BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005548
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 138/265 (52%), Positives = 192/265 (72%), Gaps = 2/265 (0%)
Query: 398 DDKTALSAKFRERIEQYKDKCPRHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTALP 457
+ KT E+IE+ P HV + +EL + + + +SS+E +V RNY+DWL ALP
Sbjct: 4 EGKTGEVQTLTEKIEEAG--MPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALP 61
Query: 458 WGNYSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGK 517
W + +D+ D+ A ++LDE+H+GL VKERILE++AV KL +G I+CL+GPPGVGK
Sbjct: 62 WTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGK 121
Query: 518 TSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLI 577
TS+ +SIA++L RKF R S+GG+ D +EI+GHRRTY+GAMPG+++Q +K G NP+ L+
Sbjct: 122 TSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLL 181
Query: 578 DEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPL 637
DEIDK+ GDP+SA+LE+LDPEQN++F DHY++ DLSKVLF+ TAN + IP PL
Sbjct: 182 DEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPL 241
Query: 638 LDRMEVIAIAGYITDEKMHIARDYL 662
DRME+I IAGY EK+ I +D+L
Sbjct: 242 RDRMEIINIAGYTEIEKLEIVKDHL 266
>pdb|3LJC|A Chain A, Crystal Structure Of Lon N-Terminal Domain
Length = 252
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 118/268 (44%), Gaps = 40/268 (14%)
Query: 140 NPRLEDYLSVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLLKDDSL 199
NP + + + LPL ++P +P++V K + L+
Sbjct: 9 NPERSERIEIPVLPLRDVVVYPHXVIPLFVGREKSIRCLE-------------------- 48
Query: 200 TDASTDTEKSVSDLKGKEL------FNRLHEVGTLAQISSI----QGDQVILI-GHRRLR 248
A+ D +K + + KE N L VGT+A I G +L+ G +R R
Sbjct: 49 --AAXDHDKKIXLVAQKEASTDEPGVNDLFTVGTVASILQXLKLPDGTVKVLVEGLQRAR 106
Query: 249 ITEMVSE-DPLTVKVDHLKDKPYD-KDDDVIKATSFEVISTLRDVLKTSSLWRDHVQTYT 306
I+ + + + K ++L+ D ++ +V+ T+ IS +K + V T
Sbjct: 107 ISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTA---ISQFEGYIKLNKKIPPEVLTSL 163
Query: 307 QHIGDFSFPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELVKKEMEISKIQESIA 366
I D + RLAD AA Q VLE DV +RL+ + E+++ ++++ I
Sbjct: 164 NSIDDPA--RLADTIAAHXPLKLADKQSVLEXSDVNERLEYLXAXXESEIDLLQVEKRIR 221
Query: 367 KAIEEKISGEQRRYLLNEQLKAIKKELG 394
++++ QR Y LNEQ KAI+KELG
Sbjct: 222 NRVKKQXEKSQREYYLNEQXKAIQKELG 249
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 19/110 (17%)
Query: 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPG 559
GI+Q K + L GPPG GKT + R++A + KF R S L + YIG
Sbjct: 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV---------QKYIGE-GS 227
Query: 560 KMVQCLKNVGT--ANPLVLIDEIDKLG----RGHAGDPASA---LLELLD 600
+MV+ L + A ++ +DEID +G G G + +LELL+
Sbjct: 228 RMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN 277
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPG 559
G K I L GPPG GKT + R++A N FF S +D E+ ++G
Sbjct: 45 GARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISG---SDFVEL------FVGVGAA 95
Query: 560 KMVQCLKNVGTANP-LVLIDEIDKLGRGHAG 589
++ P +V IDEID +GR H G
Sbjct: 96 RVRDLFAQAKAHAPCIVFIDEIDAVGR-HRG 125
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 498 LRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAM 557
LRG +G I L GPPG GKT IG+ IA FF S L +G
Sbjct: 113 LRGPPKG--ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGE-------- 162
Query: 558 PGKMVQCLKNVGTAN--PLVLIDEIDKL 583
KMV+ L V ++ IDEID L
Sbjct: 163 --KMVRALFAVARCQQPAVIFIDEIDSL 188
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 69/185 (37%), Gaps = 28/185 (15%)
Query: 418 CPRHVLQVIEEELTKLQLLEAS-----SSEFNVTRNYLDWLTALPWGNYSDENFDVIRAQ 472
C LQ I +++ + L + + + VT + W AL N S V+
Sbjct: 415 CSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRW--ALSQSNPSALRETVVEVP 472
Query: 473 KILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIA 525
++ ED GL DVK + E + G++ K + GPPG GKT + ++IA
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 526 RALNRKFFRFSVGGLADVAEIKGHR--RTYIGAMPGKMVQCLKNVGTANPLVL-IDEIDK 582
F IKG + G + + A P VL DE+D
Sbjct: 533 NECQANFI-----------SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 583 LGRGH 587
+ +
Sbjct: 582 IAKAR 586
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 482 LNDVKERI---LEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF 533
L +KE + L A+ K G+ + I L GPPG GKT I R++A FF
Sbjct: 213 LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 69/185 (37%), Gaps = 28/185 (15%)
Query: 418 CPRHVLQVIEEELTKLQLLEAS-----SSEFNVTRNYLDWLTALPWGNYSDENFDVIRAQ 472
C LQ I +++ + L + + + VT + W AL N S V+
Sbjct: 415 CSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRW--ALSQSNPSALRETVVEVP 472
Query: 473 KILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIA 525
++ ED GL DVK + E + G++ K + GPPG GKT + ++IA
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 526 RALNRKFFRFSVGGLADVAEIKGHR--RTYIGAMPGKMVQCLKNVGTANPLVL-IDEIDK 582
F IKG + G + + A P VL DE+D
Sbjct: 533 NECQANFI-----------SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 583 LGRGH 587
+ +
Sbjct: 582 IAKAR 586
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 482 LNDVKERI---LEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF 533
L +KE + L A+ K G+ + I L GPPG GKT I R++A FF
Sbjct: 213 LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPG 559
G K I L GPPG G T + R++A N FF S +D E+ ++G
Sbjct: 45 GARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISG---SDFVEL------FVGVGAA 95
Query: 560 KMVQCLKNVGTANP-LVLIDEIDKLGRGHAG 589
++ P +V IDEID +GR H G
Sbjct: 96 RVRDLFAQAKAHAPCIVFIDEIDAVGR-HRG 125
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPG 559
GI K + L G PG GKT + +++A + F R L + Y+G P
Sbjct: 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI---------QKYLGDGPR 262
Query: 560 KMVQCLKNVGTANP-LVLIDEIDKLG 584
Q K G P +V IDEID +G
Sbjct: 263 LCRQIFKVAGENAPSIVFIDEIDAIG 288
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQC 564
K I + GP GVGKT I R +A+ N F + +V Y+G +++
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG--------YVGKEVDSIIRD 102
Query: 565 LKN-VGTA------NPLVLIDEIDKL 583
L + G A N +V IDEIDK+
Sbjct: 103 LTDSAGGAIDAVEQNGIVFIDEIDKI 128
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
Query: 478 DHYGLNDVKERILEFIAVGKLRGISQ-----GKI---ICLSGPPGVGKTSIGRSIARALN 529
D G ++ KE + E + LR S+ GKI + + GPPG GKT + ++IA
Sbjct: 13 DVAGCDEAKEEVAELVEY--LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70
Query: 530 RKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGR 585
FF S +D E+ ++G ++ + A P ++ IDEID +GR
Sbjct: 71 VPFFTISG---SDFVEM------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 118
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQC 564
K + L GPPGVGKT + R++A F S +D E+ ++G ++
Sbjct: 65 KGVLLVGPPGVGKTHLARAVAGEARVPFITASG---SDFVEM------FVGVGAARVRDL 115
Query: 565 LKNVGTANP-LVLIDEIDKLGR 585
+ P +V IDEID +GR
Sbjct: 116 FETAKRHAPCIVFIDEIDAVGR 137
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQC 564
K + L GPPGVGKT + R++A F S +D E+ ++G ++
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASG---SDFVEM------FVGVGAARVRDL 124
Query: 565 LKNVGTANP-LVLIDEIDKLGR 585
+ P +V IDEID +GR
Sbjct: 125 FETAKRHAPCIVFIDEIDAVGR 146
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 500 GISQGKI-ICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMP 558
G+ GK I L GP G GKT + ++AR L+ F L + + I +
Sbjct: 46 GVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL- 104
Query: 559 GKMVQCLKNVGTAN-PLVLIDEIDKLGRGHAGDPA-----------SALLELLD------ 600
+ +C +V A +V ID+IDK+ R + +P+ ALL+L++
Sbjct: 105 --LQKCDYDVQKAQRGIVYIDQIDKISR-KSDNPSITRDVSGEGVQQALLKLIEGTVAAV 161
Query: 601 PEQNANFLDHYLDVPIDLSKVLFVC 625
P Q + +D SK+LF+C
Sbjct: 162 PPQGGRKHPQQEFLQVDTSKILFIC 186
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 23/145 (15%)
Query: 500 GISQGKI-ICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMP 558
G+ GK I L GP G GKT + ++AR L+ F L + + I +
Sbjct: 46 GVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL- 104
Query: 559 GKMVQCLKNVGTAN-PLVLIDEIDKLGRGHAGDPA-----------SALLELLD------ 600
+ +C +V A +V ID+IDK+ R + +P+ ALL+L++
Sbjct: 105 --LQKCDYDVQKAQRGIVYIDQIDKISR-KSDNPSITRDVSGEGVQQALLKLIEGTVAAV 161
Query: 601 PEQNANFLDHYLDVPIDLSKVLFVC 625
P Q + +D SK+LF+C
Sbjct: 162 PPQGGRKHPQQEFLQVDTSKILFIC 186
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPG 559
GI K + L GPPG GKT + +++A + F G+ D YIG
Sbjct: 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD---------KYIGESAR 261
Query: 560 KMVQCLKNVGTANP-LVLIDEIDKLGRGHAGDPASA-------LLELL 599
+ + P ++ +DE+D +G + SA L+ELL
Sbjct: 262 IIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELL 309
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 21/130 (16%)
Query: 468 VIRAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSI 520
V+ ++ ED GL DVK + E + G++ K + GPPG GKT +
Sbjct: 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65
Query: 521 GRSIARALNRKFFRFSVGGLADVAEIKGHR--RTYIGAMPGKMVQCLKNVGTANPLVL-I 577
++IA F IKG + G + + A P VL
Sbjct: 66 AKAIANECQANFI-----------SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 114
Query: 578 DEIDKLGRGH 587
DE+D + +
Sbjct: 115 DELDSIAKAR 124
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 16/119 (13%)
Query: 477 EDHYGLNDVKERILEFIAVGKL------RGISQGKIICLSGPPGVGKTSIGRSIARALNR 530
+D G + KE ++E + K G K + L GPPG GKT + +++A +
Sbjct: 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70
Query: 531 KFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHA 588
F FS+GG + + ++G ++ + P ++ IDEID +G+ A
Sbjct: 71 PF--FSMGGSSFI-------EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRA 120
>pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
T125a Mutant From Aquifex Aeolicus
Length = 255
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 611 YLDVP-----IDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKT 665
+L+ P I K +CTA+V+EN+PN L + + G+IT E + R ++T
Sbjct: 20 FLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQ-----GWITAEYSMLPRATQQRT 74
Query: 666 TREA 669
RE+
Sbjct: 75 IRES 78
>pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
R86a Mutant From Aquifex Aeolicus
Length = 255
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 611 YLDVP-----IDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKT 665
+L+ P I K +CTA+V+EN+PN L + + G+IT E + R ++T
Sbjct: 20 FLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQ-----GWITAEYSMLPRATQQRT 74
Query: 666 TREA 669
RE+
Sbjct: 75 IRES 78
>pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
R126a Mutant From Aquifex Aeolicus
Length = 255
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 611 YLDVP-----IDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKT 665
+L+ P I K +CTA+V+EN+PN L + + G+IT E + R ++T
Sbjct: 20 FLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQ-----GWITAEYSMLPRATQQRT 74
Query: 666 TREA 669
RE+
Sbjct: 75 IRES 78
>pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
From Aquifex Aeolicus
Length = 255
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 611 YLDVP-----IDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKT 665
+L+ P I K +CTA+V+EN+PN L + + G+IT E + R ++T
Sbjct: 20 FLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQ-----GWITAEYSMLPRATQQRT 74
Query: 666 TREA 669
RE+
Sbjct: 75 IRES 78
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQC 564
K + L GPPGVGKT + R++A F S +D E+ ++G ++
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASG---SDFVEM------FVGVGAARVRDL 124
Query: 565 LKNVGTANP-LVLIDEIDKLGR 585
+ P +V IDEID +GR
Sbjct: 125 FETAKRHAPCIVFIDEIDAVGR 146
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPG 559
GI + + L GPPG GKT + +++A + F R V G V H+ Y+G P
Sbjct: 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR--VNGSEFV-----HK--YLGEGP- 251
Query: 560 KMVQCLKNVGTANP--LVLIDEIDKLG 584
+MV+ + + N ++ IDE+D +
Sbjct: 252 RMVRDVFRLARENAPSIIFIDEVDSIA 278
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQC 564
K + L GPPGVGKT + R++A F S +D E+ ++G ++
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITASG---SDFVEM------FVGVGAARVRDL 100
Query: 565 LKNVGTANP-LVLIDEIDKLGR 585
+ P +V IDEID +GR
Sbjct: 101 FETAKRHAPCIVFIDEIDAVGR 122
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 477 EDHYGLNDVKERILEFIAVG-KLRGISQGKI-----ICLSGPPGVGKTSIGRSIARALNR 530
ED GL KE + E + + K + +G I L GPPG GK+ + +++A N
Sbjct: 27 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 86
Query: 531 KFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTAN--PLVLIDEIDKL--GRG 586
FF S L V++ G K+V+ L + N ++ IDE+D L RG
Sbjct: 87 TFFSVSSSDL--VSKWMGESE--------KLVKQLFAMARENKPSIIFIDEVDALTGTRG 136
Query: 587 HAGDPAS 593
AS
Sbjct: 137 EGESEAS 143
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 507 ICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLK 566
I L GPPG GK+ + +++A N F FS+ V++ G K+V+ L
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTF-FSISSSDLVSKWLGESE--------KLVKNLF 220
Query: 567 NVGTAN--PLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFV 624
+ N ++ IDEID L + + + A + FL V +D +L +
Sbjct: 221 QLARENKPSIIFIDEIDSLCGSRSENESEAARRI-----KTEFLVQMQGVGVDNDGILVL 275
Query: 625 CTANV 629
N+
Sbjct: 276 GATNI 280
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPG 559
GI K I L GPPG GKT + +++A N F R L + +IG
Sbjct: 47 GIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV---------KKFIGEGAS 97
Query: 560 KMVQCLKNVGTANP-LVLIDEIDKLG 584
+ K P ++ IDEID +
Sbjct: 98 LVKDIFKLAKEKAPSIIFIDEIDAIA 123
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 19/116 (16%)
Query: 478 DHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNR 530
D GL+ E ++E I + R GI K + GPPG GKT + R+ A N
Sbjct: 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241
Query: 531 KFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVG--TANPLVLIDEIDKLG 584
F + + L + YIG K+V+ + A ++ IDE+D +G
Sbjct: 242 TFLKLAAPQLV---------QMYIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIG 287
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQC 564
K I + GP GVGKT I R +A+ N F + +V Y+G +++
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG--------YVGKEVDSIIRD 102
Query: 565 LKNVGTANPLVLIDEIDKLGRGHAGDPASA--LLELLDPEQN 604
L + +A LV EI K R A D A L LL P +N
Sbjct: 103 LTD--SAMKLVRQQEIAK-NRARAEDVAEERILDALLPPAKN 141
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 501 ISQGKIICLSGPPGVGKTSIGRSIARALNRKFF 533
+++ + I L GP G GK++IGR +A+ LN +F+
Sbjct: 1 MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 477 EDHYGLNDVKERILEFIAVG-KLRGISQGKI-----ICLSGPPGVGKTSIGRSIARALNR 530
ED GL KE + E + + K + +G I L GPPG GK+ + +++A N
Sbjct: 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 77
Query: 531 KFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTAN--PLVLIDEIDKL--GRG 586
FF S L V++ G K+V+ L + N ++ ID++D L RG
Sbjct: 78 TFFSVSSSDL--VSKWMGESE--------KLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 587 HAGDPAS 593
AS
Sbjct: 128 EGESEAS 134
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 25/124 (20%)
Query: 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPG 559
GI K I L GPPG GKT R++A + F R L + Y+G
Sbjct: 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV---------QKYVGEG-A 288
Query: 560 KMVQCLKNVGTANP--LVLIDEIDKLGRGHAGDPASA-------LLELL------DPEQN 604
+MV+ L + ++ DEID +G D A +LEL+ DP N
Sbjct: 289 RMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348
Query: 605 ANFL 608
+
Sbjct: 349 IKVM 352
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 498 LRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAM 557
LR ++G + L GPPG GKT + +++A N FF S L Y+G
Sbjct: 144 LRAPARG--LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS---------KYVGEG 192
Query: 558 PGKMVQCLKNVGT--ANPLVLIDEIDKL 583
K+V+ L V ++ ID++D L
Sbjct: 193 E-KLVRALFAVARELQPSIIFIDQVDSL 219
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 22/170 (12%)
Query: 468 VIRAQKILDEDHYGLNDVKERILEFIAVG-KLRGISQGKI-----ICLSGPPGVGKTSIG 521
VI + D GL KE + E + + K + GK I L GPPG GK+ +
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62
Query: 522 RSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTAN--PLVLIDE 579
+++A N F FS+ V++ G K+V+ L + N ++ IDE
Sbjct: 63 KAVATEANNSTF-FSISSSDLVSKWLGESE--------KLVKNLFQLARENKPSIIFIDE 113
Query: 580 IDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV 629
ID L + + + A + FL V +D +L + N+
Sbjct: 114 IDSLCGSRSENESEAARRI-----KTEFLVQMQGVGVDNDGILVLGATNI 158
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 507 ICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLK 566
I L GPPG GK+ + +++A N FF S L V++ G K+V+ L
Sbjct: 87 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--VSKWMGESE--------KLVKQLF 136
Query: 567 NVGTAN--PLVLIDEIDKL--GRGHAGDPAS 593
+ N ++ ID++D L RG AS
Sbjct: 137 AMARENKPSIIFIDQVDALTGTRGEGESEAS 167
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 507 ICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLK 566
I L GPPG GK+ + +++A N FF S L V++ G K+V+ L
Sbjct: 72 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--VSKWMGESE--------KLVKQLF 121
Query: 567 NVGTAN--PLVLIDEIDKL--GRGHAGDPAS 593
+ N ++ ID++D L RG AS
Sbjct: 122 AMARENKPSIIFIDQVDALTGTRGEGESEAS 152
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQC 564
K I GP GVGKT I R +A+ N F + +V Y+G +++
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG--------YVGKEVDSIIRD 102
Query: 565 LKNVGTANPLVLIDEIDKLGRGHAGDPASA--LLELLDPEQN 604
L + +A LV EI K R A D A L LL P +N
Sbjct: 103 LTD--SAXKLVRQQEIAK-NRARAEDVAEERILDALLPPAKN 141
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 508 CLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD---VAEIKGHRRTYIGAMPGKMVQC 564
+GP GVGKT + +++AL + RF + + V+ + G Y+G G +
Sbjct: 492 LFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGL--- 548
Query: 565 LKNVGTANP--LVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVL 622
L + +P ++L+DEI+K H D + LL+++D N D+ D V+
Sbjct: 549 LTDAVIKHPHAVLLLDEIEK---AHP-DVFNILLQVMD---NGTLTDNN-GRKADFRNVV 600
Query: 623 FVCTAN 628
V T N
Sbjct: 601 LVMTTN 606
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 489 ILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF-FRFSVGGLADVAEIK 547
I+E I K+ G+ + L+GPPG GKT++ +IA+ L K F VG EIK
Sbjct: 52 IVELIKSKKM----AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIK 107
>pdb|3R20|A Chain A, Crystal Structure Of Cytidylate Kinase From Mycobacterium
Smegmatis
Length = 233
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 501 ISQGKIICLSGPPGVGKTSIGRSIARALNRKFF 533
+S ++ + GP G GK+S+ R +ARAL ++
Sbjct: 6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYL 38
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 38/197 (19%)
Query: 502 SQGKI--ICLSGP-PGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMP 558
S+GKI I L P PG GKT++ +++ +N F G + ++G + A
Sbjct: 43 SKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMM-FVNGSDCKIDFVRGPLTNFASA-- 99
Query: 559 GKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDL 618
+ +++IDE D+ G + + +E
Sbjct: 100 -------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS------------------ 134
Query: 619 SKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREAC---GIK-P 674
S + TAN ++ I PL R VI ++K+ + + + + T E C GI
Sbjct: 135 SNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLT-EICKHEGIAIA 193
Query: 675 EQKITAG--KQGFGIFR 689
+ K+ A K+ F FR
Sbjct: 194 DMKVVAALVKKNFPDFR 210
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 17/79 (21%)
Query: 456 LPW-GNYSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPG 514
LPW Y E D + YG N+V + +F+ GKL + GPPG
Sbjct: 13 LPWVEKYRPETLDEV----------YGQNEVITTVRKFVDEGKLPHL------LFYGPPG 56
Query: 515 VGKTSIGRSIARALNRKFF 533
GKTS ++AR + K +
Sbjct: 57 TGKTSTIVALAREIYGKNY 75
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 504 GKIICLSGPPGVGKTSIGRSIARALNRKF-FRFSVGGLADVAEIK 547
G+ + L+GPPG GKT++ +IA+ L K F VG EIK
Sbjct: 77 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIK 121
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 84/224 (37%), Gaps = 34/224 (15%)
Query: 473 KILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF 532
K LDE + G +K+++ ++ K R + + L GPPG+GKT++ IA L
Sbjct: 9 KTLDE-YIGQERLKQKLRVYLEAAKARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVN- 65
Query: 533 FRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPA 592
R + G + PG + L N ++ IDEI +L R
Sbjct: 66 LRVTSGPAIE--------------KPGDLAAILANSLEEGDILFIDEIHRLSRQAE---- 107
Query: 593 SALLELLDPEQNANFLDHYLD-------VPIDLSKVLFVCTANVVENIPNPLLDRMEVIA 645
E L P +D + + ++L + + I PLL R ++
Sbjct: 108 ----EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVE 163
Query: 646 IAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689
Y T E++ A+ + I E + G++ G R
Sbjct: 164 HLEYYTPEEL--AQGVMRDARLLGVRITEEAALEIGRRSRGTMR 205
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 84/224 (37%), Gaps = 34/224 (15%)
Query: 473 KILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF 532
K LDE + G +K+++ ++ K R + + L GPPG+GKT++ IA L
Sbjct: 9 KTLDE-YIGQERLKQKLRVYLEAAKARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVN- 65
Query: 533 FRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPA 592
R + G + PG + L N ++ IDEI +L R
Sbjct: 66 LRVTSGPAIE--------------KPGDLAAILANSLEEGDILFIDEIHRLSRQAE---- 107
Query: 593 SALLELLDPEQNANFLDHYLD-------VPIDLSKVLFVCTANVVENIPNPLLDRMEVIA 645
E L P +D + + ++L + + I PLL R ++
Sbjct: 108 ----EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVE 163
Query: 646 IAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689
Y T E++ A+ + I E + G++ G R
Sbjct: 164 HLEYYTPEEL--AQGVMRDARLLGVRITEEAALEIGRRSRGTMR 205
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 482 LNDVKERI---LEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF 533
L +KE + L A+ K G+ + I L GPPG GKT I R++A FF
Sbjct: 213 LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 482 LNDVKERI---LEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF 533
L +KE + L A+ K G+ + I L GPPG GKT I R++A FF
Sbjct: 213 LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 482 LNDVKERI---LEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF 533
L +KE + L A+ K G+ + I L GPPG GKT I R++A FF
Sbjct: 213 LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 482 LNDVKERI---LEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF 533
L +KE + L A+ K G+ + I L GPPG GKT I R++A FF
Sbjct: 213 LAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 86/230 (37%), Gaps = 34/230 (14%)
Query: 467 DVIRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIAR 526
D+ K LDE + G +K+++ ++ K R + + L GPPG+GKT++ IA
Sbjct: 3 DLALRPKTLDE-YIGQERLKQKLRVYLEAAKARK-EPLEHLLLFGPPGLGKTTLAHVIAH 60
Query: 527 ALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRG 586
L R + G + PG + L N ++ IDEI +L R
Sbjct: 61 ELGVN-LRVTSGPAIE--------------KPGDLAAILANSLEEGDILFIDEIHRLSRQ 105
Query: 587 HAGDPASALLELLDPEQNANFLDHYLD-------VPIDLSKVLFVCTANVVENIPNPLLD 639
E L P +D + + ++L + + I PLL
Sbjct: 106 AE--------EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS 157
Query: 640 RMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689
R ++ Y T E++ A+ + I E + G++ G R
Sbjct: 158 RFGIVEHLEYYTPEEL--AQGVMRDARLLGVRITEEAALEIGRRSRGTMR 205
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 32/170 (18%)
Query: 479 HYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVG 538
+ G +K+ + FIA K R I+ SGP G+GKT++ I+ +
Sbjct: 31 YIGQESIKKNLNVFIAAAKKRNECLDHIL-FSGPAGLGKTTLANIISYEXS--------- 80
Query: 539 GLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLEL 598
A IK I G + L N+ + ++ IDEI +L + A+ E+
Sbjct: 81 -----ANIKTTAAPXI-EKSGDLAAILTNLSEGD-ILFIDEIHRL--------SPAIEEV 125
Query: 599 LDPEQNANFLDHYL-------DVPIDLSKVLFVCTANVVENIPNPLLDRM 641
L P LD + + IDL K + + NPL DR
Sbjct: 126 LYPAXEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGXLSNPLRDRF 175
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQC 564
K I + GP GVGKT I R +A+ N F + +V Y+G +++
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG--------YVGKEVDSIIRD 102
Query: 565 LKNVGTANPLVLIDEIDKLGRGHAGDPASA-LLELLDPEQNANF 607
L + A +V + I+K R A + A +L++L P N+
Sbjct: 103 LTD--AAVKMVRVQAIEK-NRYRAEELAEERILDVLIPPAKNNW 143
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQC 564
K I + GP GVGKT I R +A+ N F + +V Y+G +++
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG--------YVGKEVDSIIRD 101
Query: 565 LKNVGTANPLVLIDEIDKLGRGHAGDPASA-LLELLDPEQNANF 607
L + A +V + I+K R A + A +L++L P N+
Sbjct: 102 LTD--AAVKMVRVQAIEK-NRYRAEELAEERILDVLIPPAKNNW 142
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQC 564
K I + GP GVGKT I R +A+ N F + +V Y+G +++
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG--------YVGKEVDSIIRD 108
Query: 565 LKNVGTANPLVLIDEIDKLGRGHAGDPASA-LLELLDPEQNANF 607
L + A +V + I+K R A + A +L++L P N+
Sbjct: 109 LTD--AAVKMVRVQAIEK-NRYRAEELAEERILDVLIPPAKNNW 149
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 507 ICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA 541
I L+G PGVGKT++G+ +A K+ +VG LA
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKY--INVGDLA 39
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 489 ILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN 529
+LE I GK+ G+ + ++G PG GKT+I +A+AL
Sbjct: 59 VLEMIREGKI----AGRAVLIAGQPGTGKTAIAMGMAQALG 95
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 492 FIAVGKL--RGISQGKI--ICLSGPPGVGKTSIGRSIARALNRKFFRFSV 537
+A GK R I G + + L GPPG GKT++ IAR N R S
Sbjct: 34 LLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISA 83
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 498 LRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAM 557
LR ++G + L GPPG GKT + R++A + F S L Y+G
Sbjct: 50 LRAPAKG--LLLFGPPGNGKTLLARAVATECSATFLNISAASLTS---------KYVGDG 98
Query: 558 PGKMVQCLKNVG--TANPLVLIDEID 581
K+V+ L V ++ IDE+D
Sbjct: 99 E-KLVRALFAVARHMQPSIIFIDEVD 123
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 494 AVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSV 537
A+ + I +G ++ L+G PG GKT+I +A L ++ +R V
Sbjct: 3 ALTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 507 ICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA 541
I L+G PGVGKT++G+ +A K+ +VG LA
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKY--INVGDLA 46
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 473 KILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN 529
K LDE G +VK+++ + K+RG ++ L+GPPG+GKT++ IA L
Sbjct: 22 KSLDE-FIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGKTTLAHIIASELQ 76
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 473 KILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN 529
K LDE G +VK+++ + K+RG ++ L+GPPG+GKT++ IA L
Sbjct: 22 KSLDE-FIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGKTTLAHIIASELQ 76
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 473 KILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN 529
K LDE G +VK+++ + K+RG ++ L+GPPG+GKT++ IA L
Sbjct: 22 KSLDE-FIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGKTTLAHIIASELQ 76
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 473 KILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN 529
K LDE G +VK+++ + K+RG ++ L+GPPG+GKT++ IA L
Sbjct: 22 KSLDE-FIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGKTTLAHIIASELQ 76
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 477 EDHYGLNDVKERILEFIAVGK------LRGISQGKIICLSGPPGVGKTSIGRSIARALNR 530
+D G+++ K + EF+ K G K L GPPG GKT + +++A
Sbjct: 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV 65
Query: 531 KFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP--LVLIDEIDKLGR 585
F + +V IG + V+ L A +V IDEID +G+
Sbjct: 66 PFLAMAGAEFVEV----------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGK 112
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 473 KILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN 529
K LDE G +VK+++ + K+RG ++ L+GPPG+GKT++ IA L
Sbjct: 22 KSLDE-FIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGKTTLAHIIASELQ 76
>pdb|3NBX|X Chain X, Crystal Structure Of E. Coli Rava (Regulatory Atpase
Variant A) In Complex With Adp
Length = 500
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 504 GKIICLSGPPGVGKTSIGRSI------ARALNRKFFRFS----VGGLADVAEIKG---HR 550
G+ + L GPPG+ K+ I R + ARA RFS V G + +K +
Sbjct: 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYE 100
Query: 551 RTYIGAMPGKMVQCLKNVGTANPLVL 576
R G +P + L + A P +L
Sbjct: 101 RLTSGYLPEAEIVFLDEIWKAGPAIL 126
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 465 NFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRS 523
N +VI+ ++ L ++ +R F AV KL I G+ + L GP G GKT+ R
Sbjct: 4 NIEVIKMVEV------KLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRM 57
Query: 524 IA 525
IA
Sbjct: 58 IA 59
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 465 NFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRS 523
N +VI+ ++ L ++ +R F AV KL I G+ + L GP G GKT+ R
Sbjct: 3 NIEVIKMVEV------KLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRM 56
Query: 524 IA 525
IA
Sbjct: 57 IA 58
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 491 EFIAVGKLRGISQGKI---ICLSGPPGVGKTSIGRSIARALN 529
E + G+S G+I SG GVGKTSI R +A+ LN
Sbjct: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 491 EFIAVGKLRGISQGKI---ICLSGPPGVGKTSIGRSIARALN 529
E + G+S G+I SG GVGKTSI R +A+ LN
Sbjct: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 491 EFIAVGKLRGISQGKI---ICLSGPPGVGKTSIGRSIARALN 529
E + G+S G+I SG GVGKTSI R +A+ LN
Sbjct: 25 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 66
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 491 EFIAVGKLRGISQGKI---ICLSGPPGVGKTSIGRSIARALN 529
E + G+S G+I SG GVGKTSI R +A+ LN
Sbjct: 44 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 85
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 491 EFIAVGKLRGISQGKI---ICLSGPPGVGKTSIGRSIARALN 529
E + G+S G+I SG GVGKTSI R +A+ LN
Sbjct: 44 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 85
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 473 KILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN 529
K LDE G +VK+++ + K+RG ++ L+GPPG+G+T++ IA L
Sbjct: 22 KSLDE-FIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGRTTLAHIIASELQ 76
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 491 EFIAVGKLRGISQGKI---ICLSGPPGVGKTSIGRSIARALN 529
E + G+S G+I SG GVGKTSI R +A+ LN
Sbjct: 29 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 489 ILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN 529
+LE I GK+ G+ + ++G PG GKT+I A+AL
Sbjct: 74 VLEXIREGKI----AGRAVLIAGQPGTGKTAIAXGXAQALG 110
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 503 QGKIICLSGPPGVGKTSIGRSIARALNRKFF 533
G+ + L G G GKT++G+ +AR+L FF
Sbjct: 47 NGRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77
>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
pdb|1SHK|B Chain B, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 507 ICLSGPPGVGKTSIGRSIARALNRKF-----FRFSVGGL--ADVAEIK---GHRRTYIGA 556
I + G G GKT++GR +ARAL +F F G+ ADV + G RR A
Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEA 64
Query: 557 MPGKMVQCLKNVGTANPLVLIDEIDKLGRGHA 588
+ + + V T +VL+++ + R H
Sbjct: 65 LQA-VATPNRVVATGGGMVLLEQNRQFMRAHG 95
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 12/48 (25%)
Query: 490 LEFIAVGKL--------RGIS----QGKIICLSGPPGVGKTSIGRSIA 525
+EF+ V K+ RG+S +G+++ L GP G GKT+I R IA
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA 62
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 28/222 (12%)
Query: 475 LDEDHYGLNDVKERILEFIA---VGKLR---GISQGK---IICLSGPPGVGKTSIGRSIA 525
LD + GL VK+RI E A V + R G++ + +G PG GKT++ +A
Sbjct: 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMA 88
Query: 526 RALNRKFFRFSVGGLADVA--EIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKL 583
L+R + G L V ++ G YIG K + LK ++ IDE L
Sbjct: 89 GLLHRLGY-VRKGHLVSVTRDDLVGQ---YIGHTAPKTKEVLKRA--MGGVLFIDEAYYL 142
Query: 584 -----GRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCT----ANVVENIP 634
R + + LL+++ E N + L L D + F + + +I
Sbjct: 143 YRPDNERDYGQEAIEILLQVM--ENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIE 200
Query: 635 NPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQ 676
P E+ IAG++ D++ + E R G++ Q
Sbjct: 201 FPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQ 242
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 507 ICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHR--RTYIGAMPGKMVQC 564
+ L+GPPG GKT + +++A F +KG Y+G + Q
Sbjct: 47 VLLAGPPGCGKTLLAKAVANESGLNFI-----------SVKGPELLNMYVGESERAVRQV 95
Query: 565 LKNVGTANPLVL-IDEIDKL 583
+ + P V+ DE+D L
Sbjct: 96 FQRAKNSAPCVIFFDEVDAL 115
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 28/222 (12%)
Query: 475 LDEDHYGLNDVKERILEFIA---VGKLR---GISQGK---IICLSGPPGVGKTSIGRSIA 525
LD + GL VK+RI E A V + R G++ + +G PG GKT++ +A
Sbjct: 22 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMA 81
Query: 526 RALNRKFFRFSVGGLADVA--EIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKL 583
L+R + G L V ++ G YIG K + LK ++ IDE L
Sbjct: 82 GLLHRLGY-VRKGHLVSVTRDDLVGQ---YIGHTAPKTKEVLKRA--MGGVLFIDEAYYL 135
Query: 584 -----GRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCT----ANVVENIP 634
R + + LL+++ E N + L L D + F + + +I
Sbjct: 136 YRPDNERDYGQEAIEILLQVM--ENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIE 193
Query: 635 NPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQ 676
P E+ IAG++ D++ + E R G++ Q
Sbjct: 194 FPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQ 235
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARAL 528
+D G + +R+ ++ G + + +GPPGVGKT+ ++AR L
Sbjct: 25 DDIVGQEHIVKRLKHYVKTGSMPHL------LFAGPPGVGKTTAALALAREL 70
>pdb|3B07|B Chain B, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|D Chain D, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|F Chain F, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|H Chain H, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
Length = 290
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 220 NRLHEVGTLAQISSIQGDQVILIGHRRLRITEMVSEDPLTVKVDHLKDKPYDKDDDVIKA 279
N++ ++G A+I D I +RL IT+ ++ D +KDK Y+KD V+K
Sbjct: 12 NKIEDIGQGAEIIKRTQD----ITSKRLAITQ-------NIQFDFVKDKKYNKDALVVKM 60
Query: 280 TSF 282
F
Sbjct: 61 QGF 63
>pdb|1BSW|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph
7.5
Length = 197
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 258 LTVKVDHLKDKPYDKDDDVIKATSFEVISTLRD 290
+ + VDH K Y+ D D IKA +E+I+T+ +
Sbjct: 7 IVIVVDHSMVKKYNGDSDSIKAWVYEMINTITE 39
>pdb|1BUD|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph
5.0
Length = 197
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 258 LTVKVDHLKDKPYDKDDDVIKATSFEVISTLRD 290
+ + VDH K Y+ D D IKA +E+I+T+ +
Sbjct: 7 IVIVVDHSMVKKYNGDSDSIKAWVYEMINTITE 39
>pdb|2ZVF|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|C Chain C, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|D Chain D, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|E Chain E, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|F Chain F, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|G Chain G, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|H Chain H, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
Length = 171
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 464 ENFDVIRA-QKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGR 522
E FD + +++D D L + ER+ E AVG L +GK+ ++ G+ R
Sbjct: 68 EEFDSXKVVAEVVDADXQALQKLAERLAEKGAVGCLXAKGEGKVFVVTFS---GQKYDAR 124
Query: 523 SIARALNRKFFRFSVGGLADVAE 545
+ R + R + S GG DVA+
Sbjct: 125 ELLREIGR-VAKGSGGGRKDVAQ 146
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 358 ISKIQESIAKAIEE-KISGEQRRYLLNEQLKAIKKELGLETDDKTALSAKFRERIEQ--Y 414
+ K+ E++ KA+ + K + + L+ E +K I++ L ++ D L K + IE+
Sbjct: 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRAL-IQADVNVKLVLKMSKEIERRAL 59
Query: 415 KDKCPR------HVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTAL 456
++K P+ H+++++ EEL KL EA E N + + L +
Sbjct: 60 EEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGI 107
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 358 ISKIQESIAKAIEE-KISGEQRRYLLNEQLKAIKKELGLETDDKTALSAKFRERIEQ--Y 414
+ K+ E++ KA+ + K + + L+ E +K I++ L ++ D L K + IE+
Sbjct: 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRAL-IQADVNVKLVLKMSKEIERRAL 59
Query: 415 KDKCPR------HVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTAL 456
++K P+ H+++++ EEL KL EA E N + + L +
Sbjct: 60 EEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGI 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,574,522
Number of Sequences: 62578
Number of extensions: 794151
Number of successful extensions: 3019
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 2936
Number of HSP's gapped (non-prelim): 134
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)