Query 005546
Match_columns 691
No_of_seqs 169 out of 189
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 01:10:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4460 Nuclear pore complex, 100.0 1.5E-90 3.3E-95 745.8 29.1 587 1-666 1-606 (741)
2 PF10168 Nup88: Nuclear pore c 100.0 6.1E-87 1.3E-91 771.4 52.0 523 24-665 2-582 (717)
3 KOG0645 WD40 repeat protein [G 96.0 0.37 8E-06 51.1 16.6 75 105-194 105-180 (312)
4 PTZ00421 coronin; Provisional 95.9 0.75 1.6E-05 53.0 20.9 162 52-252 32-197 (493)
5 KOG0291 WD40-repeat-containing 95.1 1 2.3E-05 53.3 17.8 73 165-254 147-220 (893)
6 KOG1274 WD40 repeat protein [G 94.9 0.86 1.9E-05 54.9 17.0 119 52-194 98-218 (933)
7 KOG2096 WD40 repeat protein [G 94.8 0.36 7.9E-06 52.1 12.2 112 49-195 196-309 (420)
8 cd00200 WD40 WD40 domain, foun 94.7 3.3 7.2E-05 40.2 18.2 111 106-251 94-205 (289)
9 cd00200 WD40 WD40 domain, foun 93.8 2.7 5.8E-05 40.9 15.5 110 106-251 10-121 (289)
10 KOG2048 WD40 repeat protein [G 93.7 1.2 2.7E-05 52.0 14.5 71 107-194 477-548 (691)
11 PTZ00420 coronin; Provisional 92.7 12 0.00026 44.2 20.9 161 54-252 32-196 (568)
12 PF12657 TFIIIC_delta: Transcr 91.9 0.81 1.8E-05 45.2 8.8 86 109-195 8-122 (173)
13 PF15492 Nbas_N: Neuroblastoma 91.4 4.3 9.4E-05 43.4 13.8 115 110-247 2-121 (282)
14 KOG0302 Ribosome Assembly prot 91.1 2.1 4.5E-05 47.4 11.3 80 105-198 302-382 (440)
15 KOG0643 Translation initiation 90.8 11 0.00023 40.4 15.9 128 54-195 35-178 (327)
16 KOG0291 WD40-repeat-containing 90.7 8 0.00017 46.3 16.3 122 92-250 424-547 (893)
17 KOG0772 Uncharacterized conser 90.6 0.6 1.3E-05 53.2 6.9 105 94-206 205-310 (641)
18 PF00400 WD40: WD domain, G-be 90.4 1.1 2.4E-05 32.3 6.1 31 161-192 9-39 (39)
19 PTZ00421 coronin; Provisional 90.3 22 0.00048 41.2 19.6 81 107-204 170-254 (493)
20 KOG0264 Nucleosome remodeling 89.4 5.9 0.00013 44.6 13.3 152 62-245 240-396 (422)
21 PF04762 IKI3: IKI3 family; I 88.1 11 0.00024 47.0 16.0 136 105-258 304-461 (928)
22 PLN00181 protein SPA1-RELATED; 88.1 10 0.00022 46.1 15.6 80 106-195 484-564 (793)
23 KOG1446 Histone H3 (Lys4) meth 88.1 17 0.00036 39.5 15.1 122 51-195 141-263 (311)
24 KOG0266 WD40 repeat-containing 88.0 9.3 0.0002 43.5 14.3 111 105-249 203-314 (456)
25 KOG0272 U4/U6 small nuclear ri 87.8 2.3 4.9E-05 47.6 8.7 105 107-229 177-283 (459)
26 KOG0289 mRNA splicing factor [ 87.8 44 0.00095 38.0 18.5 136 52-230 305-443 (506)
27 KOG0273 Beta-transducin family 87.3 18 0.00039 41.3 15.4 74 106-195 360-441 (524)
28 PRK11028 6-phosphogluconolacto 86.9 47 0.001 35.4 19.8 116 106-250 80-202 (330)
29 KOG0973 Histone transcription 86.5 11 0.00025 46.3 14.3 126 107-266 221-369 (942)
30 PF10282 Lactonase: Lactonase, 86.5 54 0.0012 35.7 20.6 124 105-250 86-219 (345)
31 KOG0270 WD40 repeat-containing 86.1 29 0.00064 39.3 16.1 109 52-201 255-366 (463)
32 KOG0271 Notchless-like WD40 re 85.8 6.6 0.00014 43.7 10.9 103 52-195 336-440 (480)
33 KOG0308 Conserved WD40 repeat- 85.7 13 0.00027 44.0 13.5 150 52-250 129-282 (735)
34 KOG0315 G-protein beta subunit 85.6 22 0.00048 37.9 14.0 98 93-196 31-156 (311)
35 KOG0289 mRNA splicing factor [ 85.5 7.5 0.00016 43.9 11.2 116 103-250 301-416 (506)
36 KOG2055 WD40 repeat protein [G 85.4 5.4 0.00012 45.2 10.1 124 52-194 356-512 (514)
37 PLN00181 protein SPA1-RELATED; 85.0 68 0.0015 39.1 20.4 125 107-250 663-790 (793)
38 KOG0315 G-protein beta subunit 84.5 15 0.00032 39.1 12.2 88 94-195 158-246 (311)
39 KOG0277 Peroxisomal targeting 84.0 55 0.0012 35.1 16.1 39 162-201 146-184 (311)
40 PF07569 Hira: TUP1-like enhan 82.6 4.1 8.9E-05 42.0 7.4 73 176-254 22-96 (219)
41 KOG0319 WD40-repeat-containing 80.5 16 0.00035 43.6 11.9 147 65-249 25-175 (775)
42 PF14655 RAB3GAP2_N: Rab3 GTPa 80.0 9.2 0.0002 43.4 9.6 83 109-194 5-97 (415)
43 KOG0266 WD40 repeat-containing 79.4 23 0.00049 40.4 12.7 84 95-195 281-365 (456)
44 PRK11028 6-phosphogluconolacto 78.5 97 0.0021 33.0 19.7 83 106-197 175-261 (330)
45 KOG0650 WD40 repeat nucleolar 78.5 13 0.00028 43.6 10.1 127 106-253 522-680 (733)
46 KOG0264 Nucleosome remodeling 77.7 15 0.00031 41.5 10.0 118 109-250 181-300 (422)
47 PRK01742 tolB translocation pr 77.2 66 0.0014 36.1 15.5 73 107-197 205-281 (429)
48 KOG0647 mRNA export protein (c 77.2 37 0.0008 37.0 12.4 104 72-195 176-282 (347)
49 PF08662 eIF2A: Eukaryotic tra 77.1 18 0.00039 36.4 9.8 69 107-194 102-179 (194)
50 PF08662 eIF2A: Eukaryotic tra 76.8 31 0.00067 34.6 11.4 30 164-194 60-91 (194)
51 PTZ00420 coronin; Provisional 75.3 52 0.0011 39.0 14.3 34 162-195 73-106 (568)
52 TIGR03866 PQQ_ABC_repeats PQQ- 74.2 1E+02 0.0022 31.1 17.8 117 106-250 157-276 (300)
53 smart00320 WD40 WD40 repeats. 73.7 8.5 0.00018 24.8 4.6 28 164-192 13-40 (40)
54 KOG1407 WD40 repeat protein [F 73.6 11 0.00025 40.1 7.5 83 107-206 22-105 (313)
55 KOG1036 Mitotic spindle checkp 73.6 14 0.0003 40.2 8.1 76 101-197 10-86 (323)
56 PRK05137 tolB translocation pr 73.5 1.4E+02 0.003 33.5 16.8 70 107-194 203-276 (435)
57 TIGR03866 PQQ_ABC_repeats PQQ- 73.5 1.1E+02 0.0023 30.9 18.0 115 107-250 116-234 (300)
58 KOG2445 Nuclear pore complex c 73.2 1.5E+02 0.0033 32.6 18.2 116 50-194 23-144 (361)
59 KOG1445 Tumor-specific antigen 72.9 13 0.00028 43.9 8.2 33 163-195 677-709 (1012)
60 PF04841 Vps16_N: Vps16, N-ter 72.8 40 0.00086 38.1 12.2 114 109-252 32-154 (410)
61 KOG0318 WD40 repeat stress pro 72.2 58 0.0013 37.9 13.0 74 105-195 487-561 (603)
62 KOG1274 WD40 repeat protein [G 71.5 51 0.0011 40.5 12.9 75 103-195 94-169 (933)
63 KOG0272 U4/U6 small nuclear ri 71.1 25 0.00055 39.6 9.7 109 56-194 309-418 (459)
64 KOG0639 Transducin-like enhanc 70.9 27 0.00059 40.3 10.0 167 66-258 434-627 (705)
65 KOG0647 mRNA export protein (c 69.9 52 0.0011 35.9 11.4 112 99-218 22-163 (347)
66 KOG0318 WD40 repeat stress pro 69.8 2.3E+02 0.005 33.3 17.1 104 61-203 211-315 (603)
67 TIGR02658 TTQ_MADH_Hv methylam 69.6 1.9E+02 0.0041 32.2 16.7 75 51-136 48-138 (352)
68 KOG1408 WD40 repeat protein [F 68.6 20 0.00043 43.0 8.6 75 107-195 326-411 (1080)
69 KOG0771 Prolactin regulatory e 67.7 2.2E+02 0.0048 32.2 16.8 188 51-263 145-373 (398)
70 KOG0294 WD40 repeat-containing 66.3 1.3E+02 0.0028 33.2 13.5 91 107-198 170-285 (362)
71 KOG0290 Conserved WD40 repeat- 66.0 20 0.00044 38.9 7.4 72 110-197 247-321 (364)
72 KOG2445 Nuclear pore complex c 65.9 70 0.0015 35.1 11.4 118 108-246 16-137 (361)
73 KOG0640 mRNA cleavage stimulat 64.9 31 0.00067 37.8 8.6 115 94-244 209-324 (430)
74 KOG1963 WD40 repeat protein [G 64.5 1.4E+02 0.003 36.6 14.7 81 93-194 242-322 (792)
75 KOG0286 G-protein beta subunit 63.9 2.3E+02 0.005 31.1 15.1 129 51-229 66-196 (343)
76 KOG0284 Polyadenylation factor 63.7 34 0.00075 38.5 8.9 100 55-194 195-294 (464)
77 KOG0641 WD40 repeat protein [G 63.3 2.1E+02 0.0045 30.3 18.4 177 56-253 38-272 (350)
78 PF10282 Lactonase: Lactonase, 62.4 2.4E+02 0.0051 30.7 22.0 124 106-251 144-272 (345)
79 KOG0279 G protein beta subunit 62.2 1.3E+02 0.0027 32.7 12.4 122 51-195 193-314 (315)
80 PRK03629 tolB translocation pr 61.1 2.8E+02 0.0061 31.2 17.1 70 107-194 200-275 (429)
81 KOG0284 Polyadenylation factor 61.0 14 0.00029 41.6 5.2 71 107-194 266-337 (464)
82 KOG0307 Vesicle coat complex C 61.0 26 0.00056 43.7 8.0 120 51-207 127-252 (1049)
83 PF04762 IKI3: IKI3 family; I 60.7 1.8E+02 0.0039 36.6 15.5 157 52-250 211-376 (928)
84 KOG0646 WD40 repeat protein [G 60.5 92 0.002 35.7 11.6 118 107-250 125-244 (476)
85 KOG4328 WD40 protein [Function 60.1 52 0.0011 37.6 9.6 96 73-194 302-399 (498)
86 KOG0973 Histone transcription 60.0 54 0.0012 40.7 10.4 82 105-195 69-160 (942)
87 KOG1036 Mitotic spindle checkp 59.7 1.8E+02 0.0038 32.0 13.0 87 103-195 175-263 (323)
88 KOG0293 WD40 repeat-containing 59.4 1.3E+02 0.0028 34.3 12.3 82 95-195 217-300 (519)
89 KOG2106 Uncharacterized conser 59.0 1.1E+02 0.0024 35.7 11.9 122 107-253 156-296 (626)
90 KOG2110 Uncharacterized conser 58.6 1.9E+02 0.0042 32.4 13.3 74 106-195 174-249 (391)
91 KOG2048 WD40 repeat protein [G 58.0 1.4E+02 0.003 35.8 12.8 76 105-195 110-185 (691)
92 KOG0645 WD40 repeat protein [G 56.7 91 0.002 33.7 10.2 74 107-195 63-136 (312)
93 PF04053 Coatomer_WDAD: Coatom 56.3 1.1E+02 0.0023 35.2 11.7 74 94-194 24-98 (443)
94 KOG4283 Transcription-coupled 55.8 76 0.0017 34.7 9.5 85 107-194 45-132 (397)
95 KOG0263 Transcription initiati 54.9 26 0.00057 42.0 6.5 70 106-195 578-650 (707)
96 KOG1007 WD repeat protein TSSC 54.7 28 0.00061 37.8 6.1 84 106-198 64-156 (370)
97 PRK02889 tolB translocation pr 54.2 1.2E+02 0.0025 34.2 11.5 74 107-198 197-274 (427)
98 PRK03629 tolB translocation pr 52.7 3.8E+02 0.0083 30.2 16.9 72 108-198 245-321 (429)
99 KOG0295 WD40 repeat-containing 52.6 1.7E+02 0.0038 32.8 11.8 72 107-195 237-323 (406)
100 KOG0305 Anaphase promoting com 51.4 38 0.00082 39.3 7.0 72 107-195 303-377 (484)
101 KOG0295 WD40 repeat-containing 50.7 1.8E+02 0.0039 32.7 11.5 71 107-195 293-365 (406)
102 KOG0283 WD40 repeat-containing 50.0 2.4E+02 0.0052 34.4 13.3 78 107-194 453-532 (712)
103 KOG4328 WD40 protein [Function 49.9 96 0.0021 35.6 9.6 125 107-248 188-315 (498)
104 PRK04792 tolB translocation pr 49.4 4E+02 0.0087 30.3 14.9 70 107-194 219-292 (448)
105 KOG0650 WD40 repeat nucleolar 48.9 97 0.0021 36.8 9.6 69 107-193 402-471 (733)
106 KOG4497 Uncharacterized conser 48.8 77 0.0017 35.1 8.4 60 53-136 374-433 (447)
107 KOG0305 Anaphase promoting com 47.9 1.4E+02 0.003 34.8 10.8 72 106-195 388-462 (484)
108 PF12894 Apc4_WD40: Anaphase-p 47.7 48 0.001 26.1 5.0 32 162-194 10-41 (47)
109 PF10214 Rrn6: RNA polymerase 47.4 1.6E+02 0.0036 36.0 12.0 86 105-193 79-175 (765)
110 KOG4227 WD40 repeat protein [G 47.4 1.3E+02 0.0027 34.2 9.8 88 106-194 57-179 (609)
111 KOG1354 Serine/threonine prote 47.2 59 0.0013 36.2 7.2 91 107-200 27-122 (433)
112 KOG2110 Uncharacterized conser 46.8 1.5E+02 0.0033 33.2 10.3 30 106-135 219-249 (391)
113 KOG0275 Conserved WD40 repeat- 46.2 89 0.0019 34.5 8.3 30 165-195 350-379 (508)
114 KOG2315 Predicted translation 45.9 63 0.0014 37.8 7.5 66 110-194 316-390 (566)
115 KOG0296 Angio-associated migra 45.8 4.9E+02 0.011 29.4 15.2 32 162-195 326-357 (399)
116 KOG0271 Notchless-like WD40 re 45.8 1.7E+02 0.0036 33.2 10.4 65 121-195 82-146 (480)
117 PF12894 Apc4_WD40: Anaphase-p 45.7 56 0.0012 25.7 5.1 32 103-134 9-41 (47)
118 PF04841 Vps16_N: Vps16, N-ter 45.1 1.1E+02 0.0023 34.7 9.3 69 107-194 218-287 (410)
119 KOG1273 WD40 repeat protein [G 43.8 93 0.002 34.3 8.0 81 108-208 26-107 (405)
120 KOG0263 Transcription initiati 43.8 3.1E+02 0.0068 33.3 12.9 94 107-230 495-588 (707)
121 KOG0293 WD40 repeat-containing 43.7 1.4E+02 0.003 34.1 9.5 31 106-136 396-427 (519)
122 TIGR02658 TTQ_MADH_Hv methylam 43.6 3.3E+02 0.0072 30.4 12.6 59 61-134 12-85 (352)
123 KOG2111 Uncharacterized conser 42.7 5E+02 0.011 28.8 13.2 127 105-250 181-319 (346)
124 KOG2314 Translation initiation 42.6 5.7E+02 0.012 30.5 14.3 79 106-201 392-485 (698)
125 KOG0279 G protein beta subunit 42.6 4.9E+02 0.011 28.5 16.4 82 95-194 98-180 (315)
126 KOG0269 WD40 repeat-containing 42.3 73 0.0016 38.6 7.5 91 94-196 30-120 (839)
127 KOG0772 Uncharacterized conser 41.4 2E+02 0.0043 33.8 10.4 113 55-200 284-399 (641)
128 KOG4283 Transcription-coupled 41.3 36 0.00079 37.0 4.5 39 158-196 183-221 (397)
129 KOG0282 mRNA splicing factor [ 41.0 49 0.0011 38.0 5.7 68 109-192 436-503 (503)
130 KOG0277 Peroxisomal targeting 40.6 1.9E+02 0.0042 31.2 9.5 109 117-256 29-138 (311)
131 KOG0273 Beta-transducin family 40.5 2.4E+02 0.0052 32.7 10.9 71 106-194 453-523 (524)
132 KOG0319 WD40-repeat-containing 40.4 90 0.0019 37.7 7.8 73 107-195 107-180 (775)
133 KOG1063 RNA polymerase II elon 40.2 2.5E+02 0.0053 34.0 11.2 124 105-251 572-697 (764)
134 KOG0303 Actin-binding protein 40.0 54 0.0012 37.0 5.7 78 107-195 83-163 (472)
135 KOG0278 Serine/threonine kinas 40.0 82 0.0018 33.8 6.7 110 108-238 103-215 (334)
136 KOG0270 WD40 repeat-containing 39.9 2.2E+02 0.0047 32.7 10.4 72 163-251 286-358 (463)
137 KOG0278 Serine/threonine kinas 35.7 3.7E+02 0.008 29.1 10.7 84 95-195 215-298 (334)
138 KOG1332 Vesicle coat complex C 35.6 2.2E+02 0.0048 30.5 9.1 119 106-251 12-132 (299)
139 PF04053 Coatomer_WDAD: Coatom 35.5 73 0.0016 36.5 6.1 27 108-134 147-173 (443)
140 PRK04922 tolB translocation pr 35.1 3E+02 0.0065 30.9 10.9 69 108-194 206-280 (433)
141 KOG1587 Cytoplasmic dynein int 34.5 6.1E+02 0.013 30.2 13.5 129 107-251 244-376 (555)
142 PRK13616 lipoprotein LpqB; Pro 33.5 1.7E+02 0.0038 34.8 9.0 83 106-200 448-531 (591)
143 KOG0641 WD40 repeat protein [G 32.8 6.3E+02 0.014 26.9 15.6 91 107-207 34-135 (350)
144 KOG2111 Uncharacterized conser 32.8 3.3E+02 0.0071 30.2 10.0 32 106-137 227-259 (346)
145 KOG1310 WD40 repeat protein [G 32.5 3E+02 0.0064 32.7 10.1 115 106-250 51-175 (758)
146 COG5354 Uncharacterized protei 32.4 5.7E+02 0.012 30.1 12.2 71 107-194 175-263 (561)
147 KOG0310 Conserved WD40 repeat- 32.2 8.1E+02 0.018 28.6 13.3 109 59-195 77-185 (487)
148 KOG1354 Serine/threonine prote 32.0 1E+02 0.0023 34.3 6.2 118 63-196 227-361 (433)
149 KOG2055 WD40 repeat protein [G 31.8 7E+02 0.015 29.1 12.7 126 107-251 215-372 (514)
150 PRK00178 tolB translocation pr 31.6 5.2E+02 0.011 28.7 12.1 70 107-194 200-275 (430)
151 KOG1539 WD repeat protein [Gen 31.5 2.3E+02 0.0049 35.0 9.3 124 56-249 499-633 (910)
152 PLN02919 haloacid dehalogenase 31.2 1.2E+03 0.027 29.8 18.7 131 52-195 626-771 (1057)
153 KOG3630 Nuclear pore complex, 31.0 2E+02 0.0042 36.9 8.8 210 22-263 16-238 (1405)
154 KOG2919 Guanine nucleotide-bin 30.9 2.4E+02 0.0051 31.5 8.6 108 108-230 52-169 (406)
155 KOG0640 mRNA cleavage stimulat 30.5 2.2E+02 0.0047 31.6 8.2 85 105-195 112-203 (430)
156 KOG0265 U5 snRNP-specific prot 30.4 2.7E+02 0.0059 30.6 8.8 75 105-195 47-121 (338)
157 KOG4378 Nuclear protein COP1 [ 29.9 2.4E+02 0.0052 33.0 8.7 73 106-194 122-195 (673)
158 KOG0306 WD40-repeat-containing 29.6 1.1E+02 0.0024 37.1 6.4 88 162-256 319-422 (888)
159 PRK01742 tolB translocation pr 28.8 7.3E+02 0.016 27.8 12.7 72 109-198 251-326 (429)
160 KOG4497 Uncharacterized conser 27.9 2E+02 0.0044 32.0 7.5 103 111-244 14-124 (447)
161 KOG4640 Anaphase-promoting com 27.4 2.4E+02 0.0053 33.7 8.5 72 106-196 21-94 (665)
162 PF11768 DUF3312: Protein of u 27.4 2.8E+02 0.006 32.8 8.9 32 164-196 300-331 (545)
163 KOG2919 Guanine nucleotide-bin 27.1 54 0.0012 36.2 3.0 31 165-196 51-81 (406)
164 PRK02889 tolB translocation pr 27.1 9.3E+02 0.02 27.0 15.9 74 108-199 242-319 (427)
165 PF03791 KNOX2: KNOX2 domain ; 26.9 58 0.0012 26.5 2.5 42 625-666 11-52 (52)
166 TIGR02800 propeller_TolB tol-p 26.9 5.4E+02 0.012 28.1 11.0 69 108-194 192-266 (417)
167 KOG1446 Histone H3 (Lys4) meth 26.4 9E+02 0.02 26.7 17.4 113 111-250 146-259 (311)
168 PRK04922 tolB translocation pr 26.1 9.6E+02 0.021 26.9 14.8 26 109-134 251-280 (433)
169 KOG1963 WD40 repeat protein [G 25.4 1.4E+03 0.03 28.5 14.8 72 109-195 164-236 (792)
170 KOG2096 WD40 repeat protein [G 25.3 1.8E+02 0.0039 32.2 6.6 77 106-195 87-164 (420)
171 KOG1587 Cytoplasmic dynein int 25.3 4E+02 0.0087 31.7 10.0 123 61-204 359-482 (555)
172 KOG1407 WD40 repeat protein [F 25.2 9.1E+02 0.02 26.3 16.7 155 52-229 77-261 (313)
173 KOG3914 WD repeat protein WDR4 24.5 1.9E+02 0.0042 32.6 6.8 81 107-207 153-234 (390)
174 KOG2321 WD40 repeat protein [G 24.2 1.3E+03 0.028 27.8 14.9 111 61-195 145-259 (703)
175 COG2319 FOG: WD40 repeat [Gene 24.0 4.9E+02 0.011 26.2 9.4 33 162-194 197-229 (466)
176 KOG0286 G-protein beta subunit 23.1 1E+03 0.023 26.2 15.4 35 162-197 228-262 (343)
177 PF11715 Nup160: Nucleoporin N 23.0 1.2E+02 0.0026 35.1 5.2 32 164-195 215-249 (547)
178 PF10647 Gmad1: Lipoprotein Lp 22.5 5.6E+02 0.012 26.7 9.7 69 107-185 113-185 (253)
179 KOG1273 WD40 repeat protein [G 22.2 1.1E+03 0.025 26.3 12.7 30 164-194 197-226 (405)
180 KOG1517 Guanine nucleotide bin 20.6 6.6E+02 0.014 32.3 10.6 68 176-255 1221-1289(1387)
181 KOG0321 WD40 repeat-containing 20.5 2.3E+02 0.0051 33.9 6.6 30 165-195 102-131 (720)
182 PF02239 Cytochrom_D1: Cytochr 20.4 1.2E+03 0.026 25.9 18.2 115 110-251 41-156 (369)
183 PRK02888 nitrous-oxide reducta 20.4 2.7E+02 0.0059 33.5 7.3 86 103-195 318-405 (635)
184 PF08596 Lgl_C: Lethal giant l 20.2 2.5E+02 0.0054 31.7 6.8 61 119-194 228-290 (395)
No 1
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-90 Score=745.79 Aligned_cols=587 Identities=25% Similarity=0.234 Sum_probs=487.4
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCcCCCCCCCCCCCCCceEEEEeCCCeEEEEECCcceEEEEEee
Q 005546 1 MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVR 80 (691)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~Wl~l~~hpiF~~~~~~~~~~~~~~~~~rnlla~~g~~~Lfvw~~n~~~l~~~~lR 80 (691)
|.|||++.++.+++|++||||+.++|++..+||.|........-......-+||+++|+| +++|+|++.++||++++||
T Consensus 1 m~~~~~~~~d~~~~~~~p~~~~~lr~Vl~~~~ptea~~p~s~~lP~V~~l~trN~~~~~g-D~lf~Wd~~ds~Llv~~lR 79 (741)
T KOG4460|consen 1 MAAAEGPVGDGELWQWLPNHFLRLREVLKNQSPTEAEKPASSSLPSVPPLLTRNVVFGLG-DELFLWDGEDSSLLVVRLR 79 (741)
T ss_pred CCcccCCCCcchhhhcCCCccccHhHHhhhcCchhhcccccCCCCCCccccccchhcccC-CEEEEEecCcceEEEEEec
Confidence 999999999999999999999999999999999998774311111223335999999997 6999999999999999999
Q ss_pred cCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCC---C-C-CCceEEEEEEecce
Q 005546 81 LGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCS---S-D-NKTIICRTVSVGSQ 155 (691)
Q Consensus 81 ~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~---~-d-~~~i~crt~~v~~~ 155 (691)
.. +++.++.+..+|++|.++.++.|+|.++.+|++|+++||+|.++|+||+||+|||. + | ++.+.||++.||.+
T Consensus 80 ~~-~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~ 158 (741)
T KOG4460|consen 80 GP-SGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER 158 (741)
T ss_pred cC-CCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce
Confidence 73 34444566788999999999999999999999999999999999999999999964 2 2 45789999999987
Q ss_pred eeeecCCccceEEEEEecCC--CCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCC
Q 005546 156 IYFSSSNVIRTLQVSWHPYS--DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLW 233 (691)
Q Consensus 156 ~~~~s~~~~~I~qv~WHP~s--ds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W 233 (691)
+|++++.+.++||+|||.| |+||++|++||+||+||++.+.+ .++++..+||+..+.... +||
T Consensus 159 -~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te-----lylqpgepgRS~tn~Si~----sFG----- 223 (741)
T KOG4460|consen 159 -FFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE-----LYLQPGEPGRSPTNVSIL----SFG----- 223 (741)
T ss_pred -eeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch-----hhccCCCcCCCCccceee----ccC-----
Confidence 6888899999999999999 99999999999999999986443 477777788887654322 566
Q ss_pred CceEEEEEecCCcEEEEcccCCCCCCCChhHHHHHHhhhccccccccchhhhhchHHHHHHHHhhccccccccCCCCCCC
Q 005546 234 DRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDPP 313 (691)
Q Consensus 234 ~~~TLyiL~~~GDIYalcP~lP~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~a~~Ql~Wl~~l~~q~~~~~~~~~~~~ 313 (691)
+|.||.+||..|++..+.++.+- |++...+. +.+.-+..|+....+|++..+.-+..++. +.+..
T Consensus 224 ----------e~~~~~l~~~~a~~~V~~~Esv~---Nd~~~l~~-S~ktL~~~nSs~k~E~iE~p~~~L~EnG~-~~NIy 288 (741)
T KOG4460|consen 224 ----------EEESLVLNKGRAYTAVLGEEAVA---NDFGPLAA-SPKTLFGQNSSGKDEVVEYPLYILYENGE-TFNIY 288 (741)
T ss_pred ----------CcceeeeccCcccccccCchhhc---cCcccccc-CccceeeecccccceeEecceeeeeccCc-ceeEE
Confidence 59999999999999999888775 55444443 44444667777889999999998888765 55777
Q ss_pred ccccccCccCCCcceeeCCeeecCCCCCCchhhhhccccccccceeEEeccCCCeEEEEEecCCeEEEEeecCCCccccc
Q 005546 314 ALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVWT 393 (691)
Q Consensus 314 ~v~~~p~~~~~~~p~LQGPf~i~~p~~ed~y~~~~~~~c~~~A~~il~~~~~~~~iL~iA~s~G~V~i~l~~~ev~~~W~ 393 (691)
.+.++++ +...+||||++|. |.++|+|+. ++| .+|++ ++.++||+|||++|++|||++.++.++.|.
T Consensus 289 i~~~~~~---~~~~~LQGPl~~~-p~aeDnyg~---~~C-----aL~~l-pS~p~ilViA~S~G~L~h~~L~e~e~~~~h 355 (741)
T KOG4460|consen 289 ISLLHSP---GNIGKLQGPLPMH-PAAEDNYGY---DAC-----ALLCL-PSVPNILVIATSSGMLYHCVLLEGEEEDDH 355 (741)
T ss_pred EEEccCc---chhhhhcCCccCC-cccccccch---hhh-----eeEee-cCCCCeEEEEecCCceeeeeeecccccccc
Confidence 7777776 4468999999999 899999983 555 56666 679999999999999999999999999999
Q ss_pred cCCCCCcccCccccccccceeeccccCCCCccccCCCCCccccCCCCCCceeeeEeeccCCCCCCCCceeEEeeCCCCCc
Q 005546 394 VNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQE 473 (691)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~a~i~Es~~~~~~~~~~~~p~~~t~~~~~~p~Ll~le~vdl~l~~~~~~~~~~~l~~Dp~~~~ 473 (691)
+++..+.++.++..+.+++|+||+.-++.++.+.++|. ....+|||.|+||+.++-
T Consensus 356 S~N~s~ds~~~~~p~~yV~~~~E~~i~l~l~~~~~~p~------------------------d~~~~cP~~L~Rd~~~~L 411 (741)
T KOG4460|consen 356 SSNKSWDSRIDLIPSLYVFECVELELALKLASGEDDPF------------------------DSDFSCPVKLHRDPKCPL 411 (741)
T ss_pred ccccchhhhhhcchhhHHHHHHhhhhhhhhccCCCCCc------------------------cccCCCCchhhhcccccc
Confidence 98887777667888899999999944444545444443 335678999999999999
Q ss_pred eEEEEecCceeEEEeeccc----cccc-cCCCCc--cC---CCCceEEEEecCCCCCCCCCceeeEEEccccccceeEEE
Q 005546 474 RIYIVHDGGIDSVVLHFLP----FTSQ-TRGKDE--TN---RSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVG 543 (691)
Q Consensus 474 ~~~vtH~~GVh~VsL~Wv~----~le~-e~g~d~--~~---~~~~ve~ll~t~~~~~~~~~pl~G~~vi~D~lg~~~Ll~ 543 (691)
||||+|++|||+|.++|++ +|+. |.++|- .+ .+|++++++||+...+...+||.||++++|++|| |+||
T Consensus 412 ry~~~heaGvh~v~~S~i~El~~~L~s~e~D~d~L~~l~~~S~~~~e~iLcTk~~~c~~V~pi~Gf~~L~d~~G~-~IV~ 490 (741)
T KOG4460|consen 412 RYHCTHEAGVHSVGLSWIHELHKFLGSDEEDKDSLQELSTESKCFVEHILCTKPLPCRQVAPIRGFWILPDILGP-TIVC 490 (741)
T ss_pred cchhhhccceEeehhhhHHHHHHHhcCCCcchHHHHhhhhhhhhhhHHHhcCCCCcccccccccceeeccccCCc-eEEE
Confidence 9999999999999999999 4543 555553 11 2566999999999888888999999999999999 5999
Q ss_pred EecCCcEEEEEecccccccccccccccc--ccccccccCCCChHHHHHhHhcCCcccccCCCCCCCCcccCCChhhhHHH
Q 005546 544 VTSTQECVVIEMKTWNLLLPVQIDSEKK--SVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRSTL 621 (691)
Q Consensus 544 lts~~~~v~~~l~~~~~l~P~~~~~~~~--~~~~~~~~~~~~~~~i~k~ll~gp~~~~~p~~~~~~~~~~~~s~E~~~~L 621 (691)
+.++|||++ |++++|.+...++. +..+.|.+|.+..+.+.|++++|++--.-|.+.++.++.++ +.||+++|
T Consensus 491 vLsSGecI~-----w~Ll~~~h~~~~p~~~~~~d~Ev~eQE~~~~f~k~i~s~lqrsva~paL~~~~SsP~-~~E~~~lL 564 (741)
T KOG4460|consen 491 ILSSGECII-----WPLLSTVHPASPPLLCTREDVEVAEQETPDSFEKHIRSILQRSVANPALLKASSAPP-PEECLQLL 564 (741)
T ss_pred EecCCcEEE-----EeeeccccccCCcccCchhHhHHHhhhcCCcHHHHHHHhhhhhcCChhccccccCCC-cHHHHHHH
Confidence 999999997 55567776665544 23567777888889999999999998888888788888776 99999999
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHhhhhhhhhcccccccccccccc
Q 005546 622 HQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLCG 666 (691)
Q Consensus 622 ~~~~~~l~~~y~~~~~kv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (691)
.||+++|||+|++|||+||+||++||+++-.. +++||||+.-
T Consensus 565 ~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~---k~~QlQ~l~~ 606 (741)
T KOG4460|consen 565 SRATQVFREQYILKQDLVKEEIQRHVKLLCDQ---KKKQLQDLSY 606 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 99999999999999999999999999865443 7899999853
No 2
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=100.00 E-value=6.1e-87 Score=771.41 Aligned_cols=523 Identities=29% Similarity=0.411 Sum_probs=401.7
Q ss_pred CCcc-cCCCCcccccCcCCCCC-C-CCCCCCCceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEec
Q 005546 24 VEWV-PLQKHPVFSAPDAVRNG-G-GKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRA 100 (691)
Q Consensus 24 ~~Wl-~l~~hpiF~~~~~~~~~-~-~~~~~~~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~ 100 (691)
-+|+ .|++|+||++.+..... . .......|||++++| ++||+||++++|++++|||....++........|+++++
T Consensus 2 ~~~~~~L~~h~lF~~l~~~l~~~~~~~~~~~~rNLl~~~d-~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~ 80 (717)
T PF10168_consen 2 ETWRLWLPNHPLFKRLREGLSSSSKGSSERHTRNLLACRD-GDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPS 80 (717)
T ss_pred cchhhhCCCChhHHHhhccCCCCCcccccccceeeEEEeC-CEEEEEECCCCEEEEEeeccccccccCccccCcceeecC
Confidence 3798 99999999999653322 1 223345799999996 999999999999999999999754332111234566776
Q ss_pred CCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCC---CC--CCceEEEEEEecceeeeecCCccceEEEEEecCC
Q 005546 101 DVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCS---SD--NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS 175 (691)
Q Consensus 101 ~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~---~d--~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s 175 (691)
++ +.|+|++|++||+|++|||+|+++|+||+||+||++ ++ +..+.||+++||+. ||.+++++.|+||+|||+|
T Consensus 81 ~~-~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~-~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 81 NP-PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDER-FFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred CC-CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechh-hccCCCCceEEEEEEcCCC
Confidence 55 579999999999999999999999999999999964 33 35789999999987 6788999999999999998
Q ss_pred --CCEEEEEecCCeEEEEeccCCCCCCcEEEEcccC-------CCCCCCCC-CCCceEEEEecCC-------------CC
Q 005546 176 --DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPV-------EPGRYRNA-ASICPVDFSFGGD-------------HL 232 (691)
Q Consensus 176 --ds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~-------~~g~s~~~-s~~~avsf~FG~~-------------~~ 232 (691)
|+|||||||||+||+||++ +...|.|++.+.+. ..|+++.+ .|++||||||||. ..
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~-~~~~p~~v~~~~~~~~~~~~~~~~~~~~~slge~AV~FDfgP~~~~~~~~~~~~~~~~ 237 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDIS-DPQHPWQVLSLSPGEKSSSLSSRGRSFLASLGETAVDFDFGPLDTSPKTLTGQKSKQE 237 (717)
T ss_pred CCCCeEEEEecCCEEEEEecC-CCCCCeEEEEcccCcccccccCCCccccccchheeeecccccccccccccccccCCCC
Confidence 8999999999999999997 78999999998742 12333433 3899999999983 23
Q ss_pred CCceEEEEEecCCcEEEEcccCCCCCCCChhHHHHHHhhhccccccccchhhhhchHHHHHHHHhhccccccccCCCCCC
Q 005546 233 WDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDP 312 (691)
Q Consensus 233 W~~~TLyiL~~~GDIYalcP~lP~~~~~~~~~I~~L~~~~~~~~~~~~~~~~~~~a~~Ql~Wl~~l~~q~~~~~~~~~~~ 312 (691)
|-.|+||||++|||||.+|-.+- .
T Consensus 238 ~~~~p~~vL~~ng~v~~~~~~l~------------------------------------------------~-------- 261 (717)
T PF10168_consen 238 KIEWPIFVLRENGDVYLLYTSLQ------------------------------------------------D-------- 261 (717)
T ss_pred ceeccEEEEecCCCEEEEEEecc------------------------------------------------c--------
Confidence 45789999999999999985530 0
Q ss_pred CccccccCccCCCcceeeCCeeecCCCCCCchhhhhccccccccceeEEeccCCCeEEEEEecCCeEEEEeecCCCcccc
Q 005546 313 PALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVW 392 (691)
Q Consensus 313 ~~v~~~p~~~~~~~p~LQGPf~i~~p~~ed~y~~~~~~~c~~~A~~il~~~~~~~~iL~iA~s~G~V~i~l~~~ev~~~W 392 (691)
..+..+++||||+|+ |+++||||. +||+|+|++ +.|+||+||+++|++|||+.+++.. .|
T Consensus 262 ---------~~~~~~~~~gpl~~~-p~~~dnyg~--------d~c~i~~l~-~~p~~~via~~~G~l~h~i~l~~~~-~~ 321 (717)
T PF10168_consen 262 ---------ENSNLPKLQGPLPMQ-PPADDNYGL--------DACSILCLP-SLPPVLVIATSNGKLYHCILLEAEE-DE 321 (717)
T ss_pred ---------CccccceecCceecC-CCCcccCCC--------ceeeEEEec-CCCCEEEEEecCCeEEEEEEecccc-cc
Confidence 012457999999999 899999993 677999994 4789999999999999998765432 22
Q ss_pred ccCCCCCcccCccccccccceeeccccCCCCccccCCCCCccccCCCCCCceeeeEeeccCCCCC----------CCCce
Q 005546 393 TVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNT----------ESGSI 462 (691)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~a~i~Es~~~~~~~~~~~~p~~~t~~~~~~p~Ll~le~vdl~l~~~~----------~~~~~ 462 (691)
..... + .+..+...+|.|++||||||+|+... .++|+
T Consensus 322 ~~~~~-----~----------------------------~~~~~~~~~~~L~V~E~VeLel~l~~~~~~~~~~~~~~~cp 368 (717)
T PF10168_consen 322 DDSFN-----E----------------------------SDDQSLEEPPSLYVLETVELELGLSLASEDEESLELSYSCP 368 (717)
T ss_pred ccccc-----c----------------------------cccccccCCcceEEEEEEeeccccccCCCCCccccCCCCcc
Confidence 10000 0 00012336789999999999987754 25799
Q ss_pred eEEeeCCCCCceEEEEecCceeEEEeeccccc----cc-cCCCCc-----cCCCCceEEEEecCCCCCCCCCceeeEEEc
Q 005546 463 ITMSIDPLMQERIYIVHDGGIDSVVLHFLPFT----SQ-TRGKDE-----TNRSPSVHPVLNTCQGETSSPSPLCGFVSL 532 (691)
Q Consensus 463 ~~l~~Dp~~~~~~~vtH~~GVh~VsL~Wv~~l----e~-e~g~d~-----~~~~~~ve~ll~t~~~~~~~~~pl~G~~vi 532 (691)
|+|++||.+++||||+|++|||+|+|+|++.| +. ++++|. ..++|.|++|+||++..++.++||.||+++
T Consensus 369 I~L~~Dp~~~~ryy~~H~~GvH~V~L~wl~~L~~fl~~~~~~~dsl~~l~~~~~~~Ve~llcT~~~~~~~~~PV~G~~il 448 (717)
T PF10168_consen 369 IRLHRDPLNPDRYYCYHNAGVHSVTLPWLSALQEFLESDEEDKDSLQELASESPCIVEYLLCTKPLSSSAPNPVVGFAIL 448 (717)
T ss_pred eEEEecCCCCceEEEEecCccEEEEeccHHHHHHHhcccCCccchhhhhcccCCcceEEEeccCCCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999965 22 344442 223556999999999888788999999999
Q ss_pred cccccceeEEEEecCCcEEEEEecc-ccccccccccccccccccccc------cCCCChHHHHHhHhcCCcccccCCCCC
Q 005546 533 SDSFGYSWIVGVTSTQECVVIEMKT-WNLLLPVQIDSEKKSVDLGAK------KERDTPDIISKELLSGPKVILLPQASP 605 (691)
Q Consensus 533 ~D~lg~~~Ll~lts~~~~v~~~l~~-~~~l~P~~~~~~~~~~~~~~~------~~~~~~~~i~k~ll~gp~~~~~p~~~~ 605 (691)
+|++||. ||++|++|+|++++|.. .+++.|. ...+.......+. .....|+...|.||+++...++.. .+
T Consensus 449 ~D~lg~s-ll~lts~~e~v~l~L~~~~~~~~~p-~~~~~~~~~~~~~~~~~l~~~~~sF~~~Ik~lL~r~~~qPill-~s 525 (717)
T PF10168_consen 449 SDVLGYS-LLALTSSGECVVLPLVIDLRLLSPP-LLCEPSDSDSTESPLKPLAESPPSFEKHIKSLLQRSSSQPILL-KS 525 (717)
T ss_pred cCCCCce-EEEEccCCcEEEEEcccccccCCCc-hhhcCCCCCcccccccccccccchHHHHHHHHhcCCCCCCeec-CC
Confidence 9998888 89999999999999864 4444432 2222111111111 112345666688887654332232 24
Q ss_pred CCCcccCCChhhhHHHHHHHHHHHHhhHhHHHHHHHHHHhhhhhhhhccccccccccccc
Q 005546 606 NLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLC 665 (691)
Q Consensus 606 ~~~~~~~~s~E~~~~L~~~~~~l~~~y~~~~~kv~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (691)
..|...+.+.||+++|+||+++|||+|++++|+||+||++|++++ +.. +++|+++++
T Consensus 526 ~~k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~L--k~~-~e~Ql~~L~ 582 (717)
T PF10168_consen 526 SDKSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLL--KQQ-KEQQLKELQ 582 (717)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHH
Confidence 467888899999999999999999999999999999999999743 333 667776665
No 3
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=95.96 E-value=0.37 Score=51.09 Aligned_cols=75 Identities=19% Similarity=0.303 Sum_probs=56.2
Q ss_pred ceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 105 NFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
.-||+.+..|++|+|||-.+. +.|=|.++- +++++.|-.+ |. ...-.|++|.|||-.| -|+--.
T Consensus 105 EnEVK~Vaws~sG~~LATCSRDKSVWiWe~d------eddEfec~aV-L~-------~HtqDVK~V~WHPt~d-lL~S~S 169 (312)
T KOG0645|consen 105 ENEVKCVAWSASGNYLATCSRDKSVWIWEID------EDDEFECIAV-LQ-------EHTQDVKHVIWHPTED-LLFSCS 169 (312)
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEEec------CCCcEEEEee-ec-------cccccccEEEEcCCcc-eeEEec
Confidence 358999999999999999875 578888775 2446777555 22 2334799999999654 344455
Q ss_pred cCCeEEEEecc
Q 005546 184 SDSVFRLFNLA 194 (691)
Q Consensus 184 sDn~iRlydl~ 194 (691)
-||+||+|.-.
T Consensus 170 YDnTIk~~~~~ 180 (312)
T KOG0645|consen 170 YDNTIKVYRDE 180 (312)
T ss_pred cCCeEEEEeec
Confidence 69999999875
No 4
>PTZ00421 coronin; Provisional
Probab=95.93 E-value=0.75 Score=53.03 Aligned_cols=162 Identities=14% Similarity=0.141 Sum_probs=95.8
Q ss_pred CceEEEEeCCCeEEEEECCcceEEEEEe-ecCCCCCCccccCCCceEEecCCCCceeeeEEEeCC-CCCEEEEEec-CeE
Q 005546 52 PKNLVAWDGASRLYYWDQNAQCLHRISV-RLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINR-NGSALLLIGS-DGL 128 (691)
Q Consensus 52 ~rnlla~~g~~~Lfvw~~n~~~l~~~~l-R~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSp-sG~~LAl~G~-~~V 128 (691)
..|++++.+..-.+.|+..+... ++.+ +.+.. ...+.++.- . .-.|..+.+|| ++++||..+. ..|
T Consensus 32 ~~~~~~~n~~~~a~~w~~~gg~~-v~~~~~~G~~-------~~~~~~l~G--H-~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 32 CSNTIACNDRFIAVPWQQLGSTA-VLKHTDYGKL-------ASNPPILLG--Q-EGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred CCCcEeECCceEEEEEecCCceE-EeeccccccC-------CCCCceEeC--C-CCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 45788887655567787655432 2221 11110 112233432 2 34799999999 7888887765 577
Q ss_pred EEEEeCCCCCCCC-CCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcc
Q 005546 129 CVMYLYGRTCSSD-NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQ 207 (691)
Q Consensus 129 ~Vv~LP~~~~~~d-~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~ 207 (691)
.|-.++....... ...+ ..+ ......|..+.|||.++..|+.-..|++||+||+... .+. ..+.
T Consensus 101 kIWdi~~~~~~~~~~~~l----~~L-------~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg--~~~--~~l~ 165 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPI----VHL-------QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG--KAV--EVIK 165 (493)
T ss_pred EEEecCCCccccccCcce----EEe-------cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--eEE--EEEc
Confidence 8888874311100 1111 111 1234579999999998888888899999999999742 222 2221
Q ss_pred cCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEcc
Q 005546 208 PVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (691)
Q Consensus 208 ~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalcP 252 (691)
. -...+.+++|.+. .-.|.....||-|...-+
T Consensus 166 ~---------h~~~V~sla~spd----G~lLatgs~Dg~IrIwD~ 197 (493)
T PTZ00421 166 C---------HSDQITSLEWNLD----GSLLCTTSKDKKLNIIDP 197 (493)
T ss_pred C---------CCCceEEEEEECC----CCEEEEecCCCEEEEEEC
Confidence 1 1234778888874 223455556787776654
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.06 E-value=1 Score=53.32 Aligned_cols=73 Identities=21% Similarity=0.357 Sum_probs=42.6
Q ss_pred ceEEEEEecCCCCEEEEE-ecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEec
Q 005546 165 RTLQVSWHPYSDTHLGIL-SSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS 243 (691)
Q Consensus 165 ~I~qv~WHP~sds~LvVL-TsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~ 243 (691)
.|..+.|-- |+-+.+. ..|-+.|+|.++. ... -..+.++. -...+|+.-||. +-+++|.+.+
T Consensus 147 di~si~Ws~--DSr~l~~gsrD~s~rl~~v~~-~k~-~~~~~l~g---------Hkd~VvacfF~~----~~~~l~tvsk 209 (893)
T KOG0291|consen 147 DITSIDWSD--DSRLLVTGSRDLSARLFGVDG-NKN-LFTYALNG---------HKDYVVACFFGA----NSLDLYTVSK 209 (893)
T ss_pred ceeEEEecc--CCceEEeccccceEEEEEecc-ccc-cceEeccC---------CCcceEEEEecc----CcceEEEEec
Confidence 455555521 4444444 6678889888863 221 11233321 123466666676 5789999999
Q ss_pred CCcEEEEcccC
Q 005546 244 DGSIYILCPVV 254 (691)
Q Consensus 244 ~GDIYalcP~l 254 (691)
||-++.----+
T Consensus 210 dG~l~~W~~~~ 220 (893)
T KOG0291|consen 210 DGALFVWTCDL 220 (893)
T ss_pred CceEEEEEecC
Confidence 99997654443
No 6
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=94.95 E-value=0.86 Score=54.91 Aligned_cols=119 Identities=14% Similarity=0.197 Sum_probs=78.5
Q ss_pred CceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEE-ecCeEEE
Q 005546 52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLI-GSDGLCV 130 (691)
Q Consensus 52 ~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~-G~~~V~V 130 (691)
|-+-+++.|++...+.-+.+-.+.++|..- .+..+++. ..+-+|.+|.++|+|.|||++ ++-.|.|
T Consensus 98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D----------~s~~~~lr---gh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDD----------SSQEKVLR---GHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred cceEEEEecCCcEEEeecCceeEEEEeccc----------cchheeec---ccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 667778888777777767665555555411 23455665 346789999999999999997 5567888
Q ss_pred EEeCCCC-CCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEecc
Q 005546 131 MYLYGRT-CSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 131 v~LP~~~-~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~ 194 (691)
..|-+.. ..+-+...+|.- | ..+..+-+++|||.++ +|++.-.||+|.+|+..
T Consensus 165 w~~~~~~~~~tl~~v~k~n~--------~--~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNE--------F--ILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRK 218 (933)
T ss_pred EEcccchhhhhcccCCcccc--------c--cccceeeeeeecCCCC-eEEeeccCCeEEEEccC
Confidence 8886443 111111111111 1 1133578999999875 56677788999999976
No 7
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=94.77 E-value=0.36 Score=52.14 Aligned_cols=112 Identities=16% Similarity=0.228 Sum_probs=73.4
Q ss_pred CCCCceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec-Ce
Q 005546 49 NGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DG 127 (691)
Q Consensus 49 ~~~~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~-~~ 127 (691)
+.+.+.++++.-++.|.+|+.+++.|-.+|-. . ..-....+||+|+|+|..|= -.
T Consensus 196 A~~~k~imsas~dt~i~lw~lkGq~L~~idtn----------------q--------~~n~~aavSP~GRFia~~gFTpD 251 (420)
T KOG2096|consen 196 AGNAKYIMSASLDTKICLWDLKGQLLQSIDTN----------------Q--------SSNYDAAVSPDGRFIAVSGFTPD 251 (420)
T ss_pred cCCceEEEEecCCCcEEEEecCCceeeeeccc----------------c--------ccccceeeCCCCcEEEEecCCCC
Confidence 34578899888899999999987655444421 1 12234579999999999985 46
Q ss_pred EEEEEeC-CCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 128 LCVMYLY-GRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 128 V~Vv~LP-~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
|-|-++= .+-+.+. +. .|.+.|- ...+.|..+.|.|.| .-.+....|+.+|+||++.
T Consensus 252 VkVwE~~f~kdG~fq--ev-~rvf~Lk-------GH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 252 VKVWEPIFTKDGTFQ--EV-KRVFSLK-------GHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ceEEEEEeccCcchh--hh-hhhheec-------cchhheeeeeeCCCc-ceeEEEecCCcEEEeeccc
Confidence 7776652 1112211 11 3445443 344566666666655 4567889999999999985
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.68 E-value=3.3 Score=40.23 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=70.6
Q ss_pred eeeeEEEeCCCCCEEEEEe-cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 106 FEVSRISINRNGSALLLIG-SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G-~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
..|..+..++++++++..+ ...|.+..+... .. ...+. .....|..+.|+|. +..+++-..
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~--~~~~~---------~~~~~i~~~~~~~~-~~~l~~~~~ 155 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETG------KC--LTTLR---------GHTDWVNSVAFSPD-GTFVASSSQ 155 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCc------EE--EEEec---------cCCCcEEEEEEcCc-CCEEEEEcC
Confidence 3688999999999999888 778888877511 11 11111 12346899999998 444444444
Q ss_pred CCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEc
Q 005546 185 DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC 251 (691)
Q Consensus 185 Dn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalc 251 (691)
|+.|++||+.. ..+.+.+..+ ...+.+++|.+. .-.+++...+|.|+..-
T Consensus 156 ~~~i~i~d~~~--~~~~~~~~~~-----------~~~i~~~~~~~~----~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 156 DGTIKLWDLRT--GKCVATLTGH-----------TGEVNSVAFSPD----GEKLLSSSSDGTIKLWD 205 (289)
T ss_pred CCcEEEEEccc--cccceeEecC-----------ccccceEEECCC----cCEEEEecCCCcEEEEE
Confidence 99999999963 2222233211 224677888774 33566666688877654
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.80 E-value=2.7 Score=40.87 Aligned_cols=110 Identities=19% Similarity=0.140 Sum_probs=71.0
Q ss_pred eeeeEEEeCCCCCEEEEEe-cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 106 FEVSRISINRNGSALLLIG-SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G-~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
-.|..+.++|+|++|+..+ +..|.|..+... ... +.+ ......+..+.|+|.+ ..|++...
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~------~~~--~~~---------~~~~~~i~~~~~~~~~-~~l~~~~~ 71 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETG------ELL--RTL---------KGHTGPVRDVAASADG-TYLASGSS 71 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC------CcE--EEE---------ecCCcceeEEEECCCC-CEEEEEcC
Confidence 4689999999999999988 567777776522 111 111 1223457899999976 68888888
Q ss_pred CCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEec-CCcEEEEc
Q 005546 185 DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYILC 251 (691)
Q Consensus 185 Dn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~-~GDIYalc 251 (691)
|+.|++|++... .....+.. ....+.+++|.+. . .+++... +|.|+..-
T Consensus 72 ~~~i~i~~~~~~--~~~~~~~~-----------~~~~i~~~~~~~~----~-~~~~~~~~~~~i~~~~ 121 (289)
T cd00200 72 DKTIRLWDLETG--ECVRTLTG-----------HTSYVSSVAFSPD----G-RILSSSSRDKTIKVWD 121 (289)
T ss_pred CCeEEEEEcCcc--cceEEEec-----------cCCcEEEEEEcCC----C-CEEEEecCCCeEEEEE
Confidence 999999999742 12112211 1225777888874 2 2333343 78877654
No 10
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=93.73 E-value=1.2 Score=52.03 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=55.1
Q ss_pred eeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecC
Q 005546 107 EVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD 185 (691)
-|.+|.+|+.|+|+|+++. +.|+|..|-.. ...| +. ......|.-+.+||...+.|||-|+|
T Consensus 477 ~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~-------~~~~--l~--------~rln~~vTa~~~~~~~~~~lvvats~ 539 (691)
T KOG2048|consen 477 SISRLVVSSDGNYIAAISTRGQIFVYNLETL-------ESHL--LK--------VRLNIDVTAAAFSPFVRNRLVVATSN 539 (691)
T ss_pred cceeEEEcCCCCEEEEEeccceEEEEEcccc-------eeec--ch--------hccCcceeeeeccccccCcEEEEecC
Confidence 5899999999999999876 47778777532 1111 11 12235688899999999999999999
Q ss_pred CeEEEEecc
Q 005546 186 SVFRLFNLA 194 (691)
Q Consensus 186 n~iRlydl~ 194 (691)
|.+-.||+.
T Consensus 540 nQv~efdi~ 548 (691)
T KOG2048|consen 540 NQVFEFDIE 548 (691)
T ss_pred CeEEEEecc
Confidence 999999994
No 11
>PTZ00420 coronin; Provisional
Probab=92.71 E-value=12 Score=44.17 Aligned_cols=161 Identities=10% Similarity=0.068 Sum_probs=89.5
Q ss_pred eEEEEeCCCeEEEEECC-cceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCC-CCEEEEEec-CeEEE
Q 005546 54 NLVAWDGASRLYYWDQN-AQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRN-GSALLLIGS-DGLCV 130 (691)
Q Consensus 54 nlla~~g~~~Lfvw~~n-~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSps-G~~LAl~G~-~~V~V 130 (691)
+.+++.+.--.+.|+.. ++.+-++.+-... . ......+.. . .-.|..+..||. +++||-.|. ..|.|
T Consensus 32 ~~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~-r------~~~v~~L~g--H-~~~V~~lafsP~~~~lLASgS~DgtIrI 101 (568)
T PTZ00420 32 CGIACSSGFVAVPWEVEGGGLIGAIRLENQM-R------KPPVIKLKG--H-TSSILDLQFNPCFSEILASGSEDLTIRV 101 (568)
T ss_pred eeEeeCCCeEEEEEEcCCCCceeEEEeeecC-C------CceEEEEcC--C-CCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence 55676654556667643 3333333331110 0 112334432 2 247999999997 788887765 57888
Q ss_pred EEeCCCCCCCCCCce-EEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcccC
Q 005546 131 MYLYGRTCSSDNKTI-ICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPV 209 (691)
Q Consensus 131 v~LP~~~~~~d~~~i-~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~ 209 (691)
-.++..... ...+ .+. ..+ ......|..+.|||.+...|+.-..|++||+||+... . ..+.+..
T Consensus 102 WDi~t~~~~--~~~i~~p~-~~L-------~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-~---~~~~i~~- 166 (568)
T PTZ00420 102 WEIPHNDES--VKEIKDPQ-CIL-------KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE-K---RAFQINM- 166 (568)
T ss_pred EECCCCCcc--ccccccce-EEe-------ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-c---EEEEEec-
Confidence 888743110 0000 010 011 1233579999999987666677778999999999742 2 1222310
Q ss_pred CCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEcc
Q 005546 210 EPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (691)
Q Consensus 210 ~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalcP 252 (691)
...+.+++|.+. +-.|.....||.|...-|
T Consensus 167 ---------~~~V~Slswspd----G~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 167 ---------PKKLSSLKWNIK----GNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred ---------CCcEEEEEECCC----CCEEEEEecCCEEEEEEC
Confidence 124677888774 222333345777766644
No 12
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.91 E-value=0.81 Score=45.15 Aligned_cols=86 Identities=10% Similarity=0.208 Sum_probs=51.9
Q ss_pred eEEEeCCCCCEEEEEecCeEEEEE--eCCC---C-CC-----------CCCCceEEEEE------Eecceeee-ecCCcc
Q 005546 109 SRISINRNGSALLLIGSDGLCVMY--LYGR---T-CS-----------SDNKTIICRTV------SVGSQIYF-SSSNVI 164 (691)
Q Consensus 109 ~~i~lSpsG~~LAl~G~~~V~Vv~--LP~~---~-~~-----------~d~~~i~crt~------~v~~~~~~-~s~~~~ 164 (691)
.-|.-|.+| .|||++.+.|+|+. +|.. . .. .+...+++... ...+..+- ......
T Consensus 8 ~~l~WS~Dg-~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~ 86 (173)
T PF12657_consen 8 NALAWSEDG-QLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISSS 86 (173)
T ss_pred cCeeECCCC-CEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccccc
Confidence 356788998 78999999999993 4541 0 00 01112222222 11111000 011223
Q ss_pred ceEEEEEecCC----CCEE-EEEecCCeEEEEeccC
Q 005546 165 RTLQVSWHPYS----DTHL-GILSSDSVFRLFNLAS 195 (691)
Q Consensus 165 ~I~qv~WHP~s----ds~L-vVLTsDn~iRlydl~~ 195 (691)
.|+++.|-|.+ ..|| .|||+++.|-+|.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 89999999987 3555 5999999999999764
No 13
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=91.36 E-value=4.3 Score=43.42 Aligned_cols=115 Identities=17% Similarity=0.329 Sum_probs=69.2
Q ss_pred EEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEE-EEecCCeE
Q 005546 110 RISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLG-ILSSDSVF 188 (691)
Q Consensus 110 ~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~Lv-VLTsDn~i 188 (691)
|++++.+|++||++-+..|.|= +++.|-.++.+|+ +|.. .+..+=+++.|-| |..|+ .-.|.++|
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiR-----sa~Ddf~si~~kc-qVpk------D~~PQWRkl~WSp--D~tlLa~a~S~G~i 67 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIR-----SAKDDFSSIIGKC-QVPK------DPNPQWRKLAWSP--DCTLLAYAESTGTI 67 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEE-----eccCCchheeEEE-ecCC------CCCchheEEEECC--CCcEEEEEcCCCeE
Confidence 6789999999999998766552 3443344555555 4532 3445789999942 54555 55567999
Q ss_pred EEEeccCCCCCCcEEEEcccCCCCCCC-CCCCCceEEEEecCC---CCCCceEEEEEecCCcE
Q 005546 189 RLFNLASDVMQPEQEYYLQPVEPGRYR-NAASICPVDFSFGGD---HLWDRFSVFVLFSDGSI 247 (691)
Q Consensus 189 Rlydl~~~~~~p~q~~~L~~~~~g~s~-~~s~~~avsf~FG~~---~~W~~~TLyiL~~~GDI 247 (691)
|+||+.- .. -|.+.| +.+. +..+..+++..|-.. ..|. .=|+++.-.|.+
T Consensus 68 ~vfdl~g--~~---lf~I~p---~~~~~~d~~~Aiagl~Fl~~~~s~~ws-~ELlvi~Y~G~L 121 (282)
T PF15492_consen 68 RVFDLMG--SE---LFVIPP---AMSFPGDLSDAIAGLIFLEYKKSAQWS-YELLVINYRGQL 121 (282)
T ss_pred EEEeccc--ce---eEEcCc---ccccCCccccceeeeEeeccccccccc-eeEEEEecccee
Confidence 9999962 21 355543 2211 122445778888864 3442 234444444444
No 14
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=91.05 E-value=2.1 Score=47.38 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=58.8
Q ss_pred ceeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 105 NFEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
.-+|.-|.-|..-.+||-=|+. ++.|..|..-.+ + -+|+. |. ....+|..+.|||..++.+.+--
T Consensus 302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~---~-------~pVA~---fk-~Hk~pItsieW~p~e~s~iaasg 367 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS---G-------QPVAT---FK-YHKAPITSIEWHPHEDSVIAASG 367 (440)
T ss_pred CCceeeEEccCCcceeeecCCCceEEEEEhhhccC---C-------Cccee---EE-eccCCeeEEEeccccCceEEecc
Confidence 4588999999998866665554 688888862211 1 12321 11 23458999999999999999999
Q ss_pred cCCeEEEEeccCCCC
Q 005546 184 SDSVFRLFNLASDVM 198 (691)
Q Consensus 184 sDn~iRlydl~~~~~ 198 (691)
+||+|.+||++.+..
T Consensus 368 ~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 368 EDNQITIWDLSVEAD 382 (440)
T ss_pred CCCcEEEEEeeccCC
Confidence 999999999987544
No 15
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=90.82 E-value=11 Score=40.42 Aligned_cols=128 Identities=12% Similarity=0.130 Sum_probs=80.6
Q ss_pred eEEEEeCCCeEEEEECCcceEEEEEeecCC-------CCCCcc--ccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEe
Q 005546 54 NLVAWDGASRLYYWDQNAQCLHRISVRLGE-------PDPTSI--LAAFPSKVMRADVKLNFEVSRISINRNGSALLLIG 124 (691)
Q Consensus 54 nlla~~g~~~Lfvw~~n~~~l~~~~lR~~~-------~~~~~~--~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G 124 (691)
|+.-..|+.+|=.+++....+..+++-|.. ++..-. .-..+..+-... ..-.|+.+-+|..|++.++..
T Consensus 35 ~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~t 112 (327)
T KOG0643|consen 35 TVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILAST 112 (327)
T ss_pred eEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEe
Confidence 445444568888888887777766654442 111000 001112222211 234689999999999999987
Q ss_pred cC------eEEEEEeCCCCCCCCC-CceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 125 SD------GLCVMYLYGRTCSSDN-KTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 125 ~~------~V~Vv~LP~~~~~~d~-~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
++ .|.|.++++..+.-+. +++ +...-+.+.|.+|.|-|+++ +|+.=-+|+.|+.||+..
T Consensus 113 D~~mg~~~~v~~fdi~~~~~~~~s~ep~-----------~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 113 DKQMGYTCFVSVFDIRDDSSDIDSEEPY-----------LKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDART 178 (327)
T ss_pred hhhcCcceEEEEEEccCChhhhcccCce-----------EEecCCccceeeeeecccCC-EEEEecCCCcEEEEEccc
Confidence 75 7889999865432111 111 12223456899999999864 677788999999999985
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.74 E-value=8 Score=46.30 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=80.0
Q ss_pred CCCceEEecCCCCceeeeEEEeCCCCCEEEEEecC--eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEE
Q 005546 92 AFPSKVMRADVKLNFEVSRISINRNGSALLLIGSD--GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQV 169 (691)
Q Consensus 92 ~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~--~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv 169 (691)
..+||++....|+ +..-+.+-|+|.++|.-+-. .|.|..+- .| ..+ + ..+.+..+|...
T Consensus 424 YrNfRTft~P~p~--QfscvavD~sGelV~AG~~d~F~IfvWS~q--TG----qll-------D----iLsGHEgPVs~l 484 (893)
T KOG0291|consen 424 YRNFRTFTSPEPI--QFSCVAVDPSGELVCAGAQDSFEIFVWSVQ--TG----QLL-------D----ILSGHEGPVSGL 484 (893)
T ss_pred cceeeeecCCCce--eeeEEEEcCCCCEEEeeccceEEEEEEEee--cC----eee-------e----hhcCCCCcceee
Confidence 4578998865554 66789999999988765443 44444332 11 111 1 234566778877
Q ss_pred EEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEE
Q 005546 170 SWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (691)
Q Consensus 170 ~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYa 249 (691)
.+.|.++ +|+-..=|++||+||+-....+ ..++.+. .+|.+++|.|+ +--|-+++-||.|--
T Consensus 485 ~f~~~~~-~LaS~SWDkTVRiW~if~s~~~-vEtl~i~------------sdvl~vsfrPd----G~elaVaTldgqItf 546 (893)
T KOG0291|consen 485 SFSPDGS-LLASGSWDKTVRIWDIFSSSGT-VETLEIR------------SDVLAVSFRPD----GKELAVATLDGQITF 546 (893)
T ss_pred EEccccC-eEEeccccceEEEEEeeccCce-eeeEeec------------cceeEEEEcCC----CCeEEEEEecceEEE
Confidence 7777766 8888888999999999743222 2244442 35888999984 456777888887755
Q ss_pred E
Q 005546 250 L 250 (691)
Q Consensus 250 l 250 (691)
.
T Consensus 547 ~ 547 (893)
T KOG0291|consen 547 F 547 (893)
T ss_pred E
Confidence 4
No 17
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=90.55 E-value=0.6 Score=53.19 Aligned_cols=105 Identities=12% Similarity=0.164 Sum_probs=63.2
Q ss_pred CceEEecCCCCceeeeEEEeCCCCC-EEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEe
Q 005546 94 PSKVMRADVKLNFEVSRISINRNGS-ALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH 172 (691)
Q Consensus 94 ~yk~L~~~~pl~feI~~i~lSpsG~-~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WH 172 (691)
.+|.|.+-- .-.|+.+..|++|. +|++.|+.+.-|+ +|-+..-.+-++---|-++ .+-+..+-..|....||
T Consensus 205 ~fr~l~P~E--~h~i~sl~ys~Tg~~iLvvsg~aqakl~---DRdG~~~~e~~KGDQYI~D--m~nTKGHia~lt~g~wh 277 (641)
T KOG0772|consen 205 SFRQLQPCE--THQINSLQYSVTGDQILVVSGSAQAKLL---DRDGFEIVEFSKGDQYIRD--MYNTKGHIAELTCGCWH 277 (641)
T ss_pred hhhccCccc--ccccceeeecCCCCeEEEEecCcceeEE---ccCCceeeeeeccchhhhh--hhccCCceeeeeccccc
Confidence 367776422 46899999999976 5566677766655 4432200000000011111 11233345577888999
Q ss_pred cCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEc
Q 005546 173 PYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYL 206 (691)
Q Consensus 173 P~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L 206 (691)
|.....+++-..|+++|+||+.+ ..+--|.|--
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~-~k~q~qVik~ 310 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNN-TKSQLQVIKT 310 (641)
T ss_pred cCcccceEEecCCCcEEEEecCC-chhheeEEee
Confidence 99988888889999999999985 3333334433
No 18
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=90.42 E-value=1.1 Score=32.28 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=27.7
Q ss_pred CCccceEEEEEecCCCCEEEEEecCCeEEEEe
Q 005546 161 SNVIRTLQVSWHPYSDTHLGILSSDSVFRLFN 192 (691)
Q Consensus 161 ~~~~~I~qv~WHP~sds~LvVLTsDn~iRlyd 192 (691)
.....|..+.|||. +.+|++-..|++||+||
T Consensus 9 ~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 34568999999999 88999999999999997
No 19
>PTZ00421 coronin; Provisional
Probab=90.28 E-value=22 Score=41.19 Aligned_cols=81 Identities=12% Similarity=0.205 Sum_probs=50.4
Q ss_pred eeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe--
Q 005546 107 EVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS-- 183 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT-- 183 (691)
.|..+..||+|++||..+. ..|.|.++.. +.. ..++ . .+.+..+.++.|+|..+..+.+-.
T Consensus 170 ~V~sla~spdG~lLatgs~Dg~IrIwD~rs------g~~--v~tl--~------~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 170 QITSLEWNLDGSLLCTTSKDKKLNIIDPRD------GTI--VSSV--E------AHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred ceEEEEEECCCCEEEEecCCCEEEEEECCC------CcE--EEEE--e------cCCCCcceEEEEcCCCCeEEEEecCC
Confidence 5889999999999988775 4677776641 111 1122 1 112234567899997654333332
Q ss_pred -cCCeEEEEeccCCCCCCcEEE
Q 005546 184 -SDSVFRLFNLASDVMQPEQEY 204 (691)
Q Consensus 184 -sDn~iRlydl~~~~~~p~q~~ 204 (691)
+|+.|++||+. ....|...+
T Consensus 234 s~Dr~VklWDlr-~~~~p~~~~ 254 (493)
T PTZ00421 234 SQQRQIMLWDTR-KMASPYSTV 254 (493)
T ss_pred CCCCeEEEEeCC-CCCCceeEe
Confidence 48999999996 344454333
No 20
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=89.40 E-value=5.9 Score=44.56 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=92.9
Q ss_pred CeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec--CeEEEEEeCCCCCC
Q 005546 62 SRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS--DGLCVMYLYGRTCS 139 (691)
Q Consensus 62 ~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~--~~V~Vv~LP~~~~~ 139 (691)
..||.-.+..++|...|.|.. .. ...+..... .-+|.-+.+||-+.++...|+ .+|.+-+|..-
T Consensus 240 ~~lF~sv~dd~~L~iwD~R~~-~~-------~~~~~~~ah---~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--- 305 (422)
T KOG0264|consen 240 EDLFGSVGDDGKLMIWDTRSN-TS-------KPSHSVKAH---SAEVNCVAFNPFNEFILATGSADKTVALWDLRNL--- 305 (422)
T ss_pred hhhheeecCCCeEEEEEcCCC-CC-------CCccccccc---CCceeEEEeCCCCCceEEeccCCCcEEEeechhc---
Confidence 456666666777777777763 11 122232211 357889999999887777665 67887777521
Q ss_pred CCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCC-CcEEEEcccCCCCCCCCCC
Q 005546 140 SDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQ-PEQEYYLQPVEPGRYRNAA 218 (691)
Q Consensus 140 ~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~-p~q~~~L~~~~~g~s~~~s 218 (691)
|+ + .|.....+-.|.||.|-|.-+++|+.=-+|+.+.+||+++-+++ +.++-.=.| ++--|--.
T Consensus 306 -------~~--~----lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgp--pEllF~Hg 370 (422)
T KOG0264|consen 306 -------NK--P----LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGP--PELLFIHG 370 (422)
T ss_pred -------cc--C----ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCC--cceeEEec
Confidence 11 1 12233566789999999999999999999999999999874332 101100000 00000000
Q ss_pred C--CceEEEEecCCCCCCceEEEEEecCC
Q 005546 219 S--ICPVDFSFGGDHLWDRFSVFVLFSDG 245 (691)
Q Consensus 219 ~--~~avsf~FG~~~~W~~~TLyiL~~~G 245 (691)
| -.+.+|++-|. .+++|--+..|+
T Consensus 371 GH~~kV~DfsWnp~---ePW~I~SvaeDN 396 (422)
T KOG0264|consen 371 GHTAKVSDFSWNPN---EPWTIASVAEDN 396 (422)
T ss_pred CcccccccccCCCC---CCeEEEEecCCc
Confidence 1 24788888886 466666666664
No 21
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=88.15 E-value=11 Score=46.98 Aligned_cols=136 Identities=20% Similarity=0.154 Sum_probs=81.0
Q ss_pred ceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 105 NFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
...|..|.-|++|+.||+.-...|.+-..- -+ + +-+--.+.|... ..+..+.|||...-.|.++|+
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~---NY--------H-WYLKqei~~~~~--~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDRVQLWTRS---NY--------H-WYLKQEIRFSSS--ESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCCceEEEee---CC--------E-EEEEEEEEccCC--CCCCceEECCCCCCEEEEEec
Confidence 568899999999999999887774332221 11 0 111101223222 235559999999999999999
Q ss_pred CCeEEEEeccC----CCCCCcE----EEEccc----CCCCCCCCC----------CCCceEEEEecCCCCCCceEEEEEe
Q 005546 185 DSVFRLFNLAS----DVMQPEQ----EYYLQP----VEPGRYRNA----------ASICPVDFSFGGDHLWDRFSVFVLF 242 (691)
Q Consensus 185 Dn~iRlydl~~----~~~~p~q----~~~L~~----~~~g~s~~~----------s~~~avsf~FG~~~~W~~~TLyiL~ 242 (691)
++.+..|+... +...+.. ...... ..+-+.... ....+++++|++.+. .+.+++
T Consensus 370 ~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~----~~avl~ 445 (928)
T PF04762_consen 370 NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS----RFAVLT 445 (928)
T ss_pred CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC----eEEEEE
Confidence 88888777753 1111110 111100 000010010 134688999998532 289999
Q ss_pred cCCcEEEEcccCCCCC
Q 005546 243 SDGSIYILCPVVPFGS 258 (691)
Q Consensus 243 ~~GDIYalcP~lP~~~ 258 (691)
.||.|+....-....+
T Consensus 446 ~d~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 446 SDGSLSIYEWDLKNMW 461 (928)
T ss_pred CCCCEEEEEecCCCcc
Confidence 9999998886665544
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.10 E-value=10 Score=46.05 Aligned_cols=80 Identities=15% Similarity=0.286 Sum_probs=54.0
Q ss_pred eeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 106 FEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
..|..+.++|+|++||..|.. .|.|-++..... +...+..-...+ .....|..+.|+|..+..|++-..
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~~~~~~~~~~--------~~~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGRDIHYPVVEL--------ASRSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--cccccccceEEe--------cccCceeeEEeccCCCCEEEEEeC
Confidence 458899999999999998864 666666542110 111110001111 112368899999988888999999
Q ss_pred CCeEEEEeccC
Q 005546 185 DSVFRLFNLAS 195 (691)
Q Consensus 185 Dn~iRlydl~~ 195 (691)
|++||+||+..
T Consensus 554 Dg~v~lWd~~~ 564 (793)
T PLN00181 554 EGVVQVWDVAR 564 (793)
T ss_pred CCeEEEEECCC
Confidence 99999999973
No 23
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=88.06 E-value=17 Score=39.54 Aligned_cols=122 Identities=15% Similarity=0.229 Sum_probs=69.6
Q ss_pred CCceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEE-
Q 005546 51 APKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLC- 129 (691)
Q Consensus 51 ~~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~- 129 (691)
..|++.|.+-.+.+|+...+...+..-|+|.-.. .++.+..+..+-.-+..+|..||+|+++.|.+.++.+
T Consensus 141 ~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk--------gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 141 SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK--------GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIY 212 (311)
T ss_pred CCCcceeECCCCcEEEEecCCCeEEEEEecccCC--------CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence 4677777776555555544333333447766542 3455554432224589999999999999999888754
Q ss_pred EEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 130 VMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 130 Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
|+.=+ ++. +.+ ++..-+ . ..... ..+.+-|.| ..++.=..|++|.+|++..
T Consensus 213 ~lDAf------~G~-~~~-tfs~~~----~-~~~~~-~~a~ftPds-~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 213 LLDAF------DGT-VKS-TFSGYP----N-AGNLP-LSATFTPDS-KFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EEEcc------CCc-Eee-eEeecc----C-CCCcc-eeEEECCCC-cEEEEecCCCcEEEEEcCC
Confidence 44333 222 222 332211 1 11222 455555544 2344445569999999964
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.00 E-value=9.3 Score=43.47 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=70.8
Q ss_pred ceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 105 NFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
.+.|..+.++|+|++++=.+. .++.|-+++.+ ... -|++. .+...|-.+.|||.+ .-++--.
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-----~~~--~~~l~---------gH~~~v~~~~f~p~g-~~i~Sgs 265 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-----GRN--LKTLK---------GHSTYVTSVAFSPDG-NLLVSGS 265 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCceEEEeeccCC-----CeE--EEEec---------CCCCceEEEEecCCC-CEEEEec
Confidence 468999999999987665544 57777777422 111 12221 234468999999999 8888999
Q ss_pred cCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEE
Q 005546 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (691)
Q Consensus 184 sDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYa 249 (691)
.|++||+||+.. .++...+..+ ..-+.+.+|.++ .--|+....||-|..
T Consensus 266 ~D~tvriWd~~~--~~~~~~l~~h-----------s~~is~~~f~~d----~~~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 266 DDGTVRIWDVRT--GECVRKLKGH-----------SDGISGLAFSPD----GNLLVSASYDGTIRV 314 (456)
T ss_pred CCCcEEEEeccC--CeEEEeeecc-----------CCceEEEEECCC----CCEEEEcCCCccEEE
Confidence 999999999974 3343333332 123566777774 333444444554433
No 25
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=87.79 E-value=2.3 Score=47.60 Aligned_cols=105 Identities=18% Similarity=0.176 Sum_probs=66.1
Q ss_pred eeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC-CCEEEEEecC
Q 005546 107 EVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILSSD 185 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s-ds~LvVLTsD 185 (691)
.|....+|++|..||-.+=.+++=| |+..+. ...| +|. ....+|.-+.|||.. +-+|+.-..|
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kv-----W~~~~~-~~~~--------~l~--gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKV-----WSVPQC-NLLQ--------TLR--GHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeE-----eecCCc-ceeE--------EEe--ccccceeeEEEccCCCccceeeeccC
Confidence 4667888999998887655544332 332222 1222 111 345689999999995 8899999999
Q ss_pred CeEEEEeccCCCCCCcEEEEcccCCCC-CCCCCCCCceEEEEecC
Q 005546 186 SVFRLFNLASDVMQPEQEYYLQPVEPG-RYRNAASICPVDFSFGG 229 (691)
Q Consensus 186 n~iRlydl~~~~~~p~q~~~L~~~~~g-~s~~~s~~~avsf~FG~ 229 (691)
+++++|+++. +.|-|++.=+...-+ -.|.-+|....+.||-.
T Consensus 241 gtvklw~~~~--e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~ 283 (459)
T KOG0272|consen 241 GTVKLWKLSQ--ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS 283 (459)
T ss_pred CceeeeccCC--CcchhhhhcchhhheeeeecCCCceeeeccccc
Confidence 9999999974 456555543321111 12333466667777765
No 26
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=87.75 E-value=44 Score=38.02 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=81.1
Q ss_pred CceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCe-EEE
Q 005546 52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDG-LCV 130 (691)
Q Consensus 52 ~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~-V~V 130 (691)
|-+.+...-.++.|+|-+|++++.+-++|.+. .|-...-+ .-+.++..+.+-|+|-.++.....+ |-|
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~----------~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGS----------QLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEEEccCCc----------EEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEE
Confidence 44555555579999999999999888886552 12222111 1135788999999999888877664 344
Q ss_pred EEeCCCC--CCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEccc
Q 005546 131 MYLYGRT--CSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQP 208 (691)
Q Consensus 131 v~LP~~~--~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~ 208 (691)
-+|-.+. ++|.+ ...+|+.+.|--. +=-|++=++|+.|++|||.+.. --++|.+..
T Consensus 374 wdlks~~~~a~Fpg-------------------ht~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~--n~kt~~l~~ 431 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPG-------------------HTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLK--NFKTIQLDE 431 (506)
T ss_pred EEcCCccccccCCC-------------------CCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhc--ccceeeccc
Confidence 4443221 12221 2234444443111 2357788888889999998643 223454421
Q ss_pred CCCCCCCCCCCCceEEEEecCC
Q 005546 209 VEPGRYRNAASICPVDFSFGGD 230 (691)
Q Consensus 209 ~~~g~s~~~s~~~avsf~FG~~ 230 (691)
..++++.+|...
T Consensus 432 ----------~~~v~s~~fD~S 443 (506)
T KOG0289|consen 432 ----------KKEVNSLSFDQS 443 (506)
T ss_pred ----------cccceeEEEcCC
Confidence 225677777653
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=87.35 E-value=18 Score=41.27 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=47.4
Q ss_pred eeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC--------CC
Q 005546 106 FEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--------DT 177 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s--------ds 177 (691)
-+|.-|..||+|.+||-..+.+- +.| |+..+... +..+.. .+-.|..+.|-|-+ +.
T Consensus 360 g~V~alk~n~tg~LLaS~SdD~T--lki---Ws~~~~~~--~~~l~~---------Hskei~t~~wsp~g~v~~n~~~~~ 423 (524)
T KOG0273|consen 360 GEVNALKWNPTGSLLASCSDDGT--LKI---WSMGQSNS--VHDLQA---------HSKEIYTIKWSPTGPVTSNPNMNL 423 (524)
T ss_pred CceEEEEECCCCceEEEecCCCe--eEe---eecCCCcc--hhhhhh---------hccceeeEeecCCCCccCCCcCCc
Confidence 38899999999999998877642 222 43212111 222211 12246666666654 57
Q ss_pred EEEEEecCCeEEEEeccC
Q 005546 178 HLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 178 ~LvVLTsDn~iRlydl~~ 195 (691)
.|+--.+|+++|+||+..
T Consensus 424 ~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDVES 441 (524)
T ss_pred eEEEeecCCeEEEEEccC
Confidence 788888999999999974
No 28
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=86.86 E-value=47 Score=35.39 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=67.8
Q ss_pred eeeeEEEeCCCCCEEEEEe--cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 106 FEVSRISINRNGSALLLIG--SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G--~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
..+.+|.++|+|++|.+.+ ...|.|..+-.. +.. ...+ .. +. .......+.++|.+.--+|.-.
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~-g~~-~~~~--~~--~~--------~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKD-GIP-VAPI--QI--IE--------GLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCC-CCC-CCce--ee--cc--------CCCcccEeEeCCCCCEEEEeeC
Confidence 3578999999999999875 578888887421 110 0000 00 10 0112456778887655556666
Q ss_pred cCCeEEEEeccCCCCCCc----EEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEec-CCcEEEE
Q 005546 184 SDSVFRLFNLASDVMQPE----QEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYIL 250 (691)
Q Consensus 184 sDn~iRlydl~~~~~~p~----q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~-~GDIYal 250 (691)
.++.|++|+++.... .. ..+.. .. +..+..+.|.++ .=.+|+.++ ++.|..+
T Consensus 146 ~~~~v~v~d~~~~g~-l~~~~~~~~~~---~~-------g~~p~~~~~~pd----g~~lyv~~~~~~~v~v~ 202 (330)
T PRK11028 146 KEDRIRLFTLSDDGH-LVAQEPAEVTT---VE-------GAGPRHMVFHPN----QQYAYCVNELNSSVDVW 202 (330)
T ss_pred CCCEEEEEEECCCCc-ccccCCCceec---CC-------CCCCceEEECCC----CCEEEEEecCCCEEEEE
Confidence 679999999975321 11 01111 01 233556777773 457888887 6666554
No 29
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.51 E-value=11 Score=46.28 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=81.4
Q ss_pred eeeEEEeCCCCCEEEEEe-----cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC------
Q 005546 107 EVSRISINRNGSALLLIG-----SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS------ 175 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G-----~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s------ 175 (691)
-++++.-||+|+|||... .+.+.|++= +.|. |...-|| +..++.-|+|||.=
T Consensus 221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR-~tWk--------~~~~LvG--------H~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIER-GTWK--------VDKDLVG--------HSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eeeecccCCCcCeecchhhccCCcceeEEEec-CCce--------eeeeeec--------CCCceEEEEeChHHhccccc
Confidence 478999999999999863 345555532 1221 1112222 22356666677652
Q ss_pred ------C----CEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCC
Q 005546 176 ------D----THLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDG 245 (691)
Q Consensus 176 ------d----s~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~G 245 (691)
. .|+.+=.-|.+|-+|+.. ...|- |..+ +.++..+++++.++ ++|+||+..-||
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~--~~RPl--~vi~--------~lf~~SI~DmsWsp----dG~~LfacS~DG 347 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTA--LPRPL--FVIH--------NLFNKSIVDMSWSP----DGFSLFACSLDG 347 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecC--CCCch--hhhh--------hhhcCceeeeeEcC----CCCeEEEEecCC
Confidence 1 266677779999999974 34442 3332 34566799999999 699999999999
Q ss_pred cEEEEcccCCC--CCCCChhHHH
Q 005546 246 SIYILCPVVPF--GSVYKWESIL 266 (691)
Q Consensus 246 DIYalcP~lP~--~~~~~~~~I~ 266 (691)
.|+.+- |=+. |-+++.+.+.
T Consensus 348 tV~~i~-Fee~ElG~~ls~ee~~ 369 (942)
T KOG0973|consen 348 TVALIH-FEEKELGVALSEEEIS 369 (942)
T ss_pred eEEEEE-cchHHhCcccChhhhc
Confidence 998873 3332 4456666665
No 30
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.46 E-value=54 Score=35.70 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=75.0
Q ss_pred ceeeeEEEeCCCCCEEEEE--ecCeEEEEEeCCCCCCCCCCceEEE--EEEe---cceeeeecCCccceEEEEEecCCCC
Q 005546 105 NFEVSRISINRNGSALLLI--GSDGLCVMYLYGRTCSSDNKTIICR--TVSV---GSQIYFSSSNVIRTLQVSWHPYSDT 177 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~--G~~~V~Vv~LP~~~~~~d~~~i~cr--t~~v---~~~~~~~s~~~~~I~qv~WHP~sds 177 (691)
.-...+|.++|+|++|.+. +.-.|.|+.|... + .+... .+.. ++. .........-++.|+|.+.-
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~-g-----~l~~~~~~~~~~g~g~~--~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD-G-----SLGEVVQTVRHEGSGPN--PDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-S-----EEEEEEEEEESEEEESS--TTTTSSTCEEEEEE-TTSSE
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC-c-----ccceeeeecccCCCCCc--ccccccccceeEEECCCCCE
Confidence 4467899999999999997 6778999999743 2 12111 1111 100 00112345678999998776
Q ss_pred EEEEEecCCeEEEEeccCCCCCCc--EEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEec-CCcEEEE
Q 005546 178 HLGILSSDSVFRLFNLASDVMQPE--QEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYIL 250 (691)
Q Consensus 178 ~LvVLTsDn~iRlydl~~~~~~p~--q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~-~GDIYal 250 (691)
-+|+-.-.+.|++|+++....+.. ..+.+. + +.-+-.+.|.++ .--+|++.+ ++.|..+
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~---~-------G~GPRh~~f~pd----g~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP---P-------GSGPRHLAFSPD----GKYAYVVNELSNTVSVF 219 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECS---T-------TSSEEEEEE-TT----SSEEEEEETTTTEEEEE
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccc---c-------CCCCcEEEEcCC----cCEEEEecCCCCcEEEE
Confidence 677777778999999986543322 222221 1 334777888884 556888876 4556655
No 31
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.07 E-value=29 Score=39.34 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=75.3
Q ss_pred CceEEEEeC-CCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec--CeE
Q 005546 52 PKNLVAWDG-ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS--DGL 128 (691)
Q Consensus 52 ~rnlla~~g-~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~--~~V 128 (691)
-||+||.-+ +.-+.+||=+.+ .+-+++.- -.-+|..+..+|.---..|.|+ .+|
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g--------------------~p~~s~~~---~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTG--------------------KPKSSITH---HGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred cceeEEecCCCceEEEEEcCCC--------------------Ccceehhh---cCCceeEEEecCCCceEEEeccccceE
Confidence 788888754 778888866541 12233431 1347888889998888888888 567
Q ss_pred EEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 005546 129 CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPE 201 (691)
Q Consensus 129 ~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~ 201 (691)
.+..+.... .. -+.++++ ..|-++.|+|.+..+.++=|.|+++|=||+.. ..+|.
T Consensus 312 ~l~D~R~~~----~s---~~~wk~~----------g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~-~~~~v 366 (463)
T KOG0270|consen 312 ALKDCRDPS----NS---GKEWKFD----------GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN-PGKPV 366 (463)
T ss_pred EeeeccCcc----cc---CceEEec----------cceEEEEecCCCceeEEEecCCceEEeeecCC-CCCce
Confidence 776665321 11 2234333 36899999999999999999999999999974 44563
No 32
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=85.83 E-value=6.6 Score=43.70 Aligned_cols=103 Identities=18% Similarity=0.322 Sum_probs=62.4
Q ss_pred CceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCC-ceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEE
Q 005546 52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFP-SKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCV 130 (691)
Q Consensus 52 ~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~-yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~V 130 (691)
+-++....++..+|+|++.+. ..+ -|+.. . .-.|.++.+||+|+|+|-..=. =.
T Consensus 336 ~erlVSgsDd~tlflW~p~~~-------------------kkpi~rmtg-H---q~lVn~V~fSPd~r~IASaSFD-kS- 390 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKS-------------------KKPITRMTG-H---QALVNHVSFSPDGRYIASASFD-KS- 390 (480)
T ss_pred cceeEEecCCceEEEeccccc-------------------ccchhhhhc-h---hhheeeEEECCCccEEEEeecc-cc-
Confidence 456777777899999988751 111 22222 1 1358899999999999865322 22
Q ss_pred EEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe-cCCeEEEEeccC
Q 005546 131 MYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS-SDSVFRLFNLAS 195 (691)
Q Consensus 131 v~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT-sDn~iRlydl~~ 195 (691)
|.| |...++..+ .++ . ..-..|-||.|- .|+-|+|=. .|.+|++|++..
T Consensus 391 VkL---W~g~tGk~l--asf-------R--GHv~~VYqvaws--aDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 391 VKL---WDGRTGKFL--ASF-------R--GHVAAVYQVAWS--ADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred eee---eeCCCcchh--hhh-------h--hccceeEEEEec--cCccEEEEcCCCceEEEEEeee
Confidence 123 322122211 011 1 133468999994 366666654 589999999974
No 33
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.70 E-value=13 Score=43.98 Aligned_cols=150 Identities=19% Similarity=0.272 Sum_probs=75.9
Q ss_pred CceEEEEeC-CCeEEEEECCcce--E-EEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCe
Q 005546 52 PKNLVAWDG-ASRLYYWDQNAQC--L-HRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDG 127 (691)
Q Consensus 52 ~rnlla~~g-~~~Lfvw~~n~~~--l-~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~ 127 (691)
-+++.|.-| +.+||+||=|..- + ..-|. .....+... | ...|..+.+|++|+.++--|..+
T Consensus 129 ~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-------------~t~~sl~sG-~-k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 129 NNELVASGGLDRKIFLWDINTGTATLVASFNN-------------VTVNSLGSG-P-KDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred CceeEEecCCCccEEEEEccCcchhhhhhccc-------------cccccCCCC-C-ccceeeeecCCcceEEEecCccc
Confidence 345666555 8999999887531 1 11110 011122212 3 24799999999995555445555
Q ss_pred EEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcc
Q 005546 128 LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQ 207 (691)
Q Consensus 128 V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~ 207 (691)
+-.+-=|+. . ...+ .|-. ++ . .|+-++-.+. ++.++--.||++||+|||. ......++.++
T Consensus 194 ~lr~wDprt-~---~kim-----kLrG---HT--d--NVr~ll~~dD-Gt~~ls~sSDgtIrlWdLg--qQrCl~T~~vH 254 (735)
T KOG0308|consen 194 DLRLWDPRT-C---KKIM-----KLRG---HT--D--NVRVLLVNDD-GTRLLSASSDGTIRLWDLG--QQRCLATYIVH 254 (735)
T ss_pred ceEEecccc-c---ccee-----eeec---cc--c--ceEEEEEcCC-CCeEeecCCCceEEeeecc--ccceeeeEEec
Confidence 444322211 1 1122 2211 11 1 2333322222 4567777899999999995 34444455553
Q ss_pred cCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEE
Q 005546 208 PVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 208 ~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYal 250 (691)
. .| +=+..-.+ +.=.+|.-.++|.||.-
T Consensus 255 ~--e~---------VWaL~~~~----sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 255 K--EG---------VWALQSSP----SFTHVYSGGRDGNIYRT 282 (735)
T ss_pred c--Cc---------eEEEeeCC----CcceEEecCCCCcEEec
Confidence 2 11 11222112 23346666788888865
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=85.63 E-value=22 Score=37.85 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=68.0
Q ss_pred CCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCC-------------------------CCCCCceEE
Q 005546 93 FPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTC-------------------------SSDNKTIIC 147 (691)
Q Consensus 93 ~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~-------------------------~~d~~~i~c 147 (691)
..|+++.- + +-+|..|.+.|++++||..|...|.+-+|..... +..++.-.|
T Consensus 31 ~C~rTiqh--~-dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 31 ICSRTIQH--P-DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred eEEEEEec--C-ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceE
Confidence 45777763 2 5689999999999999999999999988854321 001122235
Q ss_pred EEEEecc---eeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCC
Q 005546 148 RTVSVGS---QIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASD 196 (691)
Q Consensus 148 rt~~v~~---~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~ 196 (691)
|.+.+.. +..|. ..++|-.|.-||- .++|.+=+.++.||+||+..+
T Consensus 108 kIWdlR~~~~qR~~~--~~spVn~vvlhpn-QteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 108 KIWDLRSLSCQRNYQ--HNSPVNTVVLHPN-QTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EEEeccCcccchhcc--CCCCcceEEecCC-cceEEeecCCCcEEEEEccCC
Confidence 5554421 22222 3367889999986 468888899999999999754
No 35
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=85.46 E-value=7.5 Score=43.85 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=73.3
Q ss_pred CCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546 103 KLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 103 pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
+..-.|+.+.++|+|.|+.-...++.-....-. ++..+ | .--++ .+...+-.+.+||.|- -++.=
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~-----~g~~l-t--~vs~~------~s~v~~ts~~fHpDgL-ifgtg 365 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS-----SGSQL-T--VVSDE------TSDVEYTSAAFHPDGL-IFGTG 365 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEcc-----CCcEE-E--EEeec------cccceeEEeeEcCCce-EEecc
Confidence 345678899999999999988877665544321 12111 2 21111 2456789999999872 34455
Q ss_pred ecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEE
Q 005546 183 SSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 183 TsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYal 250 (691)
|.|+++++||++..... -.+ .+- .-.+.++.|+- .+|-|-+...||.|...
T Consensus 366 t~d~~vkiwdlks~~~~----a~F--------pgh-t~~vk~i~FsE----NGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNV----AKF--------PGH-TGPVKAISFSE----NGYWLATAADDGSVKLW 416 (506)
T ss_pred CCCceEEEEEcCCcccc----ccC--------CCC-CCceeEEEecc----CceEEEEEecCCeEEEE
Confidence 78999999999742110 111 111 22578899998 46667777788876654
No 36
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=85.37 E-value=5.4 Score=45.22 Aligned_cols=124 Identities=23% Similarity=0.386 Sum_probs=76.4
Q ss_pred CceEEEEeCCCeEEEEECCc-ceEEEE---------Eee------cCC--CCC--------Cccc---cCCCceEEecCC
Q 005546 52 PKNLVAWDGASRLYYWDQNA-QCLHRI---------SVR------LGE--PDP--------TSIL---AAFPSKVMRADV 102 (691)
Q Consensus 52 ~rnlla~~g~~~Lfvw~~n~-~~l~~~---------~lR------~~~--~~~--------~~~~---~~~~yk~L~~~~ 102 (691)
.+.++++.+.+++|+||=+. .|+++- .+- +.. .+. .+.. +..+-+.+.
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d--- 432 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD--- 432 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---
Confidence 58899998899999998775 455422 111 000 000 0001 111222222
Q ss_pred CCceeeeEEEeCCCCCEEEEEec---CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecC-CccceEEEEEecCCCCE
Q 005546 103 KLNFEVSRISINRNGSALLLIGS---DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSS-NVIRTLQVSWHPYSDTH 178 (691)
Q Consensus 103 pl~feI~~i~lSpsG~~LAl~G~---~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~-~~~~I~qv~WHP~sds~ 178 (691)
.|.+.|..|.+|+++..||++.. ..+-.|.+|.-.-... |..++ +-..|..+.|-|.| +.
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN---------------fP~~n~~vg~vtc~aFSP~s-G~ 496 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSN---------------FPTSNTKVGHVTCMAFSPNS-GY 496 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeecc---------------CCCCCCcccceEEEEecCCC-ce
Confidence 34678999999999999999865 5888999993321111 11111 22346777777754 46
Q ss_pred EEEEecCCeEEEEecc
Q 005546 179 LGILSSDSVFRLFNLA 194 (691)
Q Consensus 179 LvVLTsDn~iRlydl~ 194 (691)
|.|=+.++.+++|.|.
T Consensus 497 lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 497 LAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEeecCCCceeeEeec
Confidence 7788899999999874
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=84.99 E-value=68 Score=39.05 Aligned_cols=125 Identities=16% Similarity=0.135 Sum_probs=71.2
Q ss_pred eeeEEEeCCCCCEEEEEe-cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecC
Q 005546 107 EVSRISINRNGSALLLIG-SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G-~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD 185 (691)
.|..+.++ +|.+++..| +..|.|-.+...........+ +++ . .....+..+.|.|.+ ..|++-..|
T Consensus 663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l--~~~--~-------gh~~~i~~v~~s~~~-~~lasgs~D 729 (793)
T PLN00181 663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL--HSF--M-------GHTNVKNFVGLSVSD-GYIATGSET 729 (793)
T ss_pred CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce--EEE--c-------CCCCCeeEEEEcCCC-CEEEEEeCC
Confidence 56777776 455655544 457888887633111111111 111 1 122346677888874 688888999
Q ss_pred CeEEEEeccCCCCCCcEEEEcccCC--CCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEE
Q 005546 186 SVFRLFNLASDVMQPEQEYYLQPVE--PGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 186 n~iRlydl~~~~~~p~q~~~L~~~~--~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYal 250 (691)
+.+++|+.... .|...+.+.... .+......+..+.++||.+. .-.|.....+|.|..+
T Consensus 730 ~~v~iw~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~----~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 730 NEVFVYHKAFP--MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ----SSTLVAANSTGNIKIL 790 (793)
T ss_pred CEEEEEECCCC--CceEEEecccCCcccccccCCCCcEEEEEEEcCC----CCeEEEecCCCcEEEE
Confidence 99999997632 233333332110 11111112345889999884 4467777889988764
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=84.51 E-value=15 Score=39.12 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=60.1
Q ss_pred CceEEecCCCCceeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEe
Q 005546 94 PSKVMRADVKLNFEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH 172 (691)
Q Consensus 94 ~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WH 172 (691)
.-+.|.+++ +-.|+.+.+-|+|+.|+-++++ .+.|=+|+..... ..+. ++. + | .-.+.-|.+++.-
T Consensus 158 c~~~liPe~--~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~---s~l~----P~~-k-~--~ah~~~il~C~lS 224 (311)
T KOG0315|consen 158 CTHELIPED--DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA---SELE----PVH-K-F--QAHNGHILRCLLS 224 (311)
T ss_pred cccccCCCC--CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc---ccce----Ehh-h-e--ecccceEEEEEEC
Confidence 345565543 4579999999999999998887 5677788753222 1221 221 1 1 1223458888877
Q ss_pred cCCCCEEEEEecCCeEEEEeccC
Q 005546 173 PYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 173 P~sds~LvVLTsDn~iRlydl~~ 195 (691)
|.+ .+|++-.+|.++++|+++.
T Consensus 225 Pd~-k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 225 PDV-KYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred CCC-cEEEeecCCceEEEEecCC
Confidence 753 6899999999999999973
No 39
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.03 E-value=55 Score=35.08 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=33.2
Q ss_pred CccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 005546 162 NVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPE 201 (691)
Q Consensus 162 ~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~ 201 (691)
.+..|.|+.|||....++.--..|+++|+||+.. ..++.
T Consensus 146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~-~gk~~ 184 (311)
T KOG0277|consen 146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS-PGKFM 184 (311)
T ss_pred CccEEEEEecCCCCCCeEEEccCCceEEEEEecC-CCcee
Confidence 4568999999999999999999999999999874 44443
No 40
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.56 E-value=4.1 Score=42.03 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=45.7
Q ss_pred CCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCC-C-CCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEccc
Q 005546 176 DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPG-R-YRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPV 253 (691)
Q Consensus 176 ds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g-~-s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalcP~ 253 (691)
+.+|++||+++.+++||+..... .-....+.|.... . ........++++.+.. .+..| |.++||+.|+..+-
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~-~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~----~G~Pi-V~lsng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKA-VLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS----NGVPI-VTLSNGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCee-ccCCccHHHHhcccccccCCCCCcEEEEEEcC----CCCEE-EEEeCCCEEEeccc
Confidence 78899999999999999985321 1111223221110 0 0002345778888875 34554 56678999999987
Q ss_pred C
Q 005546 254 V 254 (691)
Q Consensus 254 l 254 (691)
|
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 6
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=80.45 E-value=16 Score=43.60 Aligned_cols=147 Identities=14% Similarity=0.191 Sum_probs=90.0
Q ss_pred EEEECCcceEEEEEe---ecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCC
Q 005546 65 YYWDQNAQCLHRISV---RLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSS 140 (691)
Q Consensus 65 fvw~~n~~~l~~~~l---R~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~ 140 (691)
+.|+.|+..|++..- -.-...+. ...++.....- ..+|+.+-+.|++.+|.-++. .-+.|..||.. .
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~----~~~l~s~~~ed--~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg--k- 95 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATG----SIALPSGSNED--EDEITALALTPDEEVLVTASRSQLLRVWSLPTG--K- 95 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCC----ceecccCCccc--hhhhheeeecCCccEEEEeeccceEEEEEcccc--h-
Confidence 888888877774411 11111111 11134443322 247889999999988877655 56788888833 1
Q ss_pred CCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCC
Q 005546 141 DNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASI 220 (691)
Q Consensus 141 d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~ 220 (691)
.-|++.. ....+|.-+.++|.+ .-|.+--.|+.+|+||+.... . +..|. | .+-
T Consensus 96 -----~irswKa--------~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~--~--th~fk----G-----~gG 148 (775)
T KOG0319|consen 96 -----LIRSWKA--------IHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGY--C--THSFK----G-----HGG 148 (775)
T ss_pred -----HhHhHhh--------ccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCE--E--EEEec----C-----CCc
Confidence 1233322 134579999999999 667788899999999997421 1 23332 1 133
Q ss_pred ceEEEEecCCCCCCceEEEEEecCCcEEE
Q 005546 221 CPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (691)
Q Consensus 221 ~avsf~FG~~~~W~~~TLyiL~~~GDIYa 249 (691)
.+-+++|+| .|..+=|+.=..||-|++
T Consensus 149 vVssl~F~~--~~~~~lL~sg~~D~~v~v 175 (775)
T KOG0319|consen 149 VVSSLLFHP--HWNRWLLASGATDGTVRV 175 (775)
T ss_pred eEEEEEeCC--ccchhheeecCCCceEEE
Confidence 588999999 455544444445666654
No 42
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=80.00 E-value=9.2 Score=43.39 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=54.5
Q ss_pred eEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC----------CCE
Q 005546 109 SRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS----------DTH 178 (691)
Q Consensus 109 ~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s----------ds~ 178 (691)
..+.+||+|++||+...+.+.|+... |...+... ...++.+--..-....++-.|..+.|-|++ .+|
T Consensus 5 ~~isls~~~d~laiA~~~r~vil~~~--w~~~~~~~-~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~ 81 (415)
T PF14655_consen 5 CSISLSPDGDLLAIARGQRLVILTSK--WDSSRKGE-NENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTC 81 (415)
T ss_pred ceEEecCCCCEEEEEcCCEEEEEEee--ccccccCC-CCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEE
Confidence 46789999999999999999998776 51101000 011111110000111222579999999992 389
Q ss_pred EEEEecCCeEEEEecc
Q 005546 179 LGILSSDSVFRLFNLA 194 (691)
Q Consensus 179 LvVLTsDn~iRlydl~ 194 (691)
++|=|+++.||+|..+
T Consensus 82 I~VG~ssG~vrfyte~ 97 (415)
T PF14655_consen 82 IAVGTSSGYVRFYTEN 97 (415)
T ss_pred EEEEecccEEEEEecc
Confidence 9999999999999985
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.37 E-value=23 Score=40.35 Aligned_cols=84 Identities=20% Similarity=0.319 Sum_probs=54.2
Q ss_pred ceEEecCCCCceeeeEEEeCCCCCEEEEEecCeE-EEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEec
Q 005546 95 SKVMRADVKLNFEVSRISINRNGSALLLIGSDGL-CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHP 173 (691)
Q Consensus 95 yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V-~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP 173 (691)
-+.|... .-.|..+.+|++|++|+..+..+. .|-++- ...+.|.....+ ..++. .+..+.|||
T Consensus 281 ~~~l~~h---s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~-------~~~~~~~~~~~~-----~~~~~-~~~~~~fsp 344 (456)
T KOG0266|consen 281 VRKLKGH---SDGISGLAFSPDGNLLVSASYDGTIRVWDLE-------TGSKLCLKLLSG-----AENSA-PVTSVQFSP 344 (456)
T ss_pred EEeeecc---CCceEEEEECCCCCEEEEcCCCccEEEEECC-------CCceeeeecccC-----CCCCC-ceeEEEECC
Confidence 4455543 236889999999999999875443 333332 111112212121 11334 789999997
Q ss_pred CCCCEEEEEecCCeEEEEeccC
Q 005546 174 YSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 174 ~sds~LvVLTsDn~iRlydl~~ 195 (691)
.+ .+|++-+.|+.+|+||+..
T Consensus 345 ~~-~~ll~~~~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 345 NG-KYLLSASLDRTLKLWDLRS 365 (456)
T ss_pred CC-cEEEEecCCCeEEEEEccC
Confidence 65 5788899999999999984
No 44
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=78.52 E-value=97 Score=32.97 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=49.4
Q ss_pred eeeeEEEeCCCCCEEEEEe--cCeEEEEEeCCCCCCCCCCceEE-EEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546 106 FEVSRISINRNGSALLLIG--SDGLCVMYLYGRTCSSDNKTIIC-RTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G--~~~V~Vv~LP~~~~~~d~~~i~c-rt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
-.++++.++|+|++|.+.. ..+|.|.++....+ .+.. .++...+.. + .... ....+.+||.+ ..|.|.
T Consensus 175 ~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-----~~~~~~~~~~~p~~-~-~~~~-~~~~i~~~pdg-~~lyv~ 245 (330)
T PRK11028 175 AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-----EIECVQTLDMMPAD-F-SDTR-WAADIHITPDG-RHLYAC 245 (330)
T ss_pred CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-----CEEEEEEEecCCCc-C-CCCc-cceeEEECCCC-CEEEEe
Confidence 3568999999999998885 58999999963211 1111 111111110 0 0111 12357788855 445554
Q ss_pred e-cCCeEEEEeccCCC
Q 005546 183 S-SDSVFRLFNLASDV 197 (691)
Q Consensus 183 T-sDn~iRlydl~~~~ 197 (691)
. .+++|.+|+++.+.
T Consensus 246 ~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 246 DRTASLISVFSVSEDG 261 (330)
T ss_pred cCCCCeEEEEEEeCCC
Confidence 3 47999999997543
No 45
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=78.47 E-value=13 Score=43.56 Aligned_cols=127 Identities=17% Similarity=0.301 Sum_probs=75.1
Q ss_pred eeeeEEEeCCCCCEEEEEec----CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEE
Q 005546 106 FEVSRISINRNGSALLLIGS----DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGI 181 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~----~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvV 181 (691)
-.|+|+.--.-|+|||.+-. +.|.|-.|-++.+. | . |. .....|..|.|||.. ++|+|
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-------~--------P-F~-kskG~vq~v~FHPs~-p~lfV 583 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-------S--------P-FR-KSKGLVQRVKFHPSK-PYLFV 583 (733)
T ss_pred CccceeeeecCCceEEEeccCCCcceEEEEeccccccc-------C--------c-hh-hcCCceeEEEecCCC-ceEEE
Confidence 37999999999999999844 78888777655321 0 0 11 233468888899864 45555
Q ss_pred EecCCeEEEEeccCC--------CCCCcEEEEcccCCCCCC--CCCC--CCceEEEEecCC---------------CCCC
Q 005546 182 LSSDSVFRLFNLASD--------VMQPEQEYYLQPVEPGRY--RNAA--SICPVDFSFGGD---------------HLWD 234 (691)
Q Consensus 182 LTsDn~iRlydl~~~--------~~~p~q~~~L~~~~~g~s--~~~s--~~~avsf~FG~~---------------~~W~ 234 (691)
-|. +.||+||+.+. +..--..+.+++ .|-. .+.. -++.-+.++++. ..=.
T Consensus 584 aTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp--~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ 660 (733)
T KOG0650|consen 584 ATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP--NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK 660 (733)
T ss_pred Eec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC--CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc
Confidence 555 78899998751 111111233332 1110 0111 234445555532 1224
Q ss_pred ceEEEEEecC-CcEEEEccc
Q 005546 235 RFSVFVLFSD-GSIYILCPV 253 (691)
Q Consensus 235 ~~TLyiL~~~-GDIYalcP~ 253 (691)
++.||...++ |+++.++--
T Consensus 661 ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 661 RYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred ccceeeeecCCCcEEEEeee
Confidence 8899998875 999998754
No 46
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=77.68 E-value=15 Score=41.54 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=74.0
Q ss_pred eEEEeCCC--CCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCC
Q 005546 109 SRISINRN--GSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDS 186 (691)
Q Consensus 109 ~~i~lSps--G~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn 186 (691)
..|+-|+. |++|.=.-.++|++-+|..... +...+.. +..|. ..+..|-.|.|||..+.-+.-...|+
T Consensus 181 ~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~--~~~~~~p-------~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSGSDDHTICLWDINAESK--EDKVVDP-------KTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred cccccccccceeEeeccCCCcEEEEecccccc--CCccccc-------eEEee-cCCcceehhhccccchhhheeecCCC
Confidence 34666666 5555555557899888863311 2222222 32233 44567999999999999999999999
Q ss_pred eEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEE
Q 005546 187 VFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 187 ~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYal 250 (691)
.+-|||+.....+|... ..+-+.++-+..|.|-+ .+-|--...||.|+..
T Consensus 251 ~L~iwD~R~~~~~~~~~-----------~~ah~~~vn~~~fnp~~---~~ilAT~S~D~tV~Lw 300 (422)
T KOG0264|consen 251 KLMIWDTRSNTSKPSHS-----------VKAHSAEVNCVAFNPFN---EFILATGSADKTVALW 300 (422)
T ss_pred eEEEEEcCCCCCCCccc-----------ccccCCceeEEEeCCCC---CceEEeccCCCcEEEe
Confidence 99999997532233211 12224467788888853 3444344457777655
No 47
>PRK01742 tolB translocation protein TolB; Provisional
Probab=77.21 E-value=66 Score=36.12 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=45.1
Q ss_pred eeeEEEeCCCCCEEEEEec----CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546 107 EVSRISINRNGSALLLIGS----DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~----~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
.+.....||+|+.||..+. ..|.+..+.. + .. +.+ . . + .. ....+.|+|.+..-++..
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t--g-----~~--~~l--~--~-~---~g-~~~~~~wSPDG~~La~~~ 266 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS--G-----AR--KVV--A--S-F---RG-HNGAPAFSPDGSRLAFAS 266 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC--C-----ce--EEE--e--c-C---CC-ccCceeECCCCCEEEEEE
Confidence 4778999999999998753 3577776641 1 11 111 0 0 1 00 123578999776555566
Q ss_pred ecCCeEEEEeccCCC
Q 005546 183 SSDSVFRLFNLASDV 197 (691)
Q Consensus 183 TsDn~iRlydl~~~~ 197 (691)
..|+.+++|.++.+.
T Consensus 267 ~~~g~~~Iy~~d~~~ 281 (429)
T PRK01742 267 SKDGVLNIYVMGANG 281 (429)
T ss_pred ecCCcEEEEEEECCC
Confidence 678888888765433
No 48
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=77.15 E-value=37 Score=37.05 Aligned_cols=104 Identities=14% Similarity=0.243 Sum_probs=67.3
Q ss_pred ceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEE
Q 005546 72 QCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTV 150 (691)
Q Consensus 72 ~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~ 150 (691)
+.+.+.||+... ..+|.+. .|+.+++|.|.+=++++.-||-+- -.|.|-.+..+.. .+.-.++|.--
T Consensus 176 r~i~vynL~n~~---------te~k~~~--SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~ 243 (347)
T KOG0647|consen 176 RHIAVYNLENPP---------TEFKRIE--SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRS 243 (347)
T ss_pred CcEEEEEcCCCc---------chhhhhc--CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEecc
Confidence 445555665442 2366665 368999999888877766666443 3566666654322 23345666321
Q ss_pred E--ecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 151 S--VGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 151 ~--v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
. +.+.. -.|-.+.+|| --.+||+.-+|+++.+||-+.
T Consensus 244 ~~~~~~~V-------YaVNsi~FhP-~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 244 TNSVNDDV-------YAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred CCCCCCce-------EEecceEeec-ccceEEEecCCceEEEecchh
Confidence 0 22211 2478899999 678999999999999999763
No 49
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=77.13 E-value=18 Score=36.36 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=44.6
Q ss_pred eeeEEEeCCCCCEEEEEecC----eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546 107 EVSRISINRNGSALLLIGSD----GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~----~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
.+..|..||+|++||+.|-. .|.+-... +... + . + .....+..+.|.|.|.--+..-
T Consensus 102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~------~~~~-----i--~-~-----~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 102 PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR------KKKK-----I--S-T-----FEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred CceEEEECCCCCEEEEEEccCCCcEEEEEECC------CCEE-----e--e-c-----cccCcEEEEEEcCCCCEEEEEE
Confidence 45679999999999999854 34444433 1111 1 1 0 1112467889999985444444
Q ss_pred e-----cCCeEEEEecc
Q 005546 183 S-----SDSVFRLFNLA 194 (691)
Q Consensus 183 T-----sDn~iRlydl~ 194 (691)
+ .||.++||+.+
T Consensus 163 t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eccceeccccEEEEEec
Confidence 4 49999999986
No 50
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=76.77 E-value=31 Score=34.65 Aligned_cols=30 Identities=13% Similarity=0.408 Sum_probs=22.9
Q ss_pred cceEEEEEecCCCCEEEEEe--cCCeEEEEecc
Q 005546 164 IRTLQVSWHPYSDTHLGILS--SDSVFRLFNLA 194 (691)
Q Consensus 164 ~~I~qv~WHP~sds~LvVLT--sDn~iRlydl~ 194 (691)
..|..+.|.|.++. ++|++ .++.+++||+.
T Consensus 60 ~~I~~~~WsP~g~~-favi~g~~~~~v~lyd~~ 91 (194)
T PF08662_consen 60 GPIHDVAWSPNGNE-FAVIYGSMPAKVTLYDVK 91 (194)
T ss_pred CceEEEEECcCCCE-EEEEEccCCcccEEEcCc
Confidence 35999999997754 44444 56899999995
No 51
>PTZ00420 coronin; Provisional
Probab=75.28 E-value=52 Score=38.96 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=30.0
Q ss_pred CccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 162 NVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 162 ~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
+...|..+.|||..+..|+.-..|++||+||+..
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t 106 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPH 106 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Confidence 3457999999998888899999999999999974
No 52
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=74.18 E-value=1e+02 Score=31.07 Aligned_cols=117 Identities=9% Similarity=0.110 Sum_probs=64.0
Q ss_pred eeeeEEEeCCCCCEEEEEe--cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 106 FEVSRISINRNGSALLLIG--SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G--~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
..+..+.++++|++|++.+ ...|.+..+... ..+ +.+...... . .........+.|+|.+...++...
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~------~~~--~~~~~~~~~-~-~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR------KVI--KKITFEIPG-V-HPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc------eee--eeeeecccc-c-ccccCCccceEECCCCCEEEEEcC
Confidence 3456788999999998775 356777766421 111 122111000 0 001112345778887776566667
Q ss_pred cCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEec-CCcEEEE
Q 005546 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYIL 250 (691)
Q Consensus 184 sDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~-~GDIYal 250 (691)
.++.+++||+.. . +.... +. . +..+.+++|.|.+. -||+... +|+|...
T Consensus 227 ~~~~i~v~d~~~-~-~~~~~--~~---~-------~~~~~~~~~~~~g~----~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 227 PANRVAVVDAKT-Y-EVLDY--LL---V-------GQRVWQLAFTPDEK----YLLTTNGVSNDVSVI 276 (300)
T ss_pred CCCeEEEEECCC-C-cEEEE--EE---e-------CCCcceEEECCCCC----EEEEEcCCCCeEEEE
Confidence 788999999852 2 22111 11 1 11245677877532 4666543 6777765
No 53
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=73.68 E-value=8.5 Score=24.82 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=23.8
Q ss_pred cceEEEEEecCCCCEEEEEecCCeEEEEe
Q 005546 164 IRTLQVSWHPYSDTHLGILSSDSVFRLFN 192 (691)
Q Consensus 164 ~~I~qv~WHP~sds~LvVLTsDn~iRlyd 192 (691)
..|..+.|+|.+ ..++.-..|+.+++|+
T Consensus 13 ~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 468999999977 6777888899999996
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=73.65 E-value=11 Score=40.10 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=56.2
Q ss_pred eeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecC
Q 005546 107 EVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD 185 (691)
.++.+.-|-+|+.||--.. ..+.|.-+-+- .+ .... ........|.|..|||-...-+++-..|
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~--r~--------~~~~-----~~~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERD--RF--------RKEL-----VYRGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecch--hh--------hhhh-----cccCCCcchhhheeCCCCCcceEEecCC
Confidence 7889999999999986433 45555444211 00 0001 1123445699999999999999999999
Q ss_pred CeEEEEeccCCCCCCcEEEEc
Q 005546 186 SVFRLFNLASDVMQPEQEYYL 206 (691)
Q Consensus 186 n~iRlydl~~~~~~p~q~~~L 206 (691)
.+||+||+.. .+|.+.+..
T Consensus 87 k~ir~wd~r~--~k~~~~i~~ 105 (313)
T KOG1407|consen 87 KTIRIWDIRS--GKCTARIET 105 (313)
T ss_pred ceEEEEEecc--CcEEEEeec
Confidence 9999999963 455544444
No 55
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=73.57 E-value=14 Score=40.16 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCCCceeeeEEEeCCCCCEEEEEe-cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEE
Q 005546 101 DVKLNFEVSRISINRNGSALLLIG-SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHL 179 (691)
Q Consensus 101 ~~pl~feI~~i~lSpsG~~LAl~G-~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~L 179 (691)
+|| ..-|..+.++|++.+|++.. +..+.+-+.|.. +++ . -| ..+.+|+.+.|++ +.++
T Consensus 10 npP-~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-------~l~--------~-~~--~~~~plL~c~F~d--~~~~ 68 (323)
T KOG1036|consen 10 NPP-EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-------SLK--------L-KF--KHGAPLLDCAFAD--ESTI 68 (323)
T ss_pred CCC-hhceeeEEEcCcCCcEEEEeccCcEEEEeccch-------hhh--------h-he--ecCCceeeeeccC--CceE
Confidence 455 46799999999988887653 223444444322 110 0 01 2456799999998 8899
Q ss_pred EEEecCCeEEEEeccCCC
Q 005546 180 GILSSDSVFRLFNLASDV 197 (691)
Q Consensus 180 vVLTsDn~iRlydl~~~~ 197 (691)
++=+.|++||.||+..+.
T Consensus 69 ~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 69 VTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred EEeccCceEEEEEecCCc
Confidence 999999999999998543
No 56
>PRK05137 tolB translocation protein TolB; Provisional
Probab=73.50 E-value=1.4e+02 Score=33.55 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=43.5
Q ss_pred eeeEEEeCCCCCEEEEEe----cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546 107 EVSRISINRNGSALLLIG----SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G----~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
.+.....||+|+.||... ...|.+..+... . .+ .|. .. ...+....|+|.+..-++..
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g--~-------~~--~l~------~~-~g~~~~~~~SPDG~~la~~~ 264 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG--Q-------RE--LVG------NF-PGMTFAPRFSPDGRKVVMSL 264 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC--c-------EE--Eee------cC-CCcccCcEECCCCCEEEEEE
Confidence 477889999999999874 357777777421 1 11 111 01 12355778999766555566
Q ss_pred ecCCeEEEEecc
Q 005546 183 SSDSVFRLFNLA 194 (691)
Q Consensus 183 TsDn~iRlydl~ 194 (691)
..|+...+|-++
T Consensus 265 ~~~g~~~Iy~~d 276 (435)
T PRK05137 265 SQGGNTDIYTMD 276 (435)
T ss_pred ecCCCceEEEEE
Confidence 666665565443
No 57
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=73.47 E-value=1.1e+02 Score=30.95 Aligned_cols=115 Identities=14% Similarity=0.216 Sum_probs=58.3
Q ss_pred eeeEEEeCCCCCEEEEEecCe--EEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe-
Q 005546 107 EVSRISINRNGSALLLIGSDG--LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS- 183 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~~--V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT- 183 (691)
.+..+.++|+|+++++....+ +.++.+. ..... +...++ .....+.|.|.+. .|++-.
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-------~~~~~-~~~~~~----------~~~~~~~~s~dg~-~l~~~~~ 176 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTK-------TYEIV-DNVLVD----------QRPRFAEFTADGK-ELWVSSE 176 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCC-------CCeEE-EEEEcC----------CCccEEEECCCCC-EEEEEcC
Confidence 467899999999999877653 3333322 11110 111111 1234577877643 343333
Q ss_pred cCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEec-CCcEEEE
Q 005546 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYIL 250 (691)
Q Consensus 184 sDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~-~GDIYal 250 (691)
.|+.|++||+... +....+.+.. ++.. .....+.+++|.++ .-.+|+.+. ++.|+.+
T Consensus 177 ~~~~v~i~d~~~~--~~~~~~~~~~--~~~~--~~~~~~~~i~~s~d----g~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 177 IGGTVSVIDVATR--KVIKKITFEI--PGVH--PEAVQPVGIKLTKD----GKTAFVALGPANRVAVV 234 (300)
T ss_pred CCCEEEEEEcCcc--eeeeeeeecc--cccc--cccCCccceEECCC----CCEEEEEcCCCCeEEEE
Confidence 4899999999742 2222333321 1111 11224556778774 224666654 3445443
No 58
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.17 E-value=1.5e+02 Score=32.60 Aligned_cols=116 Identities=13% Similarity=0.159 Sum_probs=69.5
Q ss_pred CCCceEEEEeCCCeEEEEECC--cceEEEE-EeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec-
Q 005546 50 GAPKNLVAWDGASRLYYWDQN--AQCLHRI-SVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS- 125 (691)
Q Consensus 50 ~~~rnlla~~g~~~Lfvw~~n--~~~l~~~-~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~- 125 (691)
.-.|++-+|.-+..+=+|+.+ .+...++ .||... .+-.|+.=..|. | |+-+|.+.-
T Consensus 23 ~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~--------~Si~rV~WAhPE--f----------GqvvA~cS~D 82 (361)
T KOG2445|consen 23 FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD--------GSIWRVVWAHPE--F----------GQVVATCSYD 82 (361)
T ss_pred ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC--------CcEEEEEecCcc--c----------cceEEEEecC
Confidence 357888888889999999932 2555433 666653 122555544332 2 566666543
Q ss_pred CeEEEEEe-CCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC-CCEEEEEecCCeEEEEecc
Q 005546 126 DGLCVMYL-YGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 126 ~~V~Vv~L-P~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s-ds~LvVLTsDn~iRlydl~ 194 (691)
+++.|=|= +...-.....=++|.+ +. ++.+.|..|.|-|.- +--|+.+.+|++||||+.-
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~~tt-------l~--DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~ 144 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVRRTT-------LV--DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP 144 (361)
T ss_pred CceeeeeecccccccccceeEEEEE-------ee--cCCcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence 45555332 1110000011122222 22 345679999999998 7788899999999999985
No 59
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=72.87 E-value=13 Score=43.93 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=29.5
Q ss_pred ccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 163 VIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 163 ~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
.-.|...+|||+...-|.+-..|.+|++||+..
T Consensus 677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred cceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 346899999999988888999999999999985
No 60
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=72.84 E-value=40 Score=38.06 Aligned_cols=114 Identities=16% Similarity=0.270 Sum_probs=61.5
Q ss_pred eEEEeCCCCCEEEEEecC-eEEE--------EEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEE
Q 005546 109 SRISINRNGSALLLIGSD-GLCV--------MYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHL 179 (691)
Q Consensus 109 ~~i~lSpsG~~LAl~G~~-~V~V--------v~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~L 179 (691)
..+.++|.|-.+|++-+. .+.- +.+-...| ..+ .++... . .+|+..-|-. +.+|
T Consensus 32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG----~ll--~~i~w~--------~-~~iv~~~wt~--~e~L 94 (410)
T PF04841_consen 32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG----KLL--SSIPWD--------S-GRIVGMGWTD--DEEL 94 (410)
T ss_pred eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC----CEe--EEEEEC--------C-CCEEEEEECC--CCeE
Confidence 356889999999999766 2211 22221111 111 112111 1 3566666633 7899
Q ss_pred EEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEcc
Q 005546 180 GILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (691)
Q Consensus 180 vVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalcP 252 (691)
|||++|+++|+||+. ++. .|.+... -...+..+-.+-...|+. -.+.+|+++++||.+.-
T Consensus 95 vvV~~dG~v~vy~~~--G~~---~fsl~~~--i~~~~v~e~~i~~~~~~~------~GivvLt~~~~~~~v~n 154 (410)
T PF04841_consen 95 VVVQSDGTVRVYDLF--GEF---QFSLGEE--IEEEKVLECRIFAIWFYK------NGIVVLTGNNRFYVVNN 154 (410)
T ss_pred EEEEcCCEEEEEeCC--Cce---eechhhh--ccccCcccccccccccCC------CCEEEECCCCeEEEEeC
Confidence 999999999999985 222 3544210 000011010111123332 23788999999999843
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=72.17 E-value=58 Score=37.90 Aligned_cols=74 Identities=12% Similarity=0.222 Sum_probs=51.5
Q ss_pred ceeeeEEEeCCCCCEEEEEecCeEEEE-EeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 105 NFEVSRISINRNGSALLLIGSDGLCVM-YLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~G~~~V~Vv-~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
.-+|.-|..||+|.|||..-.+.-.|+ .+-.+ ..+-+.+ .|+ ..+|..+.|-|.+. ++..=.
T Consensus 487 ~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~-------~~~~~~w-----~FH----takI~~~aWsP~n~-~vATGS 549 (603)
T KOG0318|consen 487 RAAITDVAYSPDGAYLAAGDASRKVVLYDVASR-------EVKTNRW-----AFH----TAKINCVAWSPNNK-LVATGS 549 (603)
T ss_pred cCCceEEEECCCCcEEEEeccCCcEEEEEcccC-------ceeccee-----eee----eeeEEEEEeCCCce-EEEecc
Confidence 357899999999999999876655544 33211 1222233 133 35899999999874 555666
Q ss_pred cCCeEEEEeccC
Q 005546 184 SDSVFRLFNLAS 195 (691)
Q Consensus 184 sDn~iRlydl~~ 195 (691)
=|.+|-+|++++
T Consensus 550 lDt~Viiysv~k 561 (603)
T KOG0318|consen 550 LDTNVIIYSVKK 561 (603)
T ss_pred ccceEEEEEccC
Confidence 689999999985
No 62
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=71.47 E-value=51 Score=40.54 Aligned_cols=75 Identities=15% Similarity=0.294 Sum_probs=54.5
Q ss_pred CCceeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEE
Q 005546 103 KLNFEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGI 181 (691)
Q Consensus 103 pl~feI~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvV 181 (691)
+..+.++.+.+|-+|+++|.-|+. .|-|+.+-+. +.. .+......+|+++.+||.+ .-|+|
T Consensus 94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~------s~~-----------~~lrgh~apVl~l~~~p~~-~fLAv 155 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS------SQE-----------KVLRGHDAPVLQLSYDPKG-NFLAV 155 (933)
T ss_pred eeeccceEEEEecCCcEEEeecCceeEEEEecccc------chh-----------eeecccCCceeeeeEcCCC-CEEEE
Confidence 446789999999999999987765 3444444322 111 1222445689999999975 57889
Q ss_pred EecCCeEEEEeccC
Q 005546 182 LSSDSVFRLFNLAS 195 (691)
Q Consensus 182 LTsDn~iRlydl~~ 195 (691)
-+-|+.+++||++.
T Consensus 156 ss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 156 SSCDGKVQIWDLQD 169 (933)
T ss_pred EecCceEEEEEccc
Confidence 99999999999985
No 63
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=71.09 E-value=25 Score=39.64 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=71.0
Q ss_pred EEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec-CeEEEEEeC
Q 005546 56 VAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DGLCVMYLY 134 (691)
Q Consensus 56 la~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP 134 (691)
+++.-++.|..=-+..+--.+=|+|.+. .+|...-.+ -+|..+..||||-+||--|. .++-|=+|-
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr------------~im~L~gH~-k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGR------------CIMFLAGHI-KEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCc------------EEEEecccc-cceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 3444445555433333222233666653 234334444 48999999999999998655 567777776
Q ss_pred CCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEecc
Q 005546 135 GRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 135 ~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~ 194 (691)
.|.. .+.+- ....-|-||.+-|.++..||.-.-||++++|.-.
T Consensus 376 ~r~~----------ly~ip-------AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 376 MRSE----------LYTIP-------AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred cccc----------ceecc-------cccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 4411 23332 1233589999999779999999999999999875
No 64
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=70.87 E-value=27 Score=40.29 Aligned_cols=167 Identities=14% Similarity=0.168 Sum_probs=86.1
Q ss_pred EEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCC--C--C
Q 005546 66 YWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTC--S--S 140 (691)
Q Consensus 66 vw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~--~--~ 140 (691)
|+.+..+|+-+-++.... ++ ..-.++=+.++. + =||...+.|+|+-|.+=|+ .+|.|-+|-...- + .
T Consensus 434 VyTgGkgcVKVWdis~pg--~k----~PvsqLdcl~rd-n-yiRSckL~pdgrtLivGGeastlsiWDLAapTprikael 505 (705)
T KOG0639|consen 434 VYTGGKGCVKVWDISQPG--NK----SPVSQLDCLNRD-N-YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL 505 (705)
T ss_pred eEecCCCeEEEeeccCCC--CC----CccccccccCcc-c-ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhc
Confidence 444566777766664431 11 111233333333 3 3999999999999999887 5788887754321 0 0
Q ss_pred CCCceEEEEEEe--cceeeeec-----------CCccceEEEEEecCCCCEEEEEe---------cCCeEEEEeccCCCC
Q 005546 141 DNKTIICRTVSV--GSQIYFSS-----------SNVIRTLQVSWHPYSDTHLGILS---------SDSVFRLFNLASDVM 198 (691)
Q Consensus 141 d~~~i~crt~~v--~~~~~~~s-----------~~~~~I~qv~WHP~sds~LvVLT---------sDn~iRlydl~~~~~ 198 (691)
......|...-+ |...-|.+ +...-|+|.-=|+.+-+||.|=- =||++|-||+.. .-
T Consensus 506 tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre-gr 584 (705)
T KOG0639|consen 506 TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE-GR 584 (705)
T ss_pred CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh-hh
Confidence 000111211111 11101111 12234666666777777777652 278888888863 22
Q ss_pred CCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEcccCCCCC
Q 005546 199 QPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPVVPFGS 258 (691)
Q Consensus 199 ~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalcP~lP~~~ 258 (691)
++. ..++. ..+-|....|...|- -+=|+|+.|..+.--=|.+-
T Consensus 585 qlq-qhdF~------------SQIfSLg~cP~~dWl----avGMens~vevlh~skp~ky 627 (705)
T KOG0639|consen 585 QLQ-QHDFS------------SQIFSLGYCPTGDWL----AVGMENSNVEVLHTSKPEKY 627 (705)
T ss_pred hhh-hhhhh------------hhheecccCCCccce----eeecccCcEEEEecCCccce
Confidence 221 12221 113333333555663 34488888888876555443
No 65
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=69.88 E-value=52 Score=35.92 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=69.7
Q ss_pred ecCCCCceeeeEEEeCCCCCEEEEEec--CeEEEEEeCCCC---CC---CCCCceEE-------------------EEEE
Q 005546 99 RADVKLNFEVSRISINRNGSALLLIGS--DGLCVMYLYGRT---CS---SDNKTIIC-------------------RTVS 151 (691)
Q Consensus 99 ~~~~pl~feI~~i~lSpsG~~LAl~G~--~~V~Vv~LP~~~---~~---~d~~~i~c-------------------rt~~ 151 (691)
.++|| ...|..|.+||....|+.+|+ .+|.+-++-..- ++ .-..++.| |.+.
T Consensus 22 v~~pP-~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 22 VPNPP-EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cCCCc-ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 34566 678999999998888888887 688888886531 10 00112222 2232
Q ss_pred ecceeeee--cCCccceEEEEEecCC-CCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCC
Q 005546 152 VGSQIYFS--SSNVIRTLQVSWHPYS-DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAA 218 (691)
Q Consensus 152 v~~~~~~~--s~~~~~I~qv~WHP~s-ds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s 218 (691)
|... -.. .-+..+|+.++|-+.. ..||++=.=|-+||+||... ..|.-++.| ++|.+.+.
T Consensus 101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~--~~pv~t~~L----PeRvYa~D 163 (347)
T KOG0647|consen 101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS--SNPVATLQL----PERVYAAD 163 (347)
T ss_pred ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC--CCeeeeeec----cceeeehh
Confidence 2211 000 0145578888888887 68999888899999999863 334333333 66766654
No 66
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=69.78 E-value=2.3e+02 Score=33.27 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=70.4
Q ss_pred CCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEE-ecCeEEEEEeCCCCCC
Q 005546 61 ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLI-GSDGLCVMYLYGRTCS 139 (691)
Q Consensus 61 ~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~-G~~~V~Vv~LP~~~~~ 139 (691)
++.+|++|++.+... ..|.-+..-.--|..|.-||+++.++-+ ++.++-|=++-.+
T Consensus 211 Dgki~iyDGktge~v--------------------g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~--- 267 (603)
T KOG0318|consen 211 DGKIYIYDGKTGEKV--------------------GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN--- 267 (603)
T ss_pred CccEEEEcCCCccEE--------------------EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc---
Confidence 788888888753221 1121122335678899999998777655 5678877766533
Q ss_pred CCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEE
Q 005546 140 SDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQE 203 (691)
Q Consensus 140 ~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~ 203 (691)
++ -++++.+.+ -.-..+-++|. ..||+++..+++|.+||.+ +.. +.+.
T Consensus 268 ----sl-v~t~~~~~~------v~dqqvG~lWq---kd~lItVSl~G~in~ln~~-d~~-~~~~ 315 (603)
T KOG0318|consen 268 ----SL-VSTWPMGST------VEDQQVGCLWQ---KDHLITVSLSGTINYLNPS-DPS-VLKV 315 (603)
T ss_pred ----ce-EEEeecCCc------hhceEEEEEEe---CCeEEEEEcCcEEEEeccc-CCC-hhhe
Confidence 22 467777654 12356888998 8999999999999999998 455 4333
No 67
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=69.56 E-value=1.9e+02 Score=32.25 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=45.8
Q ss_pred CCceEEEEeCCCeEEEEEC---------CcceEEEEEeecCCCCCCccccCCCceEEec--CCC--CceeeeEEEeCCCC
Q 005546 51 APKNLVAWDGASRLYYWDQ---------NAQCLHRISVRLGEPDPTSILAAFPSKVMRA--DVK--LNFEVSRISINRNG 117 (691)
Q Consensus 51 ~~rnlla~~g~~~Lfvw~~---------n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~--~~p--l~feI~~i~lSpsG 117 (691)
.||.+++-+ +..||+... ....+.++|...... -+-+.. +|. +.-...++.+||+|
T Consensus 48 ~P~~~~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~----------~~~i~~p~~p~~~~~~~~~~~~ls~dg 116 (352)
T TIGR02658 48 LPNPVVASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP----------IADIELPEGPRFLVGTYPWMTSLTPDN 116 (352)
T ss_pred CCceeECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcE----------EeEEccCCCchhhccCccceEEECCCC
Confidence 477765544 588999887 445555556533321 011111 000 01134489999999
Q ss_pred CEEEEEe---cCeEEEEEeCCC
Q 005546 118 SALLLIG---SDGLCVMYLYGR 136 (691)
Q Consensus 118 ~~LAl~G---~~~V~Vv~LP~~ 136 (691)
++|.+.. +..|.|+++..+
T Consensus 117 k~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 117 KTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred CEEEEecCCCCCEEEEEECCCC
Confidence 9999987 568999988654
No 68
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=68.63 E-value=20 Score=43.00 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=51.5
Q ss_pred eeeEEEeCC-CCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC----------
Q 005546 107 EVSRISINR-NGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS---------- 175 (691)
Q Consensus 107 eI~~i~lSp-sG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s---------- 175 (691)
|--.+.+.+ +..+.|++|+|.+.|-++.+-. ..-+|.++ +|+ +.-|=.|.-.|..
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~-----kvgk~~s~-----lyH----S~ciW~Ve~~p~nv~~~~~aclp 391 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVN-----KVGKCSSM-----LYH----SACIWDVENLPCNVHSPTAACLP 391 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEeccccc-----cccceeee-----eec----cceeeeeccccccccCcccccCC
Confidence 444778885 4788899999999999886431 12235444 122 2345555555531
Q ss_pred CCEEEEEecCCeEEEEeccC
Q 005546 176 DTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 176 ds~LvVLTsDn~iRlydl~~ 195 (691)
.+|.++-.+||+||+||+..
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ 411 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAF 411 (1080)
T ss_pred ccceeEecCCCcEEEeeccc
Confidence 68999999999999999974
No 69
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.69 E-value=2.2e+02 Score=32.25 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=100.3
Q ss_pred CCceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEE
Q 005546 51 APKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCV 130 (691)
Q Consensus 51 ~~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~V 130 (691)
+.+..++..+++.+...-+.+.+++..+|-.- ...+. .+.=.-+|+.|-+||+|.+||-+|.....|
T Consensus 145 g~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~------------~t~l~-e~~~~~eV~DL~FS~dgk~lasig~d~~~V 211 (398)
T KOG0771|consen 145 GQQKVVAFNGDGSKLATGGTDGTLRVWEWPSM------------LTILE-EIAHHAEVKDLDFSPDGKFLASIGADSARV 211 (398)
T ss_pred CcceEEEEcCCCCEeeeccccceEEEEecCcc------------hhhhh-hHhhcCccccceeCCCCcEEEEecCCceEE
Confidence 45667777665344444355677777776111 11111 111134899999999999999999999999
Q ss_pred EEeCCCC-----CCCCCC--ceEEEEEEecce---eeeec-CCccceEE---EEEec------------C-C--------
Q 005546 131 MYLYGRT-----CSSDNK--TIICRTVSVGSQ---IYFSS-SNVIRTLQ---VSWHP------------Y-S-------- 175 (691)
Q Consensus 131 v~LP~~~-----~~~d~~--~i~crt~~v~~~---~~~~s-~~~~~I~q---v~WHP------------~-s-------- 175 (691)
-...+.. +.+++. --.||....+.+ +.+.+ ++.-.|.+ -.||- . +
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC
Confidence 8887552 112222 223776655521 11222 23333444 35766 1 1
Q ss_pred -CCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCC-----CCceEEEEEecCCcEEE
Q 005546 176 -DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHL-----WDRFSVFVLFSDGSIYI 249 (691)
Q Consensus 176 -ds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~-----W~~~TLyiL~~~GDIYa 249 (691)
+.-+++=|.||.|-+|+... . |.....+... +.-+.+..|.|+.. -...+.-+++-..|=-.
T Consensus 292 dGkf~AlGT~dGsVai~~~~~-l----q~~~~vk~aH-------~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~ 359 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKS-L----QRLQYVKEAH-------LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTM 359 (398)
T ss_pred CCcEEEEeccCCcEEEEEece-e----eeeEeehhhh-------eeeeeeEEEcCCcCcccccccCCceeEEEEeecccc
Confidence 34556677889999999862 2 2333322111 23466667776411 01112222222112112
Q ss_pred EcccCCCCCCCChh
Q 005546 250 LCPVVPFGSVYKWE 263 (691)
Q Consensus 250 lcP~lP~~~~~~~~ 263 (691)
--+.+|+.+.++--
T Consensus 360 ~~~~~~~~~~~~~~ 373 (398)
T KOG0771|consen 360 QLHRLPKRRKIPAW 373 (398)
T ss_pred cccccccchhhhHH
Confidence 23677888877774
No 70
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.30 E-value=1.3e+02 Score=33.23 Aligned_cols=91 Identities=16% Similarity=0.260 Sum_probs=54.3
Q ss_pred eeeEEEeCCCCCEEEEEecCeEEEEEeCCCC--CCCC-CCceEEEEEEec---------------------ceeeeecCC
Q 005546 107 EVSRISINRNGSALLLIGSDGLCVMYLYGRT--CSSD-NKTIICRTVSVG---------------------SQIYFSSSN 162 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~--~~~d-~~~i~crt~~v~---------------------~~~~~~s~~ 162 (691)
.-..+..+|.|++-++.+...|-|-.+-... .... ...+.|-++-=+ +-..|. ..
T Consensus 170 ~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-AH 248 (362)
T KOG0294|consen 170 KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFL-AH 248 (362)
T ss_pred cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeee-cc
Confidence 3445889999999999999999987774321 0000 000111111000 000111 23
Q ss_pred ccceEEEEEecCCC-CEEEEEecCCeEEEEeccCCCC
Q 005546 163 VIRTLQVSWHPYSD-THLGILSSDSVFRLFNLASDVM 198 (691)
Q Consensus 163 ~~~I~qv~WHP~sd-s~LvVLTsDn~iRlydl~~~~~ 198 (691)
.-+|+.+...-.-+ .-||...||+.|++||++-+..
T Consensus 249 ~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 249 ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred hhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 45788877666653 5677999999999999986533
No 71
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=66.04 E-value=20 Score=38.86 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=49.2
Q ss_pred EEEeCCC-CCEEEEE--ecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCC
Q 005546 110 RISINRN-GSALLLI--GSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDS 186 (691)
Q Consensus 110 ~i~lSps-G~~LAl~--G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn 186 (691)
++.-|++ =+|+|.+ ++..|.|+++.-. | .+|. -..++...|--+.|||.|.+||..--.|.
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P----------~--tpva----~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVP----------C--TPVA----RLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCC----------C--ccee----hhhcCcccccceEecCCCCceeeecCCcc
Confidence 4445554 3566665 4456666666411 1 1121 12356678999999999999999999999
Q ss_pred eEEEEeccCCC
Q 005546 187 VFRLFNLASDV 197 (691)
Q Consensus 187 ~iRlydl~~~~ 197 (691)
+.-+||++.-+
T Consensus 311 qaliWDl~q~~ 321 (364)
T KOG0290|consen 311 QALIWDLQQMP 321 (364)
T ss_pred eEEEEeccccc
Confidence 99999998543
No 72
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.94 E-value=70 Score=35.07 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=72.0
Q ss_pred eeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEE-EEEecceeeeecCCccceEEEEEe-cCCCCEEEEEec
Q 005546 108 VSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICR-TVSVGSQIYFSSSNVIRTLQVSWH-PYSDTHLGILSS 184 (691)
Q Consensus 108 I~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~cr-t~~v~~~~~~~s~~~~~I~qv~WH-P~sds~LvVLTs 184 (691)
|+-++.+..|+.+|-... .+|.|-++-+..+ .-.|. .+.. ++..|.+|.|- |.-+..+.+-.-
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----~W~~Ts~Wra---------h~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----TWSCTSSWRA---------HDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCC-----ceEEeeeEEe---------cCCcEEEEEecCccccceEEEEec
Confidence 788999999999998755 5788887743322 23332 1211 34569999995 555999999999
Q ss_pred CCeEEEEeccCCCCC-CcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCc
Q 005546 185 DSVFRLFNLASDVMQ-PEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGS 246 (691)
Q Consensus 185 Dn~iRlydl~~~~~~-p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GD 246 (691)
|.++++|+=+.+..+ +..+.... .+...+...+.+.+|+|.+. ++-|-.+..||-
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~-----ttl~DsrssV~DV~FaP~hl--GLklA~~~aDG~ 137 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRR-----TTLVDSRSSVTDVKFAPKHL--GLKLAAASADGI 137 (361)
T ss_pred CCceeeeeecccccccccceeEEE-----EEeecCCcceeEEEecchhc--ceEEEEeccCcE
Confidence 999999997532221 11111110 01111223589999999643 333344445663
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=64.93 E-value=31 Score=37.76 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=65.2
Q ss_pred CceEEecCCCCceeeeEEEeCCCCCEEEEEecCeE-EEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEe
Q 005546 94 PSKVMRADVKLNFEVSRISINRNGSALLLIGSDGL-CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH 172 (691)
Q Consensus 94 ~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V-~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WH 172 (691)
.+|++.- ...|+.|.+-|+|.||++-++|-+ .+-.+. ...|-.- -.|+ +.....|.+|...
T Consensus 209 A~K~~qd----~~~vrsiSfHPsGefllvgTdHp~~rlYdv~---------T~Qcfvs-anPd----~qht~ai~~V~Ys 270 (430)
T KOG0640|consen 209 AFKVFQD----TEPVRSISFHPSGEFLLVGTDHPTLRLYDVN---------TYQCFVS-ANPD----DQHTGAITQVRYS 270 (430)
T ss_pred HHHHhhc----cceeeeEeecCCCceEEEecCCCceeEEecc---------ceeEeee-cCcc----cccccceeEEEec
Confidence 4677752 247999999999999999988843 333332 2223110 0011 1123457777654
Q ss_pred cCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecC
Q 005546 173 PYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSD 244 (691)
Q Consensus 173 P~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~ 244 (691)
+- ++--|+-..|+.||+||=-.. . .... -+++ -.|.++.|.-|.-.. =|||.++
T Consensus 271 ~t-~~lYvTaSkDG~IklwDGVS~--r-----Cv~t--~~~A--H~gsevcSa~Ftkn~------kyiLsSG 324 (430)
T KOG0640|consen 271 ST-GSLYVTASKDGAIKLWDGVSN--R-----CVRT--IGNA--HGGSEVCSAVFTKNG------KYILSSG 324 (430)
T ss_pred CC-ccEEEEeccCCcEEeeccccH--H-----HHHH--HHhh--cCCceeeeEEEccCC------eEEeecC
Confidence 43 456677788999999994311 1 1110 0111 114578888888642 3666653
No 74
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=64.48 E-value=1.4e+02 Score=36.56 Aligned_cols=81 Identities=23% Similarity=0.245 Sum_probs=59.2
Q ss_pred CCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEe
Q 005546 93 FPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH 172 (691)
Q Consensus 93 ~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WH 172 (691)
-.+++|.=+. .+|..+..|++|.||.--|..+|-|+ |....+. | + |..+-++.|..+.|-
T Consensus 242 ~t~t~lHWH~---~~V~~L~fS~~G~~LlSGG~E~VLv~-----Wq~~T~~----k------q--fLPRLgs~I~~i~vS 301 (792)
T KOG1963|consen 242 ETCTLLHWHH---DEVNSLSFSSDGAYLLSGGREGVLVL-----WQLETGK----K------Q--FLPRLGSPILHIVVS 301 (792)
T ss_pred ccceEEEecc---cccceeEEecCCceEeecccceEEEE-----EeecCCC----c------c--cccccCCeeEEEEEc
Confidence 3567776432 38999999999999998888887776 6321111 1 1 233556789999999
Q ss_pred cCCCCEEEEEecCCeEEEEecc
Q 005546 173 PYSDTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 173 P~sds~LvVLTsDn~iRlydl~ 194 (691)
|.++.+.+++- ||.|.+....
T Consensus 302 ~ds~~~sl~~~-DNqI~li~~~ 322 (792)
T KOG1963|consen 302 PDSDLYSLVLE-DNQIHLIKAS 322 (792)
T ss_pred CCCCeEEEEec-CceEEEEecc
Confidence 99988877765 8999998885
No 75
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=63.86 E-value=2.3e+02 Score=31.09 Aligned_cols=129 Identities=15% Similarity=0.165 Sum_probs=76.0
Q ss_pred CCceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEE-
Q 005546 51 APKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLC- 129 (691)
Q Consensus 51 ~~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~- 129 (691)
..|+++....++.|.+||.-.. -..+.+.. | --=|-...++|+|+++|.-|=.+.+
T Consensus 66 Dsr~ivSaSqDGklIvWDs~Tt--------------------nK~haipl--~-s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTT--------------------NKVHAIPL--P-SSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccc--------------------cceeEEec--C-ceeEEEEEECCCCCeEEecCcCceeE
Confidence 3677777777899999987430 01122221 1 1235678899999999999977555
Q ss_pred EEEeCCCCCCCCCC-ceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEccc
Q 005546 130 VMYLYGRTCSSDNK-TIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQP 208 (691)
Q Consensus 130 Vv~LP~~~~~~d~~-~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~ 208 (691)
|..|-.+ |.+ .... .-.|. ....-+-.+++-+ |.||++=.-|.+.-+||+.... +.-.++.
T Consensus 123 iy~ls~~----d~~g~~~v-~r~l~-------gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~----~~~~f~G 184 (343)
T KOG0286|consen 123 IYPLSTR----DAEGNVRV-SRELA-------GHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQ----QTQVFHG 184 (343)
T ss_pred EEecccc----ccccccee-eeeec-------CccceeEEEEEcC--CCceEecCCCceEEEEEcccce----EEEEecC
Confidence 4445422 111 1111 11111 1123455666666 8999999999999999997432 2223321
Q ss_pred CCCCCCCCCCCCceEEEEecC
Q 005546 209 VEPGRYRNAASICPVDFSFGG 229 (691)
Q Consensus 209 ~~~g~s~~~s~~~avsf~FG~ 229 (691)
. ..++.+.++.|
T Consensus 185 H---------~gDV~slsl~p 196 (343)
T KOG0286|consen 185 H---------TGDVMSLSLSP 196 (343)
T ss_pred C---------cccEEEEecCC
Confidence 1 23577788877
No 76
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=63.75 E-value=34 Score=38.55 Aligned_cols=100 Identities=14% Similarity=0.260 Sum_probs=71.2
Q ss_pred EEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeC
Q 005546 55 LVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLY 134 (691)
Q Consensus 55 lla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP 134 (691)
+++|.+++.|-+||-... .+=++|. -+ ..+|+.+-=-|+-.++|..|..+ .|.|-
T Consensus 195 F~t~SdDg~ikiWdf~~~--------------------kee~vL~--GH-gwdVksvdWHP~kgLiasgskDn--lVKlW 249 (464)
T KOG0284|consen 195 FLTCSDDGTIKIWDFRMP--------------------KEERVLR--GH-GWDVKSVDWHPTKGLIASGSKDN--LVKLW 249 (464)
T ss_pred eEEecCCCeEEEEeccCC--------------------chhheec--cC-CCCcceeccCCccceeEEccCCc--eeEee
Confidence 566677888999977541 1122443 23 57899999999999999999998 56664
Q ss_pred CCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEecc
Q 005546 135 GRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 135 ~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~ 194 (691)
+..+. +..| ++ +. .+..|.++.|.|-+ .-|+.+..|-.+|+||+.
T Consensus 250 DprSg----~cl~---tl----h~---HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 250 DPRSG----SCLA---TL----HG---HKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred cCCCc----chhh---hh----hh---ccceEEEEEEcCCC-CeeEEccCCceEEEEehh
Confidence 33221 2223 11 22 23469999999999 999999999999999997
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=63.30 E-value=2.1e+02 Score=30.34 Aligned_cols=177 Identities=18% Similarity=0.182 Sum_probs=93.0
Q ss_pred EEEeCCCeEEEEECCcceEE------EEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEE-ecCeE
Q 005546 56 VAWDGASRLYYWDQNAQCLH------RISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLI-GSDGL 128 (691)
Q Consensus 56 la~~g~~~Lfvw~~n~~~l~------~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~-G~~~V 128 (691)
.+..-.+.||.+-.|...+. .+++|.+.+.+. ..+.-..+-+..-.-.|.-..-||.|.++|-= +++.|
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~----~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAK----QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCccccccccc----CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 34444688999877764333 347777754322 12222222233334578889999999999862 33456
Q ss_pred EEEEeCCCCCC---CC------CCce----------------------EEEEEEecceeeeecCCccceEEEEEecCC--
Q 005546 129 CVMYLYGRTCS---SD------NKTI----------------------ICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-- 175 (691)
Q Consensus 129 ~Vv~LP~~~~~---~d------~~~i----------------------~crt~~v~~~~~~~s~~~~~I~qv~WHP~s-- 175 (691)
-|+..+..... .| ...+ .|+.|.-+=+ .---+|-+|
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-----------~g~~~~a~sgh 182 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-----------RGQGFHALSGH 182 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-----------CCCcceeecCC
Confidence 55555433210 00 1111 2443322211 011367777
Q ss_pred CCEEEEEec-----------CCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCC-------CCCCceE
Q 005546 176 DTHLGILSS-----------DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGD-------HLWDRFS 237 (691)
Q Consensus 176 ds~LvVLTs-----------Dn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~-------~~W~~~T 237 (691)
-.|++.|++ |.+||+||+...... -.+...-++.... ...+++.|-.|. +.=+..+
T Consensus 183 tghilalyswn~~m~~sgsqdktirfwdlrv~~~v----~~l~~~~~~~gle--ssavaav~vdpsgrll~sg~~dssc~ 256 (350)
T KOG0641|consen 183 TGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCV----NTLDNDFHDGGLE--SSAVAAVAVDPSGRLLASGHADSSCM 256 (350)
T ss_pred cccEEEEEEecCcEEEccCCCceEEEEeeecccee----eeccCcccCCCcc--cceeEEEEECCCcceeeeccCCCceE
Confidence 478888876 789999999753221 1121100111111 123455555553 2225678
Q ss_pred EEEEecCCcEEEEccc
Q 005546 238 VFVLFSDGSIYILCPV 253 (691)
Q Consensus 238 LyiL~~~GDIYalcP~ 253 (691)
||=+..+--|-.++|-
T Consensus 257 lydirg~r~iq~f~ph 272 (350)
T KOG0641|consen 257 LYDIRGGRMIQRFHPH 272 (350)
T ss_pred EEEeeCCceeeeeCCC
Confidence 8888887777777765
No 78
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=62.39 E-value=2.4e+02 Score=30.72 Aligned_cols=124 Identities=10% Similarity=0.103 Sum_probs=76.4
Q ss_pred eeeeEEEeCCCCCEEEEE--ecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 106 FEVSRISINRNGSALLLI--GSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~--G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
-..+++.++|+|++|.+. |...|.+..+-...+. -.....+.+ .....-+++.|||.+.-..|+--
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~----l~~~~~~~~--------~~G~GPRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK----LTPVDSIKV--------PPGSGPRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T----EEEEEEEEC--------STTSSEEEEEE-TTSSEEEEEET
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce----EEEeecccc--------ccCCCCcEEEEcCCcCEEEEecC
Confidence 467899999999998885 8899999999633211 111233333 23445799999996655556656
Q ss_pred cCCeEEEEeccCCCCC--CcEEEEcccCCCCCCCCCCC-CceEEEEecCCCCCCceEEEEEecCCcEEEEc
Q 005546 184 SDSVFRLFNLASDVMQ--PEQEYYLQPVEPGRYRNAAS-ICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC 251 (691)
Q Consensus 184 sDn~iRlydl~~~~~~--p~q~~~L~~~~~g~s~~~s~-~~avsf~FG~~~~W~~~TLyiL~~~GDIYalc 251 (691)
-+|.|.+|++...... ..|.+...+ . +..+ ..+.++.+.++ .-.||+..++.|--+++
T Consensus 212 ~s~~v~v~~~~~~~g~~~~~~~~~~~~--~----~~~~~~~~~~i~ispd----g~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 212 LSNTVSVFDYDPSDGSLTEIQTISTLP--E----GFTGENAPAEIAISPD----GRFLYVSNRGSNSISVF 272 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESCE--T----TSCSSSSEEEEEE-TT----SSEEEEEECTTTEEEEE
T ss_pred CCCcEEEEeecccCCceeEEEEeeecc--c----cccccCCceeEEEecC----CCEEEEEeccCCEEEEE
Confidence 6799999999832222 233333322 1 1112 26888999984 55799999876644443
No 79
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=62.22 E-value=1.3e+02 Score=32.75 Aligned_cols=122 Identities=13% Similarity=0.041 Sum_probs=73.5
Q ss_pred CCceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEE
Q 005546 51 APKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCV 130 (691)
Q Consensus 51 ~~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~V 130 (691)
+-.|.+++.-++.|-+.-++.+.++.-|++.+. +-..|. . .-.|+.++++||--.||.....+|-|
T Consensus 193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----------~lysl~---a-~~~v~sl~fspnrywL~~at~~sIkI 258 (315)
T KOG0279|consen 193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----------NLYSLE---A-FDIVNSLCFSPNRYWLCAATATSIKI 258 (315)
T ss_pred ccEEEEEECCCCCEEecCCCCceEEEEEccCCc----------eeEecc---C-CCeEeeEEecCCceeEeeccCCceEE
Confidence 455667776677777776667777766765442 112232 1 23688999999999999999999999
Q ss_pred EEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 131 MYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 131 v~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
-+|-.... ...+.++..-.-.......-....|.+. +.+|.--.+||.||+|++.+
T Consensus 259 wdl~~~~~--------v~~l~~d~~g~s~~~~~~~clslaws~d-G~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 259 WDLESKAV--------VEELKLDGIGPSSKAGDPICLSLAWSAD-GQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred Eeccchhh--------hhhccccccccccccCCcEEEEEEEcCC-CcEEEeeecCCcEEEEEeec
Confidence 88853211 0111111000000011122233444332 57888889999999999863
No 80
>PRK03629 tolB translocation protein TolB; Provisional
Probab=61.15 E-value=2.8e+02 Score=31.22 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=40.4
Q ss_pred eeeEEEeCCCCCEEEEEe----cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546 107 EVSRISINRNGSALLLIG----SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G----~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
.+.....||+|+.||.+. ...+.+..+.. +. .+. +. . + . ..+....|+|.+..-+++.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~--G~-------~~~--l~-~--~---~-~~~~~~~~SPDG~~La~~~ 261 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GA-------VRQ--VA-S--F---P-RHNGAPAFSPDGSKLAFAL 261 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC--CC-------eEE--cc-C--C---C-CCcCCeEECCCCCEEEEEE
Confidence 477899999999999863 34566665531 11 111 11 0 1 0 1133578999765444444
Q ss_pred ecCC--eEEEEecc
Q 005546 183 SSDS--VFRLFNLA 194 (691)
Q Consensus 183 TsDn--~iRlydl~ 194 (691)
..++ .|.+||+.
T Consensus 262 ~~~g~~~I~~~d~~ 275 (429)
T PRK03629 262 SKTGSLNLYVMDLA 275 (429)
T ss_pred cCCCCcEEEEEECC
Confidence 5455 47777775
No 81
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=61.02 E-value=14 Score=41.60 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=53.0
Q ss_pred eeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecC
Q 005546 107 EVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD 185 (691)
.|-++.+|++|.+|+-.+.. .+.|+++- ..+ ++ +......-.|..+.|||+-.+-+++--+|
T Consensus 266 tVl~~~f~~n~N~Llt~skD~~~kv~DiR--~mk----El-----------~~~r~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 266 TVLAVKFNPNGNWLLTGSKDQSCKVFDIR--TMK----EL-----------FTYRGHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred eEEEEEEcCCCCeeEEccCCceEEEEehh--HhH----HH-----------HHhhcchhhheeeccccccccceeeccCC
Confidence 57789999999999887764 45555553 111 11 11223455789999999999999999999
Q ss_pred CeEEEEecc
Q 005546 186 SVFRLFNLA 194 (691)
Q Consensus 186 n~iRlydl~ 194 (691)
+.|-.|.+.
T Consensus 329 gsvvh~~v~ 337 (464)
T KOG0284|consen 329 GSVVHWVVG 337 (464)
T ss_pred CceEEEecc
Confidence 999999996
No 82
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.97 E-value=26 Score=43.70 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=72.8
Q ss_pred CCceEEEEeC-CCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCE-EEEEecC-e
Q 005546 51 APKNLVAWDG-ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSA-LLLIGSD-G 127 (691)
Q Consensus 51 ~~rnlla~~g-~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~-LAl~G~~-~ 127 (691)
..+|+||.-+ +++||+||=|. . + .+|..-..++ .-+|.-|.=|..=.+ ||-.++. .
T Consensus 127 ~q~nlLASGa~~geI~iWDlnn-------~-----~-------tP~~~~~~~~--~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 127 FQGNLLASGADDGEILIWDLNK-------P-----E-------TPFTPGSQAP--PSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred cCCceeeccCCCCcEEEeccCC-------c-----C-------CCCCCCCCCC--cccceEeccchhhhHHhhccCCCCC
Confidence 3678998755 89999998764 1 1 1111112222 257888888877444 4445555 4
Q ss_pred EEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCC---eEEEEeccCCCCCCcEEE
Q 005546 128 LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDS---VFRLFNLASDVMQPEQEY 204 (691)
Q Consensus 128 V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn---~iRlydl~~~~~~p~q~~ 204 (691)
+.|-+|... +++ +.+.. ......+--+.|||..-+-|+|=+.|+ +|.+||+. -...|.+++
T Consensus 186 ~~iWDlr~~------~pi----i~ls~-----~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR-~assP~k~~ 249 (1049)
T KOG0307|consen 186 AVIWDLRKK------KPI----IKLSD-----TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR-FASSPLKIL 249 (1049)
T ss_pred ceeccccCC------Ccc----ccccc-----CCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc-ccCCchhhh
Confidence 666666422 122 11211 011234667889999988888888875 78999996 466777666
Q ss_pred Ecc
Q 005546 205 YLQ 207 (691)
Q Consensus 205 ~L~ 207 (691)
.-+
T Consensus 250 ~~H 252 (1049)
T KOG0307|consen 250 EGH 252 (1049)
T ss_pred ccc
Confidence 443
No 83
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=60.70 E-value=1.8e+02 Score=36.61 Aligned_cols=157 Identities=14% Similarity=0.210 Sum_probs=88.6
Q ss_pred CceEEEEeCCCeEEEEECC--c-c--eEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec-
Q 005546 52 PKNLVAWDGASRLYYWDQN--A-Q--CLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS- 125 (691)
Q Consensus 52 ~rnlla~~g~~~Lfvw~~n--~-~--~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~- 125 (691)
.+-.++||||++.|++..- + . +..++--|.| .+..++-+++.==..|.=-|+|+++|-.-.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-------------~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~ 277 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-------------ELQSTSEPVDGLEGALSWRPSGNLIASSQRL 277 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-------------eEEeccccCCCccCCccCCCCCCEEEEEEEc
Confidence 6678999999999998764 1 1 2222222222 133333344443446778899999998754
Q ss_pred ---CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcE
Q 005546 126 ---DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQ 202 (691)
Q Consensus 126 ---~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q 202 (691)
+.|...| |- .++-.-|.+. + ......|....|.+.|+ -|.|.+.| .|.+|-.++=-=-.-|
T Consensus 278 ~~~~~VvFfE---rN------GLrhgeF~l~----~-~~~~~~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 278 PDRHDVVFFE---RN------GLRHGEFTLR----F-DPEEEKVIELAWNSDSE-ILAVWLED-RVQLWTRSNYHWYLKQ 341 (928)
T ss_pred CCCcEEEEEe---cC------CcEeeeEecC----C-CCCCceeeEEEECCCCC-EEEEEecC-CceEEEeeCCEEEEEE
Confidence 2333332 21 2233334442 1 13445789999988775 34444454 4999998741101223
Q ss_pred EEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEE
Q 005546 203 EYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 203 ~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYal 250 (691)
++.+.. +.....+.|-+. .+++|++++.+|.++..
T Consensus 342 ei~~~~----------~~~~~~~~Wdpe---~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 342 EIRFSS----------SESVNFVKWDPE---KPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEEccC----------CCCCCceEECCC---CCCEEEEEecCCcEEEE
Confidence 333311 111222666664 68999999998888544
No 84
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=60.50 E-value=92 Score=35.71 Aligned_cols=118 Identities=17% Similarity=0.257 Sum_probs=70.8
Q ss_pred eeeEEEeCCCCCEEEEEecCeEEEEEeCCCC-CCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC-CCEEEEEec
Q 005546 107 EVSRISINRNGSALLLIGSDGLCVMYLYGRT-CSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILSS 184 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~-~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s-ds~LvVLTs 184 (691)
.|+-|.++.+|.++.-.|..+-..+-+=.+. ++.+.. .+.+- +.-+.+.+.|....--+.+ ++-|.....
T Consensus 125 ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~-------~~~p~-~~f~~HtlsITDl~ig~Gg~~~rl~TaS~ 196 (476)
T KOG0646|consen 125 SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH-------SVKPL-HIFSDHTLSITDLQIGSGGTNARLYTASE 196 (476)
T ss_pred ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC-------Cccce-eeeccCcceeEEEEecCCCccceEEEecC
Confidence 6788999999999988887765554332111 221111 11111 2223455677777666765 788999999
Q ss_pred CCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEE
Q 005546 185 DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 185 Dn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYal 250 (691)
|+++|+||++.+.... ++.+ .. ...++..|-+. --+|+=+++|.||..
T Consensus 197 D~t~k~wdlS~g~LLl--ti~f---------p~-si~av~lDpae------~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLL--TITF---------PS-SIKAVALDPAE------RVVYIGTEEGKIFQN 244 (476)
T ss_pred CceEEEEEeccceeeE--EEec---------CC-cceeEEEcccc------cEEEecCCcceEEee
Confidence 9999999998652211 1211 11 22334444333 357777889999876
No 85
>KOG4328 consensus WD40 protein [Function unknown]
Probab=60.15 E-value=52 Score=37.64 Aligned_cols=96 Identities=14% Similarity=0.127 Sum_probs=62.6
Q ss_pred eEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec--CeEEEEEeCCCCCCCCCCceEEEEE
Q 005546 73 CLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS--DGLCVMYLYGRTCSSDNKTIICRTV 150 (691)
Q Consensus 73 ~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~--~~V~Vv~LP~~~~~~d~~~i~crt~ 150 (691)
.+.++++|.... .|.-+... .-.|+.+.+||--.++.+.+. +++.|-++..--++ .+++
T Consensus 302 ~f~~iD~R~~~s---------~~~~~~lh---~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K--~sp~----- 362 (498)
T KOG4328|consen 302 NFNVIDLRTDGS---------EYENLRLH---KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK--ASPF----- 362 (498)
T ss_pred ceEEEEeecCCc---------cchhhhhh---hcccceeecCCCCchheeecccCcceeeeehhhhcCC--CCcc-----
Confidence 556667776642 24444432 238999999999777666543 56667776422121 1111
Q ss_pred EecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEecc
Q 005546 151 SVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 151 ~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~ 194 (691)
+.+-.+...|..|-|-|.+++ ||+=.-||.||+||.+
T Consensus 363 ------lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 363 ------LSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred ------eecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 112234557899999999988 8888899999999985
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=60.01 E-value=54 Score=40.72 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=55.7
Q ss_pred ceeeeEEEeCCCCCEEEEEecCeEEEE-Ee---CCCCCCC------CCCceEEEEEEecceeeeecCCccceEEEEEecC
Q 005546 105 NFEVSRISINRNGSALLLIGSDGLCVM-YL---YGRTCSS------DNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPY 174 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~G~~~V~Vv-~L---P~~~~~~------d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~ 174 (691)
.-.|.=+-.||+|.|||.-+++.+..+ +. +..+... +-+..+|...-. .+...|..+.|-|
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~--------~H~~DV~Dv~Wsp- 139 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR--------GHDSDVLDVNWSP- 139 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe--------cCCCccceeccCC-
Confidence 346667779999999999999866443 11 1111100 123344444322 3556899999999
Q ss_pred CCCEEEEEecCCeEEEEeccC
Q 005546 175 SDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 175 sds~LvVLTsDn~iRlydl~~ 195 (691)
-|.-||-+.-||+|-+||...
T Consensus 140 ~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred CccEEEEecccceEEEEcccc
Confidence 678888899999999999974
No 87
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=59.75 E-value=1.8e+02 Score=32.00 Aligned_cols=87 Identities=13% Similarity=0.318 Sum_probs=59.2
Q ss_pred CCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCC--CCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEE
Q 005546 103 KLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSD--NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLG 180 (691)
Q Consensus 103 pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d--~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~Lv 180 (691)
.+.+.+|-|.+.|||.=-++..-.+=.-||-++..-+.. +-..+|..-.-+.+.. .-+|-.+.+||. ...++
T Consensus 175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~-----~yPVNai~Fhp~-~~tfa 248 (323)
T KOG1036|consen 175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI-----IYPVNAIAFHPI-HGTFA 248 (323)
T ss_pred cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceE-----EEEeceeEeccc-cceEE
Confidence 557889999999997766666555555555554431111 2245565544443322 236889999999 77888
Q ss_pred EEecCCeEEEEeccC
Q 005546 181 ILSSDSVFRLFNLAS 195 (691)
Q Consensus 181 VLTsDn~iRlydl~~ 195 (691)
+=-+|+.|-+||+..
T Consensus 249 TgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFN 263 (323)
T ss_pred ecCCCceEEEccCcc
Confidence 999999999999974
No 88
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=59.44 E-value=1.3e+02 Score=34.33 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=53.0
Q ss_pred ceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEE--EeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEe
Q 005546 95 SKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVM--YLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH 172 (691)
Q Consensus 95 yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv--~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WH 172 (691)
+++|.- . ..||=.+.+|+||+|||-.....-.|+ .++ |.. ++-+---+ ...-+|.-+.|-
T Consensus 217 ~qil~~--h-tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~------d~~-~kl~~tlv--------gh~~~V~yi~wS 278 (519)
T KOG0293|consen 217 WQILQD--H-TDEVWFLQFSHNGKYLASASKDSTAIIWIVVY------DVH-FKLKKTLV--------GHSQPVSYIMWS 278 (519)
T ss_pred hhhHhh--C-CCcEEEEEEcCCCeeEeeccCCceEEEEEEec------Ccc-eeeeeeee--------cccCceEEEEEC
Confidence 566652 2 358999999999999999887655544 222 221 22111112 223368889998
Q ss_pred cCCCCEEEEEecCCeEEEEeccC
Q 005546 173 PYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 173 P~sds~LvVLTsDn~iRlydl~~ 195 (691)
|. |..|+.--.|.++++||++.
T Consensus 279 PD-dryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 279 PD-DRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred CC-CCeEEecCchHheeeccCCc
Confidence 86 45666666777899999975
No 89
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=59.03 E-value=1.1e+02 Score=35.65 Aligned_cols=122 Identities=17% Similarity=0.285 Sum_probs=69.8
Q ss_pred eeeEEEeCCC--CCEEEEEecCeEEEEEeCCCCCCCC-CCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 107 EVSRISINRN--GSALLLIGSDGLCVMYLYGRTCSSD-NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 107 eI~~i~lSps--G~~LAl~G~~~V~Vv~LP~~~~~~d-~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
-|..+.+|+. |.+||.+-...=+++.+- .|.+.. ..+++| +| -.|.-|.|||. |.+|.|..
T Consensus 156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVW-dWqk~~~~~~vk~------------sn--e~v~~a~FHPt-d~nliit~ 219 (626)
T KOG2106|consen 156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVW-DWQKKAKLGPVKT------------SN--EVVFLATFHPT-DPNLIITC 219 (626)
T ss_pred cceeeeecccCCCceEEEecCCCccccchh-hchhhhccCccee------------cc--ceEEEEEeccC-CCcEEEEe
Confidence 3556666654 777777766666666553 222111 122222 12 24788999997 56788888
Q ss_pred cCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCC------------CCCc----eEEEEEecCCcE
Q 005546 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDH------------LWDR----FSVFVLFSDGSI 247 (691)
Q Consensus 184 sDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~------------~W~~----~TLyiL~~~GDI 247 (691)
-.+-|-+|+...+.-.-.|.+.= ++. -..+.+.+|++.. -|+. +|=-+.--+|-|
T Consensus 220 Gk~H~~Fw~~~~~~l~k~~~~fe-----k~e----kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv 290 (626)
T KOG2106|consen 220 GKGHLYFWTLRGGSLVKRQGIFE-----KRE----KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGV 290 (626)
T ss_pred CCceEEEEEccCCceEEEeeccc-----ccc----ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCce
Confidence 88999999887543322222111 111 1468889998641 2332 222223348999
Q ss_pred EEEccc
Q 005546 248 YILCPV 253 (691)
Q Consensus 248 YalcP~ 253 (691)
|+||=.
T Consensus 291 ~~L~~l 296 (626)
T KOG2106|consen 291 FSLCML 296 (626)
T ss_pred EEEEEe
Confidence 999843
No 90
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=58.60 E-value=1.9e+02 Score=32.44 Aligned_cols=74 Identities=15% Similarity=0.239 Sum_probs=46.4
Q ss_pred eeeeEEEeCCCCCEEEEEecCe--EEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 106 FEVSRISINRNGSALLLIGSDG--LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~~~--V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
-.+.-|.+|++|++||=..+++ |.|..+|... |.+..- .. -.-.+|.+..|||.+. .|.+-.
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~----------kl~eFR----RG-~~~~~IySL~Fs~ds~-~L~~sS 237 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ----------KLYEFR----RG-TYPVSIYSLSFSPDSQ-FLAASS 237 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCcc----------Eeeeee----CC-ceeeEEEEEEECCCCC-eEEEec
Confidence 3566788899999999888875 4445555331 111110 00 0123578888888776 555555
Q ss_pred cCCeEEEEeccC
Q 005546 184 SDSVFRLFNLAS 195 (691)
Q Consensus 184 sDn~iRlydl~~ 195 (691)
+..+|.+|-|+.
T Consensus 238 ~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 238 NTETVHIFKLEK 249 (391)
T ss_pred CCCeEEEEEecc
Confidence 668999999874
No 91
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=57.97 E-value=1.4e+02 Score=35.81 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=52.3
Q ss_pred ceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 105 NFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
.--|=+|.+||.++-+++--+.+ ++..+ .+. .+.|.-+.. ++ ...++|..+.|||. +.+|+.=++
T Consensus 110 gg~IWsiai~p~~~~l~IgcddG-vl~~~---s~~--p~~I~~~r~-l~-------rq~sRvLslsw~~~-~~~i~~Gs~ 174 (691)
T KOG2048|consen 110 GGAIWSIAINPENTILAIGCDDG-VLYDF---SIG--PDKITYKRS-LM-------RQKSRVLSLSWNPT-GTKIAGGSI 174 (691)
T ss_pred CcceeEEEeCCccceEEeecCCc-eEEEE---ecC--CceEEEEee-cc-------cccceEEEEEecCC-ccEEEeccc
Confidence 44688999999999988876777 33333 222 222321111 11 23579999999996 467888999
Q ss_pred CCeEEEEeccC
Q 005546 185 DSVFRLFNLAS 195 (691)
Q Consensus 185 Dn~iRlydl~~ 195 (691)
|+.||+||+.+
T Consensus 175 Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 175 DGVIRIWDVKS 185 (691)
T ss_pred CceEEEEEcCC
Confidence 99999999985
No 92
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=56.71 E-value=91 Score=33.70 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=53.2
Q ss_pred eeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCC
Q 005546 107 EVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDS 186 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn 186 (691)
-||.+.-||.|+|||...=....++ |.+. .+...|-.. | ..+...|+.|.|-+ ++..|.+-+-|-
T Consensus 63 sVRsvAwsp~g~~La~aSFD~t~~I-----w~k~-~~efecv~~-l-------EGHEnEVK~Vaws~-sG~~LATCSRDK 127 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASASFDATVVI-----WKKE-DGEFECVAT-L-------EGHENEVKCVAWSA-SGNYLATCSRDK 127 (312)
T ss_pred eeeeeeecCCCcEEEEeeccceEEE-----eecC-CCceeEEee-e-------eccccceeEEEEcC-CCCEEEEeeCCC
Confidence 6899999999998887654444443 3221 335566222 2 24566899999976 467899999999
Q ss_pred eEEEEeccC
Q 005546 187 VFRLFNLAS 195 (691)
Q Consensus 187 ~iRlydl~~ 195 (691)
.+=+|+++-
T Consensus 128 SVWiWe~de 136 (312)
T KOG0645|consen 128 SVWIWEIDE 136 (312)
T ss_pred eEEEEEecC
Confidence 999999983
No 93
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.28 E-value=1.1e+02 Score=35.21 Aligned_cols=74 Identities=19% Similarity=0.336 Sum_probs=44.3
Q ss_pred CceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEec
Q 005546 94 PSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHP 173 (691)
Q Consensus 94 ~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP 173 (691)
..|-+-. ..+-++.|..||||++++|.|...-.|..-. + .+-+.+ | .=..+.|++
T Consensus 24 ~~k~lg~---~~~~p~~ls~npngr~v~V~g~geY~iyt~~---~------~r~k~~--G-----------~g~~~vw~~ 78 (443)
T PF04053_consen 24 SVKELGS---CEIYPQSLSHNPNGRFVLVCGDGEYEIYTAL---A------WRNKAF--G-----------SGLSFVWSS 78 (443)
T ss_dssp --EEEEE----SS--SEEEE-TTSSEEEEEETTEEEEEETT---T------TEEEEE--E-----------E-SEEEE-T
T ss_pred EeccCCC---CCcCCeeEEECCCCCEEEEEcCCEEEEEEcc---C------Cccccc--C-----------ceeEEEEec
Confidence 3555542 2456899999999999999999998888711 1 111111 1 125677988
Q ss_pred CCCCEEEEEecCCeEEEE-ecc
Q 005546 174 YSDTHLGILSSDSVFRLF-NLA 194 (691)
Q Consensus 174 ~sds~LvVLTsDn~iRly-dl~ 194 (691)
.+..+|+.+++.|++| |++
T Consensus 79 --~n~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 79 --RNRYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp --SSEEEEE-TTS-EEEEETTE
T ss_pred --CccEEEEECCCeEEEEEcCc
Confidence 5669999999999996 443
No 94
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=55.76 E-value=76 Score=34.69 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=54.0
Q ss_pred eeeEEEeCCC-CCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEE-ecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 107 EVSRISINRN-GSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVS-VGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 107 eI~~i~lSps-G~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~-v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
.|..+.+-++ |+|+.-=|.. .+.|.+|-...-+ +.+.+.||..- |+-+ |- ....-.|-.+.|+|.-.+....=.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~-e~s~li~k~~c~v~~~-h~-~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY-EASGLIAKHKCIVAKQ-HE-NGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccch-hhccceeheeeecccc-CC-ccceeeeeeeEEeeecCceeeccc
Confidence 4556666666 6666655555 4566677533222 34445566554 4432 32 345667999999999866666556
Q ss_pred cCCeEEEEecc
Q 005546 184 SDSVFRLFNLA 194 (691)
Q Consensus 184 sDn~iRlydl~ 194 (691)
=|-++++||.+
T Consensus 122 FDhtlKVWDtn 132 (397)
T KOG4283|consen 122 FDHTLKVWDTN 132 (397)
T ss_pred ccceEEEeecc
Confidence 68999999986
No 95
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=54.89 E-value=26 Score=41.99 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=46.8
Q ss_pred eeeeEEEeCCCCCEEEEEecCeE-EEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC--CCEEEEE
Q 005546 106 FEVSRISINRNGSALLLIGSDGL-CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--DTHLGIL 182 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~~~V-~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s--ds~LvVL 182 (691)
-.|..+.+||+|+|||.-++.++ .|=+|+... .+ . + ++. ....|-.+.| | +.+||+=
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~------~v-------~-~-l~~--Ht~ti~SlsF---S~dg~vLasg 637 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANGS------LV-------K-Q-LKG--HTGTIYSLSF---SRDGNVLASG 637 (707)
T ss_pred CceEEEEEcCCCceEeecccCCcEEEEEcCCCc------ch-------h-h-hhc--ccCceeEEEE---ecCCCEEEec
Confidence 47899999999999999888654 445555211 00 0 0 111 1223455555 4 5788999
Q ss_pred ecCCeEEEEeccC
Q 005546 183 SSDSVFRLFNLAS 195 (691)
Q Consensus 183 TsDn~iRlydl~~ 195 (691)
-.||+||+||+.+
T Consensus 638 g~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 638 GADNSVRLWDLTK 650 (707)
T ss_pred CCCCeEEEEEchh
Confidence 9999999999975
No 96
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=54.74 E-value=28 Score=37.78 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=56.5
Q ss_pred eeeeEEEeCCC-CCEEEEEec--------CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCC
Q 005546 106 FEVSRISINRN-GSALLLIGS--------DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSD 176 (691)
Q Consensus 106 feI~~i~lSps-G~~LAl~G~--------~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sd 176 (691)
-||..|.-+|. .+.||-+-. ++..|-.||..-+..+..++.|-+ .++ +. .-.+|..+.|||.++
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~-~Ld-te-----avg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA-SLD-TE-----AVGKINCVEWEPNSD 136 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh-cCC-HH-----HhCceeeEEEcCCCC
Confidence 58999998887 455554432 688899999775443344444422 233 11 223799999999887
Q ss_pred CEEEEEecCCeEEEEeccCCCC
Q 005546 177 THLGILSSDSVFRLFNLASDVM 198 (691)
Q Consensus 177 s~LvVLTsDn~iRlydl~~~~~ 198 (691)
.+..+- ||.|-+|+++.+.+
T Consensus 137 klasm~--dn~i~l~~l~ess~ 156 (370)
T KOG1007|consen 137 KLASMD--DNNIVLWSLDESSK 156 (370)
T ss_pred eeEEec--cCceEEEEcccCcc
Confidence 766654 89999999985444
No 97
>PRK02889 tolB translocation protein TolB; Provisional
Probab=54.24 E-value=1.2e+02 Score=34.17 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=46.5
Q ss_pred eeeEEEeCCCCCEEEEEec----CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546 107 EVSRISINRNGSALLLIGS----DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~----~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
.+.....||+|+.||.... ..|.+..+... . ++ .+. ... ..+....|+|.+..-++.+
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g-------~--~~--~l~------~~~-g~~~~~~~SPDG~~la~~~ 258 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG-------R--RR--VVA------NFK-GSNSAPAWSPDGRTLAVAL 258 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCC-------C--EE--Eee------cCC-CCccceEECCCCCEEEEEE
Confidence 4567889999999998753 34777666421 1 11 111 011 1234678999876655667
Q ss_pred ecCCeEEEEeccCCCC
Q 005546 183 SSDSVFRLFNLASDVM 198 (691)
Q Consensus 183 TsDn~iRlydl~~~~~ 198 (691)
..|+..++|.++.+..
T Consensus 259 ~~~g~~~Iy~~d~~~~ 274 (427)
T PRK02889 259 SRDGNSQIYTVNADGS 274 (427)
T ss_pred ccCCCceEEEEECCCC
Confidence 7888888888765443
No 98
>PRK03629 tolB translocation protein TolB; Provisional
Probab=52.73 E-value=3.8e+02 Score=30.16 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=42.0
Q ss_pred eeEEEeCCCCCEEEEEec----CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 108 VSRISINRNGSALLLIGS----DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 108 I~~i~lSpsG~~LAl~G~----~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
+.....||+|+.|++... ..|.++.+... . ++ ++ +.. ...+....|+|.+. .|+...
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg-------~--~~--~l------t~~-~~~~~~~~wSPDG~-~I~f~s 305 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-------Q--IR--QV------TDG-RSNNTEPTWFPDSQ-NLAYTS 305 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC-------C--EE--Ec------cCC-CCCcCceEECCCCC-EEEEEe
Confidence 345789999999998733 45777776421 1 11 11 111 12456788999764 344333
Q ss_pred c-CCeEEEEeccCCCC
Q 005546 184 S-DSVFRLFNLASDVM 198 (691)
Q Consensus 184 s-Dn~iRlydl~~~~~ 198 (691)
. ++..++|.++.+..
T Consensus 306 ~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 306 DQAGRPQVYKVNINGG 321 (429)
T ss_pred CCCCCceEEEEECCCC
Confidence 3 45677886654443
No 99
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=52.60 E-value=1.7e+02 Score=32.75 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=49.5
Q ss_pred eeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC----------
Q 005546 107 EVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS---------- 175 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s---------- 175 (691)
=|+-+.+|.+|+++|-.+. .+|.|=.+-.+ .|+..- ......|..+.|-|.+
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~---------~~k~~l--------R~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATK---------QCKAEL--------REHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccc---------hhhhhh--------hccccceEEEEecccccCcchhhccC
Confidence 4788899999999998766 46777655533 132220 0223456677776664
Q ss_pred ----CCEEEEEecCCeEEEEeccC
Q 005546 176 ----DTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 176 ----ds~LvVLTsDn~iRlydl~~ 195 (691)
+..|+...-|.+||+||++.
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred CCCCccEEEeecccceEEEEeccC
Confidence 13788999999999999985
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=51.35 E-value=38 Score=39.25 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=46.4
Q ss_pred eeeEEEeCCCCCEEEEEecCeE-EEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEE--Ee
Q 005546 107 EVSRISINRNGSALLLIGSDGL-CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGI--LS 183 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~~V-~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvV--LT 183 (691)
+|..+..|++|.+||-=|.... .|-.. .+..++ ++.......|+-+.|+|+..+-|++ =+
T Consensus 303 eVCgLkws~d~~~lASGgnDN~~~Iwd~------~~~~p~-----------~~~~~H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLASGGNDNVVFIWDG------LSPEPK-----------FTFTEHTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred eeeeeEECCCCCeeccCCCccceEeccC------CCcccc-----------EEEeccceeeeEeeeCCCccCceEEcCCC
Confidence 5667777777777777666533 33222 111111 1222445689999999998766664 47
Q ss_pred cCCeEEEEeccC
Q 005546 184 SDSVFRLFNLAS 195 (691)
Q Consensus 184 sDn~iRlydl~~ 195 (691)
.|.+||+||+..
T Consensus 366 ~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 366 ADRCIKFWNTNT 377 (484)
T ss_pred cccEEEEEEcCC
Confidence 899999999974
No 101
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=50.69 E-value=1.8e+02 Score=32.67 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=46.7
Q ss_pred eeeEEEeCCCCCEEEEEecC--eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 107 EVSRISINRNGSALLLIGSD--GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~--~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
+|..-.-|.||...+..|++ +|-+.+++.. .| -++|. ....-|+.+++||.| -.|+=..+
T Consensus 293 ~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---------~c-L~tL~-------ghdnwVr~~af~p~G-kyi~ScaD 354 (406)
T KOG0295|consen 293 SISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---------MC-LFTLV-------GHDNWVRGVAFSPGG-KYILSCAD 354 (406)
T ss_pred chhhccCCCCCccEEEeecccceEEEEeccCC---------eE-EEEEe-------cccceeeeeEEcCCC-eEEEEEec
Confidence 55555666667777777764 5666666511 24 22232 233469999999976 45666678
Q ss_pred CCeEEEEeccC
Q 005546 185 DSVFRLFNLAS 195 (691)
Q Consensus 185 Dn~iRlydl~~ 195 (691)
|.+||+||++.
T Consensus 355 Dktlrvwdl~~ 365 (406)
T KOG0295|consen 355 DKTLRVWDLKN 365 (406)
T ss_pred CCcEEEEEecc
Confidence 99999999974
No 102
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=50.04 E-value=2.4e+02 Score=34.38 Aligned_cols=78 Identities=15% Similarity=0.300 Sum_probs=48.4
Q ss_pred eeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecC-CccceEEEEEecCCCCEEEEEec
Q 005546 107 EVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSS-NVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~-~~~~I~qv~WHP~sds~LvVLTs 184 (691)
=|+.+...|+|.+. |+|+ .+.|.+..-..- .+ --.+.|..+ -..+ ..-+|.-.-++|..-.-|+|-++
T Consensus 453 lITAvcy~PdGk~a-vIGt~~G~C~fY~t~~l------k~-~~~~~I~~~--~~Kk~~~~rITG~Q~~p~~~~~vLVTSn 522 (712)
T KOG0283|consen 453 LITAVCYSPDGKGA-VIGTFNGYCRFYDTEGL------KL-VSDFHIRLH--NKKKKQGKRITGLQFFPGDPDEVLVTSN 522 (712)
T ss_pred hheeEEeccCCceE-EEEEeccEEEEEEccCC------eE-EEeeeEeec--cCccccCceeeeeEecCCCCCeEEEecC
Confidence 47799999999875 5555 456555443110 00 112222211 1111 22268888888888568889999
Q ss_pred CCeEEEEecc
Q 005546 185 DSVFRLFNLA 194 (691)
Q Consensus 185 Dn~iRlydl~ 194 (691)
|+.|||||+.
T Consensus 523 DSrIRI~d~~ 532 (712)
T KOG0283|consen 523 DSRIRIYDGR 532 (712)
T ss_pred CCceEEEecc
Confidence 9999999994
No 103
>KOG4328 consensus WD40 protein [Function unknown]
Probab=49.88 E-value=96 Score=35.58 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=70.8
Q ss_pred eeeEEEeCCCCC-EEEEEecC--eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 107 EVSRISINRNGS-ALLLIGSD--GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 107 eI~~i~lSpsG~-~LAl~G~~--~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
.|..+.+-|+-+ -|.++|++ +|-+..+- .-..|...+ ++|+ ..+.+|-...+.|...+++.-..
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~--~~~~d~d~v----------~~f~-~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFG--TQEKDKDGV----------YLFT-PHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecC--CCCCccCce----------EEec-cCCccccceEecCCChhheeeec
Confidence 455666666655 56666665 34443332 001111111 1344 34568999999999999999999
Q ss_pred cCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEE
Q 005546 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIY 248 (691)
Q Consensus 184 sDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIY 248 (691)
.|++||+-|+..... +..+.++..+.+++--.+.-+=.+.=||. .||-|++|-+..+|.=|
T Consensus 255 yDGtiR~~D~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~--~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGD--NVGNFNVIDLRTDGSEY 315 (498)
T ss_pred cCceeeeeeecchhh--HHHhhcCccceeeeeccccCCCccEEEee--cccceEEEEeecCCccc
Confidence 999999999975322 21223321111111100011112334454 68899999999888644
No 104
>PRK04792 tolB translocation protein TolB; Provisional
Probab=49.40 E-value=4e+02 Score=30.27 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=40.9
Q ss_pred eeeEEEeCCCCCEEEEEe----cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546 107 EVSRISINRNGSALLLIG----SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G----~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
.+.....||+|+.||... ...|.++.+-. + .. + .+. .+ .. ......|.|.+..-+++.
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t--g-----~~--~--~lt---~~---~g-~~~~~~wSPDG~~La~~~ 280 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT--Q-----VR--E--KVT---SF---PG-INGAPRFSPDGKKLALVL 280 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCC--C-----Ce--E--Eec---CC---CC-CcCCeeECCCCCEEEEEE
Confidence 466788999999999873 33577776641 1 11 1 111 01 11 123568999876555567
Q ss_pred ecCCeEEEEecc
Q 005546 183 SSDSVFRLFNLA 194 (691)
Q Consensus 183 TsDn~iRlydl~ 194 (691)
..|+..++|-++
T Consensus 281 ~~~g~~~Iy~~d 292 (448)
T PRK04792 281 SKDGQPEIYVVD 292 (448)
T ss_pred eCCCCeEEEEEE
Confidence 777765555443
No 105
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=48.91 E-value=97 Score=36.76 Aligned_cols=69 Identities=25% Similarity=0.292 Sum_probs=49.4
Q ss_pred eeeEEEeCCCCCEEEEEecCe-EEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecC
Q 005546 107 EVSRISINRNGSALLLIGSDG-LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~~-V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD 185 (691)
.|+.|.+.|.|..||-=|+.+ |.|-++-. + ...|++++++ .|.+|.|.|.++.|++....+
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~T--g------Rcvr~~~~d~----------~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIAT--G------RCVRTVQFDS----------EIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeec--c------eEEEEEeecc----------eeEEEEecCCCCceeEEEEec
Confidence 688999999999998766654 56666641 1 1136665653 589999999999888877777
Q ss_pred CeEEEEec
Q 005546 186 SVFRLFNL 193 (691)
Q Consensus 186 n~iRlydl 193 (691)
+++-+-|-
T Consensus 464 ~~~~ivnp 471 (733)
T KOG0650|consen 464 ECVLIVNP 471 (733)
T ss_pred CceEEeCc
Confidence 77555443
No 106
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=48.81 E-value=77 Score=35.11 Aligned_cols=60 Identities=28% Similarity=0.591 Sum_probs=45.6
Q ss_pred ceEEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEE
Q 005546 53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMY 132 (691)
Q Consensus 53 rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~ 132 (691)
-+|+.|.|+.+||+|.+... +... +|--.|.|..+.-+-+|.+++|.|...-++..
T Consensus 374 prL~vctg~srLY~W~psg~-----------------------~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc~a~ 429 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSGP-----------------------RVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFCVAI 429 (447)
T ss_pred ceEEEEcCCceEEEEcCCCc-----------------------eEEe-cCCCCceeeeEEecCCCcEEEEEcCCceEEEE
Confidence 35666778889999977541 1222 12226999999999999999999999999998
Q ss_pred eCCC
Q 005546 133 LYGR 136 (691)
Q Consensus 133 LP~~ 136 (691)
+++.
T Consensus 430 ve~e 433 (447)
T KOG4497|consen 430 VEDE 433 (447)
T ss_pred ecCC
Confidence 8855
No 107
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=47.89 E-value=1.4e+02 Score=34.80 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=50.1
Q ss_pred eeeeEEEeCCCCCEEEE-Ee--cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546 106 FEVSRISINRNGSALLL-IG--SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl-~G--~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
-+|..|+-|+..+=++. .| ...|.|-..|.- + +...+ ..+..+|....|-|. +..+++-
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---------~-~~~~l-------~gH~~RVl~la~SPd-g~~i~t~ 449 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---------K-LVAEL-------LGHTSRVLYLALSPD-GETIVTG 449 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---------c-eeeee-------cCCcceeEEEEECCC-CCEEEEe
Confidence 47899999999865555 33 346666666621 0 11111 134568999999998 6788999
Q ss_pred ecCCeEEEEeccC
Q 005546 183 SSDSVFRLFNLAS 195 (691)
Q Consensus 183 TsDn~iRlydl~~ 195 (691)
..|.+||+|++..
T Consensus 450 a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 450 AADETLRFWNLFD 462 (484)
T ss_pred cccCcEEeccccC
Confidence 9999999999973
No 108
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=47.72 E-value=48 Score=26.09 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=27.5
Q ss_pred CccceEEEEEecCCCCEEEEEecCCeEEEEecc
Q 005546 162 NVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 162 ~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~ 194 (691)
...+|..+.|.|..| -|++.|.|+.|.+|.++
T Consensus 10 l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 345699999999987 77799999999999984
No 109
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=47.36 E-value=1.6e+02 Score=35.99 Aligned_cols=86 Identities=9% Similarity=0.149 Sum_probs=58.1
Q ss_pred ceeeeEEEeC-------CCCCEEEEEecCeEEEEE--eCCCC-CCCC-CCceEEEEEEecceeeeecCCccceEEEEEec
Q 005546 105 NFEVSRISIN-------RNGSALLLIGSDGLCVMY--LYGRT-CSSD-NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHP 173 (691)
Q Consensus 105 ~feI~~i~lS-------psG~~LAl~G~~~V~Vv~--LP~~~-~~~d-~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP 173 (691)
...|+||.+. +..++|++-....++|+. +.... .... ...|.. -+|. ++.+..-.+.+...|.++|
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~--~~l~-~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDP--NPLL-TISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCcccccc--ceeE-EechhhcCCCccceEEecc
Confidence 4579999998 344799999999999998 22110 0000 111111 1111 1222223556789999999
Q ss_pred CCCCEEEEEecCCeEEEEec
Q 005546 174 YSDTHLGILSSDSVFRLFNL 193 (691)
Q Consensus 174 ~sds~LvVLTsDn~iRlydl 193 (691)
+...-++|+-..|.+-+|++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred CccceEEEEeccCcEEEEEe
Confidence 99889999999999999999
No 110
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=47.36 E-value=1.3e+02 Score=34.16 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=55.1
Q ss_pred eeeeEEEeCCCCCEEEEEecC---------eEEEEEeCCCCCC---CCCCceEEEEEEecceeeeecC------------
Q 005546 106 FEVSRISINRNGSALLLIGSD---------GLCVMYLYGRTCS---SDNKTIICRTVSVGSQIYFSSS------------ 161 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~~---------~V~Vv~LP~~~~~---~d~~~i~crt~~v~~~~~~~s~------------ 161 (691)
-.|..|.+|.||++||-=|+. ++.|-..|+..+- .-.+.|.|-.|.++.+.+|+..
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET 136 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc
Confidence 478899999999999877663 1112223433311 1134567777777655333211
Q ss_pred -----------CccceEEEEEecCCCCEEEEEecCCeEEEEecc
Q 005546 162 -----------NVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 162 -----------~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~ 194 (691)
....|-...-||. |..|++.|.|+.+-+||+.
T Consensus 137 ~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 137 KQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred ceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEecc
Confidence 1223445555666 8899999999999999986
No 111
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=47.24 E-value=59 Score=36.17 Aligned_cols=91 Identities=12% Similarity=0.142 Sum_probs=55.4
Q ss_pred eeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEE-EEecc-e--eeeecCCccceEEEEEecCC-CCEEEE
Q 005546 107 EVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRT-VSVGS-Q--IYFSSSNVIRTLQVSWHPYS-DTHLGI 181 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt-~~v~~-~--~~~~s~~~~~I~qv~WHP~s-ds~LvV 181 (691)
-|..|..+.+|.+||. |.++=.|+..-+.-.+ .+ ..+-.+ ++-.+ . ++-.-.-.-.|.+++|++-+ ..+.++
T Consensus 27 iis~vef~~~Ge~Lat-GdkgGRVv~f~r~~~~-~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 27 IISAVEFDHYGERLAT-GDKGGRVVLFEREKLY-KG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred ceeeEEeecccceEee-cCCCCeEEEeeccccc-cc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 3778999999999995 6666555544322211 11 111111 11100 0 00000123468999999998 689999
Q ss_pred EecCCeEEEEeccCCCCCC
Q 005546 182 LSSDSVFRLFNLASDVMQP 200 (691)
Q Consensus 182 LTsDn~iRlydl~~~~~~p 200 (691)
-|+|-+|++|-+.....++
T Consensus 104 stNdktiKlWKi~er~~k~ 122 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKK 122 (433)
T ss_pred ecCCcceeeeeeecccccc
Confidence 9999999999998544433
No 112
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=46.75 E-value=1.5e+02 Score=33.17 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=26.3
Q ss_pred eeeeEEEeCCCCCEEEEEec-CeEEEEEeCC
Q 005546 106 FEVSRISINRNGSALLLIGS-DGLCVMYLYG 135 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~ 135 (691)
-.|.+|.++|++.||+..|+ .+|||..|-.
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 37899999999999999876 6999999944
No 113
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=46.25 E-value=89 Score=34.48 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 165 RTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 165 ~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
-|..|.+-+. +.|++--.+|+++|+|+...
T Consensus 350 yvn~a~ft~d-G~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 350 YVNEATFTDD-GHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred cccceEEcCC-CCeEEEecCCccEEEecCcc
Confidence 3444444332 46788889999999999864
No 114
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=45.89 E-value=63 Score=37.77 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=44.9
Q ss_pred EEEeCCCCCEEEEEecC----eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec-
Q 005546 110 RISINRNGSALLLIGSD----GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS- 184 (691)
Q Consensus 110 ~i~lSpsG~~LAl~G~~----~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs- 184 (691)
.+..||.|++++|+|=- .+.|.+.+.+- .| -.+... .-.=+.|||.|.-.|..-|+
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K------~i--~~~~a~-----------~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK------LI--AKFKAA-----------NTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchh------hc--cccccC-----------CceEEEEcCCCcEEEEEeccc
Confidence 78899999999999854 56666665331 00 011111 11335699999877777777
Q ss_pred ----CCeEEEEecc
Q 005546 185 ----DSVFRLFNLA 194 (691)
Q Consensus 185 ----Dn~iRlydl~ 194 (691)
||-++||+.+
T Consensus 377 RlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYT 390 (566)
T ss_pred cEEecCCeEEEEec
Confidence 9999999986
No 115
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=45.76 E-value=4.9e+02 Score=29.37 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=27.0
Q ss_pred CccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 162 NVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 162 ~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
....|.|..|-+ ...|..=+.|++||.||...
T Consensus 326 he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 326 HEDGVTKLKWLN--TDYLLTACANGKVRQWDART 357 (399)
T ss_pred CCCceEEEEEcC--cchheeeccCceEEeeeccc
Confidence 445688888888 77888999999999999975
No 116
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=45.75 E-value=1.7e+02 Score=33.21 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=43.5
Q ss_pred EEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 121 LLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 121 Al~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
.+..+..+.++.-|..--+ .....+|.+. + ...+..|..+.|-| -+++||.=.-|+++|+||+..
T Consensus 82 ~v~te~~l~lvyqpqavfr-vrpvtrCssS-~-------~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~T 146 (480)
T KOG0271|consen 82 NVSTEDVLTLVYQPQAVFR-VRPVTRCSSS-I-------AGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDT 146 (480)
T ss_pred ccchhheeeEEeccchhhc-ccccceeccc-c-------CCCCCcEEEEEecC-CCceEEecCCCceEEeeccCC
Confidence 3556677888887733111 1222335322 1 23566899999999 668899999999999999964
No 117
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=45.72 E-value=56 Score=25.72 Aligned_cols=32 Identities=28% Similarity=0.181 Sum_probs=26.5
Q ss_pred CCceeeeEEEeCCCCCEEEEEecCe-EEEEEeC
Q 005546 103 KLNFEVSRISINRNGSALLLIGSDG-LCVMYLY 134 (691)
Q Consensus 103 pl~feI~~i~lSpsG~~LAl~G~~~-V~Vv~LP 134 (691)
.+..+|..+.-||+.+++|+...++ |.|-++.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3456799999999999999998875 8888773
No 118
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=45.14 E-value=1.1e+02 Score=34.67 Aligned_cols=69 Identities=16% Similarity=0.292 Sum_probs=41.7
Q ss_pred eeeEEEeCCCCCEEEEEecCeE-EEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecC
Q 005546 107 EVSRISINRNGSALLLIGSDGL-CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~~V-~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD 185 (691)
.+.+|.+||||++||+++..+. .|+ . + |-....| .+.++ .....+|+.|- |+.++++-. +
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~--s---s--Df~~~~~-e~~~~--------~~~~p~~~~WC--G~dav~l~~-~ 278 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVV--S---S--DFSEKLC-EFDTD--------SKSPPKQMAWC--GNDAVVLSW-E 278 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEE--E---C--cccceeE-EeecC--------cCCCCcEEEEE--CCCcEEEEe-C
Confidence 5899999999999999988644 343 1 1 2112223 12221 23456899985 444555444 5
Q ss_pred CeEEEEecc
Q 005546 186 SVFRLFNLA 194 (691)
Q Consensus 186 n~iRlydl~ 194 (691)
+.+.++.-.
T Consensus 279 ~~l~lvg~~ 287 (410)
T PF04841_consen 279 DELLLVGPD 287 (410)
T ss_pred CEEEEECCC
Confidence 677777643
No 119
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=43.82 E-value=93 Score=34.35 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=52.9
Q ss_pred eeEEEeCCCCCEEEEE-ecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCC
Q 005546 108 VSRISINRNGSALLLI-GSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDS 186 (691)
Q Consensus 108 I~~i~lSpsG~~LAl~-G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn 186 (691)
-.-+.+|+.|+|||+= .+-.|.|-++-.+. + .|++ +.+-.+|..+.|-|.+ .-|+.-..|+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------i-ar~l---------saH~~pi~sl~WS~dg-r~LltsS~D~ 87 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------I-ARML---------SAHVRPITSLCWSRDG-RKLLTSSRDW 87 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------h-hhhh---------hccccceeEEEecCCC-CEeeeecCCc
Confidence 5578899999999994 44455555554221 0 1111 1223468888887654 4566777899
Q ss_pred eEEEEeccCCCCCCcEEEEccc
Q 005546 187 VFRLFNLASDVMQPEQEYYLQP 208 (691)
Q Consensus 187 ~iRlydl~~~~~~p~q~~~L~~ 208 (691)
.|.+||+.. +. |.+.+.++.
T Consensus 88 si~lwDl~~-gs-~l~rirf~s 107 (405)
T KOG1273|consen 88 SIKLWDLLK-GS-PLKRIRFDS 107 (405)
T ss_pred eeEEEeccC-CC-ceeEEEccC
Confidence 999999974 33 778888753
No 120
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=43.79 E-value=3.1e+02 Score=33.32 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=56.4
Q ss_pred eeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCC
Q 005546 107 EVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDS 186 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn 186 (691)
.|--+.+||-|-|-|=.|..+.+-+ |+-.-..+. ++|. .+-..|-.|.+||-+. .+..=.+|-
T Consensus 495 PVwdV~F~P~GyYFatas~D~tArL-----Ws~d~~~Pl---------Rifa--ghlsDV~cv~FHPNs~-Y~aTGSsD~ 557 (707)
T KOG0263|consen 495 PVWDVQFAPRGYYFATASHDQTARL-----WSTDHNKPL---------RIFA--GHLSDVDCVSFHPNSN-YVATGSSDR 557 (707)
T ss_pred ceeeEEecCCceEEEecCCCceeee-----eecccCCch---------hhhc--ccccccceEEECCccc-ccccCCCCc
Confidence 4455569999999999988777733 543111111 1122 2234688899999981 111227899
Q ss_pred eEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCC
Q 005546 187 VFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGD 230 (691)
Q Consensus 187 ~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~ 230 (691)
++|+||+..... .-.| .. . -..+.+.+|+|.
T Consensus 558 tVRlWDv~~G~~--VRiF--~G-H--------~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 558 TVRLWDVSTGNS--VRIF--TG-H--------KGPVTALAFSPC 588 (707)
T ss_pred eEEEEEcCCCcE--EEEe--cC-C--------CCceEEEEEcCC
Confidence 999999985432 1122 11 1 125788888884
No 121
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=43.73 E-value=1.4e+02 Score=34.09 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=24.9
Q ss_pred eeeeEEEeCCCCCEEEE-EecCeEEEEEeCCC
Q 005546 106 FEVSRISINRNGSALLL-IGSDGLCVMYLYGR 136 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl-~G~~~V~Vv~LP~~ 136 (691)
-.|..+.+|.+|+|..+ .-+++++.=.|-++
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 36889999999999887 46788888887643
No 122
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=43.55 E-value=3.3e+02 Score=30.38 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=38.1
Q ss_pred CCeEEEEECCc----ceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec-----------
Q 005546 61 ASRLYYWDQNA----QCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS----------- 125 (691)
Q Consensus 61 ~~~Lfvw~~n~----~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~----------- 125 (691)
..++|+.|... +.++++|. ...+++.. .++.+-.+.+ +||+|++|.++..
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~-------------~~~~v~g~-i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~ 76 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDG-------------EAGRVLGM-TDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRT 76 (352)
T ss_pred CCEEEEECCcccccCceEEEEEC-------------CCCEEEEE-EEccCCCcee-ECCCCCEEEEEeccccccccCCCC
Confidence 35667766652 56666663 22445442 3456667775 9999999999876
Q ss_pred CeEEEEEeC
Q 005546 126 DGLCVMYLY 134 (691)
Q Consensus 126 ~~V~Vv~LP 134 (691)
..|.|+++-
T Consensus 77 d~V~v~D~~ 85 (352)
T TIGR02658 77 DYVEVIDPQ 85 (352)
T ss_pred CEEEEEECc
Confidence 567776654
No 123
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=42.72 E-value=5e+02 Score=28.82 Aligned_cols=127 Identities=18% Similarity=0.338 Sum_probs=71.8
Q ss_pred ceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 105 NFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
+-+|..+.+|-+|++||-.++++-- +++-+.. ++ ...|+ +..-.....|-++.+.|.+ +-|+|..+
T Consensus 181 ~s~Iacv~Ln~~Gt~vATaStkGTL-IRIFdt~---~g-~~l~E--------~RRG~d~A~iy~iaFSp~~-s~LavsSd 246 (346)
T KOG2111|consen 181 DSDIACVALNLQGTLVATASTKGTL-IRIFDTE---DG-TLLQE--------LRRGVDRADIYCIAFSPNS-SWLAVSSD 246 (346)
T ss_pred cCceeEEEEcCCccEEEEeccCcEE-EEEEEcC---CC-cEeee--------eecCCchheEEEEEeCCCc-cEEEEEcC
Confidence 3589999999999999999988754 4443221 12 22221 1111123456666665543 45566666
Q ss_pred CCeEEEEeccCCCCCCcEE-EEcccCC--CCCCCCC---------CCCceEEEEecCCCCCCceEEEEEecCCcEEEE
Q 005546 185 DSVFRLFNLASDVMQPEQE-YYLQPVE--PGRYRNA---------ASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 185 Dn~iRlydl~~~~~~p~q~-~~L~~~~--~g~s~~~---------s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYal 250 (691)
-++|.+|.+. +....+++ -.+...+ -.+.+++ ......-..||. ...|+.++..||.-|-+
T Consensus 247 KgTlHiF~l~-~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~----~~nsvi~i~~Dgsy~k~ 319 (346)
T KOG2111|consen 247 KGTLHIFSLR-DTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGS----ETNTVIAICADGSYYKF 319 (346)
T ss_pred CCeEEEEEee-cCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecC----CCCeEEEEEeCCcEEEE
Confidence 6999999996 32222221 1111000 0111111 122456666776 35899999999877654
No 124
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=42.60 E-value=5.7e+02 Score=30.47 Aligned_cols=79 Identities=15% Similarity=0.351 Sum_probs=48.5
Q ss_pred eeee--EEEeCCCCCEEEEEecC-----------eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEe
Q 005546 106 FEVS--RISINRNGSALLLIGSD-----------GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH 172 (691)
Q Consensus 106 feI~--~i~lSpsG~~LAl~G~~-----------~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WH 172 (691)
|.|. ++---.||+|||+.-.+ .+.|+++-.+ .|....+.+ +-.|..-.|-
T Consensus 392 fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK-------dIpve~vel----------ke~vi~FaWE 454 (698)
T KOG2314|consen 392 FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK-------DIPVEVVEL----------KESVIAFAWE 454 (698)
T ss_pred eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeecc-------CCCceeeec----------chheeeeeec
Confidence 5555 67778999999996432 3344444311 121222222 2247888999
Q ss_pred cCCCC--EEEEEecCCeEEEEeccCCCCCCc
Q 005546 173 PYSDT--HLGILSSDSVFRLFNLASDVMQPE 201 (691)
Q Consensus 173 P~sds--~LvVLTsDn~iRlydl~~~~~~p~ 201 (691)
|.|+. .|..=|.-+++++|.+......|.
T Consensus 455 P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 455 PHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred cCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 99974 444455568999999985455553
No 125
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=42.59 E-value=4.9e+02 Score=28.46 Aligned_cols=82 Identities=13% Similarity=0.232 Sum_probs=54.0
Q ss_pred ceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecC
Q 005546 95 SKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPY 174 (691)
Q Consensus 95 yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~ 174 (691)
++.+.-. .-+|-.+.+|++.+- ++.|++.-.+.--..- + .|+ |++++. ...-=|.+|+|||-
T Consensus 98 t~~f~GH---~~dVlsva~s~dn~q-ivSGSrDkTiklwnt~-g-------~ck-~t~~~~-----~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 98 TRRFVGH---TKDVLSVAFSTDNRQ-IVSGSRDKTIKLWNTL-G-------VCK-YTIHED-----SHREWVSCVRFSPN 159 (315)
T ss_pred EEEEEec---CCceEEEEecCCCce-eecCCCcceeeeeeec-c-------cEE-EEEecC-----CCcCcEEEEEEcCC
Confidence 5555532 357889999998655 4567766655433200 1 142 333321 11345899999999
Q ss_pred C-CCEEEEEecCCeEEEEecc
Q 005546 175 S-DTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 175 s-ds~LvVLTsDn~iRlydl~ 194 (691)
. ++.||=-..|.++|+||+.
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~ 180 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLR 180 (315)
T ss_pred CCCcEEEEccCCceEEEEccC
Confidence 8 8888888899999999997
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.27 E-value=73 Score=38.65 Aligned_cols=91 Identities=18% Similarity=0.297 Sum_probs=66.8
Q ss_pred CceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEec
Q 005546 94 PSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHP 173 (691)
Q Consensus 94 ~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP 173 (691)
+|+.+.- .+.-++..|.+|++-.-++++|...+-|..++... ...+|+-.. +. ..+.......|.||-
T Consensus 30 ~~~~~~~--~~k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~-----~~~~~~~~~-k~----kqn~~~S~~DVkW~~ 97 (839)
T KOG0269|consen 30 PYDKMNC--KLKAKANAISVNRDINQIVVAGRSLLKLYAINPND-----FSEKCNHRF-KT----KQNKFYSAADVKWGQ 97 (839)
T ss_pred cchheee--ecccccceEeecCCcceeEEecccceeeEeeCccc-----CCcceeeec-cc----ccceeeehhhccccc
Confidence 4653322 24557889999999999999999999999998552 234454432 11 123344578899996
Q ss_pred CCCCEEEEEecCCeEEEEeccCC
Q 005546 174 YSDTHLGILSSDSVFRLFNLASD 196 (691)
Q Consensus 174 ~sds~LvVLTsDn~iRlydl~~~ 196 (691)
+.+.+|.+-.+++.|-+|||++.
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred chhhhheeecCCCcEEEEecCcc
Confidence 66899999999999999999974
No 127
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=41.37 E-value=2e+02 Score=33.77 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=62.7
Q ss_pred EEEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCC--CceeeeEEEeCCCCCEEEE-EecCeEEEE
Q 005546 55 LVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVK--LNFEVSRISINRNGSALLL-IGSDGLCVM 131 (691)
Q Consensus 55 lla~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~p--l~feI~~i~lSpsG~~LAl-~G~~~V~Vv 131 (691)
+|+|..++-|=+|+-|+. .+.-+++++.+. ....+.....|++|.++|- +++-.|.+-
T Consensus 284 FlT~s~DgtlRiWdv~~~-------------------k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNT-------------------KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred eEEecCCCcEEEEecCCc-------------------hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 666666777888877651 111223333211 1235678889999999765 466677777
Q ss_pred EeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCC
Q 005546 132 YLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQP 200 (691)
Q Consensus 132 ~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p 200 (691)
..+.+... .. +.|. +.| .++..|..+.|-+.+ ..|+-=-.|+++++|||.. ..+|
T Consensus 345 ~~~~~~v~---p~-----~~vk-~AH---~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq-~kkp 399 (641)
T KOG0772|consen 345 DKGSRTVR---PV-----MKVK-DAH---LPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQ-FKKP 399 (641)
T ss_pred ecCCcccc---cc-----eEee-ecc---CCCCceeEEEecccc-chhhhccCCCceeeeeccc-cccc
Confidence 76533111 01 1121 111 233356666665544 2333344689999999974 4444
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=41.35 E-value=36 Score=37.04 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=33.5
Q ss_pred eecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCC
Q 005546 158 FSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASD 196 (691)
Q Consensus 158 ~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~ 196 (691)
-.+...-.|..|.|-|.++=-|..=..|+.||+||+.+-
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra 221 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA 221 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence 334556689999999999999999999999999999863
No 129
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=40.99 E-value=49 Score=37.96 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=43.9
Q ss_pred eEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeE
Q 005546 109 SRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVF 188 (691)
Q Consensus 109 ~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~i 188 (691)
.++-.||+|++||-=...+-+-+ |.. + .||-+... + .....+..|.|||..-+-++.=-=|+.|
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~-----wdw--k---t~kl~~~l-k-----ah~~~ci~v~wHP~e~Skvat~~w~G~I 499 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNF-----WDW--K---TTKLVSKL-K-----AHDQPCIGVDWHPVEPSKVATCGWDGLI 499 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEE-----eec--h---hhhhhhcc-c-----cCCcceEEEEecCCCcceeEecccCcee
Confidence 47889999999985433333222 211 0 02222111 1 1234799999999998888888889999
Q ss_pred EEEe
Q 005546 189 RLFN 192 (691)
Q Consensus 189 Rlyd 192 (691)
.+||
T Consensus 500 kiwd 503 (503)
T KOG0282|consen 500 KIWD 503 (503)
T ss_pred EecC
Confidence 9986
No 130
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.58 E-value=1.9e+02 Score=31.16 Aligned_cols=109 Identities=19% Similarity=0.295 Sum_probs=69.7
Q ss_pred CCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCC
Q 005546 117 GSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASD 196 (691)
Q Consensus 117 G~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~ 196 (691)
+++--|.|.-.+.|+++.+. ++--.|.+|...+ .+-.|+|.+.-+.-+.+-.-|+.+|+||+. .
T Consensus 29 ~q~yGl~G~G~L~ile~~~~-----~gi~e~~s~d~~D----------~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~-~ 92 (311)
T KOG0277|consen 29 AQHYGLAGNGRLFILEVTDP-----KGIQECQSYDTED----------GLFDVAWSENHENQVIAASGDGSLRLFDLT-M 92 (311)
T ss_pred hhhcccccCceEEEEecCCC-----CCeEEEEeeeccc----------ceeEeeecCCCcceEEEEecCceEEEeccC-C
Confidence 44455678889999999622 2233476664432 367899999999999999999999999975 3
Q ss_pred CCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEec-CCcEEEEcccCCC
Q 005546 197 VMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYILCPVVPF 256 (691)
Q Consensus 197 ~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~-~GDIYalcP~lP~ 256 (691)
+..|-+. ++. -..|+.|.+.++. | +. .++..+ ||.|-.--|-.|.
T Consensus 93 ~s~Pi~~--~kE---------H~~EV~Svdwn~~--~-r~-~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 93 PSKPIHK--FKE---------HKREVYSVDWNTV--R-RR-IFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred CCcchhH--HHh---------hhhheEEeccccc--c-ce-eEEeeccCCceEeecCCCCc
Confidence 4444211 111 1357888888873 1 11 222223 6666666666654
No 131
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=40.53 E-value=2.4e+02 Score=32.65 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=48.8
Q ss_pred eeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecC
Q 005546 106 FEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD 185 (691)
-.|..+..||||+||| .|+.+=+|+-.+.+.++ .+ +++ ...-.|-.+.|.-.+ .-|.+=.+|
T Consensus 453 ~pVysvafS~~g~ylA-sGs~dg~V~iws~~~~~----l~--~s~----------~~~~~Ifel~Wn~~G-~kl~~~~sd 514 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLA-SGSLDGCVHIWSTKTGK----LV--KSY----------QGTGGIFELCWNAAG-DKLGACASD 514 (524)
T ss_pred CceEEEEecCCCcEEE-ecCCCCeeEeccccchh----ee--Eee----------cCCCeEEEEEEcCCC-CEEEEEecC
Confidence 3688999999999998 57766566655533221 11 111 223347888898766 778888999
Q ss_pred CeEEEEecc
Q 005546 186 SVFRLFNLA 194 (691)
Q Consensus 186 n~iRlydl~ 194 (691)
+.+++-|+.
T Consensus 515 ~~vcvldlr 523 (524)
T KOG0273|consen 515 GSVCVLDLR 523 (524)
T ss_pred CCceEEEec
Confidence 999998874
No 132
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.38 E-value=90 Score=37.69 Aligned_cols=73 Identities=22% Similarity=0.242 Sum_probs=50.8
Q ss_pred eeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCC-EEEEEecC
Q 005546 107 EVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDT-HLGILSSD 185 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds-~LvVLTsD 185 (691)
.|--+.++|+|.+||-.|..+...| |.. +... | + |........|-.+.|||.... -|+.=..|
T Consensus 107 Pvi~ma~~~~g~LlAtggaD~~v~V-----Wdi-~~~~--~-t-------h~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 107 PVITMAFDPTGTLLATGGADGRVKV-----WDI-KNGY--C-T-------HSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred CeEEEEEcCCCceEEeccccceEEE-----EEe-eCCE--E-E-------EEecCCCceEEEEEeCCccchhheeecCCC
Confidence 4667889999999999988765554 432 1112 3 1 222344567999999999854 45556678
Q ss_pred CeEEEEeccC
Q 005546 186 SVFRLFNLAS 195 (691)
Q Consensus 186 n~iRlydl~~ 195 (691)
+++|+||+..
T Consensus 171 ~~v~vwnl~~ 180 (775)
T KOG0319|consen 171 GTVRVWNLND 180 (775)
T ss_pred ceEEEEEccc
Confidence 9999999984
No 133
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=40.19 E-value=2.5e+02 Score=34.04 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=70.0
Q ss_pred ceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 105 NFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
..-|++|.+||+|+||+-++. +++++-+.-+... +.-...| +- .+.--|=.+.|-|.+-. +++=.
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~--~e~~fa~----~k-------~HtRIIWdcsW~pde~~-FaTaS 637 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK--DEFRFAC----LK-------AHTRIIWDCSWSPDEKY-FATAS 637 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeecccc--hhhhhcc----cc-------ccceEEEEcccCcccce-eEEec
Confidence 357999999999999987765 6777776632210 1111222 11 11112667788888733 88889
Q ss_pred cCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCC-CCCCceEEEEEecCCcEEEEc
Q 005546 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGD-HLWDRFSVFVLFSDGSIYILC 251 (691)
Q Consensus 184 sDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~-~~W~~~TLyiL~~~GDIYalc 251 (691)
-|-.+.+|.+..+...-...+.. -..+..+.+.++-+. +.=...-+-+=++.|.||..-
T Consensus 638 RDK~VkVW~~~~~~d~~i~~~a~---------~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 638 RDKKVKVWEEPDLRDKYISRFAC---------LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred CCceEEEEeccCchhhhhhhhch---------hccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 99999999997542221111111 011334455555543 111222344446789888763
No 134
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=40.03 E-value=54 Score=36.96 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=53.3
Q ss_pred eeeEEEeCCCCCEEEEEecC--eEEEEEeCCCCCCCC-CCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 107 EVSRISINRNGSALLLIGSD--GLCVMYLYGRTCSSD-NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~--~V~Vv~LP~~~~~~d-~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
.+-.+.-+|--+.+.-.|+. +|.|=.+|++--..+ ..++.+ + ..+.-+|--|.|||.+..-|.---
T Consensus 83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~---------L--~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVE---------L--YGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEE---------E--eecceeEEEEeecccchhhHhhcc
Confidence 45566678887887777775 555667786632111 222211 1 123347889999999998888888
Q ss_pred cCCeEEEEeccC
Q 005546 184 SDSVFRLFNLAS 195 (691)
Q Consensus 184 sDn~iRlydl~~ 195 (691)
.||+|.+||+..
T Consensus 152 ~Dn~v~iWnv~t 163 (472)
T KOG0303|consen 152 SDNTVSIWNVGT 163 (472)
T ss_pred CCceEEEEeccC
Confidence 999999999975
No 135
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=39.99 E-value=82 Score=33.76 Aligned_cols=110 Identities=18% Similarity=0.242 Sum_probs=64.7
Q ss_pred eeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCC
Q 005546 108 VSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDS 186 (691)
Q Consensus 108 I~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn 186 (691)
|+.+.++.+.++|.-=|.. -+.|..|.+.-. .+. . + .++...|+.|.|- .+|.|++-=+.|.
T Consensus 103 vk~~af~~ds~~lltgg~ekllrvfdln~p~A----pp~-----E------~-~ghtg~Ir~v~wc-~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA----PPK-----E------I-SGHTGGIRTVLWC-HEDKCILSSADDK 165 (334)
T ss_pred eeeEEecccchhhhccchHHHhhhhhccCCCC----Cch-----h------h-cCCCCcceeEEEe-ccCceEEeeccCC
Confidence 6678888888887665554 445666653311 111 0 1 1334569999996 3577777669999
Q ss_pred eEEEEeccCCCCCCcEEEEcccCCCCCCCCCC-CCceEEEEecCC-CCCCceEE
Q 005546 187 VFRLFNLASDVMQPEQEYYLQPVEPGRYRNAA-SICPVDFSFGGD-HLWDRFSV 238 (691)
Q Consensus 187 ~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s-~~~avsf~FG~~-~~W~~~TL 238 (691)
+||+||+..+ +-.|++.++. +-.|.-.+ +-+++-++.|+. ..|++-++
T Consensus 166 tVRLWD~rTg--t~v~sL~~~s--~VtSlEvs~dG~ilTia~gssV~Fwdaksf 215 (334)
T KOG0278|consen 166 TVRLWDHRTG--TEVQSLEFNS--PVTSLEVSQDGRILTIAYGSSVKFWDAKSF 215 (334)
T ss_pred ceEEEEeccC--cEEEEEecCC--CCcceeeccCCCEEEEecCceeEEeccccc
Confidence 9999999743 3455666642 11121111 235666777764 34554443
No 136
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.93 E-value=2.2e+02 Score=32.67 Aligned_cols=72 Identities=24% Similarity=0.313 Sum_probs=49.6
Q ss_pred ccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCC-CCceEEEEecCCCCCCceEEEEE
Q 005546 163 VIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAA-SICPVDFSFGGDHLWDRFSVFVL 241 (691)
Q Consensus 163 ~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s-~~~avsf~FG~~~~W~~~TLyiL 241 (691)
+-.|..+.|||...+.|+.=+-|++++++|+. ++.. .|+..... ..+-+...+-+ .++.++-
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R-~~~~-----------s~~~wk~~g~VEkv~w~~~s-----e~~f~~~ 348 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR-DPSN-----------SGKEWKFDGEVEKVAWDPHS-----ENSFFVS 348 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeecc-Cccc-----------cCceEEeccceEEEEecCCC-----ceeEEEe
Confidence 45799999999999999999999999999996 2221 11111111 22444444443 5677777
Q ss_pred ecCCcEEEEc
Q 005546 242 FSDGSIYILC 251 (691)
Q Consensus 242 ~~~GDIYalc 251 (691)
+.||-||-+-
T Consensus 349 tddG~v~~~D 358 (463)
T KOG0270|consen 349 TDDGTVYYFD 358 (463)
T ss_pred cCCceEEeee
Confidence 8899999873
No 137
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=35.73 E-value=3.7e+02 Score=29.07 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=48.2
Q ss_pred ceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecC
Q 005546 95 SKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPY 174 (691)
Q Consensus 95 yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~ 174 (691)
+.+|+ +..+...|....+.|+- -.-++|-...-+-..- +..+..+.| + .+..-.+|..|++-|.
T Consensus 215 f~~lK-s~k~P~nV~SASL~P~k-~~fVaGged~~~~kfD----y~TgeEi~~--~--------nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 215 FGLLK-SYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFD----YNTGEEIGS--Y--------NKGHFGPVHCVRFSPD 278 (334)
T ss_pred cccee-eccCccccccccccCCC-ceEEecCcceEEEEEe----ccCCceeee--c--------ccCCCCceEEEEECCC
Confidence 33444 23334578888888885 4445555443333221 101334444 1 1223357999999999
Q ss_pred CCCEEEEEecCCeEEEEeccC
Q 005546 175 SDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 175 sds~LvVLTsDn~iRlydl~~ 195 (691)
++.+ ..=..|++||+|....
T Consensus 279 GE~y-AsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 279 GELY-ASGSEDGTIRLWQTTP 298 (334)
T ss_pred Ccee-eccCCCceEEEEEecC
Confidence 8543 2345799999999873
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.63 E-value=2.2e+02 Score=30.53 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=80.0
Q ss_pred eeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEE-ecCCCCEEEEEe
Q 005546 106 FEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSW-HPYSDTHLGILS 183 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~W-HP~sds~LvVLT 183 (691)
.-|+.++++--|+.||-.++ ..|-|.+.-.. +. +..+. + + ...+.+|=||.| ||.-++.|.=-.
T Consensus 12 D~IHda~lDyygkrlATcsSD~tVkIf~v~~n-----~~-----s~ll~-~-L--~Gh~GPVwqv~wahPk~G~iLAScs 77 (299)
T KOG1332|consen 12 DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNN-----GQ-----SKLLA-E-L--TGHSGPVWKVAWAHPKFGTILASCS 77 (299)
T ss_pred hhhhHhhhhhhcceeeeecCCccEEEEEEcCC-----CC-----ceeee-E-e--cCCCCCeeEEeecccccCcEeeEee
Confidence 35778889999999999876 47778877533 11 11222 1 1 245678999999 899999999889
Q ss_pred cCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEc
Q 005546 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC 251 (691)
Q Consensus 184 sDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalc 251 (691)
-|+.+-+|.=... .=.|.... .+-.-.+-+.+|.|.. -+++|....+||+|-.|-
T Consensus 78 YDgkVIiWke~~g--~w~k~~e~---------~~h~~SVNsV~waphe--ygl~LacasSDG~vsvl~ 132 (299)
T KOG1332|consen 78 YDGKVIIWKEENG--RWTKAYEH---------AAHSASVNSVAWAPHE--YGLLLACASSDGKVSVLT 132 (299)
T ss_pred cCceEEEEecCCC--chhhhhhh---------hhhcccceeecccccc--cceEEEEeeCCCcEEEEE
Confidence 9999999986532 11111111 0001235678888853 478999999999998773
No 139
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=35.50 E-value=73 Score=36.54 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=21.2
Q ss_pred eeEEEeCCCCCEEEEEecCeEEEEEeC
Q 005546 108 VSRISINRNGSALLLIGSDGLCVMYLY 134 (691)
Q Consensus 108 I~~i~lSpsG~~LAl~G~~~V~Vv~LP 134 (691)
|+.+..|++|+++|+++.+++.|+.-.
T Consensus 147 vk~V~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred CcEEEEECCCCEEEEEeCCeEEEEEec
Confidence 899999999999999999999999864
No 140
>PRK04922 tolB translocation protein TolB; Provisional
Probab=35.10 E-value=3e+02 Score=30.90 Aligned_cols=69 Identities=17% Similarity=0.111 Sum_probs=40.2
Q ss_pred eeEEEeCCCCCEEEEEe----cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 108 VSRISINRNGSALLLIG----SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 108 I~~i~lSpsG~~LAl~G----~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
+.....||+|++||... ...|.++.+... . ++ .+. ... .......|.|.+...++++.
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g--~-------~~--~l~------~~~-g~~~~~~~SpDG~~l~~~~s 267 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG--Q-------RE--LVA------SFR-GINGAPSFSPDGRRLALTLS 267 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCC--C-------EE--Eec------cCC-CCccCceECCCCCEEEEEEe
Confidence 45667889999999874 345777666311 1 11 111 011 12345789997766556666
Q ss_pred cCC--eEEEEecc
Q 005546 184 SDS--VFRLFNLA 194 (691)
Q Consensus 184 sDn--~iRlydl~ 194 (691)
.++ .|.+||+.
T Consensus 268 ~~g~~~Iy~~d~~ 280 (433)
T PRK04922 268 RDGNPEIYVMDLG 280 (433)
T ss_pred CCCCceEEEEECC
Confidence 665 47777775
No 141
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=34.52 E-value=6.1e+02 Score=30.16 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=80.6
Q ss_pred eeeEEEeCCCCCEEEEEecC--eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC-CCEEEEEe
Q 005546 107 EVSRISINRNGSALLLIGSD--GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILS 183 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~--~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s-ds~LvVLT 183 (691)
+|..+.++|.--.+++.|.. +|++=.+-.. . +. ...+-+.. .......+.++.|-... +.-++.+.
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~--~-~~-~~s~ls~~-------~~sh~~~v~~vvW~~~~~~~~f~s~s 312 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKG--S-DT-PPSGLSAL-------EVSHSEPVTAVVWLQNEHNTEFFSLS 312 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEccCC--C-CC-CCcccccc-------cccCCcCeEEEEEeccCCCCceEEEe
Confidence 68899999998888888874 4555444311 1 11 01111111 11244579999999876 55688888
Q ss_pred cCCeEEEEeccCCCCCCcEEEEcccCC-CCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEc
Q 005546 184 SDSVFRLFNLASDVMQPEQEYYLQPVE-PGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC 251 (691)
Q Consensus 184 sDn~iRlydl~~~~~~p~q~~~L~~~~-~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalc 251 (691)
+|+.|..|+++ ....|.+..-+.+.. ++-...- .--+.++.|-+. .+...+|-+..|-||.-|
T Consensus 313 sDG~i~~W~~~-~l~~P~e~~~~~~~~~~~~~~~~-~~~~t~~~F~~~---~p~~FiVGTe~G~v~~~~ 376 (555)
T KOG1587|consen 313 SDGSICSWDTD-MLSLPVEGLLLESKKHKGQQSSK-AVGATSLKFEPT---DPNHFIVGTEEGKVYKGC 376 (555)
T ss_pred cCCcEeeeecc-ccccchhhccccccccccccccc-ccceeeEeeccC---CCceEEEEcCCcEEEEEe
Confidence 89999999987 456666555443311 1111110 123677788764 466677778899999986
No 142
>PRK13616 lipoprotein LpqB; Provisional
Probab=33.53 E-value=1.7e+02 Score=34.81 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=52.8
Q ss_pred eeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEE-EEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 106 FEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIIC-RTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~c-rt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
-.|..+.+||+|+.+|++-...|.|..+=+..+ + ...+ ....|.. .....+.++.|-+. ++|+|+++
T Consensus 448 g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~---G-~~~l~~~~~l~~------~l~~~~~~l~W~~~--~~L~V~~~ 515 (591)
T PRK13616 448 GPISELQLSRDGVRAAMIIGGKVYLAVVEQTED---G-QYALTNPREVGP------GLGDTAVSLDWRTG--DSLVVGRS 515 (591)
T ss_pred CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCC---C-ceeecccEEeec------ccCCccccceEecC--CEEEEEec
Confidence 469999999999999998888888855532211 1 1111 1112221 11223467778654 45999999
Q ss_pred CCeEEEEeccCCCCCC
Q 005546 185 DSVFRLFNLASDVMQP 200 (691)
Q Consensus 185 Dn~iRlydl~~~~~~p 200 (691)
+..-.+|.++.|+...
T Consensus 516 ~~~~~v~~v~vDG~~~ 531 (591)
T PRK13616 516 DPEHPVWYVNLDGSNS 531 (591)
T ss_pred CCCCceEEEecCCccc
Confidence 8777788887776543
No 143
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=32.82 E-value=6.3e+02 Score=26.88 Aligned_cols=91 Identities=10% Similarity=0.273 Sum_probs=59.5
Q ss_pred eeeEEEeCCCCCEEEE-EecCeEEEEEeCCCC----C---CCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCE
Q 005546 107 EVSRISINRNGSALLL-IGSDGLCVMYLYGRT----C---SSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTH 178 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl-~G~~~V~Vv~LP~~~----~---~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~ 178 (691)
-|+.+.+-|+|.+-|+ .++++..|+.-|+-. + +-....+.||-- ......|-.+.|.|.++ -
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~---------khhkgsiyc~~ws~~ge-l 103 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRN---------KHHKGSIYCTAWSPCGE-L 103 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeec---------cccCccEEEEEecCccC-e
Confidence 6899999999999998 456789999888643 1 111345666533 23455799999999874 2
Q ss_pred EEEEecCCeEEEEeccCC---CCCCcEEEEcc
Q 005546 179 LGILSSDSVFRLFNLASD---VMQPEQEYYLQ 207 (691)
Q Consensus 179 LvVLTsDn~iRlydl~~~---~~~p~q~~~L~ 207 (691)
|.+=.+|.+|++.-.+.+ ..-++-+|+.+
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmh 135 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMH 135 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeec
Confidence 334456778887666543 22244455553
No 144
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=32.79 E-value=3.3e+02 Score=30.21 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=28.3
Q ss_pred eeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCC
Q 005546 106 FEVSRISINRNGSALLLIGSD-GLCVMYLYGRT 137 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~ 137 (691)
-+|..|.+||++.+||+..++ +|||..|-+..
T Consensus 227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred heEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 589999999999999999887 89999997653
No 145
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=32.46 E-value=3e+02 Score=32.68 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=73.9
Q ss_pred eeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCC-CCEEEEEec
Q 005546 106 FEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILSS 184 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s-ds~LvVLTs 184 (691)
-.|.-|.-|.+|.+|| .|+....++.- -.+.... -.++ + + .....|-.|.|-|.. +.-++.=..
T Consensus 51 GCVN~LeWn~dG~lL~-SGSDD~r~ivW----d~~~~Kl--lhsI--~-T-----gHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLA-SGSDDTRLIVW----DPFEYKL--LHSI--S-T-----GHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred ceecceeecCCCCEEe-ecCCcceEEee----cchhcce--eeee--e-c-----ccccceeEEeeeccCCCeEEEeccC
Confidence 4677888999999886 67777777653 3322211 1112 1 1 233568999999998 666667778
Q ss_pred CCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCC---------CCCCceEEEEEecCCcEEEE
Q 005546 185 DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGD---------HLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 185 Dn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~---------~~W~~~TLyiL~~~GDIYal 250 (691)
|..||+||++...+ +.-+- +++...+||+-. -.-++-|.|.+.+||-|--.
T Consensus 116 Dk~i~lfdl~~~~~--------------~~~d~-~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQy 175 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKE--------------GGMDH-GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQY 175 (758)
T ss_pred cceEEEEecccccc--------------ccccc-CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeee
Confidence 99999999984221 11111 445556666631 12367899999999987443
No 146
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=32.45 E-value=5.7e+02 Score=30.09 Aligned_cols=71 Identities=13% Similarity=0.314 Sum_probs=41.1
Q ss_pred eeeEEEeCCCCCE--EEEEecC------eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCC-C
Q 005546 107 EVSRISINRNGSA--LLLIGSD------GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSD-T 177 (691)
Q Consensus 107 eI~~i~lSpsG~~--LAl~G~~------~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sd-s 177 (691)
-|..-.+||-|++ ||...+. .+.|.+||.. ..+.-++ ||. ..=+|.-||++++ -
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~------s~l~tk~-------lfk----~~~~qLkW~~~g~~l 237 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN------SVLVTKN-------LFK----VSGVQLKWQVLGKYL 237 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC------Ceeeeee-------eEe----ecccEEEEecCCceE
Confidence 3555667776543 6776553 6788888822 2232222 232 1237889999996 4
Q ss_pred EEEEEecC---------CeEEEEecc
Q 005546 178 HLGILSSD---------SVFRLFNLA 194 (691)
Q Consensus 178 ~LvVLTsD---------n~iRlydl~ 194 (691)
|+.|.|.= +.+.||.+.
T Consensus 238 l~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 238 LVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred EEEEEEeeecccceeccceEEEEeec
Confidence 55555542 556666665
No 147
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.21 E-value=8.1e+02 Score=28.56 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=68.0
Q ss_pred eCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCC
Q 005546 59 DGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTC 138 (691)
Q Consensus 59 ~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~ 138 (691)
|-+++|+..-+.+..+-..+.+.. .--|.+.- . .+.|+.+.++|.+..+++.|+.+=.+- +-+-..
T Consensus 77 R~DG~LlaaGD~sG~V~vfD~k~r----------~iLR~~~a--h-~apv~~~~f~~~d~t~l~s~sDd~v~k-~~d~s~ 142 (487)
T KOG0310|consen 77 RSDGRLLAAGDESGHVKVFDMKSR----------VILRQLYA--H-QAPVHVTKFSPQDNTMLVSGSDDKVVK-YWDLST 142 (487)
T ss_pred ecCCeEEEccCCcCcEEEeccccH----------HHHHHHhh--c-cCceeEEEecccCCeEEEecCCCceEE-EEEcCC
Confidence 335777776666655444442110 01233332 2 367888999999999999888754332 111111
Q ss_pred CCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 139 SSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 139 ~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
+ . . .+.+ +.+.--|+...|||..+..+|.=.-|+.||+||+..
T Consensus 143 a----~--v-~~~l-------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 143 A----Y--V-QAEL-------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred c----E--E-EEEe-------cCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 1 1 1 1111 234457999999999998888889999999999974
No 148
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=32.01 E-value=1e+02 Score=34.31 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=69.8
Q ss_pred eEEEEECCcceEEEEEeecCC---------CCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEe
Q 005546 63 RLYYWDQNAQCLHRISVRLGE---------PDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYL 133 (691)
Q Consensus 63 ~Lfvw~~n~~~l~~~~lR~~~---------~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~L 133 (691)
.+|++....+.++.+|+|... ++++ ...-|..... +--.|..+.+|++|+|++-=.--+|-|-++
T Consensus 227 n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe----dp~~rsffse--iIsSISDvKFs~sGryilsRDyltvk~wD~ 300 (433)
T KOG1354|consen 227 NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE----DPSSRSFFSE--IISSISDVKFSHSGRYILSRDYLTVKLWDL 300 (433)
T ss_pred cEEEEecCCCcEEEeechhhhhhcchhhhhcccc----CCcchhhHHH--HhhhhhceEEccCCcEEEEeccceeEEEec
Confidence 478888888899999999662 1222 1222332221 123677889999999998766677888777
Q ss_pred CCCCCCCCCCceEEEEEEecceeeee------cCCcc-ceEEEEEecCC-CCEEEEEecCCeEEEEeccCC
Q 005546 134 YGRTCSSDNKTIICRTVSVGSQIYFS------SSNVI-RTLQVSWHPYS-DTHLGILSSDSVFRLFNLASD 196 (691)
Q Consensus 134 P~~~~~~d~~~i~crt~~v~~~~~~~------s~~~~-~I~qv~WHP~s-ds~LvVLTsDn~iRlydl~~~ 196 (691)
+-.. . .|++++|.+. +.. .+..+ .=-.+.| .+ |+++.+=.-+|.+|+|+++++
T Consensus 301 nme~-----~--pv~t~~vh~~-lr~kLc~lYEnD~IfdKFec~~--sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 301 NMEA-----K--PVETYPVHEY-LRSKLCSLYENDAIFDKFECSW--SGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred cccC-----C--cceEEeehHh-HHHHHHHHhhccchhheeEEEE--cCCcceEecccccceEEEecCCCC
Confidence 6331 1 2778877643 111 00000 0012222 12 455555556799999998753
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=31.85 E-value=7e+02 Score=29.06 Aligned_cols=126 Identities=13% Similarity=0.210 Sum_probs=75.2
Q ss_pred eeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecC
Q 005546 107 EVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD 185 (691)
.|+.+.+-|+..+|.+.|-. .+.|..+- ++.. -+.. .+|+. ..+|.++.+||.+.+-+.+=+--
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvD---Gk~N-----~~lq----S~~l~---~fPi~~a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVD---GKVN-----PKLQ----SIHLE---KFPIQKAEFAPNGHSVIFTSGRR 279 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEec---CccC-----hhhe----eeeec---cCccceeeecCCCceEEEecccc
Confidence 67888999999988888864 56666664 2111 1111 12332 34799999999776555555555
Q ss_pred CeEEEEeccCCCC--------CCc---EEEEcccCC-----CCCC-------------CCCC--CCceEEEEecCCCCCC
Q 005546 186 SVFRLFNLASDVM--------QPE---QEYYLQPVE-----PGRY-------------RNAA--SICPVDFSFGGDHLWD 234 (691)
Q Consensus 186 n~iRlydl~~~~~--------~p~---q~~~L~~~~-----~g~s-------------~~~s--~~~avsf~FG~~~~W~ 234 (691)
-.+..||+..... .++ ..|..++.. .|.. .... .-.+.+|+|.++
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSd---- 355 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSD---- 355 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecC----
Confidence 6788899864110 011 123222211 1110 0111 225789999974
Q ss_pred ceEEEEEecCCcEEEEc
Q 005546 235 RFSVFVLFSDGSIYILC 251 (691)
Q Consensus 235 ~~TLyiL~~~GDIYalc 251 (691)
.--||+..++|.||.+-
T Consensus 356 sk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWN 372 (514)
T ss_pred CcEEEEEcCCceEEEEe
Confidence 46788888899999884
No 150
>PRK00178 tolB translocation protein TolB; Provisional
Probab=31.56 E-value=5.2e+02 Score=28.69 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=40.1
Q ss_pred eeeEEEeCCCCCEEEEEec----CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546 107 EVSRISINRNGSALLLIGS----DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~----~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
.+.....||+|+.||.... ..|.++.+... . .+ .+. ... ..+....|+|.+..-++++
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-------~--~~--~l~------~~~-g~~~~~~~SpDG~~la~~~ 261 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-------R--RE--QIT------NFE-GLNGAPAWSPDGSKLAFVL 261 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-------C--EE--Ecc------CCC-CCcCCeEECCCCCEEEEEE
Confidence 3567788999999998753 35666666311 1 11 111 001 1233578999766555566
Q ss_pred ecCC--eEEEEecc
Q 005546 183 SSDS--VFRLFNLA 194 (691)
Q Consensus 183 TsDn--~iRlydl~ 194 (691)
..++ .|.+||+.
T Consensus 262 ~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 262 SKDGNPEIYVMDLA 275 (430)
T ss_pred ccCCCceEEEEECC
Confidence 6565 45666665
No 151
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=31.46 E-value=2.3e+02 Score=35.01 Aligned_cols=124 Identities=21% Similarity=0.269 Sum_probs=0.0
Q ss_pred EEEeCCCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEE-ecCeEEEEEeC
Q 005546 56 VAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLI-GSDGLCVMYLY 134 (691)
Q Consensus 56 la~~g~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~-G~~~V~Vv~LP 134 (691)
++++|-+++.+--+-++.+..-+ -+-+.|.-+..+.-.+..++......++|++ +...|.|++.-
T Consensus 499 la~D~~n~~~vsa~~~Gilkfw~--------------f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 499 LAVDGTNRLLVSAGADGILKFWD--------------FKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred EEecCCCceEEEccCcceEEEEe--------------cCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Q ss_pred CCCCCCCCCceEEEEEEecceeeeecCCccceEEEEE-ecCC---------CCEEEEEecCCeEEEEeccCCCCCCcEEE
Q 005546 135 GRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSW-HPYS---------DTHLGILSSDSVFRLFNLASDVMQPEQEY 204 (691)
Q Consensus 135 ~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~W-HP~s---------ds~LvVLTsDn~iRlydl~~~~~~p~q~~ 204 (691)
.+ +|++..| |-.- +.=|++..-|++||+||+- ....-.-+
T Consensus 565 t~----------------------------kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp--t~~lID~~ 614 (910)
T KOG1539|consen 565 TR----------------------------KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP--TGTLIDGL 614 (910)
T ss_pred hh----------------------------hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc--CcceeeeE
Q ss_pred EcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEE
Q 005546 205 YLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (691)
Q Consensus 205 ~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYa 249 (691)
.+ +..+++.+|.| +||.-|
T Consensus 615 ~v------------d~~~~sls~SP--------------ngD~LA 633 (910)
T KOG1539|consen 615 LV------------DSPCTSLSFSP--------------NGDFLA 633 (910)
T ss_pred ec------------CCcceeeEECC--------------CCCEEE
No 152
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=31.22 E-value=1.2e+03 Score=29.82 Aligned_cols=131 Identities=14% Similarity=0.086 Sum_probs=64.0
Q ss_pred CceEEEEeCCCeEEEEECCcceEEEEEeecCCC----CCCccccCCCceE--EecCCCCceeeeEEEeCCCCCE--EEEE
Q 005546 52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEP----DPTSILAAFPSKV--MRADVKLNFEVSRISINRNGSA--LLLI 123 (691)
Q Consensus 52 ~rnlla~~g~~~Lfvw~~n~~~l~~~~lR~~~~----~~~~~~~~~~yk~--L~~~~pl~feI~~i~lSpsG~~--LAl~ 123 (691)
|+.+....+++.||+.|..+..+.++|...+.. .... ....|.- ......+ -....|.++|++.. ++-.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~--~g~~~~gg~~~~~~~l-n~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGT--KGSDYQGGKKGTSQVL-NSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCc--ccCCCCCChhhhHhhc-CCCeEEEEecCCCeEEEEEC
Confidence 566554433567899888777777777533311 0000 0000000 0000001 13457889995443 4445
Q ss_pred ecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCC-------ccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 124 GSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSN-------VIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 124 G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~-------~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
|.+.|.++.+-... ++++. +.......+. -..-..+.|+|.++.-.|.-+.++.||.||+..
T Consensus 703 ~~~~I~v~d~~~g~---------v~~~~-G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t 771 (1057)
T PLN02919 703 GQHQIWEYNISDGV---------TRVFS-GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT 771 (1057)
T ss_pred CCCeEEEEECCCCe---------EEEEe-cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 77888888764321 11110 0000000000 011234667776665566666779999999874
No 153
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.05 E-value=2e+02 Score=36.87 Aligned_cols=210 Identities=13% Similarity=0.125 Sum_probs=109.1
Q ss_pred CCCCcccCCCCcccccCcCCCCCCCCCCCCCceEEEEeC-CCeEEEEECCc--ceEEEEEeecCC-C--CCCc-cccC--
Q 005546 22 EEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDG-ASRLYYWDQNA--QCLHRISVRLGE-P--DPTS-ILAA-- 92 (691)
Q Consensus 22 ~~~~Wl~l~~hpiF~~~~~~~~~~~~~~~~~rnlla~~g-~~~Lfvw~~n~--~~l~~~~lR~~~-~--~~~~-~~~~-- 92 (691)
++-++--+..--||.+..... .......+|.++..+ -+.+|+..+.. .|+.+.|+-.-. . ...+ +.+.
T Consensus 16 ~df~f~~l~k~riF~Sfa~~~---e~lp~~~sn~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~ 92 (1405)
T KOG3630|consen 16 EDFGFKFLGKKRIFPSFAALN---EKLPFASSNNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADEN 92 (1405)
T ss_pred cchhheeccceeeeccccccc---ccCchhhhhhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccc
Confidence 344555666677777763321 122334556666666 33344433333 334444432211 1 1111 1111
Q ss_pred CCceEEecCCCCceeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCC-C--CCCCCceEEEEEEecceeeeecCCccceEE
Q 005546 93 FPSKVMRADVKLNFEVSRISINRNGSALLLIGSD-GLCVMYLYGRT-C--SSDNKTIICRTVSVGSQIYFSSSNVIRTLQ 168 (691)
Q Consensus 93 ~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~-~V~Vv~LP~~~-~--~~d~~~i~crt~~v~~~~~~~s~~~~~I~q 168 (691)
...++. -.+.|.++++++++++.++.-++ +..|..+--+. + ..+.....|.+-.. + .......+
T Consensus 93 ~t~~v~-----k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts-----~--ek~vf~~~ 160 (1405)
T KOG3630|consen 93 LTFKVE-----KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATS-----F--EKPVFQLK 160 (1405)
T ss_pred cceeee-----ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccch-----h--cccccccc
Confidence 123333 25678899999999998887554 34443332111 1 11111122322211 1 12335678
Q ss_pred EEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEE
Q 005546 169 VSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIY 248 (691)
Q Consensus 169 v~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIY 248 (691)
+.|.|.-....+|-.+|..||+.-+..... -.+.+. ++..+.+.|..+. ++.++|=..+|-+-
T Consensus 161 ~~wnP~vp~n~av~l~dlsl~V~~~~~~~~-~v~s~p------------~t~~~Tav~WSpr----GKQl~iG~nnGt~v 223 (1405)
T KOG3630|consen 161 NVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ-NVTSFP------------VTNSQTAVLWSPR----GKQLFIGRNNGTEV 223 (1405)
T ss_pred ccccCCccchhhhhccccchhhhhhhhhhh-hhcccC------------cccceeeEEeccc----cceeeEecCCCeEE
Confidence 899999965555556678888877753110 000111 1234566777763 67888888899998
Q ss_pred EEcccCCCCCCCChh
Q 005546 249 ILCPVVPFGSVYKWE 263 (691)
Q Consensus 249 alcP~lP~~~~~~~~ 263 (691)
-+-|-++-+..+++-
T Consensus 224 Qy~P~leik~~ip~P 238 (1405)
T KOG3630|consen 224 QYEPSLEIKSEIPEP 238 (1405)
T ss_pred EeecccceeecccCC
Confidence 888888866555553
No 154
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=30.91 E-value=2.4e+02 Score=31.45 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=66.0
Q ss_pred eeEEEeCCCCCEE-EEEecCeEEEEEeCCCCCCCC-CCceEEEEEEecceeeeecCCccceEEEEEecCC-----CCEEE
Q 005546 108 VSRISINRNGSAL-LLIGSDGLCVMYLYGRTCSSD-NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-----DTHLG 180 (691)
Q Consensus 108 I~~i~lSpsG~~L-Al~G~~~V~Vv~LP~~~~~~d-~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s-----ds~Lv 180 (691)
.+..--||+|+-+ +..-...+.+..||......+ +.... ++..+.++. .....|....|+|.- +++|+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~---~~~~~~~r~--~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLN---FSKHLSYRY--QEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccc---cccceeEEe--ccCCEEEEEEeeeccccCCCcccee
Confidence 4566789998754 455667999999996642111 11111 112222222 234578999999995 68999
Q ss_pred EEec-CCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCC--CceEEEEecCC
Q 005546 181 ILSS-DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAAS--ICPVDFSFGGD 230 (691)
Q Consensus 181 VLTs-Dn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~--~~avsf~FG~~ 230 (691)
..++ |+-|++||........ .-+.+++-+ +.+.|.+|.++
T Consensus 127 a~ssr~~PIh~wdaftG~lra----------Sy~~ydh~de~taAhsL~Fs~D 169 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRA----------SYRAYDHQDEYTAAHSLQFSPD 169 (406)
T ss_pred eeccccCceeeeecccccccc----------chhhhhhHHhhhhheeEEecCC
Confidence 7777 6889999986422111 123455443 35678888885
No 155
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=30.52 E-value=2.2e+02 Score=31.56 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=53.1
Q ss_pred ceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCC------CCceEEEEEEecceeeeecCCccceEEEEEecCCCC
Q 005546 105 NFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSD------NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDT 177 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d------~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds 177 (691)
.-..|--.+|++|.++|-=+. -.|-|++.++-..+.. ++. ..+ .+|--+ + + ...-+|..+.|||.+ +
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~-qa~-hPvIRT-l-Y-DH~devn~l~FHPre-~ 185 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT-QAR-HPVIRT-L-Y-DHVDEVNDLDFHPRE-T 185 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc-ccC-CceEee-h-h-hccCcccceeecchh-h
Confidence 346788999999999997544 4788888884322111 000 000 122111 1 1 233478999999975 3
Q ss_pred EEEEEecCCeEEEEeccC
Q 005546 178 HLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 178 ~LvVLTsDn~iRlydl~~ 195 (691)
.|.-=..|++|++||.++
T Consensus 186 ILiS~srD~tvKlFDfsK 203 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSK 203 (430)
T ss_pred eEEeccCCCeEEEEeccc
Confidence 444556799999999986
No 156
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=30.36 E-value=2.7e+02 Score=30.62 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=53.9
Q ss_pred ceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 105 NFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 105 ~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
.-+|..+.++|+|+++|--|...-.++ |..++ .|+-+-+ ....+..|..+.|-+. .+||+--.+
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~L-----Wnv~g----dceN~~~------lkgHsgAVM~l~~~~d-~s~i~S~gt 110 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVL-----WNVYG----DCENFWV------LKGHSGAVMELHGMRD-GSHILSCGT 110 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEE-----Eeccc----cccceee------eccccceeEeeeeccC-CCEEEEecC
Confidence 469999999999999999998765555 53211 1443322 1134557888887655 478888899
Q ss_pred CCeEEEEeccC
Q 005546 185 DSVFRLFNLAS 195 (691)
Q Consensus 185 Dn~iRlydl~~ 195 (691)
|-++|.||+..
T Consensus 111 Dk~v~~wD~~t 121 (338)
T KOG0265|consen 111 DKTVRGWDAET 121 (338)
T ss_pred CceEEEEeccc
Confidence 99999999974
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=29.88 E-value=2.4e+02 Score=33.01 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=46.5
Q ss_pred eeeeEEEeCCCCCEEEEEecCe-EEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 106 FEVSRISINRNGSALLLIGSDG-LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~~~-V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
-.|.-+-.|.+-.|+|-+...+ |.|.-+-. . .+.-++.+ .++-.|+-+++||.+-.+|++...
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t--~------~~tt~f~~--------~sgqsvRll~ys~skr~lL~~asd 185 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKT--K------QKTTTFTI--------DSGQSVRLLRYSPSKRFLLSIASD 185 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEeccc--C------ccccceec--------CCCCeEEEeecccccceeeEeecc
Confidence 3566777777777777654432 22222210 0 11112222 223356789999999999999999
Q ss_pred CCeEEEEecc
Q 005546 185 DSVFRLFNLA 194 (691)
Q Consensus 185 Dn~iRlydl~ 194 (691)
|+++.+||++
T Consensus 186 ~G~VtlwDv~ 195 (673)
T KOG4378|consen 186 KGAVTLWDVQ 195 (673)
T ss_pred CCeEEEEecc
Confidence 9999999997
No 158
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.61 E-value=1.1e+02 Score=37.14 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=52.8
Q ss_pred CccceEEEEEecCCC-CEEEEEecCCeEEEEeccCCCCC-CcEEEEcccCCCCCCCCCCC--CceEEEEecCCC------
Q 005546 162 NVIRTLQVSWHPYSD-THLGILSSDSVFRLFNLASDVMQ-PEQEYYLQPVEPGRYRNAAS--ICPVDFSFGGDH------ 231 (691)
Q Consensus 162 ~~~~I~qv~WHP~sd-s~LvVLTsDn~iRlydl~~~~~~-p~q~~~L~~~~~g~s~~~s~--~~avsf~FG~~~------ 231 (691)
...+|+.+.|-|.+. .--+|+++||++..|.+..+... |+ -... ++....| .++-++||+.++
T Consensus 319 ~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~-~~~~------~~i~~~GHR~dVRsl~vS~d~~~~~Sg 391 (888)
T KOG0306|consen 319 TSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPE-ADRT------SNIEIGGHRSDVRSLCVSSDSILLASG 391 (888)
T ss_pred chhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcc-cccc------ceeeeccchhheeEEEeecCceeeeec
Confidence 556899999999983 23456688899999999863222 21 0011 1111112 378889998752
Q ss_pred ------CCCceEEEEEecCCcEEEEcccCCC
Q 005546 232 ------LWDRFSVFVLFSDGSIYILCPVVPF 256 (691)
Q Consensus 232 ------~W~~~TLyiL~~~GDIYalcP~lP~ 256 (691)
.|..=|+=.+..=++.|++|-++-.
T Consensus 392 a~~SikiWn~~t~kciRTi~~~y~l~~~Fvp 422 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCGYILASKFVP 422 (888)
T ss_pred CCCcEEEEEccCcceeEEeccccEEEEEecC
Confidence 3555554444444445888766533
No 159
>PRK01742 tolB translocation protein TolB; Provisional
Probab=28.77 E-value=7.3e+02 Score=27.82 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=40.9
Q ss_pred eEEEeCCCCCEEEEEecC----eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 109 SRISINRNGSALLLIGSD----GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 109 ~~i~lSpsG~~LAl~G~~----~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
..+..||+|+.|++...+ .|.++.+.. .. .+.+ + .....+....|.|.+..-+.+-..
T Consensus 251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~-------~~--~~~l--------t-~~~~~~~~~~wSpDG~~i~f~s~~ 312 (429)
T PRK01742 251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANG-------GT--PSQL--------T-SGAGNNTEPSWSPDGQSILFTSDR 312 (429)
T ss_pred CceeECCCCCEEEEEEecCCcEEEEEEECCC-------CC--eEee--------c-cCCCCcCCEEECCCCCEEEEEECC
Confidence 467899999999987532 244444421 11 1111 1 112246678899975433333334
Q ss_pred CCeEEEEeccCCCC
Q 005546 185 DSVFRLFNLASDVM 198 (691)
Q Consensus 185 Dn~iRlydl~~~~~ 198 (691)
++..++|+++.+..
T Consensus 313 ~g~~~I~~~~~~~~ 326 (429)
T PRK01742 313 SGSPQVYRMSASGG 326 (429)
T ss_pred CCCceEEEEECCCC
Confidence 67899999875433
No 160
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=27.86 E-value=2e+02 Score=32.00 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=64.0
Q ss_pred EEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEE
Q 005546 111 ISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRL 190 (691)
Q Consensus 111 i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRl 190 (691)
..+||+|+|+|......+.|=.- .+++|. | +|+.-. .|+.+.|--.+.-.|.+++.|..|.+
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~--------------~tlq~~-q-lf~cld--ki~yieW~ads~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDS--------------ETLQLH-Q-LFLCLD--KIVYIEWKADSCHILCVAYKDPKVQV 75 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEecc--------------chhhHH-H-HHHHHH--HhhheeeeccceeeeeeeeccceEEE
Confidence 46899999999998885554211 123333 2 233322 58889999767778889999999999
Q ss_pred EeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCC----CC----CceEEEEEecC
Q 005546 191 FNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDH----LW----DRFSVFVLFSD 244 (691)
Q Consensus 191 ydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~----~W----~~~TLyiL~~~ 244 (691)
|++.. ||=...+.. |. .-.++++.+|++ .| .+.|+|-|...
T Consensus 76 wsl~Q----pew~ckIde---g~------agls~~~WSPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 76 WSLVQ----PEWYCKIDE---GQ------AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred EEeec----ceeEEEecc---CC------CcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence 99863 432333321 10 124556666652 22 36777777653
No 161
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=27.40 E-value=2.4e+02 Score=33.75 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=56.9
Q ss_pred eeeeEEEeCCCCCEEEEEecCe-EEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceE-EEEEecCCCCEEEEEe
Q 005546 106 FEVSRISINRNGSALLLIGSDG-LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTL-QVSWHPYSDTHLGILS 183 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~G~~~-V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~-qv~WHP~sds~LvVLT 183 (691)
-.|..+..||.-.++|+.+..+ |.+.++. |. |-+.+. .++..+. ...|.|. +.-|+|=.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~q---------Rlwtip-------~p~~~v~~sL~W~~D-GkllaVg~ 81 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQ---------RLWTIP-------IPGENVTASLCWRPD-GKLLAVGF 81 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cc---------eeEecc-------CCCCccceeeeecCC-CCEEEEEe
Confidence 4789999999999999999988 8888887 43 233332 1233344 8899999 88999999
Q ss_pred cCCeEEEEeccCC
Q 005546 184 SDSVFRLFNLASD 196 (691)
Q Consensus 184 sDn~iRlydl~~~ 196 (691)
+|++||+-|+.++
T Consensus 82 kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 82 KDGTIRLHDVEKG 94 (665)
T ss_pred cCCeEEEEEccCC
Confidence 9999999999864
No 162
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.38 E-value=2.8e+02 Score=32.84 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=22.9
Q ss_pred cceEEEEEecCCCCEEEEEecCCeEEEEeccCC
Q 005546 164 IRTLQVSWHPYSDTHLGILSSDSVFRLFNLASD 196 (691)
Q Consensus 164 ~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~ 196 (691)
.....++|||.| .-++|-.+-+.|.+||+..+
T Consensus 300 ~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 300 FIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence 346788999964 33444455599999999864
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=27.14 E-value=54 Score=36.21 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=25.6
Q ss_pred ceEEEEEecCCCCEEEEEecCCeEEEEeccCC
Q 005546 165 RTLQVSWHPYSDTHLGILSSDSVFRLFNLASD 196 (691)
Q Consensus 165 ~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~ 196 (691)
-.+-..|-|. ++||++++.||++++||+-.+
T Consensus 51 f~kgckWSPD-GSciL~~sedn~l~~~nlP~d 81 (406)
T KOG2919|consen 51 FLKGCKWSPD-GSCILSLSEDNCLNCWNLPFD 81 (406)
T ss_pred hhccceeCCC-CceEEeecccCeeeEEecChh
Confidence 3566778776 489999999999999999653
No 164
>PRK02889 tolB translocation protein TolB; Provisional
Probab=27.06 E-value=9.3e+02 Score=26.99 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=38.8
Q ss_pred eeEEEeCCCCCEEEEEec----CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 108 VSRISINRNGSALLLIGS----DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 108 I~~i~lSpsG~~LAl~G~----~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
+.....||+|+.||+..+ ..|.++.+.. + .+ ..+ +.. ...+....|+|.+..-+.+-.
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~-----~~----~~l------t~~-~~~~~~~~wSpDG~~l~f~s~ 303 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADG--S-----GL----RRL------TQS-SGIDTEPFFSPDGRSIYFTSD 303 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCC--C-----Cc----EEC------CCC-CCCCcCeEEcCCCCEEEEEec
Confidence 456789999999998643 2344444421 1 11 111 111 112345679886543333322
Q ss_pred cCCeEEEEeccCCCCC
Q 005546 184 SDSVFRLFNLASDVMQ 199 (691)
Q Consensus 184 sDn~iRlydl~~~~~~ 199 (691)
.++...+|.++.+...
T Consensus 304 ~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 304 RGGAPQIYRMPASGGA 319 (427)
T ss_pred CCCCcEEEEEECCCCc
Confidence 2367788887654433
No 165
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=26.89 E-value=58 Score=26.53 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=31.0
Q ss_pred HHHHHHhhHhHHHHHHHHHHhhhhhhhhcccccccccccccc
Q 005546 625 FNLFQENYVEYAHKVRKLYLNHIKLVLFTSYSMSIEHQDLCG 666 (691)
Q Consensus 625 ~~~l~~~y~~~~~kv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (691)
...|-|.|..--.|-|+|++++++=-.---++++.+-++|||
T Consensus 11 LDqFMeaYc~~L~kykeeL~~p~~EA~~f~~~ie~qL~~Lt~ 52 (52)
T PF03791_consen 11 LDQFMEAYCDMLVKYKEELQRPFQEAMEFCREIEQQLSSLTG 52 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356788888888899999999998444445556666666665
No 166
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=26.86 E-value=5.4e+02 Score=28.09 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=38.8
Q ss_pred eeEEEeCCCCCEEEEEec----CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEe
Q 005546 108 VSRISINRNGSALLLIGS----DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (691)
Q Consensus 108 I~~i~lSpsG~~LAl~G~----~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLT 183 (691)
+....+||+|++||.... ..|.++.+... . . + .+. .. ...+..+.|+|.+..-++...
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g--~-----~--~--~~~------~~-~~~~~~~~~spDg~~l~~~~~ 253 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG--Q-----R--E--KVA------SF-PGMNGAPAFSPDGSKLAVSLS 253 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCC--C-----E--E--Eee------cC-CCCccceEECCCCCEEEEEEC
Confidence 556678999999998753 46777766421 1 1 0 111 00 112345789997654444555
Q ss_pred cCC--eEEEEecc
Q 005546 184 SDS--VFRLFNLA 194 (691)
Q Consensus 184 sDn--~iRlydl~ 194 (691)
.++ .|.+||+.
T Consensus 254 ~~~~~~i~~~d~~ 266 (417)
T TIGR02800 254 KDGNPDIYVMDLD 266 (417)
T ss_pred CCCCccEEEEECC
Confidence 554 46666665
No 167
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=26.41 E-value=9e+02 Score=26.66 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=65.1
Q ss_pred EEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEE
Q 005546 111 ISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFR 189 (691)
Q Consensus 111 i~lSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iR 189 (691)
+...|+|-+.|+.... .|-+-.+- +. |+++. .++.++. +...+..++.+-|. +.+|++=|+++.+.
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~R---s~-dkgPF--~tf~i~~------~~~~ew~~l~FS~d-GK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLR---SF-DKGPF--TTFSITD------NDEAEWTDLEFSPD-GKSILLSTNASFIY 212 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEec---cc-CCCCc--eeEccCC------CCccceeeeEEcCC-CCEEEEEeCCCcEE
Confidence 4578888888887665 44444442 22 33332 2444431 23345555655554 35677788889999
Q ss_pred EEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEE
Q 005546 190 LFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 190 lydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYal 250 (691)
+.|.- +++ ..++|...+ + .+....+++|.|++ .-++.-..||-|++=
T Consensus 213 ~lDAf-~G~-~~~tfs~~~-------~-~~~~~~~a~ftPds----~Fvl~gs~dg~i~vw 259 (311)
T KOG1446|consen 213 LLDAF-DGT-VKSTFSGYP-------N-AGNLPLSATFTPDS----KFVLSGSDDGTIHVW 259 (311)
T ss_pred EEEcc-CCc-EeeeEeecc-------C-CCCcceeEEECCCC----cEEEEecCCCcEEEE
Confidence 99986 344 445666643 1 13345889999962 223333346766653
No 168
>PRK04922 tolB translocation protein TolB; Provisional
Probab=26.11 E-value=9.6e+02 Score=26.85 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=19.2
Q ss_pred eEEEeCCCCCEEEEEe----cCeEEEEEeC
Q 005546 109 SRISINRNGSALLLIG----SDGLCVMYLY 134 (691)
Q Consensus 109 ~~i~lSpsG~~LAl~G----~~~V~Vv~LP 134 (691)
....+||+|+.|++.. ...|.++.+.
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 3678999999998763 3467777664
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=25.40 E-value=1.4e+03 Score=28.47 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=48.7
Q ss_pred eEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceEE-EEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCe
Q 005546 109 SRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIIC-RTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSV 187 (691)
Q Consensus 109 ~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~d~~~i~c-rt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~ 187 (691)
+-|+.|+.|.+-.++-...+++...|... . ..| +...+ +++ -.+.-++.||.+ .+++.--+|+.
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~-----~~~~~~~~~----~Ht----f~~t~~~~spn~-~~~Aa~d~dGr 228 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT-K-----HTSSRDITV----HHT----FNITCVALSPNE-RYLAAGDSDGR 228 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc-e-----eeccchhhh----hhc----ccceeEEecccc-ceEEEeccCCc
Confidence 45899999999999999999999998531 0 011 01111 111 125667777764 57777888899
Q ss_pred EEEEeccC
Q 005546 188 FRLFNLAS 195 (691)
Q Consensus 188 iRlydl~~ 195 (691)
|++|.=..
T Consensus 229 I~vw~d~~ 236 (792)
T KOG1963|consen 229 ILVWRDFG 236 (792)
T ss_pred EEEEeccc
Confidence 99997653
No 170
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=25.33 E-value=1.8e+02 Score=32.23 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=55.4
Q ss_pred eeeeEEEeCCCCCEEEEE-ecCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEec
Q 005546 106 FEVSRISINRNGSALLLI-GSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 106 feI~~i~lSpsG~~LAl~-G~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
-+|..+.+|.+|++||-+ |++.|.|-.+-+ |....-+|--.+|. ... -..|+|-|...+-+|-+-+
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D----F~~~eHr~~R~nve-----~dh----pT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRD----FENKEHRCIRQNVE-----YDH----PTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecch----hhhhhhhHhhcccc-----CCC----ceEEEECCCcceEEEEEcc
Confidence 489999999999999975 777777777653 22223334333332 111 2567888998899999999
Q ss_pred CCeEEEEeccC
Q 005546 185 DSVFRLFNLAS 195 (691)
Q Consensus 185 Dn~iRlydl~~ 195 (691)
.|.||+|-+.+
T Consensus 154 g~~l~vyk~~K 164 (420)
T KOG2096|consen 154 GNKLCVYKLVK 164 (420)
T ss_pred CCEEEEEEeee
Confidence 99999999976
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=25.29 E-value=4e+02 Score=31.67 Aligned_cols=123 Identities=12% Similarity=0.048 Sum_probs=73.6
Q ss_pred CCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCC
Q 005546 61 ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCS 139 (691)
Q Consensus 61 ~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~ 139 (691)
+-..|++--.+++++..+.+...+..+ ..|+.+..-..=...|+.+..||=+..+-+.+- -+|.| |+.
T Consensus 359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~-----~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vri------Ws~ 427 (555)
T KOG1587|consen 359 DPNHFIVGTEEGKVYKGCRKGYTPAPE-----VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRI------WSE 427 (555)
T ss_pred CCceEEEEcCCcEEEEEeccCCccccc-----ccccccccccccCcceEeeecCCCccceeeeeccceeEe------ccc
Confidence 445566666677777665433332211 223433211111246889999999887776543 33332 432
Q ss_pred CCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCcEEE
Q 005546 140 SDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEY 204 (691)
Q Consensus 140 ~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~~~p~q~~ 204 (691)
. |++.++ +........|..++|-|-.-+.+++...|+.|-+|||..+...|....
T Consensus 428 ~------~~~~Pl----~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~ 482 (555)
T KOG1587|consen 428 D------VIASPL----LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ 482 (555)
T ss_pred c------CCCCcc----hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc
Confidence 1 111122 111122234889999999999999999999999999998877775433
No 172
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=25.23 E-value=9.1e+02 Score=26.31 Aligned_cols=155 Identities=18% Similarity=0.290 Sum_probs=91.1
Q ss_pred CceEEEEeCCCeEEEEECCc-ceEEEEEeecCC------CCCC--------c---cccCCCceEEecCCCCceeeeEEEe
Q 005546 52 PKNLVAWDGASRLYYWDQNA-QCLHRISVRLGE------PDPT--------S---ILAAFPSKVMRADVKLNFEVSRISI 113 (691)
Q Consensus 52 ~rnlla~~g~~~Lfvw~~n~-~~l~~~~lR~~~------~~~~--------~---~~~~~~yk~L~~~~pl~feI~~i~l 113 (691)
|-.+++..++..+-+||... .|..+++.+..+ +..+ . ..-...||.+.. .+..|++..+.-
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-~~~~~e~ne~~w 155 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-EQFKFEVNEISW 155 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh-hcccceeeeeee
Confidence 33455556677788887754 566666555542 1100 0 011335777774 455789999999
Q ss_pred CCCCCEEEEE-ecCeEEEEEeCCCCCCC--CCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEE
Q 005546 114 NRNGSALLLI-GSDGLCVMYLYGRTCSS--DNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRL 190 (691)
Q Consensus 114 SpsG~~LAl~-G~~~V~Vv~LP~~~~~~--d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRl 190 (691)
|.++++.-+- |--.|.|+.-|.--.-. ..-+..|-++.++|. +.++.|=.+|+.+-+
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~--------------------GryfA~GsADAlvSL 215 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD--------------------GRYFATGSADALVSL 215 (313)
T ss_pred cCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC--------------------CceEeeccccceeec
Confidence 9777766664 66899999998321100 011344555555542 346777788999999
Q ss_pred EeccC--------CCCCCcEEEEcccCCCCCCC-CCCCCceEEEEecC
Q 005546 191 FNLAS--------DVMQPEQEYYLQPVEPGRYR-NAASICPVDFSFGG 229 (691)
Q Consensus 191 ydl~~--------~~~~p~q~~~L~~~~~g~s~-~~s~~~avsf~FG~ 229 (691)
||++- ..+-|.-+++++- .|+-. .++..-.+++++-+
T Consensus 216 WD~~ELiC~R~isRldwpVRTlSFS~--dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 216 WDVDELICERCISRLDWPVRTLSFSH--DGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred cChhHhhhheeeccccCceEEEEecc--CcceeeccCccceEEeEecc
Confidence 99973 2334555555542 33322 23345677777775
No 173
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=24.49 E-value=1.9e+02 Score=32.57 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=44.5
Q ss_pred eeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecC
Q 005546 107 EVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsD 185 (691)
-+.++.+||++++++-.-. ..|-|...|... + -++|.+|-+ .|-+..+ +.+ +-+|+==.-|
T Consensus 153 ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f---~-----IesfclGH~-eFVS~is--l~~-------~~~LlS~sGD 214 (390)
T KOG3914|consen 153 MLLDVAVSPDDQFIITADRDEKIRVSRYPATF---V-----IESFCLGHK-EFVSTIS--LTD-------NYLLLSGSGD 214 (390)
T ss_pred hhheeeecCCCCEEEEecCCceEEEEecCccc---c-----hhhhccccH-hheeeee--ecc-------CceeeecCCC
Confidence 3568899999988877654 367888887432 1 123444422 2211111 110 1122222348
Q ss_pred CeEEEEeccCCCCCCcEEEEcc
Q 005546 186 SVFRLFNLASDVMQPEQEYYLQ 207 (691)
Q Consensus 186 n~iRlydl~~~~~~p~q~~~L~ 207 (691)
++||+||+.. +..+ .+++++
T Consensus 215 ~tlr~Wd~~s-gk~L-~t~dl~ 234 (390)
T KOG3914|consen 215 KTLRLWDITS-GKLL-DTCDLS 234 (390)
T ss_pred CcEEEEeccc-CCcc-cccchh
Confidence 9999999984 4434 355554
No 174
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=24.22 E-value=1.3e+03 Score=27.76 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=61.9
Q ss_pred CCeEEEEECCcceEEEEEeecCCCCCCccccCCCceEEecCCCCceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCC
Q 005546 61 ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSS 140 (691)
Q Consensus 61 ~~~Lfvw~~n~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pl~feI~~i~lSpsG~~LAl~G~~~V~Vv~LP~~~~~~ 140 (691)
.-+||++ +....+|++|+..+.- -+-+.++. -++..+.+|+--.+||.=|..+++=.-=| ...
T Consensus 145 scDly~~-gsg~evYRlNLEqGrf----------L~P~~~~~---~~lN~v~in~~hgLla~Gt~~g~VEfwDp--R~k- 207 (703)
T KOG2321|consen 145 SCDLYLV-GSGSEVYRLNLEQGRF----------LNPFETDS---GELNVVSINEEHGLLACGTEDGVVEFWDP--RDK- 207 (703)
T ss_pred CccEEEe-ecCcceEEEEcccccc----------cccccccc---ccceeeeecCccceEEecccCceEEEecc--hhh-
Confidence 4556664 4566788888865531 11122211 36778999999888887776665433112 111
Q ss_pred CCCceEEEEEEecceeeeec----CCccceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 141 DNKTIICRTVSVGSQIYFSS----SNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 141 d~~~i~crt~~v~~~~~~~s----~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
-.|.++.++.+ +.+ +....|..+.|-- .+=|+.|=|+++.+-||||..
T Consensus 208 ----srv~~l~~~~~--v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 208 ----SRVGTLDAASS--VNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred ----hhheeeecccc--cCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEccc
Confidence 12445444422 111 1222233333322 256899999999999999964
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=24.04 E-value=4.9e+02 Score=26.20 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=23.8
Q ss_pred CccceEEEEEecCCCCEEEEEecCCeEEEEecc
Q 005546 162 NVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 162 ~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~ 194 (691)
+...|..+.|+|.+...++-...|+.+++||..
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~ 229 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence 456799999997777222223689999999765
No 176
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=23.08 E-value=1e+03 Score=26.24 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=27.8
Q ss_pred CccceEEEEEecCCCCEEEEEecCCeEEEEeccCCC
Q 005546 162 NVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDV 197 (691)
Q Consensus 162 ~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~~~ 197 (691)
..+.|-.|+|||.++. ++.=..|++.|+||+..|-
T Consensus 228 hesDINsv~ffP~G~a-fatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 228 HESDINSVRFFPSGDA-FATGSDDATCRLYDLRADQ 262 (343)
T ss_pred cccccceEEEccCCCe-eeecCCCceeEEEeecCCc
Confidence 3568999999998853 5566789999999997653
No 177
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=23.03 E-value=1.2e+02 Score=35.13 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=23.1
Q ss_pred cceEEEEEecC---CCCEEEEEecCCeEEEEeccC
Q 005546 164 IRTLQVSWHPY---SDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 164 ~~I~qv~WHP~---sds~LvVLTsDn~iRlydl~~ 195 (691)
........++. .+.+|++|+-|++||+||+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t 249 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLET 249 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTT
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCC
Confidence 34566677773 378999999999999999974
No 178
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=22.51 E-value=5.6e+02 Score=26.74 Aligned_cols=69 Identities=10% Similarity=0.178 Sum_probs=45.3
Q ss_pred eeeEEEeCCCCCEEEEEe----cCeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEE
Q 005546 107 EVSRISINRNGSALLLIG----SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 107 eI~~i~lSpsG~~LAl~G----~~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
.|..+.+||+|+-+|++- ...|.|..+-+.... .....-.-..+. ......+..+.|-+. +.|+||
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g--~~~~l~~~~~~~------~~~~~~v~~v~W~~~--~~L~V~ 182 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG--VPRRLTGPRRVA------PPLLSDVTDVAWSDD--STLVVL 182 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC--CcceeccceEec------ccccCcceeeeecCC--CEEEEE
Confidence 799999999999999987 788998888533211 011111112222 122457899999765 468888
Q ss_pred ecC
Q 005546 183 SSD 185 (691)
Q Consensus 183 TsD 185 (691)
+..
T Consensus 183 ~~~ 185 (253)
T PF10647_consen 183 GRS 185 (253)
T ss_pred eCC
Confidence 874
No 179
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=22.20 E-value=1.1e+03 Score=26.30 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=24.3
Q ss_pred cceEEEEEecCCCCEEEEEecCCeEEEEecc
Q 005546 164 IRTLQVSWHPYSDTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 164 ~~I~qv~WHP~sds~LvVLTsDn~iRlydl~ 194 (691)
..|+|+.. +--+.+|++=|+|.+||.|+++
T Consensus 197 ~~IK~I~~-s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 197 QAIKQIIV-SRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred eeeeEEEE-eccCcEEEEecCCceEEEEehh
Confidence 45777754 3347899999999999999997
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.63 E-value=6.6e+02 Score=32.32 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=43.7
Q ss_pred CCEEEEEecCCeEEEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCce-EEEEEecCCcEEEEcccC
Q 005546 176 DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRF-SVFVLFSDGSIYILCPVV 254 (691)
Q Consensus 176 ds~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~-TLyiL~~~GDIYalcP~l 254 (691)
++-+++=++|+.+|+||...... +--+. .-|..+. -+.++-..|-.. +| -|+-...|||||.+-+-+
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~--ds~v~-----~~R~h~~-~~~Iv~~slq~~----G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPP--DSLVC-----VYREHND-VEPIVHLSLQRQ----GLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred CceEEEeecCCceEEeecccCCc--cccce-----eecccCC-cccceeEEeecC----CCcceeeeccCCeEEEEeccc
Confidence 67888999999999999864322 10011 1112222 123777777763 33 477778899999998887
Q ss_pred C
Q 005546 255 P 255 (691)
Q Consensus 255 P 255 (691)
+
T Consensus 1289 ~ 1289 (1387)
T KOG1517|consen 1289 S 1289 (1387)
T ss_pred C
Confidence 5
No 181
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=20.48 E-value=2.3e+02 Score=33.92 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=28.2
Q ss_pred ceEEEEEecCCCCEEEEEecCCeEEEEeccC
Q 005546 165 RTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 165 ~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
.|-++.|-| ++.+||.-.-|.++|+||+..
T Consensus 102 AifDl~wap-ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 102 AIFDLKWAP-GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred eeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence 589999999 999999999999999999974
No 182
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=20.43 E-value=1.2e+03 Score=25.91 Aligned_cols=115 Identities=11% Similarity=0.119 Sum_probs=61.7
Q ss_pred EEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeE
Q 005546 110 RISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVF 188 (691)
Q Consensus 110 ~i~lSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~i 188 (691)
.+.++|+|+++.+.+. ..|.|++|... . .-+++++|.. -..+..-|.+.--+|.-..++.+
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~-------~-~v~~i~~G~~----------~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATG-------K-VVATIKVGGN----------PRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSS-------S-EEEEEE-SSE----------EEEEEE--TTTEEEEEEEETTEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcc-------c-EEEEEecCCC----------cceEEEcCCCCEEEEEecCCCce
Confidence 4668999999999874 58999988733 1 2456666643 13344445554445555678999
Q ss_pred EEEeccCCCCCCcEEEEcccCCCCCCCCCCCCceEEEEecCCCCCCceEEEEEecCCcEEEEc
Q 005546 189 RLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC 251 (691)
Q Consensus 189 Rlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsf~FG~~~~W~~~TLyiL~~~GDIYalc 251 (691)
.++|.. ..++.+++...... .+.....++++-..+. .+.-++-++..|.|+.+-
T Consensus 103 ~v~D~~--tle~v~~I~~~~~~----~~~~~~Rv~aIv~s~~---~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 103 SVIDAE--TLEPVKTIPTGGMP----VDGPESRVAAIVASPG---RPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEETT--T--EEEEEE--EE-----TTTS---EEEEEE-SS---SSEEEEEETTTTEEEEEE
T ss_pred eEeccc--cccceeeccccccc----ccccCCCceeEEecCC---CCEEEEEEccCCeEEEEE
Confidence 999985 34455555442211 1111223455555543 233455567779998774
No 183
>PRK02888 nitrous-oxide reductase; Validated
Probab=20.39 E-value=2.7e+02 Score=33.53 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=57.6
Q ss_pred CCceeeeEEEeCCCCCEEEEEec--CeEEEEEeCCCCCCCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEE
Q 005546 103 KLNFEVSRISINRNGSALLLIGS--DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLG 180 (691)
Q Consensus 103 pl~feI~~i~lSpsG~~LAl~G~--~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~Lv 180 (691)
|+.-....+-+||+|+|+.+.|. .+|+|+++-..-..+++. ++-|..-++ +.-+ ++.=+++.|-+. +...+
T Consensus 318 PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-~~~~~~vva-evev----GlGPLHTaFDg~-G~ayt 390 (635)
T PRK02888 318 PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-IKPRDAVVA-EPEL----GLGPLHTAFDGR-GNAYT 390 (635)
T ss_pred ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-CCccceEEE-eecc----CCCcceEEECCC-CCEEE
Confidence 44557889999999999999975 699999997543222221 233332222 1111 223467777444 46889
Q ss_pred EEecCCeEEEEeccC
Q 005546 181 ILSSDSVFRLFNLAS 195 (691)
Q Consensus 181 VLTsDn~iRlydl~~ 195 (691)
.|.-|+.|--||+..
T Consensus 391 slf~dsqv~kwn~~~ 405 (635)
T PRK02888 391 TLFLDSQIVKWNIEA 405 (635)
T ss_pred eEeecceeEEEehHH
Confidence 999999999999985
No 184
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=20.16 E-value=2.5e+02 Score=31.75 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=34.5
Q ss_pred EEEEEecCeEEEEEeCCCCC--CCCCCceEEEEEEecceeeeecCCccceEEEEEecCCCCEEEEEecCCeEEEEecc
Q 005546 119 ALLLIGSDGLCVMYLYGRTC--SSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLA 194 (691)
Q Consensus 119 ~LAl~G~~~V~Vv~LP~~~~--~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn~iRlydl~ 194 (691)
++.+++++++.|+.+|..-. +..+..+.|....+-+. . . =.++.+||.|++|+.+|+|.|-
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~--~---------~----~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPT--I---------S----RNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEE--E--------------EEEEEEEEEEETTSEEEEEETT
T ss_pred EEEEEcccceEEEeCCCCcccceeeccccccceEEEEee--c---------c----cCCceEEEEEECCCcEEEEECC
Confidence 77788899999998884421 10122233433322110 0 0 1126899999999999999995
Done!