Query 005545
Match_columns 691
No_of_seqs 296 out of 3332
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 18:34:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005545.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2051-2054//hhsearch_pdb/005545hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 1.0 1 1 371.8 30.3 224 77-327 22-253 (366)
2 3rlf_A Maltose/maltodextrin im 1.0 1 1 369.9 31.0 218 79-327 3-223 (381)
3 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 367.5 28.9 218 79-327 4-228 (359)
4 4f4c_A Multidrug resistance pr 1.0 1 1 365.3 21.8 220 77-327 413-641 (1321)
5 1z47_A CYSA, putative ABC-tran 1.0 1 1 361.5 30.5 221 77-327 12-235 (355)
6 4f4c_A Multidrug resistance pr 1.0 1 1 361.5 21.9 220 78-328 1075-1305(1321)
7 2yyz_A Sugar ABC transporter, 1.0 1 1 361.0 28.9 218 79-327 3-223 (359)
8 2it1_A 362AA long hypothetical 1.0 1 1 360.7 30.0 218 79-327 3-223 (362)
9 1v43_A Sugar-binding transport 1.0 1 1 360.3 27.4 218 79-327 11-231 (372)
10 1g29_1 MALK, maltose transport 1.0 1 1 360.1 31.6 218 79-327 3-229 (372)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=371.78 Aligned_cols=224 Identities=27% Similarity=0.427 Sum_probs=198.4
Q ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 51799994999981478878655567899876555641255127999388199998699985899999998298999720
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G 156 (691)
...|+++||+++|.... +...+|+|||+++++||+++|+||||||||||+++|+|.. .|++|
T Consensus 22 ~~mi~v~~ls~~y~~~~-----------------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~-~p~~G 83 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT-----------------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEG 83 (366)
T ss_dssp -CCEEEEEEEEEEECSS-----------------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEE
T ss_pred CCEEEEEEEEEEECCCC-----------------CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCE
T ss_conf 86599984899938988-----------------7737887469998489899999589955999999996699-99962
Q ss_pred EEEECCEECCH-------HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999972791-------01254899915897899999999999977614998899999999999999990997423553
Q 005545 157 KITYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229 (691)
Q Consensus 157 ~I~~~G~~~~~-------~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 229 (691)
+|.++|+++.. ..++.+|||+|++.+++.+||+||+.++...+ ..++.+.+++++++++.+||.+..+++
T Consensus 84 ~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~ 160 (366)
T 3tui_C 84 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY 160 (366)
T ss_dssp EEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCC
T ss_pred EEEECCEECCCCCHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 99999999875898799987386899927875688889999999999865---998789999999999976993476199
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHCCCEE
Q ss_conf 24887765598999999999998319987999199999999999999999999873-99689999479866898507879
Q 005545 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKV 308 (691)
Q Consensus 230 vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v 308 (691)
+. .|||||||||+|||||+.+|++|+|||||+|||+.++.+++++|+++++ .|.|+|+++|++ ..+..+||++
T Consensus 161 ~~-----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv 234 (366)
T 3tui_C 161 PS-----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCV 234 (366)
T ss_dssp TT-----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEE
T ss_pred HH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEE
T ss_conf 45-----58999999999999996699999997987568999999999999999973799999995689-9999969999
Q ss_pred EEECCCEEEEECCHHHHHH
Q ss_conf 9960985777449757998
Q 005545 309 VVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 309 ~vL~~G~iv~~G~~~~~~~ 327 (691)
++|++|++++.|++++++.
T Consensus 235 ~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 235 AVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp EEEETTEEEECCBHHHHHS
T ss_pred EEEECCEEEEECCHHHHHH
T ss_conf 9998998999758999971
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=369.93 Aligned_cols=218 Identities=30% Similarity=0.491 Sum_probs=197.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|.. .+++|+|
T Consensus 3 ~l~~~~l~~~yg---------------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I 60 (381)
T 3rlf_A 3 SVQLQNVTKAWG---------------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDL 60 (381)
T ss_dssp CEEEEEEEEEET---------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEE
T ss_pred EEEEEEEEEEEC---------------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEE
T ss_conf 899984899989---------------------999996568998799899999689955999999997699-8897199
Q ss_pred EECCEECCH--HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 999972791--012548999158978999999999999776149988999999999999999909974235532488776
Q 005545 159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 159 ~~~G~~~~~--~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~r 236 (691)
.++|+++.. ..++.++||+|++.++|++||+||+.|+...+ ..++++.+++++++++.++|.+..++++.
T Consensus 61 ~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~----- 132 (381)
T 3rlf_A 61 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK----- 132 (381)
T ss_dssp EETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----
T ss_pred EECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHCCCHH-----
T ss_conf 9999999879977888899906875789999999999999775---99989999999999988599416539925-----
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEECCCE
Q ss_conf 55989999999999983199879991999999999999999999998739-96899994798668985078799960985
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 gLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~vL~~G~ 315 (691)
.|||||||||+|||+|+.+|++|+|||||++||+..+.++.+.|+++.++ |.|+|+++|++ .++..++|++++|++|+
T Consensus 133 ~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~ 211 (381)
T 3rlf_A 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGR 211 (381)
T ss_dssp GSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCE
T ss_conf 79999999999999998199999998987679999999999999999986798899998899-99998699999998998
Q ss_pred EEEECCHHHHHH
Q ss_conf 777449757998
Q 005545 316 PIYSGRAAQVMD 327 (691)
Q Consensus 316 iv~~G~~~~~~~ 327 (691)
++..|+++++..
T Consensus 212 i~~~g~~~~l~~ 223 (381)
T 3rlf_A 212 VAQVGKPLELYH 223 (381)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEECHHHHHH
T ss_conf 999838999971
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=367.52 Aligned_cols=218 Identities=27% Similarity=0.478 Sum_probs=193.8
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|.. .+++|+|
T Consensus 4 ~l~i~~ls~~y~---------------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I 61 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---------------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE-QPDSGEI 61 (359)
T ss_dssp CEEEEEEEEEET---------------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEE
T ss_pred EEEEEEEEEEEC---------------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCEE
T ss_conf 899996999989---------------------988897538999599899999999805999999996699-8997389
Q ss_pred EECCEEC----CH--HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9999727----91--01254899915897899999999999977614998899999999999999990997423553248
Q 005545 159 TYNGRQF----SS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232 (691)
Q Consensus 159 ~~~G~~~----~~--~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 232 (691)
.++|+++ .. ..++.+|||+|++.++|++||+||+.|+...+ ...+.+.+++++++++.++|.+..++++.
T Consensus 62 ~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~- 137 (359)
T 3fvq_A 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH- 137 (359)
T ss_dssp EETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-
T ss_pred EECCEECCCCCCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHCCCHH-
T ss_conf 99999975455665541088899907875789999999999999876---99868999999999988699037558924-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHCCCEEEEE
Q ss_conf 8776559899999999999831998799919999999999999999999987-399689999479866898507879996
Q 005545 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RGGRTVITTIHQPSSRLYRMFDKVVVL 311 (691)
Q Consensus 233 ~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~~~H~p~~~i~~~~D~v~vL 311 (691)
.|||||||||+|||+|+.+|++|+|||||++||+..+.++.+.++++. +.|.|+|+++|+. .++..++|++++|
T Consensus 138 ----~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl 212 (359)
T 3fvq_A 138 ----ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVM 212 (359)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEE
T ss_pred ----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEE
T ss_conf ----57999999999999997399999996974367999999999999999985799899994999-9999879999999
Q ss_pred CCCEEEEECCHHHHHH
Q ss_conf 0985777449757998
Q 005545 312 SEGSPIYSGRAAQVMD 327 (691)
Q Consensus 312 ~~G~iv~~G~~~~~~~ 327 (691)
++|+++..|+++++..
T Consensus 213 ~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 213 KQGRILQTASPHELYR 228 (359)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEEECHHHHHH
T ss_conf 8998999818999974
No 4
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=365.31 Aligned_cols=220 Identities=30% Similarity=0.478 Sum_probs=185.8
Q ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 51799994999981478878655567899876555641255127999388199998699985899999998298999720
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G 156 (691)
...|+|+|++|+|+... ++.+|+|+|+++++|+.+||+||||||||||+++|.|.. ++.+|
T Consensus 413 ~g~I~~~nvsF~Y~~~~------------------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~G 473 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRP------------------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLKG 473 (1321)
T ss_dssp CCCEEEEEEEECCSSST------------------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSEE
T ss_pred CCCEEEEEEEEECCCCC------------------CCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCC-CCCCC
T ss_conf 87679998554079999------------------874333318862288278998058985778888754565-16448
Q ss_pred EEEECCEECCH----HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH-----HHHHHHCCCCCCCC
Q ss_conf 99999972791----0125489991589789999999999997761499889999999999-----99999909974235
Q 005545 157 KITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-----EMVIMELGLTRCRN 227 (691)
Q Consensus 157 ~I~~~G~~~~~----~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~ 227 (691)
+|.+||.++.. .+|+.++||+|++.++ +-|++||+.|+.. +.+.++..+.+ ++.++ .|++..+
T Consensus 474 ~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~~-----~~~~~~v~~a~~~a~l~~~i~--~lp~G~~ 545 (1321)
T 4f4c_A 474 KITIDGVDVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGKE-----GITREEMVAACKMANAEKFIK--TLPNGYN 545 (1321)
T ss_dssp EEEETTEETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTCT-----TCCHHHHHHHHHHTTCHHHHH--HSTTTTS
T ss_pred CCCCCCCCCHHCCHHHHHHCCCCCCCCCEEE-CCCHHHHHHHHCC-----CCHHHHHHHHHHHCCCHHHHH--CCCCCCC
T ss_conf 6157996501125999850466658753320-7861678864155-----220999999998756546887--0888886
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCE
Q ss_conf 53248877655989999999999983199879991999999999999999999998739968999947986689850787
Q 005545 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK 307 (691)
Q Consensus 228 ~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~ 307 (691)
|.+|+.. ..||||||||++||||++.+|++++||||||+||+.+...+.+.|+++.+ |+|+|+++|+++. ...+|+
T Consensus 546 T~vGe~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~ 621 (1321)
T 4f4c_A 546 TLVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADL 621 (1321)
T ss_dssp SEESSSS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSE
T ss_pred CEECCCC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCCHHH--HHHCCE
T ss_conf 0755898-87777787999999987259998998455446887899999999999847-9889997363878--986898
Q ss_pred EEEECCCEEEEECCHHHHHH
Q ss_conf 99960985777449757998
Q 005545 308 VVVLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 308 v~vL~~G~iv~~G~~~~~~~ 327 (691)
|++|++|++++.|++++++.
T Consensus 622 Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 622 IISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEEEETTEEEEEECHHHHHT
T ss_pred EEEEECCEEECCCCHHHHHH
T ss_conf 99963996513689999998
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=1.00 E-value=1 Score=361.48 Aligned_cols=221 Identities=27% Similarity=0.461 Sum_probs=196.3
Q ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 51799994999981478878655567899876555641255127999388199998699985899999998298999720
Q 005545 77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG 156 (691)
Q Consensus 77 ~~~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G 156 (691)
...|+++||+++|+. .+.+|+|+|+++++||+++|+|||||||||||++|+|.. .+.+|
T Consensus 12 ~~~l~~~~l~~~y~g--------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G 70 (355)
T 1z47_A 12 SMTIEFVGVEKIYPG--------------------GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE-RPTKG 70 (355)
T ss_dssp CEEEEEEEEEECCTT--------------------STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEE
T ss_pred CCEEEEEEEEEEECC--------------------CCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCC
T ss_conf 866999979999759--------------------978996348999799799999899970999999996799-88961
Q ss_pred EEEECCEECCH--HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999972791--0125489991589789999999999997761499889999999999999999099742355324887
Q 005545 157 KITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234 (691)
Q Consensus 157 ~I~~~G~~~~~--~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 234 (691)
+|.++|+++.. ..++.++||+|+..++|++||+||+.|+...+ ..++.+.+++++++++.++|.+..++++.
T Consensus 71 ~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~--- 144 (355)
T 1z47_A 71 DVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH--- 144 (355)
T ss_dssp EEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG---
T ss_pred EEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCCC---
T ss_conf 999999999868764574899926863578988999999999774---99878999999999987699458609920---
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEECC
Q ss_conf 7655989999999999983199879991999999999999999999998739-968999947986689850787999609
Q 005545 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSE 313 (691)
Q Consensus 235 ~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~vL~~ 313 (691)
.|||||||||+|||+|+.+|++|+|||||++||+.++.++.+.|++++++ |.|+|+++|++ .++..++|++++|++
T Consensus 145 --~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~ 221 (355)
T 1z47_A 145 --ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHE 221 (355)
T ss_dssp --GSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEET
T ss_pred --CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHHCCEEEEEEC
T ss_conf --18999999999999997399989996974368999999999999999986699999997999-999986999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 85777449757998
Q 005545 314 GSPIYSGRAAQVMD 327 (691)
Q Consensus 314 G~iv~~G~~~~~~~ 327 (691)
|+++..|+++++.+
T Consensus 222 G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 222 GNVEQFGTPEEVYE 235 (355)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999859999974
No 6
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=361.48 Aligned_cols=220 Identities=28% Similarity=0.462 Sum_probs=186.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 17999949999814788786555678998765556412551279993881999986999858999999982989997209
Q 005545 78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK 157 (691)
Q Consensus 78 ~~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~ 157 (691)
..|+|+||+|+|+... ...+|+|+|++++|||.+||+||||||||||+++|.|.. +|.+|+
T Consensus 1075 g~I~f~nVsf~Y~~~~------------------~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~ 1135 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERP------------------EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGE 1135 (1321)
T ss_dssp CCEEEEEEEECCTTSC------------------SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSE
T ss_pred CEEEEEEEEEECCCCC------------------CCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCE
T ss_conf 8189998798579999------------------882124516998898999998999981999999995686-389978
Q ss_pred EEECCEECCH----HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-------CCCCCC
Q ss_conf 9999972791----01254899915897899999999999977614998899999999999999990-------997423
Q 005545 158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL-------GLTRCR 226 (691)
Q Consensus 158 I~~~G~~~~~----~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~ 226 (691)
|++||.|+.. .+|+++++|+||+.+|+ -|++||+.|+.. +.+.+.++ +.++++.. .|++..
T Consensus 1136 I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~Gl 1207 (1321)
T 4f4c_A 1136 IFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGF 1207 (1321)
T ss_dssp EEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTT
T ss_pred EEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCCC---CCCCCHHH----HHHHHHHHCCHHHHHCCCCCC
T ss_conf 9999998654999999854599878997327-239999745499---99999999----999999829849997176789
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCC
Q ss_conf 55324887765598999999999998319987999199999999999999999999873996899994798668985078
Q 005545 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD 306 (691)
Q Consensus 227 ~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D 306 (691)
|+.+|+. ...||||||||++|||||+.+|++|+||||||+||+.+...|.+.|+++.+ ++|+|+++|+++. ...+|
T Consensus 1208 dT~vge~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~-~~TvI~IAHRLsT--i~~aD 1283 (1321)
T 4f4c_A 1208 ETRVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE-GRTCIVIAHRLNT--VMNAD 1283 (1321)
T ss_dssp CSEETTT-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS-SSEEEEECSSSST--TTTCS
T ss_pred CCEECCC-CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCHHH--HHHCC
T ss_conf 9982388-915699999999999999717998999681115789999999999999739-9989996068999--99699
Q ss_pred EEEEECCCEEEEECCHHHHHHH
Q ss_conf 7999609857774497579987
Q 005545 307 KVVVLSEGSPIYSGRAAQVMDY 328 (691)
Q Consensus 307 ~v~vL~~G~iv~~G~~~~~~~~ 328 (691)
+|+||++|+++++|+++++++.
T Consensus 1284 ~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1284 CIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp EEEEESSSSEEEEECHHHHHHC
T ss_pred EEEEEECCEEEEECCHHHHHHC
T ss_conf 9999989899998888999849
No 7
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=360.99 Aligned_cols=218 Identities=29% Similarity=0.494 Sum_probs=193.3
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|.. .+.+|+|
T Consensus 3 ~l~~~~l~~~y~---------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I 60 (359)
T 2yyz_A 3 SIRVVNLKKYFG---------------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY-KPTSGEI 60 (359)
T ss_dssp CEEEEEEEEEET---------------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEE
T ss_pred EEEEEEEEEEEC---------------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCEE
T ss_conf 899997999989---------------------988896558998699899999689823999999997799-8896299
Q ss_pred EECCEECCH--HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 999972791--012548999158978999999999999776149988999999999999999909974235532488776
Q 005545 159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 159 ~~~G~~~~~--~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~r 236 (691)
.++|+++.. ..++.++||+|+..++|++||+||+.|+...+ ..++.+.+++++++++.++|.+..++++.
T Consensus 61 ~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~----- 132 (359)
T 2yyz_A 61 YFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT----- 132 (359)
T ss_dssp EETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----
T ss_pred EECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHCCCHH-----
T ss_conf 9999999879864584899906864579988999999999765---99879999999999988699537628934-----
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEECCCE
Q ss_conf 55989999999999983199879991999999999999999999998739-96899994798668985078799960985
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 gLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~vL~~G~ 315 (691)
.|||||||||+|||+|+.+|++|+|||||++||+..+.++.+.|+++.++ |.|+|+++|++ .++..++|++++|++|+
T Consensus 133 ~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~ 211 (359)
T 2yyz_A 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGK 211 (359)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHHCCEEEEEECCE
T ss_conf 69999999999999997199989998975368999999999999999985699899991899-99998699999998998
Q ss_pred EEEECCHHHHHH
Q ss_conf 777449757998
Q 005545 316 PIYSGRAAQVMD 327 (691)
Q Consensus 316 iv~~G~~~~~~~ 327 (691)
++..|+++++.+
T Consensus 212 i~~~g~~~~l~~ 223 (359)
T 2yyz_A 212 LVQYGTPDEVYD 223 (359)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHH
T ss_conf 999679999973
No 8
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=360.68 Aligned_cols=218 Identities=33% Similarity=0.539 Sum_probs=194.7
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|.. .+.+|+|
T Consensus 3 ~l~~~~l~~~y~---------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I 60 (362)
T 2it1_A 3 EIKLENIVKKFG---------------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY-KPTSGKI 60 (362)
T ss_dssp CEEEEEEEEESS---------------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEE
T ss_pred EEEEEEEEEEEC---------------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEE
T ss_conf 799996999989---------------------978897558999799899999999935999999996699-8885099
Q ss_pred EECCEECCH--HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 999972791--012548999158978999999999999776149988999999999999999909974235532488776
Q 005545 159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 159 ~~~G~~~~~--~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~r 236 (691)
.++|+++.. ..++.++||+|+..++|++||+||+.|+...+ ..++.+.+++++++++.++|.+..++++.
T Consensus 61 ~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~----- 132 (362)
T 2it1_A 61 YFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW----- 132 (362)
T ss_dssp EETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----
T ss_pred EECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHCCHH-----
T ss_conf 9999999869975784899946764578987999999998764---89879999999999988599047608930-----
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEECCCE
Q ss_conf 55989999999999983199879991999999999999999999998739-96899994798668985078799960985
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 gLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~vL~~G~ 315 (691)
.|||||||||+|||+|+.+|++|+|||||++||+..+.++.+.|++++++ |.|+|+++|++ .++..++|++++|++|+
T Consensus 133 ~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~ 211 (362)
T 2it1_A 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGE 211 (362)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHHCCEEEEEECCE
T ss_conf 38999999999999997299999998954368999999999999999975798999988888-99998699999998998
Q ss_pred EEEECCHHHHHH
Q ss_conf 777449757998
Q 005545 316 PIYSGRAAQVMD 327 (691)
Q Consensus 316 iv~~G~~~~~~~ 327 (691)
++..|+++++..
T Consensus 212 i~~~g~~~~~~~ 223 (362)
T 2it1_A 212 ILQVGTPDEVYY 223 (362)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHH
T ss_conf 999769999973
No 9
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=1.00 E-value=1 Score=360.25 Aligned_cols=218 Identities=28% Similarity=0.473 Sum_probs=194.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|.. .+.+|+|
T Consensus 11 ~l~~~~l~~~y~---------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I 68 (372)
T 1v43_A 11 EVKLENLTKRFG---------------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGRI 68 (372)
T ss_dssp CEEEEEEEEEET---------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEE
T ss_pred EEEEEEEEEEEC---------------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEE
T ss_conf 699998999989---------------------978886548999799899999999986999999997699-8884099
Q ss_pred EECCEECCH--HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 999972791--012548999158978999999999999776149988999999999999999909974235532488776
Q 005545 159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236 (691)
Q Consensus 159 ~~~G~~~~~--~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~r 236 (691)
.++|+++.. ..++.++||+|+..++|++||+||+.|+...+ ..++.+.+++++++++.++|.+..++++.
T Consensus 69 ~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~----- 140 (372)
T 1v43_A 69 YFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA----- 140 (372)
T ss_dssp EETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----
T ss_pred EECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCHH-----
T ss_conf 9999999879865685899916764579988999999888764---89879999999999998599248639910-----
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEECCCE
Q ss_conf 55989999999999983199879991999999999999999999998739-96899994798668985078799960985
Q 005545 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS 315 (691)
Q Consensus 237 gLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~vL~~G~ 315 (691)
.|||||||||+|||+|+.+|++|+|||||++||+..+.++.+.|+++.++ |.|+|+++|++ .++..++|++++|++|+
T Consensus 141 ~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~ 219 (372)
T 1v43_A 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQ 219 (372)
T ss_dssp TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCE
T ss_conf 39999999999999996199999971987457999999999999999972898899994999-99998699999998998
Q ss_pred EEEECCHHHHHH
Q ss_conf 777449757998
Q 005545 316 PIYSGRAAQVMD 327 (691)
Q Consensus 316 iv~~G~~~~~~~ 327 (691)
++..|+++++..
T Consensus 220 i~~~g~~~~l~~ 231 (372)
T 1v43_A 220 LLQIGSPTEVYL 231 (372)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHH
T ss_conf 998589999973
No 10
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=1.00 E-value=1 Score=360.07 Aligned_cols=218 Identities=33% Similarity=0.501 Sum_probs=194.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545 79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158 (691)
Q Consensus 79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I 158 (691)
.|+++||+++|. .+.+|+|+|+++++||+++|+|||||||||||++|+|.. .+.+|+|
T Consensus 3 ~l~~~~l~~~y~---------------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I 60 (372)
T 1g29_1 3 GVRLVDVWKVFG---------------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQI 60 (372)
T ss_dssp EEEEEEEEEEET---------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEE
T ss_pred EEEEEEEEEEEC---------------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCEE
T ss_conf 899996999989---------------------988883138999699899999999937999999997699-8996389
Q ss_pred EECCEECCH--------HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999972791--------012548999158978999999999999776149988999999999999999909974235532
Q 005545 159 TYNGRQFSS--------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230 (691)
Q Consensus 159 ~~~G~~~~~--------~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 230 (691)
.++|+++.. ..++.++||+|+..++|++||+||+.|+...+ ..++.+.+++++++++.++|.+..++++
T Consensus 61 ~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~ 137 (372)
T 1g29_1 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP 137 (372)
T ss_dssp EETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG
T ss_pred EECCEECCCCCCCCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 9999998654443458876798899927875689988999999999775---9997999999999999879913760891
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEE
Q ss_conf 48877655989999999999983199879991999999999999999999998739-96899994798668985078799
Q 005545 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV 309 (691)
Q Consensus 231 g~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~ 309 (691)
. .|||||||||+|||+|+.+|++|+|||||++||+..+.++.+.|+++.++ |.|+|+++|++ .++..++|+++
T Consensus 138 ~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~ 211 (372)
T 1g29_1 138 R-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIA 211 (372)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEE
T ss_pred C-----CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHHCCEEE
T ss_conf 1-----29999999999999986589999987987568999999999999999986598999988998-99998699999
Q ss_pred EECCCEEEEECCHHHHHH
Q ss_conf 960985777449757998
Q 005545 310 VLSEGSPIYSGRAAQVMD 327 (691)
Q Consensus 310 vL~~G~iv~~G~~~~~~~ 327 (691)
+|++|+++..|+++++..
T Consensus 212 vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 212 VMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEECCHHHHHH
T ss_conf 995998998489999973
Done!