BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005546
(691 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O08658|NUP88_RAT Nuclear pore complex protein Nup88 OS=Rattus norvegicus GN=Nup88
PE=1 SV=1
Length = 742
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 16/151 (10%)
Query: 53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLN---FEVS 109
+NLV G L+ WD + VRL P S+ S+ R + +N FE+
Sbjct: 60 RNLVFGLGGE-LFLWDAEGSAF--LVVRLRGPSGGSVEPPL-SQYQRL-LCINPPLFEIH 114
Query: 110 RISINRNGSALLLIGSDGLCVMYLYGR-----TCSSDNKTIICRTVSVGSQIYFSSSNVI 164
++ ++ + LIG+ GL + L R T+ C T+ + + +F+SS +
Sbjct: 115 QVLLSPTQHHVALIGTKGLMALELPQRWGKDSEFEGGKATVNCSTIPIAER-FFTSSTSL 173
Query: 165 RTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
+W+P D H+ +L+SD+V R+++L
Sbjct: 174 TLKHAAWYPSEMLDPHIVLLTSDNVIRIYSL 204
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 463 ITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSP----------SVHPV 512
I + DP R + H+ G+ SV L ++ + G DE ++ V +
Sbjct: 394 IKLHRDPKCPSRYHCSHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELTAEQKCFVEHI 453
Query: 513 LNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVV 552
L T P+P+ GF + D G + I +TST EC++
Sbjct: 454 LCTKPLPCRQPAPIRGFWIVPDILGPTMIC-ITSTYECLI 492
>sp|Q8CEC0|NUP88_MOUSE Nuclear pore complex protein Nup88 OS=Mus musculus GN=Nup88 PE=2
SV=1
Length = 753
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 106 FEVSRISINRNGSALLLIGSDGLCVMYLYGR-----TCSSDNKTIICRTVSVGSQIYFSS 160
FE+ ++ ++ + LIGS GL + L R T+ C T+ + + +F+S
Sbjct: 111 FEIHQVLLSPTQHHVALIGSKGLMALELPQRWGKDSEFEGGKATVNCSTIPIAER-FFTS 169
Query: 161 SNVIRTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
S + +W+P D H+ +L+SD+V R+++L
Sbjct: 170 STSLTLKHAAWYPSEMLDPHIVLLTSDNVIRIYSL 204
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 463 ITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSP----------SVHPV 512
I + DP R + H+ G+ SV L ++ + G DE ++ V +
Sbjct: 394 IKLHRDPKCPSRYHCSHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELTAEQKCFVEHI 453
Query: 513 LNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVV 552
L T P+P+ GF + D G + I +TST EC++
Sbjct: 454 LCTKPLPCRQPAPIRGFWIVPDILGPTMIC-ITSTYECLI 492
>sp|Q99567|NUP88_HUMAN Nuclear pore complex protein Nup88 OS=Homo sapiens GN=NUP88 PE=1
SV=2
Length = 741
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 106 FEVSRISINRNGSALLLIGSDGLCVMYL---YGRTCSSD--NKTIICRTVSVGSQIYFSS 160
FE+ ++ ++ + LIG GL V+ L +G+ + T+ C T V + +F+S
Sbjct: 109 FEIYQVLLSPTQHHVALIGIKGLMVLELPKRWGKNSEFEGGKSTVNCSTTPVAER-FFTS 167
Query: 161 SNVIRTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
S + +W+P D H+ +L+SD+V R+++L
Sbjct: 168 STSLTLKHAAWYPSEILDPHVVLLTSDNVIRIYSL 202
Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 32/220 (14%)
Query: 454 PKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDE----------T 503
P +++ + + DP R + H+ G+ SV L ++ + G DE T
Sbjct: 384 PFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELST 443
Query: 504 NRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLP 563
+ V +L T P+P+ GF + D G + I +TST EC++ W LL
Sbjct: 444 EQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTMIC-ITSTYECLI-----WPLLST 497
Query: 564 VQIDS-----EKKSVDLGAKKER---DTPDIISKELLSGPKVILLPQASPNL-----RSV 610
V S ++ V++ R +TPD K + S ++ A+P + +
Sbjct: 498 VHPASPPLLCTREDVEVAESPLRVLAETPDSFEKHIRS---ILQRSVANPAFLKASEKDI 554
Query: 611 AADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLV 650
A E L + +F+E Y+ ++ +KL+
Sbjct: 555 APPPEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLL 594
>sp|Q9P382|NUP82_SCHPO Nucleoporin nup82 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup82 PE=3 SV=1
Length = 803
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 70/345 (20%), Positives = 134/345 (38%), Gaps = 51/345 (14%)
Query: 22 EEVEWVP-LQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVR 80
+EV W L+KHP + F PK+L A++ + + Q + + R
Sbjct: 8 QEVSWTDILEKHPALRWIKPIPEDWEIF---PKHLCAFES----FLYVAVGQEVRSLDCR 60
Query: 81 LGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSS 140
L + + F K+ + L+F + +I +++NG L ++G + ++ L R+ S
Sbjct: 61 LLKHKNEASHKNFYKKLFNPE--LDFMIEQICLSKNGRFLAVVGKSKIVILGL--RSKLS 116
Query: 141 DNKTIICRTVSVG---------------------SQIYFSSSNVI----RTLQVSWHPY- 174
+ + + G S++ S VI + + V +HP
Sbjct: 117 EQNPLAESVSNFGESVNNFSNSEHQENGTNSLKLSEVTICSVAVINPSSQIVSVRFHPLG 176
Query: 175 -SDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASI---CPVDFSFGG- 229
S L +L+ S+ L+ + V+ P+ E L+ A + P F F
Sbjct: 177 KSGRSLVVLTETSLL-LYEAGNGVLMPDYEIPLKLTHQASNSFDADVDLHIPTAFCFSNV 235
Query: 230 DHLWDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSS 289
W F++++L G ++ +CPV+P ++ + + +I + + + N
Sbjct: 236 SQGWGVFTIYILTRGGDVFSVCPVMPANAMIPQDVLKQI----RLILTKKEDDADAENHR 291
Query: 290 LAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSS--VSLQGP 332
+ W+ E A D + LFDSS VS++ P
Sbjct: 292 RNVHWITKLLGEAALAN-DLSTSFVISEGSSELFDSSDYVSVRRP 335
>sp|A4RFH6|EIF3D_MAGO7 Eukaryotic translation initiation factor 3 subunit D OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=MGG_00341 PE=3 SV=1
Length = 573
Score = 40.0 bits (92), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 280 VNSLAVRNSSLAISWL-EATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGP------ 332
VN + + N S + E F A+ET +PPA KA+ + FD S + +GP
Sbjct: 344 VNQVVIENESQKVDMEHENPFYNAAEET----EPPASKAYKYRKFDLSTNDEGPVYLVVR 399
Query: 333 -----LRKICHGGEDESLAVRG-------AECEGRAVSFLYNLVSKDSIVVTS 373
++K + GED+ L VR A+ G A+ + LVS+ VV +
Sbjct: 400 TELDAVQKNSNNGEDQFLTVRALNEFDNKAQGSGGALDWRSKLVSQRGAVVAT 452
>sp|P98161|PKD1_HUMAN Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3
Length = 4303
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 242 FSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPE 301
+ G+ C VP GS + + ++ DA TF +R N+S A+SW+ AT+
Sbjct: 1829 LATGTNVSWCWAVPGGSSKRGPHVTMVFPDAGTFSIR-------LNASNAVSWVSATYNL 1881
Query: 302 VAQETI 307
A+E I
Sbjct: 1882 TAEEPI 1887
>sp|B1VZ57|LEU3_STRGG 3-isopropylmalate dehydrogenase OS=Streptomyces griseus subsp.
griseus (strain JCM 4626 / NBRC 13350) GN=leuB PE=3 SV=1
Length = 347
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 532 LSDSFGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISK-- 589
+S S + I G QE V +K N +LP + E K DLGA++ T D +
Sbjct: 1 MSRSIDLAVIPGDGIGQEVVAQGLKVLNAVLPQDVKLETKEYDLGAQRWHRTGDTLPDAE 60
Query: 590 -ELLSGPKVILL 600
E L G ILL
Sbjct: 61 LEALKGHDAILL 72
>sp|Q9YW39|NTP1_MSEPV Nucleoside triphosphatase I OS=Melanoplus sanguinipes
entomopoxvirus GN=NPH1 PE=3 SV=1
Length = 647
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 614 SIEGRSTLHQYFNLFQENYVEYAHKVR--------------KLYLNHIKLVLFTS 654
S EG STL YFN+F +YVEY+ K LY N IK+ +F++
Sbjct: 399 SFEGISTLKIYFNIFNISYVEYSSKTESTRDYNIDIFNKYDNLYGNKIKVCIFSA 453
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,588,516
Number of Sequences: 539616
Number of extensions: 11254645
Number of successful extensions: 23664
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 23652
Number of HSP's gapped (non-prelim): 18
length of query: 691
length of database: 191,569,459
effective HSP length: 124
effective length of query: 567
effective length of database: 124,657,075
effective search space: 70680561525
effective search space used: 70680561525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)