Query 005546
Match_columns 691
No_of_seqs 176 out of 189
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 17:55:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005546.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2055-2059//hhsearch_pdb/005546hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pbp_A Nucleoporin NUP82; beta 1.0 1 1 491.9 34.0 374 29-496 7-395 (452)
2 2oit_A Nucleoporin 214KDA; NH2 1.0 1 1 36.0 17.0 123 104-251 91-220 (434)
3 2xyi_A Probable histone-bindin 1.0 1 1 35.1 19.3 128 105-250 128-259 (430)
4 4e54_B DNA damage-binding prot 1.0 1 1 33.7 15.0 117 105-251 119-237 (435)
5 4g56_B MGC81050 protein; prote 1.0 1 1 33.5 12.8 118 105-250 42-166 (357)
6 2j04_A TAU60, YPL007P, hypothe 1.0 1 1 32.9 13.6 79 107-195 131-211 (588)
7 3zwl_B Eukaryotic translation 1.0 1 1 32.6 18.3 121 106-250 75-202 (369)
8 4e54_B DNA damage-binding prot 1.0 1 1 32.0 9.4 111 105-248 164-276 (435)
9 3vl1_A 26S proteasome regulato 1.0 1 1 31.4 16.0 109 108-251 100-209 (420)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 31.3 15.7 31 164-195 212-242 (902)
No 1
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=1.00 E-value=1 Score=491.94 Aligned_cols=374 Identities=16% Similarity=0.190 Sum_probs=295.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCE-E
Q ss_conf 899965335767779999878997028999599759999889615999975318999975224788448734877731-2
Q 005546 29 LQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNF-E 107 (691)
Q Consensus 29 l~~hpiF~~~~~~~~~~~~~~~~~rnlla~~g~~~Lfvw~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~pi~f-e 107 (691)
+..-|||++.... . .++|+.+.|+++++||++++|+ +|++.-.+ ..+||+|+....+.| +
T Consensus 7 ~~~~pif~~~~~~------~-~s~R~~~~~~n~t~i~~a~~n~-------iR~~~i~~-----~~~Yk~L~~~~~i~f~~ 67 (452)
T 3pbp_A 7 LSALPIFQASLSA------S-QSPRYIFSSQNGTRIVFIQDNI-------IRWYNVLT-----DSLYHSLNFSRHLVLDD 67 (452)
T ss_dssp CCCCTTTCC-------------CCEEEEEETTTTEEEEEETTE-------EEEEETTT-----CSSCEEEECTTTCCCCT
T ss_pred EEEEEECCCCCCC------C-CCCCEEEEECCCCEEEEEECCE-------EEEEECCC-----CCCCEEEECCCCCCCCC
T ss_conf 1453201454345------7-7885799982897899997999-------99977788-----88605873676566675
Q ss_pred EEEEEECCCCCEEEEEECCEEEEEEECCC-CCCCC-C--CCEEEEEEEECCEEEEECCCCCCEEEEEEECCC--CCEEEE
Q ss_conf 54899699999899992683999995899-88889-9--712777999545345403784114899996189--977999
Q 005546 108 VSRISINRNGSALLLIGSDGLCVMYLYGR-TCSSD-N--KTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--DTHLGI 181 (691)
Q Consensus 108 I~qi~iSpsG~~LAl~G~~~V~Vv~LP~~-~~~~d-~--~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~s--ds~LvV 181 (691)
|+|+++||+|+|||++|+|+|+|++||.+ +...+ + ..+.||+|++|+. ..+++++|+||+|||+| |+||||
T Consensus 68 i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~---~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 68 TFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE---EVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC---C--CCCCEEEEEECTTBGGGCEEEE
T ss_pred EEEEEECCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCC---CCCCCCCEEEEEECCCCCCCCEEEE
T ss_conf 3499999999879996498699999258424676655565321469973774---5578786669994436678986999
Q ss_pred EECCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEE--CCCCEEEECCCCCCCCC
Q ss_conf 9249848999546899997279982448998879999973179980179999835999991--38829997556789998
Q 005546 182 LSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLF--SDGSIYILCPVVPFGSV 259 (691)
Q Consensus 182 LTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~--~~GDIYalcP~lP~~~~ 259 (691)
||+||+||+||++++.++|. +|+....+++.+...++++|||||+ ++||||+|| ++|||||+||++|++|+
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~---~L~k~~~~fg~d~~~~ev~S~~Fg~----~~lTLYvl~~t~~GDIYAlcP~LP~~~~ 217 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI---VLNKPNNSFGLDARVNDITDLEFSK----DGLTLYCLNTTEGGDIFAFYPFLPSVLL 217 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE---EESCCCSEEESCSSCCCEEEEEECT----TSSCEEEEECTTSCEEEEESSCCCSEEE
T ss_pred EECCCEEEEEECCCCCCCCC---CHHCCCCCCCCCCCCCEEEEEEECC----CCCEEEEEECCCCCCEEEECCCCCCCCC
T ss_conf 94698799997136777771---1102465458873434478999769----9848999805889878998877750016
Q ss_pred CCHHHHHHHHHHHCCCCCCCC--C-HHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEC
Q ss_conf 785679998732100000013--4-1544204899999996161000145788999831124686679962110774405
Q 005546 260 YKWESILEIYNDAQTFGLRSV--N-SLAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRKI 336 (691)
Q Consensus 260 ~~~~~I~~L~~~~~~~~~~~~--~-~~~~~~a~~Ql~Wl~~l~~q~~~~~~~~~~~~~v~~~p~~~~~~~p~LQGPf~~~ 336 (691)
++++.|++|.+...+.....+ . +.++++++||++|++++.+|...+.. .+ +. ..+.|.+++||||.|+
T Consensus 218 ~~~s~i~~L~~ks~~~~~~l~~~~~~~~k~~~~qQl~~~s~L~~q~~~~~~------~~--~i-~~~~r~~~~qgpf~i~ 288 (452)
T 3pbp_A 218 LNEKDLNLILNKSLVMYESLDSTTDVIVKRNVIKQLQFVSKLHENWNSRFG------KV--DI-QKEYRLAKVQGPFTIN 288 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCSSSCHHHHHHHHHHHHHHHHHHHHCBTTTT------EE--EC-CGGGGCCCCBCCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC------CC--CC-CHHHHCCCCCCCEECC
T ss_conf 698999999999999987531368889999999999999999887872378------60--57-1587334246861037
Q ss_pred CCCCCCCHHHHHCCCCCCCCCEEEEECC--CCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 8999982123201333344004587204--78729999945875799843278863125689998523753212332200
Q 005546 337 CHGGEDESLAVRGAECEGRAVSFLYNLV--SKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMI 414 (691)
Q Consensus 337 ~p~~ed~y~~~~~~~c~~~A~~il~~~~--~~~~iL~iA~s~G~v~i~l~~~ev~~~W~~~~~~~~~~~~~~~~~~~a~i 414 (691)
|+++++|+. +|+.|.+++. ++++++|++|++|+|++|+.++|++|+|+.++
T Consensus 289 -P~P~elY~~--------~A~~i~~lpi~~~~~~ll~i~f~dG~v~~l~~d~e~~msW~~~~------------------ 341 (452)
T 3pbp_A 289 -PFPGELYDY--------TATNIATILIDNGQNEIVCVSFDDGSLILLFKDLEMSMSWDVDN------------------ 341 (452)
T ss_dssp -TCCSGGGGS--------CEEEEEEEECSSSSCEEEEEEETTTEEEEEEECSCCCCCSSCTT------------------
T ss_pred -CCCHHHCCC--------CCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCCCCEEECCC------------------
T ss_conf -885365302--------21335899516788509999963987999822776332150567------------------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEEE-EEECCCC
Q ss_conf 035568888412479887643479999830266753158989899960199528999943999965751699-9203235
Q 005546 415 CEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSV-VLHFLPF 493 (691)
Q Consensus 415 ~Es~~~~~~~~~~~~p~~~t~~~~~~p~Ll~le~vdl~l~~~~~~~~~~~l~~Dp~~~~~~~vtH~~GVh~V-sL~Wv~~ 493 (691)
..+..+|.++|+|++.. + .-..++.| ....+|||+|..|||.| .+.|...
T Consensus 342 ----------------------~~~~nSl~lvE~i~l~~--~----~~~~~~~~-~~~g~~~v~~~~~v~~vd~~~W~~~ 392 (452)
T 3pbp_A 342 ----------------------YVYNNSLVLIERVKLQR--E----IKSLITLP-EQLGKLYVISDNIIQQVNFMSWAST 392 (452)
T ss_dssp ----------------------BCSSCEEEEEEEEECCS--C----CCEEECCT-TSTTEEEEECSSEEEEEECHHHHHH
T ss_pred ----------------------CCCCCEEEEEEEEECCC--C----HHHEEECC-CCCCEEEEEECCCEEEEECCCHHHH
T ss_conf ----------------------77777179999997260--0----13206237-8775599962575379962508999
Q ss_pred CCC
Q ss_conf 224
Q 005546 494 TSQ 496 (691)
Q Consensus 494 le~ 496 (691)
|+.
T Consensus 393 L~~ 395 (452)
T 3pbp_A 393 LSK 395 (452)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 2
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=1.00 E-value=1 Score=36.03 Aligned_cols=123 Identities=7% Similarity=0.154 Sum_probs=77.8
Q ss_pred CCEEEEEEEECCCCCEEEE---EEC--CEEEEEEECCCCCC-CC-CCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCC
Q ss_conf 7312548996999998999---926--83999995899888-89-97127779995453454037841148999961899
Q 005546 104 LNFEVSRISINRNGSALLL---IGS--DGLCVMYLYGRTCS-SD-NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSD 176 (691)
Q Consensus 104 i~feI~qi~iSpsG~~LAl---~G~--~~V~Vv~LP~~~~~-~d-~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sd 176 (691)
+...|..+..|++|++||+ .|. ..|.|-.+...... .. ...+ ..+.+ ...+...|..+.|||..+
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~--~~~~~------~~~h~~~V~~v~~~p~~~ 162 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPF--AYHKL------LKDAGGMVIDMKWNPTVP 162 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCS--EEEEC------CCSGGGSEEEEEECSSCT
T ss_pred CCCCCCEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEE--EEEEC------CCCCCCCEEEEEECCCCC
T ss_conf 8886037997589997999971357996699998033346776776403--56631------478887568999789999
Q ss_pred CEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEC
Q ss_conf 779999249848999546899997279982448998879999973179980179999835999991388299975
Q 005546 177 THLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC 251 (691)
Q Consensus 177 s~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYalc 251 (691)
..|++-..|++||+||+... . ..+.... ....+.+++|.+. +-.|+....||.|+..-
T Consensus 163 ~~las~s~Dg~v~iwD~~~~-~---~~~~~~~---------~~~~v~~v~wspd----g~~lasgs~dg~v~iwd 220 (434)
T 2oit_A 163 SMVAVCLADGSIAVLQVTET-V---KVCATLP---------STVAVTSVCWSPK----GKQLAVGKQNGTVVQYL 220 (434)
T ss_dssp TEEEEEETTSCEEEEEESSS-E---EEEEEEC---------GGGCEEEEEECTT----SSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCEEEEEECCCC-C---CEEECCC---------CCCCEEEEEECCC----CCEEEEECCCCCEEEEC
T ss_conf 87999979992999885788-5---2254168---------7786248997688----99899974899489976
No 3
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=1.00 E-value=1 Score=35.08 Aligned_cols=128 Identities=11% Similarity=0.054 Sum_probs=73.8
Q ss_pred CEEEEEEEECCC-CCEEEEEECC-EEEEEEECCCCCCCC-CCCEEE-EEEEECCEEEEECCCCCCEEEEEEECCCCCEEE
Q ss_conf 312548996999-9989999268-399999589988889-971277-799954534540378411489999618997799
Q 005546 105 NFEVSRISINRN-GSALLLIGSD-GLCVMYLYGRTCSSD-NKTIIC-RTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLG 180 (691)
Q Consensus 105 ~feI~qi~iSps-G~~LAl~G~~-~V~Vv~LP~~~~~~d-~~~i~c-rt~~v~~~~~~~s~~~~~I~qv~WHP~sds~Lv 180 (691)
...|..+..+|. ++++|..+.. .|.|..+........ .....+ .++ ......|..+.|+|.+...|+
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL---------RGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE---------ECCSSCCCCEEECTTSTTEEE
T ss_pred CCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEE---------CCCCCCEEEEEECCCCCCEEE
T ss_conf 99377899778999689998799829999777763456755567876793---------389998599886898897599
Q ss_pred EEECCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 9924984899954689999727998244899887999997317998017999983599999138829997
Q 005546 181 ILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 181 VLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYal 250 (691)
+-..|+.|++|++..... ....+... ..+......+.+++|.+. +...+.....+|.|+..
T Consensus 199 s~~~dg~i~vwd~~~~~~-~~~~~~~~-----~~~~~h~~~v~~v~~~p~---~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 199 SASDDHTICLWDINATPK-EHRVIDAK-----NIFTGHTAVVEDVAWHLL---HESLFGSVADDQKLMIW 259 (430)
T ss_dssp EECTTSCEEEEETTSCCB-GGGEEECS-----EEECCCSSCEEEEEECSS---CTTEEEEEETTSEEEEE
T ss_pred EEECCCEEEEEECCCCCC-CCCEECCC-----EEECCCCCCEEEEEEECC---CCCEEEEEECCCEEEEE
T ss_conf 995998099996998778-88443565-----024278987862388079---99989999489969999
No 4
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=1.00 E-value=1 Score=33.66 Aligned_cols=117 Identities=8% Similarity=0.062 Sum_probs=69.3
Q ss_pred CEEEEEEEECCC-CCEEEEEECC-EEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEE
Q ss_conf 312548996999-9989999268-39999958998888997127779995453454037841148999961899779999
Q 005546 105 NFEVSRISINRN-GSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 105 ~feI~qi~iSps-G~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
+..|..|..+|+ +++||.-+.. .|.|-.+.. +... + .+. ...+...|..+.|+|..+..|+.-
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~------~~~~-~-~~~-------~~gH~~~V~~l~f~p~~~~~l~s~ 183 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI------KDKP-T-FIK-------GIGAGGSITGLKFNPLNTNQFYAS 183 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSC------CSCC-E-EEC-------CCSSSCCCCEEEECSSCTTEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCCEEEEEECCC------CCCE-E-EEE-------CCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 998999999189999999991889799997989------9713-6-897-------368999888999907999999999
Q ss_pred ECCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEC
Q ss_conf 249848999546899997279982448998879999973179980179999835999991388299975
Q 005546 183 SSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC 251 (691)
Q Consensus 183 TsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYalc 251 (691)
..|++||+||+... .. +.+ ... ......+.+++|.+. .-.|.....+|.|+..-
T Consensus 184 s~D~~v~iwd~~~~--~~-~~~-~~~-------~~~~~~~~~~~~~~~----~~~l~~g~~dg~i~~wd 237 (435)
T 4e54_B 184 SMEGTTRLQDFKGN--IL-RVF-ASS-------DTINIWFCSLDVSAS----SRMVVTGDNVGNVILLN 237 (435)
T ss_dssp CSSSCEEEEETTSC--EE-EEE-ECC-------SSCSCCCCCEEEETT----TTEEEEECSSSBEEEEE
T ss_pred ECCCEEEEEECCCC--CE-EEE-ECC-------CCCCCCEEEEEECCC----CCEEEEEECCCCEEEEC
T ss_conf 58997999645677--22-588-616-------777753799998999----99999995899676632
No 5
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=1.00 E-value=1 Score=33.53 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=67.3
Q ss_pred CEEEEEEEECCCCCEEEEEECC-------EEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCC
Q ss_conf 3125489969999989999268-------399999589988889971277799954534540378411489999618997
Q 005546 105 NFEVSRISINRNGSALLLIGSD-------GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDT 177 (691)
Q Consensus 105 ~feI~qi~iSpsG~~LAl~G~~-------~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds 177 (691)
.-.|..+.+||+|++||-.+.. .|.+...+. +.. .... |... . .....|..+.|+|. .
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~--~~~-~~~~-~~~~-~--------~~~~~V~~~~~s~d--~ 106 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE--GAP-NESL-CTAG-V--------QTEAGVTDVAWVSE--K 106 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC------CGGG-CSEE-E--------ECSSCEEEEEEETT--T
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCC--CCC-CEEE-ECCC-C--------CCCCCEEEEEECCC--C
T ss_conf 07889999989999999982898713268699978999--871-4058-5024-7--------88798799999689--9
Q ss_pred EEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 7999924984899954689999727998244899887999997317998017999983599999138829997
Q 005546 178 HLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 178 ~LvVLTsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYal 250 (691)
.+++-..|++||+||+..........+... + -...+.+.+|.+. .-.|.....+|.|...
T Consensus 107 ~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~--------~-h~~~V~~v~~spd----g~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 107 GILVASDSGAVELWEILEKESLLVNKFAKY--------E-HDDIVKTLSVFSD----GTQAVSGGKDFSVKVW 166 (357)
T ss_dssp EEEEEETTSCEEEC--------CCCCEEEC--------C-CSSCEEEEEECSS----SSEEEEEETTSCEEEE
T ss_pred CEEEEECCCEEEEEECCCCCEEEEEEECCC--------C-CCCCEEEEEECCC----CCEEEEEECCCEEEEE
T ss_conf 899998999899934456640478742137--------8-8898899999799----8999999698939999
No 6
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=32.88 Aligned_cols=79 Identities=9% Similarity=0.068 Sum_probs=36.0
Q ss_pred EEEEEEECCCCCEEEEEEC-CEEEEEEECCCCCCCCC-CCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 2548996999998999926-83999995899888899-712777999545345403784114899996189977999924
Q 005546 107 EVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDN-KTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 107 eI~qi~iSpsG~~LAl~G~-~~V~Vv~LP~~~~~~d~-~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
.++.+..||+|++||..|. .+|.|-.+-.. .... .-+.-+++..+.. .....|..+.|+|.+ |++-.+
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~--~l~~~~~i~l~ti~~~~~-----gh~~~V~sVawSPdg---Laass~ 200 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKN--SENTPEFYFESSIRLSDA-----GSKDWVTHIVWYEDV---LVAALS 200 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCC--TTTCCCCEEEEEEECSCT-----TCCCCEEEEEEETTE---EEEEET
T ss_pred CEEEEEECCCCCEEEEECCCCEEEEEECCCC--CCCCCCCEEEEEEECCCC-----CCCCCEEEEEECCCC---EEEEEC
T ss_conf 2789999589998999808997999989998--645543203466403565-----653667899986996---799918
Q ss_pred CCEEEEEECCC
Q ss_conf 98489995468
Q 005546 185 DSVFRLFNLAS 195 (691)
Q Consensus 185 Dn~iRlydl~~ 195 (691)
|+++|+||+..
T Consensus 201 D~tVrlWd~~~ 211 (588)
T 2j04_A 201 NNSVFSMTVSA 211 (588)
T ss_dssp TCCEEEECCCS
T ss_pred CCEEEEEECCC
T ss_conf 98599998988
No 7
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=32.61 Aligned_cols=121 Identities=8% Similarity=0.056 Sum_probs=52.7
Q ss_pred EEEEEEEECCCCCEEEEEECC-EEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 125489969999989999268-3999995899888899712777999545345403784114899996189977999924
Q 005546 106 FEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (691)
Q Consensus 106 feI~qi~iSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTs 184 (691)
..|..+.++|+|++++..+.. .|.|..+.. +..+ +.+. ....|..+.|+|.+ ..|++-..
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~--~~~~----------~~~~v~~~~~~~~~-~~l~~~~~ 135 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSN------GQCV--ATWK----------SPVPVKRVEFSPCG-NYFLAILD 135 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTT------CCEE--EEEE----------CSSCEEEEEECTTS-SEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCC------CCEE--EEEE----------CCCCEEEEEECCCC-CEEEEECC
T ss_conf 8479999828998899991897599988889------9688--8741----------58976899981499-87999358
Q ss_pred C-----CEEEEEECCCCCCCCCEEEECCCCCCCCCCCCC-CCCEEEEEECCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 9-----848999546899997279982448998879999-97317998017999983599999138829997
Q 005546 185 D-----SVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAA-SICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (691)
Q Consensus 185 D-----n~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s-~~~avsF~FG~~~~W~~lTLyiL~~~GDIYal 250 (691)
| +.+++||+.......... .............. ...+.+++|.+. .-.|++...+|.|+..
T Consensus 136 ~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 136 NVMKNPGSINIYEIERDSATHELT-KVSEEPIHKIITHEGLDAATVAGWSTK----GKYIIAGHKDGKISKY 202 (369)
T ss_dssp CBTTBCCEEEEEEEEECTTTCCEE-EECSSCSEEEECCTTCCCEEEEEECGG----GCEEEEEETTSEEEEE
T ss_pred CCCCCCCEEEEEEECCCCCCEEEC-CCCCCEEEECCCCCCCCCEEEEEECCC----CCEEEEECCCCEEEEE
T ss_conf 866788779999954886414420-221102363157767643059998189----9889997699879999
No 8
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=1.00 E-value=1 Score=32.05 Aligned_cols=111 Identities=9% Similarity=0.000 Sum_probs=56.7
Q ss_pred CEEEEEEEECC-CCCEEEEEEC-CEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEE
Q ss_conf 31254899699-9998999926-839999958998888997127779995453454037841148999961899779999
Q 005546 105 NFEVSRISINR-NGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (691)
Q Consensus 105 ~feI~qi~iSp-sG~~LAl~G~-~~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVL 182 (691)
...|..|.++| +|++|+-.+. ..|.|-.+- +. .++.+.-. ......+..+.|+|.+ ..|++-
T Consensus 164 ~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~-------~~--~~~~~~~~------~~~~~~~~~~~~~~~~-~~l~~g 227 (435)
T 4e54_B 164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-------GN--ILRVFASS------DTINIWFCSLDVSASS-RMVVTG 227 (435)
T ss_dssp SCCCCEEEECSSCTTEEEEECSSSCEEEEETT-------SC--EEEEEECC------SSCSCCCCCEEEETTT-TEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCCEEEEEECC-------CC--CEEEEECC------CCCCCCEEEEEECCCC-CEEEEE
T ss_conf 99888999907999999999589979996456-------77--22588616------7777537999989999-999999
Q ss_pred ECCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEE
Q ss_conf 249848999546899997279982448998879999973179980179999835999991388299
Q 005546 183 SSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIY 248 (691)
Q Consensus 183 TsDn~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIY 248 (691)
..|+.|++||+... . ...+. .....+.+++|.|. +...+.....||.|.
T Consensus 228 ~~dg~i~~wd~~~~---~--~~~~~---------~h~~~v~~v~~~p~---~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 228 DNVGNVILLNMDGK---E--LWNLR---------MHKKKVTHVALNPC---CDWFLATASVDQTVK 276 (435)
T ss_dssp CSSSBEEEEESSSC---B--CCCSB---------CCSSCEEEEEECTT---CSSEEEEEETTSBCC
T ss_pred ECCCCEEEECCCCC---E--EEEEE---------CCCCEEEEEEECCC---CCEEEEEECCCCEEE
T ss_conf 58996766326750---5--68984---------13433775333377---744999833764025
No 9
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=1.00 E-value=1 Score=31.45 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=65.5
Q ss_pred EEEEEECCCCCEEEEEECC-EEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 5489969999989999268-399999589988889971277799954534540378411489999618997799992498
Q 005546 108 VSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDS 186 (691)
Q Consensus 108 I~qi~iSpsG~~LAl~G~~-~V~Vv~LP~~~~~~d~~~i~crt~~v~~~~~~~s~~~~~I~qv~WHP~sds~LvVLTsDn 186 (691)
+.-...+++|++||..+.. .|.|..+. ... +... .......|..+.|+|.+ ..|++-..|+
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~--~~~~--------~~~h~~~v~~~~~~~~~-~~l~s~s~d~ 161 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDSN-------FNL--QREI--------DQAHVSEITKLKFFPSG-EALISSSQDM 161 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECTT-------SCE--EEEE--------TTSSSSCEEEEEECTTS-SEEEEEETTS
T ss_pred EEEEEEECCCCEEEEEECCCCEEEEECC-------CCC--EEEE--------CCCCCCCCEEEEECCCC-CEEEEEECCC
T ss_conf 5999981689889999789979999577-------751--4565--------14655740899997999-9899983898
Q ss_pred EEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEC
Q ss_conf 48999546899997279982448998879999973179980179999835999991388299975
Q 005546 187 VFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC 251 (691)
Q Consensus 187 ~iRlydl~~~~~~p~q~~~L~~~~~g~s~~~s~~~avsF~FG~~~~W~~lTLyiL~~~GDIYalc 251 (691)
.|++||+.. .. ..+.+.-+ ...+.+++|.+. .-.|+....||.|...-
T Consensus 162 ~i~iwd~~~-~~-~~~~~~~h-----------~~~v~~~~~~~~----~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 162 QLKIWSVKD-GS-NPRTLIGH-----------RATVTDIAIIDR----GRNVLSASLDGTIRLWE 209 (420)
T ss_dssp EEEEEETTT-CC-CCEEEECC-----------SSCEEEEEEETT----TTEEEEEETTSCEEEEE
T ss_pred EEEEEECCC-CC-CCEEECCC-----------CCCEEEEEECCC----CCEEEEECCCCCEEEEE
T ss_conf 199986899-86-75077478-----------876899999689----99799973899489868
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=31.33 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=26.4
Q ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 11489999618997799992498489995468
Q 005546 164 IRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (691)
Q Consensus 164 ~~I~qv~WHP~sds~LvVLTsDn~iRlydl~~ 195 (691)
..|..+.|+|. +..|+.-..|+.||+||+..
T Consensus 212 ~~V~~v~fspd-g~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 212 PKVIQSLYHPN-SLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp CCEEEEEECTT-SSEEEEEETTCCEEEEETTT
T ss_pred CCEEEEEECCC-CCEEEEEECCCEEEEEECCC
T ss_conf 77689998599-99999998999399998789
Done!