensus 313 ~G~iv~~G~~~~~~ 326 (691)
+|++++.|+++++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (241)
T PRK14250 207 KGILVEYAKTYDFF 220 (241)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988874
No 156
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-42 Score=349.62 Aligned_cols=215 Identities=27% Similarity=0.463 Sum_probs=184.0
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. + ..|+||++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus 2 l~~~~l~~~~~~---------------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 57 (232)
T PRK10771 2 LKLTDITWLYHH---------------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-TPASGSLT 57 (232)
T ss_pred eEEEEEEEEECC---------------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence 789999999961 1 13899999999999999999999999999999976 57799999
Q ss_pred ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
++|+++.. ..++.++|++|++.+++.+|+.||+.+...... .. .+...++++++++.+||++..++.+ +.
T Consensus 58 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 129 (232)
T PRK10771 58 LNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQ 129 (232)
T ss_pred ECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----cc
Confidence 99998753 234679999999999999999999987532110 11 2234557889999999987777766 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+.+|++++|++|++
T Consensus 130 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i 208 (232)
T PRK10771 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRI 208 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976 4899999999964 57789999999999999
Q ss_pred EEecCHhHHHH
Q 005545 317 IYSGRAAQVMD 327 (691)
Q Consensus 317 v~~G~~~~~~~ 327 (691)
++.|+.+++.+
T Consensus 209 ~~~g~~~~~~~ 219 (232)
T PRK10771 209 AWDGPTDELLS 219 (232)
T ss_pred EEeCCHHHHHh
Confidence 99999887743
No 157
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=356.30 Aligned_cols=221 Identities=22% Similarity=0.400 Sum_probs=184.8
Q ss_pred CccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-
Q 005545 74 SLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG- 152 (691)
Q Consensus 74 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~- 152 (691)
+..++.|+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+..+
T Consensus 8 ~~~~~~l~i~nl~~~~~~---------------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 66 (269)
T PRK14259 8 ISKNIIISLQNVTISYGT---------------------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLI 66 (269)
T ss_pred CCCCceEEEEeEEEEECC---------------------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc
Confidence 345578999999999862 3589999999999999999999999999999999997642
Q ss_pred ---CCceEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005545 153 ---KFSGKITYNGRQFS------SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223 (691)
Q Consensus 153 ---~~~G~I~~~G~~~~------~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 223 (691)
+++|+|.++|+++. ...++.++|++|++.+++ .||+||+.+.+..+ .... +..++++++++.+++.
T Consensus 67 ~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~ 141 (269)
T PRK14259 67 EGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---GYTG-DMDELVERSLRKAAVW 141 (269)
T ss_pred CCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCc
Confidence 57999999998863 134568999999999887 49999998865432 1122 2345677788888874
Q ss_pred c----cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545 224 R----CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS 299 (691)
Q Consensus 224 ~----~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~ 299 (691)
. ..++. ++.||||||||++|||+|+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||++.
T Consensus 142 ~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~- 214 (269)
T PRK14259 142 DECKDKLNES-----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ- 214 (269)
T ss_pred chhhhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-
Confidence 2 23433 357999999999999999999999999999999999999999999999965 689999999964
Q ss_pred HHHhcCCEEEEecC-----------CeEEEecCHhHHHH
Q 005545 300 RLYRMFDKVVVLSE-----------GSPIYSGRAAQVMD 327 (691)
Q Consensus 300 ~i~~~~D~v~~L~~-----------G~iv~~G~~~~~~~ 327 (691)
.+.++||++++|++ |++++.|+++++.+
T Consensus 215 ~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 215 QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 67899999999996 67899999988854
No 158
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-42 Score=337.00 Aligned_cols=218 Identities=34% Similarity=0.528 Sum_probs=188.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+.+||||++. .+++|++||++++|||++||+||||||||||||.|+|.+ .|.+|++
T Consensus 1 mi~a~nls~~~~---------------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel-~p~~G~v 58 (259)
T COG4559 1 MIRAENLSYSLA---------------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL-SPDSGEV 58 (259)
T ss_pred CeeeeeeEEEee---------------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc-CCCCCeE
Confidence 478999999987 256999999999999999999999999999999999977 4679999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL--TREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
.+||.+++. ++.+.-+.++|+..+-...||.|-+.++.. |... ...+..+.+++.|+..++.+.+.+.+
T Consensus 59 ~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-- 133 (259)
T COG4559 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRDY-- 133 (259)
T ss_pred eeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccch--
Confidence 999999864 456678999999887666899999998753 3322 22345556788999999988776654
Q ss_pred CCCcccCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 233 PLFRGISGGERKRVSIGQEMLV------NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
+.|||||||||.+||.|+. ++++|+||||||+||...+..++++.++++++|..|+++.||.+. ...+||
T Consensus 134 ---~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaD 209 (259)
T COG4559 134 ---RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYAD 209 (259)
T ss_pred ---hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhh
Confidence 5799999999999999985 446999999999999999999999999999999999999999764 678999
Q ss_pred EEEEecCCeEEEecCHhHHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~ 327 (691)
||++|++||++..|++++++.
T Consensus 210 rivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 210 RIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eeeeeeCCeEeecCCHHHhcC
Confidence 999999999999999998853
No 159
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=354.15 Aligned_cols=224 Identities=22% Similarity=0.349 Sum_probs=186.9
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---- 152 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---- 152 (691)
+..|+++||+++|+. +.+|+|+|+++++||+++|+|||||||||||++|+|++.+
T Consensus 18 ~~~l~~~nl~~~~~~---------------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~ 76 (267)
T PRK14237 18 EIALSTKDLHVYYGK---------------------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIA 76 (267)
T ss_pred CeEEEEeeEEEEECC---------------------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCC
Confidence 457999999999851 3589999999999999999999999999999999998742
Q ss_pred CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005545 153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226 (691)
Q Consensus 153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 226 (691)
+++|+|.++|+++.. ..++.++|++|++.+++ .||+||+.++.... ....+++..+++.++++.++|.+..
T Consensus 77 ~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i 153 (267)
T PRK14237 77 RVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQV 153 (267)
T ss_pred CcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchh
Confidence 579999999998742 24668999999998887 69999998864321 1123344456788899999985422
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
+... +..++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.++|+++++ +.|||++||++. ++.++||
T Consensus 154 ~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d 230 (267)
T PRK14237 154 KDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASD 230 (267)
T ss_pred hhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcC
Confidence 2222 123467999999999999999999999999999999999999999999999964 789999999975 5778999
Q ss_pred EEEEecCCeEEEecCHhHHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~ 327 (691)
++++|++|++++.|+++++..
T Consensus 231 ~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 231 YTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred EEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999988743
No 160
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.5e-41 Score=355.52 Aligned_cols=227 Identities=21% Similarity=0.369 Sum_probs=188.0
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|..+.+ ..+.+.+.+|+|+|+++++||+++|+|||||||||||++|+|++ ++.+|+|
T Consensus 4 ~l~~~~l~~~~~~~~~------------~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i 70 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG------------WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEL 70 (267)
T ss_pred eEEEeceEEEecCCCC------------cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence 5899999999962110 00011246999999999999999999999999999999999987 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVG 231 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 231 (691)
.++|.++.. ..++.++|++|++. +++.+||.|++.+...... .....+..++++++++.+||. +..++.+
T Consensus 71 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 147 (267)
T PRK15112 71 LIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP- 147 (267)
T ss_pred EECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-
Confidence 999998752 23457999999975 6788899999987654321 223444456788999999994 5555544
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEE
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++
T Consensus 148 ----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~ 222 (267)
T PRK15112 148 ----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLV 222 (267)
T ss_pred ----hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence 469999999999999999999999999999999999999999999999874 899999999964 57789999999
Q ss_pred ecCCeEEEecCHhHHH
Q 005545 311 LSEGSPIYSGRAAQVM 326 (691)
Q Consensus 311 L~~G~iv~~G~~~~~~ 326 (691)
|++|++++.|+++++.
T Consensus 223 l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 223 MHQGEVVERGSTADVL 238 (267)
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999988764
No 161
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.2e-41 Score=344.56 Aligned_cols=209 Identities=28% Similarity=0.438 Sum_probs=179.0
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
++++||++.|+. +++|+|+++++||+++|+||||||||||+|+|+|.+ ++.+|+|.
T Consensus 1 ~~~~~l~~~~~~-----------------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 56 (213)
T TIGR01277 1 LALDKVRYEYEH-----------------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-EPASGSIK 56 (213)
T ss_pred CeEEeeeEEeCC-----------------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEE
Confidence 468999988851 357999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
++|+++.. ..++.++|++|++.+++.+|+.||+.+...... . ...+..++++++++.+||.+..++.+ +.
T Consensus 57 ~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (213)
T TIGR01277 57 VNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQ 128 (213)
T ss_pred ECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----cc
Confidence 99998753 356789999999999999999999987542111 1 12223456788999999987777655 47
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|++|++
T Consensus 129 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i 207 (213)
T TIGR01277 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKI 207 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999864 899999999964 56789999999999999
Q ss_pred EEecC
Q 005545 317 IYSGR 321 (691)
Q Consensus 317 v~~G~ 321 (691)
++.|.
T Consensus 208 ~~~~~ 212 (213)
T TIGR01277 208 KVVSD 212 (213)
T ss_pred EEecC
Confidence 98875
No 162
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.2e-42 Score=402.53 Aligned_cols=219 Identities=34% Similarity=0.522 Sum_probs=188.2
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
-.++|+||+|+|.... ..+|+|+|++|++||.+||+|+||||||||+|+|+|++ .|.+|+
T Consensus 470 g~I~~~nvsf~y~~~~-------------------~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~ 529 (709)
T COG2274 470 GEIEFENVSFRYGPDD-------------------PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGR 529 (709)
T ss_pred ceEEEEEEEEEeCCCC-------------------cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCce
Confidence 3699999999998431 25899999999999999999999999999999999987 577999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccc
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-----AEMVIMELGLTRCRNS 228 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~ 228 (691)
|++||.+++. .+|+++|||+||+.+|. -|++||+.++.. ..+.++..+. +.+.++ .++...+|
T Consensus 530 I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p-----~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t 601 (709)
T COG2274 530 ILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGNP-----EATDEEIIEAAQLAGAHEFIE--NLPMGYDT 601 (709)
T ss_pred EEECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hccccccc
Confidence 9999999864 58999999999999995 599999987642 2333333222 233333 45677899
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|.++.+ |+|+|+++|+++ ..+.||||
T Consensus 602 ~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred cccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEE
Confidence 9985 4567999999999999999999999999999999999999999999999876 699999999975 47899999
Q ss_pred EEecCCeEEEecCHhHHHHH
Q 005545 309 VVLSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~~~ 328 (691)
++|++|+++++|+++|+++.
T Consensus 678 iVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 678 IVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred EEccCCceeccCCHHHHHHh
Confidence 99999999999999999864
No 163
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-41 Score=352.14 Aligned_cols=223 Identities=21% Similarity=0.395 Sum_probs=184.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C---
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-K--- 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~--- 153 (691)
..|+++||++.|.. +.+|+|+||+|++||+++|+||||||||||+++|+|++.+ +
T Consensus 11 ~~l~i~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~ 69 (259)
T PRK14274 11 EVYQINGMNLWYGQ---------------------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVK 69 (259)
T ss_pred ceEEEeeEEEEECC---------------------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCC
Confidence 46999999999861 3589999999999999999999999999999999997642 2
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
.+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.+....+ ....+++..++++++++.+++.+...
T Consensus 70 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 146 (259)
T PRK14274 70 LTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVK 146 (259)
T ss_pred CceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhh
Confidence 58999999998741 345689999999988875 9999998764322 11123444566788999999853211
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
... +...++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. .+.+.||+
T Consensus 147 ~~l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~ 223 (259)
T PRK14274 147 DRL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQ 223 (259)
T ss_pred hhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCE
Confidence 111 123357999999999999999999999999999999999999999999999975 789999999964 57889999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|+++..|+++++.+
T Consensus 224 i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 224 TAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred EEEEECCEEEEECCHHHHhh
Confidence 99999999999999988743
No 164
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-41 Score=347.54 Aligned_cols=216 Identities=34% Similarity=0.555 Sum_probs=187.2
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|+++.|. . ++|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~---------------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-~p~~G~v~ 57 (235)
T cd03299 1 LKVENLSKDWK---------------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKIL 57 (235)
T ss_pred CeeEeEEEEeC---------------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEE
Confidence 46788888875 1 2799999999999999999999999999999999977 57799999
Q ss_pred ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
++|.++.. ..++.++|++|++.+++.+|+.||+.+..... .....+..+++.++++.+||.+..++.+ +.
T Consensus 58 i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 129 (235)
T cd03299 58 LNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ET 129 (235)
T ss_pred ECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----cc
Confidence 99998753 23568999999999999999999998764322 2234455567788999999987777765 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
||||||||++|||+|+.+|++++|||||+|||+.+++.+.+.|++++++ |+|||++||++. ++.+.||++++|++|++
T Consensus 130 LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i 208 (235)
T cd03299 130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKL 208 (235)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 899999999964 57789999999999999
Q ss_pred EEecCHhHHHH
Q 005545 317 IYSGRAAQVMD 327 (691)
Q Consensus 317 v~~G~~~~~~~ 327 (691)
++.|+.+++.+
T Consensus 209 ~~~~~~~~~~~ 219 (235)
T cd03299 209 IQVGKPEEVFK 219 (235)
T ss_pred EEecCHHHHHh
Confidence 99999887643
No 165
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-42 Score=388.32 Aligned_cols=220 Identities=23% Similarity=0.384 Sum_probs=189.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCceE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-KFSGK 157 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~~~G~ 157 (691)
+|+++||+++|. ++.+|+|+||++++||+++|+||||||||||+|+|+|++++ +++|+
T Consensus 5 ~l~~~nl~~~~~---------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~ 63 (506)
T PRK13549 5 LLEMKNITKTFG---------------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGE 63 (506)
T ss_pred eEEEeeeEEEeC---------------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE
Confidence 699999999985 13599999999999999999999999999999999998753 47999
Q ss_pred EEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 158 ITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 158 I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
|.++|+++.. ..++.+|||+|++.+++.+||+||+.++...+.......++..++++++++.+||.+..++.+
T Consensus 64 i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 141 (506)
T PRK13549 64 IIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-- 141 (506)
T ss_pred EEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch--
Confidence 9999998753 134679999999999999999999988643221111233444567889999999987777766
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||++. .+.++||++++|+
T Consensus 142 ---~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~ 217 (506)
T PRK13549 142 ---GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIR 217 (506)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEE
Confidence 469999999999999999999999999999999999999999999999878999999999964 5778999999999
Q ss_pred CCeEEEecCHhHH
Q 005545 313 EGSPIYSGRAAQV 325 (691)
Q Consensus 313 ~G~iv~~G~~~~~ 325 (691)
+|++++.|+++++
T Consensus 218 ~G~i~~~~~~~~~ 230 (506)
T PRK13549 218 DGRHIGTRPAAGM 230 (506)
T ss_pred CCEEeeecccccC
Confidence 9999999987664
No 166
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=368.97 Aligned_cols=194 Identities=32% Similarity=0.522 Sum_probs=173.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 005545 118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--------SLKRKTGFVTQDDVLYPHLTVL 189 (691)
Q Consensus 118 ~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--------~~~~~igyv~Q~~~l~~~lTV~ 189 (691)
|+||++++||+++|+||||||||||||+|+|++ ++++|+|.++|+++.. ..++.++||+|++.+++++||+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT-RPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence 899999999999999999999999999999977 4679999999988642 2467899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545 190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269 (691)
Q Consensus 190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD 269 (691)
||+.|+.. ....++++++++.+||.+..++.+ +.|||||||||+|||||+.+|++|||||||+|||
T Consensus 95 enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD 160 (352)
T PRK11144 95 GNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred HHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 99987532 112356889999999988777765 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 270 STTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 270 ~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|+++..|+++++..
T Consensus 161 ~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 161 LPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999999999875 899999999964 6889999999999999999999998854
No 167
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=350.18 Aligned_cols=218 Identities=22% Similarity=0.382 Sum_probs=184.4
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----C
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----K 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~ 153 (691)
+.|+++||++.|+. +.+|+|+|+++++||+++|+|+||||||||+++|+|+..+ +
T Consensus 3 ~~l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~ 61 (251)
T PRK14270 3 IKMESKNLNLWYGE---------------------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61 (251)
T ss_pred cEEEEEEeEEEECC---------------------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCC
Confidence 46899999998851 3589999999999999999999999999999999997643 2
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR--- 224 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--- 224 (691)
.+|+|.++|+++.. ..++.++|++|++.+++ +|++||+.+..... ......+..++++++++.++|.+
T Consensus 62 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 138 (251)
T PRK14270 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIH--GIKDKKELDKIVEWALKKAALWDEVK 138 (251)
T ss_pred CccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhc--CCCcHHHHHHHHHHHHHHcCCchhhh
Confidence 68999999998742 24567999999999887 89999998865332 11123344567788999998842
Q ss_pred -cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545 225 -CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 225 -~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~ 303 (691)
..++. ++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+
T Consensus 139 ~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~ 211 (251)
T PRK14270 139 DDLKKS-----ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASR 211 (251)
T ss_pred hHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHH
Confidence 23333 457999999999999999999999999999999999999999999999976 589999999964 6788
Q ss_pred cCCEEEEecCCeEEEecCHhHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
+||++++|++|++++.|+++++.
T Consensus 212 ~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 212 VSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred hcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999998874
No 168
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=356.10 Aligned_cols=219 Identities=26% Similarity=0.456 Sum_probs=188.2
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|.+ ++.+|+|
T Consensus 4 ~l~~~~l~~~~~~~------------------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~~G~i 64 (277)
T PRK13642 4 ILEVENLVFKYEKE------------------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-EEFEGKV 64 (277)
T ss_pred eEEEEEEEEEcCCC------------------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCEE
Confidence 68999999999621 0134899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|+++.. ..++.+||++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++.+
T Consensus 65 ~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (277)
T PRK13642 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP--- 138 (277)
T ss_pred EECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 999998753 34678999999974 566789999998764321 2344455567889999999987777655
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .+|++++|+
T Consensus 139 --~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~ 214 (277)
T PRK13642 139 --ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMK 214 (277)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999875 9999999999754 54 699999999
Q ss_pred CCeEEEecCHhHHH
Q 005545 313 EGSPIYSGRAAQVM 326 (691)
Q Consensus 313 ~G~iv~~G~~~~~~ 326 (691)
+|++++.|+++++.
T Consensus 215 ~G~i~~~g~~~~~~ 228 (277)
T PRK13642 215 AGEIIKEAAPSELF 228 (277)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998875
No 169
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=349.72 Aligned_cols=221 Identities=29% Similarity=0.430 Sum_probs=182.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CC---C
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GK---F 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~---~ 154 (691)
.|+++||+++|.. +.+|+|+|+++++||+++|+||||||||||+++|+|+.. .+ .
T Consensus 5 ~l~~~~l~~~~~~---------------------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~ 63 (252)
T PRK14239 5 ILQVSDLSVYYNK---------------------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63 (252)
T ss_pred eEEEEeeEEEECC---------------------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCc
Confidence 6899999999861 358999999999999999999999999999999999742 23 4
Q ss_pred ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545 155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228 (691)
Q Consensus 155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 228 (691)
+|+|.++|+++.. .+++.++||+|++.+++ +||+||+.+....+ + ....+...++++++++.+++.+....
T Consensus 64 ~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~ 140 (252)
T PRK14239 64 TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKD 140 (252)
T ss_pred cceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHH
Confidence 8999999998731 34668999999998887 89999998764332 1 11223344567888999987532111
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
.. +..++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++
T Consensus 141 ~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i 217 (252)
T PRK14239 141 RL-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRT 217 (252)
T ss_pred HH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEE
Confidence 11 123357999999999999999999999999999999999999999999999975 689999999964 578899999
Q ss_pred EEecCCeEEEecCHhHHH
Q 005545 309 VVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~ 326 (691)
++|++|++++.|+.+++.
T Consensus 218 ~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 218 GFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999998874
No 170
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.6e-41 Score=369.00 Aligned_cols=198 Identities=34% Similarity=0.498 Sum_probs=175.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 005545 118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--------SLKRKTGFVTQDDVLYPHLTVL 189 (691)
Q Consensus 118 ~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--------~~~~~igyv~Q~~~l~~~lTV~ 189 (691)
|+||++++||+++|+||||||||||||+|+|++ ++++|+|.++|+++.. ..++.++|++|++.+++++||+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT-RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 999999999999999999999999999999977 4679999999998742 2456899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545 190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269 (691)
Q Consensus 190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD 269 (691)
||+.|+.... ...+..++++++++.+||.+..++.+ +.|||||||||+|||||+.+|++|||||||+|||
T Consensus 94 enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD 163 (354)
T TIGR02142 94 GNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163 (354)
T ss_pred HHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 9998865321 12334557889999999988777765 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 270 STTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 270 ~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|+++++..
T Consensus 164 ~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 164 DPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 99999999999999875 899999999964 5788999999999999999999988854
No 171
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-41 Score=341.23 Aligned_cols=194 Identities=42% Similarity=0.688 Sum_probs=166.1
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCce
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--KFSG 156 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~~~G 156 (691)
++.|+||+|.|+.+. +++.+|+|+||++++||+++|+||||||||||+++|+|+..+ +.+|
T Consensus 3 ~~~~~~~~~~~~~~~-----------------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G 65 (202)
T cd03233 3 TLSWRNISFTTGKGR-----------------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG 65 (202)
T ss_pred eEEEEccEEEeccCC-----------------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcce
Confidence 589999999998421 235699999999999999999999999999999999998742 6799
Q ss_pred EEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 157 KITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 157 ~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
+|.++|+++.. ..++.++|++|++.+++.+||+||+.+.+... .++
T Consensus 66 ~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~----- 114 (202)
T cd03233 66 DIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE----- 114 (202)
T ss_pred EEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----
Confidence 99999998753 35668999999999999999999998753210 222
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
.+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|+
T Consensus 115 ~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~ 194 (202)
T cd03233 115 FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY 194 (202)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE
Confidence 23569999999999999999999999999999999999999999999999875 67777776664556889999999999
Q ss_pred CCeEEEec
Q 005545 313 EGSPIYSG 320 (691)
Q Consensus 313 ~G~iv~~G 320 (691)
+|++++.|
T Consensus 195 ~G~i~~~g 202 (202)
T cd03233 195 EGRQIYYG 202 (202)
T ss_pred CCEEEecC
Confidence 99998765
No 172
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-41 Score=349.31 Aligned_cols=220 Identities=27% Similarity=0.416 Sum_probs=184.0
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC----
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK---- 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~---- 153 (691)
+.|+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+|+|+|++.+.
T Consensus 3 ~~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~ 61 (252)
T PRK14272 3 LLLSAQDVNIYYGD---------------------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR 61 (252)
T ss_pred EEEEEeeeEEEECC---------------------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCC
Confidence 46899999999861 35899999999999999999999999999999999986432
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC----
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT---- 223 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---- 223 (691)
.+|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.+..... ....+++..+.++++++.+++.
T Consensus 62 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~ 139 (252)
T PRK14272 62 VTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVK 139 (252)
T ss_pred CceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhh
Confidence 38999999998742 34567999999999999999999998764322 1112333445677777777763
Q ss_pred ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~ 303 (691)
+..++. ++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+
T Consensus 140 ~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~ 212 (252)
T PRK14272 140 DRLKTP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAAR 212 (252)
T ss_pred hhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHH
Confidence 233443 357999999999999999999999999999999999999999999999975 699999999965 5778
Q ss_pred cCCEEEEecCCeEEEecCHhHHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
.||++++|++|++++.|+++++..
T Consensus 213 ~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 213 VSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred hCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999988743
No 173
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=376.59 Aligned_cols=233 Identities=27% Similarity=0.417 Sum_probs=197.3
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
....++++||+..|..+.+ ++ .+..+...+++||||++++||++||+|+||||||||.|+|+|+.. |.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~--~~--------~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-P~~ 345 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKG--LF--------VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-PSS 345 (539)
T ss_pred cCceeEeeeeeeeeccccc--cc--------cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 4567999999999985431 11 011234679999999999999999999999999999999999874 689
Q ss_pred eEEEECCEeCC------hhccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cc
Q 005545 156 GKITYNGRQFS------SSLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CR 226 (691)
Q Consensus 156 G~I~~~G~~~~------~~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 226 (691)
|+|.++|.+.. ...++++.+|+||+. +.|.+||++.|........ .....++++++.++++.+||.. ..
T Consensus 346 G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~--~~~~~~~~~rv~~ll~~VgL~~~~l 423 (539)
T COG1123 346 GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG--GGSGAERRARVAELLELVGLPPEFL 423 (539)
T ss_pred ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhc--ccchHHHHHHHHHHHHHcCCCHHHH
Confidence 99999998731 135678999999975 9999999999987655432 2235666778999999999985 34
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~ 305 (691)
++ ++.+||||||||++|||||+.+|++|++|||||.||+..+.+++++|++++++ |.|.|++|||. ..+.++|
T Consensus 424 ~r-----yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~ 497 (539)
T COG1123 424 DR-----YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIA 497 (539)
T ss_pred hc-----CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhC
Confidence 43 45689999999999999999999999999999999999999999999999975 99999999996 5689999
Q ss_pred CEEEEecCCeEEEecCHhHHHH
Q 005545 306 DKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 306 D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
|||++|++|++|+.|+.+++++
T Consensus 498 drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 498 DRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred ceEEEEECCeEEEeCCHHHHhc
Confidence 9999999999999999998854
No 174
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-41 Score=348.19 Aligned_cols=222 Identities=24% Similarity=0.402 Sum_probs=184.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~ 154 (691)
.|+++||++.|+. +.+|+|+||++++||+++|+||||||||||+++|+|+..+ +.
T Consensus 3 ~l~~~~l~~~~~~---------------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~ 61 (250)
T PRK14262 3 IIEIENFSAYYGE---------------------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV 61 (250)
T ss_pred eEEEEeeEEEeCC---------------------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCc
Confidence 5899999999851 3589999999999999999999999999999999997642 37
Q ss_pred ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545 155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228 (691)
Q Consensus 155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 228 (691)
+|+|.++|.++.. ..++.++|++|++.+++ .||+||+.+..... .....+...+.++++++.+|+.+..+.
T Consensus 62 ~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 138 (250)
T PRK14262 62 EGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIH--GVKSKHKLDRIVEESLKKAALWDEVKS 138 (250)
T ss_pred ceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHcCCCchhHH
Confidence 9999999988742 24568999999999887 89999998765322 111233345567888999998542111
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
. .+..+++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++
T Consensus 139 ~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i 215 (250)
T PRK14262 139 E-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYI 215 (250)
T ss_pred H-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEE
Confidence 1 1223467999999999999999999999999999999999999999999999975 789999999965 577899999
Q ss_pred EEecCCeEEEecCHhHHHH
Q 005545 309 VVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~~ 327 (691)
++|++|+++..|+++++.+
T Consensus 216 ~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 216 AFMYRGELIEYGPTREIVE 234 (250)
T ss_pred EEEECCEEEEecCHHHHHh
Confidence 9999999999999988753
No 175
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-41 Score=347.96 Aligned_cols=217 Identities=23% Similarity=0.402 Sum_probs=182.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C---C
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-K---F 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~---~ 154 (691)
.|+++||++.|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+..+ + +
T Consensus 3 ~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~ 61 (250)
T PRK14240 3 KISVKDLDLFYGD---------------------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKI 61 (250)
T ss_pred eEEEEEEEEEECC---------------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC
Confidence 4889999999861 2489999999999999999999999999999999997532 2 6
Q ss_pred ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----
Q 005545 155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR---- 224 (691)
Q Consensus 155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---- 224 (691)
+|+|.++|+++.. ..++.++|++|++.+++ +|++||+.+....+ .....++..++++++++.+++.+
T Consensus 62 ~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~ 138 (250)
T PRK14240 62 EGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTH--GIKDKKKLDEIVEKSLKGAALWDEVKD 138 (250)
T ss_pred ceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhHH
Confidence 8999999998742 34668999999998887 89999998865332 11123344567888899988743
Q ss_pred cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM 304 (691)
Q Consensus 225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~ 304 (691)
..++. ++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.
T Consensus 139 ~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~ 211 (250)
T PRK14240 139 RLKKS-----ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRI 211 (250)
T ss_pred HHhcC-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhh
Confidence 23333 357999999999999999999999999999999999999999999999965 799999999964 57889
Q ss_pred CCEEEEecCCeEEEecCHhHHH
Q 005545 305 FDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 305 ~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
+|++++|++|++++.|+++++.
T Consensus 212 ~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 212 SDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988774
No 176
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2e-41 Score=374.82 Aligned_cols=227 Identities=30% Similarity=0.452 Sum_probs=197.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC---Cc
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK---FS 155 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~---~~ 155 (691)
.|+++||+.+|...+ +...+++||||++++||++||+|.|||||||+.++|.|+++.. .+
T Consensus 5 lL~V~nL~v~~~~~~-----------------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~ 67 (539)
T COG1123 5 LLEVENLTVEFATDG-----------------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITS 67 (539)
T ss_pred eEEEeceEEEEecCC-----------------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccc
Confidence 799999999998531 1246999999999999999999999999999999999988533 48
Q ss_pred eEEEECCEeCCh-------h-ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545 156 GKITYNGRQFSS-------S-LKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225 (691)
Q Consensus 156 G~I~~~G~~~~~-------~-~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 225 (691)
|+|.++|+++.. . ..+.|+||||++. +.|-+||.+.+.-....+. ..+.++.++++.++|+++||++.
T Consensus 68 G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~ 145 (539)
T COG1123 68 GEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDP 145 (539)
T ss_pred eEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCCh
Confidence 999999997632 1 2358999999974 7888999998876655442 33478888899999999999876
Q ss_pred ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhc
Q 005545 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRM 304 (691)
Q Consensus 226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~ 304 (691)
... +.++.+|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. .+.++
T Consensus 146 ~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~ 221 (539)
T COG1123 146 ERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAEL 221 (539)
T ss_pred hhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHh
Confidence 654 456789999999999999999999999999999999999999999999999996 5999999999974 68899
Q ss_pred CCEEEEecCCeEEEecCHhHHHHH
Q 005545 305 FDKVVVLSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 305 ~D~v~~L~~G~iv~~G~~~~~~~~ 328 (691)
||||+||++|++++.|+++++++.
T Consensus 222 aDrv~Vm~~G~iVE~G~~~~i~~~ 245 (539)
T COG1123 222 ADRVVVMYKGEIVETGPTEEILSN 245 (539)
T ss_pred cCeEEEEECCEEEEecCHHHHHhc
Confidence 999999999999999999999864
No 177
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-41 Score=351.60 Aligned_cols=218 Identities=23% Similarity=0.378 Sum_probs=182.2
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--C
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G--K 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~--~ 153 (691)
..|+++||+++|+. +.+|+|+|+++++||+++|+|+||||||||+++|+|+.. + +
T Consensus 20 ~~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~ 78 (268)
T PRK14248 20 HILEVKDLSIYYGE---------------------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78 (268)
T ss_pred ceEEEEEEEEEeCC---------------------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCC
Confidence 36999999999861 358999999999999999999999999999999999652 1 5
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR--- 224 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--- 224 (691)
++|+|.++|+++.. ..++.++|++|++.+++. ||+||+.+..... .........+.+.+.++.+++.+
T Consensus 79 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 155 (268)
T PRK14248 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVK 155 (268)
T ss_pred CceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchH
Confidence 79999999998742 245689999999988875 9999998764322 11122233456778888888852
Q ss_pred -cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545 225 -CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 225 -~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~ 303 (691)
..++. ++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+
T Consensus 156 ~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~ 228 (268)
T PRK14248 156 DRLHSS-----ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALR 228 (268)
T ss_pred HHHhcC-----cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHH
Confidence 23333 357999999999999999999999999999999999999999999999976 689999999964 5778
Q ss_pred cCCEEEEecCCeEEEecCHhHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
+||++++|++|++++.|+++++.
T Consensus 229 ~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 229 VSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988774
No 178
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=355.11 Aligned_cols=219 Identities=29% Similarity=0.410 Sum_probs=183.8
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC-----
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----- 154 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~----- 154 (691)
|+++||+++|. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +.
T Consensus 2 l~~~nl~~~~~---------------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~ 59 (272)
T PRK13547 2 LTADHLHVARR---------------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRG 59 (272)
T ss_pred eEEEEEEEEEC---------------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-Ccccccc
Confidence 78999999885 1358999999999999999999999999999999999874 44
Q ss_pred ---ceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccc
Q 005545 155 ---SGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCR 226 (691)
Q Consensus 155 ---~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~ 226 (691)
+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.+....... ......+..++++++++.+||.+..
T Consensus 60 ~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 139 (272)
T PRK13547 60 ARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV 139 (272)
T ss_pred cCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh
Confidence 8999999998742 3455789999998766679999999875321100 0111123445688899999998766
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEML---------VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQ 296 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~ 296 (691)
++.+ ..|||||||||+|||+|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+
T Consensus 140 ~~~~-----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~ 214 (272)
T PRK13547 140 GRDV-----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD 214 (272)
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6655 469999999999999999 599999999999999999999999999999875 8999999999
Q ss_pred CchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545 297 PSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 297 p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
+. .+.++||++++|++|++++.|+++++.
T Consensus 215 ~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 215 PN-LAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HH-HHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 65 577899999999999999999988763
No 179
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-42 Score=328.29 Aligned_cols=211 Identities=30% Similarity=0.493 Sum_probs=187.3
Q ss_pred CccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----------------hc
Q 005545 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----------------SL 169 (691)
Q Consensus 107 ~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----------------~~ 169 (691)
.|+|+...+|++||++.++|+++.|||.|||||||+|+||.- +..|..|.|.+||+.+.- .+
T Consensus 13 HK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~-LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF-LEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred HhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHh-hcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 345667789999999999999999999999999999999986 446789999999987630 24
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHH
Q 005545 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIG 249 (691)
Q Consensus 170 ~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 249 (691)
|.+.|+|+|..+++.++||.||+.-+..-- -..++.+..++++..|.++|+.+..+.+.. .|||||+||++||
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~-----~LSGGQQQR~aIA 164 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYPA-----HLSGGQQQRVAIA 164 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCcc-----ccCchHHHHHHHH
Confidence 557999999999999999999987543211 145788888999999999999998886554 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545 250 QEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 250 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
|||+.+|+++++|||||+|||.-.-++++.+++|+++|+|++++||.+. .+.+...+|++|++|.+-+.|++++++
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEeecceecccCChHHHh
Confidence 9999999999999999999999999999999999999999999999964 578899999999999999999999984
No 180
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-41 Score=347.93 Aligned_cols=221 Identities=23% Similarity=0.379 Sum_probs=182.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~ 154 (691)
.|+++||++.|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+.++ ++
T Consensus 3 ~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~ 61 (249)
T PRK14253 3 KFNIENLDLFYGE---------------------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKI 61 (249)
T ss_pred eEEEeccEEEECC---------------------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC
Confidence 5889999998861 3589999999999999999999999999999999997643 35
Q ss_pred ceEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 005545 155 SGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229 (691)
Q Consensus 155 ~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 229 (691)
+|+|.++|.++.. ..++.++|++|++.+++ .||.||+.+..... ....++...+++.+.++.+++.+.....
T Consensus 62 ~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 138 (249)
T PRK14253 62 TGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDR 138 (249)
T ss_pred ceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHH
Confidence 8999999988731 34668999999999887 89999998764321 1112333445677888888875322111
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
. +..+..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+++
T Consensus 139 ~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~ 215 (249)
T PRK14253 139 L-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTA 215 (249)
T ss_pred h-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEE
Confidence 1 123357999999999999999999999999999999999999999999999976 589999999964 6788999999
Q ss_pred EecCCeEEEecCHhHHH
Q 005545 310 VLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~~~ 326 (691)
+|++|++++.|+.+++.
T Consensus 216 ~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 216 FFLMGELVEHDDTQVIF 232 (249)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
No 181
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.9e-42 Score=395.78 Aligned_cols=216 Identities=26% Similarity=0.407 Sum_probs=181.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+|+||+|.+.. ++.+|+|+|+++++||.+||+||||||||||+++|+|.+ |.+|+
T Consensus 348 ~~i~~~~vsf~~~~--------------------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~ 405 (588)
T PRK11174 348 VTIEAEDLEILSPD--------------------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGS 405 (588)
T ss_pred ceEEEEeeEEeccC--------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcE
Confidence 36999999987642 135899999999999999999999999999999999976 46999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccc
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-----EMVIMELGLTRCRNS 228 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~ 228 (691)
|.+||+++.+ .+|+.++||+|++.+|+ -|++|||.++. | +.++++..+.+ ++.++ .|++..||
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~-~~~~eei~~al~~a~l~~~i~--~lp~G~dT 477 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN----P-DASDEQLQQALENAWVSEFLP--LLPQGLDT 477 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC----C-CCCHHHHHHHHHHhCHHHHHH--hccccccc
Confidence 9999998863 57889999999999996 59999998852 1 23444333222 22222 24567789
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
.+|+. ...||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ ..+.+|+|
T Consensus 478 ~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvIiItHrl~--~i~~aD~I 553 (588)
T PRK11174 478 PIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLMVTHQLE--DLAQWDQI 553 (588)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecChH--HHHhCCEE
Confidence 99863 466999999999999999999999999999999999999999999999864 799999999974 35789999
Q ss_pred EEecCCeEEEecCHhHHHH
Q 005545 309 VVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~~ 327 (691)
++|++|++++.|+++++.+
T Consensus 554 ivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 554 WVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEEeCCeEeecCCHHHHHh
Confidence 9999999999999999864
No 182
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-41 Score=347.56 Aligned_cols=223 Identities=22% Similarity=0.368 Sum_probs=182.8
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--C
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G--K 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~--~ 153 (691)
+--+++||+++|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+.. + +
T Consensus 4 ~~~~~~~l~~~~~---------------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~ 62 (251)
T PRK14244 4 IHASVKNLNLWYG---------------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCK 62 (251)
T ss_pred eEEEeeeEEEEEC---------------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCC
Confidence 3457899999885 1358999999999999999999999999999999999763 1 3
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
.+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.+....+ .......+..+.+.++++.+||.+...
T Consensus 63 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~ 140 (251)
T PRK14244 63 VKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELG 140 (251)
T ss_pred cceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhh
Confidence 69999999988642 246689999999988875 9999998764332 111123344456788999999965321
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+... ..++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. .+.++||+
T Consensus 141 ~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~ 217 (251)
T PRK14244 141 DRLK-DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDR 217 (251)
T ss_pred hHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCE
Confidence 1111 23357999999999999999999999999999999999999999999999965 899999999965 57789999
Q ss_pred EEEecCCeEEEecCHhHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~ 326 (691)
+++|++|++++.|+++++.
T Consensus 218 i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 218 VAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988774
No 183
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.8e-41 Score=349.28 Aligned_cols=218 Identities=27% Similarity=0.400 Sum_probs=183.3
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus 6 ~l~~~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i 63 (258)
T PRK11701 6 LLSVRGLTKLYGP---------------------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-APDAGEV 63 (258)
T ss_pred eEEEeeeEEEcCC---------------------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence 6999999999861 35899999999999999999999999999999999977 4779999
Q ss_pred EECCEe-----CCh----h----ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005545 159 TYNGRQ-----FSS----S----LKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223 (691)
Q Consensus 159 ~~~G~~-----~~~----~----~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 223 (691)
.++|++ +.. . .++.++|++|++. +++.+|++||+.+..... . .....+..+++.++++.+++.
T Consensus 64 ~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~ 141 (258)
T PRK11701 64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEID 141 (258)
T ss_pred EECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCC
Confidence 999987 532 1 2457999999974 677889999987643211 1 112233456788999999996
Q ss_pred c-cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHH
Q 005545 224 R-CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRL 301 (691)
Q Consensus 224 ~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i 301 (691)
+ ..++.+ +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+
T Consensus 142 ~~~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~ 215 (258)
T PRK11701 142 AARIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VA 215 (258)
T ss_pred hhHHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HH
Confidence 4 455544 579999999999999999999999999999999999999999999999874 899999999964 57
Q ss_pred HhcCCEEEEecCCeEEEecCHhHHH
Q 005545 302 YRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 302 ~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
.+.+|++++|++|++++.|+++++.
T Consensus 216 ~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 216 RLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 7899999999999999999988764
No 184
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-41 Score=347.29 Aligned_cols=218 Identities=28% Similarity=0.441 Sum_probs=182.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----C
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----K 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~ 153 (691)
..|+++||+++|+. +.+|+|+|++|++||+++|+|+||||||||+++|+|+..+ +
T Consensus 3 ~~l~~~~l~~~~~~---------------------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~ 61 (251)
T PRK14251 3 NIISAKDVHLSYGN---------------------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61 (251)
T ss_pred ceEEEEeeEEEECC---------------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCC
Confidence 36899999999861 3589999999999999999999999999999999997642 3
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR--- 224 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--- 224 (691)
.+|+|.++|+++.. ..++.++|++|++.+++ .||+||+.+..... .....+...++++++++.+++..
T Consensus 62 ~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 138 (251)
T PRK14251 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAIWKETK 138 (251)
T ss_pred cceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCcchH
Confidence 69999999998742 24667999999998886 79999998764322 11122333456788899999842
Q ss_pred -cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545 225 -CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 225 -~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~ 303 (691)
..+. .++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+
T Consensus 139 ~~~~~-----~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~ 211 (251)
T PRK14251 139 DNLDR-----NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGR 211 (251)
T ss_pred HHhcc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHh
Confidence 2333 3357999999999999999999999999999999999999999999999965 689999999964 5778
Q ss_pred cCCEEEEecCCeEEEecCHhHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
.+|++++|++|+++..|+++++.
T Consensus 212 ~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 212 ISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred hcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988874
No 185
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=383.82 Aligned_cols=219 Identities=25% Similarity=0.442 Sum_probs=188.9
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|.. +.+|+|+||++++||+++|+||||||||||||+|+|++ ++++|+|
T Consensus 4 ~i~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i 61 (501)
T PRK10762 4 LLQLKGIDKAFPG---------------------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY-TRDAGSI 61 (501)
T ss_pred eEEEeeeEEEeCC---------------------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence 5899999999851 35899999999999999999999999999999999987 4679999
Q ss_pred EECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 159 TYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 159 ~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
.++|+++.. . .++.++||+|++.+++.+||+||+.++...+.. ......+.+++++++++.+||.+..++.++
T Consensus 62 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 140 (501)
T PRK10762 62 LYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG- 140 (501)
T ss_pred EECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-
Confidence 999998742 1 246799999999999999999999886432110 112334445678899999999887777664
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||+. ++.++||++++|+
T Consensus 141 ----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~ 215 (501)
T PRK10762 141 ----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR 215 (501)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 69999999999999999999999999999999999999999999999878999999999964 5788999999999
Q ss_pred CCeEEEecCHhHH
Q 005545 313 EGSPIYSGRAAQV 325 (691)
Q Consensus 313 ~G~iv~~G~~~~~ 325 (691)
+|+++..|+++++
T Consensus 216 ~G~i~~~~~~~~~ 228 (501)
T PRK10762 216 DGQFIAEREVADL 228 (501)
T ss_pred CCEEEEecCcCcC
Confidence 9999999987654
No 186
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-41 Score=352.78 Aligned_cols=221 Identities=23% Similarity=0.377 Sum_probs=184.1
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C-
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G- 152 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~- 152 (691)
....|+++||+++|.. +.+|+|+|++|++||+++|+||||||||||+++|+|+.. +
T Consensus 36 ~~~~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~ 94 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE---------------------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPS 94 (286)
T ss_pred CceEEEEeeeEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 3457999999999851 248999999999999999999999999999999999752 2
Q ss_pred -CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--
Q 005545 153 -KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-- 223 (691)
Q Consensus 153 -~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-- 223 (691)
+.+|+|.++|+++.. ..++.++|++|++.+++. ||.||+.+....+ ...+.....+++.++++.+|+.
T Consensus 95 ~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~ 171 (286)
T PRK14275 95 CHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLH--GINDKKQLEEIVEKSLRKAALWDE 171 (286)
T ss_pred CCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhc--CCCcHHHHHHHHHHHHHHhCCccc
Confidence 379999999988642 246689999999988875 9999999865332 1112233345677888988874
Q ss_pred --ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH
Q 005545 224 --RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRL 301 (691)
Q Consensus 224 --~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i 301 (691)
+..++. +..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+
T Consensus 172 l~~~~~~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~ 244 (286)
T PRK14275 172 VSDRLDKN-----ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QA 244 (286)
T ss_pred hhhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HH
Confidence 333433 357999999999999999999999999999999999999999999999976 589999999964 57
Q ss_pred HhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 302 YRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 302 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
.++||++++|++|++++.|+++++..
T Consensus 245 ~~~~d~i~~L~~G~i~~~g~~~~~~~ 270 (286)
T PRK14275 245 SRVSDYTMFFYEGVLVEHAPTAQLFT 270 (286)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 78999999999999999999888743
No 187
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=384.44 Aligned_cols=220 Identities=25% Similarity=0.422 Sum_probs=189.0
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|.. +.+|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+
T Consensus 4 ~~l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~ 61 (510)
T PRK09700 4 PYISMAGIGKSFGP---------------------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH-EPTKGT 61 (510)
T ss_pred ceEEEeeeEEEcCC---------------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc-CCCccE
Confidence 46999999999851 35899999999999999999999999999999999977 467999
Q ss_pred EEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhc--C-CC-CCCHHHHHHHHHHHHHHcCCCccccc
Q 005545 158 ITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLR--L-PK-KLTREEKIEQAEMVIMELGLTRCRNS 228 (691)
Q Consensus 158 I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~--~-~~-~~~~~~~~~~v~~~l~~lgL~~~~~~ 228 (691)
|.++|+++.. ..++.++||+|++.+++.+||+||+.++.... . .. ....++..++++++++.+||.+..++
T Consensus 62 i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 141 (510)
T PRK09700 62 ITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE 141 (510)
T ss_pred EEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCccc
Confidence 9999998753 12457999999999999999999998753210 0 00 01234445678899999999887777
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
.++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||++. .+..+||++
T Consensus 142 ~~~-----~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v 215 (510)
T PRK09700 142 KVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRY 215 (510)
T ss_pred chh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 664 69999999999999999999999999999999999999999999999888999999999964 577899999
Q ss_pred EEecCCeEEEecCHhHH
Q 005545 309 VVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~ 325 (691)
++|++|++++.|+++++
T Consensus 216 ~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 216 TVMKDGSSVCSGMVSDV 232 (510)
T ss_pred EEEECCEEeeecchhhC
Confidence 99999999999988765
No 188
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-41 Score=351.08 Aligned_cols=224 Identities=27% Similarity=0.424 Sum_probs=187.0
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---- 152 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---- 152 (691)
...|+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|++++
T Consensus 19 ~~~l~i~nl~~~~~~---------------------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~ 77 (276)
T PRK14271 19 APAMAAVNLTLGFAG---------------------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGY 77 (276)
T ss_pred CcEEEEeeEEEEECC---------------------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCC
Confidence 347899999999962 3589999999999999999999999999999999998743
Q ss_pred CCceEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 153 KFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 153 ~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
+.+|+|.++|.++.. ..++.++|++|++.+++ .||+||+.+..... ...+..+..+++.++++.++|.+..+
T Consensus 78 ~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 154 (276)
T PRK14271 78 RYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVK 154 (276)
T ss_pred CCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhh
Confidence 469999999988742 34678999999998887 89999998764321 11234444556788899999875322
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+... ..++.||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||++. ++.+++|+
T Consensus 155 ~~l~-~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dr 231 (276)
T PRK14271 155 DRLS-DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDR 231 (276)
T ss_pred hHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 2111 23457999999999999999999999999999999999999999999999986 489999999964 57889999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++.+
T Consensus 232 i~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 232 AALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988743
No 189
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-41 Score=340.43 Aligned_cols=190 Identities=31% Similarity=0.485 Sum_probs=166.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 005545 118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--------SLKRKTGFVTQDDVLYPHLTVL 189 (691)
Q Consensus 118 ~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--------~~~~~igyv~Q~~~l~~~lTV~ 189 (691)
|+|+++++ |+++|+||||||||||+++|+|++ ++.+|+|.++|.++.. ..++.++|++|++.+++.+|++
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE-KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence 99999999 999999999999999999999987 4679999999988641 2356899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545 190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269 (691)
Q Consensus 190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD 269 (691)
||+.+..... .....+++++++++.+|+.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||
T Consensus 94 ~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 163 (214)
T cd03297 94 ENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALD 163 (214)
T ss_pred HHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9998764321 22334567889999999987666655 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEec
Q 005545 270 STTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320 (691)
Q Consensus 270 ~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G 320 (691)
+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 164 RALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999875 899999999964 577899999999999998765
No 190
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=349.64 Aligned_cols=222 Identities=24% Similarity=0.363 Sum_probs=184.3
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----C
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----K 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~ 153 (691)
..|+++|++++|.. +.+|+|+||+|++||+++|+||||||||||+++|+|++.+ +
T Consensus 24 ~~l~~~nl~~~~~~---------------------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~ 82 (272)
T PRK14236 24 TALEVRNLNLFYGD---------------------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82 (272)
T ss_pred cEEEEEEEEEEECC---------------------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCC
Confidence 36999999999851 3589999999999999999999999999999999998643 4
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
.+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.+..... ....+++..++++++++.+++.+...
T Consensus 83 ~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 159 (272)
T PRK14236 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVK 159 (272)
T ss_pred CceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHH
Confidence 79999999998742 346789999999998886 9999998764332 11123334456788899999863211
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.. +..++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||+
T Consensus 160 ~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~ 236 (272)
T PRK14236 160 DRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDY 236 (272)
T ss_pred HHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCE
Confidence 111 123357999999999999999999999999999999999999999999999986 689999999964 57789999
Q ss_pred EEEecCCeEEEecCHhHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~ 326 (691)
+++|++|++++.|+++++.
T Consensus 237 i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 237 TAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEEEECCEEEecCCHHHHh
Confidence 9999999999999988774
No 191
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-41 Score=334.76 Aligned_cols=188 Identities=46% Similarity=0.792 Sum_probs=165.3
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCceE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGK 157 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G~ 157 (691)
.|+++|+++.|+... +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.. ++.+|+
T Consensus 3 ~l~~~~l~~~~~~~~-----------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~ 65 (192)
T cd03232 3 VLTWKNLNYTVPVKG-----------------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE 65 (192)
T ss_pred EEEEeeeEEEecCCC-----------------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Confidence 589999999996310 11458999999999999999999999999999999999753 467999
Q ss_pred EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
|.++|+++....++.++|++|++.+++.+||+||+.+.... + .
T Consensus 66 i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~ 108 (192)
T cd03232 66 ILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------G 108 (192)
T ss_pred EEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------c
Confidence 99999987655567899999999999999999999864310 0 4
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC-CeE
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE-GSP 316 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~-G~i 316 (691)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++..++.+.||++++|++ |++
T Consensus 109 LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i 188 (192)
T cd03232 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKT 188 (192)
T ss_pred CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeE
Confidence 8999999999999999999999999999999999999999999999877999999999976446789999999999 999
Q ss_pred EEec
Q 005545 317 IYSG 320 (691)
Q Consensus 317 v~~G 320 (691)
++.|
T Consensus 189 ~~~g 192 (192)
T cd03232 189 VYFG 192 (192)
T ss_pred EeCC
Confidence 9876
No 192
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.5e-41 Score=349.09 Aligned_cols=214 Identities=29% Similarity=0.512 Sum_probs=172.5
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|... .+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 i~~~~l~~~~~~~-------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~ 60 (237)
T cd03252 1 ITFEHVRFRYKPD-------------------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY-VPENGRVL 60 (237)
T ss_pred CEEEEEEEecCCC-------------------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEE
Confidence 4689999988521 135899999999999999999999999999999999987 46799999
Q ss_pred ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccc
Q 005545 160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI-----EQAEMVIMEL--GLTRCRNS 228 (691)
Q Consensus 160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~ 228 (691)
++|.++.. ..++.++|++|++.+++ .||.||+.+... ........ ..+.++++.+ ++....+.
T Consensus 61 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 134 (237)
T cd03252 61 VDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE 134 (237)
T ss_pred ECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc
Confidence 99988742 34678999999998775 699999976421 11111111 1123344444 33333333
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
.++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. .+ ..||++
T Consensus 135 -----~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v 206 (237)
T cd03252 135 -----QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRI 206 (237)
T ss_pred -----CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEE
Confidence 3357999999999999999999999999999999999999999999999975 899999999975 45 569999
Q ss_pred EEecCCeEEEecCHhHHHH
Q 005545 309 VVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~~ 327 (691)
++|++|++++.|+++++.+
T Consensus 207 ~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 207 IVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred EEEECCEEEEEcCHHHHHh
Confidence 9999999999999888754
No 193
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.1e-40 Score=346.59 Aligned_cols=216 Identities=23% Similarity=0.358 Sum_probs=181.8
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC---
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK--- 153 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~--- 153 (691)
|..|+++||+++|. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +
T Consensus 2 ~~~l~~~~l~~~~~----------------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~ 58 (254)
T PRK10418 2 PQQIELRNIALQAA----------------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVR 58 (254)
T ss_pred CcEEEEeCeEEEec----------------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCC
Confidence 45799999999882 248999999999999999999999999999999999874 4
Q ss_pred -CceEEEECCEeCCh-h-ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---c
Q 005545 154 -FSGKITYNGRQFSS-S-LKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR---C 225 (691)
Q Consensus 154 -~~G~I~~~G~~~~~-~-~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~ 225 (691)
++|+|.++|+++.. . .++.++||+|++. +.+.+|+.+++.+.+... .... ..+++.++++.++|.+ .
T Consensus 59 ~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~ 133 (254)
T PRK10418 59 QTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARV 133 (254)
T ss_pred CcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhh
Confidence 79999999998753 2 2357999999974 456689999987643221 1112 2256888999999975 2
Q ss_pred ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhc
Q 005545 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRM 304 (691)
Q Consensus 226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~ 304 (691)
.++.+ +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++
T Consensus 134 ~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~ 207 (254)
T PRK10418 134 LKLYP-----FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARL 207 (254)
T ss_pred hhcCC-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHh
Confidence 34443 579999999999999999999999999999999999999999999999864 899999999964 57789
Q ss_pred CCEEEEecCCeEEEecCHhHHH
Q 005545 305 FDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 305 ~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
+|++++|++|++++.|+++++.
T Consensus 208 ~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 208 ADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999988874
No 194
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=347.28 Aligned_cols=217 Identities=25% Similarity=0.430 Sum_probs=183.1
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--C--C
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--K--F 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~--~ 154 (691)
.|+++||++.|.. +.+|+|+|+++++||+++|+|+||||||||+|+|+|++++ + +
T Consensus 7 ~l~~~~l~~~~~~---------------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~ 65 (259)
T PRK14260 7 AIKVKDLSFYYNT---------------------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65 (259)
T ss_pred eEEEEEEEEEECC---------------------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCcc
Confidence 6899999999861 3489999999999999999999999999999999997642 2 4
Q ss_pred ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----
Q 005545 155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR---- 224 (691)
Q Consensus 155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---- 224 (691)
+|+|.++|+++.. ..++.++|++|++.+++ +||+||+.+....+ ....+.+..++++++++.+++.+
T Consensus 66 ~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~ 142 (259)
T PRK14260 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRIS--AKLPQADLDEIVESALKGAALWQEVKD 142 (259)
T ss_pred ceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCcchhhh
Confidence 8999999998742 34568999999999887 89999998765432 11233344556788899998842
Q ss_pred cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM 304 (691)
Q Consensus 225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~ 304 (691)
..++ .++.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++
T Consensus 143 ~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~ 215 (259)
T PRK14260 143 KLNK-----SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRV 215 (259)
T ss_pred HhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHh
Confidence 3333 3457999999999999999999999999999999999999999999999976 689999999975 68899
Q ss_pred CCEEEEec-----CCeEEEecCHhHHH
Q 005545 305 FDKVVVLS-----EGSPIYSGRAAQVM 326 (691)
Q Consensus 305 ~D~v~~L~-----~G~iv~~G~~~~~~ 326 (691)
||++++|+ +|++++.|+++++.
T Consensus 216 ~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 216 SDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred cCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 99999998 59999999999874
No 195
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=358.04 Aligned_cols=225 Identities=22% Similarity=0.349 Sum_probs=188.0
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---- 152 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---- 152 (691)
+..|+++|++++|... .+.+|+|+||+|++||++||+||||||||||+++|+|....
T Consensus 78 ~~~i~~~nls~~y~~~-------------------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~ 138 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-------------------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGT 138 (329)
T ss_pred CceEEEEeeEEEecCC-------------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCC
Confidence 3479999999999621 13589999999999999999999999999999999997642
Q ss_pred CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHHcCCCcc
Q 005545 153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLT-REEKIEQAEMVIMELGLTRC 225 (691)
Q Consensus 153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~ 225 (691)
+.+|+|.++|+++.. .+++.++||+|++.+++ .|++||+.|+.... ... ++...+.++++++.++|.+.
T Consensus 139 p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~ 214 (329)
T PRK14257 139 SHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDE 214 (329)
T ss_pred CCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcch
Confidence 468999999999852 35678999999999885 79999999864321 122 22234457788899888654
Q ss_pred ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~ 305 (691)
.++.++ +....||||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++. .+.++|
T Consensus 215 l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~ 291 (329)
T PRK14257 215 VKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRIS 291 (329)
T ss_pred hhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhC
Confidence 444443 34567999999999999999999999999999999999999999999999976 699999999964 577889
Q ss_pred CEEEEecCCeEEEecCHhHHHH
Q 005545 306 DKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 306 D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
|||++|++|++++.|+++++..
T Consensus 292 Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 292 DETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred CEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999853
No 196
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=345.81 Aligned_cols=222 Identities=24% Similarity=0.368 Sum_probs=182.9
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C---
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-K--- 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~--- 153 (691)
..|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+++|+|+... +
T Consensus 5 ~~i~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~ 63 (253)
T PRK14261 5 IILSTKNLNLWYGE---------------------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63 (253)
T ss_pred ceEEEeeeEEEECC---------------------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCC
Confidence 36999999999861 3589999999999999999999999999999999997532 2
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
.+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+...
T Consensus 64 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~ 140 (253)
T PRK14261 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVK 140 (253)
T ss_pred cceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhH
Confidence 48999999998742 235679999999998874 99999998754321 1123334456788889888853211
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.. +..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|+
T Consensus 141 ~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~ 217 (253)
T PRK14261 141 DRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDY 217 (253)
T ss_pred HHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCE
Confidence 111 123457999999999999999999999999999999999999999999999976 589999999964 57789999
Q ss_pred EEEecCCeEEEecCHhHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~ 326 (691)
+++|++|+++..|+++++.
T Consensus 218 v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 218 TGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEEEECCEEEEcCCHHHHH
Confidence 9999999999999998874
No 197
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=345.06 Aligned_cols=220 Identities=23% Similarity=0.362 Sum_probs=181.3
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC----
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF---- 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~---- 154 (691)
.|+++||+++|.. +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.
T Consensus 4 ~l~~~~l~~~~~~---------------------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~ 61 (251)
T PRK14249 4 KIKIRGVNFFYHK---------------------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGAR 61 (251)
T ss_pred eEEEEEEEEEECC---------------------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCC
Confidence 5889999999861 348999999999999999999999999999999999774 43
Q ss_pred -ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 155 -SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 155 -~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.+....+. ...+++..++++++++.++|.+...
T Consensus 62 ~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~ 138 (251)
T PRK14249 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVK 138 (251)
T ss_pred cccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhh
Confidence 6999999988742 346789999999998875 99999988654321 1112233456777888888753211
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
... +..+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.++|++++ +++|||++||++. .+.+.||+
T Consensus 139 ~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~ 215 (251)
T PRK14249 139 DNL-HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDW 215 (251)
T ss_pred hHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCE
Confidence 111 12345799999999999999999999999999999999999999999999995 5899999999964 57789999
Q ss_pred EEEecCCeEEEecCHhHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~ 326 (691)
+++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 216 TGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEEEeCCeEEEeCCHHHHH
Confidence 9999999999999988874
No 198
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-41 Score=372.71 Aligned_cols=217 Identities=29% Similarity=0.480 Sum_probs=187.7
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
.++.++.+||+|.|+.+ +++++|+|+++++|+.+||+|+||||||||+++|+|+. ++.+
T Consensus 317 ~~~ei~~~~l~~~y~~g--------------------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~-~~~~ 375 (559)
T COG4988 317 PPIEISLENLSFRYPDG--------------------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL-APTQ 375 (559)
T ss_pred CCceeeecceEEecCCC--------------------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC-CCCC
Confidence 46788889999999842 25899999999999999999999999999999999987 4689
Q ss_pred eEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC------Ccc
Q 005545 156 GKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL------TRC 225 (691)
Q Consensus 156 G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~ 225 (691)
|+|.+||++..+ .++++++||+|++.+++. |++||+.++.. ..+++ .+.+++++.|| ++.
T Consensus 376 G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e----~i~~al~~a~l~~~v~~p~G 445 (559)
T COG4988 376 GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDE----EIIAALDQAGLLEFVPKPDG 445 (559)
T ss_pred ceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHH----HHHHHHHHhcHHHhhcCCCc
Confidence 999999988753 689999999999999975 99999987632 23343 34455555555 346
Q ss_pred ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~ 305 (691)
.|+.+|+ ..++|||||+|||++||||+.+++++++||||++||.++.+.|.+.|.+++++ +|+|++||++. ...-+
T Consensus 446 Ldt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~--~~~~~ 521 (559)
T COG4988 446 LDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLE--DAADA 521 (559)
T ss_pred ccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChH--HHhcC
Confidence 6788875 55789999999999999999999999999999999999999999999999985 99999999964 35789
Q ss_pred CEEEEecCCeEEEecCHhHHHH
Q 005545 306 DKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 306 D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
|+|++|++|++++.|.++++.+
T Consensus 522 D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 522 DRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred CEEEEecCCceeccCCHHHHhh
Confidence 9999999999999999999854
No 199
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.9e-41 Score=344.85 Aligned_cols=201 Identities=31% Similarity=0.470 Sum_probs=172.4
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHH
Q 005545 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYA 195 (691)
Q Consensus 116 L~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~ 195 (691)
|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+|.++|+++... ....+|++|++.+++.+||+||+.+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA-QPTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHHH
Confidence 57999999999999999999999999999999987 47799999999987542 22358999999999999999999876
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005545 196 ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275 (691)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~ 275 (691)
.....+ ...+.+..++++++++.+||.+..++.+ ++||||||||++|||+|+.+|++|||||||+|||+.++..
T Consensus 79 ~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 79 VDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred HHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 321111 2334455567889999999987777665 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545 276 IVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 276 i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 325 (691)
+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+..++
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999874 899999999964 57889999999999999988865544
No 200
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2e-40 Score=343.84 Aligned_cols=222 Identities=27% Similarity=0.347 Sum_probs=182.9
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-CCCCce
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL-RGKFSG 156 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~-~~~~~G 156 (691)
..|+++||++.|+. +.+|+|+||++++||++||+|+||||||||+++|+|+. .++.+|
T Consensus 6 ~~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G 64 (252)
T CHL00131 6 PILEIKNLHASVNE---------------------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG 64 (252)
T ss_pred ceEEEEeEEEEeCC---------------------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCc
Confidence 46999999999861 34899999999999999999999999999999999963 246799
Q ss_pred EEEECCEeCCh----hccc-cEEEEccCCCCCCCCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHHcCCC-ccc
Q 005545 157 KITYNGRQFSS----SLKR-KTGFVTQDDVLYPHLTVLETLSYAALLRLP----KKLTREEKIEQAEMVIMELGLT-RCR 226 (691)
Q Consensus 157 ~I~~~G~~~~~----~~~~-~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~ 226 (691)
+|.++|.++.. ..++ .++|++|++.+++.+|+.|++.+....... ......+..++++++++.+|+. ...
T Consensus 65 ~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 144 (252)
T CHL00131 65 DILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFL 144 (252)
T ss_pred eEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhh
Confidence 99999998753 1222 488999999999999999998875431100 0112223345678899999997 345
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc-C
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM-F 305 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~-~ 305 (691)
++.++ .+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +
T Consensus 145 ~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~ 219 (252)
T CHL00131 145 SRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKP 219 (252)
T ss_pred ccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhC
Confidence 55443 249999999999999999999999999999999999999999999999877999999999965 45555 8
Q ss_pred CEEEEecCCeEEEecCHhHH
Q 005545 306 DKVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 306 D~v~~L~~G~iv~~G~~~~~ 325 (691)
|++++|++|++++.|+++.+
T Consensus 220 d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 220 DYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred CEEEEEeCCEEEEecChhhh
Confidence 99999999999999998844
No 201
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=349.13 Aligned_cols=218 Identities=24% Similarity=0.399 Sum_probs=183.1
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--- 152 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--- 152 (691)
.+..|+++||+++|.. +.+|+|+||+|++||+++|+||||||||||+++|+|++.+
T Consensus 36 ~~~~l~i~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~ 94 (285)
T PRK14254 36 GETVIEARDLNVFYGD---------------------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDA 94 (285)
T ss_pred CCceEEEEEEEEEECC---------------------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccC
Confidence 3457999999999851 3589999999999999999999999999999999998642
Q ss_pred -CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 005545 153 -KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR- 224 (691)
Q Consensus 153 -~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~- 224 (691)
+.+|+|.++|+++.. ..++.++|++|++.+++. ||+||+.+....+ .... +..++++++++.+||.+
T Consensus 95 ~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~ 169 (285)
T PRK14254 95 ARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDE 169 (285)
T ss_pred CCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCch
Confidence 579999999988631 346789999999988875 9999998765432 1122 33456889999999853
Q ss_pred ---cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH
Q 005545 225 ---CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRL 301 (691)
Q Consensus 225 ---~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i 301 (691)
..+.. +..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+
T Consensus 170 i~~~~~~~-----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i 242 (285)
T PRK14254 170 VKDQLDSS-----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QA 242 (285)
T ss_pred hHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HH
Confidence 33443 3579999999999999999999999999999999999999999999999874 89999999964 57
Q ss_pred HhcCCEEE-EecCCeEEEecCHhHHH
Q 005545 302 YRMFDKVV-VLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 302 ~~~~D~v~-~L~~G~iv~~G~~~~~~ 326 (691)
.+++|+++ +|++|++++.|+++++.
T Consensus 243 ~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 243 ARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 78999975 67999999999988764
No 202
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=348.65 Aligned_cols=219 Identities=21% Similarity=0.367 Sum_probs=181.5
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G-- 152 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~-- 152 (691)
+..|+++||++.|+. +.+|+|+|++|++||+++|+|+||||||||+++|+|++. +
T Consensus 22 ~~~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~ 80 (271)
T PRK14238 22 KVVFDTQNLNLWYGE---------------------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSV 80 (271)
T ss_pred ceEEEEeeeEEEECC---------------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCC
Confidence 347999999999862 248999999999999999999999999999999999764 2
Q ss_pred CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC---
Q 005545 153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT--- 223 (691)
Q Consensus 153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--- 223 (691)
+++|+|.++|+++.. ..++.++|++|++.+++ .||+||+.++...+ ....+....+.+.+.++.+++.
T Consensus 81 ~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l 157 (271)
T PRK14238 81 KTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDEL 157 (271)
T ss_pred CCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchH
Confidence 579999999998731 34668999999998887 59999998865322 1112223344567777777543
Q ss_pred -ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHH
Q 005545 224 -RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLY 302 (691)
Q Consensus 224 -~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~ 302 (691)
+..+. .++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.
T Consensus 158 ~~~~~~-----~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~ 230 (271)
T PRK14238 158 KDRLHD-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAA 230 (271)
T ss_pred HHHHhc-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHH
Confidence 22333 3457999999999999999999999999999999999999999999999976 799999999964 577
Q ss_pred hcCCEEEEecCCeEEEecCHhHHH
Q 005545 303 RMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 303 ~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
++||++++|++|++++.|+++++.
T Consensus 231 ~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 231 RISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHH
Confidence 899999999999999999988773
No 203
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=343.68 Aligned_cols=219 Identities=26% Similarity=0.367 Sum_probs=181.5
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CC---
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GK--- 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~--- 153 (691)
++|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+++|+|+.. .+
T Consensus 4 ~~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~ 62 (252)
T PRK14255 4 KIITSSDVHLFYGK---------------------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62 (252)
T ss_pred ceEEEEeEEEEECC---------------------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCC
Confidence 46899999999861 358999999999999999999999999999999999753 13
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR--- 224 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--- 224 (691)
.+|+|.++|+++.. ..++.++|++|++.+++ .||+||+.+....+. ....+...+++.+.++.+++..
T Consensus 63 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~ 139 (252)
T PRK14255 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVK 139 (252)
T ss_pred cccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchh
Confidence 48999999998731 34568999999998887 699999987653321 1122223345677888887642
Q ss_pred -cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545 225 -CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 225 -~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~ 303 (691)
..+. .++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+
T Consensus 140 ~~~~~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~ 212 (252)
T PRK14255 140 DHLHE-----SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASR 212 (252)
T ss_pred hHHhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHH
Confidence 2333 3357999999999999999999999999999999999999999999999976 589999999964 5778
Q ss_pred cCCEEEEecCCeEEEecCHhHHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
.+|++++|++|+++..|++.++..
T Consensus 213 ~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 213 ISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred hCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999888743
No 204
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=345.67 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=184.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC----C
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK----F 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~----~ 154 (691)
.|+++||+++|.. +.+|+|+||++++||+++|+|+||||||||+++|+|+.++. .
T Consensus 7 ~l~~~nl~~~~~~---------------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~ 65 (261)
T PRK14258 7 AIKVNNLSFYYDT---------------------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRV 65 (261)
T ss_pred eEEEeeEEEEeCC---------------------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccc
Confidence 5899999999851 24899999999999999999999999999999999987421 3
Q ss_pred ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545 155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228 (691)
Q Consensus 155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 228 (691)
+|+|.++|+++.. ..++.++|++|++.+++ +|++||+.+..... ...+..+..+++.++++.+++.+..+.
T Consensus 66 ~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 142 (261)
T PRK14258 66 EGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIV--GWRPKLEIDDIVESALKDADLWDEIKH 142 (261)
T ss_pred cceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchhhh
Confidence 7999999988631 34667999999998888 89999998764322 111233444577889999998542211
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~ 307 (691)
.. +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++ .++.++||+
T Consensus 143 ~~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~ 220 (261)
T PRK14258 143 KI-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDF 220 (261)
T ss_pred Hh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCE
Confidence 11 123457999999999999999999999999999999999999999999999975 589999999996 468899999
Q ss_pred EEEecC-----CeEEEecCHhHHHH
Q 005545 308 VVVLSE-----GSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~-----G~iv~~G~~~~~~~ 327 (691)
+++|++ |++++.|+++++.+
T Consensus 221 i~~l~~~~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 221 TAFFKGNENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred EEEEccCCCcCceEEEeCCHHHHHh
Confidence 999999 99999999999844
No 205
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.6e-41 Score=380.60 Aligned_cols=213 Identities=25% Similarity=0.439 Sum_probs=187.3
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|.. +.+|+|+||++++||+++|+||||||||||||+|+|++ ++.+|+|
T Consensus 11 ~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i 68 (510)
T PRK15439 11 LLCARSISKQYSG---------------------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV-PPDSGTL 68 (510)
T ss_pred eEEEEeEEEEeCC---------------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence 6999999999861 35999999999999999999999999999999999987 4779999
Q ss_pred EECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|+++.. . .++.+|||+|++.+++.+||+||+.+... . ..+..++++++++.+||.+..++.++
T Consensus 69 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~----~---~~~~~~~~~~~l~~~~l~~~~~~~~~-- 139 (510)
T PRK15439 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP----K---RQASMQKMKQLLAALGCQLDLDSSAG-- 139 (510)
T ss_pred EECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc----c---chHHHHHHHHHHHHcCCCccccCChh--
Confidence 999998743 1 23469999999999999999999987531 1 12334678899999999887777664
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++
T Consensus 140 ---~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~ 215 (510)
T PRK15439 140 ---SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD 215 (510)
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999999888999999999964 57789999999999
Q ss_pred CeEEEecCHhHHH
Q 005545 314 GSPIYSGRAAQVM 326 (691)
Q Consensus 314 G~iv~~G~~~~~~ 326 (691)
|++++.|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (510)
T PRK15439 216 GTIALSGKTADLS 228 (510)
T ss_pred CEEEEecChHHcC
Confidence 9999999987653
No 206
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-41 Score=320.40 Aligned_cols=212 Identities=33% Similarity=0.495 Sum_probs=184.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+.++++..+.... +...||++|++.|++||.+||+|||||||||||-+|+|+. .+++|+|
T Consensus 6 ii~~~~l~ktvg~~~-----------------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-~~ssGeV 67 (228)
T COG4181 6 IIEVHHLSKTVGQGE-----------------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-DPSSGEV 67 (228)
T ss_pred eeehhhhhhhhcCCC-----------------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-CCCCceE
Confidence 578888888876432 2457999999999999999999999999999999999965 5789999
Q ss_pred EECCEeCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545 159 TYNGRQFSS-------SL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230 (691)
Q Consensus 159 ~~~G~~~~~-------~~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 230 (691)
.+.|+++.+ .+ .+.+|+|||...+.|+||..||+...+.++- .+..+....+.+.|+.+||.+..+.+.
T Consensus 68 ~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g---e~~~~~~~~A~~lL~~vGLg~Rl~HyP 144 (228)
T COG4181 68 RLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---ESSADSRAGAKALLEAVGLGKRLTHYP 144 (228)
T ss_pred EEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC---CccccHHHHHHHHHHHhCcccccccCc
Confidence 999999853 23 3589999999999999999999998887752 233444567889999999998776554
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEE
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
.+|||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++||||. +...|||.+
T Consensus 145 -----~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~ 217 (228)
T COG4181 145 -----AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQL 217 (228)
T ss_pred -----cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhhee
Confidence 57999999999999999999999999999999999999999999999986 5999999999974 567899999
Q ss_pred EecCCeEEE
Q 005545 310 VLSEGSPIY 318 (691)
Q Consensus 310 ~L~~G~iv~ 318 (691)
-|..|+++.
T Consensus 218 r~~~G~l~~ 226 (228)
T COG4181 218 RLRSGRLVE 226 (228)
T ss_pred eeecceecc
Confidence 999999875
No 207
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=7.7e-41 Score=336.29 Aligned_cols=188 Identities=30% Similarity=0.474 Sum_probs=163.7
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCC---h-----hccccEEEEccCCCCCC
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS---S-----SLKRKTGFVTQDDVLYP 184 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~---~-----~~~~~igyv~Q~~~l~~ 184 (691)
+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.++|+++. . ..++.++|++|++.+++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 35999999999999999999999999999999999977 477999999999853 1 23568999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005545 185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEP 264 (691)
Q Consensus 185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP 264 (691)
.+|++||+.+..... .....+..++++++++.+||.+..++.+ ++||||||||++|||+|+.+|++|+||||
T Consensus 90 ~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDEP 161 (206)
T TIGR03608 90 NETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADEP 161 (206)
T ss_pred CCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999865432 2234445567889999999987777665 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 265 TSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 265 tsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
|+|||+.++..+.+.|++++++|+|||++||++. . .+.||++++|
T Consensus 162 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 162 TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 9999999999999999999877999999999974 3 4689999875
No 208
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.6e-41 Score=391.14 Aligned_cols=217 Identities=34% Similarity=0.530 Sum_probs=186.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
-.|+|+||+|.|+. ++.+|+|+||++++||.+||+||||||||||+++|.|.+ .+.+|+
T Consensus 327 ~~I~f~~vsf~y~~--------------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-~~~~G~ 385 (567)
T COG1132 327 GSIEFENVSFSYPG--------------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGE 385 (567)
T ss_pred CeEEEEEEEEEcCC--------------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCe
Confidence 34999999999983 246999999999999999999999999999999999976 467999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccc
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-----EMVIMELGLTRCRNS 228 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~ 228 (691)
|.+||+++.. .+|+.++||+||+.+|. -||+||+.++.. +.++++..+.+ .+.++. +++..||
T Consensus 386 I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~--lp~g~dt 457 (567)
T COG1132 386 ILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIAN--LPDGYDT 457 (567)
T ss_pred EEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHh--Ccccccc
Confidence 9999999864 57899999999999997 799999998742 23444443333 333443 4667899
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
.+|+ ....||||||||++||||++.+|++|+||||||+||+.+...+.+.++++. +++|+|+++|+++. + +.+|+|
T Consensus 458 ~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~I 533 (567)
T COG1132 458 IVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRI 533 (567)
T ss_pred eecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEE
Confidence 9994 446799999999999999999999999999999999999999999999887 56899999999854 4 559999
Q ss_pred EEecCCeEEEecCHhHHHH
Q 005545 309 VVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~~ 327 (691)
++|++|++++.|++++++.
T Consensus 534 iVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 534 IVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEECCEEEEecCHHHHHH
Confidence 9999999999999999976
No 209
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-41 Score=369.30 Aligned_cols=213 Identities=35% Similarity=0.551 Sum_probs=183.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+|+||+++|..+ ++||+++||+|++||-+||+|+|||||||++|+|.+... .+|+|
T Consensus 351 ~I~F~dV~f~y~~k--------------------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I 408 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK--------------------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSI 408 (591)
T ss_pred cEEEEeeEEEeCCC--------------------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcE
Confidence 49999999999732 359999999999999999999999999999999998763 69999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 227 (691)
++||+++.+ .+|+.|||||||..||. -||.+|+.|+.. ..+.++ |.++.++.| +++...
T Consensus 409 ~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~ 478 (591)
T KOG0057|consen 409 LIDGQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQ 478 (591)
T ss_pred EECCeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccch
Confidence 999999864 57899999999999995 599999999753 233333 333334433 356778
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+ ....|||||||||+||||++.||+|+++|||||.||+.+..++++.+.+. ..|+|+|++.|+.+ ..+-||+
T Consensus 479 T~VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~Dk 554 (591)
T KOG0057|consen 479 TLVGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDK 554 (591)
T ss_pred hhHhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCE
Confidence 88986 33569999999999999999999999999999999999999999999994 35899999999953 5689999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++.+.|+++|++.
T Consensus 555 I~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 555 IIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEEEECCeeEEeccHHHHhh
Confidence 99999999999999999976
No 210
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.6e-40 Score=347.94 Aligned_cols=228 Identities=25% Similarity=0.383 Sum_probs=187.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||++.|..... .+ ...++.+|+|+||+|++||+++|+||||||||||+++|+|+. .+.+|+|
T Consensus 3 ~l~~~nl~~~~~~~~~-----------~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~sG~i 69 (268)
T PRK10419 3 LLNVSGLSHHYAHGGL-----------SG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-SPSQGNV 69 (268)
T ss_pred eEEEeceEEEecCCcc-----------cc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence 5899999999962100 00 001246999999999999999999999999999999999976 4779999
Q ss_pred EECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 005545 159 TYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNS 228 (691)
Q Consensus 159 ~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 228 (691)
.++|+++.. ..++.++|++|++ .+++..|+.|++.+..... ......+..++++++++.+|+. ...++
T Consensus 70 ~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 70 SWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred EECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhC
Confidence 999998742 2456899999997 4677899999987653211 1223444556789999999996 45555
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~ 307 (691)
.+ +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.++||+
T Consensus 148 ~~-----~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~ 221 (268)
T PRK10419 148 RP-----PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQR 221 (268)
T ss_pred CC-----ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCE
Confidence 44 469999999999999999999999999999999999999999999999875 899999999964 57789999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++..
T Consensus 222 i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 222 VMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred EEEEECCEEeeeCChhhccC
Confidence 99999999999999988653
No 211
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.7e-40 Score=337.64 Aligned_cols=210 Identities=29% Similarity=0.481 Sum_probs=180.3
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||++.|..+. +.+.+|+|+||++++||+++|+|+||||||||+++|+|.+ ++.+|+|.
T Consensus 2 l~~~~l~~~~~~~~-----------------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-~~~~G~i~ 63 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-----------------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SVQEGSLK 63 (220)
T ss_pred EEEEEEEEEccCCC-----------------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEE
Confidence 68999999885210 1246999999999999999999999999999999999976 57899999
Q ss_pred ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
++|+++.. ..++.++|++|++.+++.+|+.||+.++.... .....++..++++++++.+||.+..++.+
T Consensus 64 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 139 (220)
T TIGR02982 64 VLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDHLDYYP-- 139 (220)
T ss_pred ECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCChhhhhcCh--
Confidence 99998742 24578999999999999999999999865422 11334555567899999999987777655
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. +.++||++++|
T Consensus 140 ---~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l 214 (220)
T TIGR02982 140 ---HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM 214 (220)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence 57999999999999999999999999999999999999999999999986 5899999999974 45899999999
Q ss_pred cCCeE
Q 005545 312 SEGSP 316 (691)
Q Consensus 312 ~~G~i 316 (691)
++|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
No 212
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.4e-40 Score=332.06 Aligned_cols=191 Identities=53% Similarity=0.847 Sum_probs=166.1
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCce
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSG 156 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G 156 (691)
+.|+++||+++|+...+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++.+|
T Consensus 2 ~~l~~~~ls~~~~~~~~---------------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G 66 (194)
T cd03213 2 VTLSFRNLTVTVKSSPS---------------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG 66 (194)
T ss_pred cEEEEEeeEEEEecCCC---------------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence 46899999999963100 012459999999999999999999999999999999999761 46799
Q ss_pred EEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545 157 KITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235 (691)
Q Consensus 157 ~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 235 (691)
+|.++|+++.. ..++.++|++|++.+++.+|++||+.+.....
T Consensus 67 ~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~------------------------------------ 110 (194)
T cd03213 67 EVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR------------------------------------ 110 (194)
T ss_pred EEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc------------------------------------
Confidence 99999998864 45678999999999999999999997642110
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++|+
T Consensus 111 -~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 -GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 4899999999999999999999999999999999999999999999987799999999998656778999999999999
Q ss_pred EEEec
Q 005545 316 PIYSG 320 (691)
Q Consensus 316 iv~~G 320 (691)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98764
No 213
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.8e-41 Score=397.19 Aligned_cols=212 Identities=32% Similarity=0.480 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+|+||+|+|+.. ++.+|+|+|++|++||.+||+|+||||||||+|+|+|++ .|.+|+|
T Consensus 451 ~I~~~nvsf~Y~~~-------------------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I 510 (686)
T TIGR03797 451 AIEVDRVTFRYRPD-------------------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSV 510 (686)
T ss_pred eEEEEEEEEEcCCC-------------------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence 59999999999631 135899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 227 (691)
.+||+++.+ .+|+.+|||+||+.+|+ -|++|||.++. + .+.+ ++.++++..|+ ++..|
T Consensus 511 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~d 579 (686)
T TIGR03797 511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMH 579 (686)
T ss_pred EECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhcccccc
Confidence 999999863 57889999999999996 49999998752 1 2333 34445555554 45678
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+. ...||||||||++|||||+++|++|+||||||+||+.+++++.+.|+++ ++|+|++||+++ ..+.+|+
T Consensus 580 t~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~ 653 (686)
T TIGR03797 580 TVISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADR 653 (686)
T ss_pred ccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCE
Confidence 888753 4679999999999999999999999999999999999999999999887 589999999974 3578999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++++.|+++++++
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999864
No 214
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.4e-40 Score=343.53 Aligned_cols=218 Identities=29% Similarity=0.420 Sum_probs=181.0
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||++.|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus 3 ~l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i 60 (253)
T TIGR02323 3 LLQVSGLSKSYGG---------------------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-APDHGTA 60 (253)
T ss_pred eEEEeeeEEEeCC---------------------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence 5899999999862 24899999999999999999999999999999999976 4679999
Q ss_pred EECCEe-----CCh---h-----ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005545 159 TYNGRQ-----FSS---S-----LKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223 (691)
Q Consensus 159 ~~~G~~-----~~~---~-----~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 223 (691)
.++|++ +.. . .++.++|++|++. +++.+|+.||+.+.... .. .....+..++++++++.+|+.
T Consensus 61 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~~~~~l~~l~l~ 138 (253)
T TIGR02323 61 TYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA-IG-ARHYGNIRAAAHDWLEEVEID 138 (253)
T ss_pred EEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHH-hc-ccchHHHHHHHHHHHHHcCCC
Confidence 999976 431 1 2357999999974 45678999998754321 11 111123346788999999996
Q ss_pred c-cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHH
Q 005545 224 R-CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRL 301 (691)
Q Consensus 224 ~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i 301 (691)
+ ..++.+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+
T Consensus 139 ~~~~~~~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~ 212 (253)
T TIGR02323 139 PTRIDDLP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VA 212 (253)
T ss_pred hhhhhcCc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence 3 555544 579999999999999999999999999999999999999999999998764 899999999964 57
Q ss_pred HhcCCEEEEecCCeEEEecCHhHHH
Q 005545 302 YRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 302 ~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
.+.+|++++|++|++++.|+++++.
T Consensus 213 ~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 213 RLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred HHhcCEEEEEECCEEEEECCHHHHh
Confidence 7899999999999999999988774
No 215
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=342.55 Aligned_cols=223 Identities=22% Similarity=0.375 Sum_probs=184.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--C
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G--K 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~--~ 153 (691)
+.|+++||++.|.. +.+|+|+|++|++||+++|+||||||||||+++|+|+.. + +
T Consensus 2 ~~l~~~~v~~~~~~---------------------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~ 60 (250)
T PRK14266 2 YRIEVENLNTYFDD---------------------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60 (250)
T ss_pred cEEEEEeEEEEeCC---------------------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCC
Confidence 35889999998851 358999999999999999999999999999999999753 2 3
Q ss_pred CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
++|+|.++|+++.. ..++.++|++|++.+++. |+.||+.+..... .....+...+++.++++.+||.+...
T Consensus 61 ~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~ 137 (250)
T PRK14266 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVK 137 (250)
T ss_pred CccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHH
Confidence 79999999998742 346789999999998875 9999998764321 11223344567888999999854221
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
... +...+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++...+|+
T Consensus 138 ~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~ 214 (250)
T PRK14266 138 DKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKY 214 (250)
T ss_pred HHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCE
Confidence 111 223467999999999999999999999999999999999999999999999965 789999999964 57899999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++..
T Consensus 215 i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 215 TSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred EEEEECCeEEEeCCHHHHHh
Confidence 99999999999999988743
No 216
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.3e-40 Score=340.81 Aligned_cols=203 Identities=26% Similarity=0.380 Sum_probs=172.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---CCceEEEECCEeCCh-hc-cccEEEEccCCC--CCCCCC
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---KFSGKITYNGRQFSS-SL-KRKTGFVTQDDV--LYPHLT 187 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---~~~G~I~~~G~~~~~-~~-~~~igyv~Q~~~--l~~~lT 187 (691)
+|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|+++.. .. ++.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999998743 179999999998754 22 357999999984 567789
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC---ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005545 188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT---RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEP 264 (691)
Q Consensus 188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP 264 (691)
++|++.+..... .....+..++++++++.++|. +..++.+ +.|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999997754322 112233456788999999997 3445444 56999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545 265 TSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 265 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
|+|||+.++..+.+.|++++++ |+|||+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999874 899999999965 577899999999999999999988874
No 217
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-41 Score=344.21 Aligned_cols=215 Identities=33% Similarity=0.506 Sum_probs=175.1
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+.. ++.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 i~~~~l~~~~~~~-------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~ 60 (234)
T cd03251 1 VEFKNVTFRYPGD-------------------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY-DVDSGRIL 60 (234)
T ss_pred CEEEEEEEEeCCC-------------------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-cCCCCEEE
Confidence 4689999988621 125899999999999999999999999999999999987 47799999
Q ss_pred ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccc
Q 005545 160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI-----EQAEMVIMEL--GLTRCRNS 228 (691)
Q Consensus 160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~ 228 (691)
++|+++.. ..++.++|++|++.+++ .||+||+.+.... ....+.. ..+++.++.+ ++....+.
T Consensus 61 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 134 (234)
T cd03251 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE 134 (234)
T ss_pred ECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc
Confidence 99988742 34668999999998886 6999999875321 1111111 1234555555 55544443
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
. +..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++. .+. .||++
T Consensus 135 ~-----~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v 206 (234)
T cd03251 135 R-----GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRI 206 (234)
T ss_pred C-----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEE
Confidence 3 357999999999999999999999999999999999999999999999975 899999999975 454 49999
Q ss_pred EEecCCeEEEecCHhHHHHH
Q 005545 309 VVLSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~~~ 328 (691)
++|++|++++.|+.+++.+.
T Consensus 207 ~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 207 VVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEecCCeEeeeCCHHHHHHc
Confidence 99999999999998887554
No 218
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.5e-41 Score=388.51 Aligned_cols=216 Identities=27% Similarity=0.447 Sum_probs=184.1
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+|+|+.. .+.+|+|+|++|++||.+||+|+||||||||+|+|+|++ +|.+|+|
T Consensus 341 ~i~~~~vsf~y~~~-------------------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~p~~G~I 400 (582)
T PRK11176 341 DIEFRNVTFTYPGK-------------------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-DIDEGEI 400 (582)
T ss_pred eEEEEEEEEecCCC-------------------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCceE
Confidence 59999999999732 135999999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 227 (691)
.+||+++.+ .+++.++||+||+.+|+ -|++|||.++. +...+++ +++++++..| |++..|
T Consensus 401 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gld 471 (582)
T PRK11176 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLD 471 (582)
T ss_pred EECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccC
Confidence 999999864 56789999999999996 59999998752 2222333 3444444444 456678
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+. .+.||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.||+
T Consensus 472 t~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~ 547 (582)
T PRK11176 472 TVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADE 547 (582)
T ss_pred ceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCE
Confidence 999863 467999999999999999999999999999999999999999999999854 699999999974 4678999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++++.|+++++.+
T Consensus 548 Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 548 ILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999864
No 219
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-41 Score=400.29 Aligned_cols=220 Identities=33% Similarity=0.543 Sum_probs=187.2
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
...|+|+||+|+|+... +..||+|+|+.|++|+.+||+|||||||||++++|.+.+ .|.+|
T Consensus 348 ~g~ief~nV~FsYPsRp------------------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy-dP~~G 408 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRP------------------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY-DPTSG 408 (1228)
T ss_pred ccceEEEEEEecCCCCC------------------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCc
Confidence 35799999999998431 356999999999999999999999999999999999866 57899
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCCCcccc
Q 005545 157 KITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-----EMVIMELGLTRCRN 227 (691)
Q Consensus 157 ~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~ 227 (691)
+|++||.++.. .+|.+||.|.|+|.+| ..||+||+.|+.. +.++++..+.. .+.+. .|++..+
T Consensus 409 ~V~idG~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~~-----dat~~~i~~a~k~ana~~fi~--~lp~g~~ 480 (1228)
T KOG0055|consen 409 EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGKP-----DATREEIEEAAKAANAHDFIL--KLPDGYD 480 (1228)
T ss_pred eEEEcCccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCCC-----cccHHHHHHHHHHccHHHHHH--hhHHhhc
Confidence 99999999864 5788999999999888 5799999998632 33344333322 22233 4578899
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+..+ +||||||||++|||||+.+|+|||||||||+||+.+...+.+.|.+..+ |+|.|+++|+.+. + +.+|+
T Consensus 481 T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-grTTivVaHRLSt-I-rnaD~ 556 (1228)
T KOG0055|consen 481 TLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK-GRTTIVVAHRLST-I-RNADK 556 (1228)
T ss_pred ccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-CCeEEEEeeehhh-h-hccCE
Confidence 99997433 3999999999999999999999999999999999999999999988765 8999999999754 5 55999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++|+++
T Consensus 557 I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 557 IAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EEEEECCEEEEecCHHHHHh
Confidence 99999999999999999986
No 220
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-40 Score=342.97 Aligned_cols=223 Identities=21% Similarity=0.358 Sum_probs=186.0
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--- 152 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--- 152 (691)
.|..+.++++++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|++.+
T Consensus 5 ~~~~~~~~~~~~~~~---------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~ 63 (261)
T PRK14263 5 APIVMDCKLDKIFYG---------------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKG 63 (261)
T ss_pred CCceEEEEeEEEEeC---------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccC
Confidence 466788999988875 24599999999999999999999999999999999998743
Q ss_pred -CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545 153 -KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225 (691)
Q Consensus 153 -~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 225 (691)
+.+|+|.++|+++.. ..++.++|++|++.++ .+|++||+.+....+. . ..+..++++++++.++|.+.
T Consensus 64 ~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~ 138 (261)
T PRK14263 64 FRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDE 138 (261)
T ss_pred CCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchh
Confidence 369999999998742 3456799999999888 5999999988754321 1 22334578889999998643
Q ss_pred ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~ 305 (691)
.+.... ...+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++|
T Consensus 139 i~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~ 215 (261)
T PRK14263 139 VKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVA 215 (261)
T ss_pred hhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhC
Confidence 322221 24467999999999999999999999999999999999999999999999964 789999999975 577899
Q ss_pred CEEEEec--------CCeEEEecCHhHHHH
Q 005545 306 DKVVVLS--------EGSPIYSGRAAQVMD 327 (691)
Q Consensus 306 D~v~~L~--------~G~iv~~G~~~~~~~ 327 (691)
|++++|+ +|++++.|+++++.+
T Consensus 216 d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 216 DTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CEEEEEecccccccCCceEEEeCCHHHHHh
Confidence 9999995 899999999988753
No 221
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=347.13 Aligned_cols=220 Identities=25% Similarity=0.397 Sum_probs=181.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|+. ++.+|+|+|++|++||+++|+||||||||||+|+|+|++ ++.+|+
T Consensus 5 ~~l~~~~l~~~~~~--------------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~ 63 (272)
T PRK15056 5 AGIVVNDVTVTWRN--------------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV-RLASGK 63 (272)
T ss_pred ceEEEEeEEEEecC--------------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceE
Confidence 36999999999951 135899999999999999999999999999999999977 477999
Q ss_pred EEECCEeCChhcc-ccEEEEccCCCCC--CCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 158 ITYNGRQFSSSLK-RKTGFVTQDDVLY--PHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 158 I~~~G~~~~~~~~-~~igyv~Q~~~l~--~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
|.++|+++....+ +.++|++|++.+. ...+++|++.++...... ......+..++++++++.+||.+..++.++
T Consensus 64 i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-- 141 (272)
T PRK15056 64 ISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-- 141 (272)
T ss_pred EEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc--
Confidence 9999998754333 4699999997652 235788988653211000 011122334567889999999887777664
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+++++ +
T Consensus 142 ---~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~ 216 (272)
T PRK15056 142 ---ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K 216 (272)
T ss_pred ---cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C
Confidence 69999999999999999999999999999999999999999999999877999999999964 578899999877 8
Q ss_pred CeEEEecCHhHH
Q 005545 314 GSPIYSGRAAQV 325 (691)
Q Consensus 314 G~iv~~G~~~~~ 325 (691)
|++++.|+++++
T Consensus 217 G~i~~~g~~~~~ 228 (272)
T PRK15056 217 GTVLASGPTETT 228 (272)
T ss_pred CEEEeecCHHhc
Confidence 999999998876
No 222
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=6.6e-41 Score=344.47 Aligned_cols=216 Identities=31% Similarity=0.495 Sum_probs=172.0
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|+++.|... .++.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~i~~l~~~~~~~------------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~ 61 (238)
T cd03249 1 IEFKNVSFRYPSR------------------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEIL 61 (238)
T ss_pred CeEEEEEEecCCC------------------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-CCCCCEEE
Confidence 4689999988621 1135899999999999999999999999999999999977 47799999
Q ss_pred ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccc
Q 005545 160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIE-----QAEMVIMEL--GLTRCRNS 228 (691)
Q Consensus 160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~ 228 (691)
++|.++.. ..++.++|++|++.+++ .||+||+.+....+ ..++..+ .+.+.++.+ ++....+.
T Consensus 62 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (238)
T cd03249 62 LDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE 135 (238)
T ss_pred ECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc
Confidence 99988742 23567999999998886 69999998743211 1111111 112223333 33322332
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||++. ++ ..||++
T Consensus 136 -----~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v 207 (238)
T cd03249 136 -----RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLI 207 (238)
T ss_pred -----CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEE
Confidence 346799999999999999999999999999999999999999999999997 7899999999975 45 489999
Q ss_pred EEecCCeEEEecCHhHHHHH
Q 005545 309 VVLSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~~~ 328 (691)
++|++|++++.|+.+++.++
T Consensus 208 ~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 208 AVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEECCEEEEeCCHHHHhhc
Confidence 99999999999998887654
No 223
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.9e-40 Score=376.60 Aligned_cols=218 Identities=23% Similarity=0.420 Sum_probs=185.2
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCceEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-KFSGKI 158 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~~~G~I 158 (691)
|+++||+++|. .+.+|+|+||++++||+++|+||||||||||+|+|+|+.++ +.+|+|
T Consensus 2 l~i~~l~~~~~---------------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i 60 (500)
T TIGR02633 2 LEMKGIVKTFG---------------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60 (500)
T ss_pred EEEEeEEEEeC---------------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE
Confidence 78999999985 13589999999999999999999999999999999997743 369999
Q ss_pred EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-ccccc
Q 005545 159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCR-NSVVG 231 (691)
Q Consensus 159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg 231 (691)
.++|+++.. ..++.++||+|++.+++.+||+||+.++....... ....++..++++++++.+||.+.. ++.+
T Consensus 61 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 139 (500)
T TIGR02633 61 YWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV- 139 (500)
T ss_pred EECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-
Confidence 999998753 13467999999999999999999998764322111 123344456788999999997654 3444
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|
T Consensus 140 ----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l 214 (500)
T TIGR02633 140 ----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVI 214 (500)
T ss_pred ----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999999888999999999964 578899999999
Q ss_pred cCCeEEEecCHhH
Q 005545 312 SEGSPIYSGRAAQ 324 (691)
Q Consensus 312 ~~G~iv~~G~~~~ 324 (691)
++|++++.|++++
T Consensus 215 ~~G~i~~~~~~~~ 227 (500)
T TIGR02633 215 RDGQHVATKDMST 227 (500)
T ss_pred eCCeEeeecCccc
Confidence 9999999987654
No 224
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.1e-40 Score=340.52 Aligned_cols=228 Identities=30% Similarity=0.388 Sum_probs=182.4
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCceEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGKI 158 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G~I 158 (691)
|+++||++.|+. +.+|+|+|++|++||+++|+||||||||||+++|+|+.. ++.+|+|
T Consensus 2 i~~~nl~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i 60 (248)
T PRK09580 2 LSIKDLHVSVED---------------------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60 (248)
T ss_pred eEEEEEEEEeCC---------------------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE
Confidence 789999999861 358999999999999999999999999999999999752 4779999
Q ss_pred EECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHh-hcC--CC-CCCHHHHHHHHHHHHHHcCCC-ccccc
Q 005545 159 TYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAAL-LRL--PK-KLTREEKIEQAEMVIMELGLT-RCRNS 228 (691)
Q Consensus 159 ~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~-~~~--~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~ 228 (691)
.++|+++.. . .++.++|++|++.+++.+|+.+++.+... .+. .. .....+..+++++.++.+++. +..++
T Consensus 61 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 140 (248)
T PRK09580 61 EFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTR 140 (248)
T ss_pred EECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhccc
Confidence 999987642 1 23569999999998888888777654321 110 00 011223345678899999995 34444
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc-CCE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM-FDK 307 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~-~D~ 307 (691)
.+. +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|+
T Consensus 141 ~~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~ 215 (248)
T PRK09580 141 SVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDY 215 (248)
T ss_pred CCC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCE
Confidence 332 369999999999999999999999999999999999999999999999877899999999965 45555 899
Q ss_pred EEEecCCeEEEecCHhHHHHHhhhcCC
Q 005545 308 VVVLSEGSPIYSGRAAQVMDYFGSIGY 334 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~~f~~~g~ 334 (691)
+++|++|++++.|+++.+ ..+...++
T Consensus 216 i~~l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 216 VHVLYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EEEEECCeEEEeCCHHHH-HHHHhcCC
Confidence 999999999999998865 34444444
No 225
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=382.98 Aligned_cols=230 Identities=27% Similarity=0.394 Sum_probs=191.4
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||++.|....+ .+ ....+.+.+|+||||+|++||+++|+|+||||||||+|+|+|++ ++.+|+
T Consensus 312 ~~L~~~~l~~~y~~~~~--~~--------~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~-~p~~G~ 380 (623)
T PRK10261 312 PILQVRNLVTRFPLRSG--LL--------NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV-ESQGGE 380 (623)
T ss_pred ceEEEeeeEEEEcCCCc--cc--------cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCcE
Confidence 46999999999963110 00 00001246999999999999999999999999999999999987 467999
Q ss_pred EEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545 158 ITYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN 227 (691)
Q Consensus 158 I~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 227 (691)
|.++|+++.. ..++.++||+|++ .+++.+||.|++.+....+ ....+++..++++++++.+||. +..+
T Consensus 381 I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~ 458 (623)
T PRK10261 381 IIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAW 458 (623)
T ss_pred EEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhh
Confidence 9999998742 2356899999997 5889999999998764332 1112344556789999999996 4566
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCC
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D 306 (691)
+.+ .+|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||
T Consensus 459 ~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~d 532 (623)
T PRK10261 459 RYP-----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISH 532 (623)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCC
Confidence 655 479999999999999999999999999999999999999999999999875 899999999964 6789999
Q ss_pred EEEEecCCeEEEecCHhHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~ 326 (691)
+|++|++|++++.|+++++.
T Consensus 533 ri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 533 RVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EEEEEECCEEEEecCHHHHh
Confidence 99999999999999999885
No 226
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.6e-40 Score=384.73 Aligned_cols=213 Identities=25% Similarity=0.396 Sum_probs=184.2
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++|++|+|+. ++.+|+|+|+++++||.+||+|+||||||||+|+|+|++ +|.+|+|
T Consensus 340 ~i~~~~v~f~y~~--------------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-~p~~G~I 398 (592)
T PRK10790 340 RIDIDNVSFAYRD--------------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-PLTEGEI 398 (592)
T ss_pred eEEEEEEEEEeCC--------------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceE
Confidence 5899999999962 124899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 227 (691)
.+||.++.+ .+++.++||+||+.+|+. |++|||.++. ..++ ++++++++.+|+ ++..|
T Consensus 399 ~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gld 467 (592)
T PRK10790 399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLY 467 (592)
T ss_pred EECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhcccccc
Confidence 999999864 578899999999999975 9999998752 1222 245556666664 45568
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+ ....||||||||++|||||+.+|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ..+.||+
T Consensus 468 t~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ 543 (592)
T PRK10790 468 TPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADT 543 (592)
T ss_pred ccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCE
Confidence 88876 3466999999999999999999999999999999999999999999999875 699999999974 4578999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++++.|+++++++
T Consensus 544 ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 544 ILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999864
No 227
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=340.86 Aligned_cols=215 Identities=33% Similarity=0.492 Sum_probs=172.9
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++|++++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|++ ++.+|+|
T Consensus 2 ~l~~~~l~~~~~~--------------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i 60 (229)
T cd03254 2 EIEFENVNFSYDE--------------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-DPQKGQI 60 (229)
T ss_pred eEEEEEEEEecCC--------------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEE
Confidence 4789999998851 124899999999999999999999999999999999987 4679999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc------
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS------ 228 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~------ 228 (691)
.++|.++.. ..++.++|++|++.+++. ||+||+.+... .... +++++.++.+++.+..+.
T Consensus 61 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~ 130 (229)
T cd03254 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYD 130 (229)
T ss_pred EECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCccccc
Confidence 999988742 346679999999988875 99999976421 1111 123333444444322211
Q ss_pred -cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 229 -VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 229 -~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
..+ ..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||++. .+ ..||+
T Consensus 131 ~~~~-~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~ 206 (229)
T cd03254 131 TVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADK 206 (229)
T ss_pred CHhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCE
Confidence 111 2346799999999999999999999999999999999999999999999996 4899999999975 45 46999
Q ss_pred EEEecCCeEEEecCHhHHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~~ 328 (691)
+++|++|++++.|+.+++...
T Consensus 207 i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 207 ILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999988777543
No 228
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-40 Score=374.76 Aligned_cols=215 Identities=24% Similarity=0.382 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus 4 ~l~~~~l~~~~~~---------------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I 61 (501)
T PRK11288 4 YLSFDGIGKTFPG---------------------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-QPDAGSI 61 (501)
T ss_pred eEEEeeeEEEECC---------------------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence 6899999999851 35999999999999999999999999999999999977 4679999
Q ss_pred EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|+++.. ..++.++||+|++.+++.+||+||+.++...+........+..++++++++.+||.+..++.+
T Consensus 62 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (501)
T PRK11288 62 LIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL--- 138 (501)
T ss_pred EECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch---
Confidence 999998742 245689999999999999999999988532111111233445567889999999987666655
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++
T Consensus 139 --~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~ 215 (501)
T PRK11288 139 --KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD 215 (501)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999888999999999964 57789999999999
Q ss_pred CeEEEecC
Q 005545 314 GSPIYSGR 321 (691)
Q Consensus 314 G~iv~~G~ 321 (691)
|+++..++
T Consensus 216 G~i~~~~~ 223 (501)
T PRK11288 216 GRYVATFD 223 (501)
T ss_pred CEEEeecC
Confidence 99987665
No 229
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-40 Score=344.25 Aligned_cols=218 Identities=23% Similarity=0.345 Sum_probs=181.6
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--- 152 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--- 152 (691)
.+..|+++||+++|.. +.+|+|+|++|++||+++|+||||||||||+++|+|+..+
T Consensus 17 ~~~~l~~~nl~~~~~~---------------------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~ 75 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG---------------------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG 75 (274)
T ss_pred CCceEEEeeEEEEeCC---------------------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccC
Confidence 3457999999999861 3589999999999999999999999999999999997642
Q ss_pred -CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--
Q 005545 153 -KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-- 223 (691)
Q Consensus 153 -~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-- 223 (691)
+.+|+|.++|+++.. ..++.++|++|++.+++. ||.||+.+....+ ... ....+.+++.++.+++.
T Consensus 76 ~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~ 150 (274)
T PRK14265 76 AKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEE 150 (274)
T ss_pred CCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchh
Confidence 258999999988731 346789999999988874 9999998764322 111 12234566778888874
Q ss_pred --ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH
Q 005545 224 --RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRL 301 (691)
Q Consensus 224 --~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i 301 (691)
+..++ .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+
T Consensus 151 l~~~~~~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~ 223 (274)
T PRK14265 151 VKDKLKE-----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QA 223 (274)
T ss_pred hHHHhcC-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HH
Confidence 22333 3457999999999999999999999999999999999999999999999975 689999999964 57
Q ss_pred HhcCCEEEEec---------CCeEEEecCHhHHH
Q 005545 302 YRMFDKVVVLS---------EGSPIYSGRAAQVM 326 (691)
Q Consensus 302 ~~~~D~v~~L~---------~G~iv~~G~~~~~~ 326 (691)
.++||++++|+ +|++++.|+++++.
T Consensus 224 ~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 224 SRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred HHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 89999999997 79999999999884
No 230
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-40 Score=343.75 Aligned_cols=221 Identities=23% Similarity=0.375 Sum_probs=181.3
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----C
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----K 153 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~ 153 (691)
..|+++||+++|.. +.+|+|+|++|++||+++|+|+||||||||+|+|+|+..+ +
T Consensus 9 ~~l~i~~v~~~~~~---------------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~ 67 (264)
T PRK14243 9 TVLRTENLNVYYGS---------------------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR 67 (264)
T ss_pred eEEEEeeeEEEECC---------------------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCC
Confidence 36999999999851 3589999999999999999999999999999999997532 3
Q ss_pred CceEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545 154 FSGKITYNGRQFS------SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227 (691)
Q Consensus 154 ~~G~I~~~G~~~~------~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 227 (691)
++|+|.++|+++. ...++.++|++|++.+++ .||.||+.+....+ ... .+..++++++++.+++.+..+
T Consensus 68 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~ 142 (264)
T PRK14243 68 VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVK 142 (264)
T ss_pred CceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHH
Confidence 6899999998873 134668999999998887 59999998765322 111 223345677788888743211
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
... +..++.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+
T Consensus 143 ~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~ 219 (264)
T PRK14243 143 DKL-KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDM 219 (264)
T ss_pred HHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCE
Confidence 111 123457999999999999999999999999999999999999999999999976 589999999964 68899999
Q ss_pred EEEec---------CCeEEEecCHhHHHH
Q 005545 308 VVVLS---------EGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~---------~G~iv~~G~~~~~~~ 327 (691)
+++|+ +|++++.|+++++.+
T Consensus 220 v~~l~~~~~~~~~~~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 220 TAFFNVELTEGGGRYGYLVEFDRTEKIFN 248 (264)
T ss_pred EEEEecccccccccCceEEEeCCHHHHHh
Confidence 99998 799999999988853
No 231
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=374.54 Aligned_cols=206 Identities=22% Similarity=0.366 Sum_probs=177.4
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLT 187 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lT 187 (691)
+.+|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+|.++|+++.. ..++.++||+|++.+++.+|
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY-QKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 45999999999999999999999999999999999977 4679999999998742 23567999999998999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545 188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG 267 (691)
Q Consensus 188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg 267 (691)
|+||+.++...........++..++++++++.+|+.+..++.+ ..|||||||||+|||+|+.+|++|||||||+|
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~ 164 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSS 164 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 9999987532110101133444567889999999987777665 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545 268 LDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 268 LD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 325 (691)
||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 165 LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 165 LTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999888999999999964 57789999999999999999987664
No 232
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.9e-41 Score=395.39 Aligned_cols=213 Identities=27% Similarity=0.430 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+|+|+.. .+.+|+|+|++|++||.+||+||||||||||+|+|+|++ .|.+|+|
T Consensus 477 ~I~~~~vsf~y~~~-------------------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I 536 (710)
T TIGR03796 477 YVELRNITFGYSPL-------------------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-QPWSGEI 536 (710)
T ss_pred eEEEEEEEEecCCC-------------------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEE
Confidence 69999999999732 235899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 227 (691)
.+||.++.+ .+|+.+|||+|++.+|+ .|++|||.++. + ..+.++ +.++++..|+ ++..|
T Consensus 537 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~~~----i~~al~~~~l~~~i~~lp~gl~ 606 (710)
T TIGR03796 537 LFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPDAD----LVRACKDAAIHDVITSRPGGYD 606 (710)
T ss_pred EECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCCHHH----HHHHHHHhCCHHHHHhCcCccc
Confidence 999999853 57899999999999996 59999998642 1 223333 3344444443 45678
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+ ....||||||||++|||||+++|++|+||||||+||+.++..+.+.|++ .++|+|++||+++. .+.||+
T Consensus 607 t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~ 680 (710)
T TIGR03796 607 AELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDE 680 (710)
T ss_pred ceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCE
Confidence 88875 3467999999999999999999999999999999999999999999986 47999999999753 567999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++++.|+++++++
T Consensus 681 Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 681 IIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999875
No 233
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.3e-40 Score=336.85 Aligned_cols=211 Identities=25% Similarity=0.395 Sum_probs=175.5
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
+..|+++||+++|.. +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|
T Consensus 5 ~~~i~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G 62 (225)
T PRK10247 5 SPLLQLQNVGYLAGD---------------------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-SPTSG 62 (225)
T ss_pred CceEEEeccEEeeCC---------------------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCC
Confidence 346999999998851 35899999999999999999999999999999999976 57799
Q ss_pred EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 005545 157 KITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVG 231 (691)
Q Consensus 157 ~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 231 (691)
+|.++|.++.. ..++.++|++|++.+++ .||+||+.+....+. ... ..++++++++.+||. ...++.+
T Consensus 63 ~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~- 135 (225)
T PRK10247 63 TLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN---QQP--DPAIFLDDLERFALPDTILTKNI- 135 (225)
T ss_pred eEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcC---CCh--HHHHHHHHHHHcCCChHHhcCCc-
Confidence 99999988742 24568999999998887 599999987543321 111 234577899999996 3455554
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEE
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||++. .+ +.||++++
T Consensus 136 ----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~ 209 (225)
T PRK10247 136 ----AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVIT 209 (225)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEE
Confidence 57999999999999999999999999999999999999999999999986 4899999999975 45 56999999
Q ss_pred ec-CCeEEEecCH
Q 005545 311 LS-EGSPIYSGRA 322 (691)
Q Consensus 311 L~-~G~iv~~G~~ 322 (691)
|+ ++..+.+|..
T Consensus 210 l~~~~~~~~~~~~ 222 (225)
T PRK10247 210 LQPHAGEMQEARY 222 (225)
T ss_pred EecccchHhhhhh
Confidence 95 4656666654
No 234
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4e-40 Score=410.84 Aligned_cols=228 Identities=27% Similarity=0.433 Sum_probs=201.9
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
.-.|+++||+++|+.+ .+.+|+|+|+.|++||++||+||||||||||+|+|+|.+ .+++|
T Consensus 1935 ~~~L~v~nLsK~Y~~~-------------------~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll-~ptsG 1994 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT-------------------SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT-TVTSG 1994 (2272)
T ss_pred CceEEEEEEEEEECCC-------------------CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC-CCCcc
Confidence 3469999999999621 246999999999999999999999999999999999987 47799
Q ss_pred EEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 157 KITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 157 ~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
+|.++|+++.. ..++.+||++|++.+++.+||+|+|.+.+.++ +.++++.+++++++++.+||.+.+|++++
T Consensus 1995 ~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-- 2069 (2272)
T TIGR01257 1995 DATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-- 2069 (2272)
T ss_pred EEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh--
Confidence 99999998853 34678999999999999999999999876554 23445556678899999999988888775
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
.|||||||||+||+||+.+|+||||||||+|||+.+++.++++|++++++|+|||++||++ +++.++|||+++|++
T Consensus 2070 ---~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~ 2145 (2272)
T TIGR01257 2070 ---TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVK 2145 (2272)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999988899999999996 568899999999999
Q ss_pred CeEEEecCHhHHHHHhhhcCC
Q 005545 314 GSPIYSGRAAQVMDYFGSIGY 334 (691)
Q Consensus 314 G~iv~~G~~~~~~~~f~~~g~ 334 (691)
|+++..|+++++.+.|.. ||
T Consensus 2146 G~i~~~Gs~q~Lk~~~g~-g~ 2165 (2272)
T TIGR01257 2146 GAFQCLGTIQHLKSKFGD-GY 2165 (2272)
T ss_pred CEEEEECCHHHHHHHhCC-ce
Confidence 999999999999888763 44
No 235
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.7e-40 Score=382.92 Aligned_cols=216 Identities=32% Similarity=0.529 Sum_probs=185.5
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+|+||+|+|+.. ++.+|+|+|+++++||.+||+||||||||||+|+|+|.. ++.+|+
T Consensus 337 ~~i~~~~v~f~y~~~-------------------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~p~~G~ 396 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ-------------------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGE 396 (574)
T ss_pred CeEEEEEEEEECCCC-------------------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCce
Confidence 469999999999631 135899999999999999999999999999999999977 577999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC------cccc
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT------RCRN 227 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~------~~~~ 227 (691)
|++||+++.+ .+|+.++||+||+.+|+ .|++||+.++. + ..++ +.+.++++..++. +..|
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~i~~al~~~~l~~~i~~p~Gld 466 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NASD----EALIEVLQQVGLEKLLEDDKGLN 466 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-ccCH----HHHHHHHHHcCCHHHHcCccccC
Confidence 9999998864 56889999999999996 59999998753 1 1222 3456677777764 3467
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+ ..+.||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++. .+.+|+
T Consensus 467 T~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~-~~tviiitHr~~~--~~~~d~ 542 (574)
T PRK11160 467 AWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRLTG--LEQFDR 542 (574)
T ss_pred chhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecChhH--HHhCCE
Confidence 88875 3567999999999999999999999999999999999999999999999864 7999999999754 467999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++++
T Consensus 543 i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 543 ICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999864
No 236
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.3e-40 Score=374.69 Aligned_cols=220 Identities=28% Similarity=0.434 Sum_probs=186.2
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCceEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGKI 158 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G~I 158 (691)
|+++||+++|. ++.+|+|+||++++||+++|+||||||||||||+|+|++. ++.+|+|
T Consensus 1 l~~~~l~~~~~---------------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i 59 (520)
T TIGR03269 1 IEVKNLTKKFD---------------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI 59 (520)
T ss_pred CEEEEEEEEEC---------------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE
Confidence 47899999885 1359999999999999999999999999999999999752 4779999
Q ss_pred EEC-----------------------CEeC----------C----hhccccEEEEccC-CCCCCCCCHHHHHHHHHhhcC
Q 005545 159 TYN-----------------------GRQF----------S----SSLKRKTGFVTQD-DVLYPHLTVLETLSYAALLRL 200 (691)
Q Consensus 159 ~~~-----------------------G~~~----------~----~~~~~~igyv~Q~-~~l~~~lTV~E~l~~~~~~~~ 200 (691)
.++ |.++ . ...++.++||+|+ +.+++.+||+||+.+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~- 138 (520)
T TIGR03269 60 IYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI- 138 (520)
T ss_pred EEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-
Confidence 997 2221 0 0235679999997 67888899999998865422
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005545 201 PKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280 (691)
Q Consensus 201 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L 280 (691)
..+.++..++++++++.+||++..++.+ +.|||||||||+|||||+.+|++|||||||+|||+.++..++++|
T Consensus 139 --~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 211 (520)
T TIGR03269 139 --GYEGKEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNAL 211 (520)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHH
Confidence 2334455678899999999987777655 469999999999999999999999999999999999999999999
Q ss_pred HHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHh
Q 005545 281 RGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF 329 (691)
Q Consensus 281 ~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 329 (691)
+++++ .|+|||++|||+. .+.++||++++|++|++++.|+++++...+
T Consensus 212 ~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 212 EEAVKASGISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 99976 4899999999964 577899999999999999999998886654
No 237
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-40 Score=381.74 Aligned_cols=223 Identities=25% Similarity=0.384 Sum_probs=188.5
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|.... +...+|+|+||++++||++||+||||||||||+|+|+|++ ++.+|+
T Consensus 11 ~~l~v~~l~~~y~~~~-----------------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll-~p~~G~ 72 (623)
T PRK10261 11 DVLAVENLNIAFMQEQ-----------------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL-EQAGGL 72 (623)
T ss_pred ceEEEeceEEEecCCC-----------------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCeE
Confidence 3699999999996321 1236999999999999999999999999999999999987 467999
Q ss_pred EEECCEeCC-------------h----hcc-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 005545 158 ITYNGRQFS-------------S----SLK-RKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVI 217 (691)
Q Consensus 158 I~~~G~~~~-------------~----~~~-~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l 217 (691)
|.++|..+. . ..+ +.+|||+|++ .+++.+||.||+.++.... ...+..+.++++.+++
T Consensus 73 i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l 150 (623)
T PRK10261 73 VQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH--QGASREEAMVEAKRML 150 (623)
T ss_pred EEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHH
Confidence 999986431 1 122 4799999998 6888999999999876432 1234555667889999
Q ss_pred HHcCCCc---cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEE
Q 005545 218 MELGLTR---CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITT 293 (691)
Q Consensus 218 ~~lgL~~---~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~ 293 (691)
+.+||.+ ..+..+ .+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|++++++ |+|||++
T Consensus 151 ~~~gL~~~~~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~i 225 (623)
T PRK10261 151 DQVRIPEAQTILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFI 225 (623)
T ss_pred HHCCCCChhhHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9999963 345544 579999999999999999999999999999999999999999999999865 8999999
Q ss_pred eCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545 294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 294 ~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
|||+ ..+.++||||++|++|++++.|+++++.
T Consensus 226 tHdl-~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 226 THDM-GVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred cCCH-HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 9996 4577999999999999999999988874
No 238
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=339.31 Aligned_cols=219 Identities=26% Similarity=0.455 Sum_probs=182.2
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++|++++|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.. +.+|+
T Consensus 9 ~~i~~~~~~~~~~---------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-~~~G~ 66 (257)
T PRK14246 9 DVFNISRLYLYIN---------------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-IYDSK 66 (257)
T ss_pred hheeeeeEEEecC---------------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCcCc
Confidence 3599999999985 2358999999999999999999999999999999999764 55655
Q ss_pred EEECC------EeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 005545 158 ITYNG------RQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR--- 224 (691)
Q Consensus 158 I~~~G------~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--- 224 (691)
|.++| +++.. ..++.++|++|++.+++.+||+||+.+..... ....+++..++++++++.+++.+
T Consensus 67 v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (257)
T PRK14246 67 IKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVY 144 (257)
T ss_pred eeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccch
Confidence 55554 55421 34678999999999999999999998864321 11123445567889999999963
Q ss_pred -cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545 225 -CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 225 -~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~ 303 (691)
..+. .++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+
T Consensus 145 ~~~~~-----~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~ 217 (257)
T PRK14246 145 DRLNS-----PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVAR 217 (257)
T ss_pred hhhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHH
Confidence 2333 3357999999999999999999999999999999999999999999999975 699999999964 5778
Q ss_pred cCCEEEEecCCeEEEecCHhHHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
.||++++|++|+++..|+.+++.+
T Consensus 218 ~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 218 VADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred hCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999988753
No 239
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3e-40 Score=335.46 Aligned_cols=209 Identities=33% Similarity=0.537 Sum_probs=172.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++|++++|... .+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus 2 ~l~~~~l~~~~~~~-------------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i 61 (220)
T cd03245 2 RIEFRNVSFSYPNQ-------------------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPTSGSV 61 (220)
T ss_pred eEEEEEEEEEcCCC-------------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCeE
Confidence 37899999988521 135899999999999999999999999999999999976 4679999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc---
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG--- 231 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg--- 231 (691)
.++|+++.. ..++.++|++|++.+++ .||.||+.+... ... .+.+.++++.+++.+..+..+.
T Consensus 62 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~ 131 (220)
T cd03245 62 LLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLD 131 (220)
T ss_pred EECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhcccccc
Confidence 999998742 24568999999998886 699999876421 111 2245677888888765554321
Q ss_pred ---CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 232 ---GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 232 ---~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
......||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .+ ++||++
T Consensus 132 ~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v 208 (220)
T cd03245 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRI 208 (220)
T ss_pred ceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEE
Confidence 1124579999999999999999999999999999999999999999999999775 89999999975 44 799999
Q ss_pred EEecCCeEEEec
Q 005545 309 VVLSEGSPIYSG 320 (691)
Q Consensus 309 ~~L~~G~iv~~G 320 (691)
++|++|++++.|
T Consensus 209 ~~l~~g~i~~~~ 220 (220)
T cd03245 209 IVMDSGRIVADG 220 (220)
T ss_pred EEEeCCeEeecC
Confidence 999999998764
No 240
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.5e-40 Score=391.55 Aligned_cols=216 Identities=30% Similarity=0.518 Sum_probs=184.3
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+|+||+|+|+.. .+.+|+|+|++|++||.+||+|+||||||||+|+|+|++ .|.+|+|
T Consensus 463 ~I~~~~vsf~Y~~~-------------------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p~~G~I 522 (694)
T TIGR03375 463 EIEFRNVSFAYPGQ-------------------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QPTEGSV 522 (694)
T ss_pred eEEEEEEEEEeCCC-------------------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceE
Confidence 59999999999631 235899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 227 (691)
.+||.++.+ .+|+.++||+|++.+|+ .|++|||.++. + ..+.++ +.++++..+ |++..|
T Consensus 523 ~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl~ 592 (694)
T TIGR03375 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YADDEE----ILRAAELAGVTEFVRRHPDGLD 592 (694)
T ss_pred EECCEEhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCCHHH----HHHHHHHcChHHHHHhCccccc
Confidence 999999864 57889999999999997 59999998752 1 233333 333444443 355678
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+ ....||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.||+
T Consensus 593 T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~ 668 (694)
T TIGR03375 593 MQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDR 668 (694)
T ss_pred ceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCE
Confidence 88886 3467999999999999999999999999999999999999999999999875 799999999975 3578999
Q ss_pred EEEecCCeEEEecCHhHHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~~ 328 (691)
|++|++|++++.|+++++++.
T Consensus 669 iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 669 IIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999998764
No 241
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7.4e-40 Score=334.18 Aligned_cols=223 Identities=28% Similarity=0.337 Sum_probs=176.4
Q ss_pred EEEEeEEEEEccCCCCCc-ccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 80 LKFEDVAYSINLHTSKGS-CFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
|+.+|+++.|+...+... ..+.......++++.+.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i 79 (224)
T cd03220 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-PPDSGTV 79 (224)
T ss_pred CceeecceeccccccCcchhhhhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence 356788888874321100 00000011234566778999999999999999999999999999999999976 4779999
Q ss_pred EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCccc
Q 005545 159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI 238 (691)
Q Consensus 159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 238 (691)
.++|+++.. ..+...+.+.+||+||+.+..... .....+..++++++++.++|.+..++.+ ++|
T Consensus 80 ~~~g~~~~~--------~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 143 (224)
T cd03220 80 TVRGRVSSL--------LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTY 143 (224)
T ss_pred EECCEEchh--------hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 999987531 111234556799999998765432 1233444567888999999988777766 469
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEE
Q 005545 239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIY 318 (691)
Q Consensus 239 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~ 318 (691)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++
T Consensus 144 SgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 144 SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999999877899999999964 5778999999999999987
Q ss_pred ec
Q 005545 319 SG 320 (691)
Q Consensus 319 ~G 320 (691)
.|
T Consensus 223 ~g 224 (224)
T cd03220 223 DG 224 (224)
T ss_pred cC
Confidence 65
No 242
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=346.63 Aligned_cols=225 Identities=25% Similarity=0.396 Sum_probs=183.4
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---- 152 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---- 152 (691)
+..|+++||+++|.. +.+|+|+||+|++||+++|+|+|||||||||++|+|++.+
T Consensus 43 ~~~l~i~nl~~~~~~---------------------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~ 101 (305)
T PRK14264 43 DAKLSVEDLDVYYGD---------------------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAA 101 (305)
T ss_pred CceEEEEEEEEEeCC---------------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCC
Confidence 347999999999862 3589999999999999999999999999999999997642
Q ss_pred CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC--C-------CCC-HHHHHHHHHHH
Q 005545 153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP--K-------KLT-REEKIEQAEMV 216 (691)
Q Consensus 153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~--~-------~~~-~~~~~~~v~~~ 216 (691)
+.+|+|.++|+++.. ..++.++|++|++.+++ .||+||+.++...+.. . ... .....++++++
T Consensus 102 p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (305)
T PRK14264 102 RIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180 (305)
T ss_pred CCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHH
Confidence 579999999988742 24568999999998887 5999999986432100 0 011 12334568889
Q ss_pred HHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005545 217 IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ 296 (691)
Q Consensus 217 l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~ 296 (691)
++.+++.+...... +..++.|||||||||+||+||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||+
T Consensus 181 l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~ 258 (305)
T PRK14264 181 LRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHN 258 (305)
T ss_pred HHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcC
Confidence 99998853222222 223467999999999999999999999999999999999999999999999987 4899999999
Q ss_pred CchHHHhcCCEE-EEecCCeEEEecCHhHHH
Q 005545 297 PSSRLYRMFDKV-VVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 297 p~~~i~~~~D~v-~~L~~G~iv~~G~~~~~~ 326 (691)
+. .+.++||++ ++|++|++++.|+++++.
T Consensus 259 ~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 259 MQ-QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HH-HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 64 577899997 578999999999988774
No 243
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8e-40 Score=331.52 Aligned_cols=204 Identities=27% Similarity=0.364 Sum_probs=175.9
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
.+..|+++|++++++. +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+
T Consensus 8 ~~~~l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~ 65 (214)
T PRK13543 8 APPLLAAHALAFSRNE---------------------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL-HVES 65 (214)
T ss_pred CcceEEEeeEEEecCC---------------------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCC
Confidence 3457999999998851 35899999999999999999999999999999999976 4679
Q ss_pred eEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 156 GKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 156 G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
|+|.++|+++.. ..++.++|++|++.+++.+|++||+.+....+ ... ..+.++++++.++|.+..++.+
T Consensus 66 G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~---~~~~~~~~l~~~~l~~~~~~~~---- 135 (214)
T PRK13543 66 GQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GRR---AKQMPGSALAIVGLAGYEDTLV---- 135 (214)
T ss_pred eeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CCc---HHHHHHHHHHHcCChhhccCCh----
Confidence 999999998753 23457999999999999999999998765332 111 2345678899999987777765
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
+.||||||||++|||+++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++++.
T Consensus 136 -~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 136 -RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 469999999999999999999999999999999999999999999999888999999999964 68899999999863
No 244
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.3e-40 Score=328.92 Aligned_cols=198 Identities=26% Similarity=0.369 Sum_probs=170.6
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||++++.. +.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus 2 l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~v~ 59 (204)
T PRK13538 2 LEARNLACERDE---------------------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA-RPDAGEVL 59 (204)
T ss_pred eEEEEEEEEECC---------------------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEE
Confidence 788999998851 35899999999999999999999999999999999977 47799999
Q ss_pred ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
++|+++.. ..++.++|++|++.+++.+||.||+.+....+ .. +..++++++++.+||.+..++.+ +
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~-----~ 128 (204)
T PRK13538 60 WQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPV-----R 128 (204)
T ss_pred ECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCCh-----h
Confidence 99998742 35678999999999999999999998765432 11 22356788999999987777655 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
.||||||||++||++|+.+|++++|||||+|||+.++..+.++|++++++|+|||++||++. .+....+|++.+
T Consensus 129 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 69999999999999999999999999999999999999999999999877899999999975 465666677766
No 245
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-40 Score=338.47 Aligned_cols=213 Identities=35% Similarity=0.523 Sum_probs=170.3
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+. .+.+|+|+|++|++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus 1 l~~~~l~~~~~~--------------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~v~ 59 (236)
T cd03253 1 IEFENVTFAYDP--------------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-DVSSGSIL 59 (236)
T ss_pred CEEEEEEEEeCC--------------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEE
Confidence 468999998851 134899999999999999999999999999999999976 57799999
Q ss_pred ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccc
Q 005545 160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-------RNS 228 (691)
Q Consensus 160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~ 228 (691)
++|+++.. ..++.++|++|++.+++ .||+||+.+... .....+ +.+.++..++.+. .++
T Consensus 60 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~ 129 (236)
T cd03253 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDT 129 (236)
T ss_pred ECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccc
Confidence 99988743 34567999999998885 699999987532 111211 2222333333211 122
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
... ..++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. .+ ..||++
T Consensus 130 ~~~-~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~ 205 (236)
T cd03253 130 IVG-ERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKI 205 (236)
T ss_pred hhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEE
Confidence 221 12467999999999999999999999999999999999999999999999987 999999999975 45 459999
Q ss_pred EEecCCeEEEecCHhHHHH
Q 005545 309 VVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~~ 327 (691)
++|++|++++.|+.+++.+
T Consensus 206 ~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 206 IVLKDGRIVERGTHEELLA 224 (236)
T ss_pred EEEECCEEEeeCCHHHHhh
Confidence 9999999999998877654
No 246
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-40 Score=316.42 Aligned_cols=215 Identities=32% Similarity=0.490 Sum_probs=189.6
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
++..++++.+|+.. .+.+|+|+|++|.+||.++++||||||||||||+++|.. .|..|+|
T Consensus 3 ~l~~~~~sl~y~g~-------------------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~-~P~~G~i 62 (259)
T COG4525 3 MLNVSHLSLSYEGK-------------------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV-TPSRGSI 62 (259)
T ss_pred eeehhheEEecCCc-------------------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc-CcccceE
Confidence 35567777777621 145899999999999999999999999999999999987 5779999
Q ss_pred EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCccc
Q 005545 159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI 238 (691)
Q Consensus 159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 238 (691)
.+||++++.. -..-|.|+|++.++|.+||.||+.|+..++ .+.+.++.+++.+.+..+||++..++.+ -+|
T Consensus 63 ~l~~r~i~gP-gaergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qL 133 (259)
T COG4525 63 QLNGRRIEGP-GAERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQL 133 (259)
T ss_pred EECCEeccCC-CccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----Eee
Confidence 9999998642 223589999999999999999999998876 6788999999999999999998777665 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecC--Ce
Q 005545 239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSE--GS 315 (691)
Q Consensus 239 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~--G~ 315 (691)
||||||||.|||||+.+|++|+||||+++||.-+++++.++|-++++ .|+.++++||+.. ++.-+++++++|+- ||
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCce
Confidence 99999999999999999999999999999999999999999999986 5999999999975 45669999999985 89
Q ss_pred EEEecCHh
Q 005545 316 PIYSGRAA 323 (691)
Q Consensus 316 iv~~G~~~ 323 (691)
++..-+++
T Consensus 213 vv~~~~~d 220 (259)
T COG4525 213 VVERLPLD 220 (259)
T ss_pred eeEecCCC
Confidence 99877766
No 247
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.1e-40 Score=343.73 Aligned_cols=214 Identities=25% Similarity=0.349 Sum_probs=178.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+.. ...+|+|+||+|++||+++|+|+||||||||+++|+|++. .+|+|
T Consensus 2 ~i~~~nls~~~~~~-------------------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I 60 (275)
T cd03289 2 QMTVKDLTAKYTEG-------------------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDI 60 (275)
T ss_pred eEEEEEEEEEeCCC-------------------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEE
Confidence 47899999999631 1348999999999999999999999999999999999874 58999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC--
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG-- 232 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-- 232 (691)
+++|.++.. .+++.++||+|++.+++. ||+||+.... .... +++.+.++.+||.+..+..++.
T Consensus 61 ~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~ 129 (275)
T cd03289 61 QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLD 129 (275)
T ss_pred EECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCccccc
Confidence 999998743 457789999999999974 9999996321 1122 2456677888886554443321
Q ss_pred ----CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 233 ----PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 233 ----~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
+..+.||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|++. .+. .||||
T Consensus 130 ~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri 206 (275)
T cd03289 130 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRF 206 (275)
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEE
Confidence 1335699999999999999999999999999999999999999999999875 4899999999974 454 59999
Q ss_pred EEecCCeEEEecCHhHHHH
Q 005545 309 VVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~~ 327 (691)
++|++|++++.|++++++.
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999865
No 248
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=338.67 Aligned_cols=222 Identities=23% Similarity=0.366 Sum_probs=181.9
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C--
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-K-- 153 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~-- 153 (691)
+..|+++||+++|+. +.+|+|+|++|++||+++|+|+||||||||+++|+|+..+ +
T Consensus 14 ~~~l~~~~l~~~~~~---------------------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~ 72 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---------------------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGN 72 (265)
T ss_pred CceEEEEEEEEEECC---------------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCC
Confidence 456999999999861 3599999999999999999999999999999999997642 2
Q ss_pred -CceEEEECCEeCC--------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHHcCCC
Q 005545 154 -FSGKITYNGRQFS--------SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLT-REEKIEQAEMVIMELGLT 223 (691)
Q Consensus 154 -~~G~I~~~G~~~~--------~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~ 223 (691)
.+|+|.++|+++. ...++.++|++|++.+++. ||+||+.+..... ... .....++++++++.+++.
T Consensus 73 ~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~ 148 (265)
T PRK14252 73 HYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALW 148 (265)
T ss_pred CcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCc
Confidence 6999999997653 1346689999999998885 9999998764322 111 222345677888888874
Q ss_pred ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~ 303 (691)
+...... +.....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+
T Consensus 149 ~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~ 225 (265)
T PRK14252 149 DEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAAR 225 (265)
T ss_pred hhhhHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHH
Confidence 2111111 123357999999999999999999999999999999999999999999999976 68999999996 45778
Q ss_pred cCCEEEEecCCeEEEecCHhHHH
Q 005545 304 MFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
+||++++|++|++++.|+.+++.
T Consensus 226 ~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 226 VSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988774
No 249
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.5e-40 Score=392.38 Aligned_cols=214 Identities=28% Similarity=0.442 Sum_probs=181.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+|+|+. ++.+|+|+|++|++||.+||+||||||||||+|+|+|++ .|.+|+|
T Consensus 473 ~I~~~~vsf~y~~--------------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p~~G~I 531 (708)
T TIGR01193 473 DIVINDVSYSYGY--------------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QARSGEI 531 (708)
T ss_pred cEEEEEEEEEcCC--------------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCCcEE
Confidence 5999999999962 135899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 227 (691)
++||.++.+ .+|+.+|||+|++.+|+. |++|||.++.. + ..+.++ +.++++..+ +++..|
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~----i~~a~~~a~l~~~i~~lp~gld 602 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQDE----IWAACEIAEIKDDIENMPLGYQ 602 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-CCCHHH----HHHHHHHhCCHHHHHhcccccC
Confidence 999998853 578899999999999965 99999987521 1 223332 333344333 345678
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+ ....||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ +|+|+|+++|+++ ..+.+|+
T Consensus 603 t~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~ 677 (708)
T TIGR01193 603 TELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDK 677 (708)
T ss_pred cEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCE
Confidence 88875 34679999999999999999999999999999999999999999999986 4799999999975 3578999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++++.|+++++++
T Consensus 678 i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 678 IIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999875
No 250
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-40 Score=374.30 Aligned_cols=224 Identities=23% Similarity=0.397 Sum_probs=186.3
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|+.. +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++++.+|+
T Consensus 258 ~~l~~~~l~~~~~~~------------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~ 319 (506)
T PRK13549 258 VILEVRNLTAWDPVN------------------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGE 319 (506)
T ss_pred ceEEEecCccccccc------------------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcE
Confidence 368999999887411 12358999999999999999999999999999999999874347999
Q ss_pred EEECCEeCCh-----hccccEEEEccCC---CCCCCCCHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHHHcCCC-ccc
Q 005545 158 ITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHLTVLETLSYAALLRLPK--KLTREEKIEQAEMVIMELGLT-RCR 226 (691)
Q Consensus 158 I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~ 226 (691)
|.++|+++.. ..++.++|++|++ .+++.+||.||+.+........ ....++..++++++++.++|. +..
T Consensus 320 i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 399 (506)
T PRK13549 320 IFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASP 399 (506)
T ss_pred EEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCc
Confidence 9999988742 2355799999995 4788899999998753211111 012334456788999999996 466
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
++.++ .|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||+. ++.++||
T Consensus 400 ~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d 473 (506)
T PRK13549 400 ELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSD 473 (506)
T ss_pred ccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCC
Confidence 76664 69999999999999999999999999999999999999999999999988999999999964 6789999
Q ss_pred EEEEecCCeEEEecCHhHH
Q 005545 307 KVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~ 325 (691)
++++|++|+++..|+++++
T Consensus 474 ~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 474 RVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEEEEECCEEEEEeccccC
Confidence 9999999999999877654
No 251
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-40 Score=309.75 Aligned_cols=216 Identities=31% Similarity=0.497 Sum_probs=189.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++|+++.|. ..++|.|++++.+.||.+.++||||+|||||+|.|.= +.-|.+|+.
T Consensus 2 sirv~~in~~yg---------------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl-le~p~sg~l 59 (242)
T COG4161 2 SIQLNGINCFYG---------------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL-LEMPRSGTL 59 (242)
T ss_pred ceEEcccccccc---------------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH-HhCCCCCeE
Confidence 467777777775 3468999999999999999999999999999999984 555779999
Q ss_pred EECCEeCC-------h---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545 159 TYNGRQFS-------S---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228 (691)
Q Consensus 159 ~~~G~~~~-------~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 228 (691)
.+.|...+ + .+|+.+|+|+|+..++|++||.|||.-+. .+. .++++++.+.++.++|+++.|.+.+|+
T Consensus 60 ~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr 137 (242)
T COG4161 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADR 137 (242)
T ss_pred EecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhcccccccc
Confidence 99886542 1 46889999999999999999999986543 222 256788888899999999999999887
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
.. -.|||||+|||+|||||+.+|++|++||||++|||.-..++++++++|+..|.|-+++||.. ....+.+.+|
T Consensus 138 ~p-----lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~v 211 (242)
T COG4161 138 YP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRV 211 (242)
T ss_pred Cc-----eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhhe
Confidence 55 36999999999999999999999999999999999999999999999999999999999995 4678999999
Q ss_pred EEecCCeEEEecCHhH
Q 005545 309 VVLSEGSPIYSGRAAQ 324 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~ 324 (691)
+.|.+|+|++.|+.+-
T Consensus 212 vyme~g~ive~g~a~~ 227 (242)
T COG4161 212 VYMENGHIVEQGDASC 227 (242)
T ss_pred EeeecCeeEeecchhh
Confidence 9999999999998753
No 252
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.3e-39 Score=372.10 Aligned_cols=224 Identities=27% Similarity=0.420 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF 154 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~ 154 (691)
+|+++||+++|+... ..+.+|+|+||++++||++||+||||||||||+|+|+|.+++ ++
T Consensus 5 ~l~~~~l~~~~~~~~-----------------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~ 67 (529)
T PRK15134 5 LLAIENLSVAFRQQQ-----------------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYP 67 (529)
T ss_pred eEEEeceEEEecCCC-----------------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCcc
Confidence 689999999996210 124699999999999999999999999999999999998753 26
Q ss_pred ceEEEECCEeCCh-------hcc-ccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005545 155 SGKITYNGRQFSS-------SLK-RKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224 (691)
Q Consensus 155 ~G~I~~~G~~~~~-------~~~-~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 224 (691)
+|+|.++|+++.. ..+ +.+|||+|++. +++.+||.|++.+..... ...+..+..++++++++.+||.+
T Consensus 68 ~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~ 145 (529)
T PRK15134 68 SGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQ 145 (529)
T ss_pred ceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCC
Confidence 9999999998742 122 47999999974 677789999987643221 12344556678899999999975
Q ss_pred c---ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchH
Q 005545 225 C---RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSR 300 (691)
Q Consensus 225 ~---~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~ 300 (691)
. .++++ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||++. .
T Consensus 146 ~~~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~ 219 (529)
T PRK15134 146 AAKRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-I 219 (529)
T ss_pred hHHHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-H
Confidence 2 35554 579999999999999999999999999999999999999999999999875 899999999964 5
Q ss_pred HHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 301 LYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 301 i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
+.++||+|++|++|++++.|+++++..
T Consensus 220 ~~~~~dri~~l~~G~i~~~g~~~~~~~ 246 (529)
T PRK15134 220 VRKLADRVAVMQNGRCVEQNRAATLFS 246 (529)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHhh
Confidence 778999999999999999999887743
No 253
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=9.2e-40 Score=338.49 Aligned_cols=200 Identities=31% Similarity=0.462 Sum_probs=173.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHH
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLE 190 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E 190 (691)
+|+|+||++++||+++|+||||||||||+++|+|+. ++ +|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 799999999999999999999999999999999976 34 8999999998743 23457999999988888899999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhh-------CCCEEEEeC
Q 005545 191 TLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV-------NPSCLLLDE 263 (691)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~-------~P~iLlLDE 263 (691)
|+.+.... ....++..++++++++.+||.+..++.+ +.||||||||++||++|+. +|++|||||
T Consensus 89 nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDE 159 (248)
T PRK03695 89 YLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDE 159 (248)
T ss_pred HHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcC
Confidence 99875321 1223344567889999999987766655 4699999999999999998 679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545 264 PTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 264 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+.+++.
T Consensus 160 Pt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 160 PMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999877999999999964 578999999999999999999987763
No 254
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-40 Score=320.87 Aligned_cols=170 Identities=34% Similarity=0.616 Sum_probs=154.0
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus 1 l~~~~l~~~~~~---------------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~ 58 (173)
T cd03230 1 IEVRNLSKRYGK---------------------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIK 58 (173)
T ss_pred CEEEEEEEEECC---------------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEE
Confidence 468999998851 24899999999999999999999999999999999976 46799999
Q ss_pred ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
++|+++.. ..++.++|++|++.+++.+||.||+.
T Consensus 59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------------------------------------------- 95 (173)
T cd03230 59 VLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------------------------------------------- 95 (173)
T ss_pred ECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-------------------------------------------
Confidence 99998753 35678999999999999999999963
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. ++.+.+|++++|++|++
T Consensus 96 -LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 -LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred -cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999877899999999964 57789999999999974
No 255
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.6e-40 Score=391.57 Aligned_cols=214 Identities=30% Similarity=0.491 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+|+||+|+|+... ++.+|+|+|++|+|||.+||+||||||||||+|+|+|.+ +|.+|+|
T Consensus 478 ~I~~~nVsf~Y~~~~------------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I 538 (711)
T TIGR00958 478 LIEFQDVSFSYPNRP------------------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGGQV 538 (711)
T ss_pred eEEEEEEEEECCCCC------------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEE
Confidence 599999999997321 235899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 227 (691)
.+||+++.+ .++++++||+||+.+|+ .|++|||.++.. ..+++ ++.++++..++ ++..|
T Consensus 539 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~-----~~~~e----~i~~al~~a~l~~~i~~lp~Gld 608 (711)
T TIGR00958 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLT-----DTPDE----EIMAAAKAANAHDFIMEFPNGYD 608 (711)
T ss_pred EECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCCCccC
Confidence 999999853 56789999999999996 699999987531 22222 34455555554 44578
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+ ....||||||||++|||||+++|+||+||||||+||+.+.+.+.+ .. ..+++|+|+++|+++ ..+.+|+
T Consensus 609 T~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~ 682 (711)
T TIGR00958 609 TEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQ 682 (711)
T ss_pred CcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCE
Confidence 88875 346799999999999999999999999999999999999999988 22 235899999999974 3578999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++++.|+++++++
T Consensus 683 IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 683 ILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEEECCEEEEeeCHHHHHh
Confidence 99999999999999999875
No 256
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9e-40 Score=342.87 Aligned_cols=234 Identities=27% Similarity=0.468 Sum_probs=202.5
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
.++.|+.+||...|+.+.+ ++. ......++++++|+++++||.++|+|.||||||||-.+|.+++. + +
T Consensus 273 ~~~ll~~~~v~v~f~i~~g--~~~--------r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-s-~ 340 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGG--FLR--------RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-S-Q 340 (534)
T ss_pred CCceEEecceEEEEecCCc--ccc--------ccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC-c-C
Confidence 6788999999999987632 111 12234579999999999999999999999999999999999773 3 6
Q ss_pred eEEEECCEeCCh-------hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005545 156 GKITYNGRQFSS-------SLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226 (691)
Q Consensus 156 G~I~~~G~~~~~-------~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 226 (691)
|+|.++|+++.. .+|+++..|||||. +.|.+||.|-+.-+....-| ..++.++.+++.++|+++||+...
T Consensus 341 G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~ 419 (534)
T COG4172 341 GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT 419 (534)
T ss_pred ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH
Confidence 999999999863 36789999999986 89999999999887665533 568899999999999999997543
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~ 305 (691)
..+ ++.+.|||||||++|||||+.+|++++||||||+||-+-+.+|+++|++|++ .|.+-++++||. ..+..+|
T Consensus 420 r~R----YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~ 494 (534)
T COG4172 420 RNR----YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALC 494 (534)
T ss_pred hhc----CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhh
Confidence 332 3457899999999999999999999999999999999999999999999986 499999999995 5688999
Q ss_pred CEEEEecCCeEEEecCHhHHHH
Q 005545 306 DKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 306 D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
|+|+||++|+||+.|+.+++++
T Consensus 495 ~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 495 HRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred ceEEEEeCCEEeeeCCHHHHhc
Confidence 9999999999999999999954
No 257
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.1e-39 Score=327.37 Aligned_cols=195 Identities=29% Similarity=0.418 Sum_probs=169.8
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||++.|+. +.+|+|+|++|++||++||+|+||||||||+++|+|+. ++.+|+|.
T Consensus 1 l~i~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 58 (201)
T cd03231 1 LEADELTCERDG---------------------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-PPLAGRVL 58 (201)
T ss_pred CEEEEEEEEeCC---------------------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEE
Confidence 468899998851 35899999999999999999999999999999999977 57799999
Q ss_pred ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
++|+++.. ..++.++|++|++.+++.+||+||+.+.... . ..++++++++.+||.+..++.+ +
T Consensus 59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~-----~ 124 (201)
T cd03231 59 LNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD------H---SDEQVEEALARVGLNGFEDRPV-----A 124 (201)
T ss_pred ECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCch-----h
Confidence 99988642 4567899999999999999999999874311 1 2346788999999987776655 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. +....+|+++++
T Consensus 125 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 69999999999999999999999999999999999999999999999888999999999976 467899999887
No 258
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9.5e-40 Score=373.31 Aligned_cols=230 Identities=27% Similarity=0.452 Sum_probs=188.9
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|+...+. ..++.+.+.+|+|+||+|++||+++|+||||||||||+|+|+|++ + .+|+
T Consensus 274 ~~l~~~~l~~~~~~~~~~----------~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~ 341 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGI----------LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGE 341 (529)
T ss_pred CcccccCcEEEeecCccc----------cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcE
Confidence 369999999999521000 000001246999999999999999999999999999999999976 3 6999
Q ss_pred EEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545 158 ITYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN 227 (691)
Q Consensus 158 I~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 227 (691)
|+++|+++.. .+++.++||+|++ .+++.+||.||+.++...+. ......+.+++++++++.+||. +..+
T Consensus 342 i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~ 420 (529)
T PRK15134 342 IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRH 420 (529)
T ss_pred EEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHh
Confidence 9999988742 1256799999997 48888999999988653221 1123344556788999999997 4566
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCC
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D 306 (691)
+.+ +.|||||||||+|||+|+.+|++|||||||+|||+.++..++++|++++++ |+|||++|||+. .+.++||
T Consensus 421 ~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d 494 (529)
T PRK15134 421 RYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCH 494 (529)
T ss_pred cCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcC
Confidence 655 469999999999999999999999999999999999999999999999875 899999999964 5778999
Q ss_pred EEEEecCCeEEEecCHhHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~ 326 (691)
++++|++|++++.|+++++.
T Consensus 495 ~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 495 QVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred eEEEEECCEEEEEcCHHHHh
Confidence 99999999999999998874
No 259
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.3e-39 Score=326.58 Aligned_cols=192 Identities=30% Similarity=0.429 Sum_probs=163.6
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-CCCCceEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL-RGKFSGKI 158 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~-~~~~~G~I 158 (691)
|+++||+++|+. +.+|+|+||++++||+++|+|+||||||||+++|+|.. ..+.+|+|
T Consensus 1 l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i 59 (200)
T cd03217 1 LEIKDLHVSVGG---------------------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI 59 (200)
T ss_pred CeEEEEEEEeCC---------------------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEE
Confidence 468999998851 35899999999999999999999999999999999974 24679999
Q ss_pred EECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 159 TYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 159 ~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
.++|+++.. . .++.++|++|++.+++..|+++++. .
T Consensus 60 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~----- 100 (200)
T cd03217 60 LFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y----- 100 (200)
T ss_pred EECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----
Confidence 999998753 1 2346999999999998888887750 0
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh-cCCEEEEec
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR-MFDKVVVLS 312 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~-~~D~v~~L~ 312 (691)
..+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .+|++++|+
T Consensus 101 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~ 179 (200)
T cd03217 101 VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLY 179 (200)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEE
Confidence 01359999999999999999999999999999999999999999999999877899999999975 4656 799999999
Q ss_pred CCeEEEecCHhHHHHHhhhcC
Q 005545 313 EGSPIYSGRAAQVMDYFGSIG 333 (691)
Q Consensus 313 ~G~iv~~G~~~~~~~~f~~~g 333 (691)
+|++++.|+.+ +...|.+.|
T Consensus 180 ~G~i~~~~~~~-~~~~~~~~~ 199 (200)
T cd03217 180 DGRIVKSGDKE-LALEIEKKG 199 (200)
T ss_pred CCEEEEEccHH-HHhhhcccc
Confidence 99999999544 655554443
No 260
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-41 Score=362.87 Aligned_cols=215 Identities=32% Similarity=0.505 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.++++||+|+|+.+ ..++|+|+||++++||.+||+|+||||||||+++|+|.. ++.+|+|
T Consensus 336 ~l~~~~vsF~y~~~-------------------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i 395 (573)
T COG4987 336 ALELRNVSFTYPGQ-------------------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSI 395 (573)
T ss_pred eeeeccceeecCCC-------------------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCee
Confidence 79999999999853 235999999999999999999999999999999999976 5789999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-------RCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~ 227 (691)
.+||.++.. .+++.+++++|...+|. -|+++||..+. | +.+.+ .+.++++++||+ +..|
T Consensus 396 ~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~----~-~AsDE----el~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 396 TLNGVEIASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN----P-DASDE----ELWAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred eECCcChhhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC----C-CCCHH----HHHHHHHHcCHHHHHHhChhhhh
Confidence 999998753 46789999999999996 49999998753 2 23333 455667777774 3556
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+.+++++.|.+-++ |+|+|++||+... .+.|||
T Consensus 466 t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~dr 541 (573)
T COG4987 466 TWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDR 541 (573)
T ss_pred chhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCE
Confidence 77775 4577999999999999999999999999999999999999999999999776 8999999999764 588999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|+++++|.+++++.
T Consensus 542 Iivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 542 IIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEECCeeeecCCHHhhhc
Confidence 99999999999999999875
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.1e-39 Score=369.77 Aligned_cols=224 Identities=28% Similarity=0.423 Sum_probs=186.4
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
+..|+++||+++|+... .+.+.+|+|+||+|++||+++|+||||||||||+|+|+|++ ++.+|
T Consensus 277 ~~~l~~~~l~~~~~~~~----------------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~-~p~~G 339 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVD----------------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL-EPTSG 339 (520)
T ss_pred CceEEEeccEEEeccCC----------------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCe
Confidence 34799999999995210 01245999999999999999999999999999999999977 46799
Q ss_pred EEEEC-CEe---CCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 005545 157 KITYN-GRQ---FSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR- 224 (691)
Q Consensus 157 ~I~~~-G~~---~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~- 224 (691)
+|.++ |.+ +.. ..++.++|++|++.+++.+||+||+.+..... ...++..++++++++.+||.+
T Consensus 340 ~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~ 415 (520)
T TIGR03269 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEE 415 (520)
T ss_pred EEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCc
Confidence 99996 532 211 23457999999999999999999998754321 223334467889999999975
Q ss_pred ----cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCch
Q 005545 225 ----CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSS 299 (691)
Q Consensus 225 ----~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~ 299 (691)
..++.+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||+.
T Consensus 416 ~~~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~- 489 (520)
T TIGR03269 416 KAEEILDKYP-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD- 489 (520)
T ss_pred cchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-
Confidence 345544 579999999999999999999999999999999999999999999999864 899999999964
Q ss_pred HHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 300 RLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 300 ~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
.+.++||++++|++|++++.|+++++.+
T Consensus 490 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 490 FVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 5788999999999999999999888754
No 262
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-41 Score=323.97 Aligned_cols=208 Identities=28% Similarity=0.443 Sum_probs=185.7
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCC
Q 005545 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLT 187 (691)
Q Consensus 112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lT 187 (691)
.+.+|+|+|++|++|.+++++|||||||||||.+++.++ +.++|+|+++|.++.. ++.++++.+-|+..+...+|
T Consensus 13 ~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 467999999999999999999999999999999999766 5789999999999853 56778999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545 188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG 267 (691)
Q Consensus 188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg 267 (691)
|+|-+.|+.. ...++...++.+..+++.++.++|++..|+.. .+||||||||.-||+.|+.+.+.++||||.++
T Consensus 92 V~dLv~FGRf-PYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNN 165 (252)
T COG4604 92 VRDLVGFGRF-PYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNN 165 (252)
T ss_pred HHHHhhcCCC-cccCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcccc
Confidence 9999998742 11123344566778999999999999888766 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 268 LDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 268 LD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
||-+.+.+++++|++++++ |+||+++.||.+ .+..++|+|+-|++|+++..|++++++.
T Consensus 166 LDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 166 LDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999986 999999999976 4678999999999999999999999864
No 263
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.8e-40 Score=376.34 Aligned_cols=218 Identities=31% Similarity=0.504 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.++++|++|+|+.. .+.+|+|+|+++++||.++|+||||||||||+|+|+|.+ +|.+|+|
T Consensus 316 ~i~~~~v~~~y~~~-------------------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i 375 (544)
T TIGR01842 316 HLSVENVTIVPPGG-------------------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-PPTSGSV 375 (544)
T ss_pred eEEEEEEEEEcCCC-------------------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceE
Confidence 69999999999631 135899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHcCCCcccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIE-----QAEMVIMELGLTRCRNSV 229 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~ 229 (691)
.+||+++.. .+++.++||+|++.+++. |++||+.+.. ...++++..+ ..++.++.+ ++..|+.
T Consensus 376 ~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~ 447 (544)
T TIGR01842 376 RLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRL--PDGYDTV 447 (544)
T ss_pred EECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhC--ccccccc
Confidence 999998753 467899999999999975 9999997532 1223332221 123344433 4455777
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
+|+ ..+.||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++..+|+|+|+++|+++ ..+.||+++
T Consensus 448 ~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~ 524 (544)
T TIGR01842 448 IGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKIL 524 (544)
T ss_pred cCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEE
Confidence 765 35679999999999999999999999999999999999999999999999766899999999975 357899999
Q ss_pred EecCCeEEEecCHhHHHH
Q 005545 310 VLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~~~~ 327 (691)
+|++|++++.|+++++.+
T Consensus 525 ~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 525 VLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEECCEEEeeCCHHHHhh
Confidence 999999999999988754
No 264
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.5e-40 Score=378.31 Aligned_cols=214 Identities=32% Similarity=0.510 Sum_probs=181.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+|+|+.. +.+|+|+|++++|||.++|+|+||||||||+|+|+|+. +|.+|+|
T Consensus 334 ~I~~~~vsf~y~~~--------------------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~~G~I 392 (588)
T PRK13657 334 AVEFDDVSFSYDNS--------------------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQSGRI 392 (588)
T ss_pred eEEEEEEEEEeCCC--------------------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEE
Confidence 59999999999621 24899999999999999999999999999999999977 4679999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 227 (691)
.+||+++.+ .+++.++||+|++.+|+ .|++||+.++. + +.++++ +.++++..+ +++..|
T Consensus 393 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d~~----i~~al~~~~l~~~i~~lp~gld 462 (588)
T PRK13657 393 LIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DATDEE----MRAAAERAQAHDFIERKPDGYD 462 (588)
T ss_pred EECCEEhhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhCccccc
Confidence 999998864 56789999999999996 59999998752 1 223332 333444444 345578
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+ ..+.||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.+|+
T Consensus 463 t~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~~--~~~~~D~ 538 (588)
T PRK13657 463 TVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLS--TVRNADR 538 (588)
T ss_pred chhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecHH--HHHhCCE
Confidence 88875 3466999999999999999999999999999999999999999999999864 799999999974 4588999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++.+
T Consensus 539 ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 539 ILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred EEEEECCEEEEeCCHHHHHH
Confidence 99999999999999998864
No 265
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.2e-39 Score=324.20 Aligned_cols=194 Identities=28% Similarity=0.403 Sum_probs=165.8
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|. .+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus 1 l~~~~l~~~~~---------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 58 (198)
T TIGR01189 1 LAARNLACSRG---------------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-RPDSGEVR 58 (198)
T ss_pred CEEEEEEEEEC---------------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCccEEE
Confidence 46889998885 135899999999999999999999999999999999976 57799999
Q ss_pred ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
++|+++.. ..++.++|++|++.+++.+||.||+.+....+ . . + .++++++++.+||.+..++.++
T Consensus 59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~-~-~--~~~~~~~l~~~~l~~~~~~~~~----- 126 (198)
T TIGR01189 59 WNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH---G-G-A--QRTIEDALAAVGLTGFEDLPAA----- 126 (198)
T ss_pred ECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHc---C-C-c--HHHHHHHHHHcCCHHHhcCChh-----
Confidence 99988643 34568999999998998899999998764332 1 1 1 2357789999999887777664
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++.. -.+++++.
T Consensus 127 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 699999999999999999999999999999999999999999999998789999999999754 35677664
No 266
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-39 Score=356.40 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=193.8
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
.+..++.+|++++|+ ..++|+||||++++||++||+|.||||||||+|+|+|.+ +|++
T Consensus 5 ~~~ll~~~~i~K~Fg---------------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~p~~ 62 (500)
T COG1129 5 TPPLLELRGISKSFG---------------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-PPDS 62 (500)
T ss_pred ccceeeeecceEEcC---------------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-cCCC
Confidence 345789999999887 246999999999999999999999999999999999976 5889
Q ss_pred eEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccc
Q 005545 156 GKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSV 229 (691)
Q Consensus 156 G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 229 (691)
|+|++||++... .....|+.|+||..+.|+|||.||+.++...+.+ .-++++...+++.++|+.+|+....+++
T Consensus 63 G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~ 142 (500)
T COG1129 63 GEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL 142 (500)
T ss_pred ceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh
Confidence 999999998752 3456899999999999999999999876543321 2356777788899999999996457777
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
++ .||+||||.|.|||||..+++||+||||||+|+......+.+++++|+++|.+||++||.. .+++++|||+.
T Consensus 143 v~-----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~Drit 216 (500)
T COG1129 143 VG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRIT 216 (500)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEE
Confidence 76 5999999999999999999999999999999999999999999999999999999999995 67999999999
Q ss_pred EecCCeEEEecC
Q 005545 310 VLSEGSPIYSGR 321 (691)
Q Consensus 310 ~L~~G~iv~~G~ 321 (691)
||.+|+.+..++
T Consensus 217 VlRDG~~v~~~~ 228 (500)
T COG1129 217 VLRDGRVVGTRP 228 (500)
T ss_pred EEeCCEEeeecc
Confidence 999999998877
No 267
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.1e-39 Score=335.09 Aligned_cols=202 Identities=30% Similarity=0.412 Sum_probs=173.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|.. +.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus 4 ~l~~~~l~~~~~~---------------------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~-~p~~G~i 61 (251)
T PRK09544 4 LVSLENVSVSFGQ---------------------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV-APDEGVI 61 (251)
T ss_pred EEEEeceEEEECC---------------------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence 6899999999861 35899999999999999999999999999999999987 4679999
Q ss_pred EECCEeCChhccccEEEEccCCCCCCC--CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 159 TYNGRQFSSSLKRKTGFVTQDDVLYPH--LTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~--lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
.++| +..++|++|++.+++. .|+.+++.+. .... .+++.++++.+||.+..++.+ +
T Consensus 62 ~~~~-------~~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~ 119 (251)
T PRK09544 62 KRNG-------KLRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----Q 119 (251)
T ss_pred EECC-------ccCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----h
Confidence 9987 3469999999887775 4777776431 1111 235678999999988777655 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+ |+
T Consensus 120 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~~ 197 (251)
T PRK09544 120 KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-HH 197 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-Cc
Confidence 69999999999999999999999999999999999999999999999875 899999999964 5778999999996 57
Q ss_pred EEEecCHhHHH
Q 005545 316 PIYSGRAAQVM 326 (691)
Q Consensus 316 iv~~G~~~~~~ 326 (691)
+++.|+++++.
T Consensus 198 i~~~g~~~~~~ 208 (251)
T PRK09544 198 ICCSGTPEVVS 208 (251)
T ss_pred eEeeCCHHHHh
Confidence 99999988763
No 268
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=332.95 Aligned_cols=229 Identities=22% Similarity=0.306 Sum_probs=186.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccC-CCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATS-HGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
+.|+++||+.+|+...... .+.. +..+......+.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~-~p~~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNK--ERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-SPTVG 79 (264)
T ss_pred ceEEEeeeEEEEEecccch--HHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCce
Confidence 6789999999998532110 0000 000111224467999999999999999999999999999999999977 47799
Q ss_pred EEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 157 KITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 157 ~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
+|.++|+ ++++.|+..+.+.+|+.||+.+..... ....++..+.++++++.++|.+..++.+ +
T Consensus 80 ~I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (264)
T PRK13546 80 KVDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----K 142 (264)
T ss_pred EEEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----c
Confidence 9999985 457778877788899999998754332 2234445556778899999987777655 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++|++|++
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKL 221 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEE
Confidence 69999999999999999999999999999999999999999999999878999999999964 57789999999999999
Q ss_pred EEecCHhHHHH
Q 005545 317 IYSGRAAQVMD 327 (691)
Q Consensus 317 v~~G~~~~~~~ 327 (691)
++.|+.+++.+
T Consensus 222 ~~~g~~~~~~~ 232 (264)
T PRK13546 222 KDYGELDDVLP 232 (264)
T ss_pred EEeCCHHHHHH
Confidence 99999988765
No 269
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=370.25 Aligned_cols=215 Identities=23% Similarity=0.403 Sum_probs=180.7
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||++.+. .+|+|+||+|++||+++|+||||||||||+|+|+|++ ++++|+
T Consensus 264 ~~l~~~~l~~~~~-----------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~ 319 (510)
T PRK09700 264 TVFEVRNVTSRDR-----------------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD-KRAGGE 319 (510)
T ss_pred cEEEEeCccccCC-----------------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCCCe
Confidence 4689999986431 2799999999999999999999999999999999977 467999
Q ss_pred EEECCEeCCh-----hccccEEEEccC---CCCCCCCCHHHHHHHHHhhc---CCC--C-CCHHHHHHHHHHHHHHcCCC
Q 005545 158 ITYNGRQFSS-----SLKRKTGFVTQD---DVLYPHLTVLETLSYAALLR---LPK--K-LTREEKIEQAEMVIMELGLT 223 (691)
Q Consensus 158 I~~~G~~~~~-----~~~~~igyv~Q~---~~l~~~lTV~E~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~ 223 (691)
|.++|+++.. ..++.+|||+|+ ..+++.+||+||+.+....+ ... . ....+..++++++++.+||.
T Consensus 320 I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 399 (510)
T PRK09700 320 IRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399 (510)
T ss_pred EEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC
Confidence 9999988742 235679999998 46888999999998753211 000 0 12233345678999999996
Q ss_pred -ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHH
Q 005545 224 -RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLY 302 (691)
Q Consensus 224 -~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~ 302 (691)
+..++.++ .|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||+. .+.
T Consensus 400 ~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~ 473 (510)
T PRK09700 400 CHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EII 473 (510)
T ss_pred CCCccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHH
Confidence 66777664 69999999999999999999999999999999999999999999999888999999999964 678
Q ss_pred hcCCEEEEecCCeEEEecCH
Q 005545 303 RMFDKVVVLSEGSPIYSGRA 322 (691)
Q Consensus 303 ~~~D~v~~L~~G~iv~~G~~ 322 (691)
++||++++|++|++++.++.
T Consensus 474 ~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 474 TVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred hhCCEEEEEECCEEEEEecC
Confidence 99999999999999988765
No 270
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.8e-39 Score=327.66 Aligned_cols=209 Identities=30% Similarity=0.441 Sum_probs=170.9
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+.... ...++.+|+|+||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus 2 l~~~~l~~~~~~~~~--------------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~ 66 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ--------------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY-LPDSGRIL 66 (224)
T ss_pred EEEEeeEEEeecccC--------------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEE
Confidence 789999999963210 001246999999999999999999999999999999999977 46799999
Q ss_pred EC--CE--eCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-c
Q 005545 160 YN--GR--QFSS-------SL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-R 226 (691)
Q Consensus 160 ~~--G~--~~~~-------~~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~ 226 (691)
++ |. ++.. .. ++.++|++|++.+++.+||+|++.+..... .....+..+++.++++.+||.+. .
T Consensus 67 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~ 143 (224)
T TIGR02324 67 VRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLW 143 (224)
T ss_pred EecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhh
Confidence 98 43 4321 12 357999999999999999999998754321 22334445678889999999753 3
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
+..+ ++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ ..+.++||
T Consensus 144 ~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d 217 (224)
T TIGR02324 144 HLPP-----ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVAD 217 (224)
T ss_pred hCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcc
Confidence 4443 57999999999999999999999999999999999999999999999987799999999995 45667999
Q ss_pred EEEEec
Q 005545 307 KVVVLS 312 (691)
Q Consensus 307 ~v~~L~ 312 (691)
+++.+.
T Consensus 218 ~i~~~~ 223 (224)
T TIGR02324 218 RVMDVT 223 (224)
T ss_pred eeEecC
Confidence 998763
No 271
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1e-39 Score=376.39 Aligned_cols=216 Identities=28% Similarity=0.476 Sum_probs=183.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+|+|+.. ++.+|+|+|+++++||.++|+|+||||||||+|+|+|+. .+.+|+|
T Consensus 330 ~i~~~~v~f~y~~~-------------------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~~~~G~I 389 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-------------------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQI 389 (571)
T ss_pred eEEEEEEEEEcCCC-------------------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeE
Confidence 59999999999631 135899999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 227 (691)
++||.++++ .+++.++||+|++.+|+ .|++|||.++. +++.+++ +++++++.+|+ ++..|
T Consensus 390 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~~l~~~~l~~~i~~lp~gld 460 (571)
T TIGR02203 390 LLDGHDLADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQADRA----EIERALAAAYAQDFVDKLPLGLD 460 (571)
T ss_pred EECCEeHHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCCHH----HHHHHHHHcChHHHHHhCcCccc
Confidence 999998753 56788999999999996 49999998652 1123333 34455555554 45578
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+. .+.||||||||++|||+++.+|++++||||||+||+.+++.+++.|+++++ ++|+|++||++. ..+.||+
T Consensus 461 t~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~~--~~~~~D~ 536 (571)
T TIGR02203 461 TPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRLS--TIEKADR 536 (571)
T ss_pred ceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehhhH--HHHhCCE
Confidence 888864 467999999999999999999999999999999999999999999999854 699999999974 4688999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|+++..|+++++.+
T Consensus 537 ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 537 IVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999853
No 272
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-39 Score=319.17 Aligned_cols=171 Identities=42% Similarity=0.684 Sum_probs=153.7
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus 1 i~~~~l~~~~~~---------------------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 58 (178)
T cd03229 1 LELKNVSKRYGQ---------------------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSIL 58 (178)
T ss_pred CEEEEEEEEECC---------------------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence 468899998851 35899999999999999999999999999999999976 56799999
Q ss_pred ECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 160 YNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 160 ~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
++|+++.. ..++.++|++|++.+++.+|++||+.+.
T Consensus 59 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------------------------------------- 100 (178)
T cd03229 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-------------------------------------- 100 (178)
T ss_pred ECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec--------------------------------------
Confidence 99988742 3457899999999999899999997532
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.+|++++|+
T Consensus 101 ----lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~ 175 (178)
T cd03229 101 ----LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLR 175 (178)
T ss_pred ----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 7999999999999999999999999999999999999999999999887 899999999964 5777999999999
Q ss_pred CCe
Q 005545 313 EGS 315 (691)
Q Consensus 313 ~G~ 315 (691)
+|+
T Consensus 176 ~g~ 178 (178)
T cd03229 176 DGK 178 (178)
T ss_pred CCC
Confidence 885
No 273
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.9e-39 Score=368.56 Aligned_cols=222 Identities=24% Similarity=0.392 Sum_probs=184.1
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++|++++|... +++.+|+|+||++++||+++|+||||||||||||+|+|.++++.+|+
T Consensus 256 ~~l~~~~l~~~~~~~------------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~ 317 (500)
T TIGR02633 256 VILEARNLTCWDVIN------------------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317 (500)
T ss_pred ceEEEeCCccccccc------------------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 368999999876311 01358999999999999999999999999999999999874347999
Q ss_pred EEECCEeCCh-----hccccEEEEccCC---CCCCCCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cc
Q 005545 158 ITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHLTVLETLSYAALLRLP--KKLTREEKIEQAEMVIMELGLTR-CR 226 (691)
Q Consensus 158 I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~ 226 (691)
|.++|+++.. ..++.+|||+|+. .+++.+||+||+.++...... ......+.+++++++++.++|.+ ..
T Consensus 318 i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 397 (500)
T TIGR02633 318 VFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP 397 (500)
T ss_pred EEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCc
Confidence 9999998742 2356899999995 588999999999875321111 01223334567889999999964 46
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
++.++ .|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||+. ++.++||
T Consensus 398 ~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d 471 (500)
T TIGR02633 398 FLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSD 471 (500)
T ss_pred cCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCC
Confidence 66664 69999999999999999999999999999999999999999999999988999999999964 6889999
Q ss_pred EEEEecCCeEEEecCHh
Q 005545 307 KVVVLSEGSPIYSGRAA 323 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~ 323 (691)
++++|++|+++..++.+
T Consensus 472 ~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 472 RVLVIGEGKLKGDFVNH 488 (500)
T ss_pred EEEEEECCEEEEEEccc
Confidence 99999999999877544
No 274
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.8e-39 Score=328.55 Aligned_cols=208 Identities=27% Similarity=0.398 Sum_probs=170.2
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++|++++++.. ++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|
T Consensus 2 ~l~~~~l~~~~~~~-------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i 61 (221)
T cd03244 2 DIEFKNVSLRYRPN-------------------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-ELSSGSI 61 (221)
T ss_pred cEEEEEEEEecCCC-------------------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEE
Confidence 37899999998621 135899999999999999999999999999999999976 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN------- 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------- 227 (691)
.++|.++.. ..++.++|++|++.+++ .||+||+.+.. .... +++.+.++.+++.+..+
T Consensus 62 ~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~ 130 (221)
T cd03244 62 LIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLD 130 (221)
T ss_pred EECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhcccccc
Confidence 999998743 35678999999998776 59999986421 1121 23455566666654332
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.. +..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+. .||+
T Consensus 131 ~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~ 206 (221)
T cd03244 131 TVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDR 206 (221)
T ss_pred ccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCE
Confidence 111 124568999999999999999999999999999999999999999999999865 689999999975 454 5999
Q ss_pred EEEecCCeEEEecC
Q 005545 308 VVVLSEGSPIYSGR 321 (691)
Q Consensus 308 v~~L~~G~iv~~G~ 321 (691)
+++|++|++++.|+
T Consensus 207 i~~l~~g~~~~~~~ 220 (221)
T cd03244 207 ILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEECCeEEecCC
Confidence 99999999998875
No 275
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.3e-39 Score=320.81 Aligned_cols=176 Identities=34% Similarity=0.537 Sum_probs=152.1
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh------hccccEEEEccCCC--CCC
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS------SLKRKTGFVTQDDV--LYP 184 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~--l~~ 184 (691)
+.+|+|+|++|++||+++|+||||||||||+++|+|+. ++.+|+|.++|+++.. ..++.++|++|++. ++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~- 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL-RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF- 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-
Confidence 46999999999999999999999999999999999977 4679999999998741 24567999999973 45
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005545 185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEP 264 (691)
Q Consensus 185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP 264 (691)
..||+||+.+..... ....++..++++++++.+||.+..++.+ +.||||||||++|||||+.+|++++||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999998865322 2234445567889999999987777665 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545 265 TSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS 298 (691)
Q Consensus 265 tsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~ 298 (691)
|+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999888999999999964
No 276
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-39 Score=382.86 Aligned_cols=220 Identities=31% Similarity=0.513 Sum_probs=189.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+|+||+|.|+.. ....||+|+|+++++|+.+||+|||||||||.+-+|-..+ .|++|+|
T Consensus 987 ~I~~~~V~F~YPsR------------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY-dp~~G~V 1047 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR------------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY-DPDAGKV 1047 (1228)
T ss_pred EEEEeeeEeeCCCC------------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeE
Confidence 59999999999942 2357999999999999999999999999999999998654 6789999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HH--HcCCCcccccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-IM--ELGLTRCRNSVVG 231 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~-l~--~lgL~~~~~~~vg 231 (691)
.+||+++.+ .+|+++|.|.|+|.||. -|++|||.|+. . +.+.+|..+.++.. +. ..+|++..||.+|
T Consensus 1048 ~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1048 KIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred EECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence 999999864 57999999999999995 69999999982 1 24555544333221 11 1378999999999
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+ ...+||||||||++||||+++||+||||||.||+||+++.+.+-+.|.+... |+|.|++.|+++. .+.||.|.|+
T Consensus 1122 e-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~-gRT~IvIAHRLST--IqnaD~I~Vi 1197 (1228)
T KOG0055|consen 1122 E-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME-GRTTIVIAHRLST--IQNADVIAVL 1197 (1228)
T ss_pred c-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc-CCcEEEEecchhh--hhcCCEEEEE
Confidence 6 3456999999999999999999999999999999999999999999999765 8999999999764 5899999999
Q ss_pred cCCeEEEecCHhHHHH
Q 005545 312 SEGSPIYSGRAAQVMD 327 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~~ 327 (691)
++|++++.|+++++++
T Consensus 1198 ~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1198 KNGKVVEQGTHDELLA 1213 (1228)
T ss_pred ECCEEEecccHHHHHh
Confidence 9999999999999986
No 277
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.4e-39 Score=332.12 Aligned_cols=208 Identities=30% Similarity=0.478 Sum_probs=169.7
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
-.|+++|++++|+... .+.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+
T Consensus 10 ~~l~~~~l~~~~~~~~------------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~ 70 (226)
T cd03248 10 GIVKFQNVTFAYPTRP------------------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY-QPQGGQ 70 (226)
T ss_pred ceEEEEEEEEEeCCCC------------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcE
Confidence 4689999999996311 135899999999999999999999999999999999977 577999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccc
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTR---EEKIEQAEMVIMEL--GLTRCRNS 228 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~ 228 (691)
|.++|+++.. ..++.++|++|++.+++ .||+||+.++... ..... ......++++++.+ |+.+..+.
T Consensus 71 i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~ 146 (226)
T cd03248 71 VLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGE 146 (226)
T ss_pred EEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhc
Confidence 9999987642 34568999999998886 6999999875321 11111 11112356778888 77665555
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+ ..||++
T Consensus 147 ~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i 218 (226)
T cd03248 147 KG-----SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQI 218 (226)
T ss_pred CC-----CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEE
Confidence 43 57999999999999999999999999999999999999999999999876 689999999975 45 459999
Q ss_pred EEecCCeE
Q 005545 309 VVLSEGSP 316 (691)
Q Consensus 309 ~~L~~G~i 316 (691)
++|++|++
T Consensus 219 ~~l~~g~i 226 (226)
T cd03248 219 LVLDGGRI 226 (226)
T ss_pred EEecCCcC
Confidence 99999974
No 278
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-39 Score=322.81 Aligned_cols=193 Identities=23% Similarity=0.310 Sum_probs=165.6
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|.. +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|+
T Consensus 2 l~~~~l~~~~~~---------------------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~ 59 (200)
T PRK13540 2 LDVIELDFDYHD---------------------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEIL 59 (200)
T ss_pred EEEEEEEEEeCC---------------------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEE
Confidence 789999998851 35999999999999999999999999999999999976 57899999
Q ss_pred ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
++|+++.. ..++.++|++|+..+++.+||+||+.+.... . .. ..+++++++.+++.+..++.+ .
T Consensus 60 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~-----~ 126 (200)
T PRK13540 60 FERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPC-----G 126 (200)
T ss_pred ECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCCh-----h
Confidence 99988752 3567899999999998899999999876421 1 11 236788999999987666655 3
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++.. .+.+|...
T Consensus 127 ~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 699999999999999999999999999999999999999999999998779999999999653 45677543
No 279
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.6e-39 Score=323.69 Aligned_cols=198 Identities=27% Similarity=0.389 Sum_probs=168.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus 2 ~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i 59 (207)
T PRK13539 2 MLEGEDLACVRGG---------------------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-PPAAGTI 59 (207)
T ss_pred EEEEEeEEEEECC---------------------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceE
Confidence 5899999999851 35899999999999999999999999999999999976 4679999
Q ss_pred EECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545 159 TYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237 (691)
Q Consensus 159 ~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 237 (691)
.++|.++.. ..++.++|++|++.+++.+||+||+.+....+ ... .++++++++.+||.+..++.+ +.
T Consensus 60 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~ 127 (207)
T PRK13539 60 KLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF-----GY 127 (207)
T ss_pred EECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-----hh
Confidence 999987642 25678999999998888999999998754322 111 234788999999987666655 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.. |+++.+..
T Consensus 128 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999999999999999999999999999999878999999999965 4544 88887743
No 280
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.2e-39 Score=317.55 Aligned_cols=160 Identities=31% Similarity=0.523 Sum_probs=144.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHL 186 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~l 186 (691)
+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.. ..++.++|++|++ .+++.+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-PPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 589999999999999999999999999999999977 4779999999988753 2456899999984 578889
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545 187 TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266 (691)
Q Consensus 187 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 266 (691)
|++||+.+... ||||||||++|||||+.+|++|||||||+
T Consensus 94 t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~ 133 (182)
T cd03215 94 SVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTR 133 (182)
T ss_pred cHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCc
Confidence 99999876421 79999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 267 gLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|++
T Consensus 134 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 134 GVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 9999999999999999987789999999996 468889999999999974
No 281
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.9e-39 Score=366.10 Aligned_cols=209 Identities=22% Similarity=0.332 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+++|+. +.+|+|+|+++++||+++|+||||||||||||+|+|++ ++++|+|
T Consensus 3 ~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~-~p~~G~i 60 (490)
T PRK10938 3 SLQISQGTFRLSD---------------------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL-PLLSGER 60 (490)
T ss_pred eEEEEeEEEEcCC---------------------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCceE
Confidence 5899999999851 24899999999999999999999999999999999977 4679999
Q ss_pred EECCEeCCh----hccccEEEEccCCCC--C-C-----CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVL--Y-P-----HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l--~-~-----~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 226 (691)
.++|.++.. ..++.++|++|++.. + + .+||+|++.+. .+..++++++++.+||.+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~ 129 (490)
T PRK10938 61 QSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALL 129 (490)
T ss_pred EECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhh
Confidence 999976532 234569999998643 1 1 47888876431 12245688999999998877
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||
T Consensus 130 ~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d 203 (490)
T PRK10938 130 DRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQ 203 (490)
T ss_pred hCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCC
Confidence 77664 69999999999999999999999999999999999999999999999888999999999964 5789999
Q ss_pred EEEEecCCeEEEecCHhHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~ 326 (691)
++++|++|+++..|+++++.
T Consensus 204 ~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 204 FAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988764
No 282
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.9e-39 Score=382.09 Aligned_cols=216 Identities=31% Similarity=0.516 Sum_probs=182.3
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+|+|+.. .+.+|+|+|+++++||.+||+|+||||||||+|+|+|+. .|.+|+
T Consensus 454 ~~i~~~~vsf~y~~~-------------------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~G~ 513 (694)
T TIGR01846 454 GAITFENIRFRYAPD-------------------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQ 513 (694)
T ss_pred CeEEEEEEEEEcCCC-------------------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCce
Confidence 369999999999732 135899999999999999999999999999999999977 467999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccc
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCR 226 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~ 226 (691)
|++||+++.+ .+|+.++||+|++.+++ .|++|||.++. + ..+.++ +.++++..+ |++..
T Consensus 514 I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl 583 (694)
T TIGR01846 514 VLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAPFEH----VIHAAKLAGAHDFISELPQGY 583 (694)
T ss_pred EEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCCHHH----HHHHHHHcChHHHHHhCcCcc
Confidence 9999999864 57889999999999996 59999997642 1 223332 333344433 34557
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
||.+|+. .+.||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++. .+.||
T Consensus 584 ~t~i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d 659 (694)
T TIGR01846 584 NTEVGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACD 659 (694)
T ss_pred CcEecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCC
Confidence 8888763 46799999999999999999999999999999999999999999999985 47999999999753 46799
Q ss_pred EEEEecCCeEEEecCHhHHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~ 327 (691)
++++|++|++++.|+++++.+
T Consensus 660 ~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 660 RIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999864
No 283
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.6e-39 Score=315.39 Aligned_cols=169 Identities=36% Similarity=0.606 Sum_probs=151.1
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+.. ++.+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.
T Consensus 1 i~~~~l~~~~~~~-------------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~ 60 (173)
T cd03246 1 LEVENVSFRYPGA-------------------EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL-RPTSGRVR 60 (173)
T ss_pred CEEEEEEEEcCCC-------------------CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEE
Confidence 4689999988621 135899999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545 160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235 (691)
Q Consensus 160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 235 (691)
++|.++.. ..++.++|++|++.+++ .||+||+
T Consensus 61 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l------------------------------------------- 96 (173)
T cd03246 61 LDGADISQWDPNELGDHVGYLPQDDELFS-GSIAENI------------------------------------------- 96 (173)
T ss_pred ECCEEcccCCHHHHHhheEEECCCCcccc-CcHHHHC-------------------------------------------
Confidence 99988743 34678999999998887 4999986
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+ +.||++++|++|+
T Consensus 97 --LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~ 172 (173)
T cd03246 97 --LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGR 172 (173)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCC
Confidence 7999999999999999999999999999999999999999999999877999999999974 45 6899999999997
Q ss_pred E
Q 005545 316 P 316 (691)
Q Consensus 316 i 316 (691)
+
T Consensus 173 i 173 (173)
T cd03246 173 V 173 (173)
T ss_pred C
Confidence 4
No 284
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-39 Score=406.16 Aligned_cols=220 Identities=27% Similarity=0.451 Sum_probs=184.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC------
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG------ 152 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~------ 152 (691)
.|+|+||+|+|+... .+.+|+|+||+|++|+.+||+||||||||||+++|.|++.+
T Consensus 1165 ~I~f~nVsF~Y~~~~------------------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~ 1226 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP------------------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHI 1226 (1466)
T ss_pred eEEEEEEEEECCCCC------------------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccc
Confidence 599999999997321 23599999999999999999999999999999999998753
Q ss_pred -----------------------------------------------CCceEEEECCEeCCh----hccccEEEEccCCC
Q 005545 153 -----------------------------------------------KFSGKITYNGRQFSS----SLKRKTGFVTQDDV 181 (691)
Q Consensus 153 -----------------------------------------------~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~ 181 (691)
+.+|+|++||+++.+ .+|+.+|||+|++.
T Consensus 1227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~ 1306 (1466)
T PTZ00265 1227 VFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM 1306 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc
Confidence 159999999999853 57899999999999
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCC
Q 005545 182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQA-----EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNP 256 (691)
Q Consensus 182 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P 256 (691)
+|+ .|++|||.|+. + ..+.++.++.+ ++.++ .|++..||.+|+ ....||||||||++|||||+++|
T Consensus 1307 LF~-gTIreNI~~g~----~-~at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265 1307 LFN-MSIYENIKFGK----E-DATREDVKRACKFAAIDEFIE--SLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred ccc-ccHHHHHhcCC----C-CCCHHHHHHHHHHcCCHHHHH--hCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCC
Confidence 995 79999999863 1 23444332222 22222 457788999995 44669999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCCchHHHhcCCEEEEecC----CeEE-EecCHhHHHH
Q 005545 257 SCLLLDEPTSGLDSTTAQRIVATLRGLA-RGGRTVITTIHQPSSRLYRMFDKVVVLSE----GSPI-YSGRAAQVMD 327 (691)
Q Consensus 257 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~~~H~p~~~i~~~~D~v~~L~~----G~iv-~~G~~~~~~~ 327 (691)
+|||||||||+||+.+.+.|.+.|+++. .+++|+|+++|+++. .+.||+|++|++ |+++ +.|+++++++
T Consensus 1378 ~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9999999999999999999999999997 368999999999743 578999999999 9955 8999999864
No 285
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.7e-39 Score=316.64 Aligned_cols=175 Identities=34% Similarity=0.531 Sum_probs=154.1
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus 1 i~~~~~~~~~~~~-------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~ 60 (178)
T cd03247 1 LSINNVSFSYPEQ-------------------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEIT 60 (178)
T ss_pred CEEEEEEEEeCCC-------------------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEE
Confidence 4789999988621 124899999999999999999999999999999999976 46799999
Q ss_pred ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
++|+++.. ..++.++|++|++.+++ .|++||+ +.
T Consensus 61 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~ 97 (178)
T cd03247 61 LDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GR 97 (178)
T ss_pred ECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cc
Confidence 99997742 34678999999998886 6999886 13
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||++||++. .+ ..+|++++|++|++
T Consensus 98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i 174 (178)
T cd03247 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKI 174 (178)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEE
Confidence 699999999999999999999999999999999999999999999996 4899999999975 45 57999999999999
Q ss_pred EEec
Q 005545 317 IYSG 320 (691)
Q Consensus 317 v~~G 320 (691)
++.|
T Consensus 175 ~~~~ 178 (178)
T cd03247 175 IMQG 178 (178)
T ss_pred EecC
Confidence 8764
No 286
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.8e-39 Score=371.37 Aligned_cols=215 Identities=28% Similarity=0.457 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++|++|+|+.. ++.+|+|+|+++++||.++|+||||||||||+++|+|.+ +|.+|+|
T Consensus 313 ~I~~~~v~~~y~~~-------------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i 372 (569)
T PRK10789 313 ELDVNIRQFTYPQT-------------------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDI 372 (569)
T ss_pred cEEEEEEEEECCCC-------------------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEE
Confidence 58999999999731 135899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~ 227 (691)
.+||+++.. .+++.++||+|++.+|+. |++||+.++. + ..+.++ ++++++..+ +++..+
T Consensus 373 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~----~~~~~~~~~l~~~i~~lp~gl~ 442 (569)
T PRK10789 373 RFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR----P-DATQQE----IEHVARLASVHDDILRLPQGYD 442 (569)
T ss_pred EECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCcCccc
Confidence 999998753 567889999999999974 9999998642 1 223332 333344433 345668
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+. ...||||||||++|||||+++|++|+|||||++||+.++..+.+.|+++. +|+|+|+++|+++. .+.+|+
T Consensus 443 t~~~~~-g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~ 518 (569)
T PRK10789 443 TEVGER-GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASE 518 (569)
T ss_pred ceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCE
Confidence 888763 46799999999999999999999999999999999999999999999986 58999999999743 477999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++.+
T Consensus 519 i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 519 ILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999998864
No 287
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-38 Score=350.24 Aligned_cols=198 Identities=25% Similarity=0.332 Sum_probs=169.8
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l 192 (691)
+.+|+|+||+|++||+++|+|||||||||||++|+|++ ++.+|+|.++|.+. ++.+...+.+.+||+||+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~---------~i~~~~~l~~~lTV~EnL 106 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAA---------LIAISSGLNGQLTGIENI 106 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEee---------eEEeccccCCCCcHHHHH
Confidence 46999999999999999999999999999999999977 47799999999752 122344566779999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005545 193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT 272 (691)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~ 272 (691)
.+..... ..+.++..++++++++.++|.+..++.+ +.||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 107 ~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 107 ELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF 178 (549)
T ss_pred Hhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 8754322 2334455567788999999988777665 4699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHh
Q 005545 273 AQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF 329 (691)
Q Consensus 273 ~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 329 (691)
+..+++.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++...|
T Consensus 179 r~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 179 TKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 99999999999878999999999964 578899999999999999999998886543
No 288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.1e-38 Score=331.96 Aligned_cols=215 Identities=25% Similarity=0.342 Sum_probs=171.9
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
-.|+++|++++|+.. .+.+|+|+||++++||+++|+|+||||||||+++|+|++ ++.+|+
T Consensus 18 ~~i~~~~l~~~~~~~-------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~ 77 (257)
T cd03288 18 GEIKIHDLCVRYENN-------------------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-DIFDGK 77 (257)
T ss_pred ceEEEEEEEEEeCCC-------------------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-CCCCCe
Confidence 359999999999621 135899999999999999999999999999999999977 577999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------c
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-------R 226 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~ 226 (691)
|.++|+++.. ..++.++|++|++.+++ .|++||+.... ..... .+.+.++.+++.+. .
T Consensus 78 i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~----~~~~~l~~~~l~~~~~~~~~~l 146 (257)
T cd03288 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDD----RLWEALEIAQLKNMVKSLPGGL 146 (257)
T ss_pred EEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHH----HHHHHHHHhCcHHHHhhccccc
Confidence 9999998753 35678999999998886 59999975321 11111 12223333333221 1
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
++.++ ...+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||++.. +. .||
T Consensus 147 ~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~~-~~d 222 (257)
T cd03288 147 DAVVT-EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFA-DRTVVTIAHRVST-IL-DAD 222 (257)
T ss_pred CcEec-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcC-CCEEEEEecChHH-HH-hCC
Confidence 22222 23467999999999999999999999999999999999999999999999754 8999999999764 54 499
Q ss_pred EEEEecCCeEEEecCHhHHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~ 327 (691)
++++|++|++++.|+++++.+
T Consensus 223 ri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 223 LVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred EEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999988754
No 289
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=6.9e-39 Score=370.16 Aligned_cols=216 Identities=30% Similarity=0.436 Sum_probs=179.1
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+|+|+.. +.+|+|+|+++++||.+||+||||||||||+++|+|.. ++.+|+|
T Consensus 334 ~i~~~~v~~~y~~~--------------------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i 392 (585)
T TIGR01192 334 AVEFRHITFEFANS--------------------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-DPTVGQI 392 (585)
T ss_pred eEEEEEEEEECCCC--------------------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-CCCCCEE
Confidence 59999999999621 24899999999999999999999999999999999977 5789999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH-----HHHHcCCCcccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM-----VIMELGLTRCRNSV 229 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~-----~l~~lgL~~~~~~~ 229 (691)
.+||.++.+ .+++.++||+|++.+++ .|++||+.++. + ..+.++..+..+. .+. .+.+..++.
T Consensus 393 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~ 464 (585)
T TIGR01192 393 LIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTL 464 (585)
T ss_pred EECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccch
Confidence 999998753 46789999999999886 69999998752 1 2233332222211 121 234455777
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
+|+ ....||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++. +++|+|++||+++ .+ +.+|+++
T Consensus 465 ~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~ 540 (585)
T TIGR01192 465 VGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVL 540 (585)
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEE
Confidence 765 356799999999999999999999999999999999999999999999885 4899999999974 34 6799999
Q ss_pred EecCCeEEEecCHhHHHH
Q 005545 310 VLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~~~~ 327 (691)
+|++|++++.|+.+++.+
T Consensus 541 ~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 541 FLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred EEECCEEEEECCHHHHHH
Confidence 999999999999998865
No 290
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=4.9e-39 Score=371.05 Aligned_cols=217 Identities=30% Similarity=0.515 Sum_probs=182.2
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+|+|+... ++.+|+|+|++++|||.++|+|+||||||||+|+|+|++ ++.+|+
T Consensus 336 ~~i~~~~v~f~y~~~~------------------~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~p~~G~ 396 (576)
T TIGR02204 336 GEIEFEQVNFAYPARP------------------DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-DPQSGR 396 (576)
T ss_pred ceEEEEEEEEECCCCC------------------CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCE
Confidence 3699999999997321 135899999999999999999999999999999999977 467999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Cccc
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCR 226 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~ 226 (691)
|.+||.++++ .+++.++|++|++.+|+ .|++|||.++. | ..+. +++.++++..|+ ++..
T Consensus 397 I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl 466 (576)
T TIGR02204 397 ILLDGVDLRQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGY 466 (576)
T ss_pred EEECCEEHHhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCC
Confidence 9999998853 46788999999999996 59999998742 1 1222 234455565554 3345
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
++.+|+ ..+.||||||||++||||++.+|++|+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ..+.+|
T Consensus 467 ~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~-~~t~IiitH~~~--~~~~~d 542 (576)
T TIGR02204 467 DTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK-GRTTLIIAHRLA--TVLKAD 542 (576)
T ss_pred CceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCC
Confidence 777765 3467999999999999999999999999999999999999999999999864 799999999974 457899
Q ss_pred EEEEecCCeEEEecCHhHHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~ 327 (691)
++++|++|++++.|+++++.+
T Consensus 543 ~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 543 RIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred EEEEEECCEEEeeecHHHHHH
Confidence 999999999999999988754
No 291
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.3e-38 Score=324.79 Aligned_cols=197 Identities=30% Similarity=0.439 Sum_probs=165.3
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCC--CCCCHHHHHHHHHhh
Q 005545 121 GMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLY--PHLTVLETLSYAALL 198 (691)
Q Consensus 121 ~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~--~~lTV~E~l~~~~~~ 198 (691)
|++++||+++|+|+||||||||+++|+|+. ++.+|+|.++|+++.. .++.++|++|++.++ ..+|+.||+.++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLI-PPAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 468899999999999999999999999976 4679999999987643 456799999998764 348999999875321
Q ss_pred cCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005545 199 RLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277 (691)
Q Consensus 199 ~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~ 277 (691)
... ......+..++++++++.+++.+..++.+ ++||||||||++|||+|+.+|++|++||||+|||+.++..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~ 153 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT 153 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 100 00112233456888999999987777665 469999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545 278 ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 278 ~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
+.|++++++|+|+|++||++. ++.+.||+++++ +|++++.|+.+++.
T Consensus 154 ~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 154 ELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999877999999999964 578899999999 89999999988764
No 292
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=361.54 Aligned_cols=204 Identities=25% Similarity=0.417 Sum_probs=174.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHL 186 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~l 186 (691)
+|+|+||+|++||+++|+||||||||||+|+|+|++ ++++|+|.++|+++.. ..++.+|||+|++ .+++.+
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL-PRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 699999999999999999999999999999999977 4679999999988742 2356799999996 578899
Q ss_pred CHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEe
Q 005545 187 TVLETLSYAALLRLP---KKLTREEKIEQAEMVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLD 262 (691)
Q Consensus 187 TV~E~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 262 (691)
||.||+.+....... .....++..++++++++.+||. +..++.++ .|||||||||+||++|+.+|++||||
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLD 420 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILD 420 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 999999875321100 0122334456788999999995 56676664 69999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545 263 EPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 263 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 325 (691)
|||+|||+.++..+.++|++++++|+|||++|||+. .+.++||++++|++|++++.|+++++
T Consensus 421 EPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 421 EPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999888999999999964 68899999999999999999987665
No 293
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.1e-38 Score=317.97 Aligned_cols=198 Identities=26% Similarity=0.368 Sum_probs=163.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++|++++|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus 6 ~l~~~~l~~~~~~~-------------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i 65 (207)
T cd03369 6 EIEVENLSVRYAPD-------------------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-EAEEGKI 65 (207)
T ss_pred eEEEEEEEEEeCCC-------------------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeE
Confidence 58999999998621 125899999999999999999999999999999999976 4679999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
.++|+++.. ..++.++|++|++.+++ .||+||+.+.. ....+ .+.+.++ + +. .
T Consensus 66 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~---~----~~-----~ 122 (207)
T cd03369 66 EIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR---V----SE-----G 122 (207)
T ss_pred EECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh---c----cC-----C
Confidence 999998742 34678999999998886 59999996421 11221 2333333 2 22 3
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++. .+. .+|++++|++|
T Consensus 123 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~-~~d~v~~l~~g 199 (207)
T cd03369 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TII-DYDKILVMDAG 199 (207)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECC
Confidence 35799999999999999999999999999999999999999999999985 4899999999975 454 49999999999
Q ss_pred eEEEecCH
Q 005545 315 SPIYSGRA 322 (691)
Q Consensus 315 ~iv~~G~~ 322 (691)
+++..|++
T Consensus 200 ~i~~~g~~ 207 (207)
T cd03369 200 EVKEYDHP 207 (207)
T ss_pred EEEecCCC
Confidence 99988753
No 294
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-40 Score=347.82 Aligned_cols=220 Identities=35% Similarity=0.528 Sum_probs=187.7
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
-.|+|+||+|.|+. ++++|+||||++.||+.+||+||||+||||++|+|.... ...+|.
T Consensus 536 G~i~fsnvtF~Y~p--------------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-dv~sGs 594 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDP--------------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-DVNSGS 594 (790)
T ss_pred CeEEEEEeEEecCC--------------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-hccCce
Confidence 36999999999984 357999999999999999999999999999999999765 466999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH--HHHH-HHcCCCccccccc
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA--EMVI-MELGLTRCRNSVV 230 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v--~~~l-~~lgL~~~~~~~v 230 (691)
|.+||+++.. .+|+.||.||||..+|. -|+..|+.|+. | +.+.++..+.+ .++- +.++.++..+|+|
T Consensus 595 I~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~V 668 (790)
T KOG0056|consen 595 ITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRV 668 (790)
T ss_pred EEEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhh
Confidence 9999999964 68999999999999995 59999999863 2 22344433322 2222 3367899999999
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
|+... .|||||||||+|||+++++|.+++|||.||+||..+..+|...|.+++. ++|-|++.|..+. + -.+|.|++
T Consensus 669 GERGL-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~ILv 744 (790)
T KOG0056|consen 669 GERGL-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADLILV 744 (790)
T ss_pred hhccc-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccEEEE
Confidence 97332 3899999999999999999999999999999999999999999999987 6899999999765 3 57999999
Q ss_pred ecCCeEEEecCHhHHHHH
Q 005545 311 LSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 311 L~~G~iv~~G~~~~~~~~ 328 (691)
+++|+|++.|.++|++..
T Consensus 745 i~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 745 ISNGRIVERGRHEELLKR 762 (790)
T ss_pred EeCCeEeecCcHHHHHhc
Confidence 999999999999999763
No 295
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=362.14 Aligned_cols=204 Identities=22% Similarity=0.370 Sum_probs=173.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHL 186 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~l 186 (691)
+++|+|++|++||+++|+||||||||||+|+|+|+. ++.+|+|.++|+++.. ..++.++|++|++ .+++.+
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-cCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 799999999999999999999999999999999977 4679999999988742 2356899999996 488899
Q ss_pred CHHHHHHHHHhhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEe
Q 005545 187 TVLETLSYAALLRL-PKK--LTREEKIEQAEMVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLD 262 (691)
Q Consensus 187 TV~E~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 262 (691)
||.||+.+...... +.. ....+.++.++++++.+++. +..++.++ .|||||||||+||++|+.+|++||||
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLD 421 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLD 421 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEc
Confidence 99999986532110 001 12233345688999999994 66777765 69999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545 263 EPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 263 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 325 (691)
|||+|||+.++.+++++|++++++|.|||++|||+ .++.++||++++|++|++++.|.++++
T Consensus 422 EPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 422 EPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred CCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999998899999999996 468899999999999999999977653
No 296
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-38 Score=310.14 Aligned_cols=233 Identities=30% Similarity=0.408 Sum_probs=202.3
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCce
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSG 156 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G 156 (691)
.+|+++||.+++.. +++||++||++|++||+.+||||||||||||.++|+|.-. ..++|
T Consensus 2 ~~L~I~dLhv~v~~--------------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G 61 (251)
T COG0396 2 MMLEIKDLHVEVEG--------------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG 61 (251)
T ss_pred ceeEEeeeEEEecC--------------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecc
Confidence 46899999999972 1479999999999999999999999999999999999642 35799
Q ss_pred EEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccc
Q 005545 157 KITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVV 230 (691)
Q Consensus 157 ~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v 230 (691)
+|+++|+++.. ..|+.+..-+|.|.=+|..|+.+.|..+...+........+..+++++.++.+++.+ ..++.+
T Consensus 62 ~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~v 141 (251)
T COG0396 62 EILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYV 141 (251)
T ss_pred eEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhccc
Confidence 99999999853 456789999999999999999999987765432221113456678899999999987 666666
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC--CEE
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF--DKV 308 (691)
Q Consensus 231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~--D~v 308 (691)
. .|+|||||||..|+..++.+|++.+||||-||||..+-+.+.+.++++++.|.+++++||.. ++.++. |+|
T Consensus 142 N----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~v 215 (251)
T COG0396 142 N----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKV 215 (251)
T ss_pred C----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEE
Confidence 5 47999999999999999999999999999999999999999999999999999999999994 566766 999
Q ss_pred EEecCCeEEEecCHhHHHHHhhhcCCCCC
Q 005545 309 VVLSEGSPIYSGRAAQVMDYFGSIGYVPG 337 (691)
Q Consensus 309 ~~L~~G~iv~~G~~~~~~~~f~~~g~~~~ 337 (691)
.+|.+|+|+..|.+ ++.++++.-||.|-
T Consensus 216 hvl~~GrIv~sG~~-el~~~le~~gy~~~ 243 (251)
T COG0396 216 HVLYDGRIVKSGDP-ELAEELEEKGYDWL 243 (251)
T ss_pred EEEECCEEEecCCH-HHHHHHHHhchHHh
Confidence 99999999999999 89999999999654
No 297
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.8e-38 Score=313.21 Aligned_cols=175 Identities=37% Similarity=0.610 Sum_probs=151.0
Q ss_pred EEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEE
Q 005545 81 KFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITY 160 (691)
Q Consensus 81 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~ 160 (691)
+++||+++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.+
T Consensus 1 ~~~~l~~~~~~---------------------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~ 58 (180)
T cd03214 1 EVENLSVGYGG---------------------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILL 58 (180)
T ss_pred CeeEEEEEECC---------------------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEE
Confidence 46888888851 35899999999999999999999999999999999976 578999999
Q ss_pred CCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 161 NGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 161 ~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
+|+++.. ..++.++|++| +++.+||.+..++.+ +
T Consensus 59 ~g~~~~~~~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~-----~ 96 (180)
T cd03214 59 DGKDLASLSPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPF-----N 96 (180)
T ss_pred CCEECCcCCHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCc-----c
Confidence 9998742 23456788887 556667765555444 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+++|++++|++|+
T Consensus 97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~ 175 (180)
T cd03214 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGR 175 (180)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999876 899999999965 5678999999999999
Q ss_pred EEEec
Q 005545 316 PIYSG 320 (691)
Q Consensus 316 iv~~G 320 (691)
+++.|
T Consensus 176 i~~~~ 180 (180)
T cd03214 176 IVAQG 180 (180)
T ss_pred EEecC
Confidence 98754
No 298
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.9e-38 Score=359.49 Aligned_cols=204 Identities=23% Similarity=0.328 Sum_probs=171.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHL 186 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~l 186 (691)
+|+|+||++++||++||+||||||||||+|+|+|++ ++.+|+|.++|+++.. ..++.++|++|++ .+++.+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 589999999999999999999999999999999977 4679999999998743 1345799999984 488889
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005545 187 TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPT 265 (691)
Q Consensus 187 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt 265 (691)
|+.||+......+.+........+++++++++.+||. +..+++++ .|||||||||+||++|+.+|++|||||||
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt 431 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPT 431 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCC
Confidence 9999986421111111111222345688999999997 66777664 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545 266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 266 sgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 325 (691)
+|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..|.++++
T Consensus 432 ~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 432 RGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred cCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999888999999999964 68899999999999999998877654
No 299
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-39 Score=324.71 Aligned_cols=195 Identities=33% Similarity=0.521 Sum_probs=174.1
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--------hccccEEEEccCCCCCCCCCH
Q 005545 117 NGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--------SLKRKTGFVTQDDVLYPHLTV 188 (691)
Q Consensus 117 ~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--------~~~~~igyv~Q~~~l~~~lTV 188 (691)
=++++..+.-.++||-|+||||||||+|+|+|+. .|++|.|.+||.-+.+ ..+|+|||||||-.+||++||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~-rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLT-RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccC-CccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 3678888776799999999999999999999987 4789999999986632 357899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005545 189 LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGL 268 (691)
Q Consensus 189 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgL 268 (691)
+.||.|+... . .....+++++.+|+++..+++.. .|||||||||+|+|||++.|++|++|||.++|
T Consensus 94 rgNL~YG~~~------~---~~~~fd~iv~lLGI~hLL~R~P~-----~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWK------S---MRAQFDQLVALLGIEHLLDRYPG-----TLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhcc------c---chHhHHHHHHHhCcHHHHhhCCC-----ccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 9999997531 1 23457789999999999988764 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 269 DSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 269 D~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
|-..+.+++-.|++|+++ +..|+.+||.+ .++.+++|+|++|++|++...|+.+++.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999986 78999999996 57899999999999999999999999864
No 300
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=5e-38 Score=337.78 Aligned_cols=187 Identities=29% Similarity=0.489 Sum_probs=164.8
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHH
Q 005545 131 MLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREE 208 (691)
Q Consensus 131 liGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 208 (691)
|+||||||||||||+|+|+. ++.+|+|.++|+++.. ..++.++|++|++.+++++||+||+.|+...+ ...+.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHH
Confidence 68999999999999999977 5779999999998753 34568999999999999999999999875432 234445
Q ss_pred HHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 005545 209 KIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-G 287 (691)
Q Consensus 209 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g 287 (691)
..++++++++.+||.+..++.+ +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 5667899999999988777665 479999999999999999999999999999999999999999999999865 8
Q ss_pred cEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 288 ~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
+|+|++||++. ++.++||++++|++|+++..|+++++.+
T Consensus 152 ~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 152 ITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999964 6789999999999999999999998854
No 301
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.5e-38 Score=338.96 Aligned_cols=216 Identities=29% Similarity=0.391 Sum_probs=192.8
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++|+++.|+ ...+++|||+++++||+.||+|.||||||||+++|.|.+ .|++|+
T Consensus 3 ~~l~~~~itK~f~---------------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-~P~~Ge 60 (501)
T COG3845 3 PALEMRGITKRFP---------------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-QPDSGE 60 (501)
T ss_pred ceEEEeccEEEcC---------------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-cCCcce
Confidence 4588999998887 246899999999999999999999999999999999977 578999
Q ss_pred EEECCEeCC-----hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 158 ITYNGRQFS-----SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 158 I~~~G~~~~-----~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
|.++|+++. +..+..||+|.|++.|.|++||.||+..+..-........++.+++++++.++.||+-..|.+++
T Consensus 61 I~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~- 139 (501)
T COG3845 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA- 139 (501)
T ss_pred EEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-
Confidence 999999874 24677999999999999999999999987643222244667778899999999999988888886
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
.||-||||||.|-++|..+|++|||||||+-|-|....+++++|++|+++|+|||++||-. .++.++|||+.+|.
T Consensus 140 ----dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR 214 (501)
T COG3845 140 ----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLR 214 (501)
T ss_pred ----cCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEe
Confidence 4999999999999999999999999999999999999999999999999999999999996 57999999999999
Q ss_pred CCeEEEecC
Q 005545 313 EGSPIYSGR 321 (691)
Q Consensus 313 ~G~iv~~G~ 321 (691)
+|+++..-+
T Consensus 215 ~Gkvvgt~~ 223 (501)
T COG3845 215 RGKVVGTVD 223 (501)
T ss_pred CCeEEeeec
Confidence 999876544
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-38 Score=305.71 Aligned_cols=167 Identities=40% Similarity=0.667 Sum_probs=147.6
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|... +..+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 l~~~~l~~~~~~~-------------------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~-~~~~G~i~ 60 (171)
T cd03228 1 IEFKNVSFSYPGR-------------------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-DPTSGEIL 60 (171)
T ss_pred CEEEEEEEEcCCC-------------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEE
Confidence 4688999988621 125899999999999999999999999999999999977 46799999
Q ss_pred ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545 160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235 (691)
Q Consensus 160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 235 (691)
++|+++.. ..++.++|++|++.+++ .|+.||+
T Consensus 61 ~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l------------------------------------------- 96 (171)
T cd03228 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI------------------------------------------- 96 (171)
T ss_pred ECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-------------------------------------------
Confidence 99998743 34568999999998776 5998886
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.. ||++++|++|+
T Consensus 97 --LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 --LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred --hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 799999999999999999999999999999999999999999999965 799999999975 4655 99999999885
No 303
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2e-38 Score=362.42 Aligned_cols=187 Identities=36% Similarity=0.566 Sum_probs=158.1
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+|+||+|+|+.. +.+|+|+|+++++||.+||+||||||||||+|+|+|.. +|.+|+
T Consensus 333 ~~I~~~~vsf~Y~~~--------------------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~ 391 (529)
T TIGR02868 333 PTLELRDLSFGYPGS--------------------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGE 391 (529)
T ss_pred ceEEEEEEEEecCCC--------------------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcE
Confidence 359999999999621 24899999999999999999999999999999999977 578999
Q ss_pred EEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545 158 ITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN 227 (691)
Q Consensus 158 I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 227 (691)
|.+||+++.+ .+|+.++||+|++.+|+. |++|||.++. + ..+++ ++.++++..++ ++..|
T Consensus 392 I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e----~i~~al~~a~l~~~i~~lp~Gld 461 (529)
T TIGR02868 392 VTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----P-DATDE----ELWAALERVGLADWLRSLPDGLD 461 (529)
T ss_pred EEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccC----C-CCCHH----HHHHHHHHcCCHHHHHhCccccc
Confidence 9999998763 567899999999999965 9999998752 1 22333 34444554443 56679
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p 297 (691)
|.+|+ ....||||||||++|||||+.+|++|+||||||+||+.++..|.+.|+++. +++|+|+++|++
T Consensus 462 T~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 462 TVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred chhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99986 335699999999999999999999999999999999999999999999875 479999999984
No 304
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-37 Score=310.30 Aligned_cols=191 Identities=21% Similarity=0.288 Sum_probs=160.7
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|.. +.+++ +|+++++||+++|+|+||||||||+++|+|+. ++.+|+|.
T Consensus 2 l~~~~l~~~~~~---------------------~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 58 (195)
T PRK13541 2 LSLHQLQFNIEQ---------------------KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIY 58 (195)
T ss_pred eEEEEeeEEECC---------------------cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEE
Confidence 789999999851 23555 99999999999999999999999999999976 57799999
Q ss_pred ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545 160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS 239 (691)
Q Consensus 160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 239 (691)
++|.++....++.++|++|++.+++.+||+||+.+..... . ..++++++++.+++.+..++.+ +.||
T Consensus 59 ~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS 125 (195)
T PRK13541 59 YKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLS 125 (195)
T ss_pred ECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCC
Confidence 9999875433456999999988888899999998754321 1 1235678889999987766654 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545 240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v 308 (691)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++.+++|+|+|+++|++.. .+.+|-+
T Consensus 126 ~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~ 192 (195)
T PRK13541 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQIL 192 (195)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhhee
Confidence 999999999999999999999999999999999999999999877778999999999753 3456654
No 305
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.1e-38 Score=392.37 Aligned_cols=214 Identities=25% Similarity=0.343 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+|+||+++|+.. .+.+|+|+||+|+|||.+||+|+||||||||+++|.|++ .+.+|+|
T Consensus 1237 ~I~f~nVsf~Y~~~-------------------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I 1296 (1622)
T PLN03130 1237 SIKFEDVVLRYRPE-------------------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRI 1296 (1622)
T ss_pred cEEEEEEEEEeCCC-------------------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceE
Confidence 59999999999631 135999999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 227 (691)
.+||.++.+ .+|+++++||||+.+|.. |++|||.++. ..++++ +.++++..++ ++..|
T Consensus 1297 ~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLd 1365 (1622)
T PLN03130 1297 LIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLD 1365 (1622)
T ss_pred EECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccC
Confidence 999999864 578999999999999975 9999997532 223333 3444444443 45678
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|+|+++|+++. ...|||
T Consensus 1366 t~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~~TvI~IAHRL~t--I~~~Dr 1441 (1622)
T PLN03130 1366 AEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNT--IIDCDR 1441 (1622)
T ss_pred ccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEeCChHH--HHhCCE
Confidence 88885 3456999999999999999999999999999999999999999999999854 7999999999754 456999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++++.|+++++++
T Consensus 1442 IlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1442 ILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999975
No 306
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-37 Score=301.01 Aligned_cols=157 Identities=33% Similarity=0.514 Sum_probs=142.3
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|+. +++|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus 1 l~~~~l~~~~~~---------------------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~ 58 (163)
T cd03216 1 LELRGITKRFGG---------------------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEIL 58 (163)
T ss_pred CEEEEEEEEECC---------------------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEE
Confidence 478999999861 35899999999999999999999999999999999977 57799999
Q ss_pred ECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 160 YNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 160 ~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
++|+++.. ..++.++|++|
T Consensus 59 ~~g~~~~~~~~~~~~~~~i~~~~q-------------------------------------------------------- 82 (163)
T cd03216 59 VDGKEVSFASPRDARRAGIAMVYQ-------------------------------------------------------- 82 (163)
T ss_pred ECCEECCcCCHHHHHhcCeEEEEe--------------------------------------------------------
Confidence 99998753 23567899988
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.+|++++|++|
T Consensus 83 ---LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g 158 (163)
T cd03216 83 ---LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDG 158 (163)
T ss_pred ---cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 7999999999999999999999999999999999999999999999877999999999964 577899999999999
Q ss_pred eEEE
Q 005545 315 SPIY 318 (691)
Q Consensus 315 ~iv~ 318 (691)
++++
T Consensus 159 ~i~~ 162 (163)
T cd03216 159 RVVG 162 (163)
T ss_pred EEEe
Confidence 9875
No 307
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-37 Score=313.13 Aligned_cols=196 Identities=30% Similarity=0.477 Sum_probs=153.9
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus 1 l~~~~l~~~~~~~~----------------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~ 63 (204)
T cd03250 1 ISVEDASFTWDSGE----------------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVS 63 (204)
T ss_pred CEEeEEEEecCCCC----------------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEE
Confidence 47899999886210 00025999999999999999999999999999999999976 57899999
Q ss_pred ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 005545 160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-------RNSVVGG 232 (691)
Q Consensus 160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~ 232 (691)
++| .++|++|++.++ ..|++||+.+... ...+ ...+.++.+++.+. .++...
T Consensus 64 ~~g---------~i~~~~q~~~l~-~~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~- 122 (204)
T cd03250 64 VPG---------SIAYVSQEPWIQ-NGTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG- 122 (204)
T ss_pred EcC---------EEEEEecCchhc-cCcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-
Confidence 998 599999999888 5799999987421 1111 12223333333221 122222
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA-TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
...+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+ +++++.++|+|||++||++. .+.. +|++++|
T Consensus 123 ~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l 200 (204)
T cd03250 123 EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVL 200 (204)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEE
Confidence 2346799999999999999999999999999999999999999998 56777666899999999975 4555 9999999
Q ss_pred cCCe
Q 005545 312 SEGS 315 (691)
Q Consensus 312 ~~G~ 315 (691)
++|+
T Consensus 201 ~~G~ 204 (204)
T cd03250 201 DNGR 204 (204)
T ss_pred eCCC
Confidence 9985
No 308
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.5e-38 Score=392.60 Aligned_cols=214 Identities=24% Similarity=0.323 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+|+||+|+|+.. .+.+|+|+|++|++||.+||+|+||||||||+++|.|++ .+.+|+|
T Consensus 1234 ~I~f~nVsf~Y~~~-------------------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-~p~~G~I 1293 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG-------------------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEKGRI 1293 (1495)
T ss_pred cEEEEEEEEEECCC-------------------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCceE
Confidence 59999999999621 135999999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 227 (691)
.+||.++.+ .+|++++|||||+.+|+. |++|||.+.. ..+++ .+.++++..++ ++..|
T Consensus 1294 ~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLd 1362 (1495)
T PLN03232 1294 MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLD 1362 (1495)
T ss_pred EECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCC
Confidence 999999864 578999999999999975 9999997531 22333 34444555444 45678
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|+|+++|+++. ...||+
T Consensus 1363 t~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~-~~TvI~IAHRl~t--i~~~Dr 1438 (1495)
T PLN03232 1363 AEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK-SCTMLVIAHRLNT--IIDCDK 1438 (1495)
T ss_pred ceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHHH--HHhCCE
Confidence 88875 3456999999999999999999999999999999999999999999998754 7999999999753 456999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++++.|+++++++
T Consensus 1439 IlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1439 ILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999964
No 309
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.1e-37 Score=314.40 Aligned_cols=188 Identities=23% Similarity=0.420 Sum_probs=151.2
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--------hccccEEEEccCCCCCC
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--------SLKRKTGFVTQDDVLYP 184 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--------~~~~~igyv~Q~~~l~~ 184 (691)
+.+|+|+||++++||+++|+|||||||||||++|+|+. .+.+|+|.++|+++.. ..++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~- 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM-QTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL- 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-
Confidence 35899999999999999999999999999999999977 4679999999987632 1346799999999887
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCcccCHHHHHHHHHHHHHhhCCC
Q 005545 185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN-------SVVGGPLFRGISGGERKRVSIGQEMLVNPS 257 (691)
Q Consensus 185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSGGerqRv~IA~aL~~~P~ 257 (691)
..|++||+.+... ...+ ..+++++.++|.+..+ +..+ ..+..|||||||||+|||+|+.+|+
T Consensus 92 ~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 92 NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 5799999976421 1111 2234455555543221 2122 2346799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 258 CLLLDEPTSGLDSTTAQRIVA--TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 258 iLlLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
+|||||||+|||+.++..+++ +++.++++|.|+|++||++. .+ ..+|++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 999999999999999999998 77777667899999999975 35 5799999999884
No 310
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=4.6e-38 Score=359.55 Aligned_cols=199 Identities=33% Similarity=0.510 Sum_probs=167.6
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+|+|+.. ++.+|+|+|+++++||.+||+||||||||||+|+|+|+. ++.+|+|
T Consensus 320 ~i~~~~v~f~y~~~-------------------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~I 379 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-------------------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-DPTEGSI 379 (529)
T ss_pred eEEEEEEEEECCCC-------------------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEE
Confidence 59999999999731 135899999999999999999999999999999999977 5779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 227 (691)
.+||.++.+ .+|+.++||+|++.+|+ .|++||+.++.. ..+++ .+.++++..++ ++..|
T Consensus 380 ~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~Gld 449 (529)
T TIGR02857 380 AVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARP-----DASDA----EIRRALERAGLDEFVAALPQGLD 449 (529)
T ss_pred EECCEehhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCccccc
Confidence 999998853 57889999999999996 599999987531 12222 34455555554 34568
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+ ....||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ..+.||+
T Consensus 450 t~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ 525 (529)
T TIGR02857 450 TLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADR 525 (529)
T ss_pred chhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCE
Confidence 88875 446699999999999999999999999999999999999999999999986 4799999999974 3578999
Q ss_pred EEEe
Q 005545 308 VVVL 311 (691)
Q Consensus 308 v~~L 311 (691)
|++|
T Consensus 526 i~~l 529 (529)
T TIGR02857 526 IVVL 529 (529)
T ss_pred EEeC
Confidence 9986
No 311
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=299.23 Aligned_cols=193 Identities=27% Similarity=0.446 Sum_probs=168.7
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCC
Q 005545 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLT 187 (691)
Q Consensus 112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lT 187 (691)
...||+++||.+.+||..+|.||||||||||+|+++.+. ++++|++++.|++++. .+|.+++|+.|.+.+|+. |
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-t 92 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-T 92 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-c
Confidence 356999999999999999999999999999999999876 5789999999999863 688999999999999975 9
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545 188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG 267 (691)
Q Consensus 188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg 267 (691)
|+||+.|...+|-.+. ..++..+.|++++|.+..-++ .+..||||||||++|+|-|..-|+||+||||||+
T Consensus 93 VeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 93 VEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred hhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 9999999877663221 234677899999998654322 2356999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-hCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 268 LDSTTAQRIVATLRGLA-RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 268 LD~~~~~~i~~~L~~l~-~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
||+.+++.|-++|.++. .+.+.++.+|||+. +..+.+||++-+..|++
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 99999999999999987 46899999999975 56789999999999875
No 312
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=8.4e-37 Score=356.08 Aligned_cols=220 Identities=29% Similarity=0.453 Sum_probs=190.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++|++++|+... +.+.+|+|+||++++||+++|+||||||||||+|+|+|+. ++.+|+|
T Consensus 4 ~l~~~nl~~~y~~~~-----------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i 65 (648)
T PRK10535 4 LLELKDIRRSYPSGE-----------------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-KPTSGTY 65 (648)
T ss_pred EEEEeeEEEEeCCCC-----------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEE
Confidence 699999999996311 1245899999999999999999999999999999999987 4779999
Q ss_pred EECCEeCCh----h----ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545 159 TYNGRQFSS----S----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230 (691)
Q Consensus 159 ~~~G~~~~~----~----~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 230 (691)
.+||+++.. . .++.++|++|++.+++.+|+.||+.+..... ....++..+++.++++.+||.+..++..
T Consensus 66 ~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 142 (648)
T PRK10535 66 RVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP 142 (648)
T ss_pred EECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc
Confidence 999998753 1 1468999999999999999999998764322 2234555667899999999988777665
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
+.||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||++. .+ +.||++++
T Consensus 143 -----~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~ 215 (648)
T PRK10535 143 -----SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIE 215 (648)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEE
Confidence 469999999999999999999999999999999999999999999999877999999999965 34 57999999
Q ss_pred ecCCeEEEecCHhHHH
Q 005545 311 LSEGSPIYSGRAAQVM 326 (691)
Q Consensus 311 L~~G~iv~~G~~~~~~ 326 (691)
|++|++++.|+.++..
T Consensus 216 l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 216 IRDGEIVRNPPAQEKV 231 (648)
T ss_pred EECCEEEeecCccccc
Confidence 9999999999998775
No 313
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=323.61 Aligned_cols=229 Identities=26% Similarity=0.424 Sum_probs=197.4
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---- 152 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---- 152 (691)
...|+.+||+..+.... +...++++|||++++||.+||+|.||||||-..+.++|+++.
T Consensus 4 ~~lL~v~nLsV~f~~~~-----------------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~ 66 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG-----------------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66 (534)
T ss_pred CcceeeeccEEEEecCC-----------------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCccc
Confidence 35689999999997543 246799999999999999999999999999999999998853
Q ss_pred CCceEEEECCEeCCh----hcc----ccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 005545 153 KFSGKITYNGRQFSS----SLK----RKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL 222 (691)
Q Consensus 153 ~~~G~I~~~G~~~~~----~~~----~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 222 (691)
..+|+|.|+|+++-. .+| .+|+++||+|. |.|-.|+...+.-..++ .+++++++.++++.++|+.+|+
T Consensus 67 ~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~--Hrg~~~~~Ar~r~lelL~~VgI 144 (534)
T COG4172 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL--HRGLSRAAARARALELLELVGI 144 (534)
T ss_pred CccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHcCC
Confidence 248999999998732 222 37999999985 88888998887765443 4577888889999999999999
Q ss_pred CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHH
Q 005545 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRL 301 (691)
Q Consensus 223 ~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i 301 (691)
.+..... +.++.+|||||||||.||+||+.+|++||.||||++||...+.+|+++|++|+++ |.+++++|||. ..+
T Consensus 145 ~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iV 221 (534)
T COG4172 145 PEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIV 221 (534)
T ss_pred Cchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHH
Confidence 8654433 2466799999999999999999999999999999999999999999999999875 99999999996 468
Q ss_pred HhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 302 YRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 302 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
.+++|||+||.+|++++.|..++++.
T Consensus 222 r~~ADrV~VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 222 RKFADRVYVMQHGEIVETGTTETLFA 247 (534)
T ss_pred HHhhhhEEEEeccEEeecCcHHHHhh
Confidence 99999999999999999999998863
No 314
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=335.71 Aligned_cols=221 Identities=29% Similarity=0.469 Sum_probs=188.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|.+++|++ .+.. .++.+|+|+||.+.+||.+|||||||||||||.|+|.|.. +|.+|.|
T Consensus 334 ~L~Ve~l~~-~PPg------------------~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~V 393 (580)
T COG4618 334 ALSVERLTA-APPG------------------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSV 393 (580)
T ss_pred eeeEeeeee-cCCC------------------CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcE
Confidence 588999988 3311 2367999999999999999999999999999999999976 5789999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHH-----HHHHHHHHHHHcCCCcccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREE-----KIEQAEMVIMELGLTRCRNSV 229 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~ 229 (691)
.+||.++.. .+-+.|||+|||-.||+. ||.|||. |+.++.+.+. +...+.|++- .|++..||.
T Consensus 394 RLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~ 465 (580)
T COG4618 394 RLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA-----RFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTR 465 (580)
T ss_pred EecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH-----hccccCCHHHHHHHHHHcChHHHHH--hCcCCccCc
Confidence 999998864 466799999999999986 9999995 2222333322 2223445443 568899999
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
+|+ -...||||||||+++||||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|+
T Consensus 466 iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkil 542 (580)
T COG4618 466 IGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKIL 542 (580)
T ss_pred cCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceee
Confidence 996 34679999999999999999999999999999999999999999999999999999999999985 578999999
Q ss_pred EecCCeEEEecCHhHHHHHhh
Q 005545 310 VLSEGSPIYSGRAAQVMDYFG 330 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~~~~~f~ 330 (691)
+|++|++-.+|+.+|++....
T Consensus 543 vl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 543 VLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred eecCChHHhcCCHHHHHHHhc
Confidence 999999999999999998754
No 315
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-37 Score=349.61 Aligned_cols=216 Identities=23% Similarity=0.351 Sum_probs=176.5
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
+..|+++||++.+ +.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++.+|
T Consensus 248 ~~~i~~~~l~~~~-----------------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G 303 (491)
T PRK10982 248 EVILEVRNLTSLR-----------------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR-EKSAG 303 (491)
T ss_pred CcEEEEeCccccc-----------------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC-cCCcc
Confidence 3468999988752 13899999999999999999999999999999999977 46799
Q ss_pred EEEECCEeCCh-----hccccEEEEccCC---CCCCCCCHHHHHHHHHh--hcCCCC-CCHHHHHHHHHHHHHHcCCC-c
Q 005545 157 KITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHLTVLETLSYAAL--LRLPKK-LTREEKIEQAEMVIMELGLT-R 224 (691)
Q Consensus 157 ~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~lTV~E~l~~~~~--~~~~~~-~~~~~~~~~v~~~l~~lgL~-~ 224 (691)
+|.++|+++.. ..++.++|++|++ .+++.+|+.+|..+... ...... ....+..+.++++++.+++. +
T Consensus 304 ~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 383 (491)
T PRK10982 304 TITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP 383 (491)
T ss_pred EEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC
Confidence 99999988753 2356799999985 47888998877432210 000001 12233445778899999995 4
Q ss_pred cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM 304 (691)
Q Consensus 225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~ 304 (691)
..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||+. ++.++
T Consensus 384 ~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~ 457 (491)
T PRK10982 384 GHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGI 457 (491)
T ss_pred Cccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhh
Confidence 556655 469999999999999999999999999999999999999999999999888999999999964 57899
Q ss_pred CCEEEEecCCeEEEecCH
Q 005545 305 FDKVVVLSEGSPIYSGRA 322 (691)
Q Consensus 305 ~D~v~~L~~G~iv~~G~~ 322 (691)
||++++|++|+++..++.
T Consensus 458 ~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 458 TDRILVMSNGLVAGIVDT 475 (491)
T ss_pred CCEEEEEECCEEEEEEcc
Confidence 999999999999976654
No 316
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.7e-37 Score=353.38 Aligned_cols=204 Identities=22% Similarity=0.268 Sum_probs=169.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+|+|+. ++.+|+|+|+++++||.+||+||||||||||+++|+|.+ +|.+|+|
T Consensus 322 ~i~~~~v~f~y~~--------------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~~~~G~i 380 (547)
T PRK10522 322 TLELRNVTFAYQD--------------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-QPQSGEI 380 (547)
T ss_pred eEEEEEEEEEeCC--------------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEE
Confidence 6999999999972 124899999999999999999999999999999999977 5789999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
.+||+++.+ .+++.++||+||+.+|+ .|++|| . .. ..++.+++.++.+++.+..+..-|...
T Consensus 381 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~ 446 (547)
T PRK10522 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRIS 446 (547)
T ss_pred EECCEECCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCC
Confidence 999999863 56789999999999886 477776 1 11 123456788889988754332111001
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
...||||||||++|||||+.+|++|+||||||+||+.++..+.+.|.++.+ .|+|+|+++|+++ ..+.+|++++|++
T Consensus 447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~ 524 (547)
T PRK10522 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRN 524 (547)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEEC
Confidence 247999999999999999999999999999999999999999999987654 5899999999974 4678999999999
Q ss_pred CeEEEe
Q 005545 314 GSPIYS 319 (691)
Q Consensus 314 G~iv~~ 319 (691)
|++++.
T Consensus 525 G~i~e~ 530 (547)
T PRK10522 525 GQLSEL 530 (547)
T ss_pred CEEEEe
Confidence 999876
No 317
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5.7e-37 Score=298.72 Aligned_cols=164 Identities=34% Similarity=0.485 Sum_probs=143.7
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|++++|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus 1 i~~~~~~~~~~~--------------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~ 59 (166)
T cd03223 1 IELENLSLATPD--------------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-PWGSGRIG 59 (166)
T ss_pred CEEEEEEEEcCC--------------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEE
Confidence 468999998851 135899999999999999999999999999999999977 46799999
Q ss_pred ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545 160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS 239 (691)
Q Consensus 160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 239 (691)
++|. +.++|++|++.++ ..||+||+.+. ..+.||
T Consensus 60 ~~~~-------~~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS 93 (166)
T cd03223 60 MPEG-------EDLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLS 93 (166)
T ss_pred ECCC-------ceEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCC
Confidence 9873 6799999998765 57999998642 014699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||++. . .+.+|++++|++|-
T Consensus 94 ~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~~ 164 (166)
T cd03223 94 GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-L-WKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-H-HhhCCEEEEEcCCC
Confidence 99999999999999999999999999999999999999999987 589999999974 3 47999999998753
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-37 Score=349.36 Aligned_cols=210 Identities=24% Similarity=0.407 Sum_probs=174.3
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++||+++|.. +.+|+|+||+|++||+++|+||||||||||||+|+|++ ++++|+|.
T Consensus 2 l~i~~ls~~~~~---------------------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~ 59 (530)
T PRK15064 2 LSTANITMQFGA---------------------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL-EPSAGNVS 59 (530)
T ss_pred EEEEEEEEEeCC---------------------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence 789999999851 35999999999999999999999999999999999977 46799999
Q ss_pred ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh-h-----------cCCCC-----------------CCHHHHH
Q 005545 160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAAL-L-----------RLPKK-----------------LTREEKI 210 (691)
Q Consensus 160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~-~-----------~~~~~-----------------~~~~~~~ 210 (691)
++|. +.+||++|++.+++.+||+|++.++.. . ..+.. ....+.+
T Consensus 60 ~~~~-------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (530)
T PRK15064 60 LDPN-------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAE 132 (530)
T ss_pred ecCC-------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHH
Confidence 9873 359999999999999999999986421 0 00000 0001223
Q ss_pred HHHHHHHHHcCCCccc-cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 005545 211 EQAEMVIMELGLTRCR-NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289 (691)
Q Consensus 211 ~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~t 289 (691)
++++++++.+||.+.. +..+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|
T Consensus 133 ~~~~~~l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~t 204 (530)
T PRK15064 133 ARAGELLLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNST 204 (530)
T ss_pred HHHHHHHHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCe
Confidence 5688899999997543 3333 46999999999999999999999999999999999999999999864 5899
Q ss_pred EEEEeCCCchHHHhcCCEEEEecCCeE-EEecCHhHHHH
Q 005545 290 VITTIHQPSSRLYRMFDKVVVLSEGSP-IYSGRAAQVMD 327 (691)
Q Consensus 290 ii~~~H~p~~~i~~~~D~v~~L~~G~i-v~~G~~~~~~~ 327 (691)
||++||++. .+.++||++++|++|++ ++.|++++..+
T Consensus 205 iiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 205 MIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 999999964 57899999999999999 48898887654
No 319
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-36 Score=319.83 Aligned_cols=204 Identities=28% Similarity=0.422 Sum_probs=163.4
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
.+..|+++|+++. . +.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+
T Consensus 36 ~~~~l~i~nls~~-~----------------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-~p~~ 91 (282)
T cd03291 36 DDNNLFFSNLCLV-G----------------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSE 91 (282)
T ss_pred CCCeEEEEEEEEe-c----------------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCC
Confidence 4456999999984 1 24899999999999999999999999999999999987 5779
Q ss_pred eEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccc
Q 005545 156 GKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-------RNS 228 (691)
Q Consensus 156 G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~ 228 (691)
|+|.++| .++|++|++.+++. ||+||+.+.... ... ++.+.++.+++.+. .++
T Consensus 92 G~I~i~g---------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 92 GKIKHSG---------RISFSSQFSWIMPG-TIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred cEEEECC---------EEEEEeCccccccc-CHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccc
Confidence 9999998 39999999988875 999999864211 111 12233333444321 222
Q ss_pred cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL-RGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
.++. ..+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ ++++ ++.|||++||++.. + ..||+
T Consensus 152 ~~~~-~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~ 227 (282)
T cd03291 152 VLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADK 227 (282)
T ss_pred eecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCE
Confidence 3321 34579999999999999999999999999999999999999999865 5664 47899999999754 4 68999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
+++|++|++++.|+++++..
T Consensus 228 i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 228 ILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988743
No 320
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-36 Score=349.65 Aligned_cols=213 Identities=26% Similarity=0.374 Sum_probs=176.1
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
+++|+++||+++|.. .+.+|+|+||+|++||+++|+|||||||||||++|+|.+ ++++|
T Consensus 4 ~~~l~i~~l~~~y~~--------------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~-~p~~G 62 (556)
T PRK11819 4 QYIYTMNRVSKVVPP--------------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFEG 62 (556)
T ss_pred cEEEEEeeEEEEeCC--------------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCc
Confidence 467999999999851 135999999999999999999999999999999999987 46799
Q ss_pred EEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh-hc------------CCCCCC------------------
Q 005545 157 KITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAAL-LR------------LPKKLT------------------ 205 (691)
Q Consensus 157 ~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~-~~------------~~~~~~------------------ 205 (691)
+|.+++ ...+|||+|++.+++.+||.||+.++.. .+ ......
T Consensus 63 ~i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (556)
T PRK11819 63 EARPAP-------GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDA 135 (556)
T ss_pred eEEecC-------CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHh
Confidence 999975 2469999999999999999999987531 00 000000
Q ss_pred --HHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005545 206 --REEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283 (691)
Q Consensus 206 --~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l 283 (691)
..+..++++++++.+||.. .++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 136 ~~~~~~~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~ 209 (556)
T PRK11819 136 ADAWDLDSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY 209 (556)
T ss_pred cCccchHHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC
Confidence 0012356788999999963 55555 469999999999999999999999999999999999999999999987
Q ss_pred HhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHHH
Q 005545 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVMD 327 (691)
Q Consensus 284 ~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 327 (691)
. .|||++||++ ..+.++||+|++|++|+++ +.|+.++..+
T Consensus 210 ~---~tviiisHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 210 P---GTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred C---CeEEEEeCCH-HHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence 3 4999999996 4578899999999999986 8888776543
No 321
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.9e-37 Score=385.18 Aligned_cols=214 Identities=27% Similarity=0.373 Sum_probs=182.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+|+||+|+|+.. ...+|+||||+|++||.+||+|+||||||||+++|.|++ .+.+|+|
T Consensus 1308 ~I~f~nVsf~Y~~~-------------------~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I 1367 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG-------------------LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEI 1367 (1560)
T ss_pred eEEEEEEEEEeCCC-------------------CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence 59999999999732 134999999999999999999999999999999999977 4779999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 227 (691)
++||.++.+ .+|+.++|||||+.+|+. ||+|||... ...+.+ .+.++++..|| ++..|
T Consensus 1368 ~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sde----eI~~Al~~a~l~~~I~~lp~Gld 1436 (1560)
T PTZ00243 1368 RVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASSA----EVWAALELVGLRERVASESEGID 1436 (1560)
T ss_pred EECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCCHH----HHHHHHHHCCChHHHhhCccccc
Confidence 999999864 678999999999999975 999999532 122332 45556666655 34578
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVN-PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~-P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
+.+|+ ....||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++..+ ++|+|+++|+++ ....||
T Consensus 1437 t~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl~--ti~~~D 1512 (1560)
T PTZ00243 1437 SRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRLH--TVAQYD 1512 (1560)
T ss_pred ccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccHH--HHHhCC
Confidence 88875 3456999999999999999996 899999999999999999999999998654 799999999974 357899
Q ss_pred EEEEecCCeEEEecCHhHHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~ 327 (691)
+|++|++|++++.|+++++++
T Consensus 1513 rIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1513 KIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999964
No 322
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4e-37 Score=386.53 Aligned_cols=214 Identities=22% Similarity=0.305 Sum_probs=182.6
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+|+||+++|+.. ...+|+|+|++|++||.+||+|+||||||||+++|.|++ .+.+|+|
T Consensus 1284 ~I~f~nVsf~Y~~~-------------------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I 1343 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-------------------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEI 1343 (1522)
T ss_pred cEEEEEEEEEeCCC-------------------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeE
Confidence 59999999999732 125999999999999999999999999999999999976 4679999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~ 227 (691)
.+||.++.+ .+|+++++||||+.+|+. |++|||.... ..++++ +.++++..++ ++..|
T Consensus 1344 ~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLd 1412 (1522)
T TIGR00957 1344 IIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLD 1412 (1522)
T ss_pred EECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCC
Confidence 999999864 578999999999999976 9999996211 223333 4445555554 35678
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|+|+++|+++. ...+||
T Consensus 1413 t~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~-~~TvI~IAHRl~t--i~~~Dr 1488 (1522)
T TIGR00957 1413 HECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE-DCTVLTIAHRLNT--IMDYTR 1488 (1522)
T ss_pred ceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCE
Confidence 88875 3456999999999999999999999999999999999999999999998754 7999999999754 467999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++++.|+++++++
T Consensus 1489 IlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1489 VIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999975
No 323
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.7e-37 Score=348.05 Aligned_cols=216 Identities=22% Similarity=0.334 Sum_probs=173.7
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
...|+++||+++|+. +.+|+|+||++++||+++|+||||||||||+|+|+|..+++.+|
T Consensus 258 ~~~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G 316 (490)
T PRK10938 258 EPRIVLNNGVVSYND---------------------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSN 316 (490)
T ss_pred CceEEEeceEEEECC---------------------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCC
Confidence 356999999999851 34899999999999999999999999999999999965322599
Q ss_pred EEEECCEeCCh-----hccccEEEEccCCCCCC--CCCHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cc
Q 005545 157 KITYNGRQFSS-----SLKRKTGFVTQDDVLYP--HLTVLETLSYAALL--RLPKKLTREEKIEQAEMVIMELGLTR-CR 226 (691)
Q Consensus 157 ~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~--~lTV~E~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 226 (691)
+|+++|+++.. ..++.++|++|++.++. ..|+++++.++... ....... .+.+++++++++.+||.+ ..
T Consensus 317 ~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~ 395 (490)
T PRK10938 317 DLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTA 395 (490)
T ss_pred eEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhc
Confidence 99999987532 23567999999876543 35777776543211 1111112 223457889999999986 66
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCCCchHHHh-c
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG-RTVITTIHQPSSRLYR-M 304 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~~H~p~~~i~~-~ 304 (691)
++.+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++. ++.+ +
T Consensus 396 ~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~ 469 (490)
T PRK10938 396 DAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACI 469 (490)
T ss_pred cCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhh
Confidence 7665 4699999999999999999999999999999999999999999999998775 47999999965 4655 6
Q ss_pred CCEEEEecCCeEEEec
Q 005545 305 FDKVVVLSEGSPIYSG 320 (691)
Q Consensus 305 ~D~v~~L~~G~iv~~G 320 (691)
+|++++|++|++++.-
T Consensus 470 ~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 470 THRLEFVPDGDIYRYV 485 (490)
T ss_pred heeEEEecCCceEEee
Confidence 9999999999988653
No 324
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-37 Score=297.94 Aligned_cols=221 Identities=28% Similarity=0.464 Sum_probs=192.3
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
+..|+.+||++++. ...+|+|+||++.+||+-+|||||||||||++++|+|.. .|.+|
T Consensus 3 ~~iL~~~~vsVsF~---------------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt-rp~~G 60 (249)
T COG4674 3 PIILYLDGVSVSFG---------------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT-RPQEG 60 (249)
T ss_pred CceEEEeceEEEEc---------------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC-CCCcc
Confidence 35789999999987 245899999999999999999999999999999999965 57799
Q ss_pred EEEECC-EeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHHcCCCcc
Q 005545 157 KITYNG-RQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-----KLTREEKIEQAEMVIMELGLTRC 225 (691)
Q Consensus 157 ~I~~~G-~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~ 225 (691)
+++++| .++.+ ..|..||--||.|..|+.+||+|||..+.....+- .....+.+++++++|+..||.+.
T Consensus 61 ~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~ 140 (249)
T COG4674 61 EVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE 140 (249)
T ss_pred eEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh
Confidence 999999 77753 24668999999999999999999999875321100 01123445689999999999999
Q ss_pred ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~ 305 (691)
++...+ .||.||||++.|++-++.+|++|+||||++|+--....+.-++|++++. +.+|+++.||+ ..+.+++
T Consensus 141 ~~~~A~-----~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM-~Fvr~~A 213 (249)
T COG4674 141 RDRLAA-----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDM-GFVREIA 213 (249)
T ss_pred hhhhhh-----hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccH-HHHHHhh
Confidence 988776 4999999999999999999999999999999999999999999999987 48999999996 5689999
Q ss_pred CEEEEecCCeEEEecCHhHHH
Q 005545 306 DKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 306 D~v~~L~~G~iv~~G~~~~~~ 326 (691)
|+|.+|++|.+...|+.+++.
T Consensus 214 ~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 214 DKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred heeEEEeccceeecccHHHhh
Confidence 999999999999999999884
No 325
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=313.16 Aligned_cols=243 Identities=26% Similarity=0.400 Sum_probs=195.0
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.+..+||+..|.................+.++....+++|+||+|++|++++++|||||||||+||+|+|++ .|.+|.|
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll-~p~~G~v 81 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL-LPTSGKV 81 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc-ccCCCeE
Confidence 567888888776432211000000000111223345899999999999999999999999999999999987 4779999
Q ss_pred EECCEeCCh---hccccEEEEc-cCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 159 TYNGRQFSS---SLKRKTGFVT-QDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 159 ~~~G~~~~~---~~~~~igyv~-Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
.++|.+.-. .+-+.+++|+ |.-.+...+-+.|.+...... .+++.++..++.+.+.+.++|+...+.++
T Consensus 82 ~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~I---y~Ipd~~F~~r~~~l~eiLdl~~~lk~~v---- 154 (325)
T COG4586 82 RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLI---YEIPDDEFAERLDFLTEILDLEGFLKWPV---- 154 (325)
T ss_pred EecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHH---HhCCHHHHHHHHHHHHHHhcchhhhhhhh----
Confidence 999986532 3445788876 445566667788877654333 35677888899999999999998887766
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
|.||-|||.|+.||.+|+++|+||||||||-|||..++.+|.+.|++..+ ++.||+.+||+.. .+..+||||++|+.
T Consensus 155 -r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~ 232 (325)
T COG4586 155 -RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ 232 (325)
T ss_pred -hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC
Confidence 67999999999999999999999999999999999999999999999986 5899999999965 68899999999999
Q ss_pred CeEEEecCHhHHHHHhhh
Q 005545 314 GSPIYSGRAAQVMDYFGS 331 (691)
Q Consensus 314 G~iv~~G~~~~~~~~f~~ 331 (691)
|+++|+|+.+++.+-|..
T Consensus 233 Gqlv~dg~l~~l~~~f~~ 250 (325)
T COG4586 233 GQLVFDGTLAQLQEQFGP 250 (325)
T ss_pred CcEeecccHHHHHHHhCC
Confidence 999999999999876654
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.7e-37 Score=381.93 Aligned_cols=213 Identities=24% Similarity=0.408 Sum_probs=172.7
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||+|+|+.. ..+.+|+|+||+|++||++||+||||||||||+++|+|++ .|.+|+|
T Consensus 382 ~I~~~nVsf~Y~~~------------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I 442 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR------------------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-DPTEGDI 442 (1466)
T ss_pred cEEEEEEEEEcCCC------------------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-cCCCCeE
Confidence 69999999999731 1235999999999999999999999999999999999977 5789999
Q ss_pred EEC-CEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhh-cC--------CC------C---------------
Q 005545 159 TYN-GRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALL-RL--------PK------K--------------- 203 (691)
Q Consensus 159 ~~~-G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~-~~--------~~------~--------------- 203 (691)
+++ |.++.. .+|+.||||+|++.+|+ .||+|||.++... +. .. .
T Consensus 443 ~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1466)
T PTZ00265 443 IINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGD 521 (1466)
T ss_pred EEeCCcchhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccch
Confidence 994 677642 46788999999999997 5999999986310 00 00 0
Q ss_pred ---------C---------CHHHHHHHHHHHHHHcCC-------CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCE
Q 005545 204 ---------L---------TREEKIEQAEMVIMELGL-------TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSC 258 (691)
Q Consensus 204 ---------~---------~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~i 258 (691)
. ......+.+.++++.+++ ++..||.+|. ....||||||||++|||||+.+|+|
T Consensus 522 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~I 600 (1466)
T PTZ00265 522 LNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKI 600 (1466)
T ss_pred hhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 0 000112346666666654 4556788875 3567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 259 LLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 259 LlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
||||||||+||+.++..+.+.|+++++ +|+|+|+++|+++. + +.||+|++|++|
T Consensus 601 LlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 601 LILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 999999999999999999999999986 58999999999753 4 789999999986
No 327
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-37 Score=311.43 Aligned_cols=195 Identities=27% Similarity=0.424 Sum_probs=167.6
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..++.+||++.|+...+ +. +.....+++||||+|++||+++|+|+||||||||-|+|.|+. .|++|+
T Consensus 3 ~ll~v~~l~k~f~~~~~---~~---------~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~pt~G~ 69 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG---FG---------KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-EPTSGE 69 (268)
T ss_pred ceEEEeccEEEEecccc---cC---------cccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-CCCCce
Confidence 46899999999985421 10 111357999999999999999999999999999999999977 578999
Q ss_pred EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCc
Q 005545 158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFR 236 (691)
Q Consensus 158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 236 (691)
|+++|+++.... +++..+++.++|+.+||.. ..++ ++.
T Consensus 70 i~f~g~~i~~~~------------------------------------~~~~~~~v~elL~~Vgl~~~~~~r-----yPh 108 (268)
T COG4608 70 ILFEGKDITKLS------------------------------------KEERRERVLELLEKVGLPEEFLYR-----YPH 108 (268)
T ss_pred EEEcCcchhhcc------------------------------------hhHHHHHHHHHHHHhCCCHHHhhc-----CCc
Confidence 999998864311 3455678999999999865 3333 446
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
++|||||||++|||||+.+|+++++|||+|+||...+.+++++|++++++ |.|.++++||. ..+..++||+.+|..|+
T Consensus 109 elSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~ 187 (268)
T COG4608 109 ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGK 187 (268)
T ss_pred ccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCc
Confidence 89999999999999999999999999999999999999999999999975 99999999996 46899999999999999
Q ss_pred EEEecCHhHHHH
Q 005545 316 PIYSGRAAQVMD 327 (691)
Q Consensus 316 iv~~G~~~~~~~ 327 (691)
+|+.|+.++++.
T Consensus 188 iVE~g~~~~~~~ 199 (268)
T COG4608 188 IVEIGPTEEVFS 199 (268)
T ss_pred eeEecCHHHHhh
Confidence 999999999964
No 328
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.6e-37 Score=350.36 Aligned_cols=210 Identities=19% Similarity=0.275 Sum_probs=171.3
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+|+|+.++. .++.+|+|+|+++++||.+||+||||||||||+++|+|.. .|.+|+
T Consensus 336 ~~i~~~~v~f~y~~~~~----------------~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~-~p~~G~ 398 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEG----------------SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY-IPQEGE 398 (555)
T ss_pred ceEEEEEEEEEeCCCCC----------------CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcE
Confidence 46999999999973210 0135899999999999999999999999999999999977 578999
Q ss_pred EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-C
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG-G 232 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~ 232 (691)
|.+||.++.+ .+++.++||+||+.+|.. |++||+. + . ..+++++++++.+++.+..+.... -
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-~----~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-H----ASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc-------c-c----hhHHHHHHHHHHcCCchhhccccccc
Confidence 9999999863 467889999999998864 7888731 1 1 123457788899988765433221 1
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR-GLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~-~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
.....||||||||++|||||+.+|++|+|||||++||+.++..+.+.+. .+..+|+|+|+++|+++ ..+.||+|++|
T Consensus 466 ~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l 543 (555)
T TIGR01194 466 STTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKL 543 (555)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEE
Confidence 1225699999999999999999999999999999999999999998664 56566899999999974 45799999999
Q ss_pred cCCeEEEe
Q 005545 312 SEGSPIYS 319 (691)
Q Consensus 312 ~~G~iv~~ 319 (691)
++|++++.
T Consensus 544 ~~G~i~~~ 551 (555)
T TIGR01194 544 AAGCIVKD 551 (555)
T ss_pred ECCEEEEe
Confidence 99999864
No 329
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.1e-36 Score=306.49 Aligned_cols=194 Identities=22% Similarity=0.231 Sum_probs=160.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE-ECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT-YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLS 193 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~-~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~ 193 (691)
+|+||||+|++||+++|+||||||||||+|+|+|+. ++.+|+|. ++|..+ .+.+++.+++.+|++||+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDAL---------PLGANSFILPGLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCcee---------ccccccccCCcCcHHHHHH
Confidence 799999999999999999999999999999999976 47899997 777533 1234667889999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005545 194 YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273 (691)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~ 273 (691)
+..... ....++. .+.+.+.++|+...++.++ .||||||||++||++|+.+|+++||||||++||+.++
T Consensus 72 ~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 72 MMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 865432 1222222 2234456778777777664 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhh
Q 005545 274 QRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGS 331 (691)
Q Consensus 274 ~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 331 (691)
..+.+.|.+..+ ++|+|++||++. .+.++||++++|++|++++.|+.+++.++++.
T Consensus 141 ~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 141 LRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999998865443 468999999975 57789999999999999999999999877654
No 330
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=345.83 Aligned_cols=204 Identities=23% Similarity=0.398 Sum_probs=173.7
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|.. +.+|+|+||+|++||+++|+||||||||||+|+|+|++ .+.+|+
T Consensus 318 ~~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~ 375 (530)
T PRK15064 318 NALEVENLTKGFDN---------------------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPDSGT 375 (530)
T ss_pred ceEEEEeeEEeeCC---------------------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeE
Confidence 47999999999851 34899999999999999999999999999999999977 467999
Q ss_pred EEECCEeCChhccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 005545 158 ITYNGRQFSSSLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVGGPL 234 (691)
Q Consensus 158 I~~~G~~~~~~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 234 (691)
|.++|+ +.+||++|++. +++.+||+|++.+.. . . . ..+++++++++.+|+. +..++.+
T Consensus 376 i~~~~~-------~~i~~~~q~~~~~~~~~~t~~~~~~~~~--~-~-~----~~~~~~~~~l~~~~l~~~~~~~~~---- 436 (530)
T PRK15064 376 VKWSEN-------ANIGYYAQDHAYDFENDLTLFDWMSQWR--Q-E-G----DDEQAVRGTLGRLLFSQDDIKKSV---- 436 (530)
T ss_pred EEECCc-------eEEEEEcccccccCCCCCcHHHHHHHhc--c-C-C----ccHHHHHHHHHHcCCChhHhcCcc----
Confidence 999873 46999999864 566799999986421 0 1 1 1234678899999994 5666665
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+ ..+.++||++++|++|
T Consensus 437 -~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g 511 (530)
T PRK15064 437 -KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPD 511 (530)
T ss_pred -cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999987 35999999996 4678899999999999
Q ss_pred eEE-EecCHhHHHH
Q 005545 315 SPI-YSGRAAQVMD 327 (691)
Q Consensus 315 ~iv-~~G~~~~~~~ 327 (691)
+++ +.|+++++.+
T Consensus 512 ~i~~~~g~~~~~~~ 525 (530)
T PRK15064 512 GVVDFSGTYEEYLR 525 (530)
T ss_pred eEEEcCCCHHHHHH
Confidence 998 8898887654
No 331
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-37 Score=306.14 Aligned_cols=219 Identities=28% Similarity=0.488 Sum_probs=185.5
Q ss_pred ccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 005545 75 LHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF 154 (691)
Q Consensus 75 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~ 154 (691)
..+..|+++||+.++. +|+||+|+|++|++||-.+|+|||||||||||++++|.. ++.
T Consensus 27 ~~~~li~l~~v~v~r~---------------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~-~ps 84 (257)
T COG1119 27 INEPLIELKNVSVRRN---------------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH-PPS 84 (257)
T ss_pred CCcceEEecceEEEEC---------------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc-CCC
Confidence 3556799999999987 357999999999999999999999999999999999966 456
Q ss_pred ceEEEECCEeCCh-----hccccEEEEccC--CCCCCCCCHHHHHHHH--HhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545 155 SGKITYNGRQFSS-----SLKRKTGFVTQD--DVLYPHLTVLETLSYA--ALLRLPKKLTREEKIEQAEMVIMELGLTRC 225 (691)
Q Consensus 155 ~G~I~~~G~~~~~-----~~~~~igyv~Q~--~~l~~~lTV~E~l~~~--~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 225 (691)
+|.+.+.|+...+ ++|++||+|.-. ..+.+..+|+|-+.-+ +..........++..+++..+++.+|+.+.
T Consensus 85 sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l 164 (257)
T COG1119 85 SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL 164 (257)
T ss_pred CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh
Confidence 9999999998743 578999999743 3455677888876522 222222212334556788999999999999
Q ss_pred ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCCCchHHHh
Q 005545 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG--GRTVITTIHQPSSRLYR 303 (691)
Q Consensus 226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~~~H~p~~~i~~ 303 (691)
+|+..+ .||-||||||-|||||+.+|++||||||++|||...++.+++.|.+++.. +.++|++||+. +++-.
T Consensus 165 a~r~~~-----~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~ 238 (257)
T COG1119 165 ADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPP 238 (257)
T ss_pred ccCchh-----hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhccc
Confidence 988775 59999999999999999999999999999999999999999999999865 88999999996 56889
Q ss_pred cCCEEEEecCCeEEEecC
Q 005545 304 MFDKVVVLSEGSPIYSGR 321 (691)
Q Consensus 304 ~~D~v~~L~~G~iv~~G~ 321 (691)
.+++++++++|+++++|.
T Consensus 239 ~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 239 CFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred ccceEEEeeCCceeeccc
Confidence 999999999999999874
No 332
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.3e-36 Score=345.74 Aligned_cols=212 Identities=26% Similarity=0.374 Sum_probs=173.2
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
.+|+++||+++|+. .+.+|+|+||+|++||+++|+|||||||||||++|+|+. ++++|+
T Consensus 3 ~~i~~~nls~~~~~--------------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~-~p~~G~ 61 (552)
T TIGR03719 3 YIYTMNRVSKVVPP--------------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFNGE 61 (552)
T ss_pred EEEEEeeEEEecCC--------------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCce
Confidence 36899999999851 135899999999999999999999999999999999977 467999
Q ss_pred EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh-c------------CCCCCCHH-----------------
Q 005545 158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL-R------------LPKKLTRE----------------- 207 (691)
Q Consensus 158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~-~------------~~~~~~~~----------------- 207 (691)
|.+++ +..+|||+|++.+++.+||+||+.++... + ........
T Consensus 62 i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (552)
T TIGR03719 62 ARPAP-------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAA 134 (552)
T ss_pred EEecC-------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhc
Confidence 99975 24699999999999999999999875311 0 00000000
Q ss_pred ---HHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005545 208 ---EKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284 (691)
Q Consensus 208 ---~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~ 284 (691)
+..++++++++.+|+.. .++.+ ..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++
T Consensus 135 ~~~~~~~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~- 207 (552)
T TIGR03719 135 DAWDLDRKLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY- 207 (552)
T ss_pred CcchhHHHHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC-
Confidence 01235667788888853 45544 469999999999999999999999999999999999999999999886
Q ss_pred hCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHHH
Q 005545 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVMD 327 (691)
Q Consensus 285 ~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 327 (691)
+.|||++||++ ..+..+||++++|++|+++ +.|+.++..+
T Consensus 208 --~~tvIiisHd~-~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 208 --PGTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred --CCeEEEEeCCH-HHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 35999999996 4678899999999999976 7888887654
No 333
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.7e-36 Score=378.10 Aligned_cols=213 Identities=25% Similarity=0.321 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+|+||+++|+.. .+.+|+|+||+|++||.+||+|+||||||||+++|.|+.. .+|+|
T Consensus 1217 ~I~f~nVs~~Y~~~-------------------~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I 1275 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEA-------------------GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEI 1275 (1490)
T ss_pred eEEEEEEEEEeCCC-------------------CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEE
Confidence 69999999999732 1359999999999999999999999999999999999763 59999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccc
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-------RCRN 227 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~ 227 (691)
++||.++.. .+|++++|||||+.+|+. ||+|||.... ..+. +.+.++++..+|. +..|
T Consensus 1276 ~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLd 1344 (1490)
T TIGR01271 1276 QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLD 1344 (1490)
T ss_pred EECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCccccc
Confidence 999999864 578899999999999975 9999995321 1222 3455667776663 4578
Q ss_pred ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|||+++|+++. ...||+
T Consensus 1345 t~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~t--i~~~Dr 1420 (1490)
T TIGR01271 1345 FVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEA--LLECQQ 1420 (1490)
T ss_pred ccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCE
Confidence 88875 3456999999999999999999999999999999999999999999998754 7999999999753 467999
Q ss_pred EEEecCCeEEEecCHhHHHH
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~~L~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++++.|+++++++
T Consensus 1421 IlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1421 FLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred EEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999864
No 334
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.6e-36 Score=309.21 Aligned_cols=179 Identities=25% Similarity=0.270 Sum_probs=151.1
Q ss_pred eeeceEEEEe-----CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHH
Q 005545 115 VLNGVSGMVK-----PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVL 189 (691)
Q Consensus 115 iL~~vs~~i~-----~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~ 189 (691)
.++|++++++ +||+++|+||||||||||+++|+|.+ ++.+|+|.++|. .++|++|+....+.+||+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-~p~~G~i~~~g~--------~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELD--------TVSYKPQYIKADYEGTVR 79 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCc--------eEEEecccccCCCCCCHH
Confidence 5666666665 79999999999999999999999977 477999999984 599999998877789999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545 190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269 (691)
Q Consensus 190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD 269 (691)
|++.+..... . . .....+++++.++|.+..++.+ ..|||||||||+||++|+.+|++++|||||++||
T Consensus 80 e~l~~~~~~~---~-~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 80 DLLSSITKDF---Y-T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHhhhc---c-c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9987643211 0 1 1124577899999987777665 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 270 STTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 270 ~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
+.++..+.+.|+++++ .|+|||++||++. .+..+||++++|+++.
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEP 193 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCC
Confidence 9999999999999986 4899999999964 5778999999997643
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2e-35 Score=339.50 Aligned_cols=206 Identities=24% Similarity=0.357 Sum_probs=170.1
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
...|+++||+++|.. +.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|
T Consensus 322 ~~~l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G 379 (556)
T PRK11819 322 DKVIEAENLSKSFGD---------------------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE-QPDSG 379 (556)
T ss_pred CeEEEEEeEEEEECC---------------------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCe
Confidence 357999999999851 35999999999999999999999999999999999977 47799
Q ss_pred EEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 005545 157 KITYNGRQFSSSLKRKTGFVTQDD-VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPL 234 (691)
Q Consensus 157 ~I~~~G~~~~~~~~~~igyv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 234 (691)
+|.+++. ..+||++|++ .+++.+||+|++.+..... ..... ...++++++.+|+.+ ..++.+
T Consensus 380 ~i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~---- 443 (556)
T PRK11819 380 TIKIGET-------VKLAYVDQSRDALDPNKTVWEEISGGLDII---KVGNR--EIPSRAYVGRFNFKGGDQQKKV---- 443 (556)
T ss_pred EEEECCc-------eEEEEEeCchhhcCCCCCHHHHHHhhcccc---ccccc--HHHHHHHHHhCCCChhHhcCch----
Confidence 9999542 2599999996 6888999999998764221 11111 123457899999964 456655
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC-
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE- 313 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~- 313 (691)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+. .+..+||++++|++
T Consensus 444 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~ 518 (556)
T PRK11819 444 -GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGD 518 (556)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999973 4 8999999964 67889999999986
Q ss_pred CeEE-EecCHhHH
Q 005545 314 GSPI-YSGRAAQV 325 (691)
Q Consensus 314 G~iv-~~G~~~~~ 325 (691)
|++. +.|+.++.
T Consensus 519 g~~~~~~g~~~~~ 531 (556)
T PRK11819 519 SQVEWFEGNFQEY 531 (556)
T ss_pred CeEEEecCCHHHH
Confidence 7876 56665543
No 336
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=321.17 Aligned_cols=220 Identities=33% Similarity=0.482 Sum_probs=187.3
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
.+-.+.|+||+|.|.. .+++|+++||++++|+.+|++||||+||||++++|-..+ ...+
T Consensus 259 ~~g~v~F~~V~F~y~~--------------------~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy-D~~s 317 (497)
T COG5265 259 RLGAVAFINVSFAYDP--------------------RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY-DVNS 317 (497)
T ss_pred ccceEEEEEEEeeccc--------------------cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh-CCcC
Confidence 3446899999999973 357999999999999999999999999999999999866 4679
Q ss_pred eEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccc
Q 005545 156 GKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-----AEMVIMELGLTRCR 226 (691)
Q Consensus 156 G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~ 226 (691)
|.|.+||+++.. .+|+-||.||||..||. -|...|+.|+.. ..+.++..+. +.+.++ .+++..
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~--~lP~gy 389 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQ--SLPEGY 389 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHH--hCchhh
Confidence 999999999853 57889999999999985 599999988642 3344444332 333444 357889
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
++.||.... .|||||||||+|||+++.+|+||++||.||+||..+.++|...|+++++ |+|.+++.|..+. .--+|
T Consensus 390 ~t~Vgergl-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~-~rttlviahrlst--i~~ad 465 (497)
T COG5265 390 DTGVGERGL-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRLST--IIDAD 465 (497)
T ss_pred hcccchhee-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC-CCeEEEEeehhhh--ccCCc
Confidence 999997332 3899999999999999999999999999999999999999999999984 8999999999765 35699
Q ss_pred EEEEecCCeEEEecCHhHHHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~~ 328 (691)
+|++|++|+|++.|.+++++..
T Consensus 466 eiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 466 EIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred eEEEeeCCEEEecCcHHHHHHc
Confidence 9999999999999999999864
No 337
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.4e-35 Score=339.06 Aligned_cols=198 Identities=26% Similarity=0.312 Sum_probs=170.7
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
+..|+++|++++|.. ..|+++|++|++||+++|+||||||||||+|+|+|++ ++++|
T Consensus 338 ~~~l~~~~ls~~~~~----------------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~-~p~~G 394 (590)
T PRK13409 338 ETLVEYPDLTKKLGD----------------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEG 394 (590)
T ss_pred ceEEEEcceEEEECC----------------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCce
Confidence 457999999998851 2489999999999999999999999999999999987 47799
Q ss_pred EEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545 157 KITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 157 ~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 236 (691)
+|.++ ..++|++|+..+++.+||+|++.+.... ... ...++++++.++|.+..++.++
T Consensus 395 ~I~~~---------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~----- 452 (590)
T PRK13409 395 EVDPE---------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK----- 452 (590)
T ss_pred EEEEe---------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----
Confidence 99986 1599999998888899999999875321 111 1246789999999877777664
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+..+||++++|+ |+
T Consensus 453 ~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~ 530 (590)
T PRK13409 453 DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GE 530 (590)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Cc
Confidence 69999999999999999999999999999999999999999999999874 899999999964 5788999999996 58
Q ss_pred EEEecC
Q 005545 316 PIYSGR 321 (691)
Q Consensus 316 iv~~G~ 321 (691)
+...|.
T Consensus 531 ~~~~g~ 536 (590)
T PRK13409 531 PGKHGH 536 (590)
T ss_pred ceeeee
Confidence 877775
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4e-35 Score=336.76 Aligned_cols=205 Identities=24% Similarity=0.374 Sum_probs=169.3
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||+++|.. +.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+
T Consensus 321 ~~l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~ 378 (552)
T TIGR03719 321 KVIEAENLSKGFGD---------------------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE-QPDSGT 378 (552)
T ss_pred eEEEEeeEEEEECC---------------------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeE
Confidence 46999999999851 35999999999999999999999999999999999977 467999
Q ss_pred EEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 005545 158 ITYNGRQFSSSLKRKTGFVTQDD-VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLF 235 (691)
Q Consensus 158 I~~~G~~~~~~~~~~igyv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 235 (691)
|.+++. ..+||++|++ .+++.+||.|++.++.... ..... ..+++++++.+||.+ ..++.+
T Consensus 379 i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~----- 441 (552)
T TIGR03719 379 IKIGET-------VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKV----- 441 (552)
T ss_pred EEECCc-------eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCch-----
Confidence 999542 2599999996 4788899999998764221 11111 123557899999964 456655
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC-C
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE-G 314 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~-G 314 (691)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+ ..+.++||++++|++ |
T Consensus 442 ~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~ 517 (552)
T TIGR03719 442 GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDS 517 (552)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCC
Confidence 4699999999999999999999999999999999999999999999983 3 899999996 467889999999986 5
Q ss_pred eEE-EecCHhHH
Q 005545 315 SPI-YSGRAAQV 325 (691)
Q Consensus 315 ~iv-~~G~~~~~ 325 (691)
+++ +.|+.++.
T Consensus 518 ~~~~~~g~~~~~ 529 (552)
T TIGR03719 518 HVEWFEGNYSEY 529 (552)
T ss_pred eEEEeCCCHHHH
Confidence 876 55665443
No 339
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-35 Score=281.35 Aligned_cols=228 Identities=25% Similarity=0.417 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||++++....+ ++ +.....+++.|||+++.|+.+||+|.||||||||.|+|+|.+ +|++|+|
T Consensus 4 LLeV~nLsKtF~~~~~---lf---------~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~i 70 (267)
T COG4167 4 LLEVRNLSKTFRYRTG---LF---------RRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEI 70 (267)
T ss_pred hhhhhhhhhhhhhhhh---hh---------hhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceE
Confidence 4788999888874321 11 112346899999999999999999999999999999999987 5789999
Q ss_pred EECCEeCCh---hc-cccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 005545 159 TYNGRQFSS---SL-KRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVG 231 (691)
Q Consensus 159 ~~~G~~~~~---~~-~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 231 (691)
++||+++.- .. .+.|-+++||+. +.|.+.+.+-|.... ++..++..+++.+++.+.|+.+||- +.++-.
T Consensus 71 l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-- 146 (267)
T COG4167 71 LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-- 146 (267)
T ss_pred EECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccccc--
Confidence 999998842 23 357999999986 889999988887764 4456778888999999999999984 445443
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEE
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
+..||-||||||++||||+.+|+|++.||...+||...+.+++++.-+|++ .|.+-|.++.+. ..+..++|+|+|
T Consensus 147 ---~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viV 222 (267)
T COG4167 147 ---PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLV 222 (267)
T ss_pred ---hhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEE
Confidence 357999999999999999999999999999999999999999999999997 499999999885 468999999999
Q ss_pred ecCCeEEEecCHhHHHH
Q 005545 311 LSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 311 L~~G~iv~~G~~~~~~~ 327 (691)
|++|++++.|++.+++.
T Consensus 223 M~EG~vvE~G~t~~v~a 239 (267)
T COG4167 223 MHEGEVVERGSTADVLA 239 (267)
T ss_pred EecCceeecCChhhhhc
Confidence 99999999999998854
No 340
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-34 Score=290.09 Aligned_cols=237 Identities=23% Similarity=0.306 Sum_probs=196.6
Q ss_pred eEEEEEeEEEEEccCCCCC-ccccc--CCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 005545 78 VTLKFEDVAYSINLHTSKG-SCFAT--SHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF 154 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~ 154 (691)
+.|+++||+..++....+. ..... ..-.+........+|+||||++++||.+||+|+||||||||||+|+|.+ +|+
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~Pt 80 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-KPT 80 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-CCC
Confidence 4689999999998653211 00000 0001112455678999999999999999999999999999999999977 578
Q ss_pred ceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 155 SGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 155 ~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
+|+|.++|+-..- +--.. .+.|.+|.+||+.+-+.+. ++++++.+++++++++--+|.+..|.++
T Consensus 81 ~G~v~v~G~v~~l-i~lg~-------Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv---- 145 (249)
T COG1134 81 SGKVKVTGKVAPL-IELGA-------GFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV---- 145 (249)
T ss_pred CceEEEcceEehh-hhccc-------CCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch----
Confidence 9999999963211 11112 3456799999999866542 5678999999999999999999999877
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
+.+|-||+-|++.|.+...+|+|||+||-.+--|+.-++...+.++++.++++|||++|||+ ..+.++||++++|++|
T Consensus 146 -ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 146 -KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHG 223 (249)
T ss_pred -hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCC
Confidence 67999999999999999999999999999999999999999999999988889999999996 5699999999999999
Q ss_pred eEEEecCHhHHHHHhhhc
Q 005545 315 SPIYSGRAAQVMDYFGSI 332 (691)
Q Consensus 315 ~iv~~G~~~~~~~~f~~~ 332 (691)
++.+.|+++++.++|...
T Consensus 224 ~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 224 QIRMEGSPEEVIPAYEED 241 (249)
T ss_pred EEEEcCCHHHHHHHHHHh
Confidence 999999999999988764
No 341
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.5e-35 Score=306.36 Aligned_cols=189 Identities=26% Similarity=0.380 Sum_probs=158.5
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE-----------ECCEeCCh---hcc---ccEEEE
Q 005545 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT-----------YNGRQFSS---SLK---RKTGFV 176 (691)
Q Consensus 114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~-----------~~G~~~~~---~~~---~~igyv 176 (691)
.+|+|+| .+++||+++|+||||||||||||+|+|++ ++++|+|. ++|+++.. ..+ ..++|+
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~-~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKL-KPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 4899999 59999999999999999999999999987 57799996 78887643 111 247899
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCC
Q 005545 177 TQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNP 256 (691)
Q Consensus 177 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P 256 (691)
+|+..+++. ++.+++.+.. + .....+.+.++++.+||.+..++.+ +.||||||||++||++|+.+|
T Consensus 93 ~~~~~~~~~-~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 93 PQYVDLIPK-AVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred cchhccCch-HHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCC
Confidence 999888874 8888887532 1 1223456789999999987766655 469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEec
Q 005545 257 SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320 (691)
Q Consensus 257 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G 320 (691)
+++++||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|+ |++.+.|
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999888899999999964 5777999999994 6676544
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-35 Score=338.48 Aligned_cols=203 Identities=26% Similarity=0.388 Sum_probs=170.9
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||++.|+. +.+|+|+||+|++||++||+||||||||||||+|+|.+ ++++|+
T Consensus 311 ~~l~~~~l~~~y~~---------------------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~ 368 (638)
T PRK10636 311 PLLKMEKVSAGYGD---------------------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGE 368 (638)
T ss_pred ceEEEEeeEEEeCC---------------------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCe
Confidence 46999999999851 35999999999999999999999999999999999977 577999
Q ss_pred EEECCEeCChhccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 005545 158 ITYNGRQFSSSLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPL 234 (691)
Q Consensus 158 I~~~G~~~~~~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 234 (691)
|.+++. ..+||++|+. .+.+..|+.+++.- .. .....++++++++.+++.. ..++.++
T Consensus 369 i~~~~~-------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~--- 429 (638)
T PRK10636 369 IGLAKG-------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETR--- 429 (638)
T ss_pred EEECCC-------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchh---
Confidence 999741 2599999974 35566788877531 11 1122356788999999963 5666664
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+ ..+.++||++++|++|
T Consensus 430 --~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G 503 (638)
T PRK10636 430 --RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDG 503 (638)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999998 34 999999996 4688899999999999
Q ss_pred eEE-EecCHhHHHH
Q 005545 315 SPI-YSGRAAQVMD 327 (691)
Q Consensus 315 ~iv-~~G~~~~~~~ 327 (691)
+++ +.|+.++..+
T Consensus 504 ~i~~~~g~~~~~~~ 517 (638)
T PRK10636 504 KVEPFDGDLEDYQQ 517 (638)
T ss_pred EEEEcCCCHHHHHH
Confidence 997 8899887644
No 343
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-35 Score=286.90 Aligned_cols=202 Identities=28% Similarity=0.389 Sum_probs=168.9
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChh--c--cccEEEEccCCC--CCCC
Q 005545 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS--L--KRKTGFVTQDDV--LYPH 185 (691)
Q Consensus 112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~--~--~~~igyv~Q~~~--l~~~ 185 (691)
++++|+++|++|.+|+++-|+|.||||||||+|+|+|.+ .+++|+|.++|.++++. . ...++-|+|||. ..+.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l-~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc-ccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 578999999999999999999999999999999999977 57899999999999752 2 236788999985 7999
Q ss_pred CCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEE
Q 005545 186 LTVLETLSYAALLRLPKKLTR---EEKIEQAEMVIMEL--GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLL 260 (691)
Q Consensus 186 lTV~E~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLl 260 (691)
||+.||+..+..-.-.+.... ..+++...+-++.+ ||++..++++| -|||||||-+++++|-++.|+||+
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pkiLL 171 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKILL 171 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcEEE
Confidence 999999988753211112222 23333445555655 56788888887 499999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEec
Q 005545 261 LDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320 (691)
Q Consensus 261 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G 320 (691)
|||-|++|||.++..+++.-.++.+ .+.|.+++||.+. ++.++.+|+++|++|+||.+-
T Consensus 172 LDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 172 LDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred ecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999876 4789999999965 577999999999999999753
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.6e-34 Score=336.48 Aligned_cols=206 Identities=26% Similarity=0.404 Sum_probs=171.2
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
...|+++||+++|.. +.+|+|+||+|++||+++|+||||||||||||+|+|.+ +|++|
T Consensus 317 ~~~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G 374 (635)
T PRK11147 317 KIVFEMENVNYQIDG---------------------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSG 374 (635)
T ss_pred CceEEEeeeEEEECC---------------------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCc
Confidence 357999999999851 35999999999999999999999999999999999977 57799
Q ss_pred EEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 005545 157 KITYNGRQFSSSLKRKTGFVTQDD-VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVGGPL 234 (691)
Q Consensus 157 ~I~~~G~~~~~~~~~~igyv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 234 (691)
+|.+ |.++ .+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.++
T Consensus 375 ~i~~-~~~~------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~--- 439 (635)
T PRK11147 375 RIHC-GTKL------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK--- 439 (635)
T ss_pred EEEE-CCCc------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh---
Confidence 9998 4322 599999985 5889999999998753210 111 1134577889999985 45666664
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec-C
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS-E 313 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~-~ 313 (691)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||. ..+..+||++++|+ +
T Consensus 440 --~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~ 513 (635)
T PRK11147 440 --ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGN 513 (635)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCC
Confidence 69999999999999999999999999999999999999999999887 35999999995 46788999999998 7
Q ss_pred CeEE-EecCHhHH
Q 005545 314 GSPI-YSGRAAQV 325 (691)
Q Consensus 314 G~iv-~~G~~~~~ 325 (691)
|++. |.|+.++.
T Consensus 514 g~i~~~~g~y~~y 526 (635)
T PRK11147 514 GKIGRYVGGYHDA 526 (635)
T ss_pred CeEEEccCCHHHH
Confidence 9986 46776654
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.4e-34 Score=273.79 Aligned_cols=144 Identities=32% Similarity=0.548 Sum_probs=131.0
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT 159 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~ 159 (691)
|+++|+++.|.. ..+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus 1 l~~~~l~~~~~~---------------------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~ 58 (144)
T cd03221 1 IELENLSKTYGG---------------------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVT 58 (144)
T ss_pred CEEEEEEEEECC---------------------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEE
Confidence 468899988852 24899999999999999999999999999999999976 57799999
Q ss_pred ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545 160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS 239 (691)
Q Consensus 160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 239 (691)
++|+ +.++|++| ||
T Consensus 59 ~~~~-------~~i~~~~~-----------------------------------------------------------lS 72 (144)
T cd03221 59 WGST-------VKIGYFEQ-----------------------------------------------------------LS 72 (144)
T ss_pred ECCe-------EEEEEEcc-----------------------------------------------------------CC
Confidence 9984 46999998 79
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
+||+||++|||+|+.+|+++++||||+|||+.++..+.+.|+++ ++|+|+++|++. ++.+++|++++|++|+
T Consensus 73 ~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999987 479999999964 5778999999999985
No 346
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-34 Score=361.14 Aligned_cols=207 Identities=23% Similarity=0.379 Sum_probs=170.6
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++|++|+|+... ++.+|+|+|++|++||.++|+||||||||||+++|.|.++ +.+|.+
T Consensus 614 ~I~~~~vsF~y~~~~------------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~G~i 674 (1495)
T PLN03232 614 AISIKNGYFSWDSKT------------------SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-HAETSS 674 (1495)
T ss_pred cEEEEeeEEEcCCCC------------------CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc-ccCCCE
Confidence 599999999997311 2358999999999999999999999999999999999774 667766
Q ss_pred EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccc
Q 005545 159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRNSVVG 231 (691)
Q Consensus 159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg 231 (691)
. ..++.++||+|++.++. -||+|||.|+.. .+++ +.+++++..+ |++..+|.+|
T Consensus 675 ~--------~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~~------~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IG 735 (1495)
T PLN03232 675 V--------VIRGSVAYVPQVSWIFN-ATVRENILFGSD------FESE----RYWRAIDVTALQHDLDLLPGRDLTEIG 735 (1495)
T ss_pred E--------EecCcEEEEcCcccccc-ccHHHHhhcCCc------cCHH----HHHHHHHHhCCHHHHHhCCCCCCceec
Confidence 3 25678999999999996 599999998631 2232 2333444333 4566789998
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT-LRGLARGGRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
+. ...||||||||++||||+.++|+|++||||||+||+.++.++++. ++.+ .+|+|+|++||+++ ..+.+|+|++
T Consensus 736 e~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~ 811 (1495)
T PLN03232 736 ER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIIL 811 (1495)
T ss_pred CC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEE
Confidence 64 456999999999999999999999999999999999999999765 5544 35899999999975 3578999999
Q ss_pred ecCCeEEEecCHhHHHH
Q 005545 311 LSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 311 L~~G~iv~~G~~~~~~~ 327 (691)
|++|++++.|+.+++.+
T Consensus 812 L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 812 VSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EeCCEEEEecCHHHHHh
Confidence 99999999999999864
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-34 Score=332.62 Aligned_cols=209 Identities=23% Similarity=0.355 Sum_probs=164.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+++|. .+.+|+|+||+|++||++||+||||||||||||+|+|.+ .+++|+|
T Consensus 1 ~i~i~nls~~~g---------------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-~pd~G~I 58 (638)
T PRK10636 1 MIVFSSLQIRRG---------------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-SADGGSY 58 (638)
T ss_pred CEEEEEEEEEeC---------------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceE
Confidence 378999999986 245999999999999999999999999999999999976 4789999
Q ss_pred EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH--------h---------------hcC-CCCCCHHHHHHHHH
Q 005545 159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAA--------L---------------LRL-PKKLTREEKIEQAE 214 (691)
Q Consensus 159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~--------~---------------~~~-~~~~~~~~~~~~v~ 214 (691)
.++|.. .++|++|+...+ ..|+.+.+.-.. . +.. .......+..++++
T Consensus 59 ~~~~~~-------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (638)
T PRK10636 59 TFPGNW-------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAA 130 (638)
T ss_pred EecCCC-------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 998742 388999865433 246655432110 0 000 00000112345788
Q ss_pred HHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 005545 215 MVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT 293 (691)
Q Consensus 215 ~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~ 293 (691)
++++.+|+. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++
T Consensus 131 ~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviiv 202 (638)
T PRK10636 131 SLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILI 202 (638)
T ss_pred HHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEE
Confidence 899999996 46676664 69999999999999999999999999999999999999999999876 4699999
Q ss_pred eCCCchHHHhcCCEEEEecCCeEE-EecCHhHHH
Q 005545 294 IHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVM 326 (691)
Q Consensus 294 ~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 326 (691)
|||. ..+.++||++++|++|+++ |.|+.+...
T Consensus 203 sHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 203 SHDR-DFLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred eCCH-HHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 9996 4678899999999999986 677766543
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=8.6e-34 Score=331.96 Aligned_cols=207 Identities=22% Similarity=0.333 Sum_probs=167.5
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
..|+++||++.|+. .+.+|+|+||+|++||+++|+||||||||||||+|+|++ +|.+|+
T Consensus 507 ~~L~~~~ls~~y~~--------------------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll-~p~~G~ 565 (718)
T PLN03073 507 PIISFSDASFGYPG--------------------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL-QPSSGT 565 (718)
T ss_pred ceEEEEeeEEEeCC--------------------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCce
Confidence 57999999999851 134899999999999999999999999999999999977 477999
Q ss_pred EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCc
Q 005545 158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFR 236 (691)
Q Consensus 158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 236 (691)
|.+++ +..+||++|+. .+.+++.++.........+ ... .++++++++.+|+.+ ..++.+ +
T Consensus 566 I~~~~-------~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~ 626 (718)
T PLN03073 566 VFRSA-------KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----Y 626 (718)
T ss_pred EEECC-------ceeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----c
Confidence 99875 24699999985 3455666664332111111 111 245778999999974 455554 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++. +| |||++|||+ ..+..+||++++|++|++
T Consensus 627 ~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i 702 (718)
T PLN03073 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKV 702 (718)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 69999999999999999999999999999999999999998888765 34 999999996 457889999999999999
Q ss_pred E-EecCHhHHHHH
Q 005545 317 I-YSGRAAQVMDY 328 (691)
Q Consensus 317 v-~~G~~~~~~~~ 328 (691)
+ +.|+.++..++
T Consensus 703 ~~~~g~~~~~~~~ 715 (718)
T PLN03073 703 TPFHGTFHDYKKT 715 (718)
T ss_pred EEeCCCHHHHHHH
Confidence 8 78887765544
No 349
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.6e-34 Score=335.59 Aligned_cols=199 Identities=22% Similarity=0.320 Sum_probs=161.2
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++||++.++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++.+|+|
T Consensus 451 ~i~~~nv~~~~~~--------------------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~~~~G~i 509 (659)
T TIGR00954 451 GIKFENIPLVTPN--------------------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRL 509 (659)
T ss_pred eEEEEeeEEECCC--------------------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeE
Confidence 5999999998852 135899999999999999999999999999999999976 5678999
Q ss_pred EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CCC
Q 005545 159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG----GPL 234 (691)
Q Consensus 159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~ 234 (691)
.+++ ++.++||+|++.+++. |++||+.++....... ......++++++++.++|.+..++..| ...
T Consensus 510 ~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~ 579 (659)
T TIGR00954 510 TKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDW 579 (659)
T ss_pred eecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCccccccc
Confidence 8864 5679999999998876 9999998753211000 000112456788999999765544221 012
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
...||||||||++|||+|+++|++++|||||+|||+.++..+.+.+++. |+|+|+++|+++. .+.+|++++|+.
T Consensus 580 ~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~--~~~~d~il~l~~ 653 (659)
T TIGR00954 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSL--WKYHEYLLYMDG 653 (659)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHH--HHhCCEEEEEeC
Confidence 3579999999999999999999999999999999999999999988763 8999999999753 588999999963
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.1e-34 Score=280.05 Aligned_cols=156 Identities=28% Similarity=0.376 Sum_probs=131.7
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l 192 (691)
+.+|+|+||++++||+++|+||||||||||||+|.+ .+|+|.++|... ...++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~-~~~~~~~~~~~q-------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLP-KFSRNKLIFIDQ-------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccc-ccccccEEEEhH--------------
Confidence 568999999999999999999999999999999853 389999988632 222345788877
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCcccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCC
Q 005545 193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFRGISGGERKRVSIGQEMLVN--PSCLLLDEPTSGLD 269 (691)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~--P~iLlLDEPtsgLD 269 (691)
.++++.++|.. ..+.++ +.||||||||++||++|+.+ |++++|||||+|||
T Consensus 68 ---------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 ---------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred ---------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 23567778864 345444 57999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545 270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP 316 (691)
Q Consensus 270 ~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i 316 (691)
+.++..+.+.|++++++|+|||++||++. .+ +.+|++++|.+|+.
T Consensus 122 ~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 122 QQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCC
Confidence 99999999999999878999999999975 44 68999999966544
No 351
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=347.09 Aligned_cols=207 Identities=29% Similarity=0.483 Sum_probs=192.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHH
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVL 189 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~ 189 (691)
+++++|+.|++||+.+++|+|||||||++|+|+|.. .+++|+++++|.++.. ..++.+||+||+|.+++.+|.+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-cCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHH
Confidence 899999999999999999999999999999999966 5789999999998853 2678899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545 190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269 (691)
Q Consensus 190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD 269 (691)
|+|.+.+++| +.++.+.++.++.+++.+||.+.+++.++ .+|||+|||+++|.||+.+|++++|||||+|+|
T Consensus 659 EhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGmD 730 (885)
T KOG0059|consen 659 EHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLD 730 (885)
T ss_pred HHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCC
Confidence 9999998876 56677777889999999999999999875 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhh
Q 005545 270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGS 331 (691)
Q Consensus 270 ~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 331 (691)
|.+++.+++++++++++|+.||+|||.+ ++...+|||+.+|.+|++...|+++++...|++
T Consensus 731 P~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 731 PKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence 9999999999999999888999999995 578999999999999999999999999988875
No 352
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.5e-34 Score=357.67 Aligned_cols=206 Identities=22% Similarity=0.380 Sum_probs=171.4
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc-eE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS-GK 157 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~-G~ 157 (691)
.|+++|++|+|+... ++.+|+|+|++|++||.++|+||||||||||+++|.|.+ ++.+ |+
T Consensus 614 ~I~~~nvsf~y~~~~------------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~GG~ 674 (1622)
T PLN03130 614 AISIKNGYFSWDSKA------------------ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDAS 674 (1622)
T ss_pred ceEEEeeEEEccCCC------------------CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-ccCCCce
Confidence 599999999997321 235899999999999999999999999999999999977 4678 89
Q ss_pred EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Cccccccc
Q 005545 158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRNSVV 230 (691)
Q Consensus 158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v 230 (691)
|.+ ++.++||+|++.++. .||+|||.|+.. .++ ++.+++++..+| ++..+|.+
T Consensus 675 I~l---------~~~Iayv~Q~p~Lfn-gTIreNI~fg~~------~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~I 734 (1622)
T PLN03130 675 VVI---------RGTVAYVPQVSWIFN-ATVRDNILFGSP------FDP----ERYERAIDVTALQHDLDLLPGGDLTEI 734 (1622)
T ss_pred EEE---------cCeEEEEcCccccCC-CCHHHHHhCCCc------ccH----HHHHHHHHHhCcHHHHHhCCCcccccc
Confidence 975 457999999999996 599999998632 122 234444444443 55678899
Q ss_pred cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA-TLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
|+. ...||||||||++||||+..+|+|++||||||+||+.++.++++ .++.+. +|+|+|++||++. ..+.+|+|+
T Consensus 735 Ge~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii 810 (1622)
T PLN03130 735 GER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRII 810 (1622)
T ss_pred cCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEE
Confidence 863 45699999999999999999999999999999999999998874 566554 5799999999974 467899999
Q ss_pred EecCCeEEEecCHhHHHH
Q 005545 310 VLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~~~~ 327 (691)
+|++|++++.|+.+++.+
T Consensus 811 ~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 811 LVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999999864
No 353
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7.3e-34 Score=279.20 Aligned_cols=145 Identities=30% Similarity=0.472 Sum_probs=127.6
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 005545 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLET 191 (691)
Q Consensus 112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~ 191 (691)
++.+++|+ +++++||+++|+||||||||||+|+|+|++ .+++|+|.++|++ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~--------i~~~~q~~~---------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDGIT--------PVYKPQYID---------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECCEE--------EEEEcccCC----------
Confidence 35688885 899999999999999999999999999977 4779999999853 788888532
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005545 192 LSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDST 271 (691)
Q Consensus 192 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~ 271 (691)
||||||||++|||+|+.+|++++|||||+|||+.
T Consensus 72 ----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~ 105 (177)
T cd03222 72 ----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105 (177)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC-cEEEEEeCCCchHHHhcCCEEEEecCCeEEEe--cCHh
Q 005545 272 TAQRIVATLRGLARGG-RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS--GRAA 323 (691)
Q Consensus 272 ~~~~i~~~L~~l~~~g-~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~--G~~~ 323 (691)
++..+.+.|+++++++ .|||++||++ ..+.++||++++|+++-.++. |++.
T Consensus 106 ~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 106 QRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999998764 9999999996 457779999999998766544 5443
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.7e-33 Score=326.25 Aligned_cols=207 Identities=25% Similarity=0.375 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
+|+++||+++|.. +.+|+|+||+|++||++||+||||||||||||+|+|.. .+++|+|
T Consensus 3 ~l~i~~ls~~~~~---------------------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-~p~~G~I 60 (635)
T PRK11147 3 LISIHGAWLSFSD---------------------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-LLDDGRI 60 (635)
T ss_pred EEEEeeEEEEeCC---------------------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEE
Confidence 5899999999962 35999999999999999999999999999999999976 5779999
Q ss_pred EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHH------------------------------Hhhc--CCCCCCH
Q 005545 159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYA------------------------------ALLR--LPKKLTR 206 (691)
Q Consensus 159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~------------------------------~~~~--~~~~~~~ 206 (691)
.++|.. .++|++|++......+|.+++..+ ..+. +. ....
T Consensus 61 ~~~~~~-------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 132 (635)
T PRK11147 61 IYEQDL-------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNL 132 (635)
T ss_pred EeCCCC-------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCc
Confidence 998731 267777765433334566543211 0000 00 0000
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005545 207 EEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286 (691)
Q Consensus 207 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~ 286 (691)
.+...+++++++.+|+.. ++.+ ..|||||||||+||++|+.+|+||||||||++||+.++..+.+.|+++.
T Consensus 133 ~~~~~~~~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-- 203 (635)
T PRK11147 133 WQLENRINEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-- 203 (635)
T ss_pred ccHHHHHHHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--
Confidence 123456888999999963 4444 4699999999999999999999999999999999999999999999883
Q ss_pred CcEEEEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHH
Q 005545 287 GRTVITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVM 326 (691)
Q Consensus 287 g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 326 (691)
.|||++|||+ ..+.++||++++|++|+++ +.|+.++..
T Consensus 204 -~tvlivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 204 -GSIIFISHDR-SFIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred -CEEEEEeCCH-HHHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 5999999996 4578899999999999997 568776554
No 355
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.1e-34 Score=263.45 Aligned_cols=177 Identities=30% Similarity=0.504 Sum_probs=156.4
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEEECCEeCCh--hccccEEEEccCCCCCCCCCH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--KFSGKITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTV 188 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~~~G~I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV 188 (691)
..+|-++|++|.+||++-|||||||||||||.-+.|.+.+ ..+|++++|+++++. ..+|++|+.+||+.+||+++|
T Consensus 15 ~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsV 94 (213)
T COG4136 15 SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSV 94 (213)
T ss_pred ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccccc
Confidence 4589999999999999999999999999999999997754 469999999999864 568899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005545 189 LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGL 268 (691)
Q Consensus 189 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgL 268 (691)
.+||.|+. |..+.-+.+++.+...+++.||....++.. ..||||||-||++-|+|+..|+.++||||+|.|
T Consensus 95 g~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~L 165 (213)
T COG4136 95 GQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDP-----ATLSGGQRARVALLRALLAQPKALLLDEPFSRL 165 (213)
T ss_pred ccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcCh-----hhcCcchHHHHHHHHHHHhCcceeeeCCchhHH
Confidence 99998864 455555677778899999999998777644 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-hCCcEEEEEeCCCc
Q 005545 269 DSTTAQRIVATLRGLA-RGGRTVITTIHQPS 298 (691)
Q Consensus 269 D~~~~~~i~~~L~~l~-~~g~tii~~~H~p~ 298 (691)
|..-+.++.+..-.-. ..|..+|.+|||..
T Consensus 166 D~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 166 DVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999999998877655 46999999999954
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-33 Score=267.01 Aligned_cols=141 Identities=47% Similarity=0.800 Sum_probs=129.1
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHH
Q 005545 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVL 189 (691)
Q Consensus 114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~ 189 (691)
.+|+++|+++++||+++|+|+||||||||+++|+|.+ ++.+|+|+++|.++.. ..++.++|++|
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~-~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q----------- 80 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL-KPTSGEILIDGKDIAKLPLEELRRRIGYVPQ----------- 80 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccCCHHHHHhceEEEee-----------
Confidence 5899999999999999999999999999999999987 4679999999987743 34567999998
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545 190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269 (691)
Q Consensus 190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD 269 (691)
|||||+||++||++++.+|++++|||||+|||
T Consensus 81 ------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD 112 (157)
T cd00267 81 ------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLD 112 (157)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 270 ~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
..++..+.+.|+++.+.++|+|++||++. .+...||+++++++|+
T Consensus 113 ~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 113 PASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 99999999999999877899999999964 5777899999999875
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.7e-33 Score=348.52 Aligned_cols=210 Identities=23% Similarity=0.396 Sum_probs=170.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|+++|++|+|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|
T Consensus 636 ~i~~~~~~~~~~~~-------------------~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~-~~~~G~i 695 (1522)
T TIGR00957 636 SITVHNATFTWARD-------------------LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHV 695 (1522)
T ss_pred cEEEEEeEEEcCCC-------------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-ccCCcEE
Confidence 69999999999621 135899999999999999999999999999999999977 4679999
Q ss_pred EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCCCC
Q 005545 159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAE--MVIMELGL-TRCRNSVVGGPLF 235 (691)
Q Consensus 159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~ 235 (691)
.++| .++||+|++.++ +.||+||+.|+.. ..+++.++.++ .+.+.+++ ++..+|.+|+ ..
T Consensus 696 ~~~g---------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g 758 (1522)
T TIGR00957 696 HMKG---------SVAYVPQQAWIQ-NDSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGE-KG 758 (1522)
T ss_pred EECC---------EEEEEcCCcccc-CCcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CC
Confidence 9987 499999999887 4799999988632 12222221111 12233332 3445677775 35
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA--RGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~--~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
..||||||||++||||+..+|++++||||||+||+.++..+.+.+.+.. .+|+|+|++||++.. + ..+|+|++|++
T Consensus 759 ~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-l-~~~D~ii~l~~ 836 (1522)
T TIGR00957 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-L-PQVDVIIVMSG 836 (1522)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-h-hhCCEEEEecC
Confidence 6799999999999999999999999999999999999999999997642 357999999999753 4 56999999999
Q ss_pred CeEEEecCHhHHHH
Q 005545 314 GSPIYSGRAAQVMD 327 (691)
Q Consensus 314 G~iv~~G~~~~~~~ 327 (691)
|++++.|+.+++.+
T Consensus 837 G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 837 GKISEMGSYQELLQ 850 (1522)
T ss_pred CeEEeeCCHHHHHh
Confidence 99999999998864
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7e-33 Score=318.75 Aligned_cols=186 Identities=28% Similarity=0.367 Sum_probs=154.7
Q ss_pred ccccc-cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE-----------ECCEeCChh------c
Q 005545 108 KQTRT-VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT-----------YNGRQFSSS------L 169 (691)
Q Consensus 108 ~~~~~-~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~-----------~~G~~~~~~------~ 169 (691)
++|+. ..+|++++ .+++||++||+||||||||||||+|+|.+ .|++|+|. ++|+++... .
T Consensus 81 ~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l-~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~ 158 (590)
T PRK13409 81 HRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL-IPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNG 158 (590)
T ss_pred EEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCccccCCCcHHHHHHHhCChHHHHHHHHHhcc
Confidence 34443 35899999 99999999999999999999999999977 46799998 999887431 1
Q ss_pred cccEEEEccCCCCCCC---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHH
Q 005545 170 KRKTGFVTQDDVLYPH---LTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRV 246 (691)
Q Consensus 170 ~~~igyv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 246 (691)
+..+++.+|.....|. .||+|++... +..++++++++.+||.+..++.++ .|||||||||
T Consensus 159 ~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv 221 (590)
T PRK13409 159 EIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRV 221 (590)
T ss_pred CcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHH
Confidence 2345666665433332 3999988531 123468899999999888887774 6999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 247 SIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 247 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
+||++|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|++++|+++
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999988 999999999964 678999999999763
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.8e-32 Score=343.72 Aligned_cols=192 Identities=28% Similarity=0.417 Sum_probs=157.8
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l 192 (691)
+.+|+|+|++|++||+++|+|||||||||||++|+|.+ ++.+|+|.++| .++||+|++.+++. ||+||+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~-~~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eNI 507 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPSEGKIKHSG---------RISFSPQTSWIMPG-TIKDNI 507 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECC---------EEEEEeCCCccCCc-cHHHHH
Confidence 56999999999999999999999999999999999987 47799999998 39999999999874 999999
Q ss_pred HHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545 193 SYAALLRLPKKLTREEKIEQ-----AEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG 267 (691)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg 267 (691)
.|+... ..+...+. .++.++.+ .+..+|.+|+. ...|||||||||+||||++.+|+++||||||||
T Consensus 508 ~~g~~~------~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 508 IFGLSY------DEYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred Hhcccc------chHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 986421 11111111 12223322 33345677753 567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 268 LDSTTAQRIVAT-LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 268 LD~~~~~~i~~~-L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
||+.++..+.+. ++++. +|+|+|++||++.. + ..||++++|++|++++.|+.+++..
T Consensus 579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999974 67765 48999999999753 4 5699999999999999999988863
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-32 Score=260.45 Aligned_cols=215 Identities=31% Similarity=0.446 Sum_probs=169.8
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.+++++||..|.. ..-.+||||++.|||+++|+|+|||||||||++|++++ .|++|+|
T Consensus 6 LL~V~~lsk~Yg~---------------------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl-~p~~G~v 63 (258)
T COG4107 6 LLSVSGLSKLYGP---------------------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL-TPDAGTV 63 (258)
T ss_pred ceeehhhhhhhCC---------------------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc-CCCCCeE
Confidence 6788888887763 23578999999999999999999999999999999998 4779999
Q ss_pred EECC---EeCC-----hh-----ccccEEEEccCCC--CC----CCCCHHHHHHH-HHhhcCCCCCCHHHHHHHHHHHHH
Q 005545 159 TYNG---RQFS-----SS-----LKRKTGFVTQDDV--LY----PHLTVLETLSY-AALLRLPKKLTREEKIEQAEMVIM 218 (691)
Q Consensus 159 ~~~G---~~~~-----~~-----~~~~igyv~Q~~~--l~----~~lTV~E~l~~-~~~~~~~~~~~~~~~~~~v~~~l~ 218 (691)
.|.- ++.. +. +|-.-|+|.|+|. +- ..-.|.|-+.- +++ . --..++.+.++++
T Consensus 64 ~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-----H--YG~iR~~a~~WL~ 136 (258)
T COG4107 64 TYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-----H--YGNIRAEAQDWLE 136 (258)
T ss_pred EEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-----h--hhhHHHHHHHHHH
Confidence 9864 2221 11 2335799999875 22 22234444321 111 1 1234456778999
Q ss_pred HcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCC
Q 005545 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQP 297 (691)
Q Consensus 219 ~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p 297 (691)
++.++..+ + +..++..|||++||+.|||-|++.|++.|+||||-|||.+.+..++++++.|..+ |.+++++|||.
T Consensus 137 ~VEI~~~R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl 212 (258)
T COG4107 137 EVEIDLDR---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred hcccCccc---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh
Confidence 99886432 2 2356889999999999999999999999999999999999999999999999875 99999999995
Q ss_pred chHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 298 SSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 298 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
..+.-++||.++|++|++++.|-.+++++
T Consensus 213 -~VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 213 -AVARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred -HHHHHhhhcceeecCCCEecccccccccc
Confidence 45677999999999999999999988854
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.3e-32 Score=261.53 Aligned_cols=176 Identities=27% Similarity=0.420 Sum_probs=155.5
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChh---ccccEEEEccCCCCCCCCCH
Q 005545 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS---LKRKTGFVTQDDVLYPHLTV 188 (691)
Q Consensus 112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~---~~~~igyv~Q~~~l~~~lTV 188 (691)
++.++.++||++.+||.+-|.||||||||||||+|+|++. |.+|+|.++|.++... .++.+-|+-.++.+=+.+||
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-CCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 4579999999999999999999999999999999999885 6799999999988642 44667788888888889999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005545 189 LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGL 268 (691)
Q Consensus 189 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgL 268 (691)
.|||.|.....-. .....+.+.++.+||....|.+++ .||-||||||+|||-+++.+++.|||||+++|
T Consensus 93 ~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~taL 161 (209)
T COG4133 93 LENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161 (209)
T ss_pred HHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCccccc
Confidence 9999997654311 112467789999999999998886 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545 269 DSTTAQRIVATLRGLARGGRTVITTIHQPSS 299 (691)
Q Consensus 269 D~~~~~~i~~~L~~l~~~g~tii~~~H~p~~ 299 (691)
|......+-.++..-+++|-.||.+||||..
T Consensus 162 Dk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 162 DKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999889999999999865
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=1.2e-31 Score=301.92 Aligned_cols=210 Identities=30% Similarity=0.449 Sum_probs=171.4
Q ss_pred eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~ 157 (691)
.+|+++||+++|. .+.+|+|+|+++.+|+.+||||+||||||||||+|+|.. .+++|+
T Consensus 2 ~~i~~~~ls~~~g---------------------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~-~~~~G~ 59 (530)
T COG0488 2 SMITLENLSLAYG---------------------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPDSGE 59 (530)
T ss_pred ceEEEeeeEEeeC---------------------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC-cCCCCe
Confidence 3688999999985 256999999999999999999999999999999999977 477999
Q ss_pred EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh--c-----------CCCC--------------CCHHHHH
Q 005545 158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL--R-----------LPKK--------------LTREEKI 210 (691)
Q Consensus 158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~--~-----------~~~~--------------~~~~~~~ 210 (691)
|...+ -.+++|++|++...+..||.|.+.-+..- . ++.. ....+.+
T Consensus 60 i~~~~-------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e 132 (530)
T COG0488 60 VTRPK-------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLE 132 (530)
T ss_pred EeecC-------CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchH
Confidence 98753 13599999999999999999987654310 0 0000 0001123
Q ss_pred HHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE
Q 005545 211 EQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290 (691)
Q Consensus 211 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~ti 290 (691)
.+++.++..+|+.+. ++.++ .||||||.||+||++|+.+|++|||||||+.||..+...+-+.|++. .| |+
T Consensus 133 ~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tv 203 (530)
T COG0488 133 ARAEEALLGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TV 203 (530)
T ss_pred HHHHHHHhcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cE
Confidence 567788888888876 66665 69999999999999999999999999999999999999999999865 46 99
Q ss_pred EEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHH
Q 005545 291 ITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVM 326 (691)
Q Consensus 291 i~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 326 (691)
|++||| ...+-++|++|+-++.|++. |.|..+...
T Consensus 204 iiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 204 IVVSHD-RYFLDNVATHILELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred EEEeCC-HHHHHHHhhheEEecCCceeEecCCHHHHH
Confidence 999999 67899999999999999865 666655443
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=7.3e-32 Score=315.77 Aligned_cols=220 Identities=21% Similarity=0.240 Sum_probs=158.9
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CC
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--GK 153 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~~ 153 (691)
+.-.|+++|++++|.. +.+|+|+||+|.+||.+||+||||||||||||+|+|+.. .|
T Consensus 174 ~~~~I~i~nls~~y~~---------------------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p 232 (718)
T PLN03073 174 AIKDIHMENFSISVGG---------------------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIP 232 (718)
T ss_pred CceeEEEceEEEEeCC---------------------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 4567999999999951 359999999999999999999999999999999999631 24
Q ss_pred CceEEEECCEeC-----Ch-------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-------------
Q 005545 154 FSGKITYNGRQF-----SS-------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK------------- 202 (691)
Q Consensus 154 ~~G~I~~~G~~~-----~~-------------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~------------- 202 (691)
.+|+|.+.++.. +. ..++.++|++|++.+... ++.++.........+.
T Consensus 233 ~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 311 (718)
T PLN03073 233 KNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKR 311 (718)
T ss_pred CCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHH
Confidence 578887655432 10 012235666665432211 1111110000000000
Q ss_pred --CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005545 203 --KLTREEKIEQAEMVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279 (691)
Q Consensus 203 --~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~ 279 (691)
........+++.++++.+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.
T Consensus 312 ~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 386 (718)
T PLN03073 312 LELIDAYTAEARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETY 386 (718)
T ss_pred HHhcCcchHHHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 000112334667788888885 3445555 46999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHH
Q 005545 280 LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVM 326 (691)
Q Consensus 280 L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 326 (691)
|+++ +.|||++|||. ..+..+||++++|++|+++ |.|+.++..
T Consensus 387 L~~~---~~tviivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 387 LLKW---PKTFIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred HHHc---CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 9887 67999999995 5678899999999999996 678766543
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=2.5e-31 Score=333.87 Aligned_cols=195 Identities=29% Similarity=0.375 Sum_probs=154.3
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 005545 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLE 190 (691)
Q Consensus 111 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E 190 (691)
+.+.+|+|+|++|++||+++|+|||||||||||++|+|.+ .+.+|+|.++ +.++||+|++.++ +.||+|
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~-~~~~G~i~~~---------~~i~yv~Q~~~l~-~~Tv~e 739 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAE---------RSIAYVPQQAWIM-NATVRG 739 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEEC---------CeEEEEeCCCccC-CCcHHH
Confidence 3457999999999999999999999999999999999987 4679999863 4699999999887 479999
Q ss_pred HHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005545 191 TLSYAALLRLPKKLTREEKI-----EQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPT 265 (691)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt 265 (691)
|+.|+.. ...+... ..+++.++.+ .+..++.+|. ....|||||||||+|||||+.+|++++|||||
T Consensus 740 nI~~~~~------~~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 740 NILFFDE------EDAARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred HHHcCCh------hhHHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 9987521 1111111 1223344444 1223444543 34679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 266 sgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
++||+.++..+++.+.....+|+|+|++||++.. .+.+|+|++|++|++++.|+.+++.+
T Consensus 811 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 811 SALDAHVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999987543222358999999999743 46899999999999999999988753
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.4e-30 Score=266.19 Aligned_cols=189 Identities=25% Similarity=0.377 Sum_probs=135.2
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHH-HHHHcCCCCCCceEEEEC-----------C-EeCCh--hcc-ccEEEE
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLL-TALAGRLRGKFSGKITYN-----------G-RQFSS--SLK-RKTGFV 176 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL-~~L~G~~~~~~~G~I~~~-----------G-~~~~~--~~~-~~igyv 176 (691)
..+|+|+||++++||+++|+|+||||||||+ ..+.. +|++.+. | ....+ ..+ ...++.
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH------HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 4689999999999999999999999999996 44431 2222110 0 00000 111 234444
Q ss_pred ccCCC--CCCCCCHHH---HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCcccCHHHHHHHHHHH
Q 005545 177 TQDDV--LYPHLTVLE---TLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFRGISGGERKRVSIGQ 250 (691)
Q Consensus 177 ~Q~~~--l~~~lTV~E---~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~ 250 (691)
.|++. ..+..+|.. ...+...+. ......++ .+.++.++|.+ ..+..+ ..|||||||||+||+
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHHHH
Confidence 44432 344556543 222211111 11112223 46799999975 355554 579999999999999
Q ss_pred HHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEec
Q 005545 251 EMLVNP--SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSG 320 (691)
Q Consensus 251 aL~~~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G 320 (691)
+|+.+| ++|+|||||+|||+.++..+.+.|++++++|.|||++||++. .+ +.||++++| ++|+++++|
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 999998 599999999999999999999999999888999999999975 44 699999999 999999986
No 366
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.3e-31 Score=249.95 Aligned_cols=214 Identities=29% Similarity=0.423 Sum_probs=175.9
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
+..|..+||++++....+.. -...+|+|+||+++.||++++=||||||||||||+|-|.+ .+++|
T Consensus 2 ~~~l~v~~~~KtFtlH~q~G--------------i~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~~d~G 66 (235)
T COG4778 2 PTPLNVSNVSKTFTLHQQGG--------------VRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-LPDEG 66 (235)
T ss_pred CceeeeecchhheEeeecCC--------------EEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-CCCCc
Confidence 34688899998887654321 1346999999999999999999999999999999999976 57899
Q ss_pred EEEECCEe--CC-----h----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005545 157 KITYNGRQ--FS-----S----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224 (691)
Q Consensus 157 ~I~~~G~~--~~-----~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 224 (691)
+|++.-.. ++ . + .++.+|||.|--...|..+..|-+.-.+.. .+.+.+....++.+++.++++++
T Consensus 67 ~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlpe 143 (235)
T COG4778 67 QILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPE 143 (235)
T ss_pred eEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCH
Confidence 99986432 11 1 2 245799999988888887777766554432 35677888889999999999988
Q ss_pred cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM 304 (691)
Q Consensus 225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~ 304 (691)
....... ...||||+|||.|||.++.+-+||+|||||+.||..+++.++++|++-+.+|..+|=+-|| .+.-...
T Consensus 144 rLW~LaP----aTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~v 218 (235)
T COG4778 144 RLWSLAP----ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAV 218 (235)
T ss_pred HHhcCCC----cccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHH
Confidence 7766543 4689999999999999999999999999999999999999999999988899999999999 4444568
Q ss_pred CCEEEEecC
Q 005545 305 FDKVVVLSE 313 (691)
Q Consensus 305 ~D~v~~L~~ 313 (691)
+||++-+..
T Consensus 219 adR~~~~~~ 227 (235)
T COG4778 219 ADRLLDVSA 227 (235)
T ss_pred hhheeeccc
Confidence 999998864
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.1e-30 Score=314.72 Aligned_cols=219 Identities=27% Similarity=0.379 Sum_probs=182.2
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
..-.|+|+|++.+|.... ..+|+|||++|+|||.+||+|..|||||||+++|-.+. .+.+
T Consensus 1135 ~~G~I~f~~~~~RYrp~l-------------------p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~-e~~~ 1194 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYRPNL-------------------PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV-EPAE 1194 (1381)
T ss_pred CCCeEEEEEeEEEeCCCC-------------------cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-CccC
Confidence 334799999999998432 35999999999999999999999999999999999866 4679
Q ss_pred eEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccc
Q 005545 156 GKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-----AEMVIMELGLTRCR 226 (691)
Q Consensus 156 G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~ 226 (691)
|+|.|||.++.+ ++|++++.+||||.+|.. |||.||.=. ...++++..+. .++.++ .++...
T Consensus 1195 G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf------~e~sD~~IW~ALe~~~Lk~~v~--~~p~~L 1265 (1381)
T KOG0054|consen 1195 GEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF------DEYSDDEIWEALERCQLKDVVS--SLPGGL 1265 (1381)
T ss_pred CeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcc------cccCHHHHHHHHHHhChHHHHh--hCCcCC
Confidence 999999999975 689999999999999975 999998621 12234433322 233333 334456
Q ss_pred cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
|+.+.+ ....+|-||||-+++||||+++.+||+|||.|++.|+.|-..|-++||+-=+ ++|||.+.|+... + --+|
T Consensus 1266 d~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-V-md~D 1341 (1381)
T KOG0054|consen 1266 DSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-V-MDSD 1341 (1381)
T ss_pred CceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-h-hhcC
Confidence 777754 3456999999999999999999999999999999999999999999998544 6999999999875 3 4689
Q ss_pred EEEEecCCeEEEecCHhHHHH
Q 005545 307 KVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 307 ~v~~L~~G~iv~~G~~~~~~~ 327 (691)
||+||++|+++++|+|.++++
T Consensus 1342 rVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1342 RVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred eEEEeeCCeEeecCChHHHHh
Confidence 999999999999999999975
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=6.6e-30 Score=307.85 Aligned_cols=209 Identities=26% Similarity=0.436 Sum_probs=172.9
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
...++++|.+++.+... ....|+|+|++|++|+++||+|+-|||||+||.+|.|.++ ..+|
T Consensus 516 ~~~i~i~~~sfsW~~~~------------------~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~-~~sG 576 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSES------------------PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSG 576 (1381)
T ss_pred CceEEEeeeeEecCCCC------------------CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc-cccc
Confidence 34689999999987421 1237999999999999999999999999999999999884 6799
Q ss_pred EEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccccc
Q 005545 157 KITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRNSV 229 (691)
Q Consensus 157 ~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ 229 (691)
+|.++|. ++||+|++-++. -||+|||.|+..+ .++ +.+++++.-.| +..-.|.
T Consensus 577 ~v~v~gs---------iaYv~Q~pWI~n-gTvreNILFG~~~------d~~----rY~~Vi~aC~L~~Dle~Lp~GD~Te 636 (1381)
T KOG0054|consen 577 SVAVNGS---------VAYVPQQPWIQN-GTVRENILFGSPY------DEE----RYDKVIKACALKKDLEILPFGDLTE 636 (1381)
T ss_pred eEEEcCe---------EEEeccccHhhC-CcHHHhhhcCccc------cHH----HHHHHHHHccCHhHHhhcCCCCcce
Confidence 9999984 999999999884 6999999997532 222 33344444433 4556778
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
+|+ ..-.||||||||+++|||+-++++|++||.|.|++|+++..+|.+..-...-++||+|++|||. +..+.+|.|+
T Consensus 637 IGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Ii 713 (1381)
T KOG0054|consen 637 IGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQII 713 (1381)
T ss_pred ecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEE
Confidence 886 3345999999999999999999999999999999999999999865554444589999999984 3568999999
Q ss_pred EecCCeEEEecCHhHHHH
Q 005545 310 VLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 310 ~L~~G~iv~~G~~~~~~~ 327 (691)
+|++|++.+.|+.+|+.+
T Consensus 714 vl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 714 VLKDGKIVESGTYEELLK 731 (1381)
T ss_pred EecCCeEecccCHHHHHh
Confidence 999999999999999983
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=1.5e-30 Score=244.21 Aligned_cols=133 Identities=47% Similarity=0.752 Sum_probs=119.0
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHH
Q 005545 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLET 191 (691)
Q Consensus 116 L~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~ 191 (691)
|+|+|+++++||+++|+|+||||||||+++|+|.. .+.+|+|.++|+++.. ..++.++|++|++.+++.+||+|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~-~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL-PPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS-HESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999976 4679999999999864 457799999999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545 192 LSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266 (691)
Q Consensus 192 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 266 (691)
...++++++++.+++.+..++.++... ..|||||||||+||+||+.+|++++|||||+
T Consensus 80 ----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 223468889999999888888876533 7899999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.3e-29 Score=261.39 Aligned_cols=193 Identities=23% Similarity=0.357 Sum_probs=152.1
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHH-----cCCC-----C----------CCceEEEECCEeCChhccc--
Q 005545 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALA-----GRLR-----G----------KFSGKITYNGRQFSSSLKR-- 171 (691)
Q Consensus 114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~-----G~~~-----~----------~~~G~I~~~G~~~~~~~~~-- 171 (691)
.-|+|||..|+.|++++|.|+||||||||++.+. ..+. + ..+--|.++..++....|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998552 1110 0 1122477777776421111
Q ss_pred ----------------------------cEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005545 172 ----------------------------KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223 (691)
Q Consensus 172 ----------------------------~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 223 (691)
.+.|..++...+..+||.|++.|...+. ..+++.++++.+||.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCc
Confidence 2445555655667899999998875431 124567799999998
Q ss_pred c-cccccccCCCCcccCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545 224 R-CRNSVVGGPLFRGISGGERKRVSIGQEMLVN---PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS 299 (691)
Q Consensus 224 ~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~ 299 (691)
+ ..+..+ +.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++.
T Consensus 160 ~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~- 233 (261)
T cd03271 160 YIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD- 233 (261)
T ss_pred hhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-
Confidence 6 355544 57999999999999999996 7999999999999999999999999999988999999999974
Q ss_pred HHHhcCCEEEEe------cCCeEEEecCH
Q 005545 300 RLYRMFDKVVVL------SEGSPIYSGRA 322 (691)
Q Consensus 300 ~i~~~~D~v~~L------~~G~iv~~G~~ 322 (691)
.+ +.+|+++.| ++|++++.|++
T Consensus 234 ~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 34 679999999 89999999864
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.5e-28 Score=271.07 Aligned_cols=200 Identities=27% Similarity=0.448 Sum_probs=171.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHL 186 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~l 186 (691)
.++|+||++++||+++|-|-=|||+|-|+++|.|.. +..+|+|.+||+++.. ..+..++||+.|. .++..+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~-~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR-PASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC-cCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 478999999999999999999999999999999954 5679999999998742 4667999999874 488999
Q ss_pred CHHHHHHHHHhhcCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005545 187 TVLETLSYAALLRLP-K-KLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDE 263 (691)
Q Consensus 187 TV~E~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDE 263 (691)
+|.||+.++...+.. . -.++....+.+++..+.+++.- ..+..+ ..||||.+|||.|||.|..+|++|||||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 999999887332322 1 2455555667889999998852 233444 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecC
Q 005545 264 PTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR 321 (691)
Q Consensus 264 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~ 321 (691)
||.|.|.-++.+|.+++++|+++|++||++|-+. +++..+||||++|++|+++..=+
T Consensus 428 PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 428 PTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999995 67899999999999999986433
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=5.3e-30 Score=242.79 Aligned_cols=195 Identities=30% Similarity=0.473 Sum_probs=168.5
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHH
Q 005545 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLET 191 (691)
Q Consensus 116 L~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~ 191 (691)
|-.+|+.+..||++-++|||||||||||-.++|++ +.+|+|.++|+++.. ++.+.-+|..|+..-...|-|..+
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~--~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCC--CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 67899999999999999999999999999999976 459999999999864 566778899988765556888888
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhh-----CC--CEEEEeCC
Q 005545 192 LSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV-----NP--SCLLLDEP 264 (691)
Q Consensus 192 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~-----~P--~iLlLDEP 264 (691)
|.. .. +.++....++++...++|.+...+.+ ..|||||.|||-+|...+. || ++|+||||
T Consensus 93 L~L----~q----P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 93 LTL----HQ----PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred hhh----cC----chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 754 22 33556667889999999998877665 4699999999999977663 45 69999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545 265 TSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 265 tsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
.++||...+..+-++|.+++++|.+||++.||.+. ..+.+|++++|++|+++..|..+|++
T Consensus 160 ~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 160 MNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999999999999999999764 67899999999999999999999985
No 373
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=275.33 Aligned_cols=206 Identities=30% Similarity=0.449 Sum_probs=169.4
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
....++++|+++.|.. .+.+++|+||.|.+|+.+||+||||+|||||||+|+|.. ++.+
T Consensus 318 g~~vl~~~~~~~~y~~--------------------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~-~~~~ 376 (530)
T COG0488 318 GKLVLEFENVSKGYDG--------------------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL-GPLS 376 (530)
T ss_pred CCeeEEEeccccccCC--------------------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc-ccCC
Confidence 4568999999999962 146999999999999999999999999999999999976 4669
Q ss_pred eEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCC
Q 005545 156 GKITYNGRQFSSSLKRKTGFVTQDD-VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGP 233 (691)
Q Consensus 156 G~I~~~G~~~~~~~~~~igyv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~ 233 (691)
|+|.+.- .-.+||..|+. .+.+..|+.|++.-.. |. .. ...+...|..+++.. ...+++
T Consensus 377 G~v~~g~-------~v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~-~~----e~~~r~~L~~f~F~~~~~~~~v--- 437 (530)
T COG0488 377 GTVKVGE-------TVKIGYFDQHRDELDPDKTVLEELSEGF----PD-GD----EQEVRAYLGRFGFTGEDQEKPV--- 437 (530)
T ss_pred ceEEeCC-------ceEEEEEEehhhhcCccCcHHHHHHhhC----cc-cc----HHHHHHHHHHcCCChHHHhCch---
Confidence 9998742 23599999986 4557889999886321 11 11 456788999999964 334555
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
+.||||||.|+.+|+.++.+|.+|||||||+.||..+...+.+.|.+.. -|||++||| ...+.+++++++.+.+
T Consensus 438 --~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---Gtvl~VSHD-r~Fl~~va~~i~~~~~ 511 (530)
T COG0488 438 --GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE---GTVLLVSHD-RYFLDRVATRIWLVED 511 (530)
T ss_pred --hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC---CeEEEEeCC-HHHHHhhcceEEEEcC
Confidence 4699999999999999999999999999999999999999999998873 599999999 4679999999999998
Q ss_pred CeEE-EecCHhHHHHH
Q 005545 314 GSPI-YSGRAAQVMDY 328 (691)
Q Consensus 314 G~iv-~~G~~~~~~~~ 328 (691)
++. +.|..++..+.
T Consensus 512 -~~~~~~g~y~~y~~~ 526 (530)
T COG0488 512 -KVEEFEGGYEDYLEQ 526 (530)
T ss_pred -ceeEcCCCHHHHHHh
Confidence 554 44777665543
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=1.3e-28 Score=246.57 Aligned_cols=164 Identities=18% Similarity=0.287 Sum_probs=130.6
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--------CCCceEEEECCEeCCh-hccccEEEEccCCCCCCCCC
Q 005545 117 NGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--------GKFSGKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLT 187 (691)
Q Consensus 117 ~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--------~~~~G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lT 187 (691)
+++++++++| +++|+||||||||||+++|+|++. .+..|++.++|++... ..++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999998752 1224578888877643 3356899999998766
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 005545 188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEML----VNPSCLLLDE 263 (691)
Q Consensus 188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~P~iLlLDE 263 (691)
|.. . . .++++++++. .+..++.+ +.||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~-----~----~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I-----S----QGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E-----e----hhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 0 2355666666 33445444 569999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 264 PTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 264 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
||+|||+..+..+.+.|+++++ +.|||++||++. . .+.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 9999999999999999999976 689999999974 3 478999999975
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2.8e-27 Score=243.96 Aligned_cols=189 Identities=19% Similarity=0.294 Sum_probs=134.7
Q ss_pred ccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC---------------CCCce--------EEEECCEe
Q 005545 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR---------------GKFSG--------KITYNGRQ 164 (691)
Q Consensus 108 ~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~---------------~~~~G--------~I~~~G~~ 164 (691)
|+|+.+.++++++ |++++|+||||||||||+++|++.+. .+.+| +|.+++.+
T Consensus 10 ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~ 84 (243)
T cd03272 10 KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSD 84 (243)
T ss_pred cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCC
Confidence 4455667888887 78999999999999999999984320 12234 66665532
Q ss_pred ----CC-h--hccccEEEEccCCCCCC-CCCHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCCCC
Q 005545 165 ----FS-S--SLKRKTGFVTQDDVLYP-HLTVLETLSYAALLRLPKKLTRE-EKIEQAEMVIMELGLTRCRNSVVGGPLF 235 (691)
Q Consensus 165 ----~~-~--~~~~~igyv~Q~~~l~~-~lTV~E~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 235 (691)
+. . ..++.++|++|+..+++ ..|..|...+.....+....... ....+ +.+.+++.+..+..+
T Consensus 85 ~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~---i~~l~~l~~~~~~~~----- 156 (243)
T cd03272 85 NRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGK---INSLTNMKQDEQQEM----- 156 (243)
T ss_pred CccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCc---hHHhhhccccccccc-----
Confidence 11 1 35677999999888877 46777766555443322110000 00112 233344444444433
Q ss_pred cccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 236 RGISGGERKRVSIGQEMLV----NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++++|+++|++ ++.+.||++++|
T Consensus 157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l 233 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGV 233 (243)
T ss_pred cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEE
Confidence 5799999999999999974 5899999999999999999999999999976 78899999984 467999999998
Q ss_pred c
Q 005545 312 S 312 (691)
Q Consensus 312 ~ 312 (691)
.
T Consensus 234 ~ 234 (243)
T cd03272 234 K 234 (243)
T ss_pred E
Confidence 5
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=2.5e-28 Score=247.19 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=137.0
Q ss_pred ccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCC
Q 005545 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLT 187 (691)
Q Consensus 108 ~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lT 187 (691)
|+++.+.+++++++ ++++|+||||||||||+++|.- ++|.+.....++++++++|+..+++.+|
T Consensus 12 k~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-----------~~G~~~~~~~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 12 KSYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-----------VFGFRASKMRQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred ccCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-----------HhccCHHHhhhhhHHHHhcCCCCCCCCc
Confidence 34556779999987 8999999999999999999972 2233222222357999999998999999
Q ss_pred HHHHHHHHHhhcC-----CCCCCHHHHHH--HHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhh----CC
Q 005545 188 VLETLSYAALLRL-----PKKLTREEKIE--QAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV----NP 256 (691)
Q Consensus 188 V~E~l~~~~~~~~-----~~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~----~P 256 (691)
+.|.+.+...... -.....++... ..+++++.++|++..++.+ +.||+|||||++||++++. +|
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p 150 (212)
T cd03274 76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPT 150 (212)
T ss_pred eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCC
Confidence 9997765432210 00111111110 1255667778877777765 4699999999999999974 47
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 257 SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 257 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
+++++||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.+.||++++|..
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999999999999999999999865 57888888994 57899999999975
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=4.2e-27 Score=244.30 Aligned_cols=183 Identities=17% Similarity=0.198 Sum_probs=135.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCE-eCCh------hccccEEEEccCC---------CCCCCCCHH
Q 005545 126 GELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-QFSS------SLKRKTGFVTQDD---------VLYPHLTVL 189 (691)
Q Consensus 126 Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~-~~~~------~~~~~igyv~Q~~---------~l~~~lTV~ 189 (691)
..+++|+||||||||||+++|++.+.+...|++.+.|. ++-. ..+..+++++|++ .+.+.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 44999999999999999999999874333578888776 3211 1234799999985 346688999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCCCCcccCHHHHHHHHHHHHHh-
Q 005545 190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS---------------VVGGPLFRGISGGERKRVSIGQEML- 253 (691)
Q Consensus 190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSGGerqRv~IA~aL~- 253 (691)
+++......+.... .+....+++.++++.+|+...... ..-+..++.||||||||++||++|+
T Consensus 105 r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 88765432111000 122234678889999998611000 0111234679999999999999998
Q ss_pred ---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 254 ---VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 254 ---~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
.+|+++++||||+|||+..+..+.+.|+++++ |.|+|++||++ ++.+.||+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 57899999999999999999999999999964 88999999994 5678899998775
No 378
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=4e-25 Score=239.52 Aligned_cols=222 Identities=24% Similarity=0.354 Sum_probs=186.7
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
.++.|+++||+..-.. ....++||||++++||+++|.|-.|-|-+.|+.+|+|+. ++.+
T Consensus 254 g~~vL~V~~L~v~~~~--------------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr-~~~~ 312 (501)
T COG3845 254 GEVVLEVEDLSVKDRR--------------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR-KPAS 312 (501)
T ss_pred CCeEEEEeeeEeecCC--------------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC-ccCC
Confidence 4678999999876542 135799999999999999999999999999999999965 3557
Q ss_pred eEEEECCEeC-C---h--hccccEEEEccCCC---CCCCCCHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHHHHcCC
Q 005545 156 GKITYNGRQF-S---S--SLKRKTGFVTQDDV---LYPHLTVLETLSYAALLRL----PKKLTREEKIEQAEMVIMELGL 222 (691)
Q Consensus 156 G~I~~~G~~~-~---~--~~~~~igyv~Q~~~---l~~~lTV~E~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL 222 (691)
|+|.++|+++ . . ..+..++|||+|.. +-+.+|+.||+.+....+- ..-....+..+.+++++++++.
T Consensus 313 G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdV 392 (501)
T COG3845 313 GRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV 392 (501)
T ss_pred ceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCc
Confidence 9999999996 2 2 23458999999864 7789999999987653221 1124566777888999999988
Q ss_pred Ccc-ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH
Q 005545 223 TRC-RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRL 301 (691)
Q Consensus 223 ~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i 301 (691)
... .++ ..+.||||++||+-+||+|..+|++|++.+||.|||..+.+.|.+.|.+++++|+.|++++-+. +++
T Consensus 393 r~~~~~~-----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEi 466 (501)
T COG3845 393 RAPSPDA-----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEI 466 (501)
T ss_pred cCCCCCc-----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHH
Confidence 622 222 2467999999999999999999999999999999999999999999999999999999999995 679
Q ss_pred HhcCCEEEEecCCeEEEecCHhH
Q 005545 302 YRMFDKVVVLSEGSPIYSGRAAQ 324 (691)
Q Consensus 302 ~~~~D~v~~L~~G~iv~~G~~~~ 324 (691)
+.++|||.+|++|+++...++++
T Consensus 467 l~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 467 LELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred HHhhheeeeeeCCceeccccccc
Confidence 99999999999999998887765
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=1.4e-25 Score=227.32 Aligned_cols=179 Identities=20% Similarity=0.198 Sum_probs=126.2
Q ss_pred eceEEEEe-CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECC--EeCC-hhccccEEEEccCCCCCCCCCHHHHH
Q 005545 117 NGVSGMVK-PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG--RQFS-SSLKRKTGFVTQDDVLYPHLTVLETL 192 (691)
Q Consensus 117 ~~vs~~i~-~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G--~~~~-~~~~~~igyv~Q~~~l~~~lTV~E~l 192 (691)
++++|... +|++++|+||||||||||+++|++.+.++..+....+. ..+. ...+..+++++|++... .++.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~--~~~~r~- 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKK--YRVERS- 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeE--EEEEEe-
Confidence 45566543 58999999999999999999999755444344444321 0111 13345799999986421 111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhh----------CCCEEEEe
Q 005545 193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV----------NPSCLLLD 262 (691)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~----------~P~iLlLD 262 (691)
+ ..+.++..+.+ .++..++.+..+..+ ..||||||||++||++|+. +|++++||
T Consensus 95 --------~-gl~~~~~~~~~--~l~~g~l~~~l~~~~-----~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD 158 (213)
T cd03279 95 --------R-GLDYDQFTRIV--LLPQGEFDRFLARPV-----STLSGGETFLASLSLALALSEVLQNRGGARLEALFID 158 (213)
T ss_pred --------c-CCCHHHHHHhh--hhhhcchHHHhcCCc-----cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe
Confidence 1 22332222211 233333444444443 5699999999999999985 57899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 263 EPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 263 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
|||+|||+.+...+.+.|++++++|+|||++||++. .+...+|+++++++|.
T Consensus 159 Ep~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 159 EGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 999999999999999999999877899999999974 5778999999999874
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=8.7e-25 Score=270.11 Aligned_cols=138 Identities=25% Similarity=0.362 Sum_probs=113.2
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCcccCHHHHHHHHHHHHHh---hCCC
Q 005545 182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-RNSVVGGPLFRGISGGERKRVSIGQEML---VNPS 257 (691)
Q Consensus 182 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~---~~P~ 257 (691)
.+...||.|+|.++..-........++..+++ ++++.+||.+. .+..+ ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 56678999999886542211112234445566 48899999865 56554 469999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec------CCeEEEecCHhHHHH
Q 005545 258 CLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS------EGSPIYSGRAAQVMD 327 (691)
Q Consensus 258 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 327 (691)
+|||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999988999999999975 45 8999999996 799999999998754
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=1.1e-25 Score=226.62 Aligned_cols=165 Identities=19% Similarity=0.285 Sum_probs=124.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHH----cCCCCCCceEEEECCEeCCh-hccccEEEEccCC-----CCCCCCC
Q 005545 118 GVSGMVKPGELLAMLGPSGSGKTTLLTALA----GRLRGKFSGKITYNGRQFSS-SLKRKTGFVTQDD-----VLYPHLT 187 (691)
Q Consensus 118 ~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~----G~~~~~~~G~I~~~G~~~~~-~~~~~igyv~Q~~-----~l~~~lT 187 (691)
..++++.+| +++|+|||||||||||++|. |.. .+.+|.+..+...+.. ..+..+++++|++ .....+|
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~-~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGEL-PPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCC-CcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 344667788 99999999999999999995 755 3445655522222221 3455799999987 3455568
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHH------HHHHHHHhhCCCEEEE
Q 005545 188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKR------VSIGQEMLVNPSCLLL 261 (691)
Q Consensus 188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR------v~IA~aL~~~P~iLlL 261 (691)
+.|++.+. ... .+++.+ +. .++.||+||||| ++||++++.+|+++++
T Consensus 93 ~~~~~~~~---------~~~----~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFC---------HQG----ESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeee---------chH----HHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 88887542 111 122222 22 235799999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 262 DEPTSGLDSTTAQ-RIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 262 DEPtsgLD~~~~~-~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
||||++||+..+. .+.++|++++++ |.|||++||++. ....+|+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 899999999964 3468999999965
No 382
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.4e-26 Score=241.16 Aligned_cols=204 Identities=23% Similarity=0.303 Sum_probs=165.1
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I 158 (691)
.|++||+.|.|.... -=+..||++|+.||++-|+|.||||||||+++|.|+. .|.+|+|
T Consensus 322 ~lelrnvrfay~~~~--------------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~-~PqsG~I 380 (546)
T COG4615 322 TLELRNVRFAYQDNA--------------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY-QPQSGEI 380 (546)
T ss_pred ceeeeeeeeccCccc--------------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc-CCCCCce
Confidence 699999999998431 1378999999999999999999999999999999976 5789999
Q ss_pred EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545 159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
++||++++. ++|+-++-|+-|..+|+.+-- ++... ..+.++..++++.|.+...-+-|+-.
T Consensus 381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~------------~e~~a---s~q~i~~~LqrLel~~ktsl~d~~fs 445 (546)
T COG4615 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG------------PEGKA---SPQLIEKWLQRLELAHKTSLNDGRFS 445 (546)
T ss_pred eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC------------CccCC---ChHHHHHHHHHHHHhhhhcccCCccc
Confidence 999999964 567778888888888764211 11111 12356778888887665433333322
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG-LARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
.-.||.|||||+++-.||+-+-+|+++||=-+--||.-+..+.+.+-- |+++||||+.+|||- .-|..+||++.+++
T Consensus 446 ~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~ 523 (546)
T COG4615 446 NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRN 523 (546)
T ss_pred ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhc
Confidence 346999999999999999999999999999999999999999876654 566899999999993 46899999999999
Q ss_pred CeEEEec
Q 005545 314 GSPIYSG 320 (691)
Q Consensus 314 G~iv~~G 320 (691)
|++++.-
T Consensus 524 G~~~e~t 530 (546)
T COG4615 524 GQLSELT 530 (546)
T ss_pred Cceeecc
Confidence 9999764
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=5.6e-24 Score=253.41 Aligned_cols=126 Identities=25% Similarity=0.434 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCcccCHHHHHHHHHHHHHhhCC---CEEEE
Q 005545 186 LTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFRGISGGERKRVSIGQEMLVNP---SCLLL 261 (691)
Q Consensus 186 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P---~iLlL 261 (691)
+||.|++.|...+. + ..+..+.++.+||.+ ..+..+ +.||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999988865321 1 123457899999975 355544 469999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHHHH
Q 005545 262 DEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQVMD 327 (691)
Q Consensus 262 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 327 (691)
||||+|||+.+...+++.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999999999888999999999974 34 689999999 6899999999998854
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=243.06 Aligned_cols=197 Identities=29% Similarity=0.390 Sum_probs=156.8
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
.-.|+++||+..-+.. +..|++.++.+++||-+.|.||||||||||+|+|+|+- +--+|
T Consensus 390 ~~~i~~~nl~l~~p~~--------------------~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW-P~g~G 448 (604)
T COG4178 390 DHGITLENLSLRTPDG--------------------QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW-PWGSG 448 (604)
T ss_pred cceeEEeeeeEECCCC--------------------CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC-ccCCC
Confidence 4679999999887632 36899999999999999999999999999999999977 34467
Q ss_pred EEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-CCC
Q 005545 157 KITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG-PLF 235 (691)
Q Consensus 157 ~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~ 235 (691)
+|.+- ....+-|+||.|.+... |.+|-|.|+... ...+ .+.+.++|.++||++..++.-+. .--
T Consensus 449 ~I~~P-------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~ 513 (604)
T COG4178 449 RISMP-------ADSALLFLPQRPYLPQG-TLREALCYPNAA---PDFS----DAELVAVLHKVGLGDLAERLDEEDRWD 513 (604)
T ss_pred ceecC-------CCCceEEecCCCCCCCc-cHHHHHhCCCCC---CCCC----hHHHHHHHHHcCcHHHHHHHhccCcHh
Confidence 77543 12347899999998766 999999875421 1122 24577889999998765543221 133
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+.||+|||||+++||.|+++|++++|||.||+||+.++..++++|++-.. +.|||-+.|++. +..+.++.+-+.
T Consensus 514 ~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp-~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP-DATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred hhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCC-CCEEEEeccchh--hHHHHhhheeec
Confidence 56999999999999999999999999999999999999999999988443 689999999964 456667665554
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=7.9e-25 Score=212.96 Aligned_cols=228 Identities=20% Similarity=0.287 Sum_probs=176.6
Q ss_pred EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC---Cce
Q 005545 80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK---FSG 156 (691)
Q Consensus 80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~---~~G 156 (691)
|..+||+..+..+.+ ..++++++|+++..||+-+++|.||||||-..|+|+|..... +.-
T Consensus 4 LDIrnL~IE~~TsqG-----------------~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTAD 66 (330)
T COG4170 4 LDIRNLTIEFKTSQG-----------------WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTAD 66 (330)
T ss_pred ccccceEEEEecCCC-----------------ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhh
Confidence 567889988886543 356899999999999999999999999999999999965321 123
Q ss_pred EEEECCEeCCh----hcc----ccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHHcCCC
Q 005545 157 KITYNGRQFSS----SLK----RKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKL---TREEKIEQAEMVIMELGLT 223 (691)
Q Consensus 157 ~I~~~G~~~~~----~~~----~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~ 223 (691)
...+++.++-+ ..| +.+++++|++. +-|.-+|...|.-....+.-++. .-.-+++++-++|.++|+.
T Consensus 67 R~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIK 146 (330)
T COG4170 67 RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIK 146 (330)
T ss_pred hcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccc
Confidence 44556655421 222 36789999986 56665665444321111110110 0112456778899999998
Q ss_pred ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHH
Q 005545 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLY 302 (691)
Q Consensus 224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~ 302 (691)
+..|-.- .++.+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++.+|.++|.++.+ +|.||++++||.. .+.
T Consensus 147 dHkDIM~--SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is 223 (330)
T COG4170 147 DHKDIMR--SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MIS 223 (330)
T ss_pred cHHHHHH--hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHH
Confidence 8776443 35668999999999999999999999999999999999999999999999986 6899999999965 588
Q ss_pred hcCCEEEEecCCeEEEecCHhHHHH
Q 005545 303 RMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 303 ~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
+.||++-||.-|+-++.++.+++++
T Consensus 224 ~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 224 QWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred HHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999875
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=5.4e-24 Score=231.60 Aligned_cols=216 Identities=25% Similarity=0.369 Sum_probs=147.9
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCc
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-KFS 155 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~~~ 155 (691)
.-.++++|+++++. ++.+++|+++++.+|+-++|+|+|||||||+|++|+|+..+ |..
T Consensus 73 s~dvk~~sls~s~~---------------------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~ 131 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH---------------------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEH 131 (614)
T ss_pred cccceeeeeeeccC---------------------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcc
Confidence 34688999988876 35689999999999999999999999999999999998642 222
Q ss_pred eEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH------------------hhcCCCCCCHHHHHHHHHHHH
Q 005545 156 GKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAA------------------LLRLPKKLTREEKIEQAEMVI 217 (691)
Q Consensus 156 G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~------------------~~~~~~~~~~~~~~~~v~~~l 217 (691)
=.++.-.+++.....+.+-+|.+. .-..+.-+.+-. ..|+ ..+..+....++..+|
T Consensus 132 ~d~y~ls~e~~ps~~~av~~v~~~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il 205 (614)
T KOG0927|consen 132 IDFYLLSREIEPSEKQAVQAVVME-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKIL 205 (614)
T ss_pred cchhhhcccCCCchHHHHHHHhhh-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHH
Confidence 233333333322111111111100 000000000000 0000 1122333444566666
Q ss_pred HHcCC-CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005545 218 MELGL-TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ 296 (691)
Q Consensus 218 ~~lgL-~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~ 296 (691)
..+|. .+..++.+ .++|||+|.|+++||+|..+|++|+|||||++||..+...+-+.|.+..+ .++|+++|.
T Consensus 206 ~glgf~~~m~~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~ 278 (614)
T KOG0927|consen 206 HGLGFLSEMQDKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS 278 (614)
T ss_pred HhcCCCHhHHHHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc
Confidence 66664 34445544 57999999999999999999999999999999999999999999887643 189999999
Q ss_pred CchHHHhcCCEEEEecCCe-EEEecCHhHHHH
Q 005545 297 PSSRLYRMFDKVVVLSEGS-PIYSGRAAQVMD 327 (691)
Q Consensus 297 p~~~i~~~~D~v~~L~~G~-iv~~G~~~~~~~ 327 (691)
. +.+-..|.+|+-|.+++ +.|.|+.++...
T Consensus 279 Q-Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 279 Q-DFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred h-hhhhhHhhhhheecccceeeecCCHHHHhh
Confidence 4 56889999999999999 556788776543
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=6.9e-23 Score=243.74 Aligned_cols=125 Identities=25% Similarity=0.420 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCcccCHHHHHHHHHHHHHhh---CCCEEE
Q 005545 185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFRGISGGERKRVSIGQEMLV---NPSCLL 260 (691)
Q Consensus 185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~---~P~iLl 260 (691)
.+||.|.+.|...+. . ..+..++++.+||.. ..++.+ +.|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467777777754321 1 113457889999975 345444 5799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHH
Q 005545 261 LDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQV 325 (691)
Q Consensus 261 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 325 (691)
|||||+|||+.++..+.+.|+++.++|.|||+++|++. .+ +.+|++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999988999999999974 34 679999999 78999999998875
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=8.1e-24 Score=230.24 Aligned_cols=206 Identities=23% Similarity=0.357 Sum_probs=158.9
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
.|..+.+.|++|.|+.. ..++++++|-|..++.+|++||||+|||||||++.|.+. |..
T Consensus 386 p~pvi~~~nv~F~y~~~--------------------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-p~~ 444 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN--------------------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-PTI 444 (614)
T ss_pred CCCeEEEeccccCCCCc--------------------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-ccc
Confidence 35679999999999732 158999999999999999999999999999999999874 678
Q ss_pred eEEEECCEeCChhccccEEEEccC--CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545 156 GKITYNGRQFSSSLKRKTGFVTQD--DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233 (691)
Q Consensus 156 G~I~~~G~~~~~~~~~~igyv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 233 (691)
|.|.-.-+ ..+++..|. +.+.-+.++.|++.=.. + .+...+.+..+|.++||.....+.
T Consensus 445 G~vs~~~H-------~~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~~~~~e~~r~ilgrfgLtgd~q~~---- 505 (614)
T KOG0927|consen 445 GMVSRHSH-------NKLPRYNQHLAEQLDLDKSSLEFMMPKF----P----DEKELEEMRSILGRFGLTGDAQVV---- 505 (614)
T ss_pred cccccccc-------ccchhhhhhhHhhcCcchhHHHHHHHhc----c----ccchHHHHHHHHHHhCCCcccccc----
Confidence 88864322 234444443 22333567777764211 1 122345678899999998444332
Q ss_pred CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
.++.||+|||+||..|+.++..|.+|+|||||+|||..+...+-+.|.+.. -+||+++||.. .+.++++++.+..+
T Consensus 506 p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---Ggvv~vSHDfr-lI~qVaeEi~~c~~ 581 (614)
T KOG0927|consen 506 PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---GGVVLVSHDFR-LISQVAEEIWVCEN 581 (614)
T ss_pred chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---Cceeeeechhh-HHHHHHHHhHhhcc
Confidence 246799999999999999999999999999999999999999999887763 48999999964 68899999999998
Q ss_pred CeE-EEecCHhHH
Q 005545 314 GSP-IYSGRAAQV 325 (691)
Q Consensus 314 G~i-v~~G~~~~~ 325 (691)
|.+ .+.|....-
T Consensus 582 ~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 582 GTVTKWDGDIEIY 594 (614)
T ss_pred CceeecCccHHHH
Confidence 765 466755443
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=7.8e-23 Score=204.96 Aligned_cols=170 Identities=22% Similarity=0.208 Sum_probs=122.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHH
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVL 189 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~ 189 (691)
-++++++++.+| +.+|+|||||||||||.+|...+.+... ....|..+.. .....+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~--~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~---- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS--DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN---- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc--cccccccHHHHhhCCCCeEEEEEEEEcCCccCC----
Confidence 357788888888 8899999999999999999853321110 0111221111 123457888887665541
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHH----hhCCCEEEEeCCC
Q 005545 190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEM----LVNPSCLLLDEPT 265 (691)
Q Consensus 190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL----~~~P~iLlLDEPt 265 (691)
.... ...++++++++. .+..++.+ +.||+|||||++||++| +.+|++++|||||
T Consensus 84 -------------~~~~-~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 84 -------------PLCV-LSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred -------------cCCH-HHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 0111 113456677766 44555554 57999999999999999 5899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC---CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545 266 SGLDSTTAQRIVATLRGLARG---GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 266 sgLD~~~~~~i~~~L~~l~~~---g~tii~~~H~p~~~i~~~~D~v~~L~~G~ 315 (691)
+|||+.++..+.+.|++++++ ++|||+++|++.. +.+ +|+|.+|..++
T Consensus 142 ~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 142 VFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 999999999999999998653 3689999999754 545 59999998764
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.88 E-value=3.6e-22 Score=213.32 Aligned_cols=173 Identities=25% Similarity=0.307 Sum_probs=139.5
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHH
Q 005545 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYA 195 (691)
Q Consensus 116 L~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~ 195 (691)
|+==+++|..||+++++||||-||||+.++|+|.+ .|++|+ . ..-+++|=||--.--...||++.|.-.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i-kPdeg~----~------~~~~vSyKPQyI~~~~~gtV~~~l~~~ 425 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI-KPDEGS----E------EDLKVSYKPQYISPDYDGTVEDLLRSA 425 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccc-cCCCCC----C------ccceEeecceeecCCCCCcHHHHHHHh
Confidence 55556778888999999999999999999999987 467886 1 123488888865444568999987644
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005545 196 ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275 (691)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~ 275 (691)
..-+.... -.-.++++-|+|++..++.+. +|||||.|||+||.+|..++++++||||++-||+..+..
T Consensus 426 ~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 426 IRSAFGSS-------YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred hhhhcccc-------hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH
Confidence 32211111 123467788899888888774 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 276 IVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 276 i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+.+.++++.. .++|.+++-||.. .+--++||+++.+
T Consensus 494 vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 494 VAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 9999999996 5889999999965 4677899998875
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.1e-22 Score=210.69 Aligned_cols=179 Identities=17% Similarity=0.233 Sum_probs=119.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEe-C-Ch---------hccccEEEEccCCCC-CCCCCHHHH
Q 005545 124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ-F-SS---------SLKRKTGFVTQDDVL-YPHLTVLET 191 (691)
Q Consensus 124 ~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~-~-~~---------~~~~~igyv~Q~~~l-~~~lTV~E~ 191 (691)
.++ +++|+|||||||||||++|++.+. +..|++..++.. + .. ...-.+.|..|++.. .-..++.+.
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~-~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~ 98 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLG-EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGG 98 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhC-CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECC
Confidence 344 999999999999999999999764 335666544321 1 00 111134444444321 001111111
Q ss_pred HHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccc---------cccC--------CCCcccCHHHHHHHHHHHHHh
Q 005545 192 LSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNS---------VVGG--------PLFRGISGGERKRVSIGQEML 253 (691)
Q Consensus 192 l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~--------~~~~~LSGGerqRv~IA~aL~ 253 (691)
.. .++.. +..+ .+.++++++.+|+...... .+.+ ..+..||||||||++||++++
T Consensus 99 ~~---~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~ 171 (247)
T cd03275 99 SS---SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFA 171 (247)
T ss_pred ce---EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHH
Confidence 00 00111 1112 2345688888998532111 1111 123679999999999999998
Q ss_pred hC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 254 VN----PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 254 ~~----P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
.+ |+++++||||+|||+..+..+.+.|++++++|.+||++||++ ++.+.+|++++|.+
T Consensus 172 ~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 172 IHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 75 899999999999999999999999999987799999999994 45689999999975
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.87 E-value=2.9e-21 Score=211.81 Aligned_cols=206 Identities=23% Similarity=0.288 Sum_probs=158.2
Q ss_pred cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545 76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS 155 (691)
Q Consensus 76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~ 155 (691)
.+..|+|++|+.+-+.+ +..+++|+|++|+.|+-+.|.||||||||+|+|+|+|+- +..+
T Consensus 430 ~Dn~i~~e~v~l~tPt~-------------------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW-p~~~ 489 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTN-------------------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW-PSTG 489 (659)
T ss_pred ccceEEeeeeeecCCCC-------------------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc-ccCC
Confidence 34789999999987642 245889999999999999999999999999999999977 4568
Q ss_pred eEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc------c
Q 005545 156 GKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS------V 229 (691)
Q Consensus 156 G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~------~ 229 (691)
|++.--...- -+.+-||||.|..--. |.||.+.|...---+ ..+....+++.+.|+.++|.|..+. .
T Consensus 490 G~l~k~~~~~----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~ 562 (659)
T KOG0060|consen 490 GKLTKPTDGG----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQ 562 (659)
T ss_pred CeEEecccCC----CCceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCch
Confidence 9887543211 1458899999986654 999999886321101 1111223456677777777654432 2
Q ss_pred ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
+-......||+||+||++.||-+.++|++-+|||.||++|......+.+.++++ |.|.|-+.|..+ +.+.=|.++
T Consensus 563 ~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L 637 (659)
T KOG0060|consen 563 VDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVL 637 (659)
T ss_pred hhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEE
Confidence 222233569999999999999999999999999999999999999999888765 899999999964 567778888
Q ss_pred EecC
Q 005545 310 VLSE 313 (691)
Q Consensus 310 ~L~~ 313 (691)
-|+.
T Consensus 638 ~~~g 641 (659)
T KOG0060|consen 638 RMDG 641 (659)
T ss_pred EecC
Confidence 8875
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.1e-22 Score=214.14 Aligned_cols=190 Identities=25% Similarity=0.334 Sum_probs=131.1
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccC-CCCCCCCCHHH
Q 005545 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQD-DVLYPHLTVLE 190 (691)
Q Consensus 112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~-~~l~~~lTV~E 190 (691)
.+.+|++-++++..|..++|+|+||+|||||||+|+. |.|. |-+...+.+ --+++-. +.+..+.++.+
T Consensus 92 ~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-------~~v~--~f~veqE~~--g~~t~~~~~~l~~D~~~~d 160 (582)
T KOG0062|consen 92 GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-------GQVS--GFHVEQEVR--GDDTEALQSVLESDTERLD 160 (582)
T ss_pred chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-------cCcC--ccCchhhee--ccchHHHhhhhhccHHHHH
Confidence 3679999999999999999999999999999999996 2221 222222221 1122222 12222333333
Q ss_pred HHHHHHhhcCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545 191 TLSYAALLRLPKKLTRE-EKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269 (691)
Q Consensus 191 ~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD 269 (691)
-+.-- +.+... +..+....+|..+|..+..... ..+.||||.|-|+++||||..+|+||||||||+.||
T Consensus 161 fl~~e------~~l~~~~~l~ei~~~~L~glGFt~emq~~----pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD 230 (582)
T KOG0062|consen 161 FLAEE------KELLAGLTLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD 230 (582)
T ss_pred HHHhh------hhhhccchHHHHHHHHHHhCCCCHHHHhc----cccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence 22111 011111 2233344488889987544322 235799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHH
Q 005545 270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVM 326 (691)
Q Consensus 270 ~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 326 (691)
..+...+.+.|+.+ +.|+|+++|| +..+-..|..|+-+++-|+- |.|..++..
T Consensus 231 v~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 231 VVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred hHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 99999999999886 3799999999 66677788887777765543 556555443
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.85 E-value=8.4e-21 Score=184.61 Aligned_cols=212 Identities=20% Similarity=0.271 Sum_probs=160.1
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
.-.|+++++.|+|+.. .+++-|+|++++.|....++|.||||||||||+|+|.. -.-.|
T Consensus 11 ~~aievsgl~f~y~~~--------------------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh-mv~~~ 69 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--------------------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH-MVGGG 69 (291)
T ss_pred cceEEEeccEEecccC--------------------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc-cccCC
Confidence 4579999999999853 25899999999999999999999999999999999953 22358
Q ss_pred EEEECCEeCCh---------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 005545 157 KITYNGRQFSS---------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG 221 (691)
Q Consensus 157 ~I~~~G~~~~~---------------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 221 (691)
.|.++|.+.-. ++.+..++-- +-.+-.++++.+.| |+.. .... + +-+.+++.+.
T Consensus 70 ~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g~dp-~---Rre~LI~iLD 138 (291)
T KOG2355|consen 70 VVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----GDDP-E---RREKLIDILD 138 (291)
T ss_pred eEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhcc-----CCCh-h---Hhhhhhhhee
Confidence 99999976411 2333333222 22233456776654 4321 1112 2 3345666666
Q ss_pred CCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchH
Q 005545 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSR 300 (691)
Q Consensus 222 L~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~ 300 (691)
+.-.. + ...+|-|||+||.|++-|++.=++|+|||-|--||..++.++++.|++-++ +|.|||..||--. -
T Consensus 139 Idl~W-R------mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-G 210 (291)
T KOG2355|consen 139 IDLRW-R------MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-G 210 (291)
T ss_pred ccceE-E------EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-c
Confidence 54211 1 134899999999999999999999999999999999999999999999886 5999999999965 4
Q ss_pred HHhcCCEEEEecCCeEEEecCHhHHHHH
Q 005545 301 LYRMFDKVVVLSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 301 i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 328 (691)
+.....+++.++.|+++-.-+.+++.++
T Consensus 211 Le~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 211 LETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred hhhcchhEEEecCCeeeeccccchhhhh
Confidence 6788999999999999986666666543
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=1e-20 Score=189.91 Aligned_cols=154 Identities=22% Similarity=0.169 Sum_probs=109.8
Q ss_pred eeeceEEEEeCCe-EEEEEcCCCCcHHHHHHHHH-cCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545 115 VLNGVSGMVKPGE-LLAMLGPSGSGKTTLLTALA-GRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192 (691)
Q Consensus 115 iL~~vs~~i~~Ge-~~aliGpsGsGKSTLL~~L~-G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l 192 (691)
-+.++|+++.+|+ +++|.||||||||||||+|+ +.+. ...|. .+...-...++|..|....+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~-~~~G~------~vp~~~~~~~~~~~~~~~~l--------- 79 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM-AQSGL------PIPAAEGSSLPVFENIFADI--------- 79 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH-HHcCC------CccccccccCcCccEEEEec---------
Confidence 3568999999995 89999999999999999998 2110 00110 00000001233433321111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005545 193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT 272 (691)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~ 272 (691)
+..+..+.. ...+|+|||||+.|+++ +.+|+++++|||++|||+..
T Consensus 80 ----------------------------g~~~~l~~~-----~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~ 125 (200)
T cd03280 80 ----------------------------GDEQSIEQS-----LSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVE 125 (200)
T ss_pred ----------------------------CchhhhhcC-----cchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHH
Confidence 111111111 13589999999999977 58999999999999999999
Q ss_pred HHHHH-HHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEec
Q 005545 273 AQRIV-ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320 (691)
Q Consensus 273 ~~~i~-~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G 320 (691)
+..+. ..++.+.+.|.++|++||+. ++.+.+|++..|.+|++.+.+
T Consensus 126 ~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 126 GAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99996 57888887789999999983 577999999999999998874
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.9e-20 Score=198.25 Aligned_cols=193 Identities=25% Similarity=0.405 Sum_probs=149.7
Q ss_pred ccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 005545 75 LHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF 154 (691)
Q Consensus 75 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~ 154 (691)
.+|..|-+.||+|.|+. .++++++++|-|.-...+||+||||.||||||++|.|.+. |.
T Consensus 582 L~PPvLGlH~VtFgy~g--------------------qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P~ 640 (807)
T KOG0066|consen 582 LNPPVLGLHDVTFGYPG--------------------QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PN 640 (807)
T ss_pred CCCCeeecccccccCCC--------------------CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-CC
Confidence 35677889999999873 2468899999999999999999999999999999999884 66
Q ss_pred ceEEEECCEeCChhccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545 155 SGKITYNGRQFSSSLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 155 ~G~I~~~G~~~~~~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
.|+..-| .|-+||+..|.. .|...-|.-|.|.-. +. ++.. .++..|..+||...++|.-
T Consensus 641 ~GE~RKn-------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~--FN----lpyq----~ARK~LG~fGL~sHAHTik-- 701 (807)
T KOG0066|consen 641 DGELRKN-------HRLRIGWFDQHANEALNGEETPVEYLQRK--FN----LPYQ----EARKQLGTFGLASHAHTIK-- 701 (807)
T ss_pred cchhhcc-------ceeeeechhhhhHHhhccccCHHHHHHHh--cC----CChH----HHHHHhhhhhhhhccceEe--
Confidence 7876533 345799988874 355556777766422 12 2222 3455788999988888753
Q ss_pred CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
++.||||||-||++|.--+..|+||||||||+.||..+...+.+.|++. .-.||+++||-. .+.+---.++|+.
T Consensus 702 --ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE 775 (807)
T KOG0066|consen 702 --IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVE 775 (807)
T ss_pred --eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEc
Confidence 4679999999999999899999999999999999999999999988876 347999999954 2434333556655
Q ss_pred C
Q 005545 313 E 313 (691)
Q Consensus 313 ~ 313 (691)
+
T Consensus 776 ~ 776 (807)
T KOG0066|consen 776 N 776 (807)
T ss_pred c
Confidence 4
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=3.5e-20 Score=187.83 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=68.0
Q ss_pred CcccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEeCCCchHHHhcCC--
Q 005545 235 FRGISGGERKRVSIGQEM----LVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-G-RTVITTIHQPSSRLYRMFD-- 306 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL----~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tii~~~H~p~~~i~~~~D-- 306 (691)
+..||||||||+.++++| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+... ..+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCce
Confidence 357999999999877554 5899999999999999999999999999999876 5 579999999654 456666
Q ss_pred EEEEecCCe
Q 005545 307 KVVVLSEGS 315 (691)
Q Consensus 307 ~v~~L~~G~ 315 (691)
+|++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
No 398
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.83 E-value=1e-21 Score=195.58 Aligned_cols=205 Identities=24% Similarity=0.470 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHH-hhcchhH-HHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005545 427 EQFKVLLKRGLQE-RKHESYS-YLRIFQVLSVSILSGLLWWHSDR-SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERA 503 (691)
Q Consensus 427 ~Q~~~L~~R~~~~-~r~~~~~-~~r~~~~i~~all~G~lf~~~~~-~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~ 503 (691)
+|++.|++|+++. +|++... ...++..++.++++|.+|.+.++ .+..++.|++++.....++....+....+..||.
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERG 80 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcc
Confidence 5999999999986 6888776 78999999999999999998764 2233678888887777665555555577889999
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 005545 504 MLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDV 583 (691)
Q Consensus 504 v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~ 583 (691)
.+.||+.++.|++.+|++||.+.+++..++.++++.++.|++.|++.+ +|+.+++++++..+++.++|.++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 158 (210)
T PF01061_consen 81 TLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSF 158 (210)
T ss_pred ccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhh
Confidence 999999999999999999999999999999999999999999999987 778888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHh
Q 005545 584 KQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQY 633 (691)
Q Consensus 584 ~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef 633 (691)
+.|..+.+++..++++++|.+++ ++|+|++|+.|+||++|++|++..++|
T Consensus 159 ~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 159 RDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999998 999999999999999999999998876
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=9.1e-20 Score=197.87 Aligned_cols=207 Identities=22% Similarity=0.306 Sum_probs=161.2
Q ss_pred cCccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 005545 73 ESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG 152 (691)
Q Consensus 73 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~ 152 (691)
....|..|++.+|+|.|..+. -.++.+++..++.-+..+++|+||+||||++|++.|-+.
T Consensus 356 e~~~~p~l~i~~V~f~y~p~~-------------------y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~- 415 (582)
T KOG0062|consen 356 EVLSPPNLRISYVAFEYTPSE-------------------YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT- 415 (582)
T ss_pred CcCCCCeeEEEeeeccCCCcc-------------------hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC-
Confidence 445678899999999987431 147889999999999999999999999999999999764
Q ss_pred CCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccc
Q 005545 153 KFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-RNSVVG 231 (691)
Q Consensus 153 ~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg 231 (691)
|..|.+.+++ |.+++|-.|...-+-.+.|-+- .+....+ .+..++ .++.-+..+||+.. +..
T Consensus 416 ~~rgi~~~~~-------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~~e----e~r~hl~~~Gl~g~la~~--- 478 (582)
T KOG0062|consen 416 PTRGIVGRHP-------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGKTEE----EIRRHLGSFGLSGELALQ--- 478 (582)
T ss_pred cccceeeecc-------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCCCHH----HHHHHHHhcCCCchhhhc---
Confidence 4588877653 5679999997654434555443 2322222 233443 34556888999642 222
Q ss_pred CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
.+++||||||=||++|.....+|.+|+|||||+.||-.+-..+.+.|+.. +-.||++||| .+.+...|+.+++.
T Consensus 479 --si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvv 552 (582)
T KOG0062|consen 479 --SIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVV 552 (582)
T ss_pred --cccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEE
Confidence 24679999999999999999999999999999999999999999888887 3479999999 56788999999999
Q ss_pred cCCeEEE-ecCH
Q 005545 312 SEGSPIY-SGRA 322 (691)
Q Consensus 312 ~~G~iv~-~G~~ 322 (691)
.+|++.- .|..
T Consensus 553 e~g~vt~ieg~~ 564 (582)
T KOG0062|consen 553 EDGKVTPIEGGI 564 (582)
T ss_pred cCCcEEeeeccH
Confidence 9999874 3443
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=3.8e-20 Score=197.94 Aligned_cols=171 Identities=30% Similarity=0.453 Sum_probs=128.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE-----------ECCEeCChhcc----------ccEEEEccCCC
Q 005545 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT-----------YNGRQFSSSLK----------RKTGFVTQDDV 181 (691)
Q Consensus 123 i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~-----------~~G~~~~~~~~----------~~igyv~Q~~~ 181 (691)
.++|++++|+|+||-||||-+|+|+|.+.+ .=|+-. +-|.++..-++ .+..||.--|.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~P-NLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKP-NLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCcccc-CCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 369999999999999999999999997743 233211 11211111011 12233332233
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEE
Q 005545 182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLL 261 (691)
Q Consensus 182 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlL 261 (691)
.+.. ||.|-|.-. +..-..++++++++|.+..|+.+. .|||||-||++||.+++.+++++++
T Consensus 176 ~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~F 237 (591)
T COG1245 176 VVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFF 237 (591)
T ss_pred Hhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEE
Confidence 3322 666655311 112357889999999999998774 6999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 262 DEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 262 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
|||||-||...+....+.+++|++.+++||++.||. ..+--++|-|.++..
T Consensus 238 DEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 238 DEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred cCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 999999999999999999999999899999999996 456678999988863
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=5.4e-19 Score=174.29 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=68.4
Q ss_pred cCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 238 ISGGERKRVSIGQEML----VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 238 LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++. ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 7999999999999996 699999999999999999999999999999877899999999964 4578999999975
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.80 E-value=1.5e-19 Score=181.37 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=109.0
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l 192 (691)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. ..+++|.+.+++.+|+.|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI------LAQAGAPVCA-----SSFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH------HHHcCCEEec-----CccCcccceEEEeccchhcc
Confidence 45788887765 79999999999999999999998441 1124544422 13677877899999999998
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005545 193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT 272 (691)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~ 272 (691)
.++.. ....+ .++++++++.+++ .+|+++++|||++|+|+..
T Consensus 81 ~~~~s------~~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~ 122 (199)
T cd03283 81 RDGIS------YFYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRE 122 (199)
T ss_pred ccccC------hHHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHH
Confidence 76431 11222 2567777777652 6899999999999999999
Q ss_pred HHHHH-HHHHHHHhCCcEEEEEeCCCchHHHhc--CCEEEEec
Q 005545 273 AQRIV-ATLRGLARGGRTVITTIHQPSSRLYRM--FDKVVVLS 312 (691)
Q Consensus 273 ~~~i~-~~L~~l~~~g~tii~~~H~p~~~i~~~--~D~v~~L~ 312 (691)
+..+. .+++.+.+.|.|+|++||++. .+... .++|-.++
T Consensus 123 ~~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~~~~~~~v~~~~ 164 (199)
T cd03283 123 RQAASAAVLKFLKNKNTIGIISTHDLE-LADLLDLDSAVRNYH 164 (199)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCcHH-HHHhhhcCCCeEEEE
Confidence 98875 478888877899999999964 34333 34554443
No 403
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=4.3e-18 Score=211.32 Aligned_cols=198 Identities=25% Similarity=0.363 Sum_probs=145.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHH-HHHc----CCC---CCCceEEEECCEeCCh--------------hccc-
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLT-ALAG----RLR---GKFSGKITYNGRQFSS--------------SLKR- 171 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~-~L~G----~~~---~~~~G~I~~~G~~~~~--------------~~~~- 171 (691)
=|+|++.+|+-|.+++|.|-||||||||++ +|.- .+. ...+--|.+|..|+.. .+|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999996 4421 110 1223457777766631 0110
Q ss_pred ------------------------------cEEEEccCCCCC--------------------------------CCCCHH
Q 005545 172 ------------------------------KTGFVTQDDVLY--------------------------------PHLTVL 189 (691)
Q Consensus 172 ------------------------------~igyv~Q~~~l~--------------------------------~~lTV~ 189 (691)
.-|++.=+-.++ -.|||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 112221111111 246777
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhC---CCEEEEeCCCC
Q 005545 190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVN---PSCLLLDEPTS 266 (691)
Q Consensus 190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLDEPts 266 (691)
|.+.|... ..+..+.-+.|.++||.... .|. ....|||||.||+-||.+|..+ +.+++|||||+
T Consensus 1665 ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LGq-~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1665 EVAETFPF---------LKKIQKPLQALIDNGLGYLP---LGQ-NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred HHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CCC-cCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 77666421 11233456788999997543 232 2356999999999999999875 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec------CCeEEEecCHhHHHH
Q 005545 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS------EGSPIYSGRAAQVMD 327 (691)
Q Consensus 267 gLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 327 (691)
||++...+.+++.|++|.+.|.|||++.|++ ++.+.||.|+-|- .|+|++.|+++++.+
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999999999999999999999999999995 4667899999993 489999999999965
No 404
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.7e-18 Score=196.25 Aligned_cols=128 Identities=28% Similarity=0.462 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCC---CEEEE
Q 005545 185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNP---SCLLL 261 (691)
Q Consensus 185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P---~iLlL 261 (691)
.|||.|...|.... + ...+.-+.|..+||.... .|. ....|||||.|||-+|.+|..+. .+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~---LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIK---LGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEe---cCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 47888877775421 1 123445677888987532 332 33579999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHHHH
Q 005545 262 DEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQVMD 327 (691)
Q Consensus 262 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 327 (691)
||||+||-.....++++.|.+|.++|.|||++.|+. ++.+.+|.|+-| ..|+||..|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999995 477999999998 3589999999999976
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.78 E-value=9.9e-19 Score=185.12 Aligned_cols=185 Identities=27% Similarity=0.400 Sum_probs=140.8
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-------CCCceEEEECCEeCChhccccEEEEccCC-CC
Q 005545 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-------GKFSGKITYNGRQFSSSLKRKTGFVTQDD-VL 182 (691)
Q Consensus 111 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-------~~~~G~I~~~G~~~~~~~~~~igyv~Q~~-~l 182 (691)
....+|+|+|++++||++++|+|+|||||||||++|.|... .|++|.|.+--.. ..+.+|-+. .-
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~ 466 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCcccccc
Confidence 34679999999999999999999999999999999999532 2667877653221 123444432 12
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEe
Q 005545 183 YPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLD 262 (691)
Q Consensus 183 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 262 (691)
+..-|+.|++.- .+. +...+.++|++.||.+..--+ ...+.||-|||.|+.||.++..+|.+++.|
T Consensus 467 f~~~tilehl~s-----~tG------D~~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRS-----KTG------DLNAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhh-----ccC------chhHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 335677777531 111 122456789999997532211 123679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhc-CCEEEEecCCeEE
Q 005545 263 EPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRM-FDKVVVLSEGSPI 317 (691)
Q Consensus 263 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~-~D~v~~L~~G~iv 317 (691)
|--+-||+.++..+.+-|.+++++ |.|++++||.|. .+-.+ -|+++++.-|++.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 999999999999999999999974 999999999974 35555 6899988877654
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.78 E-value=2.8e-19 Score=182.35 Aligned_cols=152 Identities=19% Similarity=0.212 Sum_probs=115.5
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEE-EEccCCCCCCCCCHHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG-FVTQDDVLYPHLTVLET 191 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~ig-yv~Q~~~l~~~lTV~E~ 191 (691)
+.+.+|++++..+|++++|.||||+||||||++++- . .+..++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~-~-----------------~~la~~g~~vpa~~~~~~------- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV-I-----------------VLMAQIGCFVPCDSADIP------- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH-H-----------------HHHHHhCCCcCcccEEEe-------
Confidence 468999999999999999999999999999999982 1 1112233 5555432111
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 005545 192 LSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEM--LVNPSCLLLDEP---TS 266 (691)
Q Consensus 192 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL--~~~P~iLlLDEP---ts 266 (691)
.+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++||||| |+
T Consensus 72 --------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 --------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred --------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 122344555554332 246899999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecC
Q 005545 267 GLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR 321 (691)
Q Consensus 267 gLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~ 321 (691)
+||+..... .+++.+.+ .|.++|++||+ .++.+++|++..+.+|++...+.
T Consensus 124 ~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999988854 34455554 48999999997 46789999999999999987764
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=3.1e-18 Score=180.46 Aligned_cols=76 Identities=25% Similarity=0.408 Sum_probs=68.7
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 237 GISGGERKRVSIGQEMLV----NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
.||||||||+++|++++. +|+++++||||+|||+.+...+.+.|+++.+ +.|+|+++|++. +...+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999875 689999999974 468999999998
Q ss_pred CCe
Q 005545 313 EGS 315 (691)
Q Consensus 313 ~G~ 315 (691)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
No 408
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.76 E-value=2.1e-18 Score=186.95 Aligned_cols=170 Identities=22% Similarity=0.352 Sum_probs=123.5
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l 192 (691)
..++..++|.|++|--+.|+||||||||+|+|+|+|+- |...|...+ + ....+-|+||.|..- .-|.+|.+
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW-Pvy~g~L~~------P-~~~~mFYIPQRPYms-~gtlRDQI 565 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW-PVYNGLLSI------P-RPNNIFYIPQRPYMS-GGTLRDQI 565 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC-cccCCeeec------C-CCcceEeccCCCccC-cCccccee
Confidence 35889999999999999999999999999999999976 332333321 1 234599999998755 44677766
Q ss_pred HHHHh---hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC----CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005545 193 SYAAL---LRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP----LFRGISGGERKRVSIGQEMLVNPSCLLLDEPT 265 (691)
Q Consensus 193 ~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~----~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt 265 (691)
.|.-. .+ .++.+++ ..+.+|..+.|++....-.|=. ...-||||||||+++||.+-++|+.-+|||.|
T Consensus 566 IYPdS~e~~~-~kg~~d~----dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 566 IYPDSSEQMK-RKGYTDQ----DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred ecCCcHHHHH-hcCCCHH----HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 55321 01 1223332 3445566665554433322211 12349999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545 266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS 299 (691)
Q Consensus 266 sgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~ 299 (691)
|+..+.....+.+..++ .|.+.|-++|+|+-
T Consensus 641 sAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred cccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 99999888888877655 48999999999864
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=7.6e-18 Score=163.54 Aligned_cols=74 Identities=26% Similarity=0.418 Sum_probs=67.3
Q ss_pred cCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545 238 ISGGERKRVSIGQEMLV----NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~ 313 (691)
||+||+||++||++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|..
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 89999999999999987 78999999999999999999999999998766889999999964 4578999999864
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=2.6e-17 Score=196.75 Aligned_cols=136 Identities=26% Similarity=0.428 Sum_probs=109.7
Q ss_pred CCCCHHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCCCCcccCHHHHHHHHHHHHHhhCC
Q 005545 184 PHLTVLETLSYAALLRLPKKLT------REEKIEQAEMVIMELGLTRC-RNSVVGGPLFRGISGGERKRVSIGQEMLVNP 256 (691)
Q Consensus 184 ~~lTV~E~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P 256 (691)
-.+||.|.+.|.-.+.++.... .++..++++ .++.+||.+. .|+.+ ..|||||||||.||++|..+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhCC
Confidence 4689999988854432221100 013334454 6888899765 57666 469999999999999999997
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHHHH
Q 005545 257 --SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQVMD 327 (691)
Q Consensus 257 --~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 327 (691)
++++|||||+|||+..+..+.++|++|+++|.|||+++|++. ++ ..||+|++| ++|++++.|+++++..
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 999999999999999999999999999888999999999975 45 579999999 8999999999988753
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=5.9e-17 Score=193.34 Aligned_cols=135 Identities=25% Similarity=0.416 Sum_probs=106.3
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCCCCcccCHHHHHHHHHHHHHhhCC
Q 005545 184 PHLTVLETLSYAALLRLPKKLTR------EEKIEQAEMVIMELGLTRC-RNSVVGGPLFRGISGGERKRVSIGQEMLVNP 256 (691)
Q Consensus 184 ~~lTV~E~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P 256 (691)
-.|||.|.+.|...+.+...... .+..+++ +.+..+||... .++.+ ..|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence 36889998887655432211000 1112222 23677788654 45544 579999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHHH
Q 005545 257 --SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQVM 326 (691)
Q Consensus 257 --~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 326 (691)
+++||||||+|||+.....+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999988999999999964 44 589999999 899999999998875
No 412
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.1e-18 Score=181.73 Aligned_cols=216 Identities=23% Similarity=0.313 Sum_probs=152.1
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-CCCCc
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL-RGKFS 155 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~-~~~~~ 155 (691)
.+.|+++|.+.+.. .+.++.|.|+.|-.|..++|+||||-||||||+-|+.|- .-|..
T Consensus 262 a~DIKiEnF~ISA~---------------------Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn 320 (807)
T KOG0066|consen 262 AMDIKIENFDISAQ---------------------GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN 320 (807)
T ss_pred cccceeeeeeeecc---------------------cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC
Confidence 45677777666554 346889999999999999999999999999999999863 22223
Q ss_pred eEEEECCEeCCh-----------hccccEEEEccCCC-----CCCCCCHHHHHHH-HHhhcCCCCCCHHHHHHHHHHHHH
Q 005545 156 GKITYNGRQFSS-----------SLKRKTGFVTQDDV-----LYPHLTVLETLSY-AALLRLPKKLTREEKIEQAEMVIM 218 (691)
Q Consensus 156 G~I~~~G~~~~~-----------~~~~~igyv~Q~~~-----l~~~lTV~E~l~~-~~~~~~~~~~~~~~~~~~v~~~l~ 218 (691)
=+|++..+++-. .-.++...+..++. --...|+.|-|.- +..+|.. .....+.+++.+|.
T Consensus 321 IDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILA 397 (807)
T KOG0066|consen 321 IDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILA 397 (807)
T ss_pred CceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHh
Confidence 455555544310 00111222221111 1234577776542 2233321 12223456778899
Q ss_pred HcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS 298 (691)
Q Consensus 219 ~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~ 298 (691)
-+|.+.....+.. ...|||.|-||++||||..+|-+|.|||||+.||-.....+-+.|+.+. +|.++++||..
T Consensus 398 GLGFskEMQ~rPt----~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg 470 (807)
T KOG0066|consen 398 GLGFSKEMQERPT----TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG 470 (807)
T ss_pred hcCCChhHhcCCc----cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc
Confidence 9998765544333 3589999999999999999999999999999999999999989988885 69999999964
Q ss_pred hHHHhcCCEEEEecCCeEE-EecCHhH
Q 005545 299 SRLYRMFDKVVVLSEGSPI-YSGRAAQ 324 (691)
Q Consensus 299 ~~i~~~~D~v~~L~~G~iv-~~G~~~~ 324 (691)
.+-..|..|+-|++-++- |.|...-
T Consensus 471 -FLD~VCtdIIHLD~qkLhyYrGNY~~ 496 (807)
T KOG0066|consen 471 -FLDSVCTDIIHLDNQKLHYYRGNYTL 496 (807)
T ss_pred -hHHHHHHHHhhhhhhhhhhhcchHHH
Confidence 588899999999987765 4455443
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.5e-16 Score=165.38 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=62.2
Q ss_pred cccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC-
Q 005545 236 RGISGGERKRVSIGQEML---------VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF- 305 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~- 305 (691)
+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+ ++++|+.. .+...+
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~~-~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDLA-DFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCch-hccchhc
Confidence 448999999999999985 7999999999999999999999999998763 34 45555433 455666
Q ss_pred --CEEEEecCCeE
Q 005545 306 --DKVVVLSEGSP 316 (691)
Q Consensus 306 --D~v~~L~~G~i 316 (691)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 68999999985
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.69 E-value=8.3e-17 Score=161.79 Aligned_cols=156 Identities=15% Similarity=0.080 Sum_probs=104.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh
Q 005545 118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAAL 197 (691)
Q Consensus 118 ~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~ 197 (691)
..++++.+|++++|+|||||||||||++|++.......|... ...+..+++..|.. ..+...+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-------~~~~~~i~~~dqi~---~~~~~~d~i----- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-------PAESASIPLVDRIF---TRIGAEDSI----- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-------cccccccCCcCEEE---EEecCcccc-----
Confidence 344555689999999999999999999999632111122111 01122334432211 111111110
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005545 198 LRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277 (691)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~ 277 (691)
+.. .+.++++++ |++.+.+++.+|+++++|||++|||+.....+.
T Consensus 86 -----------------------------~~~-----~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 86 -----------------------------SDG-----RSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred -----------------------------cCC-----ceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 011 123565555 566677889999999999999999999988876
Q ss_pred H-HHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545 278 A-TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 278 ~-~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 325 (691)
. +++.+.+.+.++|++||++ ++.+.+|++..+..|++...++..++
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 5 5677777789999999994 45678999999999999988866444
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.67 E-value=1.6e-16 Score=159.90 Aligned_cols=136 Identities=21% Similarity=0.219 Sum_probs=98.9
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEE-EEccCCCCCCCCCHHH
Q 005545 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG-FVTQDDVLYPHLTVLE 190 (691)
Q Consensus 112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~ig-yv~Q~~~l~~~lTV~E 190 (691)
+..+.+|+++++++|++++|+||||+|||||++++++.. ...++| || +.....+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------------~la~~G~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA------------------IMAQIGCFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH------------------HHHHcCCCc---chhhcCccChh
Confidence 356899999999999999999999999999999999843 111122 33 33445567777
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545 191 TLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDS 270 (691)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~ 270 (691)
+|... ++..+..+... +.+|+|++|+ +.+.+++.+|+++++|||++|+|+
T Consensus 74 ~I~~~------------------------~~~~d~~~~~~-----S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 74 RLLSR------------------------LSNDDSMERNL-----STFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred heeEe------------------------cCCccccchhh-----hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 66321 11111111111 3589999965 556678899999999999999999
Q ss_pred HHHHHH-HHHHHHHHhCCcEEEEEeCCCc
Q 005545 271 TTAQRI-VATLRGLARGGRTVITTIHQPS 298 (691)
Q Consensus 271 ~~~~~i-~~~L~~l~~~g~tii~~~H~p~ 298 (691)
.....+ ...++.+.+.|.++|++||+..
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 876665 4578888878999999999953
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.62 E-value=1.2e-15 Score=155.12 Aligned_cols=158 Identities=20% Similarity=0.150 Sum_probs=110.1
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l 192 (691)
+.+.+|++++.++ ++++|+||||||||||||++++.... |+ .|..+.. .+..++++.| +++.+++.|++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l---~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~~l 86 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL---AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASDDL 86 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH---hc---cCCeecc-ccceecceee---EeccCCchhhh
Confidence 4589999999988 99999999999999999999874311 11 1222221 2345777764 56777887776
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCH--HHHHHHHHHHHHhhCCCEEEEeCC---CCC
Q 005545 193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISG--GERKRVSIGQEMLVNPSCLLLDEP---TSG 267 (691)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GerqRv~IA~aL~~~P~iLlLDEP---tsg 267 (691)
..+. |. .|+++++-+...+.+|++++|||| |++
T Consensus 87 s~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 87 AGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred ccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 4321 11 122333333344579999999999 888
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545 268 LDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 268 LD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 327 (691)
+|.... ...+++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..+++..
T Consensus 125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~~ 181 (216)
T cd03284 125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVVF 181 (216)
T ss_pred HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEEE
Confidence 887552 33455556665 88999999994 5778999988888899888777666543
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.60 E-value=2.8e-15 Score=156.78 Aligned_cols=139 Identities=26% Similarity=0.327 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 005545 127 ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP 201 (691)
Q Consensus 127 e~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~ 201 (691)
.-++|+||||||||||+++|+|.+ .+.+|+|.++|+++.. ++.+.+++++|.+ +.+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~-~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~-------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL-STGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP-------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc-CCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch--------
Confidence 578999999999999999999987 4679999999998842 3445678888865 334556655421
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005545 202 KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281 (691)
Q Consensus 202 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~ 281 (691)
+.+ |+ .......+|+++++|||++ ...+..+++
T Consensus 182 ----k~~--------------------------------~~-----~~~i~~~~P~villDE~~~------~e~~~~l~~ 214 (270)
T TIGR02858 182 ----KAE--------------------------------GM-----MMLIRSMSPDVIVVDEIGR------EEDVEALLE 214 (270)
T ss_pred ----HHH--------------------------------HH-----HHHHHhCCCCEEEEeCCCc------HHHHHHHHH
Confidence 000 00 1223336999999999974 344555555
Q ss_pred HHHhCCcEEEEEeCCCchH-H-----------HhcCCEEEEecCCeEEEecCHhHH
Q 005545 282 GLARGGRTVITTIHQPSSR-L-----------YRMFDKVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 282 ~l~~~g~tii~~~H~p~~~-i-----------~~~~D~v~~L~~G~iv~~G~~~~~ 325 (691)
.+. +|.++|+++|++... + ..+|||+++|++|+ ..|.++++
T Consensus 215 ~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 215 ALH-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHh-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 699999999985432 2 26799999999887 56666554
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.58 E-value=1e-14 Score=155.40 Aligned_cols=177 Identities=25% Similarity=0.334 Sum_probs=134.8
Q ss_pred cceeeceEEEEeCC-----eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCC
Q 005545 113 VSVLNGVSGMVKPG-----ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLT 187 (691)
Q Consensus 113 ~~iL~~vs~~i~~G-----e~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lT 187 (691)
+.-+.+..+.|+.| |++..+|.||.|||||+++++|++.+...|+|-. -.++|=||...-=..-|
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~----------lnVSykpqkispK~~~t 418 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV----------LNVSYKPQKISPKREGT 418 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc----------cceeccccccCccccch
Confidence 45677888888877 5789999999999999999999885443444432 23677777654333568
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545 188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG 267 (691)
Q Consensus 188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg 267 (691)
|++.+.-- .| +.-..-.-+.++++-|.+++..|.-+ .+|||||.|||+||..|=..+++++.|||.+-
T Consensus 419 vR~ll~~k--Ir-----~ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsAy 486 (592)
T KOG0063|consen 419 VRQLLHTK--IR-----DAYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSAY 486 (592)
T ss_pred HHHHHHHH--hH-----hhhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence 88876421 11 00111235677888888888777665 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-hCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 268 LDSTTAQRIVATLRGLA-RGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 268 LD~~~~~~i~~~L~~l~-~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
||+..+...-+.+++.- +.++|-.++.||..- ...++|||++..
T Consensus 487 lDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred cChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 99999999999999875 457899999999543 445889887653
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.48 E-value=1.2e-12 Score=143.15 Aligned_cols=77 Identities=25% Similarity=0.344 Sum_probs=64.9
Q ss_pred cccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC-
Q 005545 236 RGISGGERKRVSIGQEML---------VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF- 305 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~- 305 (691)
..+|+||+|++.||+.|+ .+|+|++||||+++||+..+..+++.|.++ +..+++|+|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence 458999999999999885 799999999999999999999999998765 357888988854 344443
Q ss_pred -CEEEEecCCeE
Q 005545 306 -DKVVVLSEGSP 316 (691)
Q Consensus 306 -D~v~~L~~G~i 316 (691)
++++.+.+|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57899999986
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.45 E-value=4.6e-14 Score=140.05 Aligned_cols=79 Identities=19% Similarity=0.117 Sum_probs=57.7
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV-ATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
.+|+|++|...+.+ .+.+|+++++|||++|+|+.....+. .+++.+.++ +.++|++||++ ++.+.+|+.--+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEE
Confidence 47887776433332 34599999999999999999887765 667778774 89999999996 467888764444444
Q ss_pred eEEE
Q 005545 315 SPIY 318 (691)
Q Consensus 315 ~iv~ 318 (691)
+...
T Consensus 138 ~~~~ 141 (185)
T smart00534 138 HMSA 141 (185)
T ss_pred EEEE
Confidence 4443
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.44 E-value=7.4e-13 Score=134.38 Aligned_cols=132 Identities=21% Similarity=0.170 Sum_probs=88.7
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCC-CCCCHHHHH
Q 005545 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLY-PHLTVLETL 192 (691)
Q Consensus 114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~-~~lTV~E~l 192 (691)
.+=+|+++.=..+.+++|.||||+|||||||.++....-...|...... .-.++|..|....+ ...++.++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~- 88 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSSG- 88 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhhc-
Confidence 3556666542223899999999999999999998421002245544321 23467777753211 11111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545 193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS--GGERKRVSIGQEMLVNPSCLLLDEPTSGLDS 270 (691)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~ 270 (691)
+| .-|-||++++++++.+|+++++|||++|+|+
T Consensus 89 ---------------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 89 ---------------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred ---------------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 12 3467899999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhC---CcEEEEEeCCCc
Q 005545 271 TTAQRI-VATLRGLARG---GRTVITTIHQPS 298 (691)
Q Consensus 271 ~~~~~i-~~~L~~l~~~---g~tii~~~H~p~ 298 (691)
.....+ ...++++.+. +.++|++||++.
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 865555 5688888764 358999999954
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.40 E-value=1.9e-13 Score=138.84 Aligned_cols=88 Identities=26% Similarity=0.457 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005545 211 EQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEML----VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286 (691)
Q Consensus 211 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~ 286 (691)
+.+.+.+...++... .+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.++
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~ 189 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ 189 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345556665555432 48999999999997764 467899999999999999999999999998754
Q ss_pred CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 287 GRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 287 g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
.-+|++||++ ..+..+|+.+.+.
T Consensus 190 -~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 190 -SQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp -SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred -cccccccccc--ccccccccccccc
Confidence 6789999994 5789999888664
No 423
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.39 E-value=1.1e-10 Score=119.86 Aligned_cols=221 Identities=18% Similarity=0.184 Sum_probs=150.3
Q ss_pred HHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCC---C--CchH--H--HHHHHHHHHHHHHHHHHHHHHHHH-HHHhhH
Q 005545 435 RGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHS---D--RSHI--Q--DQVGLLFFFSIFWGFFPLNNAIFV-FPQERA 503 (691)
Q Consensus 435 R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~---~--~~~~--~--~r~g~lff~~~~~~~~~~~~~i~~-f~~eR~ 503 (691)
|+++. .|++.....-+++.+++.++.|.++-+. + ..+. . --.|.+.+.....+.. .+... .-+|+.
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~---~~~~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF---SGISVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHhC
Confidence 44543 4666555556677777777777776432 1 1111 1 1123333222222211 11111 113333
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 005545 504 MLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDV 583 (691)
Q Consensus 504 v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~ 583 (691)
++.|=+ ..=.+...|+++|.+..++..++..+++..+.|++.+++. ..++.+++..++..++..++|.++++..++.
T Consensus 78 ~~~~~~-~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~ 154 (236)
T TIGR01247 78 FLKEIL-VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSM 154 (236)
T ss_pred HHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 333333 3333678999999999999999999999999888877554 3455555566667778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCccccccccccceecCCC
Q 005545 584 KQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVD 661 (691)
Q Consensus 584 ~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~~~~~g~~ 661 (691)
+.++.+.+++..+...+||.+.+ .+|+|++|+.+++|.+|+.|++-..-.++. +..
T Consensus 155 ~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~----------------------~~~ 212 (236)
T TIGR01247 155 EGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS----------------------PTF 212 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC----------------------ccc
Confidence 99999999999999999999888 999999999999999999998654333211 012
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 005545 662 NKLIDVAALTMMLVGYRLLAYV 683 (691)
Q Consensus 662 ~~w~~~~iL~~~~~~~~~l~~l 683 (691)
+.+.++++|+++.+++.+++..
T Consensus 213 ~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 213 PLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999888888887754
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.39 E-value=5.2e-13 Score=119.95 Aligned_cols=72 Identities=22% Similarity=0.120 Sum_probs=60.6
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTV 188 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV 188 (691)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ ++ ..|+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ti 71 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIRL 71 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhhH
Confidence 35899999999999999999999999999999985 6899999998743 345567777777 44 4699
Q ss_pred HHHHHH
Q 005545 189 LETLSY 194 (691)
Q Consensus 189 ~E~l~~ 194 (691)
+|||.+
T Consensus 72 ~~Ni~~ 77 (107)
T cd00820 72 RLNIFL 77 (107)
T ss_pred Hhhcee
Confidence 999976
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.37 E-value=6.9e-13 Score=141.62 Aligned_cols=187 Identities=27% Similarity=0.381 Sum_probs=126.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE----------ECCEeCCh--------hccc--cEEEEccCCCCC
Q 005545 124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT----------YNGRQFSS--------SLKR--KTGFVTQDDVLY 183 (691)
Q Consensus 124 ~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~----------~~G~~~~~--------~~~~--~igyv~Q~~~l~ 183 (691)
+||++.+++|-||-||||-|++|+|.++++..+... +-|.++.. .++. +..||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 699999999999999999999999988543221110 01111100 0000 011111111111
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005545 184 PHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDE 263 (691)
Q Consensus 184 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDE 263 (691)
..+|.++|. +...++..+++++.+.|.+..++-+. .|||||-||.+||++-+.+.++..+||
T Consensus 178 -k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 -KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred -HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecC
Confidence 113333321 11222345677888888887777664 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC-----CeEEEecCHhHHHHHh
Q 005545 264 PTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE-----GSPIYSGRAAQVMDYF 329 (691)
Q Consensus 264 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~-----G~iv~~G~~~~~~~~f 329 (691)
|.+-||...+..-...++.|..-.+=||++.||.+ .+-.+.|-+..|.. |-+.---+..+...-|
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF 309 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF 309 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence 99999999999999999999988889999999965 46678888888863 3333333445554443
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.36 E-value=1.3e-12 Score=154.80 Aligned_cols=130 Identities=22% Similarity=0.221 Sum_probs=91.1
Q ss_pred eEEEEeCC-eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCC-CCCCCCHHHHHHHHH
Q 005545 119 VSGMVKPG-ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDV-LYPHLTVLETLSYAA 196 (691)
Q Consensus 119 vs~~i~~G-e~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~ 196 (691)
+|+.+.+| ++++|.||||+|||||||+++|....+..| .+||.... .+ .+.+.+. .
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-----------------~~Vpa~~~~~~---~~~d~i~-~- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-----------------IPIPANEHSEI---PYFEEIF-A- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-----------------CCccCCccccc---cchhhee-e-
Confidence 78888887 999999999999999999999852111122 13333221 11 1111110 0
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005545 197 LLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276 (691)
Q Consensus 197 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i 276 (691)
+ ....+ .+ .+ ....+|+|+++++.|++.+ .+|+++|+|||++|+|+.....+
T Consensus 372 --~----i~~~~---si---~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~al 423 (771)
T TIGR01069 372 --D----IGDEQ---SI---EQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSAL 423 (771)
T ss_pred --e----cChHh---HH---hh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHH
Confidence 0 00100 11 11 1135899999999998876 89999999999999999999999
Q ss_pred -HHHHHHHHhCCcEEEEEeCCCc
Q 005545 277 -VATLRGLARGGRTVITTIHQPS 298 (691)
Q Consensus 277 -~~~L~~l~~~g~tii~~~H~p~ 298 (691)
..+|+.+.+.|.++|++||+..
T Consensus 424 a~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 424 AISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHhcCCEEEEECChHH
Confidence 5788888888999999999954
No 427
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.36 E-value=3.1e-11 Score=121.54 Aligned_cols=149 Identities=18% Similarity=0.159 Sum_probs=122.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005545 515 RLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTM 594 (691)
Q Consensus 515 ~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~ 594 (691)
+...++++|.+..++..+++.+++..+.|++.|++.. .++.+++++++..++..++|.++++++++...+. +.+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 5567899999999999999999999999999999864 5667777788888999999999999998765443 34445
Q ss_pred HHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCccccccccccceecCCCchHHHHHHHHH
Q 005545 595 LVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTM 672 (691)
Q Consensus 595 ~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~~~~~g~~~~w~~~~iL~~ 672 (691)
.+.++++|.+.+ .+|+|++|+.|++|++|+.+++-...+.+. ....|.++++|++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~-----------------------~~~~~~~~~~L~~ 190 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN-----------------------DGTLWQAVAVLLL 190 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-----------------------HHHHHHHHHHHHH
Confidence 566667887777 999999999999999999999876666431 1246888999999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 005545 673 MLVGYRLLAYVTLRMRQP 690 (691)
Q Consensus 673 ~~~~~~~l~~l~L~~~~~ 690 (691)
+.+++.++++...|+.|+
T Consensus 191 ~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 191 ILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 999999999999887664
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.34 E-value=7.7e-12 Score=127.53 Aligned_cols=134 Identities=20% Similarity=0.155 Sum_probs=88.7
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l 192 (691)
+.+.+|+++.+.+|++++|+||||+||||+++++++....+..|...... . -.++|..|- +-.+...|.+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~------~~~~~~~~i---~~~~~~~d~~ 87 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S------ATLSIFDSV---LTRMGASDSI 87 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c------eEEeccceE---EEEecCcccc
Confidence 46899999999999999999999999999999999832224456544321 1 123332221 1111111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545 193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS--GGERKRVSIGQEMLVNPSCLLLDEPTSGLDS 270 (691)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~ 270 (691)
. .++| ..|-+|++-...-+.+|+++|+|||.+|.|+
T Consensus 88 ~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~ 125 (222)
T cd03287 88 Q------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTST 125 (222)
T ss_pred c------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCCh
Confidence 0 0111 2234444444445568999999999999998
Q ss_pred HHHHHH-HHHHHHHHhC-CcEEEEEeCCCc
Q 005545 271 TTAQRI-VATLRGLARG-GRTVITTIHQPS 298 (691)
Q Consensus 271 ~~~~~i-~~~L~~l~~~-g~tii~~~H~p~ 298 (691)
.....+ ..+++.+.+. +.++|++||++.
T Consensus 126 ~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 126 HDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 877775 5778888875 889999999964
No 429
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.31 E-value=2.8e-12 Score=129.90 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 005545 240 GGERKRVSIGQEMLVNPSCLLLDEPT-----SGLDSTTAQRIVATLRGLAR 285 (691)
Q Consensus 240 GGerqRv~IA~aL~~~P~iLlLDEPt-----sgLD~~~~~~i~~~L~~l~~ 285 (691)
|-|++++.||++++.+|+++++|||| +|||+.+++.+.+.++++++
T Consensus 155 ~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 155 NFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred CHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 33999999999999999999999999 99999999999999999975
No 430
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.29 E-value=2.9e-11 Score=134.48 Aligned_cols=172 Identities=22% Similarity=0.280 Sum_probs=113.7
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeC---Ch---------hccccEEEEccCC
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF---SS---------SLKRKTGFVTQDD 180 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~---~~---------~~~~~igyv~Q~~ 180 (691)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|.. .+..|.|.+.|+.- .+ .+++.+.+|.+-+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 4689999 999999999999999999999999999976 46789999965433 21 2456788887643
Q ss_pred CCCCCCCHHHHHH--HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC-HHHHHHHHHHHHHhhCCC
Q 005545 181 VLYPHLTVLETLS--YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS-GGERKRVSIGQEMLVNPS 257 (691)
Q Consensus 181 ~l~~~lTV~E~l~--~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS-GGerqRv~IA~aL~~~P~ 257 (691)
. ++.+-.. +.+ -.+.|....-|- |..+- ...++ --|-+| ++.
T Consensus 224 ~-----~~~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dsltr~A~A~r-----Eis---- 268 (438)
T PRK07721 224 Q-----PALMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVTRVAMAQR-----EIG---- 268 (438)
T ss_pred C-----CHHHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChHHHHHHHH-----HHH----
Confidence 2 1222111 111 011122222221 11100 00111 011111 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545 258 CLLLDEP--TSGLDSTTAQRIVATLRGLAR--GGR-----TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 258 iLlLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 325 (691)
+.+.|| |+|+|+.....+.++++++.+ +|. ||++.+||.++ .+||++..+.+|+++.++...+-
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHHC
Confidence 123464 679999999999999999984 575 99999999764 78999999999999999987654
No 431
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.27 E-value=8.5e-12 Score=144.10 Aligned_cols=77 Identities=26% Similarity=0.384 Sum_probs=70.2
Q ss_pred cccCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 236 RGISGGERKRVSIGQEMLVN----PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~----P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+.+||||+||++||++++.. |++||+||||+|||+.++..+.+.|+++++ +++||++||+|. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 56899999999999999985 699999999999999999999999999985 799999999974 34689999999
Q ss_pred cCCe
Q 005545 312 SEGS 315 (691)
Q Consensus 312 ~~G~ 315 (691)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8864
No 432
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.24 E-value=5.9e-09 Score=108.65 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=150.8
Q ss_pred HHHHHHHHHH-hhc-chhHHHHHHHHHHHHHHHHHHhhCC-CC-ch--HHHHH--HHHHHHHHHHHHHHHHHHHH-HHH-
Q 005545 430 KVLLKRGLQE-RKH-ESYSYLRIFQVLSVSILSGLLWWHS-DR-SH--IQDQV--GLLFFFSIFWGFFPLNNAIF-VFP- 499 (691)
Q Consensus 430 ~~L~~R~~~~-~r~-~~~~~~r~~~~i~~all~G~lf~~~-~~-~~--~~~r~--g~lff~~~~~~~~~~~~~i~-~f~- 499 (691)
..+.+|+++. +|+ +......+++.++.-+++|..+-.. +. .+ ..+.. |++-+..++.++ ++... .+.
T Consensus 8 ~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~---~~~~~~~~~~ 84 (253)
T TIGR01291 8 AAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTAST---FETIYATFAR 84 (253)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3566899875 566 5555667777777777778776542 11 11 11111 222222222111 11111 111
Q ss_pred -HhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545 500 -QERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGA 578 (691)
Q Consensus 500 -~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a 578 (691)
+|+..+.|-+..-. ++..+++||++.+.-..++..++...+.+++ |..+. ...+..+.++++..++..++|.++|+
T Consensus 85 ~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~ 161 (253)
T TIGR01291 85 MRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLVAA 161 (253)
T ss_pred HHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444333333 6789999999999877777776655555444 44433 33444444555667777889999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCccccccccccce
Q 005545 579 IIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIK 656 (691)
Q Consensus 579 ~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~~~ 656 (691)
+.++.+.+..+..+++.+++.+||.+.+ ++|+|++|+.+++|+.|+.|++-..-+++. .
T Consensus 162 ~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~-----------------~-- 222 (253)
T TIGR01291 162 LAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP-----------------G-- 222 (253)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC-----------------c--
Confidence 9999999999999999999999998887 999999999999999999999654433211 0
Q ss_pred ecCCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005545 657 YLGVDNKLIDVAALTMMLVGYRLLAYVTLRMR 688 (691)
Q Consensus 657 ~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~ 688 (691)
.+.|.++++++++.+++.+++....|+.
T Consensus 223 ----~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 223 ----TQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1245678888888888888888877664
No 433
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.24 E-value=2.6e-11 Score=125.71 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=64.1
Q ss_pred CcccCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545 235 FRGISGGE--------RKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR-IVATLRGLARGGRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 235 ~~~LSGGe--------rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tii~~~H~p~~~i~~~~ 305 (691)
.+.+|||+ +||+++||++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+... ...+
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~ 200 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIF 200 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCC
Confidence 35589999 9999999999999999999 999999755554 54 56665567899999999643 6899
Q ss_pred CEEEEecCCeE
Q 005545 306 DKVVVLSEGSP 316 (691)
Q Consensus 306 D~v~~L~~G~i 316 (691)
|.|.+|+.|++
T Consensus 201 paI~vl~s~sr 211 (249)
T cd01128 201 PAIDILKSGTR 211 (249)
T ss_pred CeEEEcCCCCc
Confidence 99999999986
No 434
>PRK10869 recombination and repair protein; Provisional
Probab=99.24 E-value=2e-11 Score=140.24 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=69.9
Q ss_pred cccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 236 RGISGGERKRVSIGQEMLV----NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +...+|+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4589999999999999997 5899999999999999999999999999975 689999999974 45899999999
Q ss_pred cCCe
Q 005545 312 SEGS 315 (691)
Q Consensus 312 ~~G~ 315 (691)
+++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.21 E-value=2e-10 Score=131.60 Aligned_cols=138 Identities=22% Similarity=0.384 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH------HHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCC-
Q 005545 184 PHLTVLETLSYAALLRLPKKLTREEKIEQAEMV------IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNP- 256 (691)
Q Consensus 184 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P- 256 (691)
..|++.|.+.|...+.+... .+...+..++++ |..+||...--.+ ....|||||.||+-+|..+=++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R----~a~TLSGGEaQRIRLAtqiGS~Lt 501 (935)
T COG0178 427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSR----SAGTLSGGEAQRIRLATQIGSGLT 501 (935)
T ss_pred hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccc----cCCCcChhHHHHHHHHHHhcccce
Confidence 35778888877665543211 111112222333 4445775432111 22469999999999999997654
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHHHHH
Q 005545 257 -SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 257 -~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~~ 328 (691)
=+++||||+-||-+..-.++++.|++|++.|-|+|++.||+ +..+.+|+|+=| +.|+|++.|+++++++.
T Consensus 502 GVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 502 GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 47899999999999999999999999999999999999994 467899999998 56899999999999863
No 436
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.19 E-value=2.2e-11 Score=122.98 Aligned_cols=63 Identities=30% Similarity=0.491 Sum_probs=53.8
Q ss_pred cccCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545 236 RGISGGERKRVSIGQEMLVNP---SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS 298 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P---~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~ 298 (691)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 346999999999998888766 899999999999999999999999988876788999999974
No 437
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.18 E-value=7.2e-09 Score=106.38 Aligned_cols=220 Identities=14% Similarity=0.139 Sum_probs=138.8
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHhhCCC-CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHhhCCCCC
Q 005545 440 RKHESYSYLRIFQVLSVSILSGLLWWHSD-RSHIQD-QVGLLFFFSIFWGFFPLNNAIFVFPQER--AMLIKERSSGMYR 515 (691)
Q Consensus 440 ~r~~~~~~~r~~~~i~~all~G~lf~~~~-~~~~~~-r~g~lff~~~~~~~~~~~~~i~~f~~eR--~v~~rE~~~g~Y~ 515 (691)
.|+|.....-+.+.+++-++.+.++-+.. .+..+. -.|.+-+..+.. +....-.....|| ..+.|=+..-. +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVTHNRGATFIPVLMALAAIST---AFTGQAIAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccCCcchhHhhHHHHHHHHHHH---HHHHHHHHHHHHHHhCHHHHHhcCCC-c
Confidence 46666655555666666666666665421 112211 122222222221 1111222223333 45555555544 7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 005545 516 LSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIM---DVKQATALASV 592 (691)
Q Consensus 516 ~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~---~~~~A~~~~~~ 592 (691)
+..|+++|.+..+...++..+++. +++++.|++.....+ ..++...+..+.+.+++.+++++.+ +.+.+..++.+
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 889999999988888776655554 556677888654322 3333334445566667777777764 55555888888
Q ss_pred HHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCccccccccccceecCCCchHHHHHHH
Q 005545 593 TMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAAL 670 (691)
Q Consensus 593 ~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~~~~~g~~~~w~~~~iL 670 (691)
+..+++++||.+.+ .+|.|++|+.+++|++|+.+++-..-.++. +....|.+++++
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~----------------------~~~~~~~~~~~l 213 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV----------------------DTFGAVRDLVVV 213 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC----------------------ChhhHHHHHHHH
Confidence 89999999999998 999999999999999999998654432211 112457788888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005545 671 TMMLVGYRLLAYVTLRM 687 (691)
Q Consensus 671 ~~~~~~~~~l~~l~L~~ 687 (691)
+++.+++..++....||
T Consensus 214 ~~~~~v~~~la~~~~~r 230 (232)
T TIGR00025 214 LAFWVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 98888888888777654
No 438
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.18 E-value=3.4e-11 Score=143.09 Aligned_cols=81 Identities=23% Similarity=0.265 Sum_probs=64.1
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV-ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~-~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
..+|+|++|++.|++++ .+|+++|+|||++|+|+.....+. .+++.+.+.|.++|++||++. .....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-EE
Confidence 35899999999999988 899999999999999999999885 567888778999999999953 333445544443 45
Q ss_pred eEEEe
Q 005545 315 SPIYS 319 (691)
Q Consensus 315 ~iv~~ 319 (691)
.+.++
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 439
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=6.7e-11 Score=145.92 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=73.4
Q ss_pred CCcccCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545 234 LFRGISGGERKRVSIGQEMLV----------NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~ 303 (691)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|+++||++. ....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHh
Confidence 456799999999999999986 79999999999999999999999999999888999999999964 5788
Q ss_pred cCCEEEEecCC
Q 005545 304 MFDKVVVLSEG 314 (691)
Q Consensus 304 ~~D~v~~L~~G 314 (691)
++|+|.|+..|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999753
No 440
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.17 E-value=3.7e-11 Score=138.88 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=69.0
Q ss_pred CcccCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545 235 FRGISGGERKRVSIGQEML----------VNPSCLLLDEPT-SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~----------~~P~iLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~ 303 (691)
...||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ +|.|||++||++. ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence 3579999999999999887 599999999998 789999999999999999 5889999999964 457
Q ss_pred cCCEEEEecC-CeE
Q 005545 304 MFDKVVVLSE-GSP 316 (691)
Q Consensus 304 ~~D~v~~L~~-G~i 316 (691)
.+|++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 8999999986 553
No 441
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.16 E-value=2.3e-08 Score=104.03 Aligned_cols=231 Identities=13% Similarity=0.182 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCC-CC-------c--hH--HHHHHHHHHHHHHHHHHHHH
Q 005545 426 WEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHS-DR-------S--HI--QDQVGLLFFFSIFWGFFPLN 492 (691)
Q Consensus 426 ~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~-~~-------~--~~--~~r~g~lff~~~~~~~~~~~ 492 (691)
++++..+++|+++. .|++.....-+++.++.-++.|.+|-.. +. . +. .--.|++-+...+.++.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--- 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--- 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 36789999999986 5777666667788888888888887432 10 0 11 11112222222211111
Q ss_pred HHHH-HHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHH
Q 005545 493 NAIF-VFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQS 571 (691)
Q Consensus 493 ~~i~-~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~s 571 (691)
.+.. ...+|+..+.+=+.... +...+.++|++..+-..++..+++..+.+.. |.+.....++.....+++..++..+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 12233334444444444 7788999999999888887766655554433 6655544444444455556677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CC---cchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCcc
Q 005545 572 LGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HM---SPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLH 646 (691)
Q Consensus 572 lg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~i---p~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~ 646 (691)
+|+++|+++++.+.+..+.++++.+++..||.+.+ .+ |+|++|+.++||+.|..|++-.. +.+.
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g~---------- 224 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYGQ---------- 224 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhCC----------
Confidence 99999999999998988888888888889998765 44 88999999999999999887433 2221
Q ss_pred ccccccccceecCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 005545 647 CSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRM 687 (691)
Q Consensus 647 c~~~~~~~~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~ 687 (691)
..|..+++++++.+++.+++....|+
T Consensus 225 ---------------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 225 ---------------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred ---------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 01445566777777777777776655
No 442
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.15 E-value=2.9e-10 Score=116.76 Aligned_cols=150 Identities=18% Similarity=0.257 Sum_probs=91.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHH-HHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcC
Q 005545 122 MVKPGELLAMLGPSGSGKTTL-LTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRL 200 (691)
Q Consensus 122 ~i~~Ge~~aliGpsGsGKSTL-L~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~ 200 (691)
-+++|+++.|.|+|||||||| ++.+++... + | ..+.|+.. ..|..+.+.....+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~--g--------------~~~~yi~~------e~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ-N--G--------------YSVSYVST------QLTTTEFIKQMMSLGY 76 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-C--C--------------CcEEEEeC------CCCHHHHHHHHHHhCC
Confidence 478999999999999999999 688887542 1 2 12345543 2345555544332211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHH
Q 005545 201 PKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEML----VNPSCLLLDEPTSGL----DSTT 272 (691)
Q Consensus 201 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgL----D~~~ 272 (691)
.. + +.... +.-...+. ...+|+++.++-.+.+.+- .+|+++++||||+++ |+..
T Consensus 77 --~~--~-------~~~~~-~~l~~~~~------~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 77 --DI--N-------KKLIS-GKLLYIPV------YPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred --ch--H-------HHhhc-CcEEEEEe------cccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 10 0 11110 10000010 0135777665555544333 369999999999999 8888
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCch------HHHhcCCEEEEec
Q 005545 273 AQRIVATLRGLARGGRTVITTIHQPSS------RLYRMFDKVVVLS 312 (691)
Q Consensus 273 ~~~i~~~L~~l~~~g~tii~~~H~p~~------~i~~~~D~v~~L~ 312 (691)
...+.+.++.++++|.|+++++|+... .+..++|-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 889999999998888888777664321 1234567777776
No 443
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.12 E-value=5.4e-10 Score=110.14 Aligned_cols=77 Identities=22% Similarity=0.134 Sum_probs=64.3
Q ss_pred cccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEeCCCch-------
Q 005545 236 RGISGGERK------RVSIGQEMLVNPSCLLLDEPTSGLD---STTAQRIVATLRGLARGGRTVITTIHQPSS------- 299 (691)
Q Consensus 236 ~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tii~~~H~p~~------- 299 (691)
..+|+|++| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~ 149 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGG 149 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCc
Confidence 458999998 4444555667999999999999999 888888999999998889999999998643
Q ss_pred -HHHhcCCEEEEec
Q 005545 300 -RLYRMFDKVVVLS 312 (691)
Q Consensus 300 -~i~~~~D~v~~L~ 312 (691)
.+..++|.++.|+
T Consensus 150 ~~~~~~aD~ii~l~ 163 (187)
T cd01124 150 GDVEYLVDGVIRLR 163 (187)
T ss_pred CceeEeeeEEEEEE
Confidence 2568899999887
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.11 E-value=3.9e-10 Score=114.78 Aligned_cols=134 Identities=20% Similarity=0.189 Sum_probs=88.4
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l 192 (691)
+.+-+|+++..++|++++|.||||+||||+++++++...-... |..+... ...++++ +.++..+...|++
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~------G~~vpa~-~~~i~~~---~~i~~~~~~~d~~ 86 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQM------GMDVPAK-SMRLSLV---DRIFTRIGARDDI 86 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHc------CCccCcc-ccEeccc---cEEEEecCccccc
Confidence 4689999999999999999999999999999999984310001 2111111 1112221 1222222222222
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545 193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS--GGERKRVSIGQEMLVNPSCLLLDEPTSGLDS 270 (691)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~ 270 (691)
.. ++| ..|-+|++-....+.+|+++++|||.+|+|+
T Consensus 87 ~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 87 MK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred cc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 11 011 1234444444444578999999999999999
Q ss_pred HHHHHHHHH-HHHHHhC-CcEEEEEeCCCc
Q 005545 271 TTAQRIVAT-LRGLARG-GRTVITTIHQPS 298 (691)
Q Consensus 271 ~~~~~i~~~-L~~l~~~-g~tii~~~H~p~ 298 (691)
.....+... ++.+.+. +.++|++||++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 999999887 7888875 899999999953
No 445
>PRK13695 putative NTPase; Provisional
Probab=99.08 E-value=8.4e-11 Score=115.36 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=64.1
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEP--TSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~~P~iLlLDEP--tsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G 314 (691)
.+||+++-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|++..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCc
Confidence 4899999999999999999999999995 33444 445666676666789999999983 456789999999999
Q ss_pred eEEEec
Q 005545 315 SPIYSG 320 (691)
Q Consensus 315 ~iv~~G 320 (691)
++++.-
T Consensus 152 ~i~~~~ 157 (174)
T PRK13695 152 RVYELT 157 (174)
T ss_pred EEEEEc
Confidence 987764
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.08 E-value=3.5e-10 Score=121.18 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=95.7
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEe-CChhccccEEEEccCCC-CCCCCCHHHHHHHHH
Q 005545 119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ-FSSSLKRKTGFVTQDDV-LYPHLTVLETLSYAA 196 (691)
Q Consensus 119 vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~-~~~~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~ 196 (691)
+++.+++|+.++|.||+|||||||+++|++.+ ++..|.+.+++.. +....+..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~------------ 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLA------------ 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEcCccccCCCCCCEEEEEecCCCCCcC------------
Confidence 66788999999999999999999999999977 4556777765311 10001112222211100 000
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005545 197 LLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276 (691)
Q Consensus 197 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i 276 (691)
.++- .-.++.+|-.+|+++++|||.+ .+.
T Consensus 204 ----------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e~ 232 (308)
T TIGR02788 204 ----------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------DEA 232 (308)
T ss_pred ----------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence 0111 1134456778999999999996 355
Q ss_pred HHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545 277 VATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326 (691)
Q Consensus 277 ~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 326 (691)
.+.++.+...+.+++.|+|..+ +....||+..|..|++...|.+.+.+
T Consensus 233 ~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 6777777644456799999976 45679999999999988888777665
No 447
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.05 E-value=1e-09 Score=106.60 Aligned_cols=62 Identities=27% Similarity=0.434 Sum_probs=52.0
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS 298 (691)
Q Consensus 236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~ 298 (691)
...|.||-=---+.+. ..+--+++||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-
T Consensus 128 h~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 128 HHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 3469998654444433 3567899999999999999999999999999999999999999984
No 448
>PRK15066 inner membrane transport permease; Provisional
Probab=99.03 E-value=2.8e-07 Score=96.13 Aligned_cols=237 Identities=13% Similarity=0.151 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHh-hcchh-HHHHHHHHHHHHHHHHHHhhCC-CC-chH--HHH--HHHHHHHHHHHHHHHHHHHHH
Q 005545 425 WWEQFKVLLKRGLQER-KHESY-SYLRIFQVLSVSILSGLLWWHS-DR-SHI--QDQ--VGLLFFFSIFWGFFPLNNAIF 496 (691)
Q Consensus 425 ~~~Q~~~L~~R~~~~~-r~~~~-~~~r~~~~i~~all~G~lf~~~-~~-~~~--~~r--~g~lff~~~~~~~~~~~~~i~ 496 (691)
.|+-++.+.+|+++.. |+... ...-+++.++..++.|.++-.. +. .+. ... .|++-+.....+. ..+..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~---~~~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSY---SNVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 3667889999999874 44322 2233445555566666554321 11 111 111 1332222221111 11122
Q ss_pred HHHHhhHH-HHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545 497 VFPQERAM-LIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLL 575 (691)
Q Consensus 497 ~f~~eR~v-~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~ 575 (691)
.+.++|.. ..++...--.++..+.+++++...-..++..++...+.+...|.+.. ....++..+++..+.....|.+
T Consensus 83 ~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 22233311 01121222347788999999988777676666655555544466543 2233333333333333345888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCccccccccc
Q 005545 576 LGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFP 653 (691)
Q Consensus 576 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~ 653 (691)
+|.+.++.+.+..+.++++.+++..||.+.+ ++|+|++|+.+++|+.|..|++=..-+++.
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~~----------------- 223 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGIS----------------- 223 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCCC-----------------
Confidence 8888899888888999999999999998877 999999999999999999998743322110
Q ss_pred cceecCCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005545 654 AIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQ 689 (691)
Q Consensus 654 ~~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~~ 689 (691)
....|.++++++++.+++.+++....|+.+
T Consensus 224 ------~~~~~~~l~~l~~~~~v~~~la~~~~~r~~ 253 (257)
T PRK15066 224 ------DVPLWLAFAVLLVFIVVLYLLAWYLLERGR 253 (257)
T ss_pred ------CccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 013577889999999999999998887754
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.01 E-value=1.1e-09 Score=104.19 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=49.0
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchH
Q 005545 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTS----------GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSR 300 (691)
Q Consensus 238 LSGGerqRv~IA~aL~~~P~iLlLDEPts----------gLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~ 300 (691)
.+.++.++...+++...+|+++++||+++ +.|......+.+++..+.+.+.|+|+++|.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 35666778888889999999999999994 5555656666666666656699999999987543
No 450
>PRK03918 chromosome segregation protein; Provisional
Probab=99.00 E-value=8.7e-10 Score=134.13 Aligned_cols=78 Identities=29% Similarity=0.335 Sum_probs=68.4
Q ss_pred CCcccCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 234 LFRGISGGERKR------VSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 234 ~~~~LSGGerqR------v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
.+..|||||+++ ++||++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++ .+...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 346699999994 5556678899999999999999999999999999999887788999999996 35689999
Q ss_pred EEEecC
Q 005545 308 VVVLSE 313 (691)
Q Consensus 308 v~~L~~ 313 (691)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999984
No 451
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.99 E-value=1.1e-09 Score=134.74 Aligned_cols=79 Identities=28% Similarity=0.283 Sum_probs=69.5
Q ss_pred CCcccCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545 234 LFRGISGGERKRVSIGQEMLV--------NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~~--------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~ 305 (691)
.++.|||||++|++||++|+. +|++||+||||+|||+.+...+++.|..+++.|+||+++||.. ....++-
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhcc
Confidence 356799999999999999996 8999999999999999999999999999998899999999974 3455666
Q ss_pred CEEEEecC
Q 005545 306 DKVVVLSE 313 (691)
Q Consensus 306 D~v~~L~~ 313 (691)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67777654
No 452
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.99 E-value=8.6e-09 Score=123.88 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=61.1
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH--------HhcCCEEEEecCCeEEEecCH
Q 005545 253 LVNPSCLLLDEPTSGL-DSTTAQRIVATLRGLARGGRTVITTIHQPSSRL--------YRMFDKVVVLSEGSPIYSGRA 322 (691)
Q Consensus 253 ~~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i--------~~~~D~v~~L~~G~iv~~G~~ 322 (691)
..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||++.... .+.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999988999999999986421 368999999999998776643
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.92 E-value=5.4e-09 Score=104.96 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=42.3
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545 247 SIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS 312 (691)
Q Consensus 247 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~ 312 (691)
+|+++|..+|+++++|||. |..+...++ +.+..|..++.|+|.++. .+..||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4678899999999999996 555433333 345679999999999753 46788887664
No 454
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=3.6e-09 Score=133.35 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=61.0
Q ss_pred cccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEeCCCchHHHhc
Q 005545 236 RGISGGERK------RVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-----GGRTVITTIHQPSSRLYRM 304 (691)
Q Consensus 236 ~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~~~H~p~~~i~~~ 304 (691)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.+||++||++. .+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence 469999999 99999999999999999999999999999999999988742 3789999999964 46555
Q ss_pred C
Q 005545 305 F 305 (691)
Q Consensus 305 ~ 305 (691)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 455
>PRK01156 chromosome segregation protein; Provisional
Probab=98.88 E-value=5.8e-09 Score=127.24 Aligned_cols=77 Identities=25% Similarity=0.301 Sum_probs=66.4
Q ss_pred CCcccCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-cEEEEEeCCCchHHHhc
Q 005545 234 LFRGISGGERKRVSI------GQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RG-G-RTVITTIHQPSSRLYRM 304 (691)
Q Consensus 234 ~~~~LSGGerqRv~I------A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tii~~~H~p~~~i~~~ 304 (691)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.++++... .. | .+||++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 356799999999975 589999999999999999999999999999998654 33 3 48999999964 4579
Q ss_pred CCEEEEec
Q 005545 305 FDKVVVLS 312 (691)
Q Consensus 305 ~D~v~~L~ 312 (691)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 456
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.86 E-value=1.1e-08 Score=113.44 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=106.6
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l 192 (691)
.++++++ +.+.+|+.++|+|+||+|||||+++|++.. .+..|.|.+.|+. ..+|.|.+
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~~~~gvI~~iGer--------------------g~ev~e~~ 201 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNA-KADINVISLVGER--------------------GREVKDFI 201 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccC-CCCeEEEEeCCCC--------------------cccHHHHH
Confidence 3578885 999999999999999999999999999966 4557776665532 14566655
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHh-------hCCCEEEEeCCC
Q 005545 193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEML-------VNPSCLLLDEPT 265 (691)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~-------~~P~iLlLDEPt 265 (691)
.... ..-|+.+. ..+- ....-|.|+|+|+..+...+ .++-++++|+||
T Consensus 202 ~~~l---------------------~~~gl~~t--vvv~--~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 202 RKEL---------------------GEEGMRKS--VVVV--ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHh---------------------hhccccee--EEEE--ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchH
Confidence 4211 11111110 0110 11346999999999998877 689999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecC
Q 005545 266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR 321 (691)
Q Consensus 266 sgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~ 321 (691)
+..|+. .+|-..+.+....|.+..+.+|- ..+ ++|.-...+|.+...+.
T Consensus 257 r~a~A~--reisl~~~e~p~~G~~~~~~s~l--~~L---~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 257 RFADAR--RSVDIAVKELPIGGKTLLMESYM--KKL---LERSGKTQKGSITGIYT 305 (432)
T ss_pred HHHHHH--HHHHHHhcCCCCCCeeeeeeccc--hhH---HHHhccCCCcceEEEEE
Confidence 999996 55555666665458888888884 223 34444456788765553
No 457
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.83 E-value=2.6e-08 Score=102.47 Aligned_cols=161 Identities=18% Similarity=0.208 Sum_probs=95.8
Q ss_pred eece-EEEEeCCeEEEEEcCCCCcHHHHHHHHHc-CCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 005545 116 LNGV-SGMVKPGELLAMLGPSGSGKTTLLTALAG-RLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLS 193 (691)
Q Consensus 116 L~~v-s~~i~~Ge~~aliGpsGsGKSTLL~~L~G-~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~ 193 (691)
|+.+ .+=+++|.++.|.|++|||||||...++- ... . .+ .+.|+..+. +..+.+.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~-g~---------------~~~y~~~e~------~~~~~~~ 70 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-Q-GK---------------KVYVITTEN------TSKSYLK 70 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-C-CC---------------EEEEEEcCC------CHHHHHH
Confidence 4443 45689999999999999999999988752 121 1 12 234444321 2333222
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---C
Q 005545 194 YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV--NPSCLLLDEPTSG---L 268 (691)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~--~P~iLlLDEPtsg---L 268 (691)
-...+. ..-. +.+. .|.-...+..+. .....|.++++.+.....++. +|+++++||||+. +
T Consensus 71 ~~~~~g----~~~~-------~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~ 136 (234)
T PRK06067 71 QMESVK----IDIS-------DFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA 136 (234)
T ss_pred HHHHCC----CChh-------HHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC
Confidence 111111 1100 0000 011111111110 012247788999999999997 9999999999964 4
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCCch------HHHhcCCEEEEecC
Q 005545 269 DSTTAQRIVATLRGLARGGRTVITTIHQPSS------RLYRMFDKVVVLSE 313 (691)
Q Consensus 269 D~~~~~~i~~~L~~l~~~g~tii~~~H~p~~------~i~~~~D~v~~L~~ 313 (691)
|.....++++.++.++++|.|+++++|+... .+..++|-++.|+.
T Consensus 137 ~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 137 EEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 5555556666677777789999999998643 14567777777763
No 458
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.79 E-value=4e-09 Score=116.66 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=44.7
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce-EEEECCEeCC
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG-KITYNGRQFS 166 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G-~I~~~G~~~~ 166 (691)
+.+|++||+++++||+++|+|||||||||||+ +|+.. +.+| +|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-FSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-CCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 66554 4456 8999999875
No 459
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.79 E-value=6.8e-09 Score=129.55 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=66.6
Q ss_pred CCcccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545 234 LFRGISGGERKRVSIGQEML----VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
.+..||||||+|++||++++ .+|+++||||||+|||+.+...+.++|+.+++ +.++|++||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 34679999999999999984 57799999999999999999999999999976 4789999999753 57899998
Q ss_pred Eec
Q 005545 310 VLS 312 (691)
Q Consensus 310 ~L~ 312 (691)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.78 E-value=1.7e-08 Score=113.36 Aligned_cols=150 Identities=23% Similarity=0.297 Sum_probs=93.9
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 005545 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLS 193 (691)
Q Consensus 114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~ 193 (691)
.++++.+..+.+|++++++||||+||||++..|++++. ...|. +++++|.+|. ...++.|+|.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~-------------~kV~LI~~Dt---~RigA~EQLr 306 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-MRHGA-------------SKVALLTTDS---YRIGGHEQLR 306 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-HhcCC-------------CeEEEEeCCc---cchhHHHHHH
Confidence 35667777888999999999999999999999998652 11231 2578888876 3578999999
Q ss_pred HHHhhc-CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 005545 194 YAALLR-LPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERK-RVSIGQEMLVNP-----SCLLLDEPTS 266 (691)
Q Consensus 194 ~~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq-Rv~IA~aL~~~P-----~iLlLDEPts 266 (691)
+.+... .+.. ......+...+..+|.+.....+.. ...+++. .+.-..+++.++ .+|+||.++.
T Consensus 307 ~~AeilGVpv~----~~~~~~Dl~~aL~~L~d~d~VLIDT-----aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 307 IYGKILGVPVH----AVKDAADLRLALSELRNKHIVLIDT-----IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHhCCCee----ccCCchhHHHHHHhccCCCeEEeCC-----CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 766543 2211 1112233344556676655444432 2222222 234444555554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 005545 267 GLDSTTAQRIVATLRGLARGGRTVITTIH 295 (691)
Q Consensus 267 gLD~~~~~~i~~~L~~l~~~g~tii~~~H 295 (691)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 4455556666555555444454
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.76 E-value=2.5e-07 Score=84.56 Aligned_cols=118 Identities=31% Similarity=0.339 Sum_probs=76.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 005545 125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL 204 (691)
Q Consensus 125 ~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 204 (691)
+|..+.|.||+|+||||+++.|+..+.....+-+.++......... ....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVL-----------------DQLL------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCH-----------------HHHH-------------
Confidence 4678999999999999999999987642211344444432211000 0000
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------
Q 005545 205 TREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA------ 278 (691)
Q Consensus 205 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~------ 278 (691)
.... .. ......+++..+..++++--.+|+++++||+..-.+.........
T Consensus 51 -------------~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -------------LIIV---GG-------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -------------hhhh---hc-------cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 0000 00 012357788888888888877899999999999999998887765
Q ss_pred HHHHHHhCCcEEEEEeC
Q 005545 279 TLRGLARGGRTVITTIH 295 (691)
Q Consensus 279 ~L~~l~~~g~tii~~~H 295 (691)
........+..+|+++|
T Consensus 108 ~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 108 LLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 22223345788999988
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.76 E-value=4.7e-08 Score=100.94 Aligned_cols=136 Identities=23% Similarity=0.405 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECC-EeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 005545 126 GELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG-RQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL 204 (691)
Q Consensus 126 Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G-~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 204 (691)
|++..|+||+|+|||||.--++=-.. +|.=++.+ ... .....+-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va---~G~~~~g~~~~~--~~~~~Vlyi~~Ed------------------------ 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA---LGKNLFGGGLKV--TEPGRVVYLSAED------------------------ 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh---cCccccCCcccc--CCCceEEEEECCC------------------------
Confidence 67889999999999999987763221 22211111 110 1122344444221
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC--
Q 005545 205 TREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQ----------------EMLVNPSCLLLDEPTS-- 266 (691)
Q Consensus 205 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~----------------aL~~~P~iLlLDEPts-- 266 (691)
+..+..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 ~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 52 PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 22333445556666665543333222 2345555554443 335799999999 765
Q ss_pred ----CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCc
Q 005545 267 ----GLDSTTAQRIVATLRGLARG-GRTVITTIHQPS 298 (691)
Q Consensus 267 ----gLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~ 298 (691)
.+|+.....+++.|++++++ |.|||+++|...
T Consensus 124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999864 999999999864
No 463
>PRK02224 chromosome segregation protein; Provisional
Probab=98.69 E-value=3.3e-08 Score=120.41 Aligned_cols=77 Identities=31% Similarity=0.439 Sum_probs=66.6
Q ss_pred CcccCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEeCCCchHH
Q 005545 235 FRGISGGERK------RVSIGQEMLVN-----P-SCLLLDEPTSGLDSTTAQRIVATLRGLARGGR-TVITTIHQPSSRL 301 (691)
Q Consensus 235 ~~~LSGGerq------Rv~IA~aL~~~-----P-~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tii~~~H~p~~~i 301 (691)
+..||||||+ |++||++++.+ | +++++||||++||+.....+.++|+.+.+.|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4579999999 89999998864 3 67999999999999999999999999987664 8999999974 3
Q ss_pred HhcCCEEEEecC
Q 005545 302 YRMFDKVVVLSE 313 (691)
Q Consensus 302 ~~~~D~v~~L~~ 313 (691)
...+|+++.+.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 468999999964
No 464
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.68 E-value=1.7e-06 Score=89.63 Aligned_cols=166 Identities=22% Similarity=0.284 Sum_probs=121.4
Q ss_pred hhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 005545 501 ERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLG-AI 579 (691)
Q Consensus 501 eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~-a~ 579 (691)
++..+.|=..+-..+ ..+++++.+...-...+...+...++.+..|.. ....+..+..++.+..+...++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555543 566777777776666666666666666666632 333455555566666777778888666 36
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCcccccccccccee
Q 005545 580 IMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKY 657 (691)
Q Consensus 580 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~~~~ 657 (691)
..+.+.+..++.++..++..++|.+.+ .+|.|++|+.+++|..|+.+++-.....+. .
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~-~------------------- 253 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGW-R------------------- 253 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCC-c-------------------
Confidence 677888888898999999999999998 999999999999999999999866655432 0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545 658 LGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQP 690 (691)
Q Consensus 658 ~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~ 690 (691)
....|.++++++++.+++.+++...+|+.++
T Consensus 254 --~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 254 --NDGIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0126888999999999999999999988654
No 465
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.67 E-value=3.3e-08 Score=123.52 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=67.6
Q ss_pred CcccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545 235 FRGISGGERKRVSIGQEMLV----NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV 310 (691)
Q Consensus 235 ~~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~ 310 (691)
+..||||||++++||++++. .|++++||||++|||+.....+.++|+++++ +..+|++||++. ....||+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 45799999999999999985 6799999999999999999999999999876 478999999963 5689999988
Q ss_pred ecC
Q 005545 311 LSE 313 (691)
Q Consensus 311 L~~ 313 (691)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 764
No 466
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.58 E-value=2.1e-06 Score=82.55 Aligned_cols=130 Identities=10% Similarity=-0.007 Sum_probs=94.3
Q ss_pred HHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccH--HHHHHHHHHHHHHHHHHHHHHH
Q 005545 497 VFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSL--ITFLLTLSIILFNVLVAQSLGL 574 (691)
Q Consensus 497 ~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~--~~F~~f~~~~~l~~~~~~slg~ 574 (691)
..-+|+..+.|-+..-. +++.|+++|++...-..+++.++..++.+.+ |.+.+. ...+.++++..+..+....++.
T Consensus 13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~ 90 (152)
T TIGR01248 13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVM 90 (152)
T ss_pred HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888887777 6789999999999999999988877777544 887653 2233333333444445555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHH
Q 005545 575 LLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLV 629 (691)
Q Consensus 575 ~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~ 629 (691)
.++...++.+. .....+++++....+|.+.+ ++|+|++|+.+++|+.|+.+++=
T Consensus 91 ~~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 91 AMALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 66555565554 33456677777777887787 99999999999999999999863
No 467
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.58 E-value=4.3e-07 Score=98.88 Aligned_cols=124 Identities=23% Similarity=0.398 Sum_probs=76.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC
Q 005545 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK 202 (691)
Q Consensus 123 i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 202 (691)
.+++.++.|.||+||||||++++|.+.+..+..|.|.....++........+.+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~e---------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQRE---------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccc----------------------
Confidence 4578899999999999999999999865333356665433322110000000111100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005545 203 KLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282 (691)
Q Consensus 203 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~ 282 (691)
.|.. ..+ -.-+++++|-.+|+++++||+. |+.++...++
T Consensus 177 -----------------vg~~-------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---- 215 (343)
T TIGR01420 177 -----------------VGLD-------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT---- 215 (343)
T ss_pred -----------------cCCC-------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----
Confidence 0100 001 1123566888999999999997 8888765444
Q ss_pred HHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545 283 LARGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 283 l~~~g~tii~~~H~p~~~i~~~~D~v~~L 311 (691)
.+..|.+++.|+|-.+. ....+|++-|
T Consensus 216 aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 216 AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 35679999999999653 4556666544
No 468
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.57 E-value=2.5e-08 Score=102.02 Aligned_cols=164 Identities=20% Similarity=0.233 Sum_probs=83.9
Q ss_pred eece-EEEEeCCeEEEEEcCCCCcHHHHHHHHH--cCCCCCCceEEEECCEeCChh---ccccEEEEccCCCCCCCCCHH
Q 005545 116 LNGV-SGMVKPGELLAMLGPSGSGKTTLLTALA--GRLRGKFSGKITYNGRQFSSS---LKRKTGFVTQDDVLYPHLTVL 189 (691)
Q Consensus 116 L~~v-s~~i~~Ge~~aliGpsGsGKSTLL~~L~--G~~~~~~~G~I~~~G~~~~~~---~~~~igyv~Q~~~l~~~lTV~ 189 (691)
|+++ .+=+++|++++|.|++|+|||||...++ +.. +-.+.+++......+. ..+..|+.+|+....+.+.+.
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~ 86 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVII 86 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEE
Confidence 5553 4568999999999999999999988655 322 2245566665332221 122455555543222222222
Q ss_pred HHHHHHH--hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545 190 ETLSYAA--LLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG 267 (691)
Q Consensus 190 E~l~~~~--~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg 267 (691)
|.+.... ... ....+.++..++++++++..++.. .+.++-.+..+++|||+
T Consensus 87 d~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~------------------------~~vvIDsl~~l~~~~~~-- 139 (229)
T TIGR03881 87 DALMKEKEDEWS-LRELSIEELLNKVIEAKKYLGYGH------------------------ARLVIDSMSAFWLDKPA-- 139 (229)
T ss_pred Eccccccccccc-cccCCHHHHHHHHHHHHHhhccCc------------------------eEEEecCchhhhccChH--
Confidence 2110000 000 012233333444444444433210 11222233444445553
Q ss_pred CCHHHHHHHHHHHHH-HHhCCcEEEEEeCCCch-------HHHhcCCEEEEec
Q 005545 268 LDSTTAQRIVATLRG-LARGGRTVITTIHQPSS-------RLYRMFDKVVVLS 312 (691)
Q Consensus 268 LD~~~~~~i~~~L~~-l~~~g~tii~~~H~p~~-------~i~~~~D~v~~L~ 312 (691)
...++...|++ +++.|.|+|+++|.... .+..++|.|+.|+
T Consensus 140 ----~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 140 ----MARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred ----HHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 33444444554 45569999999996431 2456788888887
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.56 E-value=3.3e-09 Score=120.49 Aligned_cols=165 Identities=20% Similarity=0.187 Sum_probs=99.8
Q ss_pred eece-EEEEeCCeEEEEEcCCCCcHHHHHHHH--HcCCCCCCceEEEECCEeCChhc---cccEEEEccCCCCCCCCCHH
Q 005545 116 LNGV-SGMVKPGELLAMLGPSGSGKTTLLTAL--AGRLRGKFSGKITYNGRQFSSSL---KRKTGFVTQDDVLYPHLTVL 189 (691)
Q Consensus 116 L~~v-s~~i~~Ge~~aliGpsGsGKSTLL~~L--~G~~~~~~~G~I~~~G~~~~~~~---~~~igyv~Q~~~l~~~lTV~ 189 (691)
|+.+ .+=+.+|..+.|.|++|||||||..-. .|... .-+.-+++...+-...+ .+..|+-.++..--.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g----- 83 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG----- 83 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC-----
Confidence 5554 567899999999999999999998765 34322 12345555544332222 123454443211000
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHH--HHHhhCCCEEEEeCCCCC
Q 005545 190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIG--QEMLVNPSCLLLDEPTSG 267 (691)
Q Consensus 190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA--~aL~~~P~iLlLDEPtsg 267 (691)
++.+ .... ... ....+++.+++.+..+... +.+|+|++|||.|+ .+|...|+..
T Consensus 84 -~l~~---~~~~---~~~----~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~-------- 139 (484)
T TIGR02655 84 -KLFI---LDAS---PDP----EGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV-------- 139 (484)
T ss_pred -ceEE---EecC---chh----ccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch--------
Confidence 0000 0000 000 0111233444444444333 35899999999999 6666665543
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchH--------HHhcCCEEEEec
Q 005545 268 LDSTTAQRIVATLRGLARGGRTVITTIHQPSSR--------LYRMFDKVVVLS 312 (691)
Q Consensus 268 LD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~--------i~~~~D~v~~L~ 312 (691)
...+..+.++++.+++.|+|+|+++|++... ...++|.|+.|+
T Consensus 140 --~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 --SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred --HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5677889999999988899999999986421 145889999987
No 470
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.56 E-value=3.9e-07 Score=110.20 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=55.1
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh--cCCEEEEecCCeEE
Q 005545 248 IGQEMLVNPSCLLLDEPTSGL-DSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR--MFDKVVVLSEGSPI 317 (691)
Q Consensus 248 IA~aL~~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~--~~D~v~~L~~G~iv 317 (691)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.. +.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 677888999999999999999 7999999999999999889999999999764 433 33434344444444
No 471
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.54 E-value=8.4e-07 Score=99.15 Aligned_cols=174 Identities=23% Similarity=0.278 Sum_probs=107.5
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh------------hccccEEEEccCC
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS------------SLKRKTGFVTQDD 180 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~------------~~~~~igyv~Q~~ 180 (691)
..+++++ +.+.+||.++|+|+||+|||||+++|+|.. .+..|.+...|..-.+ .+++.+-++.+-+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-EADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 5689999 999999999999999999999999999976 3556766665543321 0122223333222
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC-HHHHHHHHHHHHHhhCCCEE
Q 005545 181 VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS-GGERKRVSIGQEMLVNPSCL 259 (691)
Q Consensus 181 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS-GGerqRv~IA~aL~~~P~iL 259 (691)
. ++.+- + + .....-.+.+.+...|- |..+ ....++ --|-+| .|+ +
T Consensus 229 ~-----~p~~r--~----~------~~~~a~t~AE~frd~G~----~Vll---~~DslTr~A~A~R-Eis---------l 274 (440)
T TIGR01026 229 Q-----SPLLR--L----K------GAYVATAIAEYFRDQGK----DVLL---LMDSVTRFAMAQR-EIG---------L 274 (440)
T ss_pred C-----CHHHH--H----H------HHHHHHHHHHHHHHCCC----CEEE---EEeChHHHHHHHH-HHH---------H
Confidence 1 11111 0 0 00111112222323342 1111 001121 112222 111 3
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHhCCc-------EEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545 260 LLDEP--TSGLDSTTAQRIVATLRGLARGGR-------TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325 (691)
Q Consensus 260 lLDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 325 (691)
.+.|| +.|+|+.....+.+++.+....+. ||++.+||..+ .++|++..+.+|+++.+....+.
T Consensus 275 ~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred hcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 45686 459999999999999999887667 88888999643 57899999999999999877655
No 472
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.52 E-value=1.1e-07 Score=105.51 Aligned_cols=170 Identities=22% Similarity=0.254 Sum_probs=105.8
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc---eEEEECCEeCCh----------hccccEEEEccC
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS---GKITYNGRQFSS----------SLKRKTGFVTQD 179 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~---G~I~~~G~~~~~----------~~~~~igyv~Q~ 179 (691)
..+|+++ +.+.+||.++|+|+||+|||||+++|+|... ++. |.|-.+|.++.. ..|..+++++|+
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~-~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ-ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC-CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 5699999 9999999999999999999999999999764 333 445555544432 124478999999
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHH-HHHHHHHhhCCCE
Q 005545 180 DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKR-VSIGQEMLVNPSC 258 (691)
Q Consensus 180 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR-v~IA~aL~~~P~i 258 (691)
...+..+++.|++.+.+.+..... +.|--+++ .+.+.+ +-+| ++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g-------~~Vll~~D--sltr~a---------------~A~REis----------- 265 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKG-------HDVLLLVD--SLTRYA---------------MAQREIA----------- 265 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhcc-------CCEEEeec--chhHHH---------------hhhhHHH-----------
Confidence 999999999999887665321110 00000000 001000 1111 11
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHh---CC-cEEEEEeCCCchHHH-hcCCEEEEecCCeEEEe
Q 005545 259 LLLDEP--TSGLDSTTAQRIVATLRGLAR---GG-RTVITTIHQPSSRLY-RMFDKVVVLSEGSPIYS 319 (691)
Q Consensus 259 LlLDEP--tsgLD~~~~~~i~~~L~~l~~---~g-~tii~~~H~p~~~i~-~~~D~v~~L~~G~iv~~ 319 (691)
+.+.|| +.|-.+..-..+-+++.+..+ .| .|.+.+..-+.+++. -++|.+.-+-+|+++..
T Consensus 266 l~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 266 LSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred HhcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 123454 236777777777777777532 23 466666544433221 26777777888998874
No 473
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=2.2e-07 Score=101.91 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=54.7
Q ss_pred ccCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545 237 GISGGERKRVSIGQEMLV---------NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS 298 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~~---------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~ 298 (691)
.+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|++. |..+++|+|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 489999999999999999 99999999999999999999999999764 679999999864
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.47 E-value=3.7e-07 Score=90.70 Aligned_cols=81 Identities=23% Similarity=0.110 Sum_probs=58.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCC-hhccccEEEEccCC--CCCCCCCHHHH
Q 005545 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS-SSLKRKTGFVTQDD--VLYPHLTVLET 191 (691)
Q Consensus 115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~-~~~~~~igyv~Q~~--~l~~~lTV~E~ 191 (691)
..+=+.+.+++|+.++|+||||||||||+++|+|.++ +..|.|.+++..-. ...+..++++.|.+ ...+..|+.+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence 3445566789999999999999999999999999874 67899999874321 12234566666544 34566788887
Q ss_pred HHHHH
Q 005545 192 LSYAA 196 (691)
Q Consensus 192 l~~~~ 196 (691)
+..+.
T Consensus 93 l~~~l 97 (186)
T cd01130 93 LRSAL 97 (186)
T ss_pred HHHHh
Confidence 76554
No 475
>PRK14079 recF recombination protein F; Provisional
Probab=98.40 E-value=5.7e-07 Score=98.15 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=62.6
Q ss_pred ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545 237 GISGGERKRVSIGQEML---------VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 237 ~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.... .++|.+++.| ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCce
Confidence 37999999999999998 8999999999999999999999998886542 3555555543 57899
Q ss_pred EEEecCCeEEEe
Q 005545 308 VVVLSEGSPIYS 319 (691)
Q Consensus 308 v~~L~~G~iv~~ 319 (691)
++.+.+|++.-.
T Consensus 335 ~~~~~~~~~~~~ 346 (349)
T PRK14079 335 TLRIEAGVFTPE 346 (349)
T ss_pred EEEEeccEecCC
Confidence 999999886533
No 476
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.37 E-value=1e-06 Score=110.33 Aligned_cols=162 Identities=15% Similarity=0.232 Sum_probs=90.6
Q ss_pred eEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh
Q 005545 119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL 198 (691)
Q Consensus 119 vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~ 198 (691)
+++..+++++++|+|++|+|||||++++.+++....+|.+++++..+.... .. +-.++... .+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~-~~--~~~~~~~~-------~~~~~---- 265 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM-EI--YSSANPDD-------YNMKL---- 265 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch-hh--cccccccc-------cchhH----
Confidence 456778899999999999999999999988765556899998763221100 00 00000000 00000
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 005545 199 RLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278 (691)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~ 278 (691)
....+.+.++++..++. +. . .++.|+| |..++-+|+||+- |.. ..++
T Consensus 266 --------~l~~~~l~~il~~~~~~------~~-----~-~~~~~~~------L~~krvLLVLDdv----~~~---~~l~ 312 (1153)
T PLN03210 266 --------HLQRAFLSEILDKKDIK------IY-----H-LGAMEER------LKHRKVLIFIDDL----DDQ---DVLD 312 (1153)
T ss_pred --------HHHHHHHHHHhCCCCcc------cC-----C-HHHHHHH------HhCCeEEEEEeCC----CCH---HHHH
Confidence 00112233444433331 11 1 2566666 3355667889984 333 3344
Q ss_pred HHHHHH---hCCcEEEEEeCCCchHHHhc-CCEEEEecCCeEEEecCHhHHHHHhhhcCC
Q 005545 279 TLRGLA---RGGRTVITTIHQPSSRLYRM-FDKVVVLSEGSPIYSGRAAQVMDYFGSIGY 334 (691)
Q Consensus 279 ~L~~l~---~~g~tii~~~H~p~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 334 (691)
.|+... ..|.+||+|||+.. .+... +|+++.+.. -+.+++.+.|...-|
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~-vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKH-FLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHH-HHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 444433 34889999999953 23222 577665531 134667777766544
No 477
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.36 E-value=8.9e-07 Score=98.45 Aligned_cols=83 Identities=25% Similarity=0.323 Sum_probs=63.1
Q ss_pred ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G 156 (691)
|..++.++++..+.. ...+++.++ .+.+||.++|+||||+|||||+++|+++. .++.|
T Consensus 137 p~~~~r~~v~~~l~T--------------------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~pd~g 194 (450)
T PRK06002 137 PPAMTRARVETGLRT--------------------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-AFDTV 194 (450)
T ss_pred CCCeEeecceEEcCC--------------------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCee
Confidence 445666677666652 245888886 89999999999999999999999999966 46689
Q ss_pred EEEECC---EeCCh--------hccccEEEEccCCC
Q 005545 157 KITYNG---RQFSS--------SLKRKTGFVTQDDV 181 (691)
Q Consensus 157 ~I~~~G---~~~~~--------~~~~~igyv~Q~~~ 181 (691)
.|.+.| +++.. ..++.+++|+|.+.
T Consensus 195 vv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 195 VIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred eeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 988864 55431 12357999999764
No 478
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.35 E-value=1.2e-06 Score=107.07 Aligned_cols=78 Identities=27% Similarity=0.375 Sum_probs=69.5
Q ss_pred CCcccCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545 234 LFRGISGGERKRVSIGQEML------VN--PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF 305 (691)
Q Consensus 234 ~~~~LSGGerqRv~IA~aL~------~~--P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~ 305 (691)
.+..|||||+=.++||.+|+ .+ -++|+|||||..||+.+...++++|..+...+++|++|||++ ++...+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 45779999999998888775 35 589999999999999999999999999998899999999994 567899
Q ss_pred CEEEEecC
Q 005545 306 DKVVVLSE 313 (691)
Q Consensus 306 D~v~~L~~ 313 (691)
|.++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998875
No 479
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.34 E-value=4.6e-07 Score=90.66 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=65.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCCH
Q 005545 128 LLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAA-LLRLPKKLTR 206 (691)
Q Consensus 128 ~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~ 206 (691)
+++|.||||||||||.+.|++.+. .|. +.++.+|+.. ..++..+...... ....|...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~---~~~---------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~-- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---NPK---------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAF-- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---CCC---------------eEEEEecccc-cccccccHHHhccCCCCCCCcc--
Confidence 579999999999999999999652 222 3344444332 2233333222111 11112111
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545 207 EEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDS 270 (691)
Q Consensus 207 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~ 270 (691)
..+...+.+..+...+..+.++ ...|.|++++..+ .+.+++++++|+|..+.++
T Consensus 60 --~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 --DFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred --cHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1223445566665443333322 2467777776555 5678999999999999886
No 480
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.32 E-value=1e-06 Score=106.41 Aligned_cols=137 Identities=23% Similarity=0.239 Sum_probs=84.7
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 005545 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLS 193 (691)
Q Consensus 114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~ 193 (691)
.+=+|+++. ..+.++.|.|||++||||+||.++-..--..-| .|||=+.. .+.+.+.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G-----------------~~VPa~~a---~i~~~d~I- 653 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG-----------------SFVPAESA---RIGIVDRI- 653 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC-----------------Cceeccce---EecccCee-
Confidence 466788887 677899999999999999999987421000011 13332211 01111111
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHh--hCCCEEEEeCC---CCCC
Q 005545 194 YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEML--VNPSCLLLDEP---TSGL 268 (691)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~--~~P~iLlLDEP---tsgL 268 (691)
..++|-. |. ..+|.|-=+.....++..|- ++++++|+||| |+.+
T Consensus 654 -----------------------~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~ 702 (854)
T PRK05399 654 -----------------------FTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTY 702 (854)
T ss_pred -----------------------eeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcc
Confidence 1111111 11 12356766666666666654 48999999999 8888
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545 269 DSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 269 D~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~ 307 (691)
|... ....+++.+.+. |.++|++||.. ++.+++++
T Consensus 703 dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 703 DGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred hhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 8443 455677777765 58999999993 56777775
No 481
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.32 E-value=1.6e-05 Score=95.95 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=44.1
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545 251 EMLVNPSCLLLDEPTSGLD-STTAQRIVATLRGLARGGRTVITTIHQPSS 299 (691)
Q Consensus 251 aL~~~P~iLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~~~H~p~~ 299 (691)
.+..+|.++++|||...|| +..+..+.+.++.+++.|.+++++||++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 889999999999999889999999999754
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.26 E-value=6e-07 Score=88.56 Aligned_cols=65 Identities=26% Similarity=0.422 Sum_probs=45.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChh--cc-ccEEEEccCCCCCCCCCHHHHHHH
Q 005545 125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS--LK-RKTGFVTQDDVLYPHLTVLETLSY 194 (691)
Q Consensus 125 ~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~--~~-~~igyv~Q~~~l~~~lTV~E~l~~ 194 (691)
+||+++|+|+||||||||+++|+|++. + +.++|.++... .+ ...|+.+|+...++..++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-A----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-C----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 699999999999999999999999763 2 57888776431 22 235666666544445555555443
No 483
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.21 E-value=1.9e-06 Score=108.86 Aligned_cols=59 Identities=29% Similarity=0.432 Sum_probs=52.7
Q ss_pred CcccCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005545 235 FRGISGGERKRVS----IGQE--------MLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ 296 (691)
Q Consensus 235 ~~~LSGGerqRv~----IA~a--------L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~ 296 (691)
..+||||||||++ +|++ +..+|++++||||++|||+.+...++++++++ |.++|+++|.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 4679999999996 5644 55899999999999999999999999999998 6889999987
No 484
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.14 E-value=4.5e-05 Score=79.97 Aligned_cols=37 Identities=35% Similarity=0.498 Sum_probs=32.9
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGR 149 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~ 149 (691)
...|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468998889999999999999999999999988753
No 485
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.13 E-value=5.9e-06 Score=92.07 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=70.8
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECC---EeCCh----hcc---ccEEEE-----c
Q 005545 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFSS----SLK---RKTGFV-----T 177 (691)
Q Consensus 113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G---~~~~~----~~~---~~igyv-----~ 177 (691)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+....|.|.+.| +++.+ .++ .+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 4689998 999999999999999999999999999966333347777745 44421 111 234555 8
Q ss_pred cCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005545 178 QDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223 (691)
Q Consensus 178 Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 223 (691)
|++. +.+.+ +...+.-..+.+-...+...+...++.+++++++|.
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 8764 44433 444443222222111123355667888899999884
No 486
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.13 E-value=7.4e-05 Score=90.45 Aligned_cols=47 Identities=26% Similarity=0.247 Sum_probs=42.6
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545 252 MLVNPSCLLLDEPTSGLD-STTAQRIVATLRGLARGGRTVITTIHQPS 298 (691)
Q Consensus 252 L~~~P~iLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~~~H~p~ 298 (691)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999988999999999975
No 487
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=0.0013 Score=68.94 Aligned_cols=232 Identities=15% Similarity=0.208 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHh-hcchhH-HHHH----HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 005545 425 WWEQFKVLLKRGLQER-KHESYS-YLRI----FQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFP--LNNAIF 496 (691)
Q Consensus 425 ~~~Q~~~L~~R~~~~~-r~~~~~-~~r~----~~~i~~all~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~--~~~~i~ 496 (691)
.++....|.+|+++.+ |+..+- .--+ ++.++++++.|.++-.- .-+....++.-...|.|++ ...+..
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~----~~~~~~~l~~G~~~w~f~~~~i~~~~~ 91 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP----GLNFLAYLLAGLILWFFFSEAISEGAG 91 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC----CcchHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4566778889999874 554431 1233 34444445555444332 2222222222223333322 223344
Q ss_pred HHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545 497 VFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLL 576 (691)
Q Consensus 497 ~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i 576 (691)
.+.+...++.|-+ .++..+.+++++.++-...+..++....+-|..+.. ...++.....+.+..+.+.++|+++
T Consensus 92 s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~ 165 (263)
T COG1682 92 SVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLIL 165 (263)
T ss_pred HhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666655432 378899999999998777777766665555554444 3344444455566667777788887
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCcccccccccc
Q 005545 577 GAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPA 654 (691)
Q Consensus 577 ~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~ 654 (691)
|.++.-..--..+-+.++-+++..+|.+=+ ++|+-++|+.++||+.+-.|.+=..-+++. . +
T Consensus 166 a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~-~--------------~- 229 (263)
T COG1682 166 ASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGD-V--------------P- 229 (263)
T ss_pred HhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCC-c--------------c-
Confidence 777543332233444555555556665443 999999999999999999998755555432 1 0
Q ss_pred ceecCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545 655 IKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQP 690 (691)
Q Consensus 655 ~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~ 690 (691)
.+.+.+..++..++..+++++..++.||
T Consensus 230 --------~~~~~~~~~~~~li~l~vg~~~~~~~~~ 257 (263)
T COG1682 230 --------DLHLLVYILLLTLILLFVGLLLFRKFRK 257 (263)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233344445555566666666666554
No 488
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.09 E-value=9.3e-06 Score=91.56 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=43.8
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCcEEEEEeCCCch-------HHHhcCCEEEEecCCe
Q 005545 254 VNPSCLLLDEPTSGL----D-----STTAQRIVATLRGLAR-GGRTVITTIHQPSS-------RLYRMFDKVVVLSEGS 315 (691)
Q Consensus 254 ~~P~iLlLDEPtsgL----D-----~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~-------~i~~~~D~v~~L~~G~ 315 (691)
.+|+++++|.-++=. + .....+++..|.++++ .|.|+++++|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999876521 1 2234556667777765 59999999997432 1567899999998654
No 489
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.08 E-value=1.6e-05 Score=73.39 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEeCCCc
Q 005545 243 RKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-----GGRTVITTIHQPS 298 (691)
Q Consensus 243 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~~~H~p~ 298 (691)
++..........++.++++||.-.. ++.....+.+.+..+.. .+..+|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3344445566778999999998775 66677788888888753 4678899988643
No 490
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.07 E-value=0.0019 Score=67.39 Aligned_cols=165 Identities=18% Similarity=0.264 Sum_probs=95.3
Q ss_pred hHHHHHHhhCCC--------CChHHHHHHHHHHHHHHHHH--HHHHHh--h-hhhcc-cCccccHHHHHHHHHHHHHHHH
Q 005545 502 RAMLIKERSSGM--------YRLSSYYFARMVGDLPMELV--LPTIFI--T-VAYWM-GGLKPSLITFLLTLSIILFNVL 567 (691)
Q Consensus 502 R~v~~rE~~~g~--------Y~~~ay~la~~l~~lP~~~~--~~~if~--~-i~Y~m-~Gl~~~~~~F~~f~~~~~l~~~ 567 (691)
-..+-+|+++|. ++...++++|.++-+...++ ...... + ..++. .|.+.+...++...+...+..+
T Consensus 87 ~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (277)
T PF12679_consen 87 SDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLL 166 (277)
T ss_pred HHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 445666766663 57789999999999877432 111111 1 12222 3445555555544444333333
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhh-----hhhhhCHHHHHHHHHHHHHhCCCc
Q 005545 568 ---VAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIA-----WLKYISFSHYCYKLLVGVQYSANE 637 (691)
Q Consensus 568 ---~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~-----Wl~yiSp~~Y~~~~l~~nef~~~~ 637 (691)
+..+++.++|+++++...|..++..+............. .-..+.. .+.+++|..+ ++.+......+.
T Consensus 167 ~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~- 244 (277)
T PF12679_consen 167 AVLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGG- 244 (277)
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhccc-
Confidence 458999999999999998888777655555433333221 1112222 3356666542 222222222211
Q ss_pred eeccCCCccccccccccceecCCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005545 638 VYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMR 688 (691)
Q Consensus 638 ~~~C~~~~~c~~~~~~~~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~ 688 (691)
.. . ...|.++++++++.+++.+++|...++.
T Consensus 245 -~~---------------~----~~~~~~~~~~~~~~~v~l~la~~~F~rr 275 (277)
T PF12679_consen 245 -FV---------------W----LSTWPSLLILLAYTLVFLALAYYRFQRR 275 (277)
T ss_pred -cc---------------h----hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 0 3568889999999999999999766553
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.05 E-value=5.1e-06 Score=67.36 Aligned_cols=36 Identities=39% Similarity=0.655 Sum_probs=29.5
Q ss_pred eeceEEEEeC-CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 005545 116 LNGVSGMVKP-GELLAMLGPSGSGKTTLLTALAGRLR 151 (691)
Q Consensus 116 L~~vs~~i~~-Ge~~aliGpsGsGKSTLL~~L~G~~~ 151 (691)
+++.++.+.+ |+++.|.|+|||||||||+++.=.+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556677775 57999999999999999999986554
No 492
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.05 E-value=5.6e-06 Score=85.00 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=49.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE----EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh
Q 005545 124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK----ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL 198 (691)
Q Consensus 124 ~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~----I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~ 198 (691)
.+..+++|.||||||||||.+.|++++. +.+|. |.+++.......++..|++.+.+ ..+.+++.+.+.+...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~-~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ-QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh-hccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999874 45777 55555433333344567776543 33456776665554433
No 493
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.02 E-value=0.0042 Score=64.39 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=93.9
Q ss_pred HHHHHHhhCCCC--------ChHHHHHHHHHHHHHHHHHHHH---HHhhhhhcccC--ccccHHHHHHHHHHHHHHHHHH
Q 005545 503 AMLIKERSSGMY--------RLSSYYFARMVGDLPMELVLPT---IFITVAYWMGG--LKPSLITFLLTLSIILFNVLVA 569 (691)
Q Consensus 503 ~v~~rE~~~g~Y--------~~~ay~la~~l~~lP~~~~~~~---if~~i~Y~m~G--l~~~~~~F~~f~~~~~l~~~~~ 569 (691)
..+.+||++|.. +...++++|.++-+-+..+..+ ++....++... -..+...++..++..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 455666666654 4578999999988755443222 12222222211 1234556655555566677788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcc-ccCC--cchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCcc
Q 005545 570 QSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYY-IQHM--SPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLH 646 (691)
Q Consensus 570 ~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~-i~~i--p~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~ 646 (691)
.++|.++|+++.+...|..++..+... ++.|+. +.++ |++.+|+.|+||..|-.+.. ++ .+
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~~~-----~g--~i------- 214 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDGLASLLWGGSAYTISELGLSYHYESIS-----RG--VI------- 214 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHHHhhhcchhHHHHHHHcCHHHHHHHHH-----cC--cc-------
Confidence 899999999999998887655433222 223321 3344 88899999999976643322 11 11
Q ss_pred ccccccccceecCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 005545 647 CSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRM 687 (691)
Q Consensus 647 c~~~~~~~~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~ 687 (691)
.+.|+.+.+.+.+.+..++...+++
T Consensus 215 ----------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 ----------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred ----------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1466777777777777777766643
No 494
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.01 E-value=5.1e-06 Score=82.53 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCch-HHHhcCCEEEEecCC
Q 005545 240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS-RLYRMFDKVVVLSEG 314 (691)
Q Consensus 240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~-~i~~~~D~v~~L~~G 314 (691)
.|+-+|..||..+..+|+.+..+| +.+||.....+.+.++++.++|.+||+.+|.... .+...||.+++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 478899999999999999988777 8999999999999999887667899999998632 256789999888654
No 495
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.01 E-value=2.5e-06 Score=86.17 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 005545 124 KPGELLAMLGPSGSGKTTLLTALAGRL 150 (691)
Q Consensus 124 ~~Ge~~aliGpsGsGKSTLL~~L~G~~ 150 (691)
++|++++|+||||||||||++.|++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999999976
No 496
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.99 E-value=6.8e-06 Score=81.56 Aligned_cols=37 Identities=41% Similarity=0.682 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCC
Q 005545 126 GELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166 (691)
Q Consensus 126 Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~ 166 (691)
|++++|+||||||||||+++|++... + .+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-T---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-C---eEEEcCEECC
Confidence 78999999999999999999999652 2 5777776654
No 497
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.98 E-value=1.6e-05 Score=69.69 Aligned_cols=47 Identities=32% Similarity=0.461 Sum_probs=36.8
Q ss_pred cccCHHHH-HHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005545 236 RGISGGER-KRVSIGQEML------V------NPSCLLLDEPTSGLDSTTAQRIVATLRG 282 (691)
Q Consensus 236 ~~LSGGer-qRv~IA~aL~------~------~P~iLlLDEPtsgLD~~~~~~i~~~L~~ 282 (691)
.++||||| ..+.++.+++ . .|.+++||||+++||+.....++++|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 46999999 5555544432 2 3689999999999999999999999875
No 498
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.97 E-value=4.7e-06 Score=83.57 Aligned_cols=56 Identities=30% Similarity=0.367 Sum_probs=42.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccC
Q 005545 124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQD 179 (691)
Q Consensus 124 ~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~ 179 (691)
.+|++++|+|+||||||||.+.|++++...-.|.+.++|.++...+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 68999999999999999999999997643335789999977654333345555554
No 499
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.96 E-value=8.2e-05 Score=73.54 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=35.7
Q ss_pred ccCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005545 237 GISGGERKRVS--IGQEMLV-NPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286 (691)
Q Consensus 237 ~LSGGerqRv~--IA~aL~~-~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~ 286 (691)
.+|+||+|++. +++.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 147 KLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 47999999987 5544433 3444 399999999999999999988764
No 500
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.94 E-value=1.8e-05 Score=86.64 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=45.3
Q ss_pred EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceee-----------ceEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLN-----------GVSGMVKPGELLAMLGPSGSGKTTLLTALA 147 (691)
Q Consensus 79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~ 147 (691)
.+.|+||++.|+.. +.+|+ |+++.|.+|+.++|+||+|+|||||++.|+
T Consensus 130 ri~Fe~LTf~YP~e--------------------r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~ 189 (415)
T TIGR00767 130 RVLFENLTPLYPNE--------------------RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIA 189 (415)
T ss_pred CeEEEEeeecCCCc--------------------cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHH
Confidence 58999999999732 23454 999999999999999999999999999999
Q ss_pred cCC
Q 005545 148 GRL 150 (691)
Q Consensus 148 G~~ 150 (691)
..+
T Consensus 190 ~~I 192 (415)
T TIGR00767 190 QAI 192 (415)
T ss_pred Hhh
Confidence 855
Done!