Your job contains 1 sequence.
>005546
MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDG
ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSAL
LLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLG
ILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFV
LFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFP
EVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFL
YNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISG
ELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHD
GGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSW
IVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILL
PQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIE
HQDLCGLFYFQISVLAGKCLKNYWIHVISCI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005546
(691 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2166424 - symbol:MOS7 "MODIFIER OF SNC1,7" spe... 2111 1.5e-218 1
DICTYBASE|DDB_G0279039 - symbol:DDB_G0279039 species:4468... 194 1.8e-11 1
FB|FBgn0026207 - symbol:mbo "members only" species:7227 "... 112 2.9e-07 2
MGI|MGI:104900 - symbol:Nup88 "nucleoporin 88" species:10... 120 4.0e-07 2
RGD|620182 - symbol:Nup88 "nucleoporin 88" species:10116 ... 121 9.8e-07 2
UNIPROTKB|Q99567 - symbol:NUP88 "Nuclear pore complex pro... 107 1.1e-06 2
UNIPROTKB|Q3SZ56 - symbol:NUP88 "Nucleoporin 88kDa" speci... 108 1.4e-06 2
ZFIN|ZDB-GENE-050522-297 - symbol:nup88 "nucleoporin 88" ... 104 2.8e-06 2
UNIPROTKB|F1NIC8 - symbol:NUP88 "Uncharacterized protein"... 94 6.5e-05 2
>TAIR|locus:2166424 [details] [associations]
symbol:MOS7 "MODIFIER OF SNC1,7" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0005643 "nuclear
pore" evidence=IDA] [GO:0006611 "protein export from nucleus"
evidence=IMP] [GO:0009627 "systemic acquired resistance"
evidence=IMP] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] EMBL:CP002688
GO:GO:0005643 GO:GO:0009627 GO:GO:0006611 EMBL:AB005237 KO:K14318
InterPro:IPR019321 Pfam:PF10168 IPI:IPI00522426 RefSeq:NP_196187.1
UniGene:At.32966 ProteinModelPortal:Q9FFK6 STRING:Q9FFK6
PRIDE:Q9FFK6 EnsemblPlants:AT5G05680.1 GeneID:830452
KEGG:ath:AT5G05680 TAIR:At5g05680 InParanoid:Q9FFK6 OMA:EATFPDL
PhylomeDB:Q9FFK6 ProtClustDB:CLSN2686655 Genevestigator:Q9FFK6
Uniprot:Q9FFK6
Length = 810
Score = 2111 (748.2 bits), Expect = 1.5e-218, P = 1.5e-218
Identities = 409/649 (63%), Positives = 498/649 (76%)
Query: 1 MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDG 60
M+FNF+ +E + DSR S TPKE V WVPLQ HPVF++ + ++ P+N +AWDG
Sbjct: 1 MKFNFNETEDAPDSRRSPTPKEPVRWVPLQSHPVFASLPSSQDEPAVSQLFPRNFMAWDG 60
Query: 61 ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSAL 120
SR+YYWD LHR+S+RLGEP+P+S+LAA PSKVM+ D+++ F VS+ISIN++GSA+
Sbjct: 61 DSRVYYWDSRRYLLHRLSLRLGEPEPSSVLAAVPSKVMQPDLQVTFSVSKISINKSGSAV 120
Query: 121 LLIGSDGLCVMYLYGR-TCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHL 179
LL GSDG+CVMYL+GR + DN +ICR VS+GS+IY SS + I LQ SWHP SDTHL
Sbjct: 121 LLAGSDGICVMYLFGRASVIEDN--VICRVVSIGSEIYTSSDSAITLLQASWHPDSDTHL 178
Query: 180 GILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVF 239
GILSSD+VFRLF+L+SD PEQEYYLQP EPGR R A+SI P DFSFGGDHLWDRF+VF
Sbjct: 179 GILSSDAVFRLFDLSSDTELPEQEYYLQPGEPGRSRTASSIYPADFSFGGDHLWDRFTVF 238
Query: 240 VLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATF 299
+LF+DGSIYILCPVVPFGSVYKWES++EIYNDA +G++S NSLAV NSSLAI WLEATF
Sbjct: 239 ILFTDGSIYILCPVVPFGSVYKWESVMEIYNDANMYGVKSSNSLAVSNSSLAIEWLEATF 298
Query: 300 PEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSF 359
P++ ++ + +KA P+AL D+S++LQGPL K G DE AVR AEC+GRAVS
Sbjct: 299 PDLTEQGTRGENILVVKAQPYALLDASLALQGPLYKASSGDGDEDFAVREAECKGRAVSL 358
Query: 360 LYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPIS 419
LYNLVSKDSI+VT+WS GQLQ+DAL DEIQPVW RLR++S ++I G+AMICE
Sbjct: 359 LYNLVSKDSILVTAWSAGQLQVDALVDEIQPVWISGNSSRLRMNSHNKIQGVAMICESNI 418
Query: 420 GELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVH 479
ELPV + PLDHTVWLGHPPPLLRLA VDLALPK E GS++T+ D L+ ERIY +H
Sbjct: 419 SELPVATSNLPLDHTVWLGHPPPLLRLAMVDLALPKMREGGSLVTLFADSLLPERIYSLH 478
Query: 480 DGGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYS 539
DGGIDS VLH LPFTSQ GKDE ++PSVH VL+TCQ E S+ SPL GFV LSDSFGYS
Sbjct: 479 DGGIDSTVLHSLPFTSQASGKDEALKTPSVHTVLSTCQ-EESAVSPLLGFVPLSDSFGYS 537
Query: 540 WIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGA--KKERDTPDIISKELLSGPKV 597
WIV V S+ EC+V EMKTW+LLLP+ + ++K +V A KKE++ IISKELL+GPK+
Sbjct: 538 WIVAVLSSGECIVAEMKTWDLLLPIHVSTDK-TVSSSAIEKKEQENSCIISKELLAGPKI 596
Query: 598 ILLPQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNH 646
+ P A PN RS A+S+EGRS L Y LF ENY+EYAHKV L H
Sbjct: 597 RIAPHALPNQRSTPANSVEGRSILLDYVKLFHENYIEYAHKVH-FELQH 644
>DICTYBASE|DDB_G0279039 [details] [associations]
symbol:DDB_G0279039 species:44689 "Dictyostelium
discoideum" [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0279039 EMBL:AAFI02000026 RefSeq:XP_641932.1
EnsemblProtists:DDB0215314 GeneID:8621844 KEGG:ddi:DDB_G0279039
eggNOG:NOG289139 InParanoid:Q54XC9 Uniprot:Q54XC9
Length = 961
Score = 194 (73.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 78/295 (26%), Positives = 135/295 (45%)
Query: 28 PL-QKHPVFSA-PDAVRNGGGKFNGAPKNLVAWDG-ASRLYYWDQNAQC-LHRISVRLGE 83
PL K P S P + + + + KN ++ + +S +YY+ +C L+ I V E
Sbjct: 14 PLFSKTPQSSQKPSSFTSENNELSFTAKNFLSVNNQSSEIYYYSP-IECKLYVIKV---E 69
Query: 84 PDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSS--- 140
+ + A + ++ +K+NFEV +I +N + L + G ++ L +T +S
Sbjct: 70 STLDNTICAIRFQELK--LKINFEVYKIELNEDSRYLCISGHVNCIIVDLNPQTVNSYFT 127
Query: 141 --------DNKT-----IICRTVSVGSQIYFSS-SNVIRTLQVSWHPYSDTHLGILSSDS 186
+NKT + R+ ++ Y S SN+I+ QV WHP S+ HL IL S++
Sbjct: 128 SQEIFSDQENKTFGYDSLTVRSFTLDKTFYQSQISNIIK--QVEWHPLSNIHLVILYSNN 185
Query: 187 VFRLFNLASDVMQPEQEYYLQPVEP---------GRYRNAASICP--VDFSFGGD-HLWD 234
+++N+ S + EQ + L+ + RN + F FG + + W
Sbjct: 186 TLKIYNIQSGNEEIEQTFNLESIHTFESLKNLKNNDIRNQTKNTKKFISFCFGSNINFWT 245
Query: 235 RFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSS 289
RF++F+L G I+ LCPV+P + + Y D Q L N + N+S
Sbjct: 246 RFTIFLLSDSGEIFNLCPVIPNNCLVE----TSFYRDFQNHILYEKNQ--IENNS 294
>FB|FBgn0026207 [details] [associations]
symbol:mbo "members only" species:7227 "Drosophila
melanogaster" [GO:0005643 "nuclear pore" evidence=ISS;IDA;NAS]
[GO:0006955 "immune response" evidence=NAS] [GO:0019730
"antimicrobial humoral response" evidence=IMP] [GO:0005635 "nuclear
envelope" evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0007424 "open tracheal system development" evidence=TAS]
[GO:0035147 "branch fusion, open tracheal system" evidence=TAS]
[GO:0046826 "negative regulation of protein export from nucleus"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
EMBL:AE014297 GO:GO:0022008 GO:GO:0031965 GO:GO:0005643
GO:GO:0006606 GO:GO:0019730 GO:GO:0051028 GO:GO:0035147
GO:GO:0046826 KO:K14318 EMBL:AY004880 EMBL:AY051827
RefSeq:NP_524330.2 UniGene:Dm.1710 ProteinModelPortal:Q9GYU8
DIP:DIP-18195N IntAct:Q9GYU8 MINT:MINT-308144 STRING:Q9GYU8
PaxDb:Q9GYU8 EnsemblMetazoa:FBtr0082668 GeneID:41562
KEGG:dme:Dmel_CG6819 CTD:41562 FlyBase:FBgn0026207 eggNOG:NOG286836
GeneTree:ENSGT00390000015063 InParanoid:Q9GYU8 OMA:FAYHNAG
OrthoDB:EOG4FTTFZ PhylomeDB:Q9GYU8 GenomeRNAi:41562 NextBio:824406
Bgee:Q9GYU8 GermOnline:CG6819 InterPro:IPR019321 Pfam:PF10168
Uniprot:Q9GYU8
Length = 702
Score = 112 (44.5 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 29/96 (30%), Positives = 52/96 (54%)
Query: 104 LNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSS----DNKTII-CRTVSVGSQIYF 158
++ EV R+ + GS + L G G+ +M L R D K +I CRT + +Q++
Sbjct: 75 VSLEVDRVLASNEGSLVALSGPRGVVIMELPRRWGPDGYYKDGKPVITCRTFGLDTQLFL 134
Query: 159 SSSNVIRTLQVSWHPYS--DTHLGILSSDSVFRLFN 192
+ + + QV WHP+S D+ L +L +++ R++N
Sbjct: 135 KNPH-LEVRQVRWHPHSVSDSTLLVLLNNNTIRVYN 169
Score = 91 (37.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 62/285 (21%), Positives = 117/285 (41%)
Query: 395 NIPPRLRV-DSQDRIHGLAMICEPISGELPVVKLDQP--LDHTVWLGHPPPLLRLATVDL 451
++PP + + +S ++H A++ E + E ++D ++ ++ H + L
Sbjct: 297 SLPPTIVIAESNGKLHH-ALLMEAEATEHSFNEVDDSVLIEPAEYVVHVLETVELELGIS 355
Query: 452 ALPKNTESGSI-ITMSIDPLMQERIYIVHDGGIDSVVLHFLP----FTSQTRGKD--ETN 504
A E G+ I + D + + R + H+ G+ +V + F+ + +D E
Sbjct: 356 APATGKEGGNCPIYLKRDLINELRYFAYHNAGLHAVTVSFIAELQRYLESESDEDRLELA 415
Query: 505 RSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPV 564
S S +L T + + + + G L G ++G S Q VI +K L++
Sbjct: 416 VSASAEYILCTKFDSSETVNAVFGLALLQIPAGIVLLLG--SGQ---VISLK---LVIDA 467
Query: 565 QI---DSEKKSVDLGAKKERDTPDIIS--KELLSGPKVILLPQASPNLRSVAADSIEGRS 619
Q+ +E K VD ++ P + K LL + + P + L S +A E
Sbjct: 468 QLLVTPNENKPVDSEVSQQESGPPFVDTIKSLLQ--RSVNQPILADKLSSPSAQ--ESFE 523
Query: 620 TLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDL 664
L+Q + +E Y++ VR + HI + E QDL
Sbjct: 524 LLNQAIEVLREQYLKRHDLVRAAFTRHINQIQLKKEQQLQEIQDL 568
>MGI|MGI:104900 [details] [associations]
symbol:Nup88 "nucleoporin 88" species:10090 "Mus musculus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0015288 "porin activity"
evidence=IEA] [GO:0046930 "pore complex" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0055085 "transmembrane
transport" evidence=IEA] MGI:MGI:104900 GO:GO:0015031 GO:GO:0005643
GO:GO:0051028 KO:K14318 GeneTree:ENSGT00390000015063
InterPro:IPR019321 Pfam:PF10168 CTD:4927 eggNOG:NOG274278
HOGENOM:HOG000234330 HOVERGEN:HBG052700 OMA:PLYILYE ChiTaRS:NUP88
EMBL:AJ532593 EMBL:AK028563 EMBL:BC032929 IPI:IPI00229021
IPI:IPI00461120 IPI:IPI00461121 RefSeq:NP_001076800.1
RefSeq:NP_765982.2 UniGene:Mm.288962 ProteinModelPortal:Q8CEC0
IntAct:Q8CEC0 STRING:Q8CEC0 PhosphoSite:Q8CEC0 PaxDb:Q8CEC0
PRIDE:Q8CEC0 Ensembl:ENSMUST00000035283 Ensembl:ENSMUST00000108530
Ensembl:ENSMUST00000108531 GeneID:19069 KEGG:mmu:19069
InParanoid:Q8CEC0 NextBio:295584 Bgee:Q8CEC0 CleanEx:MM_NUP88
Genevestigator:Q8CEC0 GermOnline:ENSMUSG00000040667 Uniprot:Q8CEC0
Length = 753
Score = 120 (47.3 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 39/151 (25%), Positives = 75/151 (49%)
Query: 53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSI---LAAFPSKVMRADVKLNFEVS 109
+NLV G L+ WD + VRL P + L+ + +++ + L FE+
Sbjct: 60 RNLVFGLGGE-LFLWDAEGSAF--LVVRLRGPSGGGVEPPLSQY-QRLLCINPPL-FEIH 114
Query: 110 RISINRNGSALLLIGSDGLCVMYL---YGRTCSSDN--KTIICRTVSVGSQIYFSSSNVI 164
++ ++ + LIGS GL + L +G+ + T+ C T+ + + +F+SS +
Sbjct: 115 QVLLSPTQHHVALIGSKGLMALELPQRWGKDSEFEGGKATVNCSTIPIAER-FFTSSTSL 173
Query: 165 RTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
+W+P D H+ +L+SD+V R+++L
Sbjct: 174 TLKHAAWYPSEMLDPHIVLLTSDNVIRIYSL 204
Score = 82 (33.9 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 45/170 (26%), Positives = 73/170 (42%)
Query: 463 ITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSPS----------VHPV 512
I + DP R + H+ G+ SV L ++ + G DE ++ V +
Sbjct: 394 IKLHRDPKCPSRYHCSHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELTAEQKCFVEHI 453
Query: 513 LNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEM-KTWNL----LLPVQID 567
L T P+P+ GF + D G + I +TST EC++ + T + LL Q D
Sbjct: 454 LCTKPLPCRQPAPIRGFWIVPDILGPTMIC-ITSTYECLIRPLLSTVHPASPPLLCTQED 512
Query: 568 SEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPN-LRSVAADSIE 616
+E L E TPD K + +++ A+P L++ +A S E
Sbjct: 513 AEVAESPLRILAE--TPDSFEKHI---KRILQRSAANPAFLKNCSARSSE 557
>RGD|620182 [details] [associations]
symbol:Nup88 "nucleoporin 88" species:10116 "Rattus norvegicus"
[GO:0005634 "nucleus" evidence=ISO] [GO:0005643 "nuclear pore"
evidence=IDA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] RGD:620182 GO:GO:0015031 GO:GO:0005643 GO:GO:0051028
KO:K14318 InterPro:IPR019321 Pfam:PF10168 CTD:4927 eggNOG:NOG274278
HOGENOM:HOG000234330 HOVERGEN:HBG052700 OrthoDB:EOG43R3M9
EMBL:U93692 EMBL:BC072524 IPI:IPI00194687 RefSeq:NP_446068.1
UniGene:Rn.11042 ProteinModelPortal:O08658 STRING:O08658
PRIDE:O08658 GeneID:113929 KEGG:rno:113929 UCSC:RGD:620182
NextBio:618042 Genevestigator:O08658 GermOnline:ENSRNOG00000006126
Uniprot:O08658
Length = 742
Score = 121 (47.7 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 39/151 (25%), Positives = 76/151 (50%)
Query: 53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSI---LAAFPSKVMRADVKLNFEVS 109
+NLV G L+ WD + VRL P S+ L+ + +++ + L FE+
Sbjct: 60 RNLVFGLGGE-LFLWDAEGSAF--LVVRLRGPSGGSVEPPLSQY-QRLLCINPPL-FEIH 114
Query: 110 RISINRNGSALLLIGSDGLCVMYL---YGRTCSSDN--KTIICRTVSVGSQIYFSSSNVI 164
++ ++ + LIG+ GL + L +G+ + T+ C T+ + + +F+SS +
Sbjct: 115 QVLLSPTQHHVALIGTKGLMALELPQRWGKDSEFEGGKATVNCSTIPIAER-FFTSSTSL 173
Query: 165 RTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
+W+P D H+ +L+SD+V R+++L
Sbjct: 174 TLKHAAWYPSEMLDPHIVLLTSDNVIRIYSL 204
Score = 77 (32.2 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 31/119 (26%), Positives = 53/119 (44%)
Query: 444 LRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDET 503
L+LA+ + P ++ I + DP R + H+ G+ SV L ++ + G DE
Sbjct: 376 LKLASAEDD-PFASDFSCPIKLHRDPKCPSRYHCSHEAGVHSVGLTWIHKLHKFLGSDEE 434
Query: 504 NRSPS----------VHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVV 552
++ V +L T P+P+ GF + D G + I +TST EC++
Sbjct: 435 DKDSLQELTAEQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTMIC-ITSTYECLI 492
>UNIPROTKB|Q99567 [details] [associations]
symbol:NUP88 "Nuclear pore complex protein Nup88"
species:9606 "Homo sapiens" [GO:0015031 "protein transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005643 "nuclear pore" evidence=IEA] [GO:0005215 "transporter
activity" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0005975 "carbohydrate metabolic process" evidence=TAS]
[GO:0008645 "hexose transport" evidence=TAS] [GO:0010827
"regulation of glucose transport" evidence=TAS] [GO:0015758
"glucose transport" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=TAS] [GO:0044281 "small molecule metabolic process"
evidence=TAS] [GO:0055085 "transmembrane transport" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_111217 Reactome:REACT_15518
GO:GO:0005829 Reactome:REACT_116125 Reactome:REACT_6900
EMBL:CH471108 GO:GO:0016032 GO:GO:0044281 GO:GO:0015031
GO:GO:0005975 GO:GO:0005643 GO:GO:0019221 GO:GO:0015758
GO:GO:0010827 GO:GO:0055085 GO:GO:0005215 GO:GO:0051028 KO:K14318
InterPro:IPR019321 Pfam:PF10168 EMBL:Y08612 EMBL:BC000335
IPI:IPI00001738 RefSeq:NP_002523.2 UniGene:Hs.584784
ProteinModelPortal:Q99567 IntAct:Q99567 MINT:MINT-191368
STRING:Q99567 PhosphoSite:Q99567 DMDM:25008854 PaxDb:Q99567
PeptideAtlas:Q99567 PRIDE:Q99567 Ensembl:ENST00000573584
GeneID:4927 KEGG:hsa:4927 UCSC:uc002gbo.2 CTD:4927
GeneCards:GC17M005180 HGNC:HGNC:8067 HPA:CAB002209 HPA:HPA021816
MIM:602552 neXtProt:NX_Q99567 PharmGKB:PA31855 eggNOG:NOG274278
HOGENOM:HOG000234330 HOVERGEN:HBG052700 InParanoid:Q99567
OMA:PLYILYE OrthoDB:EOG43R3M9 PhylomeDB:Q99567 ChiTaRS:NUP88
GenomeRNAi:4927 NextBio:18975 ArrayExpress:Q99567 Bgee:Q99567
CleanEx:HS_NUP88 Genevestigator:Q99567 GermOnline:ENSG00000108559
Uniprot:Q99567
Length = 741
Score = 107 (42.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 41/151 (27%), Positives = 72/151 (47%)
Query: 53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLN---FEVS 109
+N+V G L+ WD + VRL P A S+ R + +N FE+
Sbjct: 58 RNVVFGLGGE-LFLWDGEDSSF--LVVRLRGPSGGGEEPAL-SQYQRL-LCINPPLFEIY 112
Query: 110 RISINRNGSALLLIGSDGLCVMYL---YGRTCSSDN--KTIICRTVSVGSQIYFSSSNVI 164
++ ++ + LIG GL V+ L +G+ + T+ C T V + +F+SS +
Sbjct: 113 QVLLSPTQHHVALIGIKGLMVLELPKRWGKNSEFEGGKSTVNCSTTPVAER-FFTSSTSL 171
Query: 165 RTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
+W+P D H+ +L+SD+V R+++L
Sbjct: 172 TLKHAAWYPSEILDPHVVLLTSDNVIRIYSL 202
Score = 91 (37.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 49/217 (22%), Positives = 88/217 (40%)
Query: 454 PKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDE----------T 503
P +++ + + DP R + H+ G+ SV L ++ + G DE T
Sbjct: 384 PFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELST 443
Query: 504 NRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLP 563
+ V +L T P+P+ GF + D G + I +TST EC++ W LL
Sbjct: 444 EQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTMIC-ITSTYECLI-----WPLLST 497
Query: 564 VQIDSE-----KKSVDLGAKKER---DTPDIISKELLSG-PKVILLPQ-ASPNLRSVAAD 613
V S ++ V++ R +TPD K + S + + P + + +A
Sbjct: 498 VHPASPPLLCTREDVEVAESPLRVLAETPDSFEKHIRSILQRSVANPAFLKASEKDIAPP 557
Query: 614 SIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLV 650
E L + +F+E Y+ ++ +KL+
Sbjct: 558 PEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLL 594
>UNIPROTKB|Q3SZ56 [details] [associations]
symbol:NUP88 "Nucleoporin 88kDa" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] GO:GO:0005634 KO:K14318
eggNOG:NOG286836 GeneTree:ENSGT00390000015063 InterPro:IPR019321
Pfam:PF10168 CTD:4927 HOGENOM:HOG000234330 HOVERGEN:HBG052700
OMA:PLYILYE OrthoDB:EOG43R3M9 EMBL:DAAA02048722 EMBL:BC103127
IPI:IPI00698753 RefSeq:NP_001029394.1 UniGene:Bt.4747 STRING:Q3SZ56
Ensembl:ENSBTAT00000001625 GeneID:504786 KEGG:bta:504786
InParanoid:Q3SZ56 NextBio:20866830 Uniprot:Q3SZ56
Length = 742
Score = 108 (43.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 39/151 (25%), Positives = 72/151 (47%)
Query: 53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLN---FEVS 109
+NLV G L+ WD + VRL P + S+ R + +N FE+
Sbjct: 59 RNLVLGLGGE-LFLWDPEESSF--LVVRLRGPSGAGEEPSL-SQYQRL-LCINPPLFEIY 113
Query: 110 RISINRNGSALLLIGSDGLCVMYL---YGRTCSSDN--KTIICRTVSVGSQIYFSSSNVI 164
++ ++ + LIG GL ++ L +G+ + T+ C T V + +F+SS +
Sbjct: 114 QVLLSPTQHHVALIGIKGLMILELPKRWGKNSEFEGGKSTVNCSTTPVAER-FFTSSTSL 172
Query: 165 RTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
+W+P + H+ +L+SD+V R+++L
Sbjct: 173 TLKHAAWYPSEMLEPHIVLLTSDNVIRIYSL 203
Score = 89 (36.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 52/231 (22%), Positives = 95/231 (41%)
Query: 454 PKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDE----------T 503
P +++ I + DP R + H+ G+ SV L ++ + G DE T
Sbjct: 385 PFDSDFSCPIKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELAT 444
Query: 504 NRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEM-KTWNLLL 562
+ V +L T P+P+ GF + D G + I +TST EC++ + T +
Sbjct: 445 EQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTMIC-ITSTYECLIRPLLSTVHPAS 503
Query: 563 PVQIDSEKKSVDLGAKKER---DTPDIISKELLSGPKVILLPQASPN-LRSVAADSI--- 615
P + + ++ V++ R +TPD K + S ++ A+P L+S D
Sbjct: 504 PPLLCT-REDVEVAESPLRILAETPDSFEKHIRS---ILQRSVANPAFLKSSEKDMAPPP 559
Query: 616 -EGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLC 665
E + + +F+E Y+ ++ +KL L +E + C
Sbjct: 560 EECLQLISRATQVFREQYILKQDLAKEEIQRRVKL-LCDQKKKQLEDLNYC 609
>ZFIN|ZDB-GENE-050522-297 [details] [associations]
symbol:nup88 "nucleoporin 88" species:7955 "Danio
rerio" [GO:0008150 "biological_process" evidence=ND]
ZFIN:ZDB-GENE-050522-297 KO:K14318 InterPro:IPR019321 Pfam:PF10168
CTD:4927 HOVERGEN:HBG052700 EMBL:BC095815 IPI:IPI00607279
RefSeq:NP_001018302.1 UniGene:Dr.4121 STRING:Q501Y6 PRIDE:Q501Y6
GeneID:321744 KEGG:dre:321744 InParanoid:Q501Y6 NextBio:20807516
ArrayExpress:Q501Y6 Bgee:Q501Y6 Uniprot:Q501Y6
Length = 720
Score = 104 (41.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 41/143 (28%), Positives = 70/143 (48%)
Query: 64 LYYWDQNAQCLHRISVRL----GEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSA 119
L+ WD + ++R GEPD + ++ + L FEV + ++ +
Sbjct: 49 LFIWDSVESVFYTTNLRQLNSDGEPDTSRY-----QTLLCINPPL-FEVCLVLVSPSQYH 102
Query: 120 LLLIGSDGLCVMYL---YGRTCSSDNKTII--CRTVSVGSQIYFSSSNVIRTL-QVSWHP 173
+ LIG G V+ L +G+ + I C+T+ V + + SS++V TL Q W+P
Sbjct: 103 VALIGQRGATVLELPQRWGKKSEFEGGRIQINCKTIPVAERFFTSSASV--TLRQAVWYP 160
Query: 174 YSDT---HLGILSSDSVFRLFNL 193
S+T HL +L+SD+ R +NL
Sbjct: 161 -SETEEPHLVLLTSDNTIRFYNL 182
Score = 90 (36.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 32/104 (30%), Positives = 48/104 (46%)
Query: 463 ITMSIDPLMQERIYIVHDGGIDSVVLHFLP-----FTSQTRGKDETNRSPS-----VHPV 512
I + DPL Q R + H+ G+ SV L + S KD + V +
Sbjct: 373 IRLHRDPLCQHRYHCTHEAGVHSVGLTWFKKLHKFLESDEEDKDSLQELAAEQRCIVEHI 432
Query: 513 LNTCQGETSSPSPLCGFVSLSD-SFGYSWIVGVTSTQECVVIEM 555
L T S P+P+ GF +SD S G + I +TST EC+++ +
Sbjct: 433 LCTRPLANSLPAPVRGFWIVSDLSLGATMIC-ITSTYECLLLPL 475
>UNIPROTKB|F1NIC8 [details] [associations]
symbol:NUP88 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] GO:GO:0005634
GeneTree:ENSGT00390000015063 InterPro:IPR019321 Pfam:PF10168
OMA:PLYILYE EMBL:AADN02025993 IPI:IPI00593014
Ensembl:ENSGALT00000002637 Uniprot:F1NIC8
Length = 722
Score = 94 (38.1 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 46/187 (24%), Positives = 87/187 (46%)
Query: 25 EWVPLQKH----PVFSAPDAVRNGGGKFNGAPKN------LVAWDGASRLYYWDQNAQCL 74
EW P ++ P +A +R+ G + AP++ L+ DG L WD L
Sbjct: 5 EWGPAEQWRAALPQHAAFGRLRDSGPAPSAAPRSPLIRSLLLGLDGD--LLLWDGERGAL 62
Query: 75 HRISVR-LGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYL 133
I +R L +P L + + ++ + L F ++R S + LIG+ GL + L
Sbjct: 63 LDIDLRRLSGAEPE--LGRYQT-LLCINPPL-FCITRCSAPLF-CHVALIGTKGLSAVEL 117
Query: 134 ---YGRTCSSDN--KTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--DTHLGILSSDS 186
+G+ + T+ C T+ + + +F+SS + +W+P + H+ +L+SD+
Sbjct: 118 PKRWGKNSEFEGGKATVNCSTIPIAER-FFTSSTSLTLKHAAWYPCETLEPHVVLLTSDN 176
Query: 187 VFRLFNL 193
R+++L
Sbjct: 177 TIRIYSL 183
Score = 87 (35.7 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 32/124 (25%), Positives = 54/124 (43%)
Query: 444 LRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDET 503
L+LA+ D P ++ I + DP R + H+ G+ SV L ++ + G DE
Sbjct: 355 LKLASGDEEEPLESDFSCPIKLHRDPKCPTRYHCTHEAGVHSVGLTWISKLQKFLGSDEE 414
Query: 504 NRSPS----------VHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVI 553
++ V +L T P+P+ GF +SD G + I +T+ EC+
Sbjct: 415 DKDGLQELGAEQKCFVEHILCTKPLPCRQPAPVRGFWIVSDVLGPTMIC-ITNNYECITR 473
Query: 554 EMKT 557
+ T
Sbjct: 474 PLLT 477
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 691 691 0.00081 121 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 627 (67 KB)
Total size of DFA: 397 KB (2192 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 57.15u 0.13s 57.28t Elapsed: 00:00:03
Total cpu time: 57.15u 0.13s 57.28t Elapsed: 00:00:03
Start: Tue May 21 08:46:46 2013 End: Tue May 21 08:46:49 2013