Query 005548
Match_columns 691
No_of_seqs 459 out of 3518
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 01:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0466 Lon ATP-dependent Lon 100.0 1.4E-93 3E-98 785.5 55.5 523 148-691 9-537 (782)
2 KOG2004 Mitochondrial ATP-depe 100.0 3.2E-94 7E-99 783.9 49.8 605 50-691 4-625 (906)
3 PRK10787 DNA-binding ATP-depen 100.0 1.5E-80 3.2E-85 725.0 54.8 521 146-690 8-534 (784)
4 TIGR00763 lon ATP-dependent pr 100.0 1.6E-77 3.5E-82 706.4 58.9 521 150-690 1-533 (775)
5 COG2802 Uncharacterized protei 100.0 3E-28 6.5E-33 236.9 21.2 194 143-357 6-209 (221)
6 COG0542 clpA ATP-binding subun 99.9 4.6E-25 1E-29 251.6 25.1 238 441-690 454-732 (786)
7 PF02190 LON: ATP-dependent pr 99.9 9.7E-25 2.1E-29 218.1 19.8 191 148-354 1-205 (205)
8 PRK10865 protein disaggregatio 99.9 9.9E-23 2.1E-27 242.5 30.6 357 313-690 389-806 (857)
9 TIGR03345 VI_ClpV1 type VI sec 99.9 9.3E-20 2E-24 216.5 30.1 242 439-690 527-808 (852)
10 COG1222 RPT1 ATP-dependent 26S 99.9 1.1E-21 2.3E-26 202.8 11.8 181 467-666 141-339 (406)
11 CHL00095 clpC Clp protease ATP 99.8 3.2E-19 6.9E-24 212.8 27.8 239 440-690 471-759 (821)
12 TIGR02639 ClpA ATP-dependent C 99.8 2.4E-19 5.2E-24 211.6 24.3 262 417-690 389-689 (731)
13 PRK11034 clpA ATP-dependent Cl 99.8 6.5E-19 1.4E-23 205.7 22.7 262 417-689 393-692 (758)
14 TIGR01242 26Sp45 26S proteasom 99.8 3.3E-20 7E-25 202.4 10.7 260 381-665 10-309 (364)
15 KOG0730 AAA+-type ATPase [Post 99.8 4.4E-20 9.5E-25 203.6 10.9 174 471-666 428-619 (693)
16 KOG0727 26S proteasome regulat 99.8 5.2E-19 1.1E-23 174.2 17.2 281 350-665 35-342 (408)
17 TIGR03346 chaperone_ClpB ATP-d 99.8 1E-17 2.2E-22 200.5 29.0 238 440-690 527-803 (852)
18 KOG0733 Nuclear AAA ATPase (VC 99.8 1.8E-19 3.8E-24 196.0 11.7 174 468-663 502-693 (802)
19 COG1223 Predicted ATPase (AAA+ 99.8 8.5E-19 1.8E-23 173.6 10.7 176 469-666 113-301 (368)
20 PRK03992 proteasome-activating 99.8 9.7E-19 2.1E-23 191.9 10.9 181 466-665 120-318 (389)
21 KOG0736 Peroxisome assembly fa 99.7 5.1E-18 1.1E-22 189.0 12.7 174 471-664 666-859 (953)
22 KOG0733 Nuclear AAA ATPase (VC 99.7 1.1E-17 2.3E-22 182.3 14.8 172 476-665 189-377 (802)
23 KOG0734 AAA+-type ATPase conta 99.7 1.1E-17 2.3E-22 179.6 12.9 179 466-666 293-488 (752)
24 CHL00195 ycf46 Ycf46; Provisio 99.7 3.7E-17 8.1E-22 182.5 15.2 169 477-665 228-408 (489)
25 KOG0738 AAA+-type ATPase [Post 99.7 1.8E-17 3.9E-22 172.6 10.1 174 473-665 208-398 (491)
26 KOG0728 26S proteasome regulat 99.7 1.2E-16 2.5E-21 157.5 10.3 178 470-666 140-335 (404)
27 PTZ00454 26S protease regulato 99.7 2.6E-16 5.7E-21 172.2 14.1 177 470-665 138-332 (398)
28 TIGR03689 pup_AAA proteasome A 99.7 2.8E-16 6E-21 175.4 13.8 169 476-664 181-380 (512)
29 KOG0739 AAA+-type ATPase [Post 99.7 2E-16 4.3E-21 159.5 10.3 177 473-663 129-313 (439)
30 PF05496 RuvB_N: Holliday junc 99.7 9E-17 2E-21 159.3 7.7 191 469-690 16-210 (233)
31 PLN00020 ribulose bisphosphate 99.7 3.7E-16 8.1E-21 164.6 12.2 154 500-664 144-313 (413)
32 PTZ00361 26 proteosome regulat 99.6 8.3E-16 1.8E-20 169.4 13.5 176 471-665 177-370 (438)
33 KOG0731 AAA+-type ATPase conta 99.6 7.2E-16 1.6E-20 175.5 13.2 172 474-667 308-500 (774)
34 CHL00181 cbbX CbbX; Provisiona 99.6 6.1E-16 1.3E-20 162.7 11.7 177 463-665 9-212 (287)
35 COG0464 SpoVK ATPases of the A 99.6 8E-16 1.7E-20 174.7 13.6 167 476-664 241-425 (494)
36 TIGR01243 CDC48 AAA family ATP 99.6 1.2E-15 2.5E-20 180.8 14.9 172 472-665 448-638 (733)
37 PRK05342 clpX ATP-dependent pr 99.6 2.7E-15 5.9E-20 164.6 14.8 215 468-690 62-356 (412)
38 KOG1051 Chaperone HSP104 and r 99.6 2.2E-15 4.8E-20 174.8 14.4 232 444-687 528-808 (898)
39 KOG0737 AAA+-type ATPase [Post 99.6 1.9E-15 4.2E-20 157.6 12.3 179 476-667 91-279 (386)
40 KOG0726 26S proteasome regulat 99.6 2.9E-16 6.2E-21 157.9 5.7 180 468-666 176-373 (440)
41 TIGR00382 clpX endopeptidase C 99.6 5.9E-15 1.3E-19 161.1 16.4 211 468-690 68-362 (413)
42 KOG0652 26S proteasome regulat 99.6 1.9E-15 4.1E-20 149.8 10.8 172 476-666 170-359 (424)
43 TIGR01241 FtsH_fam ATP-depende 99.6 3.2E-15 6.9E-20 169.5 13.1 171 473-665 51-241 (495)
44 TIGR02881 spore_V_K stage V sp 99.6 8.9E-15 1.9E-19 152.4 14.8 175 478-688 7-207 (261)
45 KOG0735 AAA+-type ATPase [Post 99.6 5.4E-15 1.2E-19 163.6 12.9 170 474-665 664-851 (952)
46 COG2256 MGS1 ATPase related to 99.6 9.8E-15 2.1E-19 153.9 13.7 173 471-689 18-200 (436)
47 KOG0729 26S proteasome regulat 99.6 1.1E-15 2.5E-20 151.8 5.4 180 466-664 166-363 (435)
48 TIGR02880 cbbX_cfxQ probable R 99.6 1.6E-14 3.4E-19 152.1 12.7 173 467-665 12-211 (284)
49 TIGR02903 spore_lon_C ATP-depe 99.6 4.2E-13 9.1E-18 155.1 24.3 279 339-689 64-383 (615)
50 COG2255 RuvB Holliday junction 99.5 2.9E-14 6.4E-19 143.9 11.9 188 471-689 20-211 (332)
51 CHL00176 ftsH cell division pr 99.5 4.3E-14 9.2E-19 162.8 13.9 166 477-664 183-368 (638)
52 PRK07003 DNA polymerase III su 99.5 3.6E-14 7.8E-19 161.7 12.5 182 470-689 9-208 (830)
53 COG0465 HflB ATP-dependent Zn 99.5 5E-14 1.1E-18 158.1 12.5 170 474-665 147-336 (596)
54 KOG0740 AAA+-type ATPase [Post 99.5 5.2E-14 1.1E-18 152.0 11.8 181 471-665 147-336 (428)
55 PRK14956 DNA polymerase III su 99.5 8.2E-14 1.8E-18 153.6 13.5 185 470-689 11-210 (484)
56 PRK05201 hslU ATP-dependent pr 99.5 1.4E-13 3E-18 148.6 14.7 114 571-689 249-378 (443)
57 KOG0742 AAA+-type ATPase [Post 99.5 4.5E-12 9.7E-17 133.0 25.0 172 478-667 356-533 (630)
58 PRK12323 DNA polymerase III su 99.5 1.4E-13 3.1E-18 155.1 13.6 184 470-688 9-212 (700)
59 KOG0651 26S proteasome regulat 99.5 5.6E-14 1.2E-18 143.0 8.8 170 473-661 128-315 (388)
60 TIGR00390 hslU ATP-dependent p 99.5 3.5E-13 7.7E-18 145.3 15.0 115 570-689 246-376 (441)
61 KOG0989 Replication factor C, 99.5 1.4E-13 3E-18 140.5 10.8 178 471-689 30-218 (346)
62 PLN03025 replication factor C 99.5 2.9E-13 6.4E-18 145.1 13.0 174 471-689 7-188 (319)
63 TIGR01243 CDC48 AAA family ATP 99.5 4.5E-13 9.8E-18 158.9 15.2 168 474-663 175-360 (733)
64 COG1219 ClpX ATP-dependent pro 99.5 5E-13 1.1E-17 136.6 13.3 213 469-689 53-344 (408)
65 PRK14962 DNA polymerase III su 99.5 9.2E-13 2E-17 147.3 16.8 185 470-689 7-206 (472)
66 KOG0744 AAA+-type ATPase [Post 99.5 1.8E-13 3.9E-18 140.0 9.4 176 475-666 140-344 (423)
67 PRK14949 DNA polymerase III su 99.5 3.3E-13 7.1E-18 156.7 12.6 185 470-689 9-208 (944)
68 KOG0743 AAA+-type ATPase [Post 99.5 6.6E-13 1.4E-17 142.5 13.9 138 500-664 231-385 (457)
69 PRK14960 DNA polymerase III su 99.5 2.7E-13 5.9E-18 153.2 11.5 182 470-689 8-207 (702)
70 TIGR00635 ruvB Holliday juncti 99.4 1E-12 2.2E-17 140.0 15.4 183 476-689 3-189 (305)
71 PF00004 AAA: ATPase family as 99.4 1.7E-13 3.7E-18 126.5 7.5 120 507-647 1-131 (132)
72 PRK14958 DNA polymerase III su 99.4 2.8E-13 6E-18 153.0 10.5 186 469-689 8-208 (509)
73 CHL00206 ycf2 Ycf2; Provisiona 99.4 3.1E-13 6.7E-18 164.2 10.9 152 500-661 1626-1816(2281)
74 PRK10733 hflB ATP-dependent me 99.4 1E-12 2.2E-17 152.9 14.7 168 476-665 151-338 (644)
75 PRK04195 replication factor C 99.4 8.9E-13 1.9E-17 149.1 13.4 182 471-689 8-190 (482)
76 PRK00080 ruvB Holliday junctio 99.4 1.4E-12 3.1E-17 140.3 14.4 188 471-689 19-210 (328)
77 PRK14961 DNA polymerase III su 99.4 7.3E-13 1.6E-17 144.5 12.0 182 470-689 9-208 (363)
78 PRK07994 DNA polymerase III su 99.4 6.9E-13 1.5E-17 151.9 12.2 184 470-688 9-207 (647)
79 PRK07764 DNA polymerase III su 99.4 1.4E-12 3.1E-17 153.9 14.6 186 469-689 7-209 (824)
80 PRK14964 DNA polymerase III su 99.4 6.4E-13 1.4E-17 148.1 11.0 182 470-689 6-205 (491)
81 COG2812 DnaX DNA polymerase II 99.4 6.3E-13 1.4E-17 147.6 10.4 182 470-689 9-208 (515)
82 PRK08691 DNA polymerase III su 99.4 7.4E-13 1.6E-17 151.1 10.6 182 470-689 9-208 (709)
83 PRK14951 DNA polymerase III su 99.4 1.2E-12 2.7E-17 149.6 11.7 182 470-689 9-213 (618)
84 PRK06645 DNA polymerase III su 99.4 1.8E-12 3.9E-17 145.6 12.5 181 471-689 15-217 (507)
85 PHA02544 44 clamp loader, smal 99.4 3.5E-12 7.6E-17 136.6 14.1 181 471-689 15-197 (316)
86 TIGR02640 gas_vesic_GvpN gas v 99.4 2.9E-12 6.2E-17 133.6 12.4 151 503-662 20-198 (262)
87 TIGR02639 ClpA ATP-dependent C 99.4 3E-12 6.6E-17 151.5 14.0 182 472-689 177-379 (731)
88 PRK14952 DNA polymerase III su 99.4 2.7E-12 5.9E-17 146.3 12.9 185 470-689 6-207 (584)
89 PRK14957 DNA polymerase III su 99.4 8.1E-12 1.8E-16 141.2 16.4 184 470-689 9-208 (546)
90 PRK14963 DNA polymerase III su 99.4 1.3E-11 2.9E-16 139.1 17.4 185 470-689 7-205 (504)
91 PF07724 AAA_2: AAA domain (Cd 99.4 2.1E-13 4.6E-18 132.6 2.2 119 503-631 2-131 (171)
92 PRK14959 DNA polymerase III su 99.3 2.7E-12 5.8E-17 145.9 11.0 185 470-689 9-208 (624)
93 PRK13342 recombination factor 99.3 1E-11 2.2E-16 137.8 14.9 172 471-689 6-184 (413)
94 KOG0732 AAA+-type ATPase conta 99.3 5.9E-12 1.3E-16 147.4 13.1 172 476-664 264-453 (1080)
95 TIGR03345 VI_ClpV1 type VI sec 99.3 9.7E-12 2.1E-16 148.5 15.2 183 471-689 181-384 (852)
96 PRK14965 DNA polymerase III su 99.3 2.8E-12 6E-17 147.4 10.1 185 470-689 9-208 (576)
97 KOG0741 AAA+-type ATPase [Post 99.3 1.6E-12 3.4E-17 140.2 6.3 145 500-665 252-417 (744)
98 PRK05563 DNA polymerase III su 99.3 2.3E-11 5.1E-16 139.2 16.3 182 470-689 9-208 (559)
99 PHA02244 ATPase-like protein 99.3 8E-11 1.7E-15 125.6 19.1 138 502-653 117-265 (383)
100 PRK14969 DNA polymerase III su 99.3 1.3E-11 2.9E-16 140.2 13.6 181 470-688 9-207 (527)
101 TIGR01650 PD_CobS cobaltochela 99.3 8.7E-12 1.9E-16 131.6 10.2 154 503-661 63-232 (327)
102 KOG2028 ATPase related to the 99.3 1E-11 2.2E-16 128.8 9.9 174 477-689 138-324 (554)
103 TIGR02902 spore_lonB ATP-depen 99.3 2.3E-11 5E-16 138.6 13.9 196 472-689 60-293 (531)
104 PRK07133 DNA polymerase III su 99.3 1.8E-11 3.8E-16 141.2 12.8 167 470-664 11-192 (725)
105 PRK05896 DNA polymerase III su 99.3 3.7E-11 8E-16 136.0 14.8 185 470-689 9-208 (605)
106 PRK09111 DNA polymerase III su 99.3 2.5E-11 5.5E-16 139.1 13.6 182 470-689 17-221 (598)
107 COG0714 MoxR-like ATPases [Gen 99.3 2.1E-11 4.5E-16 131.4 11.6 161 471-653 18-193 (329)
108 PRK13341 recombination factor 99.3 2.2E-11 4.7E-16 142.3 12.5 180 471-690 22-206 (725)
109 KOG0730 AAA+-type ATPase [Post 99.3 3.2E-11 7E-16 134.1 12.8 167 477-665 184-367 (693)
110 PRK06647 DNA polymerase III su 99.3 2.7E-11 5.9E-16 138.2 12.5 182 470-689 9-208 (563)
111 PRK08451 DNA polymerase III su 99.3 7.3E-11 1.6E-15 132.8 15.6 182 470-689 7-206 (535)
112 PRK14953 DNA polymerase III su 99.3 1.6E-11 3.4E-16 138.1 10.0 185 470-689 9-208 (486)
113 TIGR02397 dnaX_nterm DNA polym 99.2 7.8E-11 1.7E-15 128.1 15.2 182 470-689 7-206 (355)
114 PRK06305 DNA polymerase III su 99.2 4.6E-11 9.9E-16 133.5 13.3 182 470-689 10-210 (451)
115 KOG0991 Replication factor C, 99.2 1.7E-11 3.6E-16 120.5 8.4 180 468-688 18-201 (333)
116 PRK07940 DNA polymerase III su 99.2 4.2E-11 9E-16 131.1 12.6 163 476-659 4-186 (394)
117 PRK14954 DNA polymerase III su 99.2 5.7E-11 1.2E-15 136.4 14.1 187 469-689 8-216 (620)
118 PRK12402 replication factor C 99.2 1.3E-10 2.8E-15 125.4 15.7 185 470-689 8-214 (337)
119 PRK08181 transposase; Validate 99.2 9.2E-11 2E-15 122.0 13.3 187 420-652 44-245 (269)
120 PF07728 AAA_5: AAA domain (dy 99.2 3E-12 6.5E-17 120.1 2.0 127 506-641 1-139 (139)
121 PRK13531 regulatory ATPase Rav 99.2 5.3E-11 1.2E-15 131.1 11.6 175 468-660 11-192 (498)
122 PRK14955 DNA polymerase III su 99.2 6.7E-11 1.5E-15 130.5 12.4 182 470-689 9-216 (397)
123 COG4555 NatA ABC-type Na+ tran 99.2 6.2E-11 1.4E-15 114.6 10.4 165 484-667 6-234 (245)
124 PRK00440 rfc replication facto 99.2 1.1E-10 2.3E-15 125.0 13.5 175 471-689 11-191 (319)
125 PRK10865 protein disaggregatio 99.2 7.8E-11 1.7E-15 141.2 13.7 181 471-687 172-373 (857)
126 PRK14950 DNA polymerase III su 99.2 1.9E-10 4.2E-15 132.8 15.9 187 469-689 8-209 (585)
127 PRK09183 transposase/IS protei 99.2 8.7E-11 1.9E-15 122.1 11.6 186 420-651 41-242 (259)
128 PRK14948 DNA polymerase III su 99.2 2.3E-10 5E-15 132.1 16.2 170 470-664 9-195 (620)
129 PRK14970 DNA polymerase III su 99.2 1.3E-10 2.9E-15 127.1 13.5 183 469-689 9-197 (367)
130 KOG0745 Putative ATP-dependent 99.2 1.5E-10 3.2E-15 122.8 13.0 178 504-689 226-485 (564)
131 PRK11034 clpA ATP-dependent Cl 99.2 1.1E-10 2.3E-15 137.1 12.6 186 472-689 181-383 (758)
132 PRK14971 DNA polymerase III su 99.2 3.5E-10 7.5E-15 130.6 16.0 183 469-689 9-210 (614)
133 PRK06526 transposase; Provisio 99.2 7.3E-11 1.6E-15 122.1 9.3 188 420-654 37-239 (254)
134 COG1125 OpuBA ABC-type proline 99.2 2.4E-11 5.1E-16 121.4 5.1 165 483-651 5-219 (309)
135 COG4152 ABC-type uncharacteriz 99.2 1.9E-11 4E-16 121.4 4.1 141 482-644 5-203 (300)
136 COG1220 HslU ATP-dependent pro 99.2 4.3E-10 9.4E-15 116.1 13.9 114 571-689 250-379 (444)
137 COG3842 PotA ABC-type spermidi 99.1 1.1E-11 2.5E-16 132.0 2.3 79 482-562 8-87 (352)
138 TIGR03346 chaperone_ClpB ATP-d 99.1 2.4E-10 5.2E-15 137.5 13.3 186 471-688 167-369 (852)
139 CHL00095 clpC Clp protease ATP 99.1 3.8E-10 8.3E-15 135.3 14.6 182 472-689 174-375 (821)
140 COG1131 CcmA ABC-type multidru 99.1 2E-11 4.3E-16 129.1 3.0 150 492-644 18-210 (293)
141 PF07726 AAA_3: ATPase family 99.1 1.7E-11 3.7E-16 111.5 2.1 119 506-642 1-130 (131)
142 COG1116 TauB ABC-type nitrate/ 99.1 2.9E-11 6.2E-16 121.6 3.4 48 493-540 17-65 (248)
143 COG1126 GlnQ ABC-type polar am 99.1 3.2E-11 7E-16 118.1 3.4 158 483-644 6-209 (240)
144 COG1121 ZnuC ABC-type Mn/Zn tr 99.1 2.5E-10 5.4E-15 116.2 9.4 144 495-644 20-212 (254)
145 PRK13407 bchI magnesium chelat 99.1 1.5E-10 3.3E-15 123.8 7.5 174 477-662 8-216 (334)
146 PRK11331 5-methylcytosine-spec 99.1 1.1E-09 2.4E-14 119.9 13.5 158 479-648 177-357 (459)
147 PRK08084 DNA replication initi 99.1 7.4E-10 1.6E-14 113.6 11.5 148 503-690 44-198 (235)
148 COG3839 MalK ABC-type sugar tr 99.1 5.8E-11 1.2E-15 126.0 3.0 77 483-561 7-84 (338)
149 PRK06893 DNA replication initi 99.1 7.5E-10 1.6E-14 113.1 11.0 144 504-690 39-192 (229)
150 TIGR02030 BchI-ChlI magnesium 99.1 3.8E-10 8.3E-15 121.0 9.2 171 477-661 4-218 (337)
151 COG1120 FepC ABC-type cobalami 99.1 4.3E-10 9.2E-15 115.1 8.6 45 496-540 19-64 (258)
152 PRK13537 nodulation ABC transp 99.0 8.3E-11 1.8E-15 125.4 2.3 147 494-644 22-211 (306)
153 COG1118 CysA ABC-type sulfate/ 99.0 4.4E-10 9.6E-15 115.3 7.1 82 482-564 5-89 (345)
154 PF05673 DUF815: Protein of un 99.0 6.1E-09 1.3E-13 105.2 14.1 162 474-665 24-210 (249)
155 smart00763 AAA_PrkA PrkA AAA d 99.0 3.5E-09 7.6E-14 113.2 13.0 63 475-537 49-118 (361)
156 CHL00081 chlI Mg-protoporyphyr 99.0 5.8E-10 1.3E-14 119.6 7.1 173 477-661 17-231 (350)
157 COG1127 Ttg2A ABC-type transpo 99.0 2.9E-10 6.3E-15 113.1 3.9 63 479-541 8-71 (263)
158 cd03216 ABC_Carb_Monos_I This 99.0 1.1E-09 2.4E-14 105.8 8.0 126 500-644 22-155 (163)
159 smart00464 LON Found in ATP-de 99.0 3.5E-09 7.7E-14 92.2 10.3 48 148-195 1-48 (92)
160 PRK05564 DNA polymerase III su 99.0 3.5E-09 7.5E-14 113.4 12.2 157 476-661 3-164 (313)
161 PRK09112 DNA polymerase III su 99.0 4.2E-09 9.2E-14 113.9 12.7 161 476-660 22-211 (351)
162 TIGR00678 holB DNA polymerase 99.0 7.3E-09 1.6E-13 102.5 13.2 136 504-661 14-167 (188)
163 TIGR02928 orc1/cdc6 family rep 99.0 1.8E-08 3.8E-13 110.1 17.5 172 477-663 15-213 (365)
164 PF01078 Mg_chelatase: Magnesi 99.0 1E-09 2.2E-14 108.5 6.6 155 477-652 3-205 (206)
165 COG0470 HolB ATPase involved i 98.9 6.6E-09 1.4E-13 111.3 13.3 142 478-654 2-173 (325)
166 PRK13536 nodulation factor exp 98.9 1.3E-09 2.8E-14 117.7 7.7 147 494-644 56-245 (340)
167 PRK07399 DNA polymerase III su 98.9 5.5E-09 1.2E-13 111.4 12.3 162 476-662 3-195 (314)
168 PRK08058 DNA polymerase III su 98.9 2.9E-09 6.3E-14 114.7 10.0 161 476-660 4-180 (329)
169 PRK07471 DNA polymerase III su 98.9 3.4E-09 7.4E-14 115.2 10.5 165 474-662 16-213 (365)
170 PRK08903 DnaA regulatory inact 98.9 8.4E-09 1.8E-13 105.1 12.8 139 502-689 40-187 (227)
171 cd03222 ABC_RNaseL_inhibitor T 98.9 1.9E-09 4.1E-14 105.5 7.6 125 500-644 21-145 (177)
172 PRK08727 hypothetical protein; 98.9 5.5E-09 1.2E-13 107.1 11.3 146 504-690 41-193 (233)
173 PRK00149 dnaA chromosomal repl 98.9 2.9E-09 6.3E-14 119.7 9.8 152 504-690 148-311 (450)
174 TIGR00362 DnaA chromosomal rep 98.9 3.9E-09 8.4E-14 117.1 10.6 152 504-690 136-299 (405)
175 cd03228 ABCC_MRP_Like The MRP 98.9 3.4E-09 7.3E-14 103.3 8.7 124 500-644 24-167 (171)
176 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.9 3E-09 6.4E-14 100.7 7.9 113 500-644 22-140 (144)
177 smart00350 MCM minichromosome 98.9 1.2E-08 2.6E-13 116.1 14.2 183 471-664 197-402 (509)
178 COG1124 DppF ABC-type dipeptid 98.9 2.9E-09 6.3E-14 106.5 8.0 47 494-540 22-69 (252)
179 TIGR01188 drrA daunorubicin re 98.9 2.3E-09 5.1E-14 114.1 7.6 141 500-644 15-197 (302)
180 PRK00411 cdc6 cell division co 98.9 3.9E-08 8.5E-13 108.6 17.7 189 477-689 30-239 (394)
181 PRK05642 DNA replication initi 98.9 9.7E-09 2.1E-13 105.3 11.8 145 505-690 46-197 (234)
182 COG4586 ABC-type uncharacteriz 98.9 3E-09 6.4E-14 107.5 7.7 49 494-542 39-88 (325)
183 PRK14086 dnaA chromosomal repl 98.9 5.3E-09 1.1E-13 118.8 10.6 153 505-690 315-477 (617)
184 PF13177 DNA_pol3_delta2: DNA 98.9 1.9E-09 4.1E-14 104.2 5.9 143 481-649 1-161 (162)
185 cd00009 AAA The AAA+ (ATPases 98.9 2.4E-08 5.1E-13 92.7 13.2 143 481-647 2-150 (151)
186 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.9E-08 4.2E-13 102.1 13.3 159 481-689 21-189 (226)
187 PRK12422 chromosomal replicati 98.9 5.2E-09 1.1E-13 116.7 9.8 151 505-690 142-302 (445)
188 TIGR03522 GldA_ABC_ATP gliding 98.9 3.8E-09 8.2E-14 112.4 8.2 144 496-644 19-205 (301)
189 cd03246 ABCC_Protease_Secretio 98.9 5E-09 1.1E-13 102.2 8.4 126 500-645 24-169 (173)
190 cd03294 ABC_Pro_Gly_Bertaine T 98.9 3.9E-09 8.5E-14 110.5 7.4 57 484-540 29-86 (269)
191 cd03230 ABC_DR_subfamily_A Thi 98.8 8.1E-09 1.8E-13 100.8 8.6 127 500-645 22-169 (173)
192 PTZ00112 origin recognition co 98.8 4.2E-08 9.1E-13 113.3 15.5 185 477-689 755-966 (1164)
193 cd03233 ABC_PDR_domain1 The pl 98.8 9.8E-09 2.1E-13 102.8 8.8 133 496-645 24-194 (202)
194 PRK11650 ugpC glycerol-3-phosp 98.8 6E-09 1.3E-13 113.3 7.8 41 500-540 26-66 (356)
195 COG3638 ABC-type phosphate/pho 98.8 3E-09 6.4E-14 105.7 4.9 168 493-663 18-245 (258)
196 TIGR02314 ABC_MetN D-methionin 98.8 5.8E-09 1.3E-13 112.6 7.6 147 495-644 21-214 (343)
197 cd03229 ABC_Class3 This class 98.8 8.8E-09 1.9E-13 101.0 8.3 127 500-644 22-174 (178)
198 cd03214 ABC_Iron-Siderophores_ 98.8 1.1E-08 2.5E-13 100.4 9.0 129 500-645 21-172 (180)
199 TIGR01186 proV glycine betaine 98.8 3.1E-09 6.8E-14 115.4 5.4 46 495-540 9-55 (363)
200 TIGR01288 nodI ATP-binding ABC 98.8 6.9E-09 1.5E-13 110.6 7.9 145 496-644 21-208 (303)
201 TIGR02442 Cob-chelat-sub cobal 98.8 1.2E-08 2.5E-13 119.0 10.4 164 477-660 4-212 (633)
202 cd03259 ABC_Carb_Solutes_like 98.8 1.1E-08 2.4E-13 103.2 8.7 41 500-540 22-62 (213)
203 TIGR03415 ABC_choXWV_ATP choli 98.8 5.6E-09 1.2E-13 114.0 6.9 57 483-539 28-85 (382)
204 COG1122 CbiO ABC-type cobalt t 98.8 6.9E-09 1.5E-13 105.8 7.2 129 500-645 26-213 (235)
205 cd03261 ABC_Org_Solvent_Resist 98.8 9.3E-09 2E-13 105.4 8.2 41 500-540 22-62 (235)
206 cd03247 ABCC_cytochrome_bd The 98.8 1.1E-08 2.4E-13 100.3 8.4 125 500-645 24-170 (178)
207 cd03263 ABC_subfamily_A The AB 98.8 9.4E-09 2E-13 104.2 8.1 41 500-540 24-64 (220)
208 cd03258 ABC_MetN_methionine_tr 98.8 2.3E-09 5E-14 109.7 3.6 41 500-540 27-67 (233)
209 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.8 1.2E-08 2.6E-13 103.2 8.8 41 500-540 26-66 (218)
210 COG1135 AbcC ABC-type metal io 98.8 5.3E-10 1.2E-14 115.0 -1.2 147 494-644 21-215 (339)
211 TIGR00960 3a0501s02 Type II (G 98.8 1.1E-08 2.4E-13 103.4 8.4 41 500-540 25-65 (216)
212 COG1117 PstB ABC-type phosphat 98.8 8.2E-09 1.8E-13 101.0 7.0 72 489-560 17-96 (253)
213 PRK05707 DNA polymerase III su 98.8 2.4E-08 5.2E-13 107.1 11.4 137 504-661 22-177 (328)
214 cd00267 ABC_ATPase ABC (ATP-bi 98.8 9.8E-09 2.1E-13 98.5 7.5 126 500-644 21-153 (157)
215 cd03226 ABC_cobalt_CbiO_domain 98.8 1.3E-08 2.8E-13 102.1 8.5 139 500-645 22-200 (205)
216 cd03265 ABC_DrrA DrrA is the A 98.8 1.2E-08 2.7E-13 103.4 8.4 41 500-540 22-62 (220)
217 PRK06620 hypothetical protein; 98.8 1.9E-08 4.1E-13 101.6 9.7 129 505-690 45-178 (214)
218 PRK10070 glycine betaine trans 98.8 6.7E-09 1.5E-13 114.2 6.8 58 483-540 32-90 (400)
219 COG1134 TagH ABC-type polysacc 98.8 1.5E-08 3.2E-13 101.6 8.5 48 493-540 41-89 (249)
220 TIGR00602 rad24 checkpoint pro 98.8 6.3E-08 1.4E-12 111.5 14.9 63 469-532 76-138 (637)
221 TIGR02974 phageshock_pspF psp 98.8 2.5E-08 5.4E-13 107.3 10.9 175 503-690 21-213 (329)
222 TIGR03258 PhnT 2-aminoethylpho 98.8 9E-09 1.9E-13 112.0 7.5 41 500-540 27-69 (362)
223 cd03215 ABC_Carb_Monos_II This 98.8 1.1E-08 2.4E-13 100.6 7.5 132 495-645 16-178 (182)
224 COG3604 FhlA Transcriptional r 98.8 2.4E-08 5.2E-13 108.6 10.4 196 478-690 224-436 (550)
225 cd03225 ABC_cobalt_CbiO_domain 98.8 1.2E-08 2.5E-13 102.8 7.6 41 500-540 23-63 (211)
226 COG3840 ThiQ ABC-type thiamine 98.8 2.6E-08 5.5E-13 95.2 9.3 42 500-541 21-62 (231)
227 COG0411 LivG ABC-type branched 98.8 1.5E-09 3.3E-14 108.6 1.0 58 483-540 8-66 (250)
228 PRK11153 metN DL-methionine tr 98.8 1.1E-08 2.3E-13 110.9 7.7 45 496-540 22-67 (343)
229 cd03266 ABC_NatA_sodium_export 98.8 1.4E-08 2.9E-13 102.9 8.0 41 500-540 27-67 (218)
230 COG1136 SalX ABC-type antimicr 98.8 1.9E-08 4.1E-13 101.1 8.8 141 500-644 27-215 (226)
231 TIGR02673 FtsE cell division A 98.8 1.3E-08 2.8E-13 102.8 7.5 41 500-540 24-64 (214)
232 cd03293 ABC_NrtD_SsuB_transpor 98.8 2E-08 4.4E-13 101.8 8.9 41 500-540 26-66 (220)
233 cd03269 ABC_putative_ATPase Th 98.8 2E-08 4.3E-13 101.1 8.5 41 500-540 22-62 (210)
234 TIGR03265 PhnT2 putative 2-ami 98.8 1.4E-08 3.1E-13 110.2 7.9 41 500-540 26-66 (353)
235 PRK11432 fbpC ferric transport 98.8 1.4E-08 3.1E-13 110.1 7.9 45 496-540 23-68 (351)
236 cd03218 ABC_YhbG The ABC trans 98.8 1.9E-08 4.2E-13 102.8 8.3 41 500-540 22-62 (232)
237 PRK14088 dnaA chromosomal repl 98.8 1.9E-08 4.1E-13 112.4 8.9 152 505-690 131-294 (440)
238 PRK09087 hypothetical protein; 98.8 2.3E-08 5E-13 101.8 8.7 134 504-690 44-184 (226)
239 PRK11000 maltose/maltodextrin 98.7 1.5E-08 3.3E-13 110.7 7.8 41 500-540 25-65 (369)
240 COG2884 FtsE Predicted ATPase 98.7 5.1E-09 1.1E-13 100.7 3.5 148 483-633 5-200 (223)
241 cd03268 ABC_BcrA_bacitracin_re 98.7 2.4E-08 5.1E-13 100.4 8.6 41 500-540 22-62 (208)
242 cd03301 ABC_MalK_N The N-termi 98.7 2.5E-08 5.5E-13 100.5 8.6 41 500-540 22-62 (213)
243 PRK09536 btuD corrinoid ABC tr 98.7 1.6E-08 3.5E-13 111.2 7.7 46 495-540 19-65 (402)
244 PF00308 Bac_DnaA: Bacterial d 98.7 2.5E-08 5.4E-13 101.2 8.4 153 504-690 34-197 (219)
245 PRK06871 DNA polymerase III su 98.7 5.8E-08 1.3E-12 103.6 11.6 136 504-660 24-177 (325)
246 PRK13652 cbiO cobalt transport 98.7 1.8E-08 3.8E-13 106.0 7.6 46 495-540 20-66 (277)
247 cd03262 ABC_HisP_GlnQ_permease 98.7 2.3E-08 5.1E-13 100.7 8.1 41 500-540 22-62 (213)
248 PRK11607 potG putrescine trans 98.7 1.9E-08 4.2E-13 110.1 8.0 59 500-560 41-99 (377)
249 PRK10908 cell division protein 98.7 2.4E-08 5.3E-13 101.4 8.2 41 500-540 24-64 (222)
250 PRK09452 potA putrescine/sperm 98.7 1.9E-08 4.1E-13 110.0 7.8 41 500-540 36-76 (375)
251 COG0410 LivF ABC-type branched 98.7 1E-08 2.2E-13 101.8 5.2 70 490-560 14-86 (237)
252 COG3829 RocR Transcriptional r 98.7 6.2E-08 1.4E-12 106.8 11.5 196 478-690 246-459 (560)
253 cd03223 ABCD_peroxisomal_ALDP 98.7 4.7E-08 1E-12 94.8 9.3 123 500-644 23-160 (166)
254 PRK04132 replication factor C 98.7 4.7E-08 1E-12 115.3 11.0 144 506-689 566-719 (846)
255 TIGR02315 ABC_phnC phosphonate 98.7 1.3E-08 2.7E-13 104.9 5.4 45 496-540 19-64 (243)
256 cd03213 ABCG_EPDR ABCG transpo 98.7 4E-08 8.6E-13 97.8 8.8 124 500-644 31-185 (194)
257 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 4.5E-08 9.8E-13 100.4 9.4 41 500-540 23-63 (236)
258 PRK14250 phosphate ABC transpo 98.7 3.2E-08 6.9E-13 101.9 8.3 41 500-540 25-65 (241)
259 cd03264 ABC_drug_resistance_li 98.7 3.2E-08 6.9E-13 99.7 8.1 40 500-540 22-61 (211)
260 COG2204 AtoC Response regulato 98.7 5.2E-08 1.1E-12 107.4 10.2 197 476-690 140-354 (464)
261 PRK11247 ssuB aliphatic sulfon 98.7 4.4E-08 9.5E-13 101.9 9.2 46 495-540 28-74 (257)
262 TIGR01817 nifA Nif-specific re 98.7 9.8E-08 2.1E-12 109.7 13.0 194 478-690 197-408 (534)
263 TIGR03410 urea_trans_UrtE urea 98.7 2.9E-08 6.3E-13 101.4 7.7 41 500-540 22-62 (230)
264 PRK13647 cbiO cobalt transport 98.7 2.8E-08 6.1E-13 104.3 7.8 144 496-644 22-211 (274)
265 cd03298 ABC_ThiQ_thiamine_tran 98.7 3.4E-08 7.5E-13 99.4 8.1 41 500-540 20-60 (211)
266 PRK09493 glnQ glutamine ABC tr 98.7 3.5E-08 7.6E-13 101.4 8.3 41 500-540 23-63 (240)
267 TIGR00368 Mg chelatase-related 98.7 5.2E-08 1.1E-12 109.9 10.3 159 477-653 192-395 (499)
268 PRK13650 cbiO cobalt transport 98.7 2.4E-08 5.3E-13 105.1 7.2 46 495-540 23-69 (279)
269 PRK15112 antimicrobial peptide 98.7 2.8E-08 6.1E-13 103.9 7.7 45 496-540 30-75 (267)
270 cd03257 ABC_NikE_OppD_transpor 98.7 3E-08 6.6E-13 100.9 7.7 41 500-540 27-67 (228)
271 COG2274 SunT ABC-type bacterio 98.7 3.4E-08 7.4E-13 115.4 9.0 129 495-644 489-680 (709)
272 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.7 2.3E-08 5E-13 101.8 6.6 53 488-540 31-84 (224)
273 PF01695 IstB_IS21: IstB-like 98.7 7.4E-09 1.6E-13 101.6 2.7 118 500-641 43-171 (178)
274 PRK11144 modC molybdate transp 98.7 3.9E-08 8.4E-13 107.0 8.5 41 500-540 20-60 (352)
275 cd03224 ABC_TM1139_LivF_branch 98.7 3.5E-08 7.7E-13 100.1 7.7 41 500-540 22-62 (222)
276 cd03292 ABC_FtsE_transporter F 98.7 4.1E-08 8.9E-13 99.0 8.1 41 500-540 23-63 (214)
277 cd03295 ABC_OpuCA_Osmoprotecti 98.7 4.2E-08 9.1E-13 101.0 8.2 41 500-540 23-63 (242)
278 cd03267 ABC_NatA_like Similar 98.7 5.4E-08 1.2E-12 99.9 9.0 45 496-540 38-83 (236)
279 PF06068 TIP49: TIP49 C-termin 98.7 4E-07 8.6E-12 96.8 15.5 62 476-538 23-86 (398)
280 PRK13648 cbiO cobalt transport 98.7 5E-08 1.1E-12 102.1 8.8 41 500-540 31-71 (269)
281 PRK13543 cytochrome c biogenes 98.7 7.4E-08 1.6E-12 97.4 9.7 41 500-540 33-73 (214)
282 COG0542 clpA ATP-binding subun 98.7 1.6E-07 3.5E-12 108.8 13.5 182 471-688 164-366 (786)
283 PRK11248 tauB taurine transpor 98.7 5.6E-08 1.2E-12 101.0 8.7 41 500-540 23-63 (255)
284 cd03296 ABC_CysA_sulfate_impor 98.7 6.2E-08 1.3E-12 99.6 8.9 41 500-540 24-64 (239)
285 PRK13636 cbiO cobalt transport 98.7 3.5E-08 7.5E-13 104.2 7.2 45 496-540 23-68 (283)
286 PRK09862 putative ATP-dependen 98.7 3.1E-08 6.8E-13 111.2 7.2 157 477-650 191-389 (506)
287 KOG0736 Peroxisome assembly fa 98.7 8.1E-08 1.8E-12 108.6 10.3 151 501-666 428-580 (953)
288 PRK05022 anaerobic nitric oxid 98.7 1.6E-07 3.5E-12 107.2 13.0 195 478-690 188-400 (509)
289 PRK13634 cbiO cobalt transport 98.7 3.8E-08 8.2E-13 104.2 7.4 146 495-644 23-219 (290)
290 PRK13548 hmuV hemin importer A 98.7 4.6E-08 9.9E-13 101.8 7.8 41 500-540 24-64 (258)
291 PF00158 Sigma54_activat: Sigm 98.7 2.5E-08 5.5E-13 96.8 5.5 130 503-643 21-164 (168)
292 cd03217 ABC_FeS_Assembly ABC-t 98.7 5.3E-08 1.1E-12 97.4 7.9 126 500-644 22-178 (200)
293 cd03237 ABC_RNaseL_inhibitor_d 98.7 5.7E-08 1.2E-12 100.4 8.4 40 500-539 21-60 (246)
294 TIGR01277 thiQ thiamine ABC tr 98.7 6.3E-08 1.4E-12 97.8 8.5 41 500-540 20-60 (213)
295 PRK13646 cbiO cobalt transport 98.7 3.8E-08 8.3E-13 104.0 7.2 146 495-644 23-219 (286)
296 cd03256 ABC_PhnC_transporter A 98.7 5.5E-08 1.2E-12 100.0 8.2 41 500-540 23-63 (241)
297 PRK11614 livF leucine/isoleuci 98.7 4.8E-08 1E-12 100.3 7.6 41 500-540 27-67 (237)
298 PRK13643 cbiO cobalt transport 98.6 4.2E-08 9.1E-13 103.8 7.3 46 496-541 23-69 (288)
299 PRK13637 cbiO cobalt transport 98.6 4.4E-08 9.5E-13 103.6 7.4 146 495-644 23-218 (287)
300 PRK13635 cbiO cobalt transport 98.6 4.9E-08 1.1E-12 102.8 7.7 46 495-540 23-69 (279)
301 PTZ00111 DNA replication licen 98.6 6.6E-08 1.4E-12 113.6 9.4 178 471-663 444-658 (915)
302 TIGR02142 modC_ABC molybdenum 98.6 5.9E-08 1.3E-12 105.6 8.6 41 500-540 19-59 (354)
303 cd03235 ABC_Metallic_Cations A 98.6 5.4E-08 1.2E-12 98.2 7.7 41 500-540 21-61 (213)
304 TIGR03005 ectoine_ehuA ectoine 98.6 6.1E-08 1.3E-12 100.4 8.2 41 500-540 22-62 (252)
305 PRK13632 cbiO cobalt transport 98.6 8.3E-08 1.8E-12 100.6 9.2 46 495-540 25-71 (271)
306 cd03260 ABC_PstB_phosphate_tra 98.6 9.6E-08 2.1E-12 97.3 9.4 45 496-540 17-67 (227)
307 PRK11022 dppD dipeptide transp 98.6 7.1E-08 1.5E-12 103.8 8.7 147 495-644 23-227 (326)
308 PRK09544 znuC high-affinity zi 98.6 8.3E-08 1.8E-12 99.5 9.0 40 500-539 26-65 (251)
309 TIGR03740 galliderm_ABC gallid 98.6 9.5E-08 2.1E-12 97.1 9.3 41 500-540 22-62 (223)
310 PRK13631 cbiO cobalt transport 98.6 4.4E-08 9.6E-13 105.0 7.1 46 495-540 42-88 (320)
311 PRK10253 iron-enterobactin tra 98.6 5.8E-08 1.3E-12 101.5 7.8 41 500-540 29-69 (265)
312 cd03231 ABC_CcmA_heme_exporter 98.6 9.6E-08 2.1E-12 95.6 8.9 41 500-540 22-62 (201)
313 TIGR02770 nickel_nikD nickel i 98.6 7.8E-08 1.7E-12 98.3 8.3 41 500-540 8-52 (230)
314 PRK11701 phnK phosphonate C-P 98.6 2.2E-08 4.7E-13 104.2 4.3 41 500-540 28-68 (258)
315 TIGR02211 LolD_lipo_ex lipopro 98.6 7.3E-08 1.6E-12 97.7 8.0 41 500-540 27-67 (221)
316 KOG4159 Predicted E3 ubiquitin 98.6 5.7E-08 1.2E-12 105.1 7.5 109 141-269 169-283 (398)
317 PRK13641 cbiO cobalt transport 98.6 5.1E-08 1.1E-12 103.1 7.1 146 495-644 23-218 (287)
318 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.6 9.7E-08 2.1E-12 98.0 9.0 41 500-540 25-65 (238)
319 PRK10247 putative ABC transpor 98.6 2.5E-08 5.3E-13 101.7 4.5 45 496-540 24-69 (225)
320 PRK11264 putative amino-acid A 98.6 8.2E-08 1.8E-12 99.3 8.5 41 500-540 25-65 (250)
321 COG2607 Predicted ATPase (AAA+ 98.6 1.1E-06 2.3E-11 87.7 15.8 156 477-664 60-241 (287)
322 cd03251 ABCC_MsbA MsbA is an e 98.6 9.9E-08 2.1E-12 97.7 8.9 41 500-540 24-64 (234)
323 PRK13638 cbiO cobalt transport 98.6 6E-08 1.3E-12 101.7 7.4 41 500-540 23-63 (271)
324 PRK13538 cytochrome c biogenes 98.6 1E-07 2.2E-12 95.6 8.7 41 500-540 23-63 (204)
325 PRK10771 thiQ thiamine transpo 98.6 8.6E-08 1.9E-12 98.1 8.3 41 500-540 21-61 (232)
326 PRK08769 DNA polymerase III su 98.6 2.7E-07 5.9E-12 98.3 12.4 136 505-660 27-183 (319)
327 PRK10575 iron-hydroxamate tran 98.6 7.8E-08 1.7E-12 100.5 8.1 41 500-540 33-73 (265)
328 TIGR03873 F420-0_ABC_ATP propo 98.6 7.5E-08 1.6E-12 100.0 7.9 41 500-540 23-63 (256)
329 KOG0478 DNA replication licens 98.6 1.7E-07 3.7E-12 104.9 11.0 176 471-659 423-623 (804)
330 PRK11608 pspF phage shock prot 98.6 2.4E-07 5.1E-12 99.7 11.9 197 477-690 6-220 (326)
331 PRK10851 sulfate/thiosulfate t 98.6 7.1E-08 1.5E-12 104.8 7.9 41 500-540 24-64 (353)
332 COG1224 TIP49 DNA helicase TIP 98.6 1E-06 2.2E-11 92.3 15.7 58 622-689 322-391 (450)
333 COG1221 PspF Transcriptional r 98.6 1.2E-07 2.6E-12 102.8 9.4 196 477-690 78-289 (403)
334 PRK11308 dppF dipeptide transp 98.6 6.2E-08 1.3E-12 104.3 7.2 147 495-644 31-228 (327)
335 PRK14087 dnaA chromosomal repl 98.6 1.3E-07 2.8E-12 105.8 10.1 157 505-690 142-308 (450)
336 PRK06090 DNA polymerase III su 98.6 6.3E-07 1.4E-11 95.5 14.7 136 504-660 25-178 (319)
337 PRK11124 artP arginine transpo 98.6 9.6E-08 2.1E-12 98.3 8.3 41 500-540 24-64 (242)
338 PRK11831 putative ABC transpor 98.6 9E-08 1.9E-12 100.3 8.2 41 500-540 29-69 (269)
339 COG4525 TauB ABC-type taurine 98.6 1.3E-07 2.8E-12 91.3 8.4 41 500-540 27-67 (259)
340 TIGR03608 L_ocin_972_ABC putat 98.6 1.1E-07 2.5E-12 95.2 8.5 41 500-540 20-60 (206)
341 PRK11231 fecE iron-dicitrate t 98.6 9.7E-08 2.1E-12 99.2 8.2 41 500-540 24-64 (255)
342 TIGR02769 nickel_nikE nickel i 98.6 8.1E-08 1.8E-12 100.4 7.7 41 500-540 33-73 (265)
343 TIGR01184 ntrCD nitrate transp 98.6 1E-07 2.2E-12 97.5 8.2 41 500-540 7-47 (230)
344 PRK11629 lolD lipoprotein tran 98.6 1E-07 2.2E-12 97.7 8.1 45 496-540 26-71 (233)
345 COG4175 ProV ABC-type proline/ 98.6 8.3E-08 1.8E-12 99.0 7.4 128 500-644 50-238 (386)
346 cd03369 ABCC_NFT1 Domain 2 of 98.6 1.4E-07 3.1E-12 94.6 9.1 41 500-540 30-70 (207)
347 PRK10895 lipopolysaccharide AB 98.6 9.7E-08 2.1E-12 98.2 8.0 41 500-540 25-65 (241)
348 TIGR03411 urea_trans_UrtD urea 98.6 2.4E-08 5.2E-13 102.8 3.5 41 500-540 24-64 (242)
349 PRK09473 oppD oligopeptide tra 98.6 1.1E-07 2.5E-12 102.3 8.7 147 495-644 32-235 (330)
350 cd03232 ABC_PDR_domain2 The pl 98.6 1.5E-07 3.3E-12 93.4 9.0 41 500-540 29-71 (192)
351 PRK14247 phosphate ABC transpo 98.6 1.4E-07 3E-12 97.7 9.0 41 500-540 25-70 (250)
352 PRK06964 DNA polymerase III su 98.6 1.1E-07 2.4E-12 102.2 8.4 69 573-660 134-202 (342)
353 PRK13651 cobalt transporter AT 98.6 6.8E-08 1.5E-12 102.9 6.9 44 496-539 24-68 (305)
354 cd03254 ABCC_Glucan_exporter_l 98.6 1.6E-07 3.4E-12 95.9 9.2 41 500-540 25-65 (229)
355 KOG1969 DNA replication checkp 98.6 3.4E-07 7.3E-12 103.3 12.4 149 500-665 322-484 (877)
356 cd03300 ABC_PotA_N PotA is an 98.6 1.4E-07 2.9E-12 96.6 8.7 41 500-540 22-62 (232)
357 COG1484 DnaC DNA replication p 98.6 4.3E-07 9.3E-12 94.1 12.5 153 453-641 67-230 (254)
358 TIGR01257 rim_protein retinal- 98.6 5.9E-08 1.3E-12 123.7 7.2 162 479-644 1937-2143(2272)
359 COG1239 ChlI Mg-chelatase subu 98.6 1.6E-07 3.4E-12 101.0 9.3 178 474-663 14-233 (423)
360 cd03253 ABCC_ATM1_transporter 98.6 1.4E-07 3.1E-12 96.6 8.8 41 500-540 23-63 (236)
361 cd03244 ABCC_MRP_domain2 Domai 98.6 1.7E-07 3.6E-12 95.1 9.1 41 500-540 26-66 (221)
362 PRK13640 cbiO cobalt transport 98.6 1.1E-07 2.4E-12 100.2 8.1 45 496-540 24-72 (282)
363 PRK13644 cbiO cobalt transport 98.6 9E-08 1.9E-12 100.6 7.3 45 496-540 19-64 (274)
364 TIGR00968 3a0106s01 sulfate AB 98.6 1.4E-07 3.1E-12 96.8 8.6 41 500-540 22-62 (237)
365 COG1137 YhbG ABC-type (unclass 98.6 1.1E-08 2.5E-13 99.0 0.4 78 483-561 8-88 (243)
366 PRK15429 formate hydrogenlyase 98.6 6.1E-07 1.3E-11 106.2 15.0 196 477-690 376-589 (686)
367 KOG0990 Replication factor C, 98.6 1E-07 2.3E-12 98.4 7.4 163 473-666 37-207 (360)
368 PRK13649 cbiO cobalt transport 98.6 9.7E-08 2.1E-12 100.6 7.4 41 500-540 29-69 (280)
369 COG3845 ABC-type uncharacteriz 98.6 3.6E-08 7.7E-13 107.4 4.0 159 482-644 7-213 (501)
370 TIGR02031 BchD-ChlD magnesium 98.6 5E-08 1.1E-12 112.7 5.5 170 505-689 17-214 (589)
371 PRK13639 cbiO cobalt transport 98.6 1.1E-07 2.5E-12 99.8 7.7 41 500-540 24-64 (275)
372 cd03245 ABCC_bacteriocin_expor 98.6 1.6E-07 3.4E-12 95.2 8.5 41 500-540 26-66 (220)
373 cd03252 ABCC_Hemolysin The ABC 98.6 1.7E-07 3.8E-12 96.1 8.9 41 500-540 24-64 (237)
374 COG4619 ABC-type uncharacteriz 98.6 9.6E-08 2.1E-12 90.1 6.2 41 500-540 25-65 (223)
375 PRK13645 cbiO cobalt transport 98.6 1.1E-07 2.5E-12 100.6 7.7 41 500-540 33-73 (289)
376 PRK15079 oligopeptide ABC tran 98.6 1E-07 2.2E-12 102.8 7.3 147 495-644 37-235 (331)
377 PRK10584 putative ABC transpor 98.6 1.4E-07 3.1E-12 96.1 8.0 41 500-540 32-72 (228)
378 PRK07993 DNA polymerase III su 98.6 2.1E-07 4.6E-12 100.1 9.6 135 504-659 24-177 (334)
379 smart00382 AAA ATPases associa 98.6 2.1E-07 4.5E-12 85.4 8.2 82 504-585 2-92 (148)
380 TIGR02323 CP_lyasePhnK phospho 98.6 1.7E-07 3.8E-12 97.1 8.5 41 500-540 25-65 (253)
381 cd03248 ABCC_TAP TAP, the Tran 98.6 2.3E-07 5E-12 94.5 9.2 41 500-540 36-76 (226)
382 PRK15177 Vi polysaccharide exp 98.5 1.3E-07 2.9E-12 95.5 7.3 37 500-536 9-45 (213)
383 KOG2035 Replication factor C, 98.5 9.6E-07 2.1E-11 89.6 13.2 156 504-689 34-216 (351)
384 PRK03695 vitamin B12-transport 98.5 1.3E-07 2.8E-12 97.8 7.4 45 495-540 12-57 (248)
385 cd03297 ABC_ModC_molybdenum_tr 98.5 1.7E-07 3.6E-12 94.7 7.9 40 500-540 20-59 (214)
386 cd03219 ABC_Mj1267_LivG_branch 98.5 1.6E-07 3.4E-12 96.3 7.9 41 500-540 22-62 (236)
387 PRK10619 histidine/lysine/argi 98.5 1.8E-07 3.9E-12 97.2 8.4 41 500-540 27-67 (257)
388 TIGR01166 cbiO cobalt transpor 98.5 1.9E-07 4.2E-12 92.4 8.2 41 500-540 14-54 (190)
389 COG4608 AppF ABC-type oligopep 98.5 1.5E-07 3.3E-12 96.1 7.6 136 495-647 29-186 (268)
390 PRK13547 hmuV hemin importer A 98.5 1.6E-07 3.4E-12 98.6 7.9 41 500-540 23-71 (272)
391 PRK13633 cobalt transporter AT 98.5 1.7E-07 3.7E-12 98.7 8.1 45 496-540 27-72 (280)
392 COG1241 MCM2 Predicted ATPase 98.5 1E-07 2.3E-12 109.4 6.9 183 471-665 280-486 (682)
393 cd03234 ABCG_White The White s 98.5 2.7E-07 5.8E-12 94.0 9.3 41 500-540 29-72 (226)
394 PRK14269 phosphate ABC transpo 98.5 2.4E-07 5.2E-12 95.7 8.9 41 500-540 24-67 (246)
395 PRK14267 phosphate ABC transpo 98.5 2E-07 4.4E-12 96.6 8.4 41 500-540 26-71 (253)
396 TIGR01189 ccmA heme ABC export 98.5 3E-07 6.4E-12 91.7 9.1 41 500-540 22-62 (198)
397 PRK11176 lipid transporter ATP 98.5 2.1E-07 4.5E-12 108.2 9.1 65 495-560 359-425 (582)
398 COG1119 ModF ABC-type molybden 98.5 4E-07 8.6E-12 91.4 9.6 43 494-536 46-89 (257)
399 PRK10419 nikE nickel transport 98.5 1.7E-07 3.8E-12 98.1 7.5 45 496-540 29-74 (268)
400 PRK13546 teichoic acids export 98.5 5.2E-07 1.1E-11 94.2 11.1 40 500-539 46-85 (264)
401 TIGR02982 heterocyst_DevA ABC 98.5 3E-07 6.5E-12 93.3 9.0 41 500-540 27-67 (220)
402 PRK14242 phosphate transporter 98.5 2.9E-07 6.4E-12 95.4 9.1 41 500-540 28-73 (253)
403 COG5271 MDN1 AAA ATPase contai 98.5 2.1E-07 4.5E-12 110.8 8.7 154 504-663 1543-1704(4600)
404 PRK14274 phosphate ABC transpo 98.5 6.3E-08 1.4E-12 100.8 4.1 46 495-540 28-79 (259)
405 PRK15439 autoinducer 2 ABC tra 98.5 1.5E-07 3.3E-12 107.5 7.7 46 495-540 27-73 (510)
406 COG1474 CDC6 Cdc6-related prot 98.5 1E-06 2.2E-11 95.9 13.6 184 479-688 19-221 (366)
407 TIGR03771 anch_rpt_ABC anchore 98.5 3.4E-07 7.4E-12 93.1 9.4 40 501-540 3-42 (223)
408 cd03238 ABC_UvrA The excision 98.5 2.6E-07 5.7E-12 90.4 8.0 122 500-644 17-161 (176)
409 PRK15424 propionate catabolism 98.5 3.1E-07 6.7E-12 104.4 9.7 175 477-665 219-419 (538)
410 PRK13540 cytochrome c biogenes 98.5 2.7E-07 5.9E-12 92.2 8.3 41 500-540 23-63 (200)
411 cd03299 ABC_ModC_like Archeal 98.5 2.6E-07 5.5E-12 94.8 8.3 45 496-540 16-61 (235)
412 cd03250 ABCC_MRP_domain1 Domai 98.5 3.8E-07 8.3E-12 91.4 9.3 40 500-539 27-66 (204)
413 KOG0058 Peptide exporter, ABC 98.5 3.1E-07 6.8E-12 104.3 9.4 47 495-541 484-531 (716)
414 TIGR00972 3a0107s01c2 phosphat 98.5 2.9E-07 6.4E-12 95.1 8.5 41 500-540 23-68 (247)
415 PRK14259 phosphate ABC transpo 98.5 3.2E-07 6.9E-12 96.2 8.8 41 500-540 35-80 (269)
416 PRK10938 putative molybdenum t 98.5 2.1E-07 4.6E-12 105.8 8.1 44 496-539 20-64 (490)
417 COG4133 CcmA ABC-type transpor 98.5 5.7E-07 1.2E-11 86.7 9.6 40 500-539 24-63 (209)
418 PRK13642 cbiO cobalt transport 98.5 2.3E-07 5.1E-12 97.6 7.8 45 496-540 24-69 (277)
419 PRK10820 DNA-binding transcrip 98.5 1.2E-06 2.6E-11 100.2 14.1 196 477-690 204-417 (520)
420 cd03289 ABCC_CFTR2 The CFTR su 98.5 3.3E-07 7.2E-12 96.2 8.8 44 496-540 21-65 (275)
421 PRK10418 nikD nickel transport 98.5 3.1E-07 6.6E-12 95.4 8.5 45 496-540 20-69 (254)
422 PRK13541 cytochrome c biogenes 98.5 5.2E-07 1.1E-11 89.8 9.7 41 500-540 22-62 (195)
423 PRK10744 pstB phosphate transp 98.5 3.2E-07 7E-12 95.5 8.6 41 500-540 35-80 (260)
424 KOG0735 AAA+-type ATPase [Post 98.5 1.4E-06 3E-11 98.1 13.8 150 500-666 427-590 (952)
425 PRK14273 phosphate ABC transpo 98.5 3.6E-07 7.8E-12 94.8 8.8 41 500-540 29-74 (254)
426 PRK14253 phosphate ABC transpo 98.5 3.7E-07 8.1E-12 94.4 8.8 41 500-540 25-70 (249)
427 PRK15056 manganese/iron transp 98.5 4.2E-07 9.1E-12 95.4 9.3 45 496-540 24-69 (272)
428 KOG0480 DNA replication licens 98.5 3.4E-07 7.4E-12 101.7 8.7 185 470-665 338-545 (764)
429 PRK15093 antimicrobial peptide 98.5 3.4E-07 7.5E-12 98.7 8.7 147 495-644 23-232 (330)
430 PRK13539 cytochrome c biogenes 98.5 4.9E-07 1.1E-11 90.9 9.3 41 500-540 24-64 (207)
431 TIGR02868 CydC thiol reductant 98.5 3.3E-07 7.2E-12 105.3 9.1 65 495-560 351-416 (529)
432 TIGR02324 CP_lyasePhnL phospho 98.5 2.8E-07 6E-12 93.7 7.5 39 500-538 30-68 (224)
433 PRK14263 phosphate ABC transpo 98.5 4.1E-07 8.8E-12 94.9 8.9 41 500-540 30-75 (261)
434 PRK08699 DNA polymerase III su 98.5 4.9E-07 1.1E-11 96.9 9.7 137 504-659 21-182 (325)
435 PRK12377 putative replication 98.5 2.5E-07 5.5E-12 95.3 7.0 125 504-650 101-236 (248)
436 TIGR02329 propionate_PrpR prop 98.5 6.1E-07 1.3E-11 102.0 10.8 190 477-686 212-419 (526)
437 TIGR03796 NHPM_micro_ABC1 NHPM 98.5 3.1E-07 6.8E-12 109.2 8.9 66 495-561 495-562 (710)
438 COG1101 PhnK ABC-type uncharac 98.5 3.3E-07 7.2E-12 90.0 7.3 47 495-541 22-69 (263)
439 COG1129 MglA ABC-type sugar tr 98.5 1.2E-07 2.5E-12 105.3 4.6 60 482-541 11-71 (500)
440 PRK11174 cysteine/glutathione 98.5 2.8E-07 6.1E-12 107.3 8.1 45 495-540 366-411 (588)
441 KOG0057 Mitochondrial Fe/S clu 98.5 7E-07 1.5E-11 98.4 10.5 59 500-560 374-433 (591)
442 TIGR01257 rim_protein retinal- 98.5 2.4E-07 5.3E-12 118.2 7.8 146 494-644 945-1133(2272)
443 PRK14256 phosphate ABC transpo 98.5 5.7E-07 1.2E-11 93.2 9.2 41 500-540 26-71 (252)
444 PRK14272 phosphate ABC transpo 98.4 5E-07 1.1E-11 93.5 8.7 41 500-540 26-71 (252)
445 PRK14262 phosphate ABC transpo 98.4 6.5E-07 1.4E-11 92.7 9.4 41 500-540 25-70 (250)
446 PRK14238 phosphate transporter 98.4 5.5E-07 1.2E-11 94.5 8.9 46 495-540 40-91 (271)
447 PRK10762 D-ribose transporter 98.4 3.1E-07 6.8E-12 104.8 7.6 41 500-540 26-66 (501)
448 TIGR03375 type_I_sec_LssB type 98.4 3.8E-07 8.2E-12 108.3 8.5 65 495-560 481-547 (694)
449 PRK14248 phosphate ABC transpo 98.4 6E-07 1.3E-11 94.0 9.1 41 500-540 43-88 (268)
450 PRK14261 phosphate ABC transpo 98.4 6.3E-07 1.4E-11 92.9 9.1 45 496-540 23-73 (253)
451 PRK14237 phosphate transporter 98.4 5.8E-07 1.2E-11 94.1 8.8 46 495-540 36-87 (267)
452 PRK13549 xylose transporter AT 98.4 7.5E-08 1.6E-12 110.0 2.3 46 495-540 21-69 (506)
453 PRK14241 phosphate transporter 98.4 5.8E-07 1.3E-11 93.5 8.7 41 500-540 26-71 (258)
454 PRK14235 phosphate transporter 98.4 6.6E-07 1.4E-11 93.6 9.1 46 495-540 35-86 (267)
455 PRK14240 phosphate transporter 98.4 6.7E-07 1.5E-11 92.5 9.0 41 500-540 25-70 (250)
456 cd03288 ABCC_SUR2 The SUR doma 98.4 7.3E-07 1.6E-11 92.7 9.3 46 495-540 37-83 (257)
457 cd03236 ABC_RNaseL_inhibitor_d 98.4 6.6E-07 1.4E-11 93.0 8.8 41 496-536 18-58 (255)
458 PRK14270 phosphate ABC transpo 98.4 6.7E-07 1.5E-11 92.6 8.8 41 500-540 26-71 (251)
459 TIGR03797 NHPM_micro_ABC2 NHPM 98.4 4.3E-07 9.2E-12 107.7 8.2 46 495-540 469-515 (686)
460 PRK10261 glutathione transport 98.4 3.5E-07 7.7E-12 106.9 7.5 147 495-644 340-537 (623)
461 PRK11388 DNA-binding transcrip 98.4 1.7E-06 3.8E-11 101.6 13.2 193 477-690 325-534 (638)
462 PRK14243 phosphate transporter 98.4 8.1E-07 1.7E-11 92.8 9.3 41 500-540 32-77 (264)
463 PRK14275 phosphate ABC transpo 98.4 8.3E-07 1.8E-11 93.9 9.4 45 496-540 56-106 (286)
464 PRK09700 D-allose transporter 98.4 1E-07 2.2E-12 109.0 2.6 46 495-540 21-67 (510)
465 PRK14251 phosphate ABC transpo 98.4 7.7E-07 1.7E-11 92.1 8.9 41 500-540 26-71 (251)
466 PRK13545 tagH teichoic acids e 98.4 6.3E-07 1.4E-11 100.5 8.8 40 500-539 46-85 (549)
467 COG4618 ArpD ABC-type protease 98.4 5.9E-07 1.3E-11 98.1 8.1 61 500-561 358-419 (580)
468 PRK14268 phosphate ABC transpo 98.4 6.7E-07 1.5E-11 93.1 8.4 46 495-540 28-79 (258)
469 PRK09984 phosphonate/organopho 98.4 7.2E-07 1.6E-11 93.0 8.6 41 500-540 26-69 (262)
470 COG1123 ATPase components of v 98.4 5E-07 1.1E-11 101.0 7.7 47 494-540 306-353 (539)
471 COG0606 Predicted ATPase with 98.4 8.8E-08 1.9E-12 104.3 1.7 46 477-530 179-224 (490)
472 TIGR01193 bacteriocin_ABC ABC- 98.4 6.2E-07 1.3E-11 106.7 8.9 65 495-560 490-556 (708)
473 PRK10790 putative multidrug tr 98.4 5.6E-07 1.2E-11 104.8 8.4 46 495-540 357-403 (592)
474 PRK14260 phosphate ABC transpo 98.4 1E-06 2.2E-11 91.7 9.4 41 500-540 29-74 (259)
475 TIGR01978 sufC FeS assembly AT 98.4 6.9E-07 1.5E-11 91.9 8.0 41 500-540 22-64 (243)
476 PRK14246 phosphate ABC transpo 98.4 2.1E-07 4.6E-12 96.8 4.1 46 494-539 25-71 (257)
477 PRK14245 phosphate ABC transpo 98.4 9.8E-07 2.1E-11 91.3 9.0 41 500-540 25-70 (250)
478 TIGR01846 type_I_sec_HlyB type 98.4 6.7E-07 1.4E-11 106.2 8.7 45 496-540 474-519 (694)
479 PRK11300 livG leucine/isoleuci 98.4 8.7E-07 1.9E-11 91.9 8.6 41 500-540 27-67 (255)
480 PRK14265 phosphate ABC transpo 98.4 9.3E-07 2E-11 92.9 8.8 46 495-540 36-87 (274)
481 PRK10261 glutathione transport 98.4 6.9E-07 1.5E-11 104.5 8.5 46 495-540 32-78 (623)
482 PRK08116 hypothetical protein; 98.4 7.8E-07 1.7E-11 93.0 8.0 129 503-651 113-251 (268)
483 PRK11160 cysteine/glutathione 98.4 8.7E-07 1.9E-11 102.8 9.3 46 495-540 356-402 (574)
484 PRK14244 phosphate ABC transpo 98.4 1.4E-06 3E-11 90.3 9.8 41 500-540 27-72 (251)
485 COG0488 Uup ATPase components 98.4 1.7E-06 3.6E-11 98.2 11.2 62 477-538 319-382 (530)
486 TIGR01187 potA spermidine/putr 98.4 4.6E-07 1E-11 97.5 6.3 32 509-540 1-32 (325)
487 PRK10789 putative multidrug tr 98.4 8.6E-07 1.9E-11 102.8 8.9 46 495-540 331-377 (569)
488 KOG0059 Lipid exporter ABCA1 a 98.4 2.6E-07 5.7E-12 111.8 4.8 142 484-644 569-771 (885)
489 TIGR02857 CydD thiol reductant 98.4 6.3E-07 1.4E-11 103.0 7.7 46 495-540 338-384 (529)
490 PRK14257 phosphate ABC transpo 98.4 1E-06 2.2E-11 94.9 8.8 46 495-540 98-149 (329)
491 PRK14249 phosphate ABC transpo 98.4 1.1E-06 2.4E-11 90.9 8.7 41 500-540 26-71 (251)
492 PRK14236 phosphate transporter 98.4 1.3E-06 2.7E-11 91.8 9.1 45 496-540 42-92 (272)
493 PRK13657 cyclic beta-1,2-gluca 98.4 7.2E-07 1.6E-11 103.9 8.0 65 495-560 351-417 (588)
494 PRK10636 putative ABC transpor 98.4 2.2E-07 4.9E-12 108.8 3.8 44 495-538 328-372 (638)
495 PRK10982 galactose/methyl gala 98.4 6.7E-07 1.5E-11 101.8 7.5 41 500-540 20-60 (491)
496 PRK11288 araG L-arabinose tran 98.4 6.3E-07 1.4E-11 102.3 7.2 45 496-540 21-66 (501)
497 TIGR02204 MsbA_rel ABC transpo 98.4 9E-07 2E-11 102.8 8.6 46 495-540 356-402 (576)
498 COG0444 DppD ABC-type dipeptid 98.4 1.4E-06 3E-11 91.1 9.0 147 496-644 22-227 (316)
499 COG4604 CeuD ABC-type enteroch 98.3 7.4E-07 1.6E-11 86.4 6.4 60 482-541 4-64 (252)
500 PRK15134 microcin C ABC transp 98.3 1E-06 2.2E-11 101.3 8.8 45 496-540 26-76 (529)
No 1
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-93 Score=785.54 Aligned_cols=523 Identities=45% Similarity=0.711 Sum_probs=495.0
Q ss_pred eEEEEecCCCcccCCceeeEEeCCHhHHHHHHHHHhcCCCeEEEEEeeCCCCCCCCCcccccccccccccccccccccee
Q 005548 148 SVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLLKDDSLTDASTDTEKSVSDLKGKELFNRLHEVGT 227 (691)
Q Consensus 148 ~lPlfPL~~~VLfPg~~lpL~Ifepry~~~v~~~~~~~~~~~gv~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vGt 227 (691)
+||++||++.|+||++++||.|.+++++++++.++.+++.+++++++|+...++|.. +++|+|||
T Consensus 9 ~lpvlplr~~vvfP~m~~pl~vgr~~si~ale~a~~~~~k~i~l~~qk~~~~d~p~~---------------~dly~vGt 73 (782)
T COG0466 9 ELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDEPTE---------------DDLYEVGT 73 (782)
T ss_pred cceeEEecCceeCCCceeeEEcCChhHHHHHHHHHhCCCCEEEEEEecccccCCCCh---------------hhhhhcch
Confidence 899999999999999999999999999999999999877889999999877666643 79999999
Q ss_pred EEEEEEe-----cCeEEEEEeeeEEEEEEeeecCC-eEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHHHHhCccchhh
Q 005548 228 LAQISSI-----QGDQVILIGHRRLRITEMVSEDP-LTVKVDHLKDKPYDKDDDVIKATSFEVISTLRDVLKTSSLWRDH 301 (691)
Q Consensus 228 ~a~I~~~-----g~~~i~v~G~~R~rI~~~~~~~p-~~a~V~~l~d~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 301 (691)
+|+|.++ |+.+|+++|++|++|.++..+++ +.|+++.+++.+.+. ..+.+++.+.+.+.|++|.++++..+.+
T Consensus 74 ~a~I~q~~~lpdg~~kvlveg~~R~~I~~~~~~~~~~~a~~~~i~~~~~~~-~~~~~al~~~i~~~~~~~~~l~~~~~~e 152 (782)
T COG0466 74 LAKILQILKLPDGTVKVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPIDE-EREIEALVRSILSEFEEYAKLNKKIPPE 152 (782)
T ss_pred heeeeeeeeCCCCcEEEEEEeeeeEEEEeeccCCCceEEEEEecCCCcccc-hhHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 9999999 88999999999999999998766 699999999886542 5678999999999999999999866554
Q ss_pred HHHHhhhcCCCChhHHHHHHHHhCCCChhhHHHHHhccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Q 005548 302 VQTYTQHIGDFSFPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELVKKEMEISKIQESIAKAIEEKISGEQRRYL 381 (691)
Q Consensus 302 ~~~~~~~~~~~d~~~L~d~~a~~l~l~~~~Kq~LLe~~d~~~Rl~~l~~lL~~Eie~l~l~~ei~~~v~~~i~~~qre~~ 381 (691)
.......++ ++.+|+|++|++++++.++||++|++.|+.+|++.++.+|..|++.++++++|.++|+++|++.|||||
T Consensus 153 ~l~~~~~i~--~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREyy 230 (782)
T COG0466 153 ELQSLNSID--DPGKLADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYY 230 (782)
T ss_pred HHHHHhccc--chHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333566 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCccccchHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcccCCccchhhHhHHhhhcCCCCCCC
Q 005548 382 LNEQLKAIKKELGLETDDKTALSAKFRERIEQYKDKCPRHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTALPWGNY 461 (691)
Q Consensus 382 l~eql~~i~kel~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~~lp~~~~ 461 (691)
|+|||++||+|||... +...+++++++++++. .+|+++.+.+++|+.+++.|++++++++++|||++|+..+||.+.
T Consensus 231 L~EQlKaIqkELG~~~-d~~~e~~~~~~kie~~--~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~ 307 (782)
T COG0466 231 LREQLKAIQKELGEDD-DDKDEVEELREKIEKL--KLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGKR 307 (782)
T ss_pred HHHHHHHHHHHhCCCc-cchhHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhCCCccc
Confidence 9999999999999654 3348899999999975 899999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccc
Q 005548 462 SDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA 541 (691)
Q Consensus 462 ~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~ 541 (691)
+.+..|+.+++++|+++|||++++|+++.+++++..+...-+|.++||+||||+|||+|+++||+.+++.|++++++|+.
T Consensus 308 sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvr 387 (782)
T COG0466 308 SKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVR 387 (782)
T ss_pred cchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccc
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCce
Q 005548 542 DVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKV 621 (691)
Q Consensus 542 ~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~v 621 (691)
|.++++||+++|+|.+||++.+.+..+...|||++||||||++.++++|++++||++|||+||..|.|+|+++++|++++
T Consensus 388 DEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 388 DEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhcC
Q 005548 622 LFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRNR 691 (691)
Q Consensus 622 i~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~~ 691 (691)
+||+|+|..+.+|.+|+|||++|++++|+.+|+.+|+++||.+++.+.+|+++.++.++|++|..||++|
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~Y 537 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYY 537 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-94 Score=783.91 Aligned_cols=605 Identities=57% Similarity=0.875 Sum_probs=550.2
Q ss_pred hhhccccccccccccccccccCCCCCchhhHhhhhccccccCCCCcccceeeeeeCCCCCCCCCchhhhhhhcccCCCCC
Q 005548 50 LLSSTAATSCRTHALTATTFRTGAEPAPFFKALSQLTGLTTRSGRTVGYRRFFCSDSAGKGDEEGTVVEAEAKSESDGSD 129 (691)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (691)
...++++..+ |.+++ +.+++..+ .+.+.+||+|++ ...|+|.++|+.+..
T Consensus 4 ~~~~~~~~~~--~~~~~--~~~~~~~~----~~~~~~~~~~~~-~~~g~~~~~~~~~~~--------------------- 53 (906)
T KOG2004|consen 4 GRDPAAQKAH--HDFKA--RGSSPNKG----ELAGEAGKNRRS-TSLGGRASGSDLPST--------------------- 53 (906)
T ss_pred cccchhhhhc--ccchh--ccCCccch----hhhhhhcccccc-ccCCCcccCCCCccc---------------------
Confidence 3344444333 66673 45555554 999999999999 599999999887542
Q ss_pred CCCCCcccCCCCCCCCCCeEEEEecCCCcccCCceeeEEeCCHhHHHHHHHHHhcCCCeEEEEEeeCCCCCCCCCccc--
Q 005548 130 TKSSSAIVSTNPRLEDYLSVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLLKDDSLTDASTDTE-- 207 (691)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~lPlfPL~~~VLfPg~~lpL~Ifepry~~~v~~~~~~~~~~~gv~l~k~~~~~~~~~~~~-- 207 (691)
+|. +|+.+.|+++++||++|+++.|||||+++++.|.+|+.+++|++.+...++|+|+|+.||..+++.-..+.
T Consensus 54 ---~~~-~s~~~~~~~~~~l~~Lpi~~~pL~PGf~~~i~v~~~~~~~~i~~~l~~~qpyiG~fl~kdd~~~~~~~t~~~~ 129 (906)
T KOG2004|consen 54 ---SST-MSPVSVPDVPPRLPALPITRGPLFPGFYKRIEVKSPKVLALIREKLRRQQPYIGAFLLKDDSSGDSVITSINE 129 (906)
T ss_pred ---ccC-CCCCCCcccCcccceeeccCCCcCCCceeEEEecCHHHHHHHHHHHHhcCcccceeeeccCCCCCcceeeccc
Confidence 111 77778899999999999999999999999999999999999999999999999999999877654321111
Q ss_pred c-cccccccccc------ccccccceeEEEEEE----e-cCeEEEEEeeeEEEEEEeeecCC---eEEEEEecCCCCCCC
Q 005548 208 K-SVSDLKGKEL------FNRLHEVGTLAQISS----I-QGDQVILIGHRRLRITEMVSEDP---LTVKVDHLKDKPYDK 272 (691)
Q Consensus 208 ~-~~~~~~~~~~------~~~l~~vGt~a~I~~----~-g~~~i~v~G~~R~rI~~~~~~~p---~~a~V~~l~d~~~~~ 272 (691)
. ...-++++.. ....+.+++++.|.+ . +.+.+.+.|.+|++|.++..+.+ +.++|+.+++.+++.
T Consensus 130 vyi~~~~~~~~~~~~~l~~hRr~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~i~e~~~e~~~~vl~v~v~~v~~e~~~~ 209 (906)
T KOG2004|consen 130 VYILEVFPGKDKLRMVLYPHRRIRITELAPISEGKEDAEVEYSLLVTGLSRLNITEMKEEKEAEVLSVEVENVKDEPFKK 209 (906)
T ss_pred cceeeeecCCcchhhhhhhhhheeeeeeccccccccccccceeecccccccccchhhhccccCCceeeeeecccCCccCc
Confidence 1 1222333321 245566677777775 2 67889999999999999998744 689999999998887
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCccchhhHHHHhhhcCCCChhHHHHHHHHhCCCChhhHHHHHhccCHHHHHHHHHHHH
Q 005548 273 DDDVIKATSFEVISTLRDVLKTSSLWRDHVQTYTQHIGDFSFPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELV 352 (691)
Q Consensus 273 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~d~~a~~l~l~~~~Kq~LLe~~d~~~Rl~~l~~lL 352 (691)
+++ ++++..++...+++++..+++|.+.+..+.+.+...+|.+|+|+.|++...+..+.|++|++.|+.+|++..+.+|
T Consensus 210 ~~~-~ka~~~ei~~t~rdii~~n~l~r~~v~~~~~~~~~~~~~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~ll 288 (906)
T KOG2004|consen 210 DEE-IKALTSEILKTLRDIIAVNSLFREQVATLSQLIVEDNPIKLADFGAAISGAEFHELQEVLEETDIEKRLEKALELL 288 (906)
T ss_pred chH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccChhHHHHHHHHHhccCHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 665 9999999999999999999999999988888776669999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhhccCChhhHHHHHHHHHH
Q 005548 353 KKEMEISKIQESIAKAIEEKISGEQRRYLLNEQLKAIKKELGLETDDKTALSAKFRERIEQYKDKCPRHVLQVIEEELTK 432 (691)
Q Consensus 353 ~~Eie~l~l~~ei~~~v~~~i~~~qre~~l~eql~~i~kel~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~ 432 (691)
.+|++..+++++|.+.+++++++.+|+|+|+|||+.|++|||.+.|++.....++++++.. ..+|+++.+.+.+|+.+
T Consensus 289 kke~e~~klq~ki~k~vE~k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~--~~~P~~v~kv~~eEl~k 366 (906)
T KOG2004|consen 289 KKELELAKLQQKIGKEVEEKIKQDHREYLLREQLKAIKKELGIEKDDKDALVEKFRERIKS--LKMPDHVLKVIDEELTK 366 (906)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHhhCCCccchhhHHHHHHHHhhh--ccCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888899999999988 48999999999999999
Q ss_pred HhhcccCCccchhhHhHHhhhcCCCCCCCCchhhhHHHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcC
Q 005548 433 LQLLEASSSEFNVTRNYLDWLTALPWGNYSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGP 512 (691)
Q Consensus 433 l~~~~~~~~~~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GP 512 (691)
++.|+++++++++++||++|++.+||++.+.+++|+..++.+|+++|||++++|+++.+++++..+++.-+|+++||+||
T Consensus 367 L~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GP 446 (906)
T KOG2004|consen 367 LKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGP 446 (906)
T ss_pred HhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHH
Q 005548 513 PGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPA 592 (691)
Q Consensus 513 pGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~ 592 (691)
||+|||+++|+||+.+++.|.+++++|+.|+++++||+++|||.|||++.++++.....||+++|||+||+.+++++|++
T Consensus 447 PGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPa 526 (906)
T KOG2004|consen 447 PGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPA 526 (906)
T ss_pred CCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCC
Q 005548 593 SALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGI 672 (691)
Q Consensus 593 ~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l 672 (691)
++||++|||+||..|.|+|+++++|+++++||||+|..+.||++|+|||++|.+++|..+|+++|+++||.+.+++.||+
T Consensus 527 sALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl 606 (906)
T KOG2004|consen 527 SALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGL 606 (906)
T ss_pred HHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeCHHHHHHhhhcC
Q 005548 673 KPEQKITAGKQGFGIFRNR 691 (691)
Q Consensus 673 ~~~~l~is~~~i~~ii~~~ 691 (691)
+++++.+++.++..+|.+|
T Consensus 607 ~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 607 KPEQVKISDDALLALIERY 625 (906)
T ss_pred CHHhcCccHHHHHHHHHHH
Confidence 9999999999999999864
No 3
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=100.00 E-value=1.5e-80 Score=725.01 Aligned_cols=521 Identities=39% Similarity=0.627 Sum_probs=477.6
Q ss_pred CCeEEEEecCCCcccCCceeeEEeCCHhHHHHHHHHHhcCCCeEEEEEeeCCCCCCCCCccccccccccccccccccccc
Q 005548 146 YLSVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLLKDDSLTDASTDTEKSVSDLKGKELFNRLHEV 225 (691)
Q Consensus 146 ~~~lPlfPL~~~VLfPg~~lpL~Ifepry~~~v~~~~~~~~~~~gv~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v 225 (691)
..++|+|||+++|||||+++||+||||||++||++|++++ ..||+++++++..++++. +++|+|
T Consensus 8 ~~~LPLfPLr~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~-~~~gvv~~k~~~~~~p~~---------------~dLy~V 71 (784)
T PRK10787 8 RIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD-KKIMLVAQKEASTDEPGV---------------NDLFTV 71 (784)
T ss_pred CceEEEEECCCceeCCCceeeeecCCHHHHHHHHHHHhcC-CEEEEEEecCCCCCCCCc---------------ccccCc
Confidence 4489999999999999999999999999999999999874 578899998876555532 789999
Q ss_pred eeEEEEEEe-----cCeEEEEEeeeEEEEEEeeecCCe-EEEEEecCCCCCCCChHHHHHHHHHHHHHHHHHHHhCccch
Q 005548 226 GTLAQISSI-----QGDQVILIGHRRLRITEMVSEDPL-TVKVDHLKDKPYDKDDDVIKATSFEVISTLRDVLKTSSLWR 299 (691)
Q Consensus 226 Gt~a~I~~~-----g~~~i~v~G~~R~rI~~~~~~~p~-~a~V~~l~d~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 299 (691)
||+|+|+++ |+++|+|+|++||+|.++.+++|| .|+|+++++++. +..+.+++...+.+.++++..++...+
T Consensus 72 Gtla~I~~~~~l~DG~~~Ilv~Gl~RfrI~~~~~~~py~~A~Ve~l~~~~~--~~~e~~al~~~ll~~~~~~~~l~~~~~ 149 (784)
T PRK10787 72 GTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTI--DEREQEVLVRTAISQFEGYIKLNKKIP 149 (784)
T ss_pred cEEEEEEEeeECCCCeEEEEEEEEEEEEEEEEEcCCCCEEEEEEEecCCCC--CchHHHHHHHHHHHHHHHHHHhcccCC
Confidence 999999998 899999999999999999887785 899999988642 334567888889999999998887765
Q ss_pred hhHHHHhhhcCCCChhHHHHHHHHhCCCChhhHHHHHhccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHH
Q 005548 300 DHVQTYTQHIGDFSFPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELVKKEMEISKIQESIAKAIEEKISGEQRR 379 (691)
Q Consensus 300 ~~~~~~~~~~~~~d~~~L~d~~a~~l~l~~~~Kq~LLe~~d~~~Rl~~l~~lL~~Eie~l~l~~ei~~~v~~~i~~~qre 379 (691)
.+.......++ ||.||+|+||++++++.++||+||++.|+.+|+++++.+|.+|++.++++++|.++++++++++||+
T Consensus 150 ~e~~~~~~~~d--dp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~v~~~~~k~q~e 227 (784)
T PRK10787 150 PEVLTSLNSID--DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQRE 227 (784)
T ss_pred HHHHhhhhccc--cHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55443334455 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcccCCccchhhHhHHhhhcCCCCC
Q 005548 380 YLLNEQLKAIKKELGLETDDKTALSAKFRERIEQYKDKCPRHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTALPWG 459 (691)
Q Consensus 380 ~~l~eql~~i~kel~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~~lp~~ 459 (691)
|+|+|||+.|++|||. .++...+.++++++++.. .+|+++.+.+.+|+.+++.|.+.+++++++++|++|++.+||+
T Consensus 228 ~~lreq~~~i~~elg~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~ 304 (784)
T PRK10787 228 YYLNEQMKAIQKELGE-MDDAPDENEALKRKIDAA--KMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWN 304 (784)
T ss_pred hcchhhhhhhcccccC-CCcchhHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCC
Confidence 9999999999999995 445567889999999876 7999999999999999999999999999999999999999999
Q ss_pred CCCchhhhHHHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 460 NYSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
+.+.+.+|+.+++.+|+++|||++++|+++.++++........+|.++||+||||+||||++++||+.++.+++++++++
T Consensus 305 ~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~ 384 (784)
T PRK10787 305 ARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGG 384 (784)
T ss_pred CCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 99999999999999999999999999999999998765544457889999999999999999999999999999999999
Q ss_pred cchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCC
Q 005548 540 LADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLS 619 (691)
Q Consensus 540 ~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~ 619 (691)
..+..++.|+++.|+|.+++.+.+.+..+...+||++|||+|++..+.++++.++|++++|+.++..|.|+|.+++++++
T Consensus 385 ~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 385 VRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred CCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCC
Confidence 99999999999999999999999988888888899999999999988888899999999999999999999999999999
Q ss_pred ceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 620 KVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 620 ~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
+++||+|+|.. .+++||++||.+|.|.+|+.+++.+|+++|+.+++.+.+++....+.++++++.+|++.
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~ 534 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRY 534 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHh
Confidence 99999999998 59999999999999999999999999999999888888899888999999999999864
No 4
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=100.00 E-value=1.6e-77 Score=706.45 Aligned_cols=521 Identities=53% Similarity=0.849 Sum_probs=475.3
Q ss_pred EEEecCCCcccCCceeeEEeCCHhHHHHHHHHHhcCCCeEEEEEeeCCCCCCCCCccccccccccccccccccccceeEE
Q 005548 150 LALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLLKDDSLTDASTDTEKSVSDLKGKELFNRLHEVGTLA 229 (691)
Q Consensus 150 PlfPL~~~VLfPg~~lpL~Ifepry~~~v~~~~~~~~~~~gv~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vGt~a 229 (691)
|+||||++|||||+++||+||||||++||++|++++..+++++++++.+.++|+. +++|+|||+|
T Consensus 1 Pl~PLr~~VLfPg~~lpL~Ife~r~i~mV~~al~~~~~~~~vv~~k~~~~~~p~~---------------~~ly~VGt~a 65 (775)
T TIGR00763 1 PLLPLRRRPLFPGMIKPIDVGREKSIKLIKEALRLKQPYLGLFLQKDDDNEEPEE---------------DDIYSVGVVA 65 (775)
T ss_pred CeEcCCCCccCCCcceeEecCCHHHHHHHHHHHhcCCcEEEEEEecCcccCCCCc---------------ccccCCceEE
Confidence 8999999999999999999999999999999999877776688888876655532 7899999999
Q ss_pred EEEEe--------cCeEEEEEeeeEEEEEEeeecCCe-EEEEEecCCCCCCCChHHHHHHHHHHHHHHHHHHHhCcc--c
Q 005548 230 QISSI--------QGDQVILIGHRRLRITEMVSEDPL-TVKVDHLKDKPYDKDDDVIKATSFEVISTLRDVLKTSSL--W 298 (691)
Q Consensus 230 ~I~~~--------g~~~i~v~G~~R~rI~~~~~~~p~-~a~V~~l~d~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~ 298 (691)
+|+++ |++.|+|+|.+||+|.++.+++|| .|+|+++++++...+..+..++...+.+.++++..+++. .
T Consensus 66 ~I~~~~~~~d~~dG~~~Ilv~G~~R~rI~~~~~~~p~~~A~V~~l~~~~~~~~~~e~~al~~~l~~~~~el~~l~~l~~~ 145 (775)
T TIGR00763 66 QILEMLPLPSSGTATYKVVVEGLRRIRIKELSDKGGYLVVRVDNLKEEPFDKDDEEIKALTREIKETFRELISLSKLFRE 145 (775)
T ss_pred EEEEeccCCCCCCCeEEEEEEEEEEEEEEEEecCCCcEEEEEEEecCcCCCCCcHHHHHHHHHHHHHHHHHHHhCccccC
Confidence 99997 469999999999999999998885 999999998755445567889999999999999988873 3
Q ss_pred hhhHHHHhhhcCCCChhHHHHHHHHhCCCC-hhhHHHHHhccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHH
Q 005548 299 RDHVQTYTQHIGDFSFPRLADFGAAISGAN-KLQCQQVLEELDVYKRLKLTLELVKKEMEISKIQESIAKAIEEKISGEQ 377 (691)
Q Consensus 299 ~~~~~~~~~~~~~~d~~~L~d~~a~~l~l~-~~~Kq~LLe~~d~~~Rl~~l~~lL~~Eie~l~l~~ei~~~v~~~i~~~q 377 (691)
+.........++ ||.||+|+||++++++ .++||+||++.|+.+|+++++++|.+|++.++++++|.+++++++++.|
T Consensus 146 ~~e~~~~~~~~~--dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~q 223 (775)
T TIGR00763 146 QPALLSALEDID--EPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQ 223 (775)
T ss_pred CHHHHHHHhccC--CHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222223344 9999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcccCCccchhhHhHHhhhcCCC
Q 005548 378 RRYLLNEQLKAIKKELGLETDDKTALSAKFRERIEQYKDKCPRHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTALP 457 (691)
Q Consensus 378 re~~l~eql~~i~kel~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~~lp 457 (691)
|+|+|+|||++|++|||.. ++...++++++++++.. .+|+++.+.+.+|+.+++.|.+.+.+++++++|++|++++|
T Consensus 224 r~~~Lreqlk~i~~eLg~~-~~~~~~~~~~~~k~~~~--~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip 300 (775)
T TIGR00763 224 REYYLREQLKAIKKELGIE-KDDKDELEKLKEKLEEL--KLPEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLP 300 (775)
T ss_pred HHHHHHHHHHHHHHhhCCC-CCchhHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCC
Confidence 9999999999999999953 45556789999999887 69999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhHHHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEe
Q 005548 458 WGNYSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSV 537 (691)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~ 537 (691)
|.+.+.+.+++..++..|+++|+|++++++.+.++++........++.++||+||||||||+++++||+.++.+++++++
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 301 WGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeC
Confidence 99988889999999999999999999999999999887766555677899999999999999999999999999999999
Q ss_pred CccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhcccccc
Q 005548 538 GGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPID 617 (691)
Q Consensus 538 ~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~ 617 (691)
++..+..++.++.+.|+|..++.+.+.+..+...++|+||||+|++.++.++++.++|++.||+.++..|.|++.+..++
T Consensus 381 ~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 381 GGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred CCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceec
Confidence 99888889999999999999999999888888788899999999999888888999999999999989999999888889
Q ss_pred CCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 618 LSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 618 ~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
+++++||+|+|..+.++++|++||.+|.|++|+.+++.+|+++++.++....+|+....+.++++++.+|++.
T Consensus 461 ~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~ 533 (775)
T TIGR00763 461 LSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKY 533 (775)
T ss_pred cCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888888999988999999999999874
No 5
>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]
Probab=99.96 E-value=3e-28 Score=236.91 Aligned_cols=194 Identities=22% Similarity=0.313 Sum_probs=152.3
Q ss_pred CCCCCeEEEEecCCCcccCCceeeEEeCCHhHHHHHHHHHhcCCCeEEEEEeeCCC-CCCCCCccccccccccccccccc
Q 005548 143 LEDYLSVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLLKDDS-LTDASTDTEKSVSDLKGKELFNR 221 (691)
Q Consensus 143 ~~~~~~lPlfPL~~~VLfPg~~lpL~Ifepry~~~v~~~~~~~~~~~gv~l~k~~~-~~~~~~~~~~~~~~~~~~~~~~~ 221 (691)
+..+.+||+|||+++|||||+.+||+||||||++||++|+++ ++.||++....+. ..++. ...
T Consensus 6 ~~~p~~LplFPL~~~vLlPg~~LpL~IFEpRY~~Mv~~~~~~-~r~fGvv~i~~~~~~~~~~---------------~~~ 69 (221)
T COG2802 6 DDLPLELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAE-GRRFGVVLIDRGREVGGGL---------------PPE 69 (221)
T ss_pred CCccceeeccccccccccCCCCCchhhccHHHHHHHHHHHhc-CCceeEEEecccccccCCC---------------cch
Confidence 344669999999999999999999999999999999999996 4568888886544 22221 268
Q ss_pred cccceeEEEEEEe-----cCeEEEEEeeeEEEEEEeee-cCCe-EEEEEecCCCCCCCC-hHHHHHHH-HHHHHHHHHHH
Q 005548 222 LHEVGTLAQISSI-----QGDQVILIGHRRLRITEMVS-EDPL-TVKVDHLKDKPYDKD-DDVIKATS-FEVISTLRDVL 292 (691)
Q Consensus 222 l~~vGt~a~I~~~-----g~~~i~v~G~~R~rI~~~~~-~~p~-~a~V~~l~d~~~~~~-~~~~~~l~-~~l~~~l~~~~ 292 (691)
++.|||+|+|+++ |++.|.++|.+||||.++.. ++|| .+.++|++|++..+. ..+++... ..+...++.+.
T Consensus 70 ls~VGcla~I~~~~~~~DGr~~I~~~G~~RFRv~~~~~~~~pyr~~~~~~~~D~~~~~~~a~evdr~~~~~l~~~~r~~~ 149 (221)
T COG2802 70 LSDVGCLARITEFEELGDGRYLILVRGGQRFRVLEELADDDPYRRARVPFWPDLPSDPDGAEEVDRRLDALLMRAARAYL 149 (221)
T ss_pred hhccceeEEEeEeeEcCCCcEEEEEEeEEEEEEEEEecccCcceeeccccCCCCccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999999998 7887 889999999877655 33333322 23444555555
Q ss_pred HhCccchhhHHHHhhhcCCCChhHHHHHHHHhCCCChhhHHHHHhccCHHHHHHHHHHHHHHHHH
Q 005548 293 KTSSLWRDHVQTYTQHIGDFSFPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELVKKEME 357 (691)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~d~~~L~d~~a~~l~l~~~~Kq~LLe~~d~~~Rl~~l~~lL~~Eie 357 (691)
.......++ ...+..++.|+++.++..+|+++.+||++++..|+..|++.++.+++...+
T Consensus 150 ~~~~l~~d~-----~~~~~~~~~~l~n~L~~llp~~~~~k~~ll~a~d~~~r~~~L~~~~e~l~a 209 (221)
T COG2802 150 QRLELLADW-----ESYERASNADLANRLYMLLPFDPAEKQALLEAPDLPTRAERLIRLLEQLLA 209 (221)
T ss_pred hhcchhhhh-----cccccccHHHHHHHHHHhCCCChhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 433322222 111112899999999999999999999999999999999999888876554
No 6
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.6e-25 Score=251.57 Aligned_cols=238 Identities=19% Similarity=0.285 Sum_probs=198.6
Q ss_pred ccchhhHhHHhhhcCCCCCCC-CchhhhHHHHhhhhhccccchHHHHHHHHHHHHhcccc---CCCCCceEEEEcCCCCc
Q 005548 441 SEFNVTRNYLDWLTALPWGNY-SDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR---GISQGKIICLSGPPGVG 516 (691)
Q Consensus 441 ~~~~~~~~~l~~~~~lp~~~~-~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~---~~~~g~~vlL~GPpGtG 516 (691)
.....+...+..|+++|..+. ..+...+.+++..|.+.++||+++...+.+.+...+.. ...+-..++|+||+|||
T Consensus 454 v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVG 533 (786)
T COG0542 454 VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVG 533 (786)
T ss_pred cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCccc
Confidence 445567778888999999875 34566778899999999999999999999999877655 22333469999999999
Q ss_pred HHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhcccCcccccccchHHHHHHHhcccCC--EEEehhhhhhcccCC
Q 005548 517 KTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHRRTYIGAMPGKMVQCLKNVGTANP--LVLIDEIDKLGRGHA 588 (691)
Q Consensus 517 KTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~--VlllDEidkl~~~~~ 588 (691)
||.||++||..+. ..+.+++|+++.+ ++.+.|.+++||||..| ..++.+.+.+| |++||||+|+ +
T Consensus 534 KTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG---G~LTEaVRr~PySViLlDEIEKA----H 606 (786)
T COG0542 534 KTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG---GQLTEAVRRKPYSVILLDEIEKA----H 606 (786)
T ss_pred HHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc---cchhHhhhcCCCeEEEechhhhc----C
Confidence 9999999999997 6789999988765 77899999999999987 55777777776 9999999999 4
Q ss_pred CCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC----------------------------CCChhhcCe
Q 005548 589 GDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE----------------------------NIPNPLLDR 640 (691)
Q Consensus 589 ~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~----------------------------~l~~aLldR 640 (691)
+++.+.||++||. +++.|.. +..++++|++||||||... .++|+|++|
T Consensus 607 pdV~nilLQVlDd---GrLTD~~-Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNR 682 (786)
T COG0542 607 PDVFNLLLQVLDD---GRLTDGQ-GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNR 682 (786)
T ss_pred HHHHHHHHHHhcC---CeeecCC-CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhh
Confidence 5899999999997 4555554 6788999999999999641 267899999
Q ss_pred EE-EEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 641 ME-VIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 641 ~~-iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
++ +|.|.+++.+...+|+...+.....+.. -....+.+++++.++|+..
T Consensus 683 id~II~F~~L~~~~l~~Iv~~~L~~l~~~L~-~~~i~l~~s~~a~~~l~~~ 732 (786)
T COG0542 683 IDEIIPFNPLSKEVLERIVDLQLNRLAKRLA-ERGITLELSDEAKDFLAEK 732 (786)
T ss_pred cccEEeccCCCHHHHHHHHHHHHHHHHHHHH-hCCceEEECHHHHHHHHHh
Confidence 98 8999999999999999999988776544 2346699999999998753
No 7
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=99.93 E-value=9.7e-25 Score=218.12 Aligned_cols=191 Identities=31% Similarity=0.473 Sum_probs=130.5
Q ss_pred eEEEEecCCCcccCCceeeEEeCCHhHHHHHHHHHhcCCCeEEEEEe-eCCCCCCCCCccccccccccccccccccccce
Q 005548 148 SVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLL-KDDSLTDASTDTEKSVSDLKGKELFNRLHEVG 226 (691)
Q Consensus 148 ~lPlfPL~~~VLfPg~~lpL~Ifepry~~~v~~~~~~~~~~~gv~l~-k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vG 226 (691)
+||+||+++.|+|||+++||+|++|+|++||++++.++.++||+++. .+....+ + +..+++|++|
T Consensus 1 ~lPv~pl~~~vlfPg~~~~i~i~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~-------------~-~~~~~~~~~G 66 (205)
T PF02190_consen 1 ELPVFPLRNQVLFPGQTLPIHIFEPRYIALLKRALDNNNPYFGIFLVKSNKDDSD-------------E-PSIDDLYSVG 66 (205)
T ss_dssp EEEEEEESSS---TTBEEEEEE-SHHHHHHHHHHHTTTSE-EEEEEE-EBSSTSS-------------S-S-GGGB-SEE
T ss_pred CEEEEEeCCcccCCCeeEEEEECCHHHHHHHHHHHhcCCCceeEEeecccCCccc-------------C-Ccccccccce
Confidence 58999999999999999999999999999999999886656888888 3221110 1 1238899999
Q ss_pred eEEEEEEe-----cCeEEEEEeeeEEEEEEe---eecCCe-EEEEEecCCC-CCCC--ChHHHHHHHHHHHHHHHHHHHh
Q 005548 227 TLAQISSI-----QGDQVILIGHRRLRITEM---VSEDPL-TVKVDHLKDK-PYDK--DDDVIKATSFEVISTLRDVLKT 294 (691)
Q Consensus 227 t~a~I~~~-----g~~~i~v~G~~R~rI~~~---~~~~p~-~a~V~~l~d~-~~~~--~~~~~~~l~~~l~~~l~~~~~~ 294 (691)
|+|+|+++ |.+.|+++|.+||+|.++ ..++|| .|+|+.+++. +.+. ...+++++..++.+.++++...
T Consensus 67 ~~~~I~~~~~~~dg~~~v~~~g~~R~ki~~~~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (205)
T PF02190_consen 67 TLARIIRVEELPDGTYKVLVQGLQRFKILKINNETQEDPYLVAEVEPLEDVEPPESDELDEEIKALLRELIKKIKEAYEN 146 (205)
T ss_dssp EEEEEEEEEESTTS-EEEEEEEEEEEEEEEEEE--ECSSCEEEEEEEE-----GCGHHHHHHHHHHHHHHHHHHH---HH
T ss_pred EEEEEEEEEecCCCCEEEEEEEEEEEEEEEEecccccCCceEEEEEEecccCccchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998 789999999999999999 457776 9999999872 2221 1245666666666666631121
Q ss_pred Cccc-hhhHHHHhhhcCCCChhHHHHHHHHhCCCChhhHHHHHhccCHHHHHHHHHHHHHH
Q 005548 295 SSLW-RDHVQTYTQHIGDFSFPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELVKK 354 (691)
Q Consensus 295 ~~~~-~~~~~~~~~~~~~~d~~~L~d~~a~~l~l~~~~Kq~LLe~~d~~~Rl~~l~~lL~~ 354 (691)
...+ +........... ++..++|++|+.++++.++||+||++.|+.+|++.++++|++
T Consensus 147 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~l~~~~~ek~~lL~~~~~~~Rl~~l~~~L~~ 205 (205)
T PF02190_consen 147 LKELLPWDLLLKINNPD--NPPELADFVASLLPLSPEEKQELLETDDLKERLKLLIELLKK 205 (205)
T ss_dssp HCCC-CHHHHHHTTTHH--HHHHHHHHHHHHS---HHHHHHHHC--SHHHHHHHHHHHHH-
T ss_pred hhcccchhhhhhhhccC--CHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 2222 222222222223 788899999999999999999999999999999999999864
No 8
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.91 E-value=9.9e-23 Score=242.47 Aligned_cols=357 Identities=21% Similarity=0.243 Sum_probs=254.9
Q ss_pred ChhHHHHHHHHhCCCChhhHHHHHhccCHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHhhHHHHHHH-HHHHH
Q 005548 313 SFPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELVKKEMEISKIQESIA-----KAIEEKISGEQRRYL-LNEQL 386 (691)
Q Consensus 313 d~~~L~d~~a~~l~l~~~~Kq~LLe~~d~~~Rl~~l~~lL~~Eie~l~l~~ei~-----~~v~~~i~~~qre~~-l~eql 386 (691)
....|+|.+|+.+.++...+|+.| .|++..+..|..|++.++.++++. +++++++++.+++++ +++++
T Consensus 389 kAi~LiD~aaa~~rl~~~~kp~~L------~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~ 462 (857)
T PRK10865 389 KAIDLIDEAASSIRMQIDSKPEEL------DRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEW 462 (857)
T ss_pred HHHHHHHHHhcccccccccChHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567799999999999999999888 678888888988888887776554 567778888899887 89999
Q ss_pred HHHHHHcCccccchHHHHHHHHHHHHHhhcc--------CChhhHHHHHHHHHHHhhc-------ccCCccchhhHhHHh
Q 005548 387 KAIKKELGLETDDKTALSAKFRERIEQYKDK--------CPRHVLQVIEEELTKLQLL-------EASSSEFNVTRNYLD 451 (691)
Q Consensus 387 ~~i~kel~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~el~~l~~~-------~~~~~~~~~~~~~l~ 451 (691)
+.++++++. ..+...++.+++++++..... +.......+.+++..++.. .........+...+.
T Consensus 463 k~~k~el~~-~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~ 541 (857)
T PRK10865 463 KAEKASLSG-TQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLA 541 (857)
T ss_pred HHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHH
Confidence 999988872 233333444444444333211 1111122223333322211 113355667788899
Q ss_pred hhcCCCCCCC-CchhhhHHHHhhhhhccccchHHHHHHHHHHHHhccccCC--CCC-ceEEEEcCCCCcHHHHHHHHHHH
Q 005548 452 WLTALPWGNY-SDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLRGI--SQG-KIICLSGPPGVGKTSIGRSIARA 527 (691)
Q Consensus 452 ~~~~lp~~~~-~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~--~~g-~~vlL~GPpGtGKTtLakaLA~~ 527 (691)
.|+++|..+. ..+...+..++..+.+.++|++.+.+.+...+........ .++ ..++|+||+|||||++|++||..
T Consensus 542 ~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 542 RWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred HHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 9999999875 4456678889999999999999999999888875433211 122 36899999999999999999998
Q ss_pred hc---CCeEEEEeCccch---hhhhhcccCcccccccchHHHHHHHhcc--cCCEEEehhhhhhcccCCCCHHHHHHhhc
Q 005548 528 LN---RKFFRFSVGGLAD---VAEIKGHRRTYIGAMPGKMVQCLKNVGT--ANPLVLIDEIDKLGRGHAGDPASALLELL 599 (691)
Q Consensus 528 l~---~~~~~i~~~~~~~---~~~l~g~~~~~vG~~~~~i~~~l~~~~~--~~~VlllDEidkl~~~~~~~~~~~LL~~L 599 (691)
+. .++..++++.+.+ ...+.|...+|+|+..+.. +..... ...|++|||++++.. +..+.|+++|
T Consensus 622 l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~---l~~~v~~~p~~vLllDEieka~~----~v~~~Ll~il 694 (857)
T PRK10865 622 MFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY---LTEAVRRRPYSVILLDEVEKAHP----DVFNILLQVL 694 (857)
T ss_pred hhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHH---HHHHHHhCCCCeEEEeehhhCCH----HHHHHHHHHH
Confidence 84 3567777765533 4456787888998876532 222222 234999999999854 5788999998
Q ss_pred CHHHHHHHHHhhccccccCCceEEEEEeCCC-------------------------CCCChhhcCeE-EEEEEcCCCHHH
Q 005548 600 DPEQNANFLDHYLDVPIDLSKVLFVCTANVV-------------------------ENIPNPLLDRM-EVIAIAGYITDE 653 (691)
Q Consensus 600 D~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~-------------------------~~l~~aLldR~-~iI~~~~~~~~e 653 (691)
+.. .+.+. .+..+++++++||+|||.. ..+.++|++|+ .++.|.+++.++
T Consensus 695 e~g---~l~d~-~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~ed 770 (857)
T PRK10865 695 DDG---RLTDG-QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQH 770 (857)
T ss_pred hhC---ceecC-CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHH
Confidence 762 33332 2455678899999999973 12567899999 578999999999
Q ss_pred HHHHHHHHHhHHhH--HhcCCCCCceeeCHHHHHHhhhc
Q 005548 654 KMHIARDYLEKTTR--EACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 654 ~~~I~~~~l~~~~~--~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
...|++.++..... ...++ .+.++++++.+|+++
T Consensus 771 l~~Iv~~~L~~l~~rl~~~gi---~l~is~~al~~L~~~ 806 (857)
T PRK10865 771 IASIAQIQLQRLYKRLEERGY---EIHISDEALKLLSEN 806 (857)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---cCcCCHHHHHHHHHc
Confidence 99999999987543 23343 478999999998763
No 9
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.86 E-value=9.3e-20 Score=216.49 Aligned_cols=242 Identities=21% Similarity=0.272 Sum_probs=184.4
Q ss_pred CCccchhhHhHHhhhcCCCCCCC-CchhhhHHHHhhhhhccccchHHHHHHHHHHHHhccccCC--CCC-ceEEEEcCCC
Q 005548 439 SSSEFNVTRNYLDWLTALPWGNY-SDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLRGI--SQG-KIICLSGPPG 514 (691)
Q Consensus 439 ~~~~~~~~~~~l~~~~~lp~~~~-~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~--~~g-~~vlL~GPpG 514 (691)
.......+...+..|+++|+.+. ..+...+..++..|.+.++|++++.+.+.+.+........ .++ ..++|+||+|
T Consensus 527 ~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~G 606 (852)
T TIGR03345 527 PEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSG 606 (852)
T ss_pred ceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCC
Confidence 34556778888999999999875 3455568888999999999999999999998876433311 222 2489999999
Q ss_pred CcHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhcccCcccccccchH-HHHHHHhcccCCEEEehhhhhhcccC
Q 005548 515 VGKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHRRTYIGAMPGKM-VQCLKNVGTANPLVLIDEIDKLGRGH 587 (691)
Q Consensus 515 tGKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~~~~vG~~~~~i-~~~l~~~~~~~~VlllDEidkl~~~~ 587 (691)
||||.+|++||..+. ..+..++++.+.+ ...+.|.+.+|+|+..+.. ...+.. ....|++|||++++.
T Consensus 607 vGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~--~p~svvllDEieka~--- 681 (852)
T TIGR03345 607 VGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR--KPYSVVLLDEVEKAH--- 681 (852)
T ss_pred CCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh--CCCcEEEEechhhcC---
Confidence 999999999999983 4577888776543 5567888899999976543 223222 233499999999885
Q ss_pred CCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC-----------------------------CCChhhc
Q 005548 588 AGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE-----------------------------NIPNPLL 638 (691)
Q Consensus 588 ~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~-----------------------------~l~~aLl 638 (691)
.++.+.|++++|. ..+.|. .+..+++++++||+|||... .+.++|+
T Consensus 682 -~~v~~~Llq~ld~---g~l~d~-~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfl 756 (852)
T TIGR03345 682 -PDVLELFYQVFDK---GVMEDG-EGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFL 756 (852)
T ss_pred -HHHHHHHHHHhhc---ceeecC-CCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHh
Confidence 4678899999986 333443 45677899999999999531 1678899
Q ss_pred CeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 639 DRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 639 dR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
+|+.+|.|.+++.++..+|+...+.....+.....+..+.++++++++|+..
T Consensus 757 nRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~ 808 (852)
T TIGR03345 757 GRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVAR 808 (852)
T ss_pred cceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHH
Confidence 9999999999999999999999998754432111135689999999998763
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.1e-21 Score=202.81 Aligned_cols=181 Identities=26% Similarity=0.391 Sum_probs=151.9
Q ss_pred hHHHHhhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 467 DVIRAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 467 ~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
...+.+.+..++|.|+++.++.+.+.+.++..+ ++.+++.++||||||||||.||||+|+..+.+|.++..++
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 344455667789999999999999999988665 8999999999999999999999999999999999987665
Q ss_pred cchhhhhhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhccc-----CCC--CHHHHHHhhcCHHHHHHHHHhh
Q 005548 540 LADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRG-----HAG--DPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 540 ~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~-----~~~--~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
+. .+|+|..+.-....|..+....| |+||||||.+... .++ +++..+++.|.. +|++
T Consensus 221 lV---------qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q------lDGF 285 (406)
T COG1222 221 LV---------QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ------LDGF 285 (406)
T ss_pred HH---------HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh------ccCC
Confidence 43 48999999888899999887766 9999999998731 122 267777777654 5555
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHhHHh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEKTT 666 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~~~~ 666 (691)
.. .+++-||++||+++.+||||++ ||+ .|+|+.|+.+.+.+|++.|..+..
T Consensus 286 D~----~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~ 339 (406)
T COG1222 286 DP----RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN 339 (406)
T ss_pred CC----CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc
Confidence 32 4689999999999999999998 997 599999999999999999988654
No 11
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.84 E-value=3.2e-19 Score=212.81 Aligned_cols=239 Identities=20% Similarity=0.280 Sum_probs=180.1
Q ss_pred CccchhhHhHHhhhcCCCCCCCCc-hhhhHHHHhhhhhccccchHHHHHHHHHHHHhccccC--CCC-CceEEEEcCCCC
Q 005548 440 SSEFNVTRNYLDWLTALPWGNYSD-ENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLRG--ISQ-GKIICLSGPPGV 515 (691)
Q Consensus 440 ~~~~~~~~~~l~~~~~lp~~~~~~-~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~--~~~-g~~vlL~GPpGt 515 (691)
......+...+..|+++|..+... +...+..++..|.+.++||+++++.+...+....... ..+ -..++|+||+||
T Consensus 471 ~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~Gv 550 (821)
T CHL00095 471 VVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGV 550 (821)
T ss_pred ccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCC
Confidence 345566778889999999987544 4455778899999999999999999998887554431 122 234899999999
Q ss_pred cHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhcccCcccccccchHHHHHHHhcccC--CEEEehhhhhhcccC
Q 005548 516 GKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHRRTYIGAMPGKMVQCLKNVGTAN--PLVLIDEIDKLGRGH 587 (691)
Q Consensus 516 GKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~--~VlllDEidkl~~~~ 587 (691)
|||++|++||..+. .++.+++++.+.+ ...+.|.+.+|+|+..+.. +......+ .|++|||+|++.+
T Consensus 551 GKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~---l~~~~~~~p~~VvllDeieka~~-- 625 (821)
T CHL00095 551 GKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQ---LTEAVRKKPYTVVLFDEIEKAHP-- 625 (821)
T ss_pred cHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccch---HHHHHHhCCCeEEEECChhhCCH--
Confidence 99999999999984 5677787766533 5566777888999876542 22222223 4999999999854
Q ss_pred CCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCC-----------------------------------
Q 005548 588 AGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVEN----------------------------------- 632 (691)
Q Consensus 588 ~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~----------------------------------- 632 (691)
++.+.|++.||. ..+.|.. +..+++++++||+|||....
T Consensus 626 --~v~~~Llq~le~---g~~~d~~-g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 699 (821)
T CHL00095 626 --DIFNLLLQILDD---GRLTDSK-GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELK 699 (821)
T ss_pred --HHHHHHHHHhcc---CceecCC-CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHH
Confidence 678999999986 3333432 55668899999999996411
Q ss_pred --CChhhcCeE-EEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 633 --IPNPLLDRM-EVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 633 --l~~aLldR~-~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
+.|+|++|+ .++.|.+++.++..+|+...+.+...+. .-....+.++++++++|+.+
T Consensus 700 ~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl-~~~~i~l~~~~~~~~~La~~ 759 (821)
T CHL00095 700 QFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRL-NEQGIQLEVTERIKTLLIEE 759 (821)
T ss_pred HhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH-HHCCcEEEECHHHHHHHHHh
Confidence 346799999 6899999999999999999998764432 12245699999999998764
No 12
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.83 E-value=2.4e-19 Score=211.56 Aligned_cols=262 Identities=19% Similarity=0.299 Sum_probs=196.3
Q ss_pred cCChhhHHHHHHHHHHHhhcc-----cCCccchhhHhHHhhhcCCCCCCCC-chhhhHHHHhhhhhccccchHHHHHHHH
Q 005548 417 KCPRHVLQVIEEELTKLQLLE-----ASSSEFNVTRNYLDWLTALPWGNYS-DENFDVIRAQKILDEDHYGLNDVKERIL 490 (691)
Q Consensus 417 ~~~~~~~~~~~~el~~l~~~~-----~~~~~~~~~~~~l~~~~~lp~~~~~-~~~~~~~~~~~~l~~~i~Gl~~vk~~i~ 490 (691)
.+|+.+++.+.+-..+.. +. ........+.+++.+++++||.+.+ .+...+..++..|.+.++||+++++.+.
T Consensus 389 ~~P~kai~lld~a~a~~~-~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~ 467 (731)
T TIGR02639 389 FLPDKAIDVIDEAGASFR-LRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLV 467 (731)
T ss_pred cCCHHHHHHHHHhhhhhh-cCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHH
Confidence 457777766654333222 21 1234455678899999999998654 4556788899999999999999999998
Q ss_pred HHHHhccccCC---CCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch---hhhhhcccCcccccccchH-HH
Q 005548 491 EFIAVGKLRGI---SQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD---VAEIKGHRRTYIGAMPGKM-VQ 563 (691)
Q Consensus 491 ~~l~l~~~~~~---~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~---~~~l~g~~~~~vG~~~~~i-~~ 563 (691)
..+........ .+...++|+||+|||||++|++||..++.++.+++++++.+ ...+.|...+|+|+..+.. ..
T Consensus 468 ~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~ 547 (731)
T TIGR02639 468 SSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTE 547 (731)
T ss_pred HHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHH
Confidence 88876543311 22335899999999999999999999999999999877644 5667788888999876543 22
Q ss_pred HHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC------------
Q 005548 564 CLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE------------ 631 (691)
Q Consensus 564 ~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~------------ 631 (691)
.+.. ....|++|||++++. .++.+.|+++||. ..+.|. .+..+++++++||+|||...
T Consensus 548 ~~~~--~p~~VvllDEieka~----~~~~~~Ll~~ld~---g~~~d~-~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~ 617 (731)
T TIGR02639 548 AVRK--HPHCVLLLDEIEKAH----PDIYNILLQVMDY---ATLTDN-NGRKADFRNVILIMTSNAGASEMSKPPIGFGS 617 (731)
T ss_pred HHHh--CCCeEEEEechhhcC----HHHHHHHHHhhcc---CeeecC-CCcccCCCCCEEEECCCcchhhhhhccCCcch
Confidence 2221 234599999999995 4688999999996 334454 35667889999999999742
Q ss_pred -------------CCChhhcCeEE-EEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 632 -------------NIPNPLLDRME-VIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 632 -------------~l~~aLldR~~-iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
.++|+|++|++ ++.|.+++.++..+|++..+.+...... .....+.++++++++|+.+
T Consensus 618 ~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~-~~~~~l~i~~~a~~~La~~ 689 (731)
T TIGR02639 618 ENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLN-EKNIKLELTDDAKKYLAEK 689 (731)
T ss_pred hhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHH-hCCCeEEeCHHHHHHHHHh
Confidence 25788999996 7899999999999999999986544322 1234699999999999863
No 13
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.82 E-value=6.5e-19 Score=205.67 Aligned_cols=262 Identities=18% Similarity=0.281 Sum_probs=192.0
Q ss_pred cCChhhHHHHHHHHHHHhhcc----cCCccchhhHhHHhhhcCCCCCCCC-chhhhHHHHhhhhhccccchHHHHHHHHH
Q 005548 417 KCPRHVLQVIEEELTKLQLLE----ASSSEFNVTRNYLDWLTALPWGNYS-DENFDVIRAQKILDEDHYGLNDVKERILE 491 (691)
Q Consensus 417 ~~~~~~~~~~~~el~~l~~~~----~~~~~~~~~~~~l~~~~~lp~~~~~-~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~ 491 (691)
.+|+.+++.+++-..+..... ........+...+..|+++|..... .+...+..++..|.+.++|++++++.+.+
T Consensus 393 ~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~ 472 (758)
T PRK11034 393 HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTE 472 (758)
T ss_pred cChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHH
Confidence 456666666555443322111 1112335577888899999998653 35556778889999999999999999999
Q ss_pred HHHhcccc--C-CCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch---hhhhhcccCcccccccchH-HHH
Q 005548 492 FIAVGKLR--G-ISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD---VAEIKGHRRTYIGAMPGKM-VQC 564 (691)
Q Consensus 492 ~l~l~~~~--~-~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~---~~~l~g~~~~~vG~~~~~i-~~~ 564 (691)
.+...... . ..+-..++|+||||||||++|+++|..++.++.+++++.+.+ ...+.|.+.+|+|+..+.. ...
T Consensus 473 ~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~ 552 (758)
T PRK11034 473 AIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA 552 (758)
T ss_pred HHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHH
Confidence 88754332 1 122346999999999999999999999999999999877643 6678888888999765532 222
Q ss_pred HHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC--------------
Q 005548 565 LKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV-------------- 630 (691)
Q Consensus 565 l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~-------------- 630 (691)
+.. ...+|+||||++++.+ ++.+.|++.||. ..+.|. .+..+++++++||+|||..
T Consensus 553 v~~--~p~sVlllDEieka~~----~v~~~LLq~ld~---G~ltd~-~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~ 622 (758)
T PRK11034 553 VIK--HPHAVLLLDEIEKAHP----DVFNLLLQVMDN---GTLTDN-NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQ 622 (758)
T ss_pred HHh--CCCcEEEeccHhhhhH----HHHHHHHHHHhc---CeeecC-CCceecCCCcEEEEeCCcCHHHHhhcccCcccc
Confidence 221 1335999999999964 678999999986 233333 2445678999999999943
Q ss_pred -----------CCCChhhcCeEE-EEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 631 -----------ENIPNPLLDRME-VIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 631 -----------~~l~~aLldR~~-iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..+.|+|++|++ ++.|.+++.++..+|+..++.+..... .-.+..+.++++++++|+.
T Consensus 623 ~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l-~~~~i~l~~~~~~~~~l~~ 692 (758)
T PRK11034 623 DNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQL-DQKGVSLEVSQEARDWLAE 692 (758)
T ss_pred hhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCceECHHHHHHHHH
Confidence 126789999997 789999999999999999988765432 1233569999999999875
No 14
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.82 E-value=3.3e-20 Score=202.37 Aligned_cols=260 Identities=23% Similarity=0.325 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcccCCccchhhHhHHhhhcC-----
Q 005548 381 LLNEQLKAIKKELGLETDDKTALSAKFRERIEQYKDKCPRHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTA----- 455 (691)
Q Consensus 381 ~l~eql~~i~kel~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~~----- 455 (691)
.+++|+++++++++ +...++.+++++++.. ..++.....+.+++.+...+...+.+.+...++.+|+..
T Consensus 10 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (364)
T TIGR01242 10 KLEDEKRSLEKEKI----RLERELERLRSEIERL--RSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKP 83 (364)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH--hCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCCC
Confidence 45667777777664 3445667777777666 556666666666666666666677777777777766432
Q ss_pred ----------------CCCCCCC-chhhhHHHHhhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEc
Q 005548 456 ----------------LPWGNYS-DENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSG 511 (691)
Q Consensus 456 ----------------lp~~~~~-~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~G 511 (691)
+||.+.. ...+.+...+.+.+++++|+++.++.+.+++.+.... ++.++.+++|+|
T Consensus 84 g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~G 163 (364)
T TIGR01242 84 GARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYG 163 (364)
T ss_pred CCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEEC
Confidence 5665422 2455566677788899999999999999988764332 456778899999
Q ss_pred CCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCCC-
Q 005548 512 PPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAG- 589 (691)
Q Consensus 512 PpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~- 589 (691)
|||||||++++++|+.++.++..+...++. ..|+|.....+...+..+....| |+||||+|.+......
T Consensus 164 ppGtGKT~lakaia~~l~~~~~~v~~~~l~---------~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~ 234 (364)
T TIGR01242 164 PPGTGKTLLAKAVAHETNATFIRVVGSELV---------RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDS 234 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEecchHHHH---------HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccC
Confidence 999999999999999999988877543321 24566665556666666554444 9999999998643211
Q ss_pred ----C--HHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHH
Q 005548 590 ----D--PASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARD 660 (691)
Q Consensus 590 ----~--~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~ 660 (691)
+ ....+.+.+. .+.+.. ..+++.||+|||.++.+++++++ ||+ .|.|+.|+.+++.+|++.
T Consensus 235 ~~~~~~~~~~~l~~ll~---------~ld~~~-~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~ 304 (364)
T TIGR01242 235 GTSGDREVQRTLMQLLA---------ELDGFD-PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKI 304 (364)
T ss_pred CCCccHHHHHHHHHHHH---------HhhCCC-CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHH
Confidence 1 1122222221 111111 23589999999999999999986 776 589999999999999998
Q ss_pred HHhHH
Q 005548 661 YLEKT 665 (691)
Q Consensus 661 ~l~~~ 665 (691)
++.+.
T Consensus 305 ~~~~~ 309 (364)
T TIGR01242 305 HTRKM 309 (364)
T ss_pred HHhcC
Confidence 87643
No 15
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.4e-20 Score=203.62 Aligned_cols=174 Identities=25% Similarity=0.395 Sum_probs=145.1
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchh
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADV 543 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~ 543 (691)
..++-|++|.|++++|..+.+.+.++.-. ++.+++.|+|+||||||||++||++|.+.+.+|..|...++.
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~-- 505 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF-- 505 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH--
Confidence 55677789999999999999888765332 678999999999999999999999999999999887755432
Q ss_pred hhhhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCCC-------CHHHHHHhhcCHHHHHHHHHhhcccc
Q 005548 544 AEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAG-------DPASALLELLDPEQNANFLDHYLDVP 615 (691)
Q Consensus 544 ~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~-------~~~~~LL~~LD~~~~~~~~d~~~~~~ 615 (691)
.+|+|..+..+...|..+....| |+|+||||.+.....+ .+++.||.-||...
T Consensus 506 -------sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e------------ 566 (693)
T KOG0730|consen 506 -------SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE------------ 566 (693)
T ss_pred -------HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc------------
Confidence 47999999999999999887655 9999999998854321 25677777776421
Q ss_pred ccCCceEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHhHHh
Q 005548 616 IDLSKVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEKTT 666 (691)
Q Consensus 616 ~~~~~vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~~~~ 666 (691)
..++++||++||+++.||+|+++ |++ +|+++.|+.+.+.+|++.++++..
T Consensus 567 -~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 567 -ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred -ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC
Confidence 23689999999999999999999 997 689999999999999999988653
No 16
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.2e-19 Score=174.20 Aligned_cols=281 Identities=23% Similarity=0.329 Sum_probs=182.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhhc--------cCChh
Q 005548 350 ELVKKEMEISKIQESIAKAIEEKISGEQRRYLLNEQLKAIKKELGLETDDKTALSAKFRERIEQYKD--------KCPRH 421 (691)
Q Consensus 350 ~lL~~Eie~l~l~~ei~~~v~~~i~~~qre~~l~eql~~i~kel~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~ 421 (691)
+.|+++++.++++++.-+.-...++++-. --+|+++.|+.- +-.+.++.+.++.... .+--.
T Consensus 35 k~le~~le~l~vqe~yik~e~~~lkre~~--~aqeevkriqsv--------plvigqfle~vdqnt~ivgsttgsny~vr 104 (408)
T KOG0727|consen 35 KKLERELELLEVQEDYIKDEQRNLKRELL--HAQEEVKRIQSV--------PLVIGQFLEAVDQNTAIVGSTTGSNYYVR 104 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcc--------chHHHHHHHhhhccCceeecccCCceEEe
Confidence 35788999999988866554443333221 123566666641 1233444444443321 11123
Q ss_pred hHHHHHHHHHHHhhcccCCccchhhHhHHhhhcCCCCCC-CCchhhhHHHHhhhhhccccchHHHHHHHHHHHHhcccc-
Q 005548 422 VLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTALPWGN-YSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR- 499 (691)
Q Consensus 422 ~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~~lp~~~-~~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~- 499 (691)
+...+.+|+-+-. .+.....-.|.+ +--+|... ++.....-.+-+.+...++.|++-.|+.+.+.+.++...
T Consensus 105 ilstidrellkps----~svalhrhsnal--vdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~ 178 (408)
T KOG0727|consen 105 ILSTIDRELLKPS----ASVALHRHSNAL--VDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHA 178 (408)
T ss_pred ehhhhhHHHcCCc----cchhhhhcccce--eeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHH
Confidence 4455666654211 111111111111 11233321 122222222334455679999999999999999876443
Q ss_pred ------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCC
Q 005548 500 ------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP 573 (691)
Q Consensus 500 ------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~ 573 (691)
++.+++.++|+||||||||+|+|++|+.....|+++..+++. .+|.|..|......|..+..+.|
T Consensus 179 ~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv---------qkylgegprmvrdvfrlakenap 249 (408)
T KOG0727|consen 179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV---------QKYLGEGPRMVRDVFRLAKENAP 249 (408)
T ss_pred HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH---------HHHhccCcHHHHHHHHHHhccCC
Confidence 789999999999999999999999999999999988765543 47999999988888888877666
Q ss_pred -EEEehhhhhhcc-c------CCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcC--eEEE
Q 005548 574 -LVLIDEIDKLGR-G------HAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLD--RMEV 643 (691)
Q Consensus 574 -VlllDEidkl~~-~------~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~i 643 (691)
|+||||+|.+.. . ...++...|++.|.. +|++.. ..++-+|++||+.+.++++|++ |++-
T Consensus 250 siifideidaiatkrfdaqtgadrevqril~ellnq------mdgfdq----~~nvkvimatnradtldpallrpgrldr 319 (408)
T KOG0727|consen 250 SIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQ------MDGFDQ----TTNVKVIMATNRADTLDPALLRPGRLDR 319 (408)
T ss_pred cEEEeehhhhHhhhhccccccccHHHHHHHHHHHHh------ccCcCc----ccceEEEEecCcccccCHhhcCCccccc
Confidence 999999998762 1 112356666665543 344422 2588999999999999999997 7764
Q ss_pred -EEEcCCCHHHHHHHHHHHHhHH
Q 005548 644 -IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 644 -I~~~~~~~~e~~~I~~~~l~~~ 665 (691)
|+|+.++..++.-++.....+.
T Consensus 320 kiefplpdrrqkrlvf~titskm 342 (408)
T KOG0727|consen 320 KIEFPLPDRRQKRLVFSTITSKM 342 (408)
T ss_pred cccCCCCchhhhhhhHHhhhhcc
Confidence 9999999998887777766544
No 17
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.80 E-value=1e-17 Score=200.48 Aligned_cols=238 Identities=18% Similarity=0.261 Sum_probs=178.8
Q ss_pred CccchhhHhHHhhhcCCCCCCC-CchhhhHHHHhhhhhccccchHHHHHHHHHHHHhcccc---CCCCCceEEEEcCCCC
Q 005548 440 SSEFNVTRNYLDWLTALPWGNY-SDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR---GISQGKIICLSGPPGV 515 (691)
Q Consensus 440 ~~~~~~~~~~l~~~~~lp~~~~-~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~---~~~~g~~vlL~GPpGt 515 (691)
......+...+..|+++|..+. ..+...+..++..|.+.++|++.+.+.+...+...... ...+...++|+||+||
T Consensus 527 ~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~Gv 606 (852)
T TIGR03346 527 EVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGV 606 (852)
T ss_pred CcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCC
Confidence 3556778888899999999865 34556677888899999999999999999888754332 1223456999999999
Q ss_pred cHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhcccCcccccccchH-HHHHHHhcccCCEEEehhhhhhcccCC
Q 005548 516 GKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHRRTYIGAMPGKM-VQCLKNVGTANPLVLIDEIDKLGRGHA 588 (691)
Q Consensus 516 GKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~~~~vG~~~~~i-~~~l~~~~~~~~VlllDEidkl~~~~~ 588 (691)
|||++|++||..+. .++..++++.+.+ ...+.|.+.+|+|+..+.. ...+.. ....|++|||++++.
T Consensus 607 GKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~--~p~~vlllDeieka~---- 680 (852)
T TIGR03346 607 GKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR--KPYSVVLFDEVEKAH---- 680 (852)
T ss_pred CHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHc--CCCcEEEEeccccCC----
Confidence 99999999999884 4577777766533 4566788888999875432 222221 123499999999985
Q ss_pred CCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC-------------------------CCChhhcCeEE-
Q 005548 589 GDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE-------------------------NIPNPLLDRME- 642 (691)
Q Consensus 589 ~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~-------------------------~l~~aLldR~~- 642 (691)
.++.+.|+++||. ..+.|. .+..+++++++||+|||... .+.++|++|++
T Consensus 681 ~~v~~~Ll~~l~~---g~l~d~-~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~ 756 (852)
T TIGR03346 681 PDVFNVLLQVLDD---GRLTDG-QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDE 756 (852)
T ss_pred HHHHHHHHHHHhc---CceecC-CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCe
Confidence 4678999999986 333443 35566789999999999832 15678999995
Q ss_pred EEEEcCCCHHHHHHHHHHHHhHHhHH--hcCCCCCceeeCHHHHHHhhhc
Q 005548 643 VIAIAGYITDEKMHIARDYLEKTTRE--ACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 643 iI~~~~~~~~e~~~I~~~~l~~~~~~--~~~l~~~~l~is~~~i~~ii~~ 690 (691)
++.|.+++.++...|+..++...... ..+ ..+.++++++.+|+++
T Consensus 757 IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~---~~l~i~~~a~~~L~~~ 803 (852)
T TIGR03346 757 IVVFHPLGREQIARIVEIQLGRLRKRLAERK---ITLELSDAALDFLAEA 803 (852)
T ss_pred EEecCCcCHHHHHHHHHHHHHHHHHHHHHCC---CeecCCHHHHHHHHHh
Confidence 78999999999999999998754432 333 3488999999999875
No 18
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.8e-19 Score=196.01 Aligned_cols=174 Identities=22% Similarity=0.329 Sum_probs=142.8
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 468 VIRAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 468 ~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
|...+.+-|.+|.|+++++..+..++..+.-+ ++..+..+||+||||||||.||||+|++.+.+|..|...++
T Consensus 502 F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPEL 581 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPEL 581 (802)
T ss_pred ceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHH
Confidence 44456677889999999999998888765332 67788899999999999999999999999999987764433
Q ss_pred chhhhhhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCCC-------CHHHHHHhhcCHHHHHHHHHhhc
Q 005548 541 ADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAG-------DPASALLELLDPEQNANFLDHYL 612 (691)
Q Consensus 541 ~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~-------~~~~~LL~~LD~~~~~~~~d~~~ 612 (691)
- .+|||+.+..+.+.|+.+....| |+|+||+|.+.+..+. .+++.||.-||...
T Consensus 582 l---------NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~--------- 643 (802)
T KOG0733|consen 582 L---------NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE--------- 643 (802)
T ss_pred H---------HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc---------
Confidence 2 48999999999999999987665 9999999999854332 25777777777521
Q ss_pred cccccCCceEEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHh
Q 005548 613 DVPIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLE 663 (691)
Q Consensus 613 ~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~ 663 (691)
+..++.+|++||+++.+|+|+++ |++- +.+..|+.+++.+|++.+.+
T Consensus 644 ----~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 644 ----ERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred ----cccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 23689999999999999999998 9985 67777889999999999887
No 19
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.77 E-value=8.5e-19 Score=173.62 Aligned_cols=176 Identities=23% Similarity=0.318 Sum_probs=136.5
Q ss_pred HHHhhhhhccccchHHHHHHHH---HHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhh
Q 005548 469 IRAQKILDEDHYGLNDVKERIL---EFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAE 545 (691)
Q Consensus 469 ~~~~~~l~~~i~Gl~~vk~~i~---~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~ 545 (691)
.....+..++++|++++|+... +++.-+..-+.=.+++++|+||||||||++||++|+..+.++..+....
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~------ 186 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE------ 186 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHH------
Confidence 3345566789999999988753 3443221112225688999999999999999999999999998876543
Q ss_pred hhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhccc-----CCCC---HHHHHHhhcCHHHHHHHHHhhccccc
Q 005548 546 IKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRG-----HAGD---PASALLELLDPEQNANFLDHYLDVPI 616 (691)
Q Consensus 546 l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~-----~~~~---~~~~LL~~LD~~~~~~~~d~~~~~~~ 616 (691)
+.| .|||....++...+..+....| |+||||+|.+.-+ ..+| .+++||..||.. .
T Consensus 187 liG---ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi------------~- 250 (368)
T COG1223 187 LIG---EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGI------------K- 250 (368)
T ss_pred HHH---HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCc------------c-
Confidence 333 5788888888888887776554 9999999987722 2344 578888888752 1
Q ss_pred cCCceEEEEEeCCCCCCChhhcCeEEE-EEEcCCCHHHHHHHHHHHHhHHh
Q 005548 617 DLSKVLFVCTANVVENIPNPLLDRMEV-IAIAGYITDEKMHIARDYLEKTT 666 (691)
Q Consensus 617 ~~~~vi~I~TsN~~~~l~~aLldR~~i-I~~~~~~~~e~~~I~~~~l~~~~ 666 (691)
...+++.|++||.++.+|+++.+||+- |+|.-|+.+++.+|++.|..+..
T Consensus 251 eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P 301 (368)
T COG1223 251 ENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP 301 (368)
T ss_pred cCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC
Confidence 236899999999999999999999975 99999999999999999987643
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.77 E-value=9.7e-19 Score=191.88 Aligned_cols=181 Identities=23% Similarity=0.384 Sum_probs=132.7
Q ss_pred hhHHHHhhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 005548 466 FDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVG 538 (691)
Q Consensus 466 ~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~ 538 (691)
+.+.+.....+++++|+++.++.+.+.+.+.... ++.++.+++|+||||||||++|+++|..++.++..+.++
T Consensus 120 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 120 MEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred eeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 3444455677789999999999999988664332 567788899999999999999999999999998888765
Q ss_pred ccchhhhhhcccCcccccccchHHHHHHHhcccC-CEEEehhhhhhcccCCC-------CHHHHHHhhcCHHHHHHHHHh
Q 005548 539 GLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTAN-PLVLIDEIDKLGRGHAG-------DPASALLELLDPEQNANFLDH 610 (691)
Q Consensus 539 ~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~-~VlllDEidkl~~~~~~-------~~~~~LL~~LD~~~~~~~~d~ 610 (691)
.+. ..|+|.....+...+..+.... .|+||||+|.+...... .....+.+.+.. .+
T Consensus 200 ~l~---------~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~------ld- 263 (389)
T PRK03992 200 ELV---------QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE------MD- 263 (389)
T ss_pred HHh---------HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHh------cc-
Confidence 432 3567776666666666665544 49999999998632211 112223222211 11
Q ss_pred hccccccCCceEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHhHH
Q 005548 611 YLDVPIDLSKVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 611 ~~~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~~~ 665 (691)
+.. ..+++.||+|||.++.+++++++ ||+ .|.|+.|+.+++.+|++.++.+.
T Consensus 264 --~~~-~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~ 318 (389)
T PRK03992 264 --GFD-PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM 318 (389)
T ss_pred --ccC-CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC
Confidence 111 23578999999999999999986 886 58999999999999999988653
No 21
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.1e-18 Score=189.00 Aligned_cols=174 Identities=26% Similarity=0.423 Sum_probs=134.4
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhcccc------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhh
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLR------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVA 544 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~ 544 (691)
.+++-|+||.|++++|..+.+.+.++... +..+..+++|+||||||||.+|||+|.++...|..|...++-
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL--- 742 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL--- 742 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH---
Confidence 34667889999999999999999885332 566778899999999999999999999999888776543322
Q ss_pred hhhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcc--cCCCC-------HHHHHHhhcCHHHHHHHHHhhccc
Q 005548 545 EIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGR--GHAGD-------PASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 545 ~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~--~~~~~-------~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
..|||..+++.+..|.++....| |+|+||+|.+.+ +.++| +++.||.-||.... -
T Consensus 743 ------NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~---------~ 807 (953)
T KOG0736|consen 743 ------NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSD---------S 807 (953)
T ss_pred ------HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccC---------C
Confidence 47999999999999999987655 999999999883 33333 56677776664211 0
Q ss_pred cccCCceEEEEEeCCCCCCChhhcC--eEEEEEEcCCCH--HHHHHHHHHHHhH
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLD--RMEVIAIAGYIT--DEKMHIARDYLEK 664 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLld--R~~iI~~~~~~~--~e~~~I~~~~l~~ 664 (691)
+...+.||++||+++.+|++|++ ||+-+.+-+++. +.+..+++..-++
T Consensus 808 --~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk 859 (953)
T KOG0736|consen 808 --SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK 859 (953)
T ss_pred --CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH
Confidence 24578999999999999999998 998755444443 4456666665444
No 22
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-17 Score=182.27 Aligned_cols=172 Identities=24% Similarity=0.314 Sum_probs=139.4
Q ss_pred hccccchHHHHHHHHHHHHhcccc------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcc
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLR------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGH 549 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~ 549 (691)
.+++.|+++....+.+.+..-... ++.+++.++|+||||||||+||++||++++.+++.|...++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv-------- 260 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV-------- 260 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhh--------
Confidence 458999999988888877652221 788999999999999999999999999999999999876543
Q ss_pred cCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCCC-------CHHHHHHhhcCHHHHHHHHHhhccccccCCce
Q 005548 550 RRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAG-------DPASALLELLDPEQNANFLDHYLDVPIDLSKV 621 (691)
Q Consensus 550 ~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~-------~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~v 621 (691)
.++.|+.+.++...|..+....| |+||||||.+.+.... ..+..|+..||...+. ......+
T Consensus 261 -SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~---------~~~g~~V 330 (802)
T KOG0733|consen 261 -SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE---------KTKGDPV 330 (802)
T ss_pred -cccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc---------ccCCCCe
Confidence 47788999999999988887655 9999999998853321 2567777777763322 1123579
Q ss_pred EEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHhHH
Q 005548 622 LFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 622 i~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~~~ 665 (691)
++|++||+++.++++|.+ ||+- |.+.-|+..++.+|++..+...
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l 377 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGL 377 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC
Confidence 999999999999999987 8975 9999999999999999988754
No 23
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-17 Score=179.61 Aligned_cols=179 Identities=23% Similarity=0.358 Sum_probs=139.6
Q ss_pred hhHHHHhhhhhccccchHHHHHHHHHHHHhcccc------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 466 FDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 466 ~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
.+-.....+-++++-|.+++|+.+.+.+.+-+-. +-+-++.++|+||||||||.|||++|++.+.+|+....++
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 3444455677889999999999998877654322 3344567999999999999999999999999999877666
Q ss_pred cchhhhhhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCCCC-------HHHHHHhhcCHHHHHHHHHhh
Q 005548 540 LADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAGD-------PASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 540 ~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~~-------~~~~LL~~LD~~~~~~~~d~~ 611 (691)
+.+ -|||....++...|..+....| ||||||||.+....... ..+.||.-|| ++
T Consensus 373 FdE---------m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmD---------GF 434 (752)
T KOG0734|consen 373 FDE---------MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMD---------GF 434 (752)
T ss_pred hhh---------hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhc---------Cc
Confidence 543 5788888889888888877665 99999999988433222 2333443333 33
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHhHHh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKTT 666 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~~~~ 666 (691)
.+ .++++||++||.++.+|+||.+ ||+. |.++.|+..-+.+|+..|+.+..
T Consensus 435 ~q----NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~ 488 (752)
T KOG0734|consen 435 KQ----NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP 488 (752)
T ss_pred Cc----CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC
Confidence 22 3699999999999999999997 9986 89999999999999999998754
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.72 E-value=3.7e-17 Score=182.53 Aligned_cols=169 Identities=25% Similarity=0.345 Sum_probs=126.0
Q ss_pred ccccchHHHHHHHHHHHHhc----cccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCc
Q 005548 477 EDHYGLNDVKERILEFIAVG----KLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRT 552 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~----~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~ 552 (691)
+++.|++.+|+.+.+..... ...+++.+++++|+||||||||++|++||+.++.+++.++++.+. .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~---------~~ 298 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF---------GG 298 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc---------cc
Confidence 48899999998887643221 112567888999999999999999999999999999999876432 36
Q ss_pred ccccccchHHHHHHHhcccC-CEEEehhhhhhcccC--CCC--HHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEe
Q 005548 553 YIGAMPGKMVQCLKNVGTAN-PLVLIDEIDKLGRGH--AGD--PASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTA 627 (691)
Q Consensus 553 ~vG~~~~~i~~~l~~~~~~~-~VlllDEidkl~~~~--~~~--~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~Ts 627 (691)
|+|....++...+..+.... +|+||||+|++.... .++ ..+.++. .++..+.+ ..++++||+||
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~--------~lL~~l~~---~~~~V~vIaTT 367 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLA--------TFITWLSE---KKSPVFVVATA 367 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHH--------HHHHHHhc---CCCceEEEEec
Confidence 88888888888887766544 499999999886421 111 1221111 11111111 13578999999
Q ss_pred CCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHhHH
Q 005548 628 NVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 628 N~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~~~ 665 (691)
|.++.+|+++++ ||+ ++.++.|+.+++.+|++.++.+.
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 999999999987 996 58999999999999999999874
No 25
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.8e-17 Score=172.55 Aligned_cols=174 Identities=24% Similarity=0.300 Sum_probs=136.2
Q ss_pred hhhhccccchHHHHHHHHHHHHhcccc-----C-CCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhh
Q 005548 473 KILDEDHYGLNDVKERILEFIAVGKLR-----G-ISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEI 546 (691)
Q Consensus 473 ~~l~~~i~Gl~~vk~~i~~~l~l~~~~-----~-~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l 546 (691)
.+-+++|.|+.++|+-+.+++.++..- + ..+=+.++++||||||||.||||+|.+++-+|+.|+-+.+.
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt----- 282 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT----- 282 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh-----
Confidence 455789999999999999999886442 2 33456799999999999999999999999999888766543
Q ss_pred hcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccC--CC------CHHHHHHhhcCHHHHHHHHHhhcccccc
Q 005548 547 KGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGH--AG------DPASALLELLDPEQNANFLDHYLDVPID 617 (691)
Q Consensus 547 ~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~--~~------~~~~~LL~~LD~~~~~~~~d~~~~~~~~ 617 (691)
.+|-|..+.-+...|.++....| +|||||||.++... ++ .+.+.||..||..+... +
T Consensus 283 ----SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~----------e 348 (491)
T KOG0738|consen 283 ----SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTL----------E 348 (491)
T ss_pred ----hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccc----------c
Confidence 46777777767777777777666 99999999998322 21 25667777777633221 1
Q ss_pred C-CceEEEEEeCCCCCCChhhcCeEEE-EEEcCCCHHHHHHHHHHHHhHH
Q 005548 618 L-SKVLFVCTANVVENIPNPLLDRMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 618 ~-~~vi~I~TsN~~~~l~~aLldR~~i-I~~~~~~~~e~~~I~~~~l~~~ 665 (691)
. +.++|+++||.+.+||+||++||+- |.++-|+.+.+..+++..|...
T Consensus 349 ~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~ 398 (491)
T KOG0738|consen 349 NSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSV 398 (491)
T ss_pred cceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc
Confidence 1 2367778999999999999999985 8999999999999998877643
No 26
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-16 Score=157.54 Aligned_cols=178 Identities=26% Similarity=0.412 Sum_probs=139.2
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD 542 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~ 542 (691)
+.+.+..+-+.|++...+.+.+.+.++--. ++.+++.++|+||||+|||.||+++|......|.+++.+++.
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv- 218 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV- 218 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH-
Confidence 344445567889999999999988876332 788999999999999999999999999999999887755432
Q ss_pred hhhhhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccC----CC---CHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 543 VAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGH----AG---DPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 543 ~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~----~~---~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
.+|+|.........|-++....| |+|+||||.+.... .+ ++...+|+.|.. +|++..
T Consensus 219 --------qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq------ldgfea- 283 (404)
T KOG0728|consen 219 --------QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ------LDGFEA- 283 (404)
T ss_pred --------HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh------cccccc-
Confidence 47888887777777777776666 99999999987321 11 256666665543 344432
Q ss_pred cccCCceEEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHhHHh
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKTT 666 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~~~~ 666 (691)
.+++-+|++||+.+.+|+||++ |++- |+|++|+.+.+.+|++.+-.+..
T Consensus 284 ---tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmn 335 (404)
T KOG0728|consen 284 ---TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 335 (404)
T ss_pred ---ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc
Confidence 3689999999999999999997 8874 99999999999999998876543
No 27
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.68 E-value=2.6e-16 Score=172.15 Aligned_cols=177 Identities=24% Similarity=0.365 Sum_probs=129.5
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD 542 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~ 542 (691)
+.+.+-+.+++|++.+++.+.+.+.++... ++.++.+++|+||||||||++++++|+.++.+++.+....+.
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~- 216 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV- 216 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH-
Confidence 344566789999999999999988754322 567889999999999999999999999999998887643321
Q ss_pred hhhhhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCC----C---CHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 543 VAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHA----G---DPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 543 ~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~----~---~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
..|+|.....+...+..+....| |+||||+|.+..... + .....+.+.+ ..+.+.
T Consensus 217 --------~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL---------~~ld~~ 279 (398)
T PTZ00454 217 --------QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELL---------NQMDGF 279 (398)
T ss_pred --------HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHH---------HHhhcc
Confidence 35677766666667766655444 999999998863211 1 1112222222 111111
Q ss_pred cccCCceEEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHhHH
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~~~ 665 (691)
. ...++.||+|||.++.+|+++++ ||+. |.|+.|+.+++..|++.++.+.
T Consensus 280 ~-~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~ 332 (398)
T PTZ00454 280 D-QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM 332 (398)
T ss_pred C-CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC
Confidence 1 12578999999999999999987 8874 8999999999999999888653
No 28
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.67 E-value=2.8e-16 Score=175.38 Aligned_cols=169 Identities=26% Similarity=0.399 Sum_probs=122.4
Q ss_pred hccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeE--------EEEeCcc
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFF--------RFSVGGL 540 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~--------~i~~~~~ 540 (691)
+++|+|++..++.+.+.+.+.... ++.++++++|+||||||||++++++|+.++.+.+ .+++.+
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~- 259 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG- 259 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc-
Confidence 357889999999998888764332 5677888999999999999999999999876522 222222
Q ss_pred chhhhhhcccCcccccccchHHHHHHHhcc-----cCCEEEehhhhhhcccCC----CC----HHHHHHhhcCHHHHHHH
Q 005548 541 ADVAEIKGHRRTYIGAMPGKMVQCLKNVGT-----ANPLVLIDEIDKLGRGHA----GD----PASALLELLDPEQNANF 607 (691)
Q Consensus 541 ~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~-----~~~VlllDEidkl~~~~~----~~----~~~~LL~~LD~~~~~~~ 607 (691)
.++ ..+|+|.....+...+..+.. .+.|+||||+|.+..... .+ ..+.|+..||.
T Consensus 260 ---~eL---l~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg------ 327 (512)
T TIGR03689 260 ---PEL---LNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG------ 327 (512)
T ss_pred ---hhh---cccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc------
Confidence 111 135777776666655555433 244999999999874322 11 23344444442
Q ss_pred HHhhccccccCCceEEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHhH
Q 005548 608 LDHYLDVPIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEK 664 (691)
Q Consensus 608 ~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~~ 664 (691)
+ . ..+++++|+|||+++.||+++++ ||+. |+|+.|+.+++.+|++.|+..
T Consensus 328 ---l---~-~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 328 ---V---E-SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ---c---c-cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1 1 23689999999999999999998 9975 899999999999999999864
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2e-16 Score=159.48 Aligned_cols=177 Identities=23% Similarity=0.292 Sum_probs=135.3
Q ss_pred hhhhccccchHHHHHHHHHHHHhcccc------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhh
Q 005548 473 KILDEDHYGLNDVKERILEFIAVGKLR------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEI 546 (691)
Q Consensus 473 ~~l~~~i~Gl~~vk~~i~~~l~l~~~~------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l 546 (691)
.+-|+++.|++.+|+.+.+.+.++--- ...+=+.++|+||||||||.||+++|...+.+|..|+-+.+.
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv----- 203 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV----- 203 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH-----
Confidence 344579999999999999998775221 223446799999999999999999999999888888765542
Q ss_pred hcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEE
Q 005548 547 KGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVC 625 (691)
Q Consensus 547 ~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~ 625 (691)
.+|.|..+.-..+.|.++....| |+||||||.++...+.+...+-- .....|+-...++..+..+++++.
T Consensus 204 ----SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasR-----RIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 204 ----SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASR-----RIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred ----HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHH-----HHHHHHHHhhhccccCCCceEEEe
Confidence 36888887777788888877666 99999999888544432211111 111234455556666778999999
Q ss_pred EeCCCCCCChhhcCeEEE-EEEcCCCHHHHHHHHHHHHh
Q 005548 626 TANVVENIPNPLLDRMEV-IAIAGYITDEKMHIARDYLE 663 (691)
Q Consensus 626 TsN~~~~l~~aLldR~~i-I~~~~~~~~e~~~I~~~~l~ 663 (691)
+||.+..+|.|+++||+- |.++-|....+..+++.++.
T Consensus 275 ATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG 313 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLG 313 (439)
T ss_pred cCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccC
Confidence 999999999999999985 88888888888888877664
No 30
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.67 E-value=9e-17 Score=159.26 Aligned_cols=191 Identities=21% Similarity=0.299 Sum_probs=114.5
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc
Q 005548 469 IRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG 548 (691)
Q Consensus 469 ~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g 548 (691)
..+++...++++||++++..+.-++...... ...-.+++|+||||+||||||+.||+.++.++..++...+..
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k------ 88 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK------ 88 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S------
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh------
Confidence 3466777789999999999876665432211 123457999999999999999999999999887665432211
Q ss_pred ccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHH-H--hhccccccCCceEEEE
Q 005548 549 HRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFL-D--HYLDVPIDLSKVLFVC 625 (691)
Q Consensus 549 ~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~-d--~~~~~~~~~~~vi~I~ 625 (691)
.+.+...+... ..+.|+|+|||+++.+ .....|+..|+.....-+. . .-..+..+.....+|.
T Consensus 89 ---------~~dl~~il~~l-~~~~ILFIDEIHRlnk----~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 89 ---------AGDLAAILTNL-KEGDILFIDEIHRLNK----AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp ---------CHHHHHHHHT---TT-EEEECTCCC--H----HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred ---------HHHHHHHHHhc-CCCcEEEEechhhccH----HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 22333333333 3456999999999975 3455666555421100000 0 0011233456789999
Q ss_pred EeCCCCCCChhhcCeEEEE-EEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 626 TANVVENIPNPLLDRMEVI-AIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 626 TsN~~~~l~~aLldR~~iI-~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
+|+....++.+|.|||.++ ++..|+.++..+|+.+.... -.+.+++++..+|.++
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~----------l~i~i~~~~~~~Ia~r 210 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI----------LNIEIDEDAAEEIARR 210 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC----------TT-EE-HHHHHHHHHC
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH----------hCCCcCHHHHHHHHHh
Confidence 9999999999999999875 89999999999999875543 2377889888888764
No 31
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.66 E-value=3.7e-16 Score=164.58 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=115.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcc------cCC
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGT------ANP 573 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~------~~~ 573 (691)
+++.+.+++|+||||||||.++++||+.++.++..++.+++. .+|+|..+..+.+.+..+.. .++
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~---------sk~vGEsEk~IR~~F~~A~~~a~~~~aPc 214 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE---------SENAGEPGKLIRQRYREAADIIKKKGKMS 214 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh---------cCcCCcHHHHHHHHHHHHHHHhhccCCCe
Confidence 567889999999999999999999999999999888876553 47999999999888887753 345
Q ss_pred EEEehhhhhhcccCCC---CH-----HHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcC--eEEE
Q 005548 574 LVLIDEIDKLGRGHAG---DP-----ASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLD--RMEV 643 (691)
Q Consensus 574 VlllDEidkl~~~~~~---~~-----~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~i 643 (691)
|+||||||........ .+ ...|++.+|...+.. ++.........+++.||+|+|+++.|+++|++ ||+.
T Consensus 215 VLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~-l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk 293 (413)
T PLN00020 215 CLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVS-LGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK 293 (413)
T ss_pred EEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccc-ccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc
Confidence 9999999998753321 11 245666666321110 01110000123679999999999999999999 9976
Q ss_pred EEEcCCCHHHHHHHHHHHHhH
Q 005548 644 IAIAGYITDEKMHIARDYLEK 664 (691)
Q Consensus 644 I~~~~~~~~e~~~I~~~~l~~ 664 (691)
. |..|+.+++.+|++.++++
T Consensus 294 ~-i~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 294 F-YWAPTREDRIGVVHGIFRD 313 (413)
T ss_pred e-eCCCCHHHHHHHHHHHhcc
Confidence 4 3578999999999998875
No 32
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.65 E-value=8.3e-16 Score=169.38 Aligned_cols=176 Identities=27% Similarity=0.386 Sum_probs=129.0
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchh
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADV 543 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~ 543 (691)
.+...+.++.|++..++.+.+++.+...+ ++.++.+++|+||||||||++++++|+.++.++..+....+.
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~-- 254 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI-- 254 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh--
Confidence 34455679999999999999988764332 567888999999999999999999999999998887654331
Q ss_pred hhhhcccCcccccccchHHHHHHHhcccC-CEEEehhhhhhcccC----CC---CHHHHHHhhcCHHHHHHHHHhhcccc
Q 005548 544 AEIKGHRRTYIGAMPGKMVQCLKNVGTAN-PLVLIDEIDKLGRGH----AG---DPASALLELLDPEQNANFLDHYLDVP 615 (691)
Q Consensus 544 ~~l~g~~~~~vG~~~~~i~~~l~~~~~~~-~VlllDEidkl~~~~----~~---~~~~~LL~~LD~~~~~~~~d~~~~~~ 615 (691)
..|+|..+..+...+..+.... .|+||||+|.+.... ++ .....+++.|.. +|.+.
T Consensus 255 -------~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~------Ldg~~--- 318 (438)
T PTZ00361 255 -------QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQ------LDGFD--- 318 (438)
T ss_pred -------hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHH------Hhhhc---
Confidence 2467776666666666655444 499999999886321 11 122333333221 12221
Q ss_pred ccCCceEEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHhHH
Q 005548 616 IDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 616 ~~~~~vi~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~~~ 665 (691)
...++.||+|||.++.+++++++ ||+. |.|+.|+.+++.+|++.++.+.
T Consensus 319 -~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 319 -SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred -ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 12578999999999999999986 8974 8999999999999999988654
No 33
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.2e-16 Score=175.46 Aligned_cols=172 Identities=26% Similarity=0.407 Sum_probs=136.7
Q ss_pred hhhccccchHHHHHHHHHHHHhcccc------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh
Q 005548 474 ILDEDHYGLNDVKERILEFIAVGKLR------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK 547 (691)
Q Consensus 474 ~l~~~i~Gl~~vk~~i~~~l~l~~~~------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~ 547 (691)
+.++|+.|++++|+.+.+++.+-+-. +..-++.++|+||||||||.||||+|++.+.+|+.++.+++.+
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE----- 382 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE----- 382 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH-----
Confidence 55679999999999999998875433 6777888999999999999999999999999999887666543
Q ss_pred cccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCCC--------C---HHHHHHhhcCHHHHHHHHHhhcccc
Q 005548 548 GHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAG--------D---PASALLELLDPEQNANFLDHYLDVP 615 (691)
Q Consensus 548 g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~--------~---~~~~LL~~LD~~~~~~~~d~~~~~~ 615 (691)
.++|....++...|..+....| |+|+||||...+...+ + ..+.||--||. +.
T Consensus 383 ----~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg---------f~--- 446 (774)
T KOG0731|consen 383 ----MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG---------FE--- 446 (774)
T ss_pred ----HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC---------Cc---
Confidence 3556667788888888877666 9999999998844321 1 24444444442 21
Q ss_pred ccCCceEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHhHHhH
Q 005548 616 IDLSKVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEKTTR 667 (691)
Q Consensus 616 ~~~~~vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~~~~~ 667 (691)
. .++++|+++||+++.+|+||++ ||+ .|.+..|+...+.+|++.|+.+...
T Consensus 447 ~-~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~ 500 (774)
T KOG0731|consen 447 T-SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL 500 (774)
T ss_pred C-CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC
Confidence 1 2679999999999999999997 997 5899999999999999999987543
No 34
>CHL00181 cbbX CbbX; Provisional
Probab=99.65 E-value=6.1e-16 Score=162.71 Aligned_cols=177 Identities=24% Similarity=0.370 Sum_probs=122.9
Q ss_pred chhhhHHHHhhhhhccccchHHHHHHHHHHHHhcccc---------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC---
Q 005548 463 DENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR---------GISQGKIICLSGPPGVGKTSIGRSIARALNR--- 530 (691)
Q Consensus 463 ~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~---------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~--- 530 (691)
....++.++...|+++++|++++|+.+.+.+.+.... ...++.+++|+|||||||||+|+++|+.+..
T Consensus 9 ~~~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 9 YEKTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred ccccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3455678889999999999999999987766532111 2235678999999999999999999998742
Q ss_pred ----CeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhccc-----CCCCHHHHHHhhcCH
Q 005548 531 ----KFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRG-----HAGDPASALLELLDP 601 (691)
Q Consensus 531 ----~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~-----~~~~~~~~LL~~LD~ 601 (691)
++..++.. ++. ..|+|.........+..+ .++|+||||++.+.+. ...+....|++.|+.
T Consensus 89 ~~~~~~~~v~~~------~l~---~~~~g~~~~~~~~~l~~a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~ 157 (287)
T CHL00181 89 IKKGHLLTVTRD------DLV---GQYIGHTAPKTKEVLKKA--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN 157 (287)
T ss_pred CCCCceEEecHH------HHH---HHHhccchHHHHHHHHHc--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc
Confidence 23333311 121 245666555554555554 3569999999988532 122345555555543
Q ss_pred HHHHHHHHhhccccccCCceEEEEEeCCCC-----CCChhhcCeEE-EEEEcCCCHHHHHHHHHHHHhHH
Q 005548 602 EQNANFLDHYLDVPIDLSKVLFVCTANVVE-----NIPNPLLDRME-VIAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 602 ~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~-----~l~~aLldR~~-iI~~~~~~~~e~~~I~~~~l~~~ 665 (691)
...+++||++++... .++++|.+||. .|.|++|+.+++.+|+..++.+.
T Consensus 158 ---------------~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 158 ---------------QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred ---------------CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 124677777776421 34689999997 58999999999999999999874
No 35
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8e-16 Score=174.67 Aligned_cols=167 Identities=26% Similarity=0.394 Sum_probs=135.2
Q ss_pred hccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG 548 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g 548 (691)
+.++.|++.+++.+.+.+...... +..+..+++|+||||||||+||+++|..++.++..+....+.
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~------- 313 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL------- 313 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh-------
Confidence 457888899998888877665332 456777999999999999999999999999999988866443
Q ss_pred ccCcccccccchHHHHHHHhcccC-CEEEehhhhhhcccCCC-------CHHHHHHhhcCHHHHHHHHHhhccccccCCc
Q 005548 549 HRRTYIGAMPGKMVQCLKNVGTAN-PLVLIDEIDKLGRGHAG-------DPASALLELLDPEQNANFLDHYLDVPIDLSK 620 (691)
Q Consensus 549 ~~~~~vG~~~~~i~~~l~~~~~~~-~VlllDEidkl~~~~~~-------~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~ 620 (691)
.+|+|.....+...|..+.... +|+|+||+|++...... .+.+.|+..+|. + . +.++
T Consensus 314 --sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~---------~---e-~~~~ 378 (494)
T COG0464 314 --SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDG---------I---E-KAEG 378 (494)
T ss_pred --ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcC---------C---C-ccCc
Confidence 4799999999999999988544 59999999999854432 244444444442 1 1 3468
Q ss_pred eEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHhH
Q 005548 621 VLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEK 664 (691)
Q Consensus 621 vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~~ 664 (691)
+++|++||.++.+|+++++ ||+ ++.++.|+.+++.+|++.++..
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999 997 5899999999999999999984
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.64 E-value=1.2e-15 Score=180.84 Aligned_cols=172 Identities=22% Similarity=0.358 Sum_probs=133.3
Q ss_pred hhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhh
Q 005548 472 QKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVA 544 (691)
Q Consensus 472 ~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~ 544 (691)
..+-+++++|++.+++.+.+.+.++... ++..+..++|+||||||||++|+++|+.++.++..+....+.
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~--- 524 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL--- 524 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh---
Confidence 3455678999999999998887653222 456778899999999999999999999999999887754432
Q ss_pred hhhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCCC--------CHHHHHHhhcCHHHHHHHHHhhcccc
Q 005548 545 EIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAG--------DPASALLELLDPEQNANFLDHYLDVP 615 (691)
Q Consensus 545 ~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~--------~~~~~LL~~LD~~~~~~~~d~~~~~~ 615 (691)
.+|+|.....+...|..+....| |+||||+|.+...... ...+.|+..||. +.
T Consensus 525 ------~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg------------~~ 586 (733)
T TIGR01243 525 ------SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG------------IQ 586 (733)
T ss_pred ------hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc------------cc
Confidence 36899988888888887766554 9999999998743221 123444444442 11
Q ss_pred ccCCceEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHhHH
Q 005548 616 IDLSKVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 616 ~~~~~vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~~~ 665 (691)
+.++++||+|||.++.+|+++++ ||+ .|+++.|+.+++.+|++.++.+.
T Consensus 587 -~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~ 638 (733)
T TIGR01243 587 -ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM 638 (733)
T ss_pred -CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC
Confidence 23689999999999999999997 997 58999999999999999877643
No 37
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.63 E-value=2.7e-15 Score=164.64 Aligned_cols=215 Identities=21% Similarity=0.273 Sum_probs=141.5
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHh--ccccC--------CCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEe
Q 005548 468 VIRAQKILDEDHYGLNDVKERILEFIAV--GKLRG--------ISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSV 537 (691)
Q Consensus 468 ~~~~~~~l~~~i~Gl~~vk~~i~~~l~l--~~~~~--------~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~ 537 (691)
..+....|++.++|++++++.+...+.. .++.. .....+++|+||||||||++|++||..++.++..+++
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 4556778889999999999988655421 12210 1135679999999999999999999999999998887
Q ss_pred CccchhhhhhcccCcccccccchHHHHHHH------hcccCCEEEehhhhhhcccC---------CC-CHHHHHHhhcCH
Q 005548 538 GGLADVAEIKGHRRTYIGAMPGKMVQCLKN------VGTANPLVLIDEIDKLGRGH---------AG-DPASALLELLDP 601 (691)
Q Consensus 538 ~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~------~~~~~~VlllDEidkl~~~~---------~~-~~~~~LL~~LD~ 601 (691)
+.+.. .+|+|.....+...+.. ....++|+||||+|++.+.. ++ +++++||+.||.
T Consensus 142 ~~l~~--------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 142 TTLTE--------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred hhccc--------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 65432 36777765544322211 12245699999999997531 11 378899999974
Q ss_pred HH------HHHHHHhhccccccCCceEEEEEeCCC----------------------C----------------------
Q 005548 602 EQ------NANFLDHYLDVPIDLSKVLFVCTANVV----------------------E---------------------- 631 (691)
Q Consensus 602 ~~------~~~~~d~~~~~~~~~~~vi~I~TsN~~----------------------~---------------------- 631 (691)
.. .....+....+.++.++++||++.+.. .
T Consensus 214 ~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~ 293 (412)
T PRK05342 214 TVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKF 293 (412)
T ss_pred CeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHH
Confidence 21 111111111223344555555432210 0
Q ss_pred CCChhhcCeEE-EEEEcCCCHHHHHHHHHH---HHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 632 NIPNPLLDRME-VIAIAGYITDEKMHIARD---YLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 632 ~l~~aLldR~~-iI~~~~~~~~e~~~I~~~---~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
.+.|+|+.|++ ++.|.+++.++...|+.. .+.++..+........+.++++++++|++.
T Consensus 294 gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~ 356 (412)
T PRK05342 294 GLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKK 356 (412)
T ss_pred hhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHh
Confidence 14678999997 579999999999999984 233322333344567799999999999874
No 38
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.2e-15 Score=174.82 Aligned_cols=232 Identities=21% Similarity=0.302 Sum_probs=172.2
Q ss_pred hhhHhHHhhhcCCCCCCC-CchhhhHHHHhhhhhccccchHHHHHHHHHHHHhccccCCC--CCceEEEEcCCCCcHHHH
Q 005548 444 NVTRNYLDWLTALPWGNY-SDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLRGIS--QGKIICLSGPPGVGKTSI 520 (691)
Q Consensus 444 ~~~~~~l~~~~~lp~~~~-~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~--~g~~vlL~GPpGtGKTtL 520 (691)
..+......|+++|.... ..+...+..+.+.|.+.|+||+++...+.+.+........+ +.--++|.||.|+|||-|
T Consensus 528 ~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~l 607 (898)
T KOG1051|consen 528 SDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTEL 607 (898)
T ss_pred cchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHH
Confidence 345556677888888754 34567888999999999999999999999999876654333 445599999999999999
Q ss_pred HHHHHHHhc---CCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCC--EEEehhhhhhcccCCCCHHHHH
Q 005548 521 GRSIARALN---RKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP--LVLIDEIDKLGRGHAGDPASAL 595 (691)
Q Consensus 521 akaLA~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~--VlllDEidkl~~~~~~~~~~~L 595 (691)
|++||..+. ..+.+|+++.+.+++.+.|.+.+|+|+..+ ..+..+.+.+| |+||||||++. .++.+.|
T Consensus 608 AkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~g---g~LteavrrrP~sVVLfdeIEkAh----~~v~n~l 680 (898)
T KOG1051|consen 608 AKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEG---GQLTEAVKRRPYSVVLFEEIEKAH----PDVLNIL 680 (898)
T ss_pred HHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhH---HHHHHHHhcCCceEEEEechhhcC----HHHHHHH
Confidence 999999984 458889998888888888999999999887 34566666555 99999999994 4788999
Q ss_pred HhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC----------------------------------------CCCh
Q 005548 596 LELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE----------------------------------------NIPN 635 (691)
Q Consensus 596 L~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~----------------------------------------~l~~ 635 (691)
++.+|. .++.|.. +..+++++++||||+|... .+.+
T Consensus 681 lq~lD~---GrltDs~-Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~ 756 (898)
T KOG1051|consen 681 LQLLDR---GRLTDSH-GREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRK 756 (898)
T ss_pred HHHHhc---CccccCC-CcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccCh
Confidence 999997 5556655 6678999999999998531 1234
Q ss_pred hhcCeEE-EEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHh
Q 005548 636 PLLDRME-VIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGI 687 (691)
Q Consensus 636 aLldR~~-iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~i 687 (691)
++++|+. ++.|.+++.++..+|+..-+.....+..+.. ..+.+++.+.+++
T Consensus 757 Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~-~~~~v~~~~~~~v 808 (898)
T KOG1051|consen 757 EFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERE-LLLLVTDRVDDKV 808 (898)
T ss_pred HHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhhhH-HHHHHHHHHHhhh
Confidence 5666664 5677788877777777766654433322211 2234455554443
No 39
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.9e-15 Score=157.64 Aligned_cols=179 Identities=21% Similarity=0.320 Sum_probs=129.4
Q ss_pred hccccchHHHHHHHHHHHHhcccc--------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLR--------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK 547 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~--------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~ 547 (691)
+.+|.|++.+++.+.+.+.++... ...+..+++|+||||||||.+|+++|+..+..++.|.++++.+
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~----- 165 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS----- 165 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch-----
Confidence 458999999999999988776332 3457788999999999999999999999999999999988764
Q ss_pred cccCcccccccchHHHHHHHhcc-cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEE
Q 005548 548 GHRRTYIGAMPGKMVQCLKNVGT-ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCT 626 (691)
Q Consensus 548 g~~~~~vG~~~~~i~~~l~~~~~-~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~T 626 (691)
+|.|.........|..+.. .+.++||||+|.+....+..-..+.- .+ ..+-...+|++..- +...++|+++
T Consensus 166 ----KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a-~m-K~eFM~~WDGl~s~--~~~rVlVlgA 237 (386)
T KOG0737|consen 166 ----KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATA-MM-KNEFMALWDGLSSK--DSERVLVLGA 237 (386)
T ss_pred ----hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHH-HH-HHHHHHHhccccCC--CCceEEEEeC
Confidence 3444444434444444444 44499999999887433221111111 00 11111234444322 2236889999
Q ss_pred eCCCCCCChhhcCeEE-EEEEcCCCHHHHHHHHHHHHhHHhH
Q 005548 627 ANVVENIPNPLLDRME-VIAIAGYITDEKMHIARDYLEKTTR 667 (691)
Q Consensus 627 sN~~~~l~~aLldR~~-iI~~~~~~~~e~~~I~~~~l~~~~~ 667 (691)
||++.++|+|+++|+. .+++.-|+..+|.+|++-+|.+..+
T Consensus 238 TNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~ 279 (386)
T KOG0737|consen 238 TNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKL 279 (386)
T ss_pred CCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhccccc
Confidence 9999999999999997 5899999999999999999987654
No 40
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.9e-16 Score=157.88 Aligned_cols=180 Identities=27% Similarity=0.386 Sum_probs=142.5
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 468 VIRAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 468 ~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++.....++.|++...+.+.+.+.++... ++.+++.++|+|+||||||.||+++|+....+|.++..+++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 44556666779999999999999999887554 78999999999999999999999999999888887764433
Q ss_pred chhhhhhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcc----cCCC---CHHHHHHhhcCHHHHHHHHHhhc
Q 005548 541 ADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGR----GHAG---DPASALLELLDPEQNANFLDHYL 612 (691)
Q Consensus 541 ~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~----~~~~---~~~~~LL~~LD~~~~~~~~d~~~ 612 (691)
. .+|.|..|.-..+.|..+....| |+||||||.+.. ..++ ++...+|+.|.. +|++.
T Consensus 256 ------i---QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ------ldGFd 320 (440)
T KOG0726|consen 256 ------I---QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ------LDGFD 320 (440)
T ss_pred ------H---HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHh------ccCcc
Confidence 2 47999999888888888877666 999999998872 1222 256666665543 34442
Q ss_pred cccccCCceEEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHhHHh
Q 005548 613 DVPIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKTT 666 (691)
Q Consensus 613 ~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~~~~ 666 (691)
. .+.+-+|++||..+.+||+|.+ |++- |.|+.++...+..|+..+..+..
T Consensus 321 s----rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt 373 (440)
T KOG0726|consen 321 S----RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT 373 (440)
T ss_pred c----cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccc
Confidence 2 2578999999999999999997 8874 99999999999988887765443
No 41
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.62 E-value=5.9e-15 Score=161.14 Aligned_cols=211 Identities=19% Similarity=0.238 Sum_probs=145.3
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHh--ccccC---------C-CCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE
Q 005548 468 VIRAQKILDEDHYGLNDVKERILEFIAV--GKLRG---------I-SQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF 535 (691)
Q Consensus 468 ~~~~~~~l~~~i~Gl~~vk~~i~~~l~l--~~~~~---------~-~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i 535 (691)
..+....|++.++|++++++.+...+.. .++.. + ..+.+++|+||||||||++|++||..++.++..+
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 4456788999999999999988765521 11111 0 1245899999999999999999999999998877
Q ss_pred EeCccchhhhhhcccCcccccccchHH-HHHHHh-----cccCCEEEehhhhhhcccC---------CC-CHHHHHHhhc
Q 005548 536 SVGGLADVAEIKGHRRTYIGAMPGKMV-QCLKNV-----GTANPLVLIDEIDKLGRGH---------AG-DPASALLELL 599 (691)
Q Consensus 536 ~~~~~~~~~~l~g~~~~~vG~~~~~i~-~~l~~~-----~~~~~VlllDEidkl~~~~---------~~-~~~~~LL~~L 599 (691)
++..+. ..+|+|...+... ..+... ...++|+||||+|++.+.. ++ ++++.||++|
T Consensus 148 da~~L~--------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iL 219 (413)
T TIGR00382 148 DATTLT--------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKII 219 (413)
T ss_pred chhhcc--------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHh
Confidence 765542 1357777533322 222211 1234599999999997521 11 5889999999
Q ss_pred CHHHHHHHHH--hhccccccCCceEEEEEeCCCC----------------------------------------------
Q 005548 600 DPEQNANFLD--HYLDVPIDLSKVLFVCTANVVE---------------------------------------------- 631 (691)
Q Consensus 600 D~~~~~~~~d--~~~~~~~~~~~vi~I~TsN~~~---------------------------------------------- 631 (691)
+. .+.+ ...+...++.++++|+|+|...
T Consensus 220 eG----~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~d 295 (413)
T TIGR00382 220 EG----TVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPED 295 (413)
T ss_pred hc----cceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHH
Confidence 63 2221 1123344567888888888610
Q ss_pred ----CCChhhcCeEE-EEEEcCCCHHHHHHHHHHH---HhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 632 ----NIPNPLLDRME-VIAIAGYITDEKMHIARDY---LEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 632 ----~l~~aLldR~~-iI~~~~~~~~e~~~I~~~~---l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
.+.|+|+.|++ ++.|.+++.++..+|+... +.+...+........+.++++++++|+++
T Consensus 296 l~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~ 362 (413)
T TIGR00382 296 LVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKK 362 (413)
T ss_pred HHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHh
Confidence 14578999996 5789999999999999875 33333344555667899999999999864
No 42
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.9e-15 Score=149.85 Aligned_cols=172 Identities=26% Similarity=0.408 Sum_probs=132.3
Q ss_pred hccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG 548 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g 548 (691)
.++|.|++...+.+.+++.++... ++.+++.++++||||+|||.+||+.|...+.+|..+....+
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL-------- 241 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL-------- 241 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH--------
Confidence 369999999999999999887543 78899999999999999999999999988777654432111
Q ss_pred ccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcc-----cCCC--CHHHHHHhhcCHHHHHHHHHhhccccccCCc
Q 005548 549 HRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGR-----GHAG--DPASALLELLDPEQNANFLDHYLDVPIDLSK 620 (691)
Q Consensus 549 ~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~-----~~~~--~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~ 620 (691)
...|+|....-...+|..+....| |+||||+|.+.. ...+ ++...+|+.|.. +|++. ....
T Consensus 242 -VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ------LDGFs----s~~~ 310 (424)
T KOG0652|consen 242 -VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ------LDGFS----SDDR 310 (424)
T ss_pred -HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh------hcCCC----Cccc
Confidence 135777776667778877776666 999999998872 1122 256666665543 33332 2257
Q ss_pred eEEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHhHHh
Q 005548 621 VLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKTT 666 (691)
Q Consensus 621 vi~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~~~~ 666 (691)
+-+|++||+.+.++|+|++ |++- |+|+-|+.+.+..|++.+-++..
T Consensus 311 vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn 359 (424)
T KOG0652|consen 311 VKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN 359 (424)
T ss_pred eEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC
Confidence 8899999999999999987 7764 99999999999999998877643
No 43
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.61 E-value=3.2e-15 Score=169.51 Aligned_cols=171 Identities=22% Similarity=0.369 Sum_probs=124.1
Q ss_pred hhhhccccchHHHHHHHHHHHHhccc------cCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhh
Q 005548 473 KILDEDHYGLNDVKERILEFIAVGKL------RGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEI 546 (691)
Q Consensus 473 ~~l~~~i~Gl~~vk~~i~~~l~l~~~------~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l 546 (691)
.+-+++++|++++++.+.+.+....- .+...+.+++|+||||||||+++++||+.++.++..++...+.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~----- 125 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV----- 125 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH-----
Confidence 34456899999999998876653211 1355667899999999999999999999999998877654432
Q ss_pred hcccCcccccccchHHHHHHHhccc-CCEEEehhhhhhcccCCC----------CHHHHHHhhcCHHHHHHHHHhhcccc
Q 005548 547 KGHRRTYIGAMPGKMVQCLKNVGTA-NPLVLIDEIDKLGRGHAG----------DPASALLELLDPEQNANFLDHYLDVP 615 (691)
Q Consensus 547 ~g~~~~~vG~~~~~i~~~l~~~~~~-~~VlllDEidkl~~~~~~----------~~~~~LL~~LD~~~~~~~~d~~~~~~ 615 (691)
..++|.....+...+..+... ++|+||||+|.+...... ...+.|+..+|. + .
T Consensus 126 ----~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~---------~---~ 189 (495)
T TIGR01241 126 ----EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG---------F---G 189 (495)
T ss_pred ----HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc---------c---c
Confidence 134555556666677666543 359999999998743221 122233333331 1 1
Q ss_pred ccCCceEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHhHH
Q 005548 616 IDLSKVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 616 ~~~~~vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~~~ 665 (691)
...+++||+|||.++.+++++++ ||+ .|.++.|+.+++.+|++.++...
T Consensus 190 -~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~ 241 (495)
T TIGR01241 190 -TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK 241 (495)
T ss_pred -CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC
Confidence 23578999999999999999987 886 48999999999999999988653
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.60 E-value=8.9e-15 Score=152.38 Aligned_cols=175 Identities=21% Similarity=0.338 Sum_probs=116.9
Q ss_pred cccchHHHHHHHHHHHHhcccc---------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-------CeEEEEeCccc
Q 005548 478 DHYGLNDVKERILEFIAVGKLR---------GISQGKIICLSGPPGVGKTSIGRSIARALNR-------KFFRFSVGGLA 541 (691)
Q Consensus 478 ~i~Gl~~vk~~i~~~l~l~~~~---------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-------~~~~i~~~~~~ 541 (691)
+++|++++|+.+.+...+.... ..+...+++|+|||||||||+|+++|+.+.. .+..+.+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 6899999999998766543221 2334567999999999999999999988631 1222211
Q ss_pred hhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCC----CHHHHHHhhcCHHHHHHHHHhhcccccc
Q 005548 542 DVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAG----DPASALLELLDPEQNANFLDHYLDVPID 617 (691)
Q Consensus 542 ~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~----~~~~~LL~~LD~~~~~~~~d~~~~~~~~ 617 (691)
.++. ..|+|.........+..+. ++|+||||++.+.++... +....|+..++. .
T Consensus 83 --~~l~---~~~~g~~~~~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~---------------~ 140 (261)
T TIGR02881 83 --ADLV---GEYIGHTAQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED---------------N 140 (261)
T ss_pred --HHhh---hhhccchHHHHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhc---------------c
Confidence 1222 3467776666666665543 569999999998743221 133444444432 1
Q ss_pred CCceEEEEEeCCCC-----CCChhhcCeEE-EEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhh
Q 005548 618 LSKVLFVCTANVVE-----NIPNPLLDRME-VIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIF 688 (691)
Q Consensus 618 ~~~vi~I~TsN~~~-----~l~~aLldR~~-iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii 688 (691)
..++++|++++..+ .+++++.+||. .+.|+.|+.+++.+|+++++... .+.++++++.++.
T Consensus 141 ~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~----------~~~l~~~a~~~l~ 207 (261)
T TIGR02881 141 RNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER----------EYKLTEEAKWKLR 207 (261)
T ss_pred CCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc----------CCccCHHHHHHHH
Confidence 14566666654322 36789999995 59999999999999999988642 2457777777663
No 45
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.4e-15 Score=163.64 Aligned_cols=170 Identities=26% Similarity=0.319 Sum_probs=135.0
Q ss_pred hhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhh
Q 005548 474 ILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEI 546 (691)
Q Consensus 474 ~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l 546 (691)
+-++++.|+.++++.+.+.+.++.-. .++-..+++|+||||||||.||.++|...+..++.+...++-
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL----- 738 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL----- 738 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH-----
Confidence 34568999999999999988776332 456677899999999999999999999998887765533221
Q ss_pred hcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCCCC-------HHHHHHhhcCHHHHHHHHHhhccccccC
Q 005548 547 KGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAGD-------PASALLELLDPEQNANFLDHYLDVPIDL 618 (691)
Q Consensus 547 ~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~~-------~~~~LL~~LD~~~~~~~~d~~~~~~~~~ 618 (691)
.+|+|..++.++..|..+....| |+|+||+|.+.+....| +++.||..||... + +
T Consensus 739 ----~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E---------g----l 801 (952)
T KOG0735|consen 739 ----SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE---------G----L 801 (952)
T ss_pred ----HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc---------c----c
Confidence 48999999999999988876555 99999999988533222 6888888887522 1 4
Q ss_pred CceEEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHhHH
Q 005548 619 SKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 619 ~~vi~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~~~ 665 (691)
.++.++++|.+++.+|+||++ |++- +.-+.|+..+|.+|++..-.+.
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~ 851 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL 851 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc
Confidence 689999999999999999997 8875 6667788899999998866543
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.59 E-value=9.8e-15 Score=153.87 Aligned_cols=173 Identities=17% Similarity=0.269 Sum_probs=122.2
Q ss_pred HhhhhhccccchHHHHH---HHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh
Q 005548 471 AQKILDEDHYGLNDVKE---RILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK 547 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~---~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~ 547 (691)
+++.--++++||+++.- -+...+.- ..-..++|+|||||||||||+.||+..+..|..++... ..+.++
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvkdl- 89 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEA------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVKDL- 89 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhc------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHHHH-
Confidence 44444458899998752 23333332 23357999999999999999999999999999887432 112222
Q ss_pred cccCcccccccchHHHHHHHh-----cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceE
Q 005548 548 GHRRTYIGAMPGKMVQCLKNV-----GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVL 622 (691)
Q Consensus 548 g~~~~~vG~~~~~i~~~l~~~-----~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi 622 (691)
...+..+ .....|+|+|||+++.+.. +..||..++. +.++
T Consensus 90 --------------r~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q----QD~lLp~vE~-----------------G~ii 134 (436)
T COG2256 90 --------------REIIEEARKNRLLGRRTILFLDEIHRFNKAQ----QDALLPHVEN-----------------GTII 134 (436)
T ss_pred --------------HHHHHHHHHHHhcCCceEEEEehhhhcChhh----hhhhhhhhcC-----------------CeEE
Confidence 1112111 1134599999999987643 3455655542 5667
Q ss_pred EEEE--eCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 623 FVCT--ANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 623 ~I~T--sN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
+|++ .|....+.+||++|+.++.|.+++.++..+++.+.+... ..|+....+.+++++++.+++
T Consensus 135 lIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~---~rgl~~~~~~i~~~a~~~l~~ 200 (436)
T COG2256 135 LIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE---ERGLGGQIIVLDEEALDYLVR 200 (436)
T ss_pred EEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh---hcCCCcccccCCHHHHHHHHH
Confidence 7763 467788999999999999999999999999999855543 456776677799999998875
No 47
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-15 Score=151.81 Aligned_cols=180 Identities=23% Similarity=0.363 Sum_probs=138.9
Q ss_pred hhHHHHhhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 005548 466 FDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVG 538 (691)
Q Consensus 466 ~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~ 538 (691)
..+.+-+.+...++.|.++..+.+.+.+.++.++ ++.+++.++|+||||+|||.+|+++|+-.+..|+++..+
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 3444455666789999999999999999888776 788999999999999999999999999999989887654
Q ss_pred ccchhhhhhcccCcccccccchHHHHHHHhcccC-CEEEehhhhhhcccC-------CCCHHHHHHhhcCHHHHHHHHHh
Q 005548 539 GLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTAN-PLVLIDEIDKLGRGH-------AGDPASALLELLDPEQNANFLDH 610 (691)
Q Consensus 539 ~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~-~VlllDEidkl~~~~-------~~~~~~~LL~~LD~~~~~~~~d~ 610 (691)
++. .+|+|.........|.++.... +++|+||+|.+.... ..++...+|+.+.. +|+
T Consensus 246 elv---------qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~q------ldg 310 (435)
T KOG0729|consen 246 ELV---------QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQ------LDG 310 (435)
T ss_pred HHH---------HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHh------ccC
Confidence 432 4799998877778888877644 599999999887321 11256666655432 333
Q ss_pred hccccccCCceEEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHhH
Q 005548 611 YLDVPIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEK 664 (691)
Q Consensus 611 ~~~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~~ 664 (691)
+ . ..+++-++++||+++.++++|++ |++- ++|.-++.+-+.+|++.+-+.
T Consensus 311 f---d-prgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaks 363 (435)
T KOG0729|consen 311 F---D-PRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS 363 (435)
T ss_pred C---C-CCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccc
Confidence 3 2 23789999999999999999997 7764 788888888888777765543
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.57 E-value=1.6e-14 Score=152.08 Aligned_cols=173 Identities=23% Similarity=0.345 Sum_probs=117.8
Q ss_pred hHHHHhhhhhccccchHHHHHHHHHHHHhcccc------C---CCCCceEEEEcCCCCcHHHHHHHHHHHhcC-------
Q 005548 467 DVIRAQKILDEDHYGLNDVKERILEFIAVGKLR------G---ISQGKIICLSGPPGVGKTSIGRSIARALNR------- 530 (691)
Q Consensus 467 ~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~------~---~~~g~~vlL~GPpGtGKTtLakaLA~~l~~------- 530 (691)
.+.+....++..++|++++|+.+.+...+.... + ..++.+++|+||||||||++|+++|+.+..
T Consensus 12 ~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~ 91 (284)
T TIGR02880 12 GITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG 91 (284)
T ss_pred cHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc
Confidence 345566677788999999999997765542221 2 224568999999999999999999998743
Q ss_pred CeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccC-----CCCHHHHHHhhcCHHHHH
Q 005548 531 KFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGH-----AGDPASALLELLDPEQNA 605 (691)
Q Consensus 531 ~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~-----~~~~~~~LL~~LD~~~~~ 605 (691)
++..++.. ++. ..|+|.........+..+ .++++||||++.+.... .....+.|++.|+.
T Consensus 92 ~~v~v~~~------~l~---~~~~g~~~~~~~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~---- 156 (284)
T TIGR02880 92 HLVSVTRD------DLV---GQYIGHTAPKTKEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN---- 156 (284)
T ss_pred eEEEecHH------HHh---HhhcccchHHHHHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhc----
Confidence 23333321 222 135555544555555544 34699999999884221 12234556666543
Q ss_pred HHHHhhccccccCCceEEEEEeCCC--C---CCChhhcCeEE-EEEEcCCCHHHHHHHHHHHHhHH
Q 005548 606 NFLDHYLDVPIDLSKVLFVCTANVV--E---NIPNPLLDRME-VIAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 606 ~~~d~~~~~~~~~~~vi~I~TsN~~--~---~l~~aLldR~~-iI~~~~~~~~e~~~I~~~~l~~~ 665 (691)
...++++|++++.. + .++++|.+||. .|+|++|+.+++..|+..++.+.
T Consensus 157 -----------~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 157 -----------QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred -----------CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 12467777776542 2 24789999997 59999999999999999999874
No 49
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.55 E-value=4.2e-13 Score=155.07 Aligned_cols=279 Identities=20% Similarity=0.264 Sum_probs=163.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhhccC
Q 005548 339 LDVYKRLKLTLELVKKEMEISKIQESIAKAIEEKISGEQRRYLLNEQLKAIKKELGLETDDKTALSAKFRERIEQYKDKC 418 (691)
Q Consensus 339 ~d~~~Rl~~l~~lL~~Eie~l~l~~ei~~~v~~~i~~~qre~~l~eql~~i~kel~~~~~~~~~~~~~~~~~l~~~~~~~ 418 (691)
.++..-++.+.+++...+....++++|.++|++++.+.|.+|+-.-.++-++++.|.+. ...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------- 125 (615)
T TIGR02903 64 RELPEILEDTEDHIADILARRTVENRIERKVETRMQERQNKYLEEIRLQVLKEEKGPEN---SST--------------- 125 (615)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc---HHH---------------
Confidence 34555677777888889999999999999999999999988876666666666554321 111
Q ss_pred ChhhHHHHHHHHHHHhhcccCCccchhhHhHHhhhcCCCCCCCCchhhhHHHHhhhhhccccchHHHHHHHHHHHHhccc
Q 005548 419 PRHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTALPWGNYSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKL 498 (691)
Q Consensus 419 ~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~ 498 (691)
.+++.+++.++... ..+...+ ..++.-..+++|++...+.+...++.
T Consensus 126 --------~~~~~~l~~~~~~~----~~~~~~~------------------~~rp~~~~~iiGqs~~~~~l~~~ia~--- 172 (615)
T TIGR02903 126 --------LKKLERLEKLEKKK----LHKSAQS------------------LLRPRAFSEIVGQERAIKALLAKVAS--- 172 (615)
T ss_pred --------HHHHHHHHHHHHHH----hhhHHhh------------------hcCcCcHHhceeCcHHHHHHHHHHhc---
Confidence 11112222111000 0011001 11222234678999888887666542
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHhc----------CCeEEEEeCccc-hhhhhhcccCcccccccchHH----H
Q 005548 499 RGISQGKIICLSGPPGVGKTSIGRSIARALN----------RKFFRFSVGGLA-DVAEIKGHRRTYIGAMPGKMV----Q 563 (691)
Q Consensus 499 ~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~----------~~~~~i~~~~~~-~~~~l~g~~~~~vG~~~~~i~----~ 563 (691)
....+++|+|||||||||+|+++++... .++..+++..+. +...+. ....|....... .
T Consensus 173 ---~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~---~~llg~~~~~~~~~a~~ 246 (615)
T TIGR02903 173 ---PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT---NPLLGSVHDPIYQGARR 246 (615)
T ss_pred ---CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh---HHhcCCccHHHHHHHHH
Confidence 2456799999999999999999998763 345666654331 111110 011121111110 0
Q ss_pred HHHH-----------hcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHH--------------HHHHhhccccccC
Q 005548 564 CLKN-----------VGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNA--------------NFLDHYLDVPIDL 618 (691)
Q Consensus 564 ~l~~-----------~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~--------------~~~d~~~~~~~~~ 618 (691)
.+.. ....++++||||++.+.. .....|+..|+..... .+...+.... ..
T Consensus 247 ~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~----~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~-~~ 321 (615)
T TIGR02903 247 DLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP----LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEG-AP 321 (615)
T ss_pred HHHHcCCCchhcCchhhcCCCeEEEeccccCCH----HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccC-cc
Confidence 0110 011346999999988864 3345666666432100 0000000101 11
Q ss_pred CceEEEE-EeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 619 SKVLFVC-TANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 619 ~~vi~I~-TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..+++|+ |++.+..++++|.+||..+.|.+++.++...|+++++.+. + +.+++++++.|.+
T Consensus 322 ~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~-----~-----v~ls~eal~~L~~ 383 (615)
T TIGR02903 322 ADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKI-----N-----VHLAAGVEELIAR 383 (615)
T ss_pred ceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHc-----C-----CCCCHHHHHHHHH
Confidence 2344444 5666788999999999999999999999999999987642 2 3477888777654
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.55 E-value=2.9e-14 Score=143.88 Aligned_cols=188 Identities=23% Similarity=0.324 Sum_probs=133.2
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhccc
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHR 550 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~ 550 (691)
.++....+.+|++++|+.+.-++...+.++ ..-.+++|+||||.||||||..||.+++.+....+..-+
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l---------- 88 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL---------- 88 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC-CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc----------
Confidence 455666789999999999988887655442 334579999999999999999999999977654332211
Q ss_pred CcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHH---HhhccccccCCceEEEEEe
Q 005548 551 RTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFL---DHYLDVPIDLSKVLFVCTA 627 (691)
Q Consensus 551 ~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~---d~~~~~~~~~~~vi~I~Ts 627 (691)
.-++.+...+.... .+.|+|+|||+++++ .+-..|+..|+..+..... ..-..+..+.....+|.+|
T Consensus 89 -----eK~gDlaaiLt~Le-~~DVLFIDEIHrl~~----~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 89 -----EKPGDLAAILTNLE-EGDVLFIDEIHRLSP----AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred -----cChhhHHHHHhcCC-cCCeEEEehhhhcCh----hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 12455655555543 556999999999965 3344555555432111000 0112334567789999999
Q ss_pred CCCCCCChhhcCeEEE-EEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 628 NVVENIPNPLLDRMEV-IAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 628 N~~~~l~~aLldR~~i-I~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
.+...+..+|.|||.+ .++..|+.++..+|+.+.-... ++.++++....|.+
T Consensus 159 Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l----------~i~i~~~~a~eIA~ 211 (332)
T COG2255 159 TRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL----------GIEIDEEAALEIAR 211 (332)
T ss_pred cccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh----------CCCCChHHHHHHHH
Confidence 9999999999999986 5999999999999999876542 24567777776654
No 51
>CHL00176 ftsH cell division protein; Validated
Probab=99.54 E-value=4.3e-14 Score=162.84 Aligned_cols=166 Identities=26% Similarity=0.419 Sum_probs=118.8
Q ss_pred ccccchHHHHHHHHHHHHhcccc------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhccc
Q 005548 477 EDHYGLNDVKERILEFIAVGKLR------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHR 550 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~ 550 (691)
+++.|++++++.+.+.+...... +...+.+++|+||||||||++|+++|+.++.++..++++.+..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~-------- 254 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE-------- 254 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH--------
Confidence 47889999888887766542211 3445678999999999999999999999999998877654321
Q ss_pred CcccccccchHHHHHHHhcccC-CEEEehhhhhhcccCC------CC----HHHHHHhhcCHHHHHHHHHhhccccccCC
Q 005548 551 RTYIGAMPGKMVQCLKNVGTAN-PLVLIDEIDKLGRGHA------GD----PASALLELLDPEQNANFLDHYLDVPIDLS 619 (691)
Q Consensus 551 ~~~vG~~~~~i~~~l~~~~~~~-~VlllDEidkl~~~~~------~~----~~~~LL~~LD~~~~~~~~d~~~~~~~~~~ 619 (691)
.++|.....+...+..+.... +|+||||+|.+..... .+ ..+.|+..+|. + . ...
T Consensus 255 -~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg---------~---~-~~~ 320 (638)
T CHL00176 255 -MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG---------F---K-GNK 320 (638)
T ss_pred -HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc---------c---c-CCC
Confidence 234444445556666665443 4999999999863211 01 12233333321 1 1 235
Q ss_pred ceEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHhH
Q 005548 620 KVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEK 664 (691)
Q Consensus 620 ~vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~~ 664 (691)
++++|+|||.++.+++++++ ||+ .|.+..|+.+++.+|++.++..
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 78999999999999999986 786 5899999999999999999875
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.6e-14 Score=161.70 Aligned_cols=182 Identities=19% Similarity=0.194 Sum_probs=123.7
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE--EEeCc--------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR--FSVGG-------- 539 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~--i~~~~-------- 539 (691)
++++..+++++|++++++.+.+++...+ -.+.++|+||+|+||||+++++|+.++...+. ..|+.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~ 83 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHh
Confidence 4666777799999999999998887432 23567999999999999999999998753210 01110
Q ss_pred ---cchhhhhhcccCcccccccchHHHHHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 540 ---LADVAEIKGHRRTYIGAMPGKMVQCLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 540 ---~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
..++.++.......+ ..+...+.... ....|+||||++.+.. ...+.||..|+.
T Consensus 84 ~G~h~DviEIDAas~rgV----DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~----~A~NALLKtLEE---------- 145 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGV----DEMAALLERAVYAPVDARFKVYMIDEVHMLTN----HAFNAMLKTLEE---------- 145 (830)
T ss_pred cCCCceEEEecccccccH----HHHHHHHHHHHhccccCCceEEEEeChhhCCH----HHHHHHHHHHHh----------
Confidence 001111111000111 11222222211 1235999999999854 346777777654
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
...++.||++||....|.+.+++||..+.|..++.++..+.+++.+.++ .+.++++.+..|++
T Consensus 146 -----PP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E----------gI~id~eAL~lIA~ 208 (830)
T PRK07003 146 -----PPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE----------RIAFEPQALRLLAR 208 (830)
T ss_pred -----cCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2368999999999999999999999999999999999999888877642 35566777766653
No 53
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5e-14 Score=158.06 Aligned_cols=170 Identities=23% Similarity=0.374 Sum_probs=131.9
Q ss_pred hhhccccchHHHHHHHHHHHHhcccc------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh
Q 005548 474 ILDEDHYGLNDVKERILEFIAVGKLR------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK 547 (691)
Q Consensus 474 ~l~~~i~Gl~~vk~~i~~~l~l~~~~------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~ 547 (691)
+.+.++.|.+++|+.+.+.+.+-+-. +..-++.++|+||||||||.|||++|+..+.++..++.+.+.+
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe----- 221 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE----- 221 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh-----
Confidence 45568899999999998877654322 3355678999999999999999999999999999988766543
Q ss_pred cccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCCCC----------HHHHHHhhcCHHHHHHHHHhhccccc
Q 005548 548 GHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAGD----------PASALLELLDPEQNANFLDHYLDVPI 616 (691)
Q Consensus 548 g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~~----------~~~~LL~~LD~~~~~~~~d~~~~~~~ 616 (691)
.+||....+....+..+....| |+||||+|...+....+ ..+.||.-+|. +.
T Consensus 222 ----mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG---------F~---- 284 (596)
T COG0465 222 ----MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG---------FG---- 284 (596)
T ss_pred ----hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc---------CC----
Confidence 4777777788888887776555 99999999988543211 34455544443 32
Q ss_pred cCCceEEEEEeCCCCCCChhhcC--eEEE-EEEcCCCHHHHHHHHHHHHhHH
Q 005548 617 DLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 617 ~~~~vi~I~TsN~~~~l~~aLld--R~~i-I~~~~~~~~e~~~I~~~~l~~~ 665 (691)
...++++|++||+++.+|+||++ ||+. |.+..|+...+.+|++-|....
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~ 336 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK 336 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC
Confidence 12589999999999999999997 8874 8889999999999999877654
No 54
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.2e-14 Score=152.00 Aligned_cols=181 Identities=22% Similarity=0.294 Sum_probs=132.8
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhcccc------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhh
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLR------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVA 544 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~ 544 (691)
.+++.+.++.|++++++.+.+.+.++.++ ...+.+.++|.||||+|||.|++|||.+.+..+..|+.+++.
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt--- 223 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT--- 223 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh---
Confidence 44567789999999999999999887664 234566799999999999999999999999999988876654
Q ss_pred hhhcccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhcc-ccccCCceE
Q 005548 545 EIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLD-VPIDLSKVL 622 (691)
Q Consensus 545 ~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~-~~~~~~~vi 622 (691)
.+|+|.....+...|.-+....| |+|+||+|++.......... ..+.....|+-.... ......+++
T Consensus 224 ------sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e-----~srr~ktefLiq~~~~~s~~~drvl 292 (428)
T KOG0740|consen 224 ------SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHE-----SSRRLKTEFLLQFDGKNSAPDDRVL 292 (428)
T ss_pred ------hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccc-----cchhhhhHHHhhhccccCCCCCeEE
Confidence 58999986555566666655555 99999999987332221000 000000111111111 111235899
Q ss_pred EEEEeCCCCCCChhhcCeEE-EEEEcCCCHHHHHHHHHHHHhHH
Q 005548 623 FVCTANVVENIPNPLLDRME-VIAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 623 ~I~TsN~~~~l~~aLldR~~-iI~~~~~~~~e~~~I~~~~l~~~ 665 (691)
+|+|||.++.+|+++++||. ++.++.|+.+.+..++.+++.+.
T Consensus 293 vigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 293 VIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred EEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999996 67899999999999999998864
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=8.2e-14 Score=153.58 Aligned_cols=185 Identities=21% Similarity=0.248 Sum_probs=124.5
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeE--EEEeCccc------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF--RFSVGGLA------ 541 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~--~i~~~~~~------ 541 (691)
+.++..+++++|+++++..+...+.-.+ -++.++|+||+||||||+|+++|+.++.... ...|+...
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 4566677799999999999888877432 2356899999999999999999999875321 01111110
Q ss_pred -----hhhhhhcccCcccccccchHHHHHHH--hcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 542 -----DVAEIKGHRRTYIGAMPGKMVQCLKN--VGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 542 -----~~~~l~g~~~~~vG~~~~~i~~~l~~--~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
++.++.......+..+ ..+...+.. ......|+||||++.+.. +.+++||..|+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~I-ReL~e~l~~~p~~g~~KV~IIDEah~Ls~----~A~NALLKtLEE------------- 147 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENI-RELRDNVKFAPMGGKYKVYIIDEVHMLTD----QSFNALLKTLEE------------- 147 (484)
T ss_pred ccCCccceeechhhcccHHHH-HHHHHHHHhhhhcCCCEEEEEechhhcCH----HHHHHHHHHhhc-------------
Confidence 0111110000001000 001111111 112334999999999964 457788877753
Q ss_pred cccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
...+++||++|+..+.+++++++||..+.|..++.++..+.+++.+.+ +.+.++++++..|++
T Consensus 148 --Pp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----------Egi~~e~eAL~~Ia~ 210 (484)
T PRK14956 148 --PPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----------ENVQYDQEGLFWIAK 210 (484)
T ss_pred --CCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHHHHH
Confidence 246899999999999999999999999999999999888888877664 236688888888765
No 56
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.51 E-value=1.4e-13 Score=148.55 Aligned_cols=114 Identities=17% Similarity=0.188 Sum_probs=83.0
Q ss_pred cCCEEEehhhhhhcccCC--------CCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeC----CCCCCChhhc
Q 005548 571 ANPLVLIDEIDKLGRGHA--------GDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTAN----VVENIPNPLL 638 (691)
Q Consensus 571 ~~~VlllDEidkl~~~~~--------~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN----~~~~l~~aLl 638 (691)
+++|+|||||||+..... .+++..||.+++...... ...+++..+++|||+-- .++++-|+|.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-----k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~ 323 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-----KYGMVKTDHILFIASGAFHVSKPSDLIPELQ 323 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-----cceeEECCceeEEecCCcCCCChhhccHHHh
Confidence 567999999999984321 247889998888643321 12355678999998543 2344558999
Q ss_pred CeEEE-EEEcCCCHHHHHHHHH---HHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 639 DRMEV-IAIAGYITDEKMHIAR---DYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 639 dR~~i-I~~~~~~~~e~~~I~~---~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
.||.+ +.+.+++.++...|+. +-+.+............+.++++++++|++
T Consensus 324 GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~ 378 (443)
T PRK05201 324 GRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAE 378 (443)
T ss_pred CccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHH
Confidence 99986 6999999999999983 234444445556677789999999999875
No 57
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.5e-12 Score=133.02 Aligned_cols=172 Identities=18% Similarity=0.236 Sum_probs=110.9
Q ss_pred cccchHHHHHHHHHHHHhcccc---CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCccc
Q 005548 478 DHYGLNDVKERILEFIAVGKLR---GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYI 554 (691)
Q Consensus 478 ~i~Gl~~vk~~i~~~l~l~~~~---~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~v 554 (691)
+++=...+.++|.+... ...+ ...+-++++|+||||||||.+|+-||...|.++.-++.+++.. + +
T Consensus 356 ~ViL~psLe~Rie~lA~-aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP---l-----G-- 424 (630)
T KOG0742|consen 356 GVILHPSLEKRIEDLAI-ATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP---L-----G-- 424 (630)
T ss_pred CeecCHHHHHHHHHHHH-HhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc---c-----c--
Confidence 34434455555544322 2222 3345578999999999999999999999999887666554422 1 0
Q ss_pred ccccchHHHHHHHhcccCC--EEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCC
Q 005548 555 GAMPGKMVQCLKNVGTANP--LVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVEN 632 (691)
Q Consensus 555 G~~~~~i~~~l~~~~~~~~--VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~ 632 (691)
...-..+...|.++...+. ++||||.|.+...... ..|...+...+...+....-....++++++||.+..
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk-------tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK-------TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD 497 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch-------hhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc
Confidence 0111234566666655443 8999999977622111 111111111111111111112357899999999999
Q ss_pred CChhhcCeEE-EEEEcCCCHHHHHHHHHHHHhHHhH
Q 005548 633 IPNPLLDRME-VIAIAGYITDEKMHIARDYLEKTTR 667 (691)
Q Consensus 633 l~~aLldR~~-iI~~~~~~~~e~~~I~~~~l~~~~~ 667 (691)
+|-++-||++ +++|+-|..+++..++..||.+...
T Consensus 498 lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 498 LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 9999999996 7999999999999999999998764
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.4e-13 Score=155.14 Aligned_cols=184 Identities=17% Similarity=0.163 Sum_probs=123.2
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCe----EEE---EeCcc--
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF----FRF---SVGGL-- 540 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~----~~i---~~~~~-- 540 (691)
+.++..+++++|++++++.+.+.+...++ .+.++|+||+|+||||+++.||+.++... ..+ -|+..
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~gRL-----pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQRL-----HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhCCC-----ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 45666677999999999999998875433 35689999999999999999999997521 000 01110
Q ss_pred ---------chhhhhhcccCcccccccchHHHHHHHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHH
Q 005548 541 ---------ADVAEIKGHRRTYIGAMPGKMVQCLKNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLD 609 (691)
Q Consensus 541 ---------~~~~~l~g~~~~~vG~~~~~i~~~l~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d 609 (691)
.++.++.......+..+.. +...+... .....|+||||+|.+.. ..+++||..|+.
T Consensus 84 C~~I~aG~hpDviEIdAas~~gVDdIRe-Lie~~~~~P~~gr~KViIIDEah~Ls~----~AaNALLKTLEE-------- 150 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDEMAQ-LLDKAVYAPTAGRFKVYMIDEVHMLTN----HAFNAMLKTLEE-------- 150 (700)
T ss_pred HHHHHcCCCCcceEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEEChHhcCH----HHHHHHHHhhcc--------
Confidence 0111111111111111111 11111111 11234999999999964 457788887764
Q ss_pred hhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhh
Q 005548 610 HYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIF 688 (691)
Q Consensus 610 ~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii 688 (691)
..++++||++||....|.+.+++||..+.|..++.++..+.+++++.++ .+.++++++..|+
T Consensus 151 -------PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~E----------gi~~d~eAL~~IA 212 (700)
T PRK12323 151 -------PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEE----------GIAHEVNALRLLA 212 (700)
T ss_pred -------CCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHc----------CCCCCHHHHHHHH
Confidence 3468999999999999999999999999999999999988888877642 2345566655544
No 59
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5.6e-14 Score=143.02 Aligned_cols=170 Identities=25% Similarity=0.379 Sum_probs=128.4
Q ss_pred hhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhh
Q 005548 473 KILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAE 545 (691)
Q Consensus 473 ~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~ 545 (691)
++..+.+.|+-+....+.+.+.++..+ ++.++.+++|+||||+|||.+++++|..++..+..+..+++.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv---- 203 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV---- 203 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh----
Confidence 345568889999888898888887554 678899999999999999999999999999999998877764
Q ss_pred hhcccCcccccccchHHHHHHHhccc-CCEEEehhhhhhccc-CC------CCHHHHHHhhcCHHHHHHHHHhhcccccc
Q 005548 546 IKGHRRTYIGAMPGKMVQCLKNVGTA-NPLVLIDEIDKLGRG-HA------GDPASALLELLDPEQNANFLDHYLDVPID 617 (691)
Q Consensus 546 l~g~~~~~vG~~~~~i~~~l~~~~~~-~~VlllDEidkl~~~-~~------~~~~~~LL~~LD~~~~~~~~d~~~~~~~~ 617 (691)
.+|+|+...-+.+.+..+... ++++|+||||..... .+ ..+...|++.+|. ++.+..
T Consensus 204 -----~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnq------mdgfd~---- 268 (388)
T KOG0651|consen 204 -----DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQ------MDGFDT---- 268 (388)
T ss_pred -----hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHh------hccchh----
Confidence 378888777677777666553 459999999987621 11 1256677777663 333322
Q ss_pred CCceEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHH
Q 005548 618 LSKVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDY 661 (691)
Q Consensus 618 ~~~vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~ 661 (691)
..++-+|||+|+++.+++||++ |++ .+..+-++...++.|++-+
T Consensus 269 l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih 315 (388)
T KOG0651|consen 269 LHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIH 315 (388)
T ss_pred cccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeec
Confidence 3678899999999999999987 776 3666666666666655443
No 60
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.48 E-value=3.5e-13 Score=145.33 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=84.1
Q ss_pred ccCCEEEehhhhhhcccC-------C-CCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeC----CCCCCChhh
Q 005548 570 TANPLVLIDEIDKLGRGH-------A-GDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTAN----VVENIPNPL 637 (691)
Q Consensus 570 ~~~~VlllDEidkl~~~~-------~-~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN----~~~~l~~aL 637 (691)
.+++|+|||||||+.... + .++++.||.+++...... ....++..+++|||+.- .+.++-|.|
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-----k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl 320 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-----KYGMVKTDHILFIAAGAFQLAKPSDLIPEL 320 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-----cceeEECCceeEEecCCcCCCChhhccHHH
Confidence 356799999999998422 1 237889998888643321 12355678999998543 234455889
Q ss_pred cCeEEE-EEEcCCCHHHHHHHHH---HHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 638 LDRMEV-IAIAGYITDEKMHIAR---DYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 638 ldR~~i-I~~~~~~~~e~~~I~~---~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..||.+ +.+.+++.++...|+. +-|.+............+.++++++.+|++
T Consensus 321 ~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~ 376 (441)
T TIGR00390 321 QGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAE 376 (441)
T ss_pred hCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHH
Confidence 999986 6999999999999983 345555555566777889999999999875
No 61
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.48 E-value=1.4e-13 Score=140.46 Aligned_cols=178 Identities=20% Similarity=0.202 Sum_probs=123.9
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC-eEEEEeCccchhhhhhcc
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRK-FFRFSVGGLADVAEIKGH 549 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~-~~~i~~~~~~~~~~l~g~ 549 (691)
.++....++.|++.+++.+.+.+.- .-.++++|+||||||||+.++++|++++.+ ...-.+-.. ..+.-.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l-naSder-- 100 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL-NASDER-- 100 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh-cccccc--
Confidence 4455556889999999999888864 245789999999999999999999999762 111111000 001111
Q ss_pred cCcccccccchHHHHHHHhcc----------cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCC
Q 005548 550 RRTYIGAMPGKMVQCLKNVGT----------ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLS 619 (691)
Q Consensus 550 ~~~~vG~~~~~i~~~l~~~~~----------~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~ 619 (691)
.++...+++..+-..... ...|++|||.|.+.. +.+++|...|+. ...
T Consensus 101 ---Gisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts----daq~aLrr~mE~---------------~s~ 158 (346)
T KOG0989|consen 101 ---GISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS----DAQAALRRTMED---------------FSR 158 (346)
T ss_pred ---cccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH----HHHHHHHHHHhc---------------ccc
Confidence 122222222221111111 113999999999964 566788777764 135
Q ss_pred ceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 620 KVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 620 ~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
.+.||+.+|.++.++.++.+|+.-+.|+.+..+.....++....++ .+.+++++++.|+.
T Consensus 159 ~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E----------~v~~d~~al~~I~~ 218 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKE----------GVDIDDDALKLIAK 218 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHh----------CCCCCHHHHHHHHH
Confidence 7899999999999999999999999999999998888888877653 46688888887764
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=99.47 E-value=2.9e-13 Score=145.11 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=114.9
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeE---EEEeCccchhhhhh
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF---RFSVGGLADVAEIK 547 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~---~i~~~~~~~~~~l~ 547 (691)
.++...++++|++++.+.+..++.. ...++++|+|||||||||+++++|+.+..... .+.+... +.
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s-d~---- 75 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS-DD---- 75 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc-cc----
Confidence 4444555889999999888777652 23357999999999999999999999733211 1111110 00
Q ss_pred cccCcccccccchHHHHHHHh-----cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceE
Q 005548 548 GHRRTYIGAMPGKMVQCLKNV-----GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVL 622 (691)
Q Consensus 548 g~~~~~vG~~~~~i~~~l~~~-----~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi 622 (691)
..+....+.+. .+... .....|++|||+|.+.. +..++|+..++. ....+.
T Consensus 76 ----~~~~~vr~~i~-~~~~~~~~~~~~~~kviiiDE~d~lt~----~aq~aL~~~lE~---------------~~~~t~ 131 (319)
T PLN03025 76 ----RGIDVVRNKIK-MFAQKKVTLPPGRHKIVILDEADSMTS----GAQQALRRTMEI---------------YSNTTR 131 (319)
T ss_pred ----ccHHHHHHHHH-HHHhccccCCCCCeEEEEEechhhcCH----HHHHHHHHHHhc---------------ccCCce
Confidence 00111111111 11111 11234999999999864 234555555431 124567
Q ss_pred EEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 623 FVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 623 ~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
||+++|....+.+++.+|+.+++|..++.++....+...+.++ .+.++++++.+++.
T Consensus 132 ~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~e----------gi~i~~~~l~~i~~ 188 (319)
T PLN03025 132 FALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAE----------KVPYVPEGLEAIIF 188 (319)
T ss_pred EEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 8889998888889999999999999999999998888877652 35678888888775
No 63
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.46 E-value=4.5e-13 Score=158.87 Aligned_cols=168 Identities=24% Similarity=0.369 Sum_probs=123.9
Q ss_pred hhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhh
Q 005548 474 ILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEI 546 (691)
Q Consensus 474 ~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l 546 (691)
.-+++++|++++++.+.+++.+.... ++..+++++|+||||||||+++++||+.++.+++.++...+.
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~----- 249 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIM----- 249 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHh-----
Confidence 34568999999999998888654221 567888999999999999999999999999888877654321
Q ss_pred hcccCcccccccchHHHHHHHhcccC-CEEEehhhhhhcccCCC---C----HHHHHHhhcCHHHHHHHHHhhccccccC
Q 005548 547 KGHRRTYIGAMPGKMVQCLKNVGTAN-PLVLIDEIDKLGRGHAG---D----PASALLELLDPEQNANFLDHYLDVPIDL 618 (691)
Q Consensus 547 ~g~~~~~vG~~~~~i~~~l~~~~~~~-~VlllDEidkl~~~~~~---~----~~~~LL~~LD~~~~~~~~d~~~~~~~~~ 618 (691)
..|.|.....+...+..+.... .|+||||+|.+...... + ..+.|++.+|. +. ..
T Consensus 250 ----~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~---------l~----~~ 312 (733)
T TIGR01243 250 ----SKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDG---------LK----GR 312 (733)
T ss_pred ----cccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhc---------cc----cC
Confidence 2466666666766676665444 49999999998743221 1 23334444332 21 22
Q ss_pred CceEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHh
Q 005548 619 SKVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLE 663 (691)
Q Consensus 619 ~~vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~ 663 (691)
.++++|+++|.++.+++++.+ ||. .+.+..|+.+++.+|++.+..
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc
Confidence 578888999999999999887 886 489999999999999997654
No 64
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5e-13 Score=136.57 Aligned_cols=213 Identities=21% Similarity=0.297 Sum_probs=146.8
Q ss_pred HHHhhhhhccccchHHHHHHH-----HHHHHhcccc---CC-CCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 469 IRAQKILDEDHYGLNDVKERI-----LEFIAVGKLR---GI-SQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 469 ~~~~~~l~~~i~Gl~~vk~~i-----~~~l~l~~~~---~~-~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
.+.+..|++.++|++.+|+.+ ..+-.+.... .+ -...+++|+||+|||||.||+.||+.++.+|..-+...
T Consensus 53 ~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATt 132 (408)
T COG1219 53 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATT 132 (408)
T ss_pred HHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccc
Confidence 356788999999999998875 2333332111 11 13467999999999999999999999999998666555
Q ss_pred cchhhhhhcccCcccccccchHHHHHHHhc------ccCCEEEehhhhhhccc---------CCC-CHHHHHHhhcCHHH
Q 005548 540 LADVAEIKGHRRTYIGAMPGKMVQCLKNVG------TANPLVLIDEIDKLGRG---------HAG-DPASALLELLDPEQ 603 (691)
Q Consensus 540 ~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~------~~~~VlllDEidkl~~~---------~~~-~~~~~LL~~LD~~~ 603 (691)
+.+ .+|||..-.++...+..+. ...+|+++|||||+.+. .++ ++..+||.+++...
T Consensus 133 LTE--------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTv 204 (408)
T COG1219 133 LTE--------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTV 204 (408)
T ss_pred hhh--------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCce
Confidence 432 6899988777655444332 34579999999998842 223 37889998776432
Q ss_pred HH------HHHHhhccccccCCceEEEEEeCCC--------------------------------------------CCC
Q 005548 604 NA------NFLDHYLDVPIDLSKVLFVCTANVV--------------------------------------------ENI 633 (691)
Q Consensus 604 ~~------~~~d~~~~~~~~~~~vi~I~TsN~~--------------------------------------------~~l 633 (691)
.. +-..+..-+.+|.+|++|||..--. ..+
T Consensus 205 asVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGL 284 (408)
T COG1219 205 ASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGL 284 (408)
T ss_pred eccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCC
Confidence 11 1011111123456777777633210 113
Q ss_pred ChhhcCeEEEE-EEcCCCHHHHHHHHH---HHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 634 PNPLLDRMEVI-AIAGYITDEKMHIAR---DYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 634 ~~aLldR~~iI-~~~~~~~~e~~~I~~---~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
-|.|..|+.++ .+..++.+...+|+. +.+.+.......++...+.++++++..+.+
T Consensus 285 IPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~ 344 (408)
T COG1219 285 IPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAK 344 (408)
T ss_pred cHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHH
Confidence 46788999875 899999999998885 456666666778888899999999998875
No 65
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=9.2e-13 Score=147.29 Aligned_cols=185 Identities=21% Similarity=0.298 Sum_probs=119.2
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE-------------EE
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR-------------FS 536 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~-------------i~ 536 (691)
+.++...++++|++++++.+...+.... -++.++|+|||||||||+|+++|+.++..... +.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 4566677799999999998888776432 23558999999999999999999998642110 00
Q ss_pred eCccchhhhhhcccCcccccccchHHHHHHH--hcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 537 VGGLADVAEIKGHRRTYIGAMPGKMVQCLKN--VGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 537 ~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~--~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
.+...+..++.+.....+.... .+...... ......|+++||++.+.. +..+.|+..++.
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~----~a~~~LLk~LE~------------- 143 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTK----EAFNALLKTLEE------------- 143 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHH----HHHHHHHHHHHh-------------
Confidence 0000011111110011111110 11111111 111234999999998853 234566655543
Q ss_pred cccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..+.++||++++.+..+++++.+|+.++.|.+++.++...+++..+... .+.++++++..|++
T Consensus 144 --p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~e----------gi~i~~eal~~Ia~ 206 (472)
T PRK14962 144 --PPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAE----------GIEIDREALSFIAK 206 (472)
T ss_pred --CCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2357888888777778989999999999999999999888888777532 35688888888875
No 66
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.8e-13 Score=139.96 Aligned_cols=176 Identities=25% Similarity=0.385 Sum_probs=117.8
Q ss_pred hhccccchHHHHHHHHHHHHhc------ccc--CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC-------eEEEEeCc
Q 005548 475 LDEDHYGLNDVKERILEFIAVG------KLR--GISQGKIICLSGPPGVGKTSIGRSIARALNRK-------FFRFSVGG 539 (691)
Q Consensus 475 l~~~i~Gl~~vk~~i~~~l~l~------~~~--~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~-------~~~i~~~~ 539 (691)
+|+.++--.++|+++..+.+.. +.+ -+..++.++|+||||||||+|.|+||+.+... ..-|.++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 4455554567888887776542 111 35667889999999999999999999998532 11122222
Q ss_pred cchhhhhhcccCcccccccchHHHHHHHhcccCC--EEEehhhhhhccc--------CCCC---HHHHHHhhcCHHHHHH
Q 005548 540 LADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP--LVLIDEIDKLGRG--------HAGD---PASALLELLDPEQNAN 606 (691)
Q Consensus 540 ~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~--VlllDEidkl~~~--------~~~~---~~~~LL~~LD~~~~~~ 606 (691)
-.-.+.+++...+.|..+++++...... .+. .++|||++.+... ...| +++++|..+|.
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d---~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr----- 291 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVED---RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR----- 291 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhC---CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-----
Confidence 2224455555555666666655443322 333 5679999887621 1112 67788877765
Q ss_pred HHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE-EEcCCCHHHHHHHHHHHHhHHh
Q 005548 607 FLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI-AIAGYITDEKMHIARDYLEKTT 666 (691)
Q Consensus 607 ~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI-~~~~~~~~e~~~I~~~~l~~~~ 666 (691)
++ .+.++++.+|+|..+.+|.||.||.++. .+.+|+...+.+|++.-+.+..
T Consensus 292 ----lK----~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 292 ----LK----RYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred ----hc----cCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 21 3579999999999999999999999975 6666777888899888776543
No 67
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.3e-13 Score=156.72 Aligned_cols=185 Identities=21% Similarity=0.244 Sum_probs=124.0
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeE-EEEeCccc-------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF-RFSVGGLA------- 541 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~-~i~~~~~~------- 541 (691)
+.++..+++++|++++++.+.+++...++ .+.++|+||+||||||+|+++|+.++...+ .....+..
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~rl-----~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQRL-----HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 46666777999999999999888875433 355799999999999999999999975421 10001111
Q ss_pred -----hhhhhhcccCcccccccchHHHHHHHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 542 -----DVAEIKGHRRTYIGAMPGKMVQCLKNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 542 -----~~~~l~g~~~~~vG~~~~~i~~~l~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
++.++.+.....+..+ ..+...+... .....|+||||++++.. +.+++||..|+.
T Consensus 84 ~g~~~DviEidAas~~kVDdI-ReLie~v~~~P~~gk~KViIIDEAh~LT~----eAqNALLKtLEE------------- 145 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDT-RELLDNVQYRPSRGRFKVYLIDEVHMLSR----SSFNALLKTLEE------------- 145 (944)
T ss_pred cCCCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCcEEEEEechHhcCH----HHHHHHHHHHhc-------------
Confidence 0011111000111111 1111111111 12334999999999964 467888887764
Q ss_pred cccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..+++.||++++....+.+.+++||.++.|.+++.++....+++.+... .+.++++++..|++
T Consensus 146 --PP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E----------gI~~edeAL~lIA~ 208 (944)
T PRK14949 146 --PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE----------QLPFEAEALTLLAK 208 (944)
T ss_pred --cCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2367888888888888989999999999999999999998888877652 25577777777654
No 68
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.6e-13 Score=142.46 Aligned_cols=138 Identities=25% Similarity=0.307 Sum_probs=101.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehh
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDE 579 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDE 579 (691)
+.+..+.+||+|||||||||++.|||++++.+.+.+.++++.+..++ ...+.. .....|++|.+
T Consensus 231 GkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dL---------------r~LL~~-t~~kSIivIED 294 (457)
T KOG0743|consen 231 GKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDL---------------RHLLLA-TPNKSILLIED 294 (457)
T ss_pred CcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHH---------------HHHHHh-CCCCcEEEEee
Confidence 67788899999999999999999999999999999998876553332 233333 33455999999
Q ss_pred hhhhcc--cCCC------------CHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcC--eEEE
Q 005548 580 IDKLGR--GHAG------------DPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLD--RMEV 643 (691)
Q Consensus 580 idkl~~--~~~~------------~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~i 643 (691)
||+... +... -..+-||+.+|. +..-. .+-.+||+|||..+.+||||++ ||++
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG---------lwSsc--g~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG---------LWSSC--GDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhcc---------ccccC--CCceEEEEecCChhhcCHhhcCCCccee
Confidence 998741 1111 124445555553 33221 2357889999999999999999 9998
Q ss_pred -EEEcCCCHHHHHHHHHHHHhH
Q 005548 644 -IAIAGYITDEKMHIARDYLEK 664 (691)
Q Consensus 644 -I~~~~~~~~e~~~I~~~~l~~ 664 (691)
|++..=+.+.-..++.+||.-
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCC
Confidence 666666677788899999865
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.7e-13 Score=153.23 Aligned_cols=182 Identities=24% Similarity=0.284 Sum_probs=123.4
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE-EE-e----------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR-FS-V---------- 537 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~-i~-~---------- 537 (691)
+.++..+++++|++++++.+..++.-.+ -.+.++|+||+|+||||+|+++|+.++...+. .. |
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 3566667799999999999988887432 24678999999999999999999998753210 00 1
Q ss_pred -CccchhhhhhcccCcccccccchHHHHHHHh-----cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 538 -GGLADVAEIKGHRRTYIGAMPGKMVQCLKNV-----GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 538 -~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~-----~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
+...++.++.+.....+ ..+...+... .....|+||||++.+.. ..+++|+..|+.
T Consensus 83 ~g~hpDviEIDAAs~~~V----ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~----~A~NALLKtLEE---------- 144 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKV----EDTRELLDNVPYAPTQGRFKVYLIDEVHMLST----HSFNALLKTLEE---------- 144 (702)
T ss_pred cCCCCceEEecccccCCH----HHHHHHHHHHhhhhhcCCcEEEEEechHhcCH----HHHHHHHHHHhc----------
Confidence 00111111111111111 1122222111 11234999999999864 356777776653
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..+++.||+++|....++.++++||..+.|..++.++....+++.+.+. .+.++++++..|++
T Consensus 145 -----PP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE----------gI~id~eAL~~IA~ 207 (702)
T PRK14960 145 -----PPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKE----------QIAADQDAIWQIAE 207 (702)
T ss_pred -----CCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2357889999998888888999999999999999999999988888753 25577777777664
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.45 E-value=1e-12 Score=139.98 Aligned_cols=183 Identities=23% Similarity=0.330 Sum_probs=120.6
Q ss_pred hccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccc
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIG 555 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG 555 (691)
+++++|++++++.+..++...... .....+++|+||||||||+|++++|..++.++..+.......
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------------- 68 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------------- 68 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-------------
Confidence 357899999999988877543221 223457999999999999999999999987654433221110
Q ss_pred cccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh---ccccccCCceEEEEEeCCCCC
Q 005548 556 AMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY---LDVPIDLSKVLFVCTANVVEN 632 (691)
Q Consensus 556 ~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~---~~~~~~~~~vi~I~TsN~~~~ 632 (691)
.+.+...+... ....++||||++.+.. +....|++.++......+.+.- ..+......+++|+++|....
T Consensus 69 --~~~l~~~l~~~-~~~~vl~iDEi~~l~~----~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~ 141 (305)
T TIGR00635 69 --PGDLAAILTNL-EEGDVLFIDEIHRLSP----AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGM 141 (305)
T ss_pred --chhHHHHHHhc-ccCCEEEEehHhhhCH----HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccc
Confidence 11222223222 2345999999999864 2344555555432211111100 011112345788889999899
Q ss_pred CChhhcCeEE-EEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 633 IPNPLLDRME-VIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 633 l~~aLldR~~-iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
+++++.+||. ++.|..|+.++..++++...... .+.++++++.+|++
T Consensus 142 l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~----------~~~~~~~al~~ia~ 189 (305)
T TIGR00635 142 LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL----------NVEIEPEAALEIAR 189 (305)
T ss_pred cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh----------CCCcCHHHHHHHHH
Confidence 9999999996 47999999999999998776531 25578888888765
No 71
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.44 E-value=1.7e-13 Score=126.55 Aligned_cols=120 Identities=33% Similarity=0.490 Sum_probs=86.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccC--CEEEehhhhhhc
Q 005548 507 ICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTAN--PLVLIDEIDKLG 584 (691)
Q Consensus 507 vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~--~VlllDEidkl~ 584 (691)
++|+||||||||++++.+|+.++.++..+++.... ..+.+.....+...+..+...+ .|++|||+|.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI---------SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLF 71 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH---------TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc---------cccccccccccccccccccccccceeeeeccchhcc
Confidence 68999999999999999999999988888876542 1345556667777777765554 599999999998
Q ss_pred ccC---CCC----HHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhc-CeEEE-EEEc
Q 005548 585 RGH---AGD----PASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLL-DRMEV-IAIA 647 (691)
Q Consensus 585 ~~~---~~~----~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLl-dR~~i-I~~~ 647 (691)
... ... ..+.|+..++. ......+++||+|+|..+.+++++. +||.. +.++
T Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~------------~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 72 PKSQPSSSSFEQRLLNQLLSLLDN------------PSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp HHCSTSSSHHHHHHHHHHHHHHHT------------TTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred cccccccccccccccceeeecccc------------cccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 543 111 23333333332 2212357999999999999999999 99975 5654
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.8e-13 Score=152.98 Aligned_cols=186 Identities=19% Similarity=0.184 Sum_probs=124.5
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE--EEeC--------
Q 005548 469 IRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR--FSVG-------- 538 (691)
Q Consensus 469 ~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~--i~~~-------- 538 (691)
.+.++..+++++|++++++.+..++...++ ++.++|+||+|+||||+|+++|+.++...+. -.|+
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~~~l-----~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQQYL-----HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHhCCC-----CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 346666777999999999999998875432 3568999999999999999999999653210 0011
Q ss_pred ---ccchhhhhhcccCcccccccchHHHHHHHhc--ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhcc
Q 005548 539 ---GLADVAEIKGHRRTYIGAMPGKMVQCLKNVG--TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLD 613 (691)
Q Consensus 539 ---~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~--~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~ 613 (691)
...|+.++.+.....+..+. .+...+.... ....|++|||++.+.. +..++|+..|+.
T Consensus 83 ~~g~~~d~~eidaas~~~v~~iR-~l~~~~~~~p~~~~~kV~iIDE~~~ls~----~a~naLLk~LEe------------ 145 (509)
T PRK14958 83 DEGRFPDLFEVDAASRTKVEDTR-ELLDNIPYAPTKGRFKVYLIDEVHMLSG----HSFNALLKTLEE------------ 145 (509)
T ss_pred hcCCCceEEEEcccccCCHHHHH-HHHHHHhhccccCCcEEEEEEChHhcCH----HHHHHHHHHHhc------------
Confidence 11111122111111121111 1111111111 1234999999999864 456778877764
Q ss_pred ccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 614 VPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 614 ~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..+++.||++|+....+++.+.+||..++|..++.++....+.+.+.+. .+.++++++..|++
T Consensus 146 ---pp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~e----------gi~~~~~al~~ia~ 208 (509)
T PRK14958 146 ---PPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEE----------NVEFENAALDLLAR 208 (509)
T ss_pred ---cCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2367889999998888988999999999999999999888888877753 24467777776654
No 73
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.43 E-value=3.1e-13 Score=164.16 Aligned_cols=152 Identities=13% Similarity=0.189 Sum_probs=105.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhh-------hh-hcc----------------------
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVA-------EI-KGH---------------------- 549 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~-------~l-~g~---------------------- 549 (691)
+..++++++|+||||||||.|||+||+..+.++..|+++.+.+.. .+ .|.
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 346778899999999999999999999999999999875543210 00 000
Q ss_pred --cCcccccccch--HHHHHHHhcccCC-EEEehhhhhhcccCCCCH-HHHHHhhcCHHHHHHHHHhhccccccCCceEE
Q 005548 550 --RRTYIGAMPGK--MVQCLKNVGTANP-LVLIDEIDKLGRGHAGDP-ASALLELLDPEQNANFLDHYLDVPIDLSKVLF 623 (691)
Q Consensus 550 --~~~~vG~~~~~--i~~~l~~~~~~~~-VlllDEidkl~~~~~~~~-~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~ 623 (691)
...+++...+. +...+..|....| |++|||||.+........ +..|+..||. ..+.. ...+++|
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg---------~~~~~-s~~~VIV 1775 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSR---------DCERC-STRNILV 1775 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcc---------ccccC-CCCCEEE
Confidence 00112222222 5566777766555 999999999986533222 5566665553 11101 2358999
Q ss_pred EEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHH
Q 005548 624 VCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDY 661 (691)
Q Consensus 624 I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~ 661 (691)
|+|||+++.+|+||++ ||+ .|.+..|+..++.+++...
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~IL 1816 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTL 1816 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHH
Confidence 9999999999999998 997 4899999988888877654
No 74
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.43 E-value=1e-12 Score=152.94 Aligned_cols=168 Identities=21% Similarity=0.359 Sum_probs=119.6
Q ss_pred hccccchHHHHHHHHHHHHhcccc------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcc
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLR------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGH 549 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~ 549 (691)
..++.|++..++++.+.+....-. +...+++++|+||||||||++++++++.++.+++.++...+..
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~------- 223 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE------- 223 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH-------
Confidence 346778888887776655442110 2233456999999999999999999999999998887654321
Q ss_pred cCcccccccchHHHHHHHhcccC-CEEEehhhhhhcccCCC----C------HHHHHHhhcCHHHHHHHHHhhccccccC
Q 005548 550 RRTYIGAMPGKMVQCLKNVGTAN-PLVLIDEIDKLGRGHAG----D------PASALLELLDPEQNANFLDHYLDVPIDL 618 (691)
Q Consensus 550 ~~~~vG~~~~~i~~~l~~~~~~~-~VlllDEidkl~~~~~~----~------~~~~LL~~LD~~~~~~~~d~~~~~~~~~ 618 (691)
.++|.....+...+..+.... +|+||||+|.+...... + ..+.||..+|. +. ..
T Consensus 224 --~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg---------~~----~~ 288 (644)
T PRK10733 224 --MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG---------FE----GN 288 (644)
T ss_pred --hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc---------cc----CC
Confidence 344555555556666655444 49999999998743211 0 23334433332 21 23
Q ss_pred CceEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHhHH
Q 005548 619 SKVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 619 ~~vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~~~ 665 (691)
.++++|+|||.++.+|+++++ ||+ .+.++.|+.+++.+|++.++.+.
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 579999999999999999997 896 58999999999999999998764
No 75
>PRK04195 replication factor C large subunit; Provisional
Probab=99.42 E-value=8.9e-13 Score=149.09 Aligned_cols=182 Identities=23% Similarity=0.244 Sum_probs=122.6
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhccc
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHR 550 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~ 550 (691)
.++.-.++++|++++++.+..++.-..- + ...++++|+||||+||||+++++|+.++.....++.+.......+.
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~-g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~--- 82 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLK-G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIE--- 82 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhc-C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHH---
Confidence 3344445789999999999888764321 1 2267899999999999999999999999888888765432211111
Q ss_pred CcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC
Q 005548 551 RTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV 630 (691)
Q Consensus 551 ~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~ 630 (691)
..++.... ..........+++|||+|.+......+...+|+..++. .+..+|+++|..
T Consensus 83 -~~i~~~~~----~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-----------------~~~~iIli~n~~ 140 (482)
T PRK04195 83 -RVAGEAAT----SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-----------------AKQPIILTANDP 140 (482)
T ss_pred -HHHHHhhc----cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc-----------------CCCCEEEeccCc
Confidence 00100000 00000113459999999998643222345555555432 345577788988
Q ss_pred CCCCh-hhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 631 ENIPN-PLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 631 ~~l~~-aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..++. .+.+|+..|.|..++..+...+++..+... .+.++++++..|++
T Consensus 141 ~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e----------gi~i~~eaL~~Ia~ 190 (482)
T PRK04195 141 YDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE----------GIECDDEALKEIAE 190 (482)
T ss_pred cccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 88776 788899999999999999999998888642 25578888888765
No 76
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.42 E-value=1.4e-12 Score=140.34 Aligned_cols=188 Identities=22% Similarity=0.294 Sum_probs=123.0
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhccc
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHR 550 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~ 550 (691)
.++.-.++++|++++++.+...+...... .....+++|+||||+|||++++++|+.++..+..+.......
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~-------- 89 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK-------- 89 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC--------
Confidence 45556678999999999988777532221 234567999999999999999999999987765443221110
Q ss_pred CcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHh---hccccccCCceEEEEEe
Q 005548 551 RTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDH---YLDVPIDLSKVLFVCTA 627 (691)
Q Consensus 551 ~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~---~~~~~~~~~~vi~I~Ts 627 (691)
.+.+...+... ..+.++||||++.+.. .....|+..++......+.+. ...+......+++|+++
T Consensus 90 -------~~~l~~~l~~l-~~~~vl~IDEi~~l~~----~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at 157 (328)
T PRK00080 90 -------PGDLAAILTNL-EEGDVLFIDEIHRLSP----VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT 157 (328)
T ss_pred -------hHHHHHHHHhc-ccCCEEEEecHhhcch----HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeec
Confidence 11222333322 3456999999999863 223334443332110000000 00011122457889999
Q ss_pred CCCCCCChhhcCeEE-EEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 628 NVVENIPNPLLDRME-VIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 628 N~~~~l~~aLldR~~-iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
|....+++++.+||. .+.|..|+.++..+|+++..... .+.++++++..|++
T Consensus 158 ~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~----------~~~~~~~~~~~ia~ 210 (328)
T PRK00080 158 TRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL----------GVEIDEEGALEIAR 210 (328)
T ss_pred CCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc----------CCCcCHHHHHHHHH
Confidence 999999999999995 58999999999999999876642 35588888888775
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=7.3e-13 Score=144.45 Aligned_cols=182 Identities=25% Similarity=0.267 Sum_probs=119.2
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE--EeCc--------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF--SVGG-------- 539 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i--~~~~-------- 539 (691)
+.++..+++++|++++++.+...+...+ -++.++|+||+|+||||+|+++|+.+....+.. .|+.
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 4566677799999999999988887432 235589999999999999999999986432100 0000
Q ss_pred ---cchhhhhhcccCcccccccchHHHHHHHh-----cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 540 ---LADVAEIKGHRRTYIGAMPGKMVQCLKNV-----GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 540 ---~~~~~~l~g~~~~~vG~~~~~i~~~l~~~-----~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
..+..++.+.....+ ..+....... .....|++|||++++.. ..+++|+..++.
T Consensus 84 ~~~~~d~~~~~~~~~~~v----~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~----~a~naLLk~lEe---------- 145 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKV----EEMREILDNIYYSPSKSRFKVYLIDEVHMLSR----HSFNALLKTLEE---------- 145 (363)
T ss_pred cCCCCceEEecccccCCH----HHHHHHHHHHhcCcccCCceEEEEEChhhcCH----HHHHHHHHHHhc----------
Confidence 001111110000111 1122222211 11234999999998853 345667766653
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
...++.||++++..+.+.+++.+|+..++|.+++.++..+++...+.+. .+.++++++..+++
T Consensus 146 -----~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~----------g~~i~~~al~~ia~ 208 (363)
T PRK14961 146 -----PPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKE----------SIDTDEYALKLIAY 208 (363)
T ss_pred -----CCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2357788888888888988999999999999999999998888877653 24466777766553
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=6.9e-13 Score=151.92 Aligned_cols=184 Identities=21% Similarity=0.247 Sum_probs=122.4
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE--EEeCcc-------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR--FSVGGL------- 540 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~--i~~~~~------- 540 (691)
+.++..+++++|++++++.+...+.-.++ .+.++|+||+|+||||+|+++|+.++...+. ..|+..
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~rl-----~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLGRL-----HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 35666777999999999999888874332 3458999999999999999999998763210 011110
Q ss_pred ----chhhhhhcccCcccccccchHHHHHHHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 541 ----ADVAEIKGHRRTYIGAMPGKMVQCLKNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 541 ----~~~~~l~g~~~~~vG~~~~~i~~~l~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
.|+.++.+.....+..+. .+...+... .....|+||||++++.. ..+++||..|+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~----~a~NALLKtLEE------------- 145 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSR----HSFNALLKTLEE------------- 145 (647)
T ss_pred cCCCCCceeecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCH----HHHHHHHHHHHc-------------
Confidence 011111111011111111 111221111 12334999999999964 457888887764
Q ss_pred cccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhh
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIF 688 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii 688 (691)
..+++.||++|+....+.+.+++||..+.|..++.++....+.+.+... .+.+++.++..|+
T Consensus 146 --Pp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e----------~i~~e~~aL~~Ia 207 (647)
T PRK07994 146 --PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAE----------QIPFEPRALQLLA 207 (647)
T ss_pred --CCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHH
Confidence 3468889999999999989999999999999999999998888877643 2345566555544
No 79
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=1.4e-12 Score=153.87 Aligned_cols=186 Identities=17% Similarity=0.155 Sum_probs=122.1
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE-E-EeCcc------
Q 005548 469 IRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR-F-SVGGL------ 540 (691)
Q Consensus 469 ~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~-i-~~~~~------ 540 (691)
.+.++..+++++|++++++.+..++...++ .+.+||+||+||||||++++||+.+....+. . -|+..
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri-----~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~ 81 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSGRI-----NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVAL 81 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHH
Confidence 346666777999999999999988874332 3558999999999999999999999753211 0 11110
Q ss_pred -------chhhhhhcccCcccccccchHHHHHH--HhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 541 -------ADVAEIKGHRRTYIGAMPGKMVQCLK--NVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 541 -------~~~~~l~g~~~~~vG~~~~~i~~~l~--~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
.++.++.+.....+..+.. +..... -......|+||||+|++.. ..++.||..|+.
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~----~a~NaLLK~LEE---------- 146 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTP----QGFNALLKIVEE---------- 146 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCH----HHHHHHHHHHhC----------
Confidence 0111111100001111110 111111 1122345999999999964 457788877764
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
...+++||++++..+.|.+.|.+||.++.|..++.++...++.+.+.+. .+.++++++..|++
T Consensus 147 -----pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E----------Gv~id~eal~lLa~ 209 (824)
T PRK07764 147 -----PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE----------GVPVEPGVLPLVIR 209 (824)
T ss_pred -----CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2368889988888888888999999999999999999988888877653 24456666665543
No 80
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6.4e-13 Score=148.09 Aligned_cols=182 Identities=23% Similarity=0.254 Sum_probs=123.5
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE-E-eC---------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF-S-VG--------- 538 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i-~-~~--------- 538 (691)
+.++..+++++|++++++.+.+.+...++ ++.++|+||+|+||||+|+.+|+.++...+.- . |+
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~ri-----~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~ 80 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKI-----PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIK 80 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHh
Confidence 35566677999999999999888775433 46799999999999999999999875432210 0 00
Q ss_pred --ccchhhhhhcccCcccccccchHHHHHHHh-----cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 539 --GLADVAEIKGHRRTYIGAMPGKMVQCLKNV-----GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 539 --~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~-----~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
...++.++.+.....+ ..+......+ .....|++|||++.+.. ...++|+..|+.
T Consensus 81 ~~~~~Dv~eidaas~~~v----ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~----~A~NaLLK~LEe---------- 142 (491)
T PRK14964 81 NSNHPDVIEIDAASNTSV----DDIKVILENSCYLPISSKFKVYIIDEVHMLSN----SAFNALLKTLEE---------- 142 (491)
T ss_pred ccCCCCEEEEecccCCCH----HHHHHHHHHHHhccccCCceEEEEeChHhCCH----HHHHHHHHHHhC----------
Confidence 0011111111111111 1122222221 12334999999998853 346777776653
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
....+.||++++....++..+.+|+..+.|..++.++....+...+.+. .+.++++++..|++
T Consensus 143 -----Pp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~E----------gi~i~~eAL~lIa~ 205 (491)
T PRK14964 143 -----PAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKE----------NIEHDEESLKLIAE 205 (491)
T ss_pred -----CCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2367889999998888988999999999999999999988888877753 35578888877764
No 81
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.41 E-value=6.3e-13 Score=147.65 Aligned_cols=182 Identities=26% Similarity=0.326 Sum_probs=135.7
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeE-------------EEE
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF-------------RFS 536 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~-------------~i~ 536 (691)
++++..+++++|++++++.+...+...++ .+.++|.||.||||||+||.+|+.++.... .|.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 45677778999999999999999986654 366999999999999999999999976531 122
Q ss_pred eCccchhhhhhcccCcccccccchHHHHHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 537 VGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 537 ~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
-+...|+-++.+.....|.. +........ ....|++|||++.++. ...++||.-|+.
T Consensus 84 ~g~~~DviEiDaASn~gVdd----iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~----~afNALLKTLEE---------- 145 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDD----IREIIEKVNYAPSEGRYKVYIIDEVHMLSK----QAFNALLKTLEE---------- 145 (515)
T ss_pred cCCcccchhhhhhhccChHH----HHHHHHHhccCCccccceEEEEecHHhhhH----HHHHHHhccccc----------
Confidence 23333444554444443322 222222221 1334999999999864 567888888875
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
+..+++||++|..+..+|..+++||..+.|..++.++....+..++.++ .+.+.++++..|.+
T Consensus 146 -----PP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E----------~I~~e~~aL~~ia~ 208 (515)
T COG2812 146 -----PPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKE----------GINIEEDALSLIAR 208 (515)
T ss_pred -----CccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhc----------CCccCHHHHHHHHH
Confidence 5689999999999999999999999999999999999888888877753 46677777776654
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=7.4e-13 Score=151.05 Aligned_cols=182 Identities=21% Similarity=0.264 Sum_probs=123.6
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE--EeC---------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF--SVG--------- 538 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i--~~~--------- 538 (691)
+.++.-+.+++|++++++.+..++...+ -++.++|+||+|+||||+|+++|+.++...+.. .|+
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 4566667799999999999999887432 246799999999999999999999986542210 011
Q ss_pred --ccchhhhhhcccCcccccccchHHHHHHHh-----cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 539 --GLADVAEIKGHRRTYIGAMPGKMVQCLKNV-----GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 539 --~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~-----~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
...++.++.+.....+ ..+...+... .....|+||||++.+.. ...+.|+..|+.
T Consensus 84 ~g~~~DvlEidaAs~~gV----d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~----~A~NALLKtLEE---------- 145 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGI----DNIREVLENAQYAPTAGKYKVYIIDEVHMLSK----SAFNAMLKTLEE---------- 145 (709)
T ss_pred ccCccceEEEeccccCCH----HHHHHHHHHHHhhhhhCCcEEEEEECccccCH----HHHHHHHHHHHh----------
Confidence 0111111111111111 1222222211 12234999999998753 346677776653
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..+++.||+++|....+...+++||..+.|..++.++....+.+.+.+. .+.++++++..|++
T Consensus 146 -----Pp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kE----------gi~id~eAL~~Ia~ 208 (709)
T PRK08691 146 -----PPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSE----------KIAYEPPALQLLGR 208 (709)
T ss_pred -----CCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHc----------CCCcCHHHHHHHHH
Confidence 2367889999999999989999999999999999999999888877753 25577888777765
No 83
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.2e-12 Score=149.58 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=122.2
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCe-----E-EE-EeCc---
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF-----F-RF-SVGG--- 539 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~-----~-~i-~~~~--- 539 (691)
+.++..+++++|++++++.+.+++...++ .+.++|+||+|+||||+++++|+.++... + .. -|+.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~rl-----~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQRL-----HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 45666677899999999999998875432 35689999999999999999999987421 0 00 0110
Q ss_pred --------cchhhhhhcccCcccccccchHHHHHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHH
Q 005548 540 --------LADVAEIKGHRRTYIGAMPGKMVQCLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNAN 606 (691)
Q Consensus 540 --------~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~ 606 (691)
..++.++.+.....+ ..+...+.... ....|++|||++.+.. ...+.|+..|+.
T Consensus 84 C~~i~~g~h~D~~eldaas~~~V----d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~----~a~NaLLKtLEE----- 150 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASNRGV----DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN----TAFNAMLKTLEE----- 150 (618)
T ss_pred HHHHHcCCCCceeecCcccccCH----HHHHHHHHHHHhCcccCCceEEEEEChhhCCH----HHHHHHHHhccc-----
Confidence 011111111101111 11222222211 1234999999999864 356777776653
Q ss_pred HHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHH
Q 005548 607 FLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFG 686 (691)
Q Consensus 607 ~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ 686 (691)
..+.+.||++|+....+...+++||..++|..++.++....++..+.+. .+.++++++..
T Consensus 151 ----------PP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~e----------gi~ie~~AL~~ 210 (618)
T PRK14951 151 ----------PPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAE----------NVPAEPQALRL 210 (618)
T ss_pred ----------CCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHH
Confidence 2367889988888888888999999999999999999988888877643 24567777777
Q ss_pred hhh
Q 005548 687 IFR 689 (691)
Q Consensus 687 ii~ 689 (691)
|++
T Consensus 211 La~ 213 (618)
T PRK14951 211 LAR 213 (618)
T ss_pred HHH
Confidence 654
No 84
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=1.8e-12 Score=145.59 Aligned_cols=181 Identities=19% Similarity=0.218 Sum_probs=122.1
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE-----EEeCccc----
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR-----FSVGGLA---- 541 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~-----i~~~~~~---- 541 (691)
.++..+.+++|++++++.+...+...+ -.+.++|+||+||||||+|+++|+.++..... +...+..
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~ 89 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCI 89 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHH
Confidence 556666789999999998887776432 34679999999999999999999999754211 1111111
Q ss_pred --------hhhhhhcccCcccccccchHHHHHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHH
Q 005548 542 --------DVAEIKGHRRTYIGAMPGKMVQCLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFL 608 (691)
Q Consensus 542 --------~~~~l~g~~~~~vG~~~~~i~~~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~ 608 (691)
++.++.......+.. +...+..+. ....|++|||++.+.. ...++|+..|+.
T Consensus 90 ~i~~~~h~Dv~eidaas~~~vd~----Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~----~a~naLLk~LEe------- 154 (507)
T PRK06645 90 SFNNHNHPDIIEIDAASKTSVDD----IRRIIESAEYKPLQGKHKIFIIDEVHMLSK----GAFNALLKTLEE------- 154 (507)
T ss_pred HHhcCCCCcEEEeeccCCCCHHH----HHHHHHHHHhccccCCcEEEEEEChhhcCH----HHHHHHHHHHhh-------
Confidence 111111111111211 222222221 1334999999998853 346667666653
Q ss_pred HhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhh
Q 005548 609 DHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIF 688 (691)
Q Consensus 609 d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii 688 (691)
....++||++++..+.+++++.+|+..+.|..++.++...+++..+.+. .+.++++++..|+
T Consensus 155 --------pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~e----------gi~ie~eAL~~Ia 216 (507)
T PRK06645 155 --------PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQE----------NLKTDIEALRIIA 216 (507)
T ss_pred --------cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHH
Confidence 2367888888888888989999999999999999999999999988753 2557778877766
Q ss_pred h
Q 005548 689 R 689 (691)
Q Consensus 689 ~ 689 (691)
+
T Consensus 217 ~ 217 (507)
T PRK06645 217 Y 217 (507)
T ss_pred H
Confidence 4
No 85
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.38 E-value=3.5e-12 Score=136.56 Aligned_cols=181 Identities=18% Similarity=0.279 Sum_probs=119.8
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhccc
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHR 550 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~ 550 (691)
.++...++++|++++++.+..++.-. ..+..++|+||||+|||++++++++.++.++..+++.. ....
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~------ 82 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRID------ 82 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHH------
Confidence 34444458899999999988887632 12345666999999999999999999887777776543 1111
Q ss_pred CcccccccchHHHHHHHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeC
Q 005548 551 RTYIGAMPGKMVQCLKNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTAN 628 (691)
Q Consensus 551 ~~~vG~~~~~i~~~l~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN 628 (691)
.....+....... .....++++||++.+... +....|...++. + .+++.||+|+|
T Consensus 83 -----~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~---~~~~~L~~~le~---------~------~~~~~~Ilt~n 139 (316)
T PHA02544 83 -----FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA---DAQRHLRSFMEA---------Y------SKNCSFIITAN 139 (316)
T ss_pred -----HHHHHHHHHHHhhcccCCCeEEEEECcccccCH---HHHHHHHHHHHh---------c------CCCceEEEEcC
Confidence 1111111111111 123459999999887321 122333332321 1 25678999999
Q ss_pred CCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 629 VVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 629 ~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
....+.+++.+||..+.|+.|+.+++..++..++...... .....+.++++++..+++
T Consensus 140 ~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~---~~~~~~~i~~~al~~l~~ 197 (316)
T PHA02544 140 NKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGI---LEAEGVEVDMKVLAALVK 197 (316)
T ss_pred ChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHH---HHhcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999998888766554221 122346688888888775
No 86
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.38 E-value=2.9e-12 Score=133.56 Aligned_cols=151 Identities=20% Similarity=0.231 Sum_probs=101.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccc---------------------cccchH
Q 005548 503 QGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIG---------------------AMPGKM 561 (691)
Q Consensus 503 ~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG---------------------~~~~~i 561 (691)
.+.+++|.||||||||++|++||..++.++..+++....+..++.|....+-. +.++.
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 98 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNR- 98 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCch-
Confidence 46789999999999999999999999999999988764444555543211100 01111
Q ss_pred HHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh-c-cccccCCceEEEEEeCCCC-----CCC
Q 005548 562 VQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY-L-DVPIDLSKVLFVCTANVVE-----NIP 634 (691)
Q Consensus 562 ~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~-~-~~~~~~~~vi~I~TsN~~~-----~l~ 634 (691)
+..+...+.++++||++++.. +..+.|++.|+..+.. +.+.- . .......+..+|+|+|... .++
T Consensus 99 ---l~~A~~~g~~lllDEi~r~~~----~~q~~Ll~~Le~~~~~-i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~ 170 (262)
T TIGR02640 99 ---LTLAVREGFTLVYDEFTRSKP----ETNNVLLSVFEEGVLE-LPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQ 170 (262)
T ss_pred ---HHHHHHcCCEEEEcchhhCCH----HHHHHHHHHhcCCeEE-ccCCCCCCceEecCCCCEEEEeeCCccccceeccc
Confidence 222223445999999999854 5677888888752110 00000 0 0000124677999999752 468
Q ss_pred hhhcCeEEEEEEcCCCHHHHHHHHHHHH
Q 005548 635 NPLLDRMEVIAIAGYITDEKMHIARDYL 662 (691)
Q Consensus 635 ~aLldR~~iI~~~~~~~~e~~~I~~~~l 662 (691)
+++.+||..+.+..|+.++..+|+..++
T Consensus 171 ~aL~~R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 171 DALLDRLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred HHHHhhcEEEECCCCCHHHHHHHHHHhh
Confidence 8999999989999999999999988753
No 87
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=3e-12 Score=151.52 Aligned_cols=182 Identities=22% Similarity=0.303 Sum_probs=126.6
Q ss_pred hhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------cCCeEEEEeCccc
Q 005548 472 QKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARAL----------NRKFFRFSVGGLA 541 (691)
Q Consensus 472 ~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l----------~~~~~~i~~~~~~ 541 (691)
++.--+.++|.++...++.+.+.. ....+++|+||||||||+++++||..+ +..++.++++.+.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~ 250 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL 250 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh
Confidence 344445899999988887766642 245679999999999999999999987 3334444432221
Q ss_pred hhhhhhcccCcccccccchHHHHHHHhcc-cCCEEEehhhhhhcccCC--C---CHHHHHHhhcCHHHHHHHHHhhcccc
Q 005548 542 DVAEIKGHRRTYIGAMPGKMVQCLKNVGT-ANPLVLIDEIDKLGRGHA--G---DPASALLELLDPEQNANFLDHYLDVP 615 (691)
Q Consensus 542 ~~~~l~g~~~~~vG~~~~~i~~~l~~~~~-~~~VlllDEidkl~~~~~--~---~~~~~LL~~LD~~~~~~~~d~~~~~~ 615 (691)
.| .+|.|....++...+..+.. .+.|+||||++.+..... + +..+.|...|.
T Consensus 251 -----a~--~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--------------- 308 (731)
T TIGR02639 251 -----AG--TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--------------- 308 (731)
T ss_pred -----hh--ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---------------
Confidence 11 35677777778777776543 345999999998874221 1 12333332221
Q ss_pred ccCCceEEEEEeCCC-----CCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 616 IDLSKVLFVCTANVV-----ENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 616 ~~~~~vi~I~TsN~~-----~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
.+.+.+|++||.. ...+++|.+||..|.+..|+.++..+|++....... ..+ .+.++++++..+++
T Consensus 309 --~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e-~~~-----~v~i~~~al~~~~~ 379 (731)
T TIGR02639 309 --SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYE-EFH-----HVKYSDEALEAAVE 379 (731)
T ss_pred --CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHH-hcc-----CcccCHHHHHHHHH
Confidence 2568889888863 346899999999999999999999999998776532 122 36789999988764
No 88
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2.7e-12 Score=146.26 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=122.2
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE--EeCc--------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF--SVGG-------- 539 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i--~~~~-------- 539 (691)
+.++..+++++|++++++.+..++.-.+ -++.++|+||+|+||||+|+++|+.++...+.. .|+.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 80 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALA 80 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhh
Confidence 4666677799999999999999887432 234589999999999999999999987432110 1110
Q ss_pred -----cchhhhhhcccCcccccccchHHHHHHH--hcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhc
Q 005548 540 -----LADVAEIKGHRRTYIGAMPGKMVQCLKN--VGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYL 612 (691)
Q Consensus 540 -----~~~~~~l~g~~~~~vG~~~~~i~~~l~~--~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~ 612 (691)
..++.++.+.....+..... +...... ......|+||||++.+.. +.+++|+..|+.
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRe-l~~~~~~~P~~~~~KVvIIDEah~Lt~----~A~NALLK~LEE----------- 144 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRE-LRDRAFYAPAQSRYRIFIVDEAHMVTT----AGFNALLKIVEE----------- 144 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHH-HHHHHHhhhhcCCceEEEEECCCcCCH----HHHHHHHHHHhc-----------
Confidence 00111111111111111110 1111111 112345999999999864 457778777763
Q ss_pred cccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 613 DVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 613 ~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..++++||++++....+.+++.+|+..+.|..++.++..+.+..++.+. .+.++++++..|++
T Consensus 145 ----pp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~e----------gi~i~~~al~~Ia~ 207 (584)
T PRK14952 145 ----PPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQE----------GVVVDDAVYPLVIR 207 (584)
T ss_pred ----CCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 3468999998888889989999999999999999999888888877653 24466666666543
No 89
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=8.1e-12 Score=141.17 Aligned_cols=184 Identities=20% Similarity=0.220 Sum_probs=119.2
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE-E-EeCc--------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR-F-SVGG-------- 539 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~-i-~~~~-------- 539 (691)
+.++.-+++++|++++++.+...+...+ -.+.++|+||+|+||||+|+++|+.+...... - .|+.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 4566667789999999999888876432 23458999999999999999999988642210 0 0110
Q ss_pred ---cchhhhhhcccCccccccc-chHHHHHHHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhcc
Q 005548 540 ---LADVAEIKGHRRTYIGAMP-GKMVQCLKNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLD 613 (691)
Q Consensus 540 ---~~~~~~l~g~~~~~vG~~~-~~i~~~l~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~ 613 (691)
..+..++.+. ...|... ..+...+... .....|++|||++++.. +.++.|+..|+.
T Consensus 84 ~~~~~dlieidaa--s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~----~a~naLLK~LEe------------ 145 (546)
T PRK14957 84 NNSFIDLIEIDAA--SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK----QSFNALLKTLEE------------ 145 (546)
T ss_pred cCCCCceEEeecc--cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH----HHHHHHHHHHhc------------
Confidence 0011111110 1111110 1111111111 11334999999999864 456777777763
Q ss_pred ccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 614 VPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 614 ~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..+.++||++|+....+.+++.+||.+++|..++.++....+...+.+. .+.++++++..|++
T Consensus 146 ---pp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e----------gi~~e~~Al~~Ia~ 208 (546)
T PRK14957 146 ---PPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKE----------NINSDEQSLEYIAY 208 (546)
T ss_pred ---CCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2357888888888888888899999999999999999888888877652 24466777766654
No 90
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.3e-11 Score=139.11 Aligned_cols=185 Identities=24% Similarity=0.308 Sum_probs=119.6
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE-EEeCc---------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR-FSVGG--------- 539 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~-i~~~~--------- 539 (691)
+.++..+++++|++++++.+..++.-.. -++.++|+||||+||||+|+++|+.+...... ..|+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR 81 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc
Confidence 4566677799999999999988887432 23557999999999999999999998532100 01110
Q ss_pred --cchhhhhhcccCcccccccchHHHHHHHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhcccc
Q 005548 540 --LADVAEIKGHRRTYIGAMPGKMVQCLKNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVP 615 (691)
Q Consensus 540 --~~~~~~l~g~~~~~vG~~~~~i~~~l~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~ 615 (691)
..++.++.......+..+ ..+...+... .....|++|||++.+.. +..+.|+..++.
T Consensus 82 ~~h~dv~el~~~~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~----~a~naLLk~LEe-------------- 142 (504)
T PRK14963 82 GAHPDVLEIDAASNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSK----SAFNALLKTLEE-------------- 142 (504)
T ss_pred CCCCceEEecccccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCH----HHHHHHHHHHHh--------------
Confidence 001111111000000000 0111111111 12334999999987743 345566665543
Q ss_pred ccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 616 IDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 616 ~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
...+++||+++|....+.+.+.+|+..+.|..++.++....++..+.+. .+.++++++..|++
T Consensus 143 -p~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~e----------gi~i~~~Al~~ia~ 205 (504)
T PRK14963 143 -PPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAE----------GREAEPEALQLVAR 205 (504)
T ss_pred -CCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2357888888898888989999999999999999999999999888753 24567888777764
No 91
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.35 E-value=2.1e-13 Score=132.63 Aligned_cols=119 Identities=28% Similarity=0.496 Sum_probs=77.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhcC----CeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEeh
Q 005548 503 QGKIICLSGPPGVGKTSIGRSIARALNR----KFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLID 578 (691)
Q Consensus 503 ~g~~vlL~GPpGtGKTtLakaLA~~l~~----~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllD 578 (691)
+-.+++|+||+|||||.++++||..+.. ++..++++.+.+..+........+|..++.... ....|+++|
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~------~~~gVVllD 75 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGA------EEGGVVLLD 75 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHH------HHHTEEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeec------cchhhhhhH
Confidence 3457999999999999999999999995 788888877654111110011122222222211 112399999
Q ss_pred hhhhhcccCCC-------CHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC
Q 005548 579 EIDKLGRGHAG-------DPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE 631 (691)
Q Consensus 579 Eidkl~~~~~~-------~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~ 631 (691)
||||+.+..+. ++.+.||++||.. .+.+.. +..++.++++||+|+|...
T Consensus 76 EidKa~~~~~~~~~v~~~~V~~~LL~~le~g---~~~d~~-g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 76 EIDKAHPSNSGGADVSGEGVQNSLLQLLEGG---TLTDSY-GRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp TGGGCSHTTTTCSHHHHHHHHHHHHHHHHHS---EEEETT-CCEEEGTTEEEEEEESSST
T ss_pred HHhhccccccccchhhHHHHHHHHHHHhccc---ceeccc-ceEEEeCCceEEEeccccc
Confidence 99999752211 3688999998863 233333 3567889999999999764
No 92
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.7e-12 Score=145.92 Aligned_cols=185 Identities=22% Similarity=0.212 Sum_probs=120.2
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE--EEeCc--------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR--FSVGG-------- 539 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~--i~~~~-------- 539 (691)
+.++..+++++|++++++.+..++.-.++ .+.++|+||+|+||||+|+++|+.+...... ..|+.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~ri-----~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQENRV-----APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 35666677899999999999888864322 3679999999999999999999999753110 01111
Q ss_pred ---cchhhhhhcccCcccccccchHHHHHHHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 540 ---LADVAEIKGHRRTYIGAMPGKMVQCLKNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 540 ---~~~~~~l~g~~~~~vG~~~~~i~~~l~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
..++.++.+.....+... ..+...+... .....|+||||++++.. +..+.|+..|+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~----~a~naLLk~LEE------------- 145 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTR----EAFNALLKTLEE------------- 145 (624)
T ss_pred cCCCCceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCH----HHHHHHHHHhhc-------------
Confidence 001111111101111111 0111111111 11234999999999853 345677766653
Q ss_pred cccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
...+++||+++|....+...+.+||.++.|..++.++...++...+.+. .+.++++++..|++
T Consensus 146 --P~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~e----------gi~id~eal~lIA~ 208 (624)
T PRK14959 146 --PPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGRE----------GVDYDPAAVRLIAR 208 (624)
T ss_pred --cCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 1357889999998888888899999999999999999998888866542 24467777766654
No 93
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.34 E-value=1e-11 Score=137.80 Aligned_cols=172 Identities=19% Similarity=0.299 Sum_probs=115.0
Q ss_pred HhhhhhccccchHHHHHH---HHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh
Q 005548 471 AQKILDEDHYGLNDVKER---ILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK 547 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~---i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~ 547 (691)
.++...++++|++++... +...+.- ....+++|+|||||||||+|++||+.++..+..++.... ....+.
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~ir 78 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDLR 78 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHHH
Confidence 444455689999988555 6666542 234579999999999999999999999988888775431 111110
Q ss_pred cccCcccccccchHHHHHHHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEE
Q 005548 548 GHRRTYIGAMPGKMVQCLKNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVC 625 (691)
Q Consensus 548 g~~~~~vG~~~~~i~~~l~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~ 625 (691)
.+....... .....++||||++++.. ...+.|+..++. +.+++|+
T Consensus 79 ------------~ii~~~~~~~~~g~~~vL~IDEi~~l~~----~~q~~LL~~le~-----------------~~iilI~ 125 (413)
T PRK13342 79 ------------EVIEEARQRRSAGRRTILFIDEIHRFNK----AQQDALLPHVED-----------------GTITLIG 125 (413)
T ss_pred ------------HHHHHHHHhhhcCCceEEEEechhhhCH----HHHHHHHHHhhc-----------------CcEEEEE
Confidence 111111111 11345999999998853 234455554431 3455665
Q ss_pred Ee--CCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 626 TA--NVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 626 Ts--N~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
++ |....+++++++||.++.|.+++.++...++.+.+.... .++ +.++++++..+++
T Consensus 126 att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~---~~~----i~i~~~al~~l~~ 184 (413)
T PRK13342 126 ATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKE---RGL----VELDDEALDALAR 184 (413)
T ss_pred eCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh---cCC----CCCCHHHHHHHHH
Confidence 44 445578899999999999999999999999998876531 121 3678888887765
No 94
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.9e-12 Score=147.41 Aligned_cols=172 Identities=22% Similarity=0.290 Sum_probs=132.7
Q ss_pred hccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG 548 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g 548 (691)
++++.|+++++..+.+.+.+..+. .+.+++.++|+||||||||..|+++|..+....-.+.+.-- ...+.
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmr-kgaD~-- 340 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMR-KGADC-- 340 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhh-cCchh--
Confidence 458999999999998888776544 57889999999999999999999999998655555543211 11111
Q ss_pred ccCcccccccchHHHHHHHhcccCC-EEEehhhhhhcccC-------CCCHHHHHHhhcCHHHHHHHHHhhccccccCCc
Q 005548 549 HRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGH-------AGDPASALLELLDPEQNANFLDHYLDVPIDLSK 620 (691)
Q Consensus 549 ~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~-------~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~ 620 (691)
-.+|+|.....+...+..+....| |+|+||||.+.+-. +..+++.||..||. +. ..+.
T Consensus 341 -lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdG------------ld-sRgq 406 (1080)
T KOG0732|consen 341 -LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDG------------LD-SRGQ 406 (1080)
T ss_pred -hccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccC------------CC-CCCc
Confidence 257999999999988988887666 99999999776432 22367777777764 22 1368
Q ss_pred eEEEEEeCCCCCCChhhcC--eEE-EEEEcCCCHHHHHHHHHHHHhH
Q 005548 621 VLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEK 664 (691)
Q Consensus 621 vi~I~TsN~~~~l~~aLld--R~~-iI~~~~~~~~e~~~I~~~~l~~ 664 (691)
+++|.+||+++.+++|+++ ||+ .+.|+.++.+.+.+|+..+-.+
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrk 453 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRK 453 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccC
Confidence 9999999999999999976 776 4899999999999999876543
No 95
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.34 E-value=9.7e-12 Score=148.46 Aligned_cols=183 Identities=15% Similarity=0.217 Sum_probs=126.0
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcC----------CeEEEEeCcc
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNR----------KFFRFSVGGL 540 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~----------~~~~i~~~~~ 540 (691)
+++...+.++|.++...++.+.+.. ....+++|+||||||||++++.+|..+.. .++.++++.+
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l 254 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLR------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhc------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh
Confidence 4445556899999988777776643 24457899999999999999999998742 2333333221
Q ss_pred chhhhhhcccCcccccccchHHHHHHHhcc--cCCEEEehhhhhhcccC----CCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 541 ADVAEIKGHRRTYIGAMPGKMVQCLKNVGT--ANPLVLIDEIDKLGRGH----AGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 541 ~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~--~~~VlllDEidkl~~~~----~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
. ....|.|....++...+..... .+.|+||||++.+.... +.+..+.|...|.
T Consensus 255 ------~-ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-------------- 313 (852)
T TIGR03345 255 ------Q-AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-------------- 313 (852)
T ss_pred ------h-cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--------------
Confidence 1 1124667777777777776643 34599999999987421 1223333333222
Q ss_pred cccCCceEEEEEeCCC-----CCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 615 PIDLSKVLFVCTANVV-----ENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~-----~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
.+.+.+|+||+.. ..++++|.+||.+|.+..|+.++...|++.+..... ..+ .+.++++++..++.
T Consensus 314 ---~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e-~~~-----~v~i~d~al~~~~~ 384 (852)
T TIGR03345 314 ---RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLE-KHH-----GVLILDEAVVAAVE 384 (852)
T ss_pred ---CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhh-hcC-----CCeeCHHHHHHHHH
Confidence 2578889888864 347899999999999999999999999866554322 122 37789999988764
No 96
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.8e-12 Score=147.38 Aligned_cols=185 Identities=21% Similarity=0.252 Sum_probs=122.6
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE-E-EeC---------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR-F-SVG--------- 538 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~-i-~~~--------- 538 (691)
++++..+++++|++++++.+...+.... -.+.++|+||+|+||||+++++|+.++...+. . .|+
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence 4566677799999999999998887432 24568999999999999999999998643210 0 000
Q ss_pred --ccchhhhhhcccCcccccccchHHHHHHHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 539 --GLADVAEIKGHRRTYIGAMPGKMVQCLKNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 539 --~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
...++.++.+.....+..+ ..+...+... .....|++|||++.+.. +..++|+..|+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~----~a~naLLk~LEe------------- 145 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLST----NAFNALLKTLEE------------- 145 (576)
T ss_pred cCCCCCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCH----HHHHHHHHHHHc-------------
Confidence 0011111111111111111 0111111111 11234999999998863 457788877764
Q ss_pred cccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
...+++||++||.++.+.+++.+||..+.|..++.++....+...+.+. .+.++++++..|++
T Consensus 146 --pp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~e----------gi~i~~~al~~la~ 208 (576)
T PRK14965 146 --PPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQE----------GISISDAALALVAR 208 (576)
T ss_pred --CCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHh----------CCCCCHHHHHHHHH
Confidence 2368899999999999989999999999999999998888888777653 24566777766654
No 97
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.6e-12 Score=140.22 Aligned_cols=145 Identities=30% Similarity=0.461 Sum_probs=113.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcc------cC-
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGT------AN- 572 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~------~~- 572 (691)
+++.-+.++|+||||||||.+||.|+..|+..--.|. .| .++. .+|||..+.++...|..+.. .+
T Consensus 252 Gi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIV-NG----PeIL---~KYVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 252 GIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIV-NG----PEIL---NKYVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred CccceeeEEEECCCCCChhHHHHHHHHHhcCCCCccc-Cc----HHHH---HHhhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 4556678999999999999999999999986544432 12 1222 58999999998877766532 11
Q ss_pred C--EEEehhhhhhcc--cCCC-------CHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcC--
Q 005548 573 P--LVLIDEIDKLGR--GHAG-------DPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLD-- 639 (691)
Q Consensus 573 ~--VlllDEidkl~~--~~~~-------~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLld-- 639 (691)
. |+++||||.+++ +..+ .+++.||.-+|... . +.++++|.-||+.+.+|+||++
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe------q-------LNNILVIGMTNR~DlIDEALLRPG 390 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE------Q-------LNNILVIGMTNRKDLIDEALLRPG 390 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH------h-------hhcEEEEeccCchhhHHHHhcCCC
Confidence 1 999999999883 2222 27889998888632 1 3699999999999999999998
Q ss_pred eEEE-EEEcCCCHHHHHHHHHHHHhHH
Q 005548 640 RMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 640 R~~i-I~~~~~~~~e~~~I~~~~l~~~ 665 (691)
|+++ +++.-|+..-|.+|++.+..+.
T Consensus 391 RlEVqmEIsLPDE~gRlQIl~IHT~rM 417 (744)
T KOG0741|consen 391 RLEVQMEISLPDEKGRLQILKIHTKRM 417 (744)
T ss_pred ceEEEEEEeCCCccCceEEEEhhhhhh
Confidence 9998 8999999999999999887654
No 98
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=2.3e-11 Score=139.17 Aligned_cols=182 Identities=23% Similarity=0.254 Sum_probs=120.9
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE--EEeCcc-------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR--FSVGGL------- 540 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~--i~~~~~------- 540 (691)
+.++..+++++|++++++.+.+.+...+ .++.++|+||+|+|||++|+.+|+.+...... ..|+..
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 4566677799999999999988887432 34679999999999999999999998643210 011100
Q ss_pred ----chhhhhhcccCcccccccchHHHHHHHh-----cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 541 ----ADVAEIKGHRRTYIGAMPGKMVQCLKNV-----GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 541 ----~~~~~l~g~~~~~vG~~~~~i~~~l~~~-----~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
.++.++.+. ...| ...+......+ .....|++|||++.+.. +..++|+..|+.
T Consensus 84 ~g~~~dv~eidaa--s~~~--vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~----~a~naLLKtLEe---------- 145 (559)
T PRK05563 84 NGSLMDVIEIDAA--SNNG--VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST----GAFNALLKTLEE---------- 145 (559)
T ss_pred cCCCCCeEEeecc--ccCC--HHHHHHHHHHHhhCcccCCeEEEEEECcccCCH----HHHHHHHHHhcC----------
Confidence 011111110 0001 11122222221 11234999999998853 356777776653
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
...+++||++++.++.+++.+.+|+..+.|..++.++....+...+.+. .+.++++++..+++
T Consensus 146 -----pp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~e----------gi~i~~~al~~ia~ 208 (559)
T PRK05563 146 -----PPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKE----------GIEYEDEALRLIAR 208 (559)
T ss_pred -----CCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2367889988888899989999999999999999999888888877642 24466666666553
No 99
>PHA02244 ATPase-like protein
Probab=99.31 E-value=8e-11 Score=125.58 Aligned_cols=138 Identities=22% Similarity=0.231 Sum_probs=89.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhh
Q 005548 502 SQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEID 581 (691)
Q Consensus 502 ~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEid 581 (691)
..+.+++|+||||||||+++++||..++.+++.++ +..+...+.|..........+ .+..+.....+++|||++
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In--~l~d~~~L~G~i~~~g~~~dg----pLl~A~~~GgvLiLDEId 190 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN--AIMDEFELKGFIDANGKFHET----PFYEAFKKGGLFFIDEID 190 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe--cChHHHhhcccccccccccch----HHHHHhhcCCEEEEeCcC
Confidence 35678999999999999999999999999998886 322333333321111111122 233334456699999999
Q ss_pred hhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC-----------CCCChhhcCeEEEEEEcCCC
Q 005548 582 KLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV-----------ENIPNPLLDRMEVIAIAGYI 650 (691)
Q Consensus 582 kl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~-----------~~l~~aLldR~~iI~~~~~~ 650 (691)
.+.+ +....|...++.. +.+...+......++.+|+|+|.. ..++++++|||..|.|..++
T Consensus 191 ~a~p----~vq~~L~~lLd~r----~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~ 262 (383)
T PHA02244 191 ASIP----EALIIINSAIANK----FFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDE 262 (383)
T ss_pred cCCH----HHHHHHHHHhccC----eEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCc
Confidence 8854 4455666666531 111111111123678999999973 45789999999999988877
Q ss_pred HHH
Q 005548 651 TDE 653 (691)
Q Consensus 651 ~~e 653 (691)
..|
T Consensus 263 ~~E 265 (383)
T PHA02244 263 KIE 265 (383)
T ss_pred HHH
Confidence 433
No 100
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=1.3e-11 Score=140.19 Aligned_cols=181 Identities=19% Similarity=0.205 Sum_probs=118.5
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE--EeCcc-------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF--SVGGL------- 540 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i--~~~~~------- 540 (691)
+.++..+++++|++++++.+...+...+ -++.++|+||+|+||||+|+++|+.++...+.. .|+..
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~ 83 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEID 83 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 3555666789999999999988887433 235689999999999999999999996532210 11110
Q ss_pred ----chhhhhhcccCcccccccchHHHHHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 541 ----ADVAEIKGHRRTYIGAMPGKMVQCLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 541 ----~~~~~l~g~~~~~vG~~~~~i~~~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
.+..++.+.....+ ..+...+..+. ....|++|||++++.. ...++|+..|+.
T Consensus 84 ~~~~~d~~ei~~~~~~~v----d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~----~a~naLLK~LEe---------- 145 (527)
T PRK14969 84 SGRFVDLIEVDAASNTQV----DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK----SAFNAMLKTLEE---------- 145 (527)
T ss_pred cCCCCceeEeeccccCCH----HHHHHHHHHHhhCcccCCceEEEEcCcccCCH----HHHHHHHHHHhC----------
Confidence 01111110000001 11222222211 1234999999998863 346777777653
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIF 688 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii 688 (691)
..++++||++|+....+.+.+++||..++|..++.++....+.+.+.+. | +.++++++..|+
T Consensus 146 -----pp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~e-----g-----i~~~~~al~~la 207 (527)
T PRK14969 146 -----PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQE-----N-----IPFDATALQLLA 207 (527)
T ss_pred -----CCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-----C-----CCCCHHHHHHHH
Confidence 2367888888888888888899999999999999999888888877643 1 345666665554
No 101
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.29 E-value=8.7e-12 Score=131.60 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=104.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCccc--ccc-cchHHHHHHHhcccCCEEEehh
Q 005548 503 QGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYI--GAM-PGKMVQCLKNVGTANPLVLIDE 579 (691)
Q Consensus 503 ~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~v--G~~-~~~i~~~l~~~~~~~~VlllDE 579 (691)
.+++++|.||||||||++++.||..++.++.+|++.......++.|.....+ |.. .......+..+...+.++++||
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDE 142 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDE 142 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEech
Confidence 3578999999999999999999999999999999988766667777532111 110 0001122333444566899999
Q ss_pred hhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC------------CCChhhcCeEEE-EEE
Q 005548 580 IDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE------------NIPNPLLDRMEV-IAI 646 (691)
Q Consensus 580 idkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~------------~l~~aLldR~~i-I~~ 646 (691)
++.+.+ +..+.|..+||....-.+.+....+. ......+|+|+|..+ .++++++|||.+ +.+
T Consensus 143 in~a~p----~~~~~L~~lLE~~~~l~i~~~~~~i~-~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~ 217 (327)
T TIGR01650 143 YDAGRP----DVMFVIQRVLEAGGKLTLLDQNRVIR-AHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTL 217 (327)
T ss_pred hhccCH----HHHHHHHHHhccCCeEEECCCceEec-CCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeC
Confidence 998843 56677777776310000111111111 234788999999854 378999999975 689
Q ss_pred cCCCHHHHHHHHHHH
Q 005548 647 AGYITDEKMHIARDY 661 (691)
Q Consensus 647 ~~~~~~e~~~I~~~~ 661 (691)
..++.++..+|+...
T Consensus 218 ~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 218 NYLEHDNEAAIVLAK 232 (327)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999988888764
No 102
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.29 E-value=1e-11 Score=128.82 Aligned_cols=174 Identities=18% Similarity=0.266 Sum_probs=109.9
Q ss_pred ccccchHHHHHH---HHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC---eEEEEeCc--cchhhhhhc
Q 005548 477 EDHYGLNDVKER---ILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRK---FFRFSVGG--LADVAEIKG 548 (691)
Q Consensus 477 ~~i~Gl~~vk~~---i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~---~~~i~~~~--~~~~~~l~g 548 (691)
.+.+|++++.-. +...+. .++-..++|+|||||||||||+.|+.....+ |++++... ..++..+..
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ie------q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIE------QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred HHhcchhhhcCcchHHHHHHH------cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHH
Confidence 366777765432 122222 2233569999999999999999999988766 33333322 112222111
Q ss_pred ccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEe-
Q 005548 549 HRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTA- 627 (691)
Q Consensus 549 ~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~Ts- 627 (691)
.- +..........|+|||||+++.+..+ ..||-.+ +.+.+++|.+|
T Consensus 212 -----------~a-q~~~~l~krkTilFiDEiHRFNksQQ----D~fLP~V-----------------E~G~I~lIGATT 258 (554)
T KOG2028|consen 212 -----------QA-QNEKSLTKRKTILFIDEIHRFNKSQQ----DTFLPHV-----------------ENGDITLIGATT 258 (554)
T ss_pred -----------HH-HHHHhhhcceeEEEeHHhhhhhhhhh----hccccee-----------------ccCceEEEeccc
Confidence 01 11111223445999999999876432 2333332 23667778643
Q ss_pred -CCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHH---hcCCCCCceeeCHHHHHHhhh
Q 005548 628 -NVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTRE---ACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 628 -N~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~---~~~l~~~~l~is~~~i~~ii~ 689 (691)
|....+..+|++||.++.+..++.++...|+.+-+...... -.++......+.+.+|+++..
T Consensus 259 ENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ 324 (554)
T KOG2028|consen 259 ENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAY 324 (554)
T ss_pred CCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHH
Confidence 56677889999999999999999999999999866533221 224554456688999988764
No 103
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.28 E-value=2.3e-11 Score=138.62 Aligned_cols=196 Identities=19% Similarity=0.232 Sum_probs=121.4
Q ss_pred hhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------cCCeEEEEeCcc-
Q 005548 472 QKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARAL----------NRKFFRFSVGGL- 540 (691)
Q Consensus 472 ~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l----------~~~~~~i~~~~~- 540 (691)
++..+++++|+++..+.+...+. .+.+.+++|+||||||||++|+++...+ +.++..+++...
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~ 133 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALC------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTAR 133 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHh------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccccc
Confidence 33444578999999888876543 1345789999999999999999998753 245777776531
Q ss_pred -ch---hhhhhcc--cCccccc-----c--cchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHH--
Q 005548 541 -AD---VAEIKGH--RRTYIGA-----M--PGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNA-- 605 (691)
Q Consensus 541 -~~---~~~l~g~--~~~~vG~-----~--~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~-- 605 (691)
.+ ...+.+. ...|.|. . ++.....+. ...++++||||++.++. +.++.|+..|+.....
T Consensus 134 ~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~--~a~gG~L~IdEI~~L~~----~~q~~LL~~Le~~~~~~~ 207 (531)
T TIGR02902 134 FDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT--RAHGGVLFIDEIGELHP----VQMNKLLKVLEDRKVFLD 207 (531)
T ss_pred CCccccchhhcCCcccchhccccccccCCcccccCchhh--ccCCcEEEEechhhCCH----HHHHHHHHHHHhCeeeec
Confidence 11 0112221 1111111 0 010011112 22456999999999964 4567777776542110
Q ss_pred ------------HHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCC
Q 005548 606 ------------NFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIK 673 (691)
Q Consensus 606 ------------~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~ 673 (691)
.....+.....+..-.++++|+|.++.+++++.+||..+.|.+++.++...|+++++.+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~-------- 279 (531)
T TIGR02902 208 SAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKI-------- 279 (531)
T ss_pred cccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHc--------
Confidence 000000011112223455667788999999999999999999999999999999988752
Q ss_pred CCceeeCHHHHHHhhh
Q 005548 674 PEQKITAGKQGFGIFR 689 (691)
Q Consensus 674 ~~~l~is~~~i~~ii~ 689 (691)
.+.+++++++.|.+
T Consensus 280 --~i~is~~al~~I~~ 293 (531)
T TIGR02902 280 --GINLEKHALELIVK 293 (531)
T ss_pred --CCCcCHHHHHHHHH
Confidence 25578888776543
No 104
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=1.8e-11 Score=141.20 Aligned_cols=167 Identities=25% Similarity=0.343 Sum_probs=113.2
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE---EeCccc-----
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF---SVGGLA----- 541 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i---~~~~~~----- 541 (691)
+.++..+++++|++.+++.+...+.-.+ -.+.++|+||+|+|||++|+++|+.+....... .|+...
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 4566677799999999999988887432 246689999999999999999999986532111 111000
Q ss_pred --hhhhhhcccCcccccccchHHHHHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 542 --DVAEIKGHRRTYIGAMPGKMVQCLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 542 --~~~~l~g~~~~~vG~~~~~i~~~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
++.++.+ ....| ...+........ ....|++|||++.+.. +.+++|+..|+.
T Consensus 86 ~~Dvieida--asn~~--vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~----~A~NALLKtLEE------------- 144 (725)
T PRK07133 86 SLDIIEMDA--ASNNG--VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK----SAFNALLKTLEE------------- 144 (725)
T ss_pred CCcEEEEec--cccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH----HHHHHHHHHhhc-------------
Confidence 0000100 00011 111222221111 1234999999999864 356777777764
Q ss_pred cccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhH
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEK 664 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~ 664 (691)
....++||++++.++.+++++.+||..+.|.+++.++....+...+.+
T Consensus 145 --PP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k 192 (725)
T PRK07133 145 --PPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEK 192 (725)
T ss_pred --CCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH
Confidence 236788898888889998899999999999999999998888887764
No 105
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=3.7e-11 Score=136.04 Aligned_cols=185 Identities=18% Similarity=0.228 Sum_probs=119.7
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeE-EE-EeCccc------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF-RF-SVGGLA------ 541 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~-~i-~~~~~~------ 541 (691)
+.++..+++++|++++++.+...+.-.+ -++.++|+||+|+||||+|+++|+.+..... .. .|+...
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4566677799999999999988876332 2366999999999999999999999853211 01 111110
Q ss_pred -----hhhhhhcccCcccccccchHHHHHHHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 542 -----DVAEIKGHRRTYIGAMPGKMVQCLKNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 542 -----~~~~l~g~~~~~vG~~~~~i~~~l~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
+..++.+.....++.. ..+...+... .....|++|||++.+.. +..++|+..|+.
T Consensus 84 ~~~h~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~----~A~NaLLKtLEE------------- 145 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLST----SAWNALLKTLEE------------- 145 (605)
T ss_pred cCCCCceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCH----HHHHHHHHHHHh-------------
Confidence 1111111000111111 1111111111 11234999999998853 346677777664
Q ss_pred cccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
....++||++++.+..+.+++.+||..+.|..++.++....+...+.+. .+.++++++..++.
T Consensus 146 --Pp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~ke----------gi~Is~eal~~La~ 208 (605)
T PRK05896 146 --PPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKE----------KIKIEDNAIDKIAD 208 (605)
T ss_pred --CCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2357888888888889988999999999999999999998888877642 24466666666543
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=2.5e-11 Score=139.07 Aligned_cols=182 Identities=21% Similarity=0.262 Sum_probs=122.0
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE------EeCccch-
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF------SVGGLAD- 542 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i------~~~~~~~- 542 (691)
+.++..+++++|++++++.+...+...+ -.+.++|+||+|+||||+|+++|+.+....... ...+...
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 4566667799999999999999887442 245799999999999999999999987542111 1112111
Q ss_pred -----------hhhhhcccCcccccccchHHHHHHHh---c--ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHH
Q 005548 543 -----------VAEIKGHRRTYIGAMPGKMVQCLKNV---G--TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNAN 606 (691)
Q Consensus 543 -----------~~~l~g~~~~~vG~~~~~i~~~l~~~---~--~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~ 606 (691)
+.++... ...|. ..+......+ . ....|+||||++.+.. ...++|+..|+.
T Consensus 92 C~~i~~g~h~Dv~e~~a~--s~~gv--d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~----~a~naLLKtLEe----- 158 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAA--SHTGV--DDIREIIESVRYRPVSARYKVYIIDEVHMLST----AAFNALLKTLEE----- 158 (598)
T ss_pred HHHHhcCCCCceEEeccc--ccCCH--HHHHHHHHHHHhchhcCCcEEEEEEChHhCCH----HHHHHHHHHHHh-----
Confidence 1011000 11111 1122222111 1 1234999999998853 346677766653
Q ss_pred HHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHH
Q 005548 607 FLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFG 686 (691)
Q Consensus 607 ~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ 686 (691)
....++||++++..+.+.+.+.+||..+.|..++.++....+...+.+. .+.++++++..
T Consensus 159 ----------Pp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~ke----------gi~i~~eAl~l 218 (598)
T PRK09111 159 ----------PPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKE----------GVEVEDEALAL 218 (598)
T ss_pred ----------CCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHH
Confidence 2367888888888888888999999999999999999998888877643 24566777766
Q ss_pred hhh
Q 005548 687 IFR 689 (691)
Q Consensus 687 ii~ 689 (691)
|++
T Consensus 219 Ia~ 221 (598)
T PRK09111 219 IAR 221 (598)
T ss_pred HHH
Confidence 654
No 107
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.27 E-value=2.1e-11 Score=131.39 Aligned_cols=161 Identities=28% Similarity=0.368 Sum_probs=108.4
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhccc
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHR 550 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~ 550 (691)
....+...++|.++++..+...+. .+.+++|.||||||||++++++|..++.++.+|.|.......++.|..
T Consensus 18 ~~~~~~~~~~g~~~~~~~~l~a~~--------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 18 IRSELEKVVVGDEEVIELALLALL--------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred HHhhcCCeeeccHHHHHHHHHHHH--------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 445555678888888777766665 468999999999999999999999999999999997655555555431
Q ss_pred --------CcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhcc-ccccCCce
Q 005548 551 --------RTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLD-VPIDLSKV 621 (691)
Q Consensus 551 --------~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~-~~~~~~~v 621 (691)
....-+.++.+... .. +++++|||++..+ ...++|++.|+..+.. -.... .... ...
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~----~~--~ill~DEInra~p----~~q~aLl~~l~e~~vt---v~~~~~~~~~-~~f 155 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAA----VR--VILLLDEINRAPP----EVQNALLEALEERQVT---VPGLTTIRLP-PPF 155 (329)
T ss_pred hHhhhhccCCeEEEecCCcccc----cc--eEEEEeccccCCH----HHHHHHHHHHhCcEEE---ECCcCCcCCC-CCC
Confidence 11111122211111 11 4999999999854 5688999988763221 11111 1111 467
Q ss_pred EEEEEeC-----CCCCCChhhcCeEE-EEEEcCCCHHH
Q 005548 622 LFVCTAN-----VVENIPNPLLDRME-VIAIAGYITDE 653 (691)
Q Consensus 622 i~I~TsN-----~~~~l~~aLldR~~-iI~~~~~~~~e 653 (691)
++|+|+| ....+++|++|||. .+.+..+..++
T Consensus 156 ~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 156 IVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred EEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchH
Confidence 8888889 44568999999995 46777663443
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.26 E-value=2.2e-11 Score=142.31 Aligned_cols=180 Identities=18% Similarity=0.278 Sum_probs=115.3
Q ss_pred HhhhhhccccchHHHHH---HHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh
Q 005548 471 AQKILDEDHYGLNDVKE---RILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK 547 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~---~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~ 547 (691)
.++...++++|++++.. .+...+.. ....+++|+|||||||||+|++|++.++..+..++... ....++.
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~-~~i~dir 94 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-AGVKDLR 94 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh-hhhHHHH
Confidence 33444457889998874 34444432 23457999999999999999999999887776665431 1111110
Q ss_pred cccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEe
Q 005548 548 GHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTA 627 (691)
Q Consensus 548 g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~Ts 627 (691)
.........+.. .....++||||++.+.. ...+.|+..++. +.+++|+++
T Consensus 95 --------~~i~~a~~~l~~-~~~~~IL~IDEIh~Ln~----~qQdaLL~~lE~-----------------g~IiLI~aT 144 (725)
T PRK13341 95 --------AEVDRAKERLER-HGKRTILFIDEVHRFNK----AQQDALLPWVEN-----------------GTITLIGAT 144 (725)
T ss_pred --------HHHHHHHHHhhh-cCCceEEEEeChhhCCH----HHHHHHHHHhcC-----------------ceEEEEEec
Confidence 000011011111 11234999999998854 223455544431 345666544
Q ss_pred --CCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 628 --NVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 628 --N~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
|....+++++.+|+.++.|++++.++...++++++..... +.....+.++++++..|++.
T Consensus 145 Tenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~---~~g~~~v~I~deaL~~La~~ 206 (725)
T PRK13341 145 TENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKER---GYGDRKVDLEPEAEKHLVDV 206 (725)
T ss_pred CCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHh---hcCCcccCCCHHHHHHHHHh
Confidence 4445678899999999999999999999999998875321 22234578999999998763
No 109
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.2e-11 Score=134.12 Aligned_cols=167 Identities=26% Similarity=0.362 Sum_probs=127.4
Q ss_pred ccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcc
Q 005548 477 EDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGH 549 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~ 549 (691)
.++.|+......+.+.+.+.... +++.++.++++||||+|||.+++++|+..+..+..++...+.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli-------- 255 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELI-------- 255 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHH--------
Confidence 46677777666666665554222 678899999999999999999999999999777777654432
Q ss_pred cCcccccccchHHHHHHHhcccC-C-EEEehhhhhhcccCCC------CHHHHHHhhcCHHHHHHHHHhhccccccCCce
Q 005548 550 RRTYIGAMPGKMVQCLKNVGTAN-P-LVLIDEIDKLGRGHAG------DPASALLELLDPEQNANFLDHYLDVPIDLSKV 621 (691)
Q Consensus 550 ~~~~vG~~~~~i~~~l~~~~~~~-~-VlllDEidkl~~~~~~------~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~v 621 (691)
+++.|.....+...|..+.... | ++|+||+|.+.+.... .....|+..+| ... ..+++
T Consensus 256 -~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~d---------g~~----~~~~v 321 (693)
T KOG0730|consen 256 -SKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLD---------GLK----PDAKV 321 (693)
T ss_pred -HhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHh---------hCc----CcCcE
Confidence 4677888888888888887755 5 9999999999853322 12333444333 332 23689
Q ss_pred EEEEEeCCCCCCChhhcC-eEEE-EEEcCCCHHHHHHHHHHHHhHH
Q 005548 622 LFVCTANVVENIPNPLLD-RMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 622 i~I~TsN~~~~l~~aLld-R~~i-I~~~~~~~~e~~~I~~~~l~~~ 665 (691)
++|.++|+++.|++++.+ ||+. +.+.-|+..++.+|++.+.++.
T Consensus 322 ivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~ 367 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM 367 (693)
T ss_pred EEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc
Confidence 999999999999999986 9975 8999999999999999988764
No 110
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=2.7e-11 Score=138.24 Aligned_cols=182 Identities=22% Similarity=0.227 Sum_probs=121.4
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE--EEeCcc-------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR--FSVGGL------- 540 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~--i~~~~~------- 540 (691)
+.++..+++++|++++++.+...+.-.. -++.++|+||+|+||||+|+++|+.+....+. ..|+..
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 4566677799999999999998887432 34569999999999999999999998643110 011100
Q ss_pred ----chhhhhhcccCcccccccchHHHHHH---H--hcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 541 ----ADVAEIKGHRRTYIGAMPGKMVQCLK---N--VGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 541 ----~~~~~l~g~~~~~vG~~~~~i~~~l~---~--~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
.++..+.|.....+ +.+..... . ......|++|||++.+.. ...++|+..++.
T Consensus 84 ~~~~~dv~~idgas~~~v----ddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~----~a~naLLK~LEe---------- 145 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSV----QDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN----SAFNALLKTIEE---------- 145 (563)
T ss_pred cCCCCCeEEecCcccCCH----HHHHHHHHHHHhchhcCCCEEEEEEChhhcCH----HHHHHHHHhhcc----------
Confidence 00111111100111 12222211 1 112344999999998853 346677766653
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
....++||++++....+.+++.+|+..+.|..++.++..+.+...+.+. .+.++++++..|++
T Consensus 146 -----pp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~e----------gi~id~eAl~lLa~ 208 (563)
T PRK06647 146 -----PPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLED----------QIKYEDEALKWIAY 208 (563)
T ss_pred -----CCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2367889888888888988999999999999999999888887766542 25577888877764
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=7.3e-11 Score=132.84 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=121.2
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE-EEeCccc-------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR-FSVGGLA------- 541 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~-i~~~~~~------- 541 (691)
+.++.-+++++|++++++.+...+.-.. -++.++|+||+|+||||+|+++|+.+....+. ....+..
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 4566667799999999999998886432 34567999999999999999999998432110 0000000
Q ss_pred -----hhhhhhcccCcccccccchHHHHHHHh-----cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 542 -----DVAEIKGHRRTYIGAMPGKMVQCLKNV-----GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 542 -----~~~~l~g~~~~~vG~~~~~i~~~l~~~-----~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
++.++.+.....+ ..+....... .....|++|||++.+.. +.+++|+..|+.
T Consensus 82 ~~~h~dv~eldaas~~gI----d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~----~A~NALLK~LEE---------- 143 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGI----DDIRELIEQTKYKPSMARFKIFIIDEVHMLTK----EAFNALLKTLEE---------- 143 (535)
T ss_pred hcCCCeEEEeccccccCH----HHHHHHHHHHhhCcccCCeEEEEEECcccCCH----HHHHHHHHHHhh----------
Confidence 0000000000001 1222222211 11234999999998853 457788877764
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..+++.||++++....+.+++.+|+..++|.+++.++....+...+.+. .+.++++++..|++
T Consensus 144 -----pp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~E----------Gi~i~~~Al~~Ia~ 206 (535)
T PRK08451 144 -----PPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKE----------GVSYEPEALEILAR 206 (535)
T ss_pred -----cCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2367888888888889989999999999999999999888888777653 24567777777664
No 112
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.6e-11 Score=138.08 Aligned_cols=185 Identities=17% Similarity=0.223 Sum_probs=117.2
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE--EeCc--------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF--SVGG-------- 539 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i--~~~~-------- 539 (691)
+.++..+.+++|++++++.+...+.-.. -++.++|+||+|+||||+|+.+|+.++.....- .|+.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 3556667789999999999988886432 235689999999999999999999986321100 0110
Q ss_pred ---cchhhhhhcccCcccccccchHHHHHHHhc--ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 540 ---LADVAEIKGHRRTYIGAMPGKMVQCLKNVG--TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 540 ---~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~--~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
..++.++.+.....+... ..+........ ....|+++||++.+.. +..++|+..|+.
T Consensus 84 ~g~~~d~~eidaas~~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~----~a~naLLk~LEe------------- 145 (486)
T PRK14953 84 KGSFPDLIEIDAASNRGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTK----EAFNALLKTLEE------------- 145 (486)
T ss_pred cCCCCcEEEEeCccCCCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCH----HHHHHHHHHHhc-------------
Confidence 011111111000001000 01111111111 1234999999998853 345666666543
Q ss_pred cccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 615 PIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
....++||+++|..+.+++++.+|+..+.|.+++.++....+...+... | +.++++++..|+.
T Consensus 146 --pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~e-----g-----i~id~~al~~La~ 208 (486)
T PRK14953 146 --PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEE-----K-----IEYEEKALDLLAQ 208 (486)
T ss_pred --CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHc-----C-----CCCCHHHHHHHHH
Confidence 2356788888888888888999999999999999999998888877753 2 4466666666543
No 113
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.25 E-value=7.8e-11 Score=128.11 Aligned_cols=182 Identities=25% Similarity=0.300 Sum_probs=117.3
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE--EEeCc--------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR--FSVGG-------- 539 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~--i~~~~-------- 539 (691)
+.++..+++++|++.+++.+...+.-. ..++.++|+||||+|||++++++++.+...... -.|+.
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 456667778999999999998887633 234678999999999999999999998543110 00100
Q ss_pred ---cchhhhhhcccCcccccccchHHHHHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 540 ---LADVAEIKGHRRTYIGAMPGKMVQCLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 540 ---~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
..+...+.+. ...+ ...+......+. ....|+++||++.+.. +..+.|+..++.
T Consensus 82 ~~~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~----~~~~~Ll~~le~---------- 143 (355)
T TIGR02397 82 SGSSLDVIEIDAA--SNNG--VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK----SAFNALLKTLEE---------- 143 (355)
T ss_pred cCCCCCEEEeecc--ccCC--HHHHHHHHHHHhcCcccCCceEEEEeChhhcCH----HHHHHHHHHHhC----------
Confidence 0000000000 0000 111222222211 1234999999998853 335566655542
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
...+++||+++|..+.+.+++.+|+..+.|.+++.++...++..++.+. | +.++++++..++.
T Consensus 144 -----~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~-----g-----~~i~~~a~~~l~~ 206 (355)
T TIGR02397 144 -----PPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKE-----G-----IKIEDEALELIAR 206 (355)
T ss_pred -----CccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHc-----C-----CCCCHHHHHHHHH
Confidence 1357888888888887778999999999999999999999999888753 2 4466777766553
No 114
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=4.6e-11 Score=133.49 Aligned_cols=182 Identities=19% Similarity=0.234 Sum_probs=117.3
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE---EeCcc------
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF---SVGGL------ 540 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i---~~~~~------ 540 (691)
+.++..+++++|++++++.+...+.... -++.++|+||+|+|||++|+++|+.+......- .|+..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 3556667799999999999988886432 245699999999999999999999985431100 01000
Q ss_pred -----chhhhhhcccCcccccccchHH---HHHHH--hcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHh
Q 005548 541 -----ADVAEIKGHRRTYIGAMPGKMV---QCLKN--VGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDH 610 (691)
Q Consensus 541 -----~~~~~l~g~~~~~vG~~~~~i~---~~l~~--~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~ 610 (691)
.+...+.|. ...|. ..+. ..+.. ......|+++||++++.. +..+.|+..++.
T Consensus 85 ~~~~~~d~~~i~g~--~~~gi--d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~----~~~n~LLk~lEe--------- 147 (451)
T PRK06305 85 SSGTSLDVLEIDGA--SHRGI--EDIRQINETVLFTPSKSRYKIYIIDEVHMLTK----EAFNSLLKTLEE--------- 147 (451)
T ss_pred hcCCCCceEEeecc--ccCCH--HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH----HHHHHHHHHhhc---------
Confidence 001111110 01110 1111 11111 112334999999999863 345666666653
Q ss_pred hccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 611 YLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 611 ~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
....++||+++|....+.+++.+|+.++.|..++.++....+...+.+. .+.++++++..|+.
T Consensus 148 ------p~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e----------g~~i~~~al~~L~~ 210 (451)
T PRK06305 148 ------PPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE----------GIETSREALLPIAR 210 (451)
T ss_pred ------CCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2357888888888888888999999999999999999888887776542 24466666666553
No 115
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.24 E-value=1.7e-11 Score=120.48 Aligned_cols=180 Identities=21% Similarity=0.261 Sum_probs=114.7
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh
Q 005548 468 VIRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK 547 (691)
Q Consensus 468 ~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~ 547 (691)
+++.+++--.+|+|.++...++.-+..-. .-++++|.||||+||||-+.+||+.+--+.+.= .+-++.
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke------~vLELN 85 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLARELLGDSYKE------AVLELN 85 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhh------Hhhhcc
Confidence 34566666779999999998887666533 346899999999999999999998873221110 011111
Q ss_pred cccCcccccccchHHHHHHHhcc----cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEE
Q 005548 548 GHRRTYIGAMPGKMVQCLKNVGT----ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLF 623 (691)
Q Consensus 548 g~~~~~vG~~~~~i~~~l~~~~~----~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~ 623 (691)
......+..+..++..+.+.... ...|+++||+|.+.. +...+|-..++ .| .+.+.|
T Consensus 86 ASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~----gAQQAlRRtME---------iy------S~ttRF 146 (333)
T KOG0991|consen 86 ASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA----GAQQALRRTME---------IY------SNTTRF 146 (333)
T ss_pred CccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh----HHHHHHHHHHH---------HH------cccchh
Confidence 11111222222333333332222 234999999999864 23444444433 22 245778
Q ss_pred EEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhh
Q 005548 624 VCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIF 688 (691)
Q Consensus 624 I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii 688 (691)
.+++|..+.+-+++.+||.+++|..++..+...-+...... +.+.++++.++.++
T Consensus 147 alaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~----------Ekv~yt~dgLeaii 201 (333)
T KOG0991|consen 147 ALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKA----------EKVNYTDDGLEAII 201 (333)
T ss_pred hhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHH----------hCCCCCcchHHHhh
Confidence 99999999988999999999999999887655444443332 34667777777665
No 116
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=4.2e-11 Score=131.13 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=104.4
Q ss_pred hccccchHHHHHHHHHHHHhcccc----CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch--hhhhhc-
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLR----GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD--VAEIKG- 548 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~----~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~--~~~l~g- 548 (691)
+++++|++++++.+...+...... +..-++.++|+||+|+|||++|+++|+.+......-...|... ..-..|
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 458999999999999988754311 1123567999999999999999999998754321000001000 000000
Q ss_pred cc--------CcccccccchHHHHHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhcccc
Q 005548 549 HR--------RTYIGAMPGKMVQCLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVP 615 (691)
Q Consensus 549 ~~--------~~~vG~~~~~i~~~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~ 615 (691)
|+ ...++ -..+......+. ....|+||||+|++.. ..++.|+..|+.
T Consensus 84 hpD~~~i~~~~~~i~--i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~----~aanaLLk~LEe-------------- 143 (394)
T PRK07940 84 HPDVRVVAPEGLSIG--VDEVRELVTIAARRPSTGRWRIVVIEDADRLTE----RAANALLKAVEE-------------- 143 (394)
T ss_pred CCCEEEeccccccCC--HHHHHHHHHHHHhCcccCCcEEEEEechhhcCH----HHHHHHHHHhhc--------------
Confidence 00 01111 111222222221 1223999999999964 346778877764
Q ss_pred ccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHH
Q 005548 616 IDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIAR 659 (691)
Q Consensus 616 ~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~ 659 (691)
...+++||++|+.++.+.+++++||..+.|..++.++....+.
T Consensus 144 -p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 144 -PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLV 186 (394)
T ss_pred -CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHH
Confidence 2356778888888889989999999999999999988776665
No 117
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=5.7e-11 Score=136.42 Aligned_cols=187 Identities=19% Similarity=0.192 Sum_probs=118.6
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE----------EEeC
Q 005548 469 IRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR----------FSVG 538 (691)
Q Consensus 469 ~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~----------i~~~ 538 (691)
.+.++..+++++|++++++.+...+...++ ++.++|+||+|+||||+|+++|+.+...... -.|+
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~ri-----~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMDRV-----GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCC-----CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 346677778999999999999888764332 3569999999999999999999999753210 0111
Q ss_pred ccchhhhh-hcccCccc---ccc---cchHHHHHHHh-----cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHH
Q 005548 539 GLADVAEI-KGHRRTYI---GAM---PGKMVQCLKNV-----GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNAN 606 (691)
Q Consensus 539 ~~~~~~~l-~g~~~~~v---G~~---~~~i~~~l~~~-----~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~ 606 (691)
....-..+ .|....++ |.. ...+....... .....|++|||++.+.. ..+++|+..|+.
T Consensus 83 ~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~----~a~naLLK~LEe----- 153 (620)
T PRK14954 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST----AAFNAFLKTLEE----- 153 (620)
T ss_pred cCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----HHHHHHHHHHhC-----
Confidence 10000000 00000000 000 11222221111 12234999999998853 345667766653
Q ss_pred HHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHH
Q 005548 607 FLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFG 686 (691)
Q Consensus 607 ~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ 686 (691)
....++||++++....+.+++.+|+.++.|..++.++....+...+.+. .+.+++++++.
T Consensus 154 ----------Pp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~e----------gi~I~~eal~~ 213 (620)
T PRK14954 154 ----------PPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAE----------GIQIDADALQL 213 (620)
T ss_pred ----------CCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHH
Confidence 2356788887777788878999999999999999998887777766642 24466777766
Q ss_pred hhh
Q 005548 687 IFR 689 (691)
Q Consensus 687 ii~ 689 (691)
|+.
T Consensus 214 La~ 216 (620)
T PRK14954 214 IAR 216 (620)
T ss_pred HHH
Confidence 553
No 118
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.23 E-value=1.3e-10 Score=125.35 Aligned_cols=185 Identities=22% Similarity=0.304 Sum_probs=112.8
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC-----eEEEEeCccchh-
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRK-----FFRFSVGGLADV- 543 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~-----~~~i~~~~~~~~- 543 (691)
+.++...++++|.+++++.+..++... ..++++|+|||||||||+++++++.+... +..+++.+....
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 345555567889999999988877532 22479999999999999999999988533 334444332110
Q ss_pred -hhhhcccC--ccccc-------ccchHHHHHHHh------cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHH
Q 005548 544 -AEIKGHRR--TYIGA-------MPGKMVQCLKNV------GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANF 607 (691)
Q Consensus 544 -~~l~g~~~--~~vG~-------~~~~i~~~l~~~------~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~ 607 (691)
..+..+.. .+.+. ....+....... .....++++||++.+.. +..+.|+..++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~----~~~~~L~~~le~------ 151 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE----DAQQALRRIMEQ------ 151 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH----HHHHHHHHHHHh------
Confidence 00000000 00000 001111111111 12235999999988743 223344443332
Q ss_pred HHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHh
Q 005548 608 LDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGI 687 (691)
Q Consensus 608 ~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~i 687 (691)
. ...+.||++++....+.+++.+|+..+.|.+++.++...+++..+.+. | +.++++++..+
T Consensus 152 ---~------~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~-----~-----~~~~~~al~~l 212 (337)
T PRK12402 152 ---Y------SRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAE-----G-----VDYDDDGLELI 212 (337)
T ss_pred ---c------cCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHc-----C-----CCCCHHHHHHH
Confidence 1 134567777776667778899999999999999999988888877642 2 44778888777
Q ss_pred hh
Q 005548 688 FR 689 (691)
Q Consensus 688 i~ 689 (691)
++
T Consensus 213 ~~ 214 (337)
T PRK12402 213 AY 214 (337)
T ss_pred HH
Confidence 65
No 119
>PRK08181 transposase; Validated
Probab=99.22 E-value=9.2e-11 Score=121.99 Aligned_cols=187 Identities=18% Similarity=0.253 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHHhhcccCCccchhhHhHHhhhcCCCCCCCCchhhhHHHHhhhhhccccchHHHHHHHHHHHHhcccc
Q 005548 420 RHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTALPWGNYSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR 499 (691)
Q Consensus 420 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~ 499 (691)
+.....++.|+. .++.+.+...+. .+++|+. .+.+.||+... +.++... ........++
T Consensus 44 e~L~~ll~~E~~--------~R~~~~~~r~lk-~A~~p~~-~tle~fd~~~~-~~~~~~~---~~~L~~~~~~------- 102 (269)
T PRK08181 44 RFLAAIAEHELA--------ERARRRIERHLA-EAHLPPG-KTLDSFDFEAV-PMVSKAQ---VMAIAAGDSW------- 102 (269)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHH-HCCCCCC-CCHhhCCccCC-CCCCHHH---HHHHHHHHHH-------
Confidence 344444555554 233333444444 7889986 47888887522 1122100 0001111122
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchh-hhhhcccCcccccccchHHHHHHHhcccCCEEEeh
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADV-AEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLID 578 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~-~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllD 578 (691)
+..+.+++|+||||||||+|+.+|+..+......+.+....+. ..+... ...+.....+.... ..++++||
T Consensus 103 -~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a------~~~~~~~~~l~~l~-~~dLLIID 174 (269)
T PRK08181 103 -LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA------RRELQLESAIAKLD-KFDLLILD 174 (269)
T ss_pred -HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHH------HhCCcHHHHHHHHh-cCCEEEEe
Confidence 2467889999999999999999999877544444443332221 122111 11122222333322 34599999
Q ss_pred hhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC----------CCChhhcCeE----EEE
Q 005548 579 EIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE----------NIPNPLLDRM----EVI 644 (691)
Q Consensus 579 Eidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~----------~l~~aLldR~----~iI 644 (691)
|++....+ ......|+++++.. +.+..+|+|||... .+..+++||+ .+|
T Consensus 175 Dlg~~~~~--~~~~~~Lf~lin~R---------------~~~~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i 237 (269)
T PRK08181 175 DLAYVTKD--QAETSVLFELISAR---------------YERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIF 237 (269)
T ss_pred ccccccCC--HHHHHHHHHHHHHH---------------HhCCCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEE
Confidence 99876532 23456677777631 12235788999752 2445677887 457
Q ss_pred EEcCCCHH
Q 005548 645 AIAGYITD 652 (691)
Q Consensus 645 ~~~~~~~~ 652 (691)
.|.+.+..
T Consensus 238 ~~~g~s~R 245 (269)
T PRK08181 238 EMNVESYR 245 (269)
T ss_pred ecCCccch
Confidence 77775543
No 120
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.22 E-value=3e-12 Score=120.14 Aligned_cols=127 Identities=23% Similarity=0.393 Sum_probs=80.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCc---ccccccchHHHHHHHhcccCCEEEehhhhh
Q 005548 506 IICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRT---YIGAMPGKMVQCLKNVGTANPLVLIDEIDK 582 (691)
Q Consensus 506 ~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~---~vG~~~~~i~~~l~~~~~~~~VlllDEidk 582 (691)
+++|+||||||||++++.+|..++.+...+.+....+..++.|.... .....++.+...+ ..+.+++|||+++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~----~~~~il~lDEin~ 76 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM----RKGGILVLDEINR 76 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH----HEEEEEEESSCGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc----cceeEEEECCccc
Confidence 58999999999999999999999999999999887777777664321 1122222222222 2445999999998
Q ss_pred hcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccC-----CceEEEEEeCCCC----CCChhhcCeE
Q 005548 583 LGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDL-----SKVLFVCTANVVE----NIPNPLLDRM 641 (691)
Q Consensus 583 l~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~-----~~vi~I~TsN~~~----~l~~aLldR~ 641 (691)
+.. ++...|+..++..... +.........+. .+..+|+|+|... .++++|+|||
T Consensus 77 a~~----~v~~~L~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 77 APP----EVLESLLSLLEERRIQ-LPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp --H----HHHHTTHHHHSSSEEE-E-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred CCH----HHHHHHHHHHhhCccc-ccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 853 4566666666642111 001111111111 1489999999988 7999999997
No 121
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.22 E-value=5.3e-11 Score=131.10 Aligned_cols=175 Identities=19% Similarity=0.227 Sum_probs=104.4
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcC--CeEEEEeCccchhhh
Q 005548 468 VIRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNR--KFFRFSVGGLADVAE 545 (691)
Q Consensus 468 ~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~--~~~~i~~~~~~~~~~ 545 (691)
+......+.+.++|.+++++.+...+. .+.+++|.||||||||++|++|+...+. ++..+.+.- ....+
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aal--------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~f-ttp~D 81 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAAL--------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEE 81 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHc--------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeee-cCcHH
Confidence 455677888999999999888776664 5688999999999999999999998764 233222210 11234
Q ss_pred hhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEE
Q 005548 546 IKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVC 625 (691)
Q Consensus 546 l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~ 625 (691)
+.|...-+.....+.+............++|+|||.++++ ...+.|++.|...+ |... +...+....++++
T Consensus 82 LfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp----~~QsaLLeam~Er~---~t~g--~~~~~lp~rfiv~ 152 (498)
T PRK13531 82 VFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP----AILNTLLTAINERR---FRNG--AHEEKIPMRLLVT 152 (498)
T ss_pred hcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCH----HHHHHHHHHHHhCe---EecC--CeEEeCCCcEEEE
Confidence 4442100000001111100000111223999999998754 56788898886532 2111 1122333456666
Q ss_pred EeCCCCC---CChhhcCeEEE-EEEcCCCH-HHHHHHHHH
Q 005548 626 TANVVEN---IPNPLLDRMEV-IAIAGYIT-DEKMHIARD 660 (691)
Q Consensus 626 TsN~~~~---l~~aLldR~~i-I~~~~~~~-~e~~~I~~~ 660 (691)
+||.... ..+++.|||.+ +.++++.. ++-.+++..
T Consensus 153 ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 153 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred ECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 7775432 23589999965 67777763 444667665
No 122
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=6.7e-11 Score=130.54 Aligned_cols=182 Identities=19% Similarity=0.206 Sum_probs=114.9
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE----------EEeCc
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR----------FSVGG 539 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~----------i~~~~ 539 (691)
+.++..+++++|++.+++.+...+.-.+ -++.++|+||+|+||||+|+++|+.+...... -.|+.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 4566677799999999999888876432 23559999999999999999999998653100 01111
Q ss_pred cc-----------hhhhhhcccCcccccccchHHHHHHHh-----cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHH
Q 005548 540 LA-----------DVAEIKGHRRTYIGAMPGKMVQCLKNV-----GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQ 603 (691)
Q Consensus 540 ~~-----------~~~~l~g~~~~~vG~~~~~i~~~l~~~-----~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~ 603 (691)
.. +...+.+. ...| ...+....... .....|+++||++++.. ..++.|+..++.
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~--~~~~--id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----~~~~~LLk~LEe-- 153 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAA--SNNS--VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----AAFNAFLKTLEE-- 153 (397)
T ss_pred CHHHHHHhcCCCCCeEeeccc--ccCC--HHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----HHHHHHHHHHhc--
Confidence 00 00001000 0000 11222221111 11234999999998853 234555555542
Q ss_pred HHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHH
Q 005548 604 NANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQ 683 (691)
Q Consensus 604 ~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~ 683 (691)
....++||++++....+.+++.+|+.+++|.+++.++....+...+... .+.+++++
T Consensus 154 -------------p~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~----------g~~i~~~a 210 (397)
T PRK14955 154 -------------PPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE----------GISVDADA 210 (397)
T ss_pred -------------CCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc----------CCCCCHHH
Confidence 2346777777777778878899999999999999998888887776542 24466777
Q ss_pred HHHhhh
Q 005548 684 GFGIFR 689 (691)
Q Consensus 684 i~~ii~ 689 (691)
++.|+.
T Consensus 211 l~~l~~ 216 (397)
T PRK14955 211 LQLIGR 216 (397)
T ss_pred HHHHHH
Confidence 666553
No 123
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.21 E-value=6.2e-11 Score=114.59 Aligned_cols=165 Identities=22% Similarity=0.286 Sum_probs=103.4
Q ss_pred HHHHHHHHHH-Hhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchH
Q 005548 484 DVKERILEFI-AVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKM 561 (691)
Q Consensus 484 ~vk~~i~~~l-~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i 561 (691)
++.+++.... ++.+++ ....|++++|.||||+||||++|.||..+.++.|.+.+.|++...+-.+. +..+|..++..
T Consensus 6 ~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~v-rr~IGVl~~e~ 84 (245)
T COG4555 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFV-RRKIGVLFGER 84 (245)
T ss_pred ehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHH-hhhcceecCCc
Confidence 3344444433 444555 67899999999999999999999999999999999998887543221111 22333333221
Q ss_pred HHH--------------------------------------------------------HHHhcccCC-EEEehhhhhhc
Q 005548 562 VQC--------------------------------------------------------LKNVGTANP-LVLIDEIDKLG 584 (691)
Q Consensus 562 ~~~--------------------------------------------------------l~~~~~~~~-VlllDEidkl~ 584 (691)
... +..+...+| ++++||.-
T Consensus 85 glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~--- 161 (245)
T COG4555 85 GLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT--- 161 (245)
T ss_pred ChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC---
Confidence 100 011111122 45555531
Q ss_pred ccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEE-----EcCCCHHHHHHHHH
Q 005548 585 RGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIA-----IAGYITDEKMHIAR 659 (691)
Q Consensus 585 ~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~-----~~~~~~~e~~~I~~ 659 (691)
++||-.....|.|.+.... .++..+|++||..+.+ +++|||+.+++ +.+-..........
T Consensus 162 ------------sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~Ev-ealCDrvivlh~Gevv~~gs~~~l~~r~~~ 226 (245)
T COG4555 162 ------------SGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEV-EALCDRVIVLHKGEVVLEGSIEALDARTVL 226 (245)
T ss_pred ------------CCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHH-HHhhheEEEEecCcEEEcCCHHHHHHHHhh
Confidence 3577777777777776654 3578889999999998 89999998763 33333344455555
Q ss_pred HHHhHHhH
Q 005548 660 DYLEKTTR 667 (691)
Q Consensus 660 ~~l~~~~~ 667 (691)
+.+.+.+.
T Consensus 227 ~~le~~f~ 234 (245)
T COG4555 227 RNLEEIFA 234 (245)
T ss_pred cCHHHHHH
Confidence 55555443
No 124
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.21 E-value=1.1e-10 Score=124.97 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=111.9
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeE---EEEeCccchhhhhh
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF---RFSVGGLADVAEIK 547 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~---~i~~~~~~~~~~l~ 547 (691)
.++...++++|.+++++.+..++.-. ..++++|+||||+|||++++++++.+..... .+.+.....
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~----- 79 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE----- 79 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc-----
Confidence 34444457889999999988887532 2346899999999999999999998754322 112111000
Q ss_pred cccCcccccccchHHHHHHHh-c--ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEE
Q 005548 548 GHRRTYIGAMPGKMVQCLKNV-G--TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFV 624 (691)
Q Consensus 548 g~~~~~vG~~~~~i~~~l~~~-~--~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I 624 (691)
.........+....... . ....++++||++.+.. +....|+..++. ...++.+|
T Consensus 80 ----~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~----~~~~~L~~~le~---------------~~~~~~lI 136 (319)
T PRK00440 80 ----RGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS----DAQQALRRTMEM---------------YSQNTRFI 136 (319)
T ss_pred ----cchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----HHHHHHHHHHhc---------------CCCCCeEE
Confidence 00000011111111111 0 1234999999988743 223344444431 12456788
Q ss_pred EEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 625 CTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 625 ~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
+++|....+.+++.+|+.+++|.+++.++...++..++.+. .+.++++++..+++
T Consensus 137 l~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~----------~~~i~~~al~~l~~ 191 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENE----------GIEITDDALEAIYY 191 (319)
T ss_pred EEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 88888887778899999999999999999999988887743 24577888887765
No 125
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.21 E-value=7.8e-11 Score=141.17 Aligned_cols=181 Identities=19% Similarity=0.281 Sum_probs=122.5
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc----------CCeEEEEeCcc
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN----------RKFFRFSVGGL 540 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~----------~~~~~i~~~~~ 540 (691)
+++.--+.++|.++...++.+.+.. ....+++|+||||||||++++.||..+. ..++.++++.+
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l 245 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 245 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhc------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh
Confidence 4444446899999988888777653 2456799999999999999999999873 34444444332
Q ss_pred chhhhhhcccCcccccccchHHHHHHHhcc--cCCEEEehhhhhhcccCCC----CHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 541 ADVAEIKGHRRTYIGAMPGKMVQCLKNVGT--ANPLVLIDEIDKLGRGHAG----DPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 541 ~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~--~~~VlllDEidkl~~~~~~----~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
. .| .+|.|....++...+..... .+.|+||||++.+...... +..+.|...+
T Consensus 246 ~-----ag--~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--------------- 303 (857)
T PRK10865 246 V-----AG--AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--------------- 303 (857)
T ss_pred h-----hc--cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh---------------
Confidence 1 11 34667767777766665432 3459999999998743211 1233322222
Q ss_pred cccCCceEEEEEeCCCC-----CCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHh
Q 005548 615 PIDLSKVLFVCTANVVE-----NIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGI 687 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~-----~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~i 687 (691)
..+.+.+|++|+..+ .+++++.+||..|.+..|+.++...|++....+. ...+ .+.++++++...
T Consensus 304 --~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~-e~~~-----~v~~~d~a~~~a 373 (857)
T PRK10865 304 --ARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERY-ELHH-----HVQITDPAIVAA 373 (857)
T ss_pred --hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhh-ccCC-----CCCcCHHHHHHH
Confidence 125788999888765 4789999999888999999999999987654432 1122 366778777664
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.9e-10 Score=132.80 Aligned_cols=187 Identities=20% Similarity=0.209 Sum_probs=117.6
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeE--E-EEeCccchhhh
Q 005548 469 IRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF--R-FSVGGLADVAE 545 (691)
Q Consensus 469 ~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~--~-i~~~~~~~~~~ 545 (691)
.+.++..+++++|++++++.+...+.-.. -++.++|+||+|+||||+++++|+.+..... . ..|+....-..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 44667777899999999999988876432 3466899999999999999999999864221 0 01111100000
Q ss_pred hh-cccCccc--c----cccchHHHH---HHHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhcc
Q 005548 546 IK-GHRRTYI--G----AMPGKMVQC---LKNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLD 613 (691)
Q Consensus 546 l~-g~~~~~v--G----~~~~~i~~~---l~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~ 613 (691)
+. +....++ . .....+... +... .....|+||||++.+.. +..+.|+..|+.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~----~a~naLLk~LEe------------ 146 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST----AAFNALLKTLEE------------ 146 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH----HHHHHHHHHHhc------------
Confidence 00 0000000 0 000111111 1111 12334999999998853 335566665543
Q ss_pred ccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 614 VPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 614 ~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
...+++||++++..+.+.+.+.+|+..+.|..++..+...++...+.+. .+.++++++..|++
T Consensus 147 ---pp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~e----------gl~i~~eal~~La~ 209 (585)
T PRK14950 147 ---PPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAE----------GINLEPGALEAIAR 209 (585)
T ss_pred ---CCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 1257888888888888878899999999999999998888888776642 24466666666553
No 127
>PRK09183 transposase/IS protein; Provisional
Probab=99.20 E-value=8.7e-11 Score=122.06 Aligned_cols=186 Identities=22% Similarity=0.278 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHHhhcccCCccchhhHhHHhhhcCCCCCCCCchhhhHHHHhhhhhccccchHHHHHHHHHHHHhcccc
Q 005548 420 RHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTALPWGNYSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR 499 (691)
Q Consensus 420 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~ 499 (691)
+.....++.|+. .++...+...+. .+++|+. .+.+.||+.. .+.+++ .. ... +..+.
T Consensus 41 e~l~~ll~~E~~--------~R~~~~~~~~~k-~a~~p~~-~~l~~fd~~~-~~~~~~------~~----i~~--L~~~~ 97 (259)
T PRK09183 41 DFLEHLLHEEKL--------ARHQRKQAMYTR-MAAFPAV-KTFEEYDFTF-ATGAPQ------KQ----LQS--LRSLS 97 (259)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHH-hCCCCCC-CcHhhccccc-CCCCCH------HH----HHH--HhcCC
Confidence 344444555554 333444444444 7899997 4778888752 222221 11 111 22333
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhh-hhhcccCcccccccchHHHHHHHhcccCCEEEeh
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVA-EIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLID 578 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~-~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllD 578 (691)
.+..+.+++|+||||||||+|+.+|+..+....+.+.+....+.. .+... ...+.+...+.......++++||
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a------~~~~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTA------QRQGRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHH------HHCCcHHHHHHHHhcCCCEEEEc
Confidence 567899999999999999999999988765444444432222211 11110 01112223333323344599999
Q ss_pred hhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCC-----C------ChhhcCeE----EE
Q 005548 579 EIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVEN-----I------PNPLLDRM----EV 643 (691)
Q Consensus 579 Eidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~-----l------~~aLldR~----~i 643 (691)
|++.... .......|+++++.. +.+..+|+|||.... + ..+++||+ .+
T Consensus 172 dlg~~~~--~~~~~~~lf~li~~r---------------~~~~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~ 234 (259)
T PRK09183 172 EIGYLPF--SQEEANLFFQVIAKR---------------YEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHV 234 (259)
T ss_pred ccccCCC--ChHHHHHHHHHHHHH---------------HhcCcEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEE
Confidence 9987542 223455677766541 112246789997521 2 23677776 35
Q ss_pred EEEcCCCH
Q 005548 644 IAIAGYIT 651 (691)
Q Consensus 644 I~~~~~~~ 651 (691)
|.|.+.+.
T Consensus 235 i~~~g~s~ 242 (259)
T PRK09183 235 VQIKGESY 242 (259)
T ss_pred EeecCCCC
Confidence 77777553
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=2.3e-10 Score=132.06 Aligned_cols=170 Identities=17% Similarity=0.224 Sum_probs=110.5
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEE----EEeCccchh-h
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFR----FSVGGLADV-A 544 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~----i~~~~~~~~-~ 544 (691)
+.++..+.+++|++++++.+...+...+ -.+.++|+||+|+||||+|+++|+.+...... -.|+ ..+. .
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg-~C~~C~ 82 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG-KCELCR 82 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc-ccHHHH
Confidence 3556666789999999999988887432 24679999999999999999999998753211 0111 1110 0
Q ss_pred hh-hcccCcc------cccccchHHHHHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhc
Q 005548 545 EI-KGHRRTY------IGAMPGKMVQCLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYL 612 (691)
Q Consensus 545 ~l-~g~~~~~------vG~~~~~i~~~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~ 612 (691)
.+ .|....+ .+.....+......+. ....|++|||++++.. +.+++|+..|+.
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~----~a~naLLK~LEe----------- 147 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST----AAFNALLKTLEE----------- 147 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH----HHHHHHHHHHhc-----------
Confidence 00 0000000 0011112223222221 1234999999999853 356677776653
Q ss_pred cccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhH
Q 005548 613 DVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEK 664 (691)
Q Consensus 613 ~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~ 664 (691)
....++||++++....+.+.+.+||..+.|..++.++....+...+.+
T Consensus 148 ----Pp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 148 ----PPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred ----CCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH
Confidence 235788888888888887899999999999999998877777666554
No 129
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=1.3e-10 Score=127.07 Aligned_cols=183 Identities=16% Similarity=0.223 Sum_probs=116.5
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccc-hhhhhh
Q 005548 469 IRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA-DVAEIK 547 (691)
Q Consensus 469 ~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~-~~~~l~ 547 (691)
.+.++...++++|++.+++.+...+.-. ...++++|+||||+|||++++++++.+..........+.. +..++.
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~ 83 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD 83 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec
Confidence 3456666778999999999998888643 2346899999999999999999999986532110000000 000000
Q ss_pred cccCcccccccchHHHHHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceE
Q 005548 548 GHRRTYIGAMPGKMVQCLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVL 622 (691)
Q Consensus 548 g~~~~~vG~~~~~i~~~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi 622 (691)
+ ... .....+...+..+. ....++++||++.+.. ...+.|+..++. ....++
T Consensus 84 ~--~~~--~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~----~~~~~ll~~le~---------------~~~~~~ 140 (367)
T PRK14970 84 A--ASN--NSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS----AAFNAFLKTLEE---------------PPAHAI 140 (367)
T ss_pred c--ccC--CCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----HHHHHHHHHHhC---------------CCCceE
Confidence 0 000 00112222222111 1234999999998753 224445444431 124677
Q ss_pred EEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 623 FVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 623 ~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
||++++....+.+++.+|+.++.|.+++.++...++...+.+. .+.+++++++.++.
T Consensus 141 ~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~----------g~~i~~~al~~l~~ 197 (367)
T PRK14970 141 FILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKE----------GIKFEDDALHIIAQ 197 (367)
T ss_pred EEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 8888887788888999999999999999999888888877642 24577777777654
No 130
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.5e-10 Score=122.81 Aligned_cols=178 Identities=23% Similarity=0.324 Sum_probs=125.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHH-Hh-----cccCCEEEe
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLK-NV-----GTANPLVLI 577 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~-~~-----~~~~~Vlll 577 (691)
..+++|+||+|+|||.|++.||+.++.++...+|..+.. .+|||..-..+.+.+. .+ ..+.+|+||
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQ--------AGYVGeDVEsvi~KLl~~A~~nVekAQqGIVfl 297 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQ--------AGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFL 297 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhh--------cccccccHHHHHHHHHHHccCCHHHHhcCeEEE
Confidence 468999999999999999999999999999888876542 5788887665544332 22 224569999
Q ss_pred hhhhhhcc---------cCCC-CHHHHHHhhcCHHHHHH----H--HHhhccccccCCceEEEEEeCCC-----------
Q 005548 578 DEIDKLGR---------GHAG-DPASALLELLDPEQNAN----F--LDHYLDVPIDLSKVLFVCTANVV----------- 630 (691)
Q Consensus 578 DEidkl~~---------~~~~-~~~~~LL~~LD~~~~~~----~--~d~~~~~~~~~~~vi~I~TsN~~----------- 630 (691)
||+||+.. +.++ ++..+||.+++...... . ...-..+.+|..+++||+.--..
T Consensus 298 DEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~ 377 (564)
T KOG0745|consen 298 DEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLD 377 (564)
T ss_pred ehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhc
Confidence 99999872 2222 37888887776432111 0 00111234455667776532210
Q ss_pred ---------------------------------------------CCCChhhcCeEEE-EEEcCCCHHHHHHHHH---HH
Q 005548 631 ---------------------------------------------ENIPNPLLDRMEV-IAIAGYITDEKMHIAR---DY 661 (691)
Q Consensus 631 ---------------------------------------------~~l~~aLldR~~i-I~~~~~~~~e~~~I~~---~~ 661 (691)
..+-|+|..||.+ +.|..++.++++.|+. +.
T Consensus 378 d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPkna 457 (564)
T KOG0745|consen 378 DKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNA 457 (564)
T ss_pred chhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhh
Confidence 0133778999986 6899999999998884 46
Q ss_pred HhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 662 LEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 662 l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
|.+..++..+.+..++.+|+++++.|.+
T Consensus 458 L~~Qyk~lf~~~nV~L~fTe~Al~~IAq 485 (564)
T KOG0745|consen 458 LGKQYKKLFGMDNVELHFTEKALEAIAQ 485 (564)
T ss_pred HHHHHHHHhccCCeeEEecHHHHHHHHH
Confidence 6666777888888999999999998875
No 131
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.18 E-value=1.1e-10 Score=137.15 Aligned_cols=186 Identities=20% Similarity=0.257 Sum_probs=121.2
Q ss_pred hhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc----------CCeEEEEeCccc
Q 005548 472 QKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN----------RKFFRFSVGGLA 541 (691)
Q Consensus 472 ~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~----------~~~~~i~~~~~~ 541 (691)
+..-.+.++|-+....++.+.+.. ....+++|+||||||||++++.+|..+- ..++.++.+
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~--- 251 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCR------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG--- 251 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhc------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH---
Confidence 333345788988888888776653 2456789999999999999999997652 112211111
Q ss_pred hhhhhhcccCcccccccchHHHHHHHhcc-cCCEEEehhhhhhcccCC-CCHHHHHHhhcCHHHHHHHHHhhccccccCC
Q 005548 542 DVAEIKGHRRTYIGAMPGKMVQCLKNVGT-ANPLVLIDEIDKLGRGHA-GDPASALLELLDPEQNANFLDHYLDVPIDLS 619 (691)
Q Consensus 542 ~~~~l~g~~~~~vG~~~~~i~~~l~~~~~-~~~VlllDEidkl~~~~~-~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~ 619 (691)
..+.| ..|.|....++...+..... .+.|+||||++.+..... .+....+.+.|.+ +. ..+
T Consensus 252 --~llaG--~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp---------~L----~~g 314 (758)
T PRK11034 252 --SLLAG--TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP---------LL----SSG 314 (758)
T ss_pred --HHhcc--cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHH---------HH----hCC
Confidence 11112 24666666666665554432 345999999998863321 1111122222222 11 125
Q ss_pred ceEEEEEeCCCC-----CCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 620 KVLFVCTANVVE-----NIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 620 ~vi~I~TsN~~~-----~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
.+.+|++||..+ ..+++|.+||..|.+..|+.++...|++.+..+... .+ .+.++++++..++.
T Consensus 315 ~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~-~h-----~v~i~~~al~~a~~ 383 (758)
T PRK11034 315 KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEA-HH-----DVRYTAKAVRAAVE 383 (758)
T ss_pred CeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhh-cc-----CCCcCHHHHHHHHH
Confidence 788999998754 478999999999999999999999999987655432 23 36688888876553
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=3.5e-10 Score=130.61 Aligned_cols=183 Identities=17% Similarity=0.212 Sum_probs=119.6
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE---EeCccc----
Q 005548 469 IRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF---SVGGLA---- 541 (691)
Q Consensus 469 ~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i---~~~~~~---- 541 (691)
.+.++..+++++|++++++.+...+.-.. -.+.++|+||+|+||||+++++|+.+....... .|+...
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~ 83 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA 83 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence 45667777899999999999998887432 235699999999999999999999986321100 011000
Q ss_pred -------hhhhhhcccCcccccccchHHHHHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHH
Q 005548 542 -------DVAEIKGHRRTYIGAMPGKMVQCLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLD 609 (691)
Q Consensus 542 -------~~~~l~g~~~~~vG~~~~~i~~~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d 609 (691)
+...+.+..... ...+......+. ....|++|||++.+.. +.+++|+..|+.
T Consensus 84 ~~~~~~~n~~~ld~~~~~~----vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~----~a~naLLK~LEe-------- 147 (614)
T PRK14971 84 FNEQRSYNIHELDAASNNS----VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ----AAFNAFLKTLEE-------- 147 (614)
T ss_pred HhcCCCCceEEecccccCC----HHHHHHHHHHHhhCcccCCcEEEEEECcccCCH----HHHHHHHHHHhC--------
Confidence 000111100000 011222222211 1234999999998853 346677766653
Q ss_pred hhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 610 HYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 610 ~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
...+++||++++....+.+++.+|+.++.|..++.++....+...+.+. .+.++++++..|+.
T Consensus 148 -------pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~e----------gi~i~~~al~~La~ 210 (614)
T PRK14971 148 -------PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKE----------GITAEPEALNVIAQ 210 (614)
T ss_pred -------CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 2357888888887788888999999999999999999988888777653 24466666666543
No 133
>PRK06526 transposase; Provisional
Probab=99.17 E-value=7.3e-11 Score=122.06 Aligned_cols=188 Identities=21% Similarity=0.325 Sum_probs=104.1
Q ss_pred hhhHHHHHHHHHHHhhcccCCccchhhHhHHhhhcCCCCCCCCchhhhHHHHhhhhhccccchHHHHHHHHHHHHhcccc
Q 005548 420 RHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTALPWGNYSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR 499 (691)
Q Consensus 420 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~ 499 (691)
+.....++.|+. .++.+.+...+. .+++|+. .+.+.||+...+ ++... .+. .+....
T Consensus 37 e~l~~ll~~E~~--------~R~~~~~~~~lk-~a~~p~~-~~le~fd~~~~~--------~~~~~--~~~---~l~~~~ 93 (254)
T PRK06526 37 EFLAACLQREVA--------ARESHGGEGRIR-AARFPAR-KSLEEFDFDHQR--------SLKRD--TIA---HLGTLD 93 (254)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHH-hCCCCCC-CChhhccCccCC--------CcchH--HHH---HHhcCc
Confidence 344444555554 333444555555 7889997 478888875221 22211 111 122333
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchh-hhhhcccCcccccccchHHHHHHHhcccCCEEEeh
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADV-AEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLID 578 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~-~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllD 578 (691)
.+..+.+++|+||||||||+|+.+|+..+......+.+....+. ..+... ...+.....+.... ...+++||
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~------~~~~~~~~~l~~l~-~~dlLIID 166 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAA------HHAGRLQAELVKLG-RYPLLIVD 166 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHH------HhcCcHHHHHHHhc-cCCEEEEc
Confidence 55678899999999999999999999887544444443322221 111110 11122222233322 34599999
Q ss_pred hhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCC----------CChhhcCeE----EEE
Q 005548 579 EIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVEN----------IPNPLLDRM----EVI 644 (691)
Q Consensus 579 Eidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~----------l~~aLldR~----~iI 644 (691)
|++.... .......|+++++.. +.+..+|+|||.+.. +..+++||+ .++
T Consensus 167 D~g~~~~--~~~~~~~L~~li~~r---------------~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i 229 (254)
T PRK06526 167 EVGYIPF--EPEAANLFFQLVSSR---------------YERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVI 229 (254)
T ss_pred ccccCCC--CHHHHHHHHHHHHHH---------------HhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEE
Confidence 9987642 123345666666531 122347889997522 223566776 467
Q ss_pred EEcCCCHHHH
Q 005548 645 AIAGYITDEK 654 (691)
Q Consensus 645 ~~~~~~~~e~ 654 (691)
.|.+.+...+
T Consensus 230 ~~~g~s~R~~ 239 (254)
T PRK06526 230 SLKGDSYRLK 239 (254)
T ss_pred eecCCCcchh
Confidence 8887665433
No 134
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.16 E-value=2.4e-11 Score=121.40 Aligned_cols=165 Identities=24% Similarity=0.335 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc-ccCcccccccch
Q 005548 483 NDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG-HRRTYIGAMPGK 560 (691)
Q Consensus 483 ~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g-~~~~~vG~~~~~ 560 (691)
+++.+.+....++.+++ .++.|+.++|+||+||||||++|+|-+.+.++.|+|.+.|.. ..+... .-+..+||.-|.
T Consensus 5 ~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~-i~~~d~~~LRr~IGYviQq 83 (309)
T COG1125 5 ENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED-ISDLDPVELRRKIGYVIQQ 83 (309)
T ss_pred eeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCee-cccCCHHHHHHhhhhhhhh
Confidence 45566666666677777 789999999999999999999999999999999999998853 222211 113456777666
Q ss_pred HHHHHHHhcccCCEEE------------------------ehh---hhhhcccCCCC------HHHHHH-----------
Q 005548 561 MVQCLKNVGTANPLVL------------------------IDE---IDKLGRGHAGD------PASALL----------- 596 (691)
Q Consensus 561 i~~~l~~~~~~~~Vll------------------------lDE---idkl~~~~~~~------~~~~LL----------- 596 (691)
+..+...+...| |.+ +|. .++.+...+++ ++.+|.
T Consensus 84 igLFPh~Tv~eN-Ia~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEP 162 (309)
T COG1125 84 IGLFPHLTVAEN-IATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162 (309)
T ss_pred cccCCCccHHHH-HHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCC
Confidence 444333333333 111 111 11111222222 233333
Q ss_pred -hhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE---EEcCCCH
Q 005548 597 -ELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI---AIAGYIT 651 (691)
Q Consensus 597 -~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI---~~~~~~~ 651 (691)
..||+.....+.+.+..+...++.++++.| |+.+.. -.|.||+.++ ++..+..
T Consensus 163 FgALDpI~R~~lQ~e~~~lq~~l~kTivfVT-HDidEA-~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 163 FGALDPITRKQLQEEIKELQKELGKTIVFVT-HDIDEA-LKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred ccccChhhHHHHHHHHHHHHHHhCCEEEEEe-cCHHHH-HhhhceEEEecCCeEEEeCC
Confidence 468888888888888877766666655555 554332 2367999776 3444444
No 135
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.16 E-value=1.9e-11 Score=121.37 Aligned_cols=141 Identities=24% Similarity=0.340 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccch
Q 005548 482 LNDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGK 560 (691)
Q Consensus 482 l~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~ 560 (691)
++++.+.+.+..++.+++ .+++|++++|+||||+||||+.|+|.+++.++.|+|.+.|-...... +..+||.|..
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~----~~rIGyLPEE 80 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI----KNRIGYLPEE 80 (300)
T ss_pred EecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhh----hhhcccChhh
Confidence 457788888888888888 78999999999999999999999999999999999999874322221 2334554433
Q ss_pred H---------------------------------------------------------HHHHHHhcccCCEEEehhhhhh
Q 005548 561 M---------------------------------------------------------VQCLKNVGTANPLVLIDEIDKL 583 (691)
Q Consensus 561 i---------------------------------------------------------~~~l~~~~~~~~VlllDEidkl 583 (691)
- .+.+....-.+.++++||-
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP--- 157 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP--- 157 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC---
Confidence 0 0111111112226666664
Q ss_pred cccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 584 GRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 584 ~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
+++|||.....+.+.+.+.. .++..||+++|..+.+ +.||||+.++
T Consensus 158 ------------FSGLDPVN~elLk~~I~~lk--~~GatIifSsH~Me~v-EeLCD~llmL 203 (300)
T COG4152 158 ------------FSGLDPVNVELLKDAIFELK--EEGATIIFSSHRMEHV-EELCDRLLML 203 (300)
T ss_pred ------------ccCCChhhHHHHHHHHHHHH--hcCCEEEEecchHHHH-HHHhhhhhee
Confidence 24688876666666666654 3688999999999998 8999999776
No 136
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.3e-10 Score=116.12 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=73.4
Q ss_pred cCCEEEehhhhhhcccC-CC-------CHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeC----CCCCCChhhc
Q 005548 571 ANPLVLIDEIDKLGRGH-AG-------DPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTAN----VVENIPNPLL 638 (691)
Q Consensus 571 ~~~VlllDEidkl~~~~-~~-------~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN----~~~~l~~aLl 638 (691)
+++|+||||||++.... ++ +++..||-.++..+. ...|.-+ ...+++||++.- .++++-|.|.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV---~TKyG~V--kTdHILFIasGAFh~sKPSDLiPELQ 324 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTV---STKYGPV--KTDHILFIASGAFHVAKPSDLIPELQ 324 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCcee---ecccccc--ccceEEEEecCceecCChhhcChhhc
Confidence 45799999999988321 11 356677766664222 2223222 345788886532 2445558899
Q ss_pred CeEEE-EEEcCCCHHHHHHHHHH---HHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 639 DRMEV-IAIAGYITDEKMHIARD---YLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 639 dR~~i-I~~~~~~~~e~~~I~~~---~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
.||.+ +++..++.++-..|+.. .|.+............+.+++++|+.|..
T Consensus 325 GRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAe 379 (444)
T COG1220 325 GRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAE 379 (444)
T ss_pred CCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHH
Confidence 99997 89999999998777643 23333332333445568899999998764
No 137
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.15 E-value=1.1e-11 Score=131.97 Aligned_cols=79 Identities=25% Similarity=0.406 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccch
Q 005548 482 LNDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGK 560 (691)
Q Consensus 482 l~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~ 560 (691)
++++.+.+....++.+++ .+.+|+.++|+||+||||||++|+||++-.++.|+|.++|. ++..++.+ +..+|+++|.
T Consensus 8 i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~-~i~~lpp~-kR~ig~VFQ~ 85 (352)
T COG3842 8 IRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGE-DITDVPPE-KRPIGMVFQS 85 (352)
T ss_pred EEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE-ECCCCChh-hcccceeecC
Confidence 345566666666777777 78999999999999999999999999999999999999984 45554443 3457777776
Q ss_pred HH
Q 005548 561 MV 562 (691)
Q Consensus 561 i~ 562 (691)
..
T Consensus 86 YA 87 (352)
T COG3842 86 YA 87 (352)
T ss_pred cc
Confidence 43
No 138
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.14 E-value=2.4e-10 Score=137.45 Aligned_cols=186 Identities=18% Similarity=0.258 Sum_probs=120.0
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcC----------CeEEEEeCcc
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNR----------KFFRFSVGGL 540 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~----------~~~~i~~~~~ 540 (691)
+++.-.+.++|.++...++.+.+.. ....+.+|+||||||||++++.+|..+.. ..+.++++.+
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~r------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLSR------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHhc------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 3443445799999988877777643 24567899999999999999999988732 2333332221
Q ss_pred chhhhhhcccCcccccccchHHHHHHHhcc--cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccC
Q 005548 541 ADVAEIKGHRRTYIGAMPGKMVQCLKNVGT--ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDL 618 (691)
Q Consensus 541 ~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~--~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~ 618 (691)
+.| ..|.|....++...+..... .+.|+||||++.+......+......+.|-+ +. ..
T Consensus 241 -----~a~--~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~---------~l----~~ 300 (852)
T TIGR03346 241 -----IAG--AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKP---------AL----AR 300 (852)
T ss_pred -----hhc--chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhch---------hh----hc
Confidence 111 24566666666666665533 2459999999988742111111111122221 11 12
Q ss_pred CceEEEEEeCCC-----CCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhh
Q 005548 619 SKVLFVCTANVV-----ENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIF 688 (691)
Q Consensus 619 ~~vi~I~TsN~~-----~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii 688 (691)
+.+.+|++|+.. ..+++++.+||..|.+..|+.++...|++.+..+.. ..+ .+.++++++..++
T Consensus 301 g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e-~~~-----~v~~~d~~i~~~~ 369 (852)
T TIGR03346 301 GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYE-VHH-----GVRITDPAIVAAA 369 (852)
T ss_pred CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhc-ccc-----CCCCCHHHHHHHH
Confidence 568888888865 347899999999999999999999999987654432 222 3556777776655
No 139
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.13 E-value=3.8e-10 Score=135.28 Aligned_cols=182 Identities=19% Similarity=0.262 Sum_probs=123.2
Q ss_pred hhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc----------CCeEEEEeCccc
Q 005548 472 QKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN----------RKFFRFSVGGLA 541 (691)
Q Consensus 472 ~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~----------~~~~~i~~~~~~ 541 (691)
+..-.+.++|.++..+++.+.+... ...+++|+||||||||++++.+|..+. ..++.++++.+
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l- 246 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL- 246 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH-
Confidence 3334467999999998888887532 445789999999999999999998874 33444443221
Q ss_pred hhhhhhcccCcccccccchHHHHHHHhcccC-CEEEehhhhhhcccCC--C--CHHHHHHhhcCHHHHHHHHHhhccccc
Q 005548 542 DVAEIKGHRRTYIGAMPGKMVQCLKNVGTAN-PLVLIDEIDKLGRGHA--G--DPASALLELLDPEQNANFLDHYLDVPI 616 (691)
Q Consensus 542 ~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~-~VlllDEidkl~~~~~--~--~~~~~LL~~LD~~~~~~~~d~~~~~~~ 616 (691)
+.| .+|.|....++...+..+...+ .|+||||++.+..... + +..+.|...|.
T Consensus 247 ----~ag--~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~---------------- 304 (821)
T CHL00095 247 ----LAG--TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA---------------- 304 (821)
T ss_pred ----hcc--CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh----------------
Confidence 112 3567777777777776654433 4899999998874221 1 12222222211
Q ss_pred cCCceEEEEEeCCCC-----CCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 617 DLSKVLFVCTANVVE-----NIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 617 ~~~~vi~I~TsN~~~-----~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
.+.+.+|++|+..+ ..+++|.+||..|.+..++.++...|++...... .+.++ +.++++++..++.
T Consensus 305 -rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~-e~~~~-----v~i~deal~~i~~ 375 (821)
T CHL00095 305 -RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRY-EKHHN-----LSISDKALEAAAK 375 (821)
T ss_pred -CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHH-HHHcC-----CCCCHHHHHHHHH
Confidence 25678888888653 4678999999999999999999999988755432 23333 3378888877654
No 140
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.13 E-value=2e-11 Score=129.10 Aligned_cols=150 Identities=25% Similarity=0.326 Sum_probs=93.4
Q ss_pred HHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHH--------
Q 005548 492 FIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMV-------- 562 (691)
Q Consensus 492 ~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~-------- 562 (691)
..++.+++ .+++|++++|+||||+|||||+|+|++.+.+..|+|.+.|.....+ ....+..+|++++...
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~~~~~lT~~ 96 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYPELTVR 96 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCCCCccccHH
Confidence 34455555 6789999999999999999999999999999999999988543221 1111234666655521
Q ss_pred HHHHHhcc--cCCE--------EEehhh------hhhcccCCCC------HHHHHH------------hhcCHHHHHHHH
Q 005548 563 QCLKNVGT--ANPL--------VLIDEI------DKLGRGHAGD------PASALL------------ELLDPEQNANFL 608 (691)
Q Consensus 563 ~~l~~~~~--~~~V--------lllDEi------dkl~~~~~~~------~~~~LL------------~~LD~~~~~~~~ 608 (691)
..+..... ..+- -+++++ ++..+.++.+ .+.+|+ .+||+.....+.
T Consensus 97 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~ 176 (293)
T COG1131 97 ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176 (293)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHH
Confidence 11111000 0000 011111 1111222222 233333 589999888888
Q ss_pred HhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 609 DHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 609 d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
+.+..+..+ ++..|++|||.++.+ ..++||+.++
T Consensus 177 ~~l~~l~~~-g~~tvlissH~l~e~-~~~~d~v~il 210 (293)
T COG1131 177 ELLRELAKE-GGVTILLSTHILEEA-EELCDRVIIL 210 (293)
T ss_pred HHHHHHHhC-CCcEEEEeCCcHHHH-HHhCCEEEEE
Confidence 888877633 347888899999888 6779999766
No 141
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.13 E-value=1.7e-11 Score=111.54 Aligned_cols=119 Identities=30% Similarity=0.416 Sum_probs=67.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccC-----cccccccchHHHHHHHhcccCCEEEehhh
Q 005548 506 IICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRR-----TYIGAMPGKMVQCLKNVGTANPLVLIDEI 580 (691)
Q Consensus 506 ~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~-----~~vG~~~~~i~~~l~~~~~~~~VlllDEi 580 (691)
+++|.|+||+|||++++++|+.++..+.+|.+..-...+++.|..- ......++-+ ...|+++||+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPi---------f~~ill~DEi 71 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPI---------FTNILLADEI 71 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----------SSEEEEETG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChh---------hhceeeeccc
Confidence 5899999999999999999999999999999864344667776521 1111111111 1239999999
Q ss_pred hhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccC-CceEEEEEeCCCC-----CCChhhcCeEE
Q 005548 581 DKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDL-SKVLFVCTANVVE-----NIPNPLLDRME 642 (691)
Q Consensus 581 dkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~-~~vi~I~TsN~~~-----~l~~aLldR~~ 642 (691)
+++.+ ..+++||+.+...+... .+....+ ...+||+|.|..+ .++++++|||-
T Consensus 72 Nrapp----ktQsAlLeam~Er~Vt~-----~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 72 NRAPP----KTQSALLEAMEERQVTI-----DGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp GGS-H----HHHHHHHHHHHHSEEEE-----TTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ccCCH----HHHHHHHHHHHcCeEEe-----CCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 99864 46789998876522110 0011112 4578889999875 58999999984
No 142
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.12 E-value=2.9e-11 Score=121.60 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=41.7
Q ss_pred HHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 493 IAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 493 l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.++.+++ .+.+|+.++|+||+|||||||.+.||+...+..|+|.+.|.
T Consensus 17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~ 65 (248)
T COG1116 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGR 65 (248)
T ss_pred EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc
Confidence 3444555 68899999999999999999999999999999999988774
No 143
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.11 E-value=3.2e-11 Score=118.07 Aligned_cols=158 Identities=18% Similarity=0.229 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhh--hhhcccCcccccccc
Q 005548 483 NDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVA--EIKGHRRTYIGAMPG 559 (691)
Q Consensus 483 ~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~--~l~g~~~~~vG~~~~ 559 (691)
+++.+++.+.-.+.+++ .+.+|+.++++||+|||||||+|+|.+.-.++.|.|.+.|..... ++. ..+..+|+++|
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~-~~R~~vGmVFQ 84 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL-KLRRKVGMVFQ 84 (240)
T ss_pred EeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHH-HHHHhcCeecc
Confidence 34445555555566666 788999999999999999999999999999999999998832211 111 12456777777
Q ss_pred hHHHHHHHhcccCC-------------------------EEEehhhhhhcccCCCC------HHHHHH------------
Q 005548 560 KMVQCLKNVGTANP-------------------------LVLIDEIDKLGRGHAGD------PASALL------------ 596 (691)
Q Consensus 560 ~i~~~l~~~~~~~~-------------------------VlllDEidkl~~~~~~~------~~~~LL------------ 596 (691)
.+..+...+.-.|. |=+-|-.+..+...+++ .+.+|-
T Consensus 85 ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT 164 (240)
T COG1126 85 QFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT 164 (240)
T ss_pred cccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc
Confidence 64322222211110 11112222222222222 111211
Q ss_pred hhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 597 ELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 597 ~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
+.|||+....+++-+.++.. .+...|+.||..... ....||+.++
T Consensus 165 SALDPElv~EVL~vm~~LA~--eGmTMivVTHEM~FA-r~VadrviFm 209 (240)
T COG1126 165 SALDPELVGEVLDVMKDLAE--EGMTMIIVTHEMGFA-REVADRVIFM 209 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHH--cCCeEEEEechhHHH-HHhhheEEEe
Confidence 35899888888888877763 345555566665443 5677888654
No 144
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.10 E-value=2.5e-10 Score=116.23 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=87.1
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHH----------H
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMV----------Q 563 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~----------~ 563 (691)
+.+++ .+++|..++|+||||+|||||+|+|.+.+.+..|+|.+.+... ... ..+.++||+||+.. .
T Consensus 20 l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~-~~~--~~~~~IgYVPQ~~~~d~~fP~tV~d 96 (254)
T COG1121 20 LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPV-RKR--RKRLRIGYVPQKSSVDRSFPITVKD 96 (254)
T ss_pred eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccc-ccc--ccCCeEEEcCcccccCCCCCcCHHH
Confidence 34444 5789999999999999999999999999999999999876421 110 11357888888631 1
Q ss_pred HHHHhcc-cCCEEE-e-----hhhhh-------------hcccCCCC------HHHHHH------------hhcCHHHHH
Q 005548 564 CLKNVGT-ANPLVL-I-----DEIDK-------------LGRGHAGD------PASALL------------ELLDPEQNA 605 (691)
Q Consensus 564 ~l~~~~~-~~~Vll-l-----DEidk-------------l~~~~~~~------~~~~LL------------~~LD~~~~~ 605 (691)
....-.. ..+.+= + .+++. -....+++ .+.+|. +.+|+....
T Consensus 97 ~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~ 176 (254)
T COG1121 97 VVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK 176 (254)
T ss_pred HHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHH
Confidence 1111000 000000 0 01111 00111222 122222 477888888
Q ss_pred HHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 606 NFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 606 ~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.|.+.+.++..+ +..|++.||+...+ .+.+||+..+
T Consensus 177 ~i~~lL~~l~~e--g~tIl~vtHDL~~v-~~~~D~vi~L 212 (254)
T COG1121 177 EIYDLLKELRQE--GKTVLMVTHDLGLV-MAYFDRVICL 212 (254)
T ss_pred HHHHHHHHHHHC--CCEEEEEeCCcHHh-HhhCCEEEEE
Confidence 888877776633 67777788888877 6788988654
No 145
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.08 E-value=1.5e-10 Score=123.76 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=98.7
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-------CeEEEEeCccchhh-----
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNR-------KFFRFSVGGLADVA----- 544 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-------~~~~i~~~~~~~~~----- 544 (691)
.+++|++++++.+.-.... ....+++|.||||+||||+++++++.+.. ++......+..+..
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~ 81 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAID------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSST 81 (334)
T ss_pred HHhCCHHHHHHHHHHHHhc------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCC
Confidence 4789999998877654421 12368999999999999999999999842 11111111100110
Q ss_pred h----------hhcc--cCcccccc-------cchHH-HHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHH
Q 005548 545 E----------IKGH--RRTYIGAM-------PGKMV-QCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQN 604 (691)
Q Consensus 545 ~----------l~g~--~~~~vG~~-------~~~i~-~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~ 604 (691)
. +... ...-+|.. .+... +.-......++++++||++.+.. ..++.|++.|+..+.
T Consensus 82 ~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~----~~q~~Lle~mee~~v 157 (334)
T PRK13407 82 TMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED----HIVDLLLDVAQSGEN 157 (334)
T ss_pred cccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH----HHHHHHHHHHHcCCe
Confidence 0 0000 00011110 00000 00000122346999999999854 456788887764221
Q ss_pred HHHHHhhccccccCCceEEEEEeCCCC-CCChhhcCeEEE-EEEcCCCH-HHHHHHHHHHH
Q 005548 605 ANFLDHYLDVPIDLSKVLFVCTANVVE-NIPNPLLDRMEV-IAIAGYIT-DEKMHIARDYL 662 (691)
Q Consensus 605 ~~~~d~~~~~~~~~~~vi~I~TsN~~~-~l~~aLldR~~i-I~~~~~~~-~e~~~I~~~~l 662 (691)
..-.++. ... ....+++|+|+|..+ .+++++++||.+ +.+.++.. +++.+|+++..
T Consensus 158 ~v~r~G~-~~~-~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 158 VVEREGL-SIR-HPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred EEEECCe-EEe-cCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 0000110 011 124688889999755 588999999975 67766665 78888888743
No 146
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.07 E-value=1.1e-09 Score=119.92 Aligned_cols=158 Identities=22% Similarity=0.297 Sum_probs=95.6
Q ss_pred ccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC--eEEE---EeCccchhhh-hhcccCc
Q 005548 479 HYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRK--FFRF---SVGGLADVAE-IKGHRRT 552 (691)
Q Consensus 479 i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~--~~~i---~~~~~~~~~~-l~g~~~~ 552 (691)
+++-++..+.+...+. .+++++|+||||||||++|+.+|..+... ...+ .+..-....+ +.|.+..
T Consensus 177 ~~i~e~~le~l~~~L~--------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 177 LFIPETTIETILKRLT--------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred ccCCHHHHHHHHHHHh--------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC
Confidence 4444555555555543 46789999999999999999999988532 2222 2322112222 2355555
Q ss_pred cccccc--chHHHHHHHhcc---cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHH-------HHHh-hccccccCC
Q 005548 553 YIGAMP--GKMVQCLKNVGT---ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNAN-------FLDH-YLDVPIDLS 619 (691)
Q Consensus 553 ~vG~~~--~~i~~~l~~~~~---~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~-------~~d~-~~~~~~~~~ 619 (691)
++|+.. +-+..+...+.. .+.++||||+++...+ .+...+++.|+...... +.+. ...+.. ..
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~---kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~i-P~ 324 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS---KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYV-PE 324 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH---HhhhhhhhhccccccccccceeeeccccccccccC-CC
Confidence 666653 333344444432 2349999999987532 23345566666421110 0000 011222 37
Q ss_pred ceEEEEEeCCCC----CCChhhcCeEEEEEEcC
Q 005548 620 KVLFVCTANVVE----NIPNPLLDRMEVIAIAG 648 (691)
Q Consensus 620 ~vi~I~TsN~~~----~l~~aLldR~~iI~~~~ 648 (691)
++.||+|+|..+ .++.||.+||.+|.+.+
T Consensus 325 Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 325 NVYIIGLMNTADRSLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred CeEEEEecCccccchhhccHHHHhhhheEEecC
Confidence 999999999887 69999999999988776
No 147
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.07 E-value=7.4e-10 Score=113.62 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=92.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhh
Q 005548 503 QGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDK 582 (691)
Q Consensus 503 ~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidk 582 (691)
.+.+++|+||+|||||+|+++++..+......+.+-...... .+ . ......+. ...+++|||++.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~-------~~---~-~~~~~~~~----~~dlliiDdi~~ 108 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA-------WF---V-PEVLEGME----QLSLVCIDNIEC 108 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh-------hh---h-HHHHHHhh----hCCEEEEeChhh
Confidence 446899999999999999999998876433333322221100 00 0 11111111 224899999998
Q ss_pred hcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC-CC---CChhhcCeE---EEEEEcCCCHHHHH
Q 005548 583 LGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV-EN---IPNPLLDRM---EVIAIAGYITDEKM 655 (691)
Q Consensus 583 l~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~-~~---l~~aLldR~---~iI~~~~~~~~e~~ 655 (691)
+... ......|+..++.. + +.++..+|+|++.+ .. +.+.|.+|+ .++.+.+++.+++.
T Consensus 109 ~~~~--~~~~~~lf~l~n~~--------~-----e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~ 173 (235)
T PRK08084 109 IAGD--ELWEMAIFDLYNRI--------L-----ESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKL 173 (235)
T ss_pred hcCC--HHHHHHHHHHHHHH--------H-----HcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHH
Confidence 7532 12234455544431 0 12344455566543 33 568999999 68999999999999
Q ss_pred HHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 656 HIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 656 ~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
+++++..... .+.++++++++|+++
T Consensus 174 ~~l~~~a~~~----------~~~l~~~v~~~L~~~ 198 (235)
T PRK08084 174 QALQLRARLR----------GFELPEDVGRFLLKR 198 (235)
T ss_pred HHHHHHHHHc----------CCCCCHHHHHHHHHh
Confidence 9987755431 267999999999874
No 148
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.06 E-value=5.8e-11 Score=125.98 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchH
Q 005548 483 NDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKM 561 (691)
Q Consensus 483 ~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i 561 (691)
+++.+.+.+..++.+++ .+..|+.+.|+||+||||||++|+||++..++.|+|.++|. ++.++... ...+++++|..
T Consensus 7 ~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~-~vt~l~P~-~R~iamVFQ~y 84 (338)
T COG3839 7 KNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGR-DVTDLPPE-KRGIAMVFQNY 84 (338)
T ss_pred eeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE-ECCCCChh-HCCEEEEeCCc
Confidence 34444444432344455 67899999999999999999999999999999999999984 44443322 23466666663
No 149
>PRK06893 DNA replication initiation factor; Validated
Probab=99.06 E-value=7.5e-10 Score=113.12 Aligned_cols=144 Identities=11% Similarity=0.177 Sum_probs=91.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCC---eEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhh
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRK---FFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEI 580 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~---~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEi 580 (691)
.+.++|+||||||||+|++++|+.+... ...+.+.... . . .. ..+... ....+++|||+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~---~----------~-~~---~~~~~~-~~~dlLilDDi 100 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ---Y----------F-SP---AVLENL-EQQDLVCLDDL 100 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh---h----------h-hH---HHHhhc-ccCCEEEEeCh
Confidence 3458999999999999999999887432 2222221100 0 0 00 111111 23359999999
Q ss_pred hhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCC-CCCC---ChhhcCeEE---EEEEcCCCHHH
Q 005548 581 DKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV-VENI---PNPLLDRME---VIAIAGYITDE 653 (691)
Q Consensus 581 dkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~-~~~l---~~aLldR~~---iI~~~~~~~~e 653 (691)
+...... .....|++.++... +.++.++|+|+|. +..+ .+.+.+|+. ++.+..|+.++
T Consensus 101 ~~~~~~~--~~~~~l~~l~n~~~-------------~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~ 165 (229)
T PRK06893 101 QAVIGNE--EWELAIFDLFNRIK-------------EQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQ 165 (229)
T ss_pred hhhcCCh--HHHHHHHHHHHHHH-------------HcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHH
Confidence 9875321 12334555554311 1134556667765 3333 378899986 68999999999
Q ss_pred HHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 654 KMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 654 ~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
+.+|+++..... .+.++++++++|+++
T Consensus 166 ~~~iL~~~a~~~----------~l~l~~~v~~~L~~~ 192 (229)
T PRK06893 166 KIIVLQRNAYQR----------GIELSDEVANFLLKR 192 (229)
T ss_pred HHHHHHHHHHHc----------CCCCCHHHHHHHHHh
Confidence 999999877642 377999999999875
No 150
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.06 E-value=3.8e-10 Score=120.98 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=99.6
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch------------h-
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD------------V- 543 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~------------~- 543 (691)
..|+|++++|..+.-.+.- +...+++|.|+||+|||||+++|++.+..-.+.+.+..-.+ .
T Consensus 4 ~~ivgq~~~~~al~~~~~~------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 77 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIR 77 (337)
T ss_pred cccccHHHHHHHHHHHhcC------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhh
Confidence 4789999999887655542 23467999999999999999999999843222221110000 0
Q ss_pred ----------------hhhhcc--cCcccccccchHHHHH----------HHhcccCCEEEehhhhhhcccCCCCHHHHH
Q 005548 544 ----------------AEIKGH--RRTYIGAMPGKMVQCL----------KNVGTANPLVLIDEIDKLGRGHAGDPASAL 595 (691)
Q Consensus 544 ----------------~~l~g~--~~~~vG~~~~~i~~~l----------~~~~~~~~VlllDEidkl~~~~~~~~~~~L 595 (691)
.+++.. ....+|... +...+ ......++++|+||++.+.. ..++.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d--~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~----~~Q~~L 151 (337)
T TIGR02030 78 VDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLD--IERALTEGVKAFEPGLLARANRGILYIDEVNLLED----HLVDVL 151 (337)
T ss_pred hhcccccccccCCCCcCCCCCCCcccceecchh--HhhHhhcCCEEeecCcceeccCCEEEecChHhCCH----HHHHHH
Confidence 000000 001111110 00000 00112346999999999854 456788
Q ss_pred HhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC-CCChhhcCeEEE-EEEcCCCH-HHHHHHHHHH
Q 005548 596 LELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE-NIPNPLLDRMEV-IAIAGYIT-DEKMHIARDY 661 (691)
Q Consensus 596 L~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~-~l~~aLldR~~i-I~~~~~~~-~e~~~I~~~~ 661 (691)
++.|+..+.....++. .... ..++++|+|+|..+ .+++++++||.+ +.+..+.. +++.+|+++.
T Consensus 152 l~~l~~g~~~v~r~G~-~~~~-~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 152 LDVAASGWNVVEREGI-SIRH-PARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred HHHHHhCCeEEEECCE-EEEc-CCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhh
Confidence 8877642110000111 0111 14678888888755 689999999986 56666665 7778888773
No 151
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.05 E-value=4.3e-10 Score=115.09 Aligned_cols=45 Identities=29% Similarity=0.448 Sum_probs=40.2
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+++|++++|+||||||||||+|+|++.+.+..|+|.+.|.
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~ 64 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCC
Confidence 3444 67899999999999999999999999999999999999884
No 152
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.03 E-value=8.3e-11 Score=125.38 Aligned_cols=147 Identities=24% Similarity=0.260 Sum_probs=87.8
Q ss_pred Hhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHH--------HH
Q 005548 494 AVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMV--------QC 564 (691)
Q Consensus 494 ~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~--------~~ 564 (691)
++.+++ .+++|++++|+||||+|||||+++|++.+.++.|++.+.|..- .......+..+|++++... ..
T Consensus 22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~-~~~~~~~~~~ig~v~q~~~~~~~~tv~e~ 100 (306)
T PRK13537 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV-PSRARHARQRVGVVPQFDNLDPDFTVREN 100 (306)
T ss_pred EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEec-ccchHHHHhcEEEEeccCcCCCCCcHHHH
Confidence 344444 6789999999999999999999999999999999999887532 1111111234555555411 11
Q ss_pred HHHhcccCCE----------EEehh------hhhhcccCCCC------HHHHHH------------hhcCHHHHHHHHHh
Q 005548 565 LKNVGTANPL----------VLIDE------IDKLGRGHAGD------PASALL------------ELLDPEQNANFLDH 610 (691)
Q Consensus 565 l~~~~~~~~V----------lllDE------idkl~~~~~~~------~~~~LL------------~~LD~~~~~~~~d~ 610 (691)
+.......+. -+++. .++.....+++ .+.+|+ ..||+.....+.+.
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~ 180 (306)
T PRK13537 101 LLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER 180 (306)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 1100000000 00000 11111122222 122222 47899888888888
Q ss_pred hccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 611 YLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 611 ~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
+..+. . .+..+|++||..+.+ +.++||+.++
T Consensus 181 l~~l~-~-~g~till~sH~l~e~-~~~~d~i~il 211 (306)
T PRK13537 181 LRSLL-A-RGKTILLTTHFMEEA-ERLCDRLCVI 211 (306)
T ss_pred HHHHH-h-CCCEEEEECCCHHHH-HHhCCEEEEE
Confidence 87664 2 367788899988877 6789998665
No 153
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.02 E-value=4.4e-10 Score=115.32 Aligned_cols=82 Identities=28% Similarity=0.431 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccc--hhhhhhcccCccccccc
Q 005548 482 LNDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA--DVAEIKGHRRTYIGAMP 558 (691)
Q Consensus 482 l~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~--~~~~l~g~~~~~vG~~~ 558 (691)
+..+++.+..+.++.+++ .++.|+.++|+||+|+|||||+|+||+...++.|+|.+++.. |...+ ..+...||+.+
T Consensus 5 i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~-~~~~R~VGfvF 83 (345)
T COG1118 5 INNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL-AVRDRKVGFVF 83 (345)
T ss_pred ehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc-chhhcceeEEE
Confidence 345666666676666666 788999999999999999999999999999999999998841 33332 22345678887
Q ss_pred chHHHH
Q 005548 559 GKMVQC 564 (691)
Q Consensus 559 ~~i~~~ 564 (691)
|....+
T Consensus 84 Q~YALF 89 (345)
T COG1118 84 QHYALF 89 (345)
T ss_pred echhhc
Confidence 775433
No 154
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.99 E-value=6.1e-09 Score=105.18 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=103.8
Q ss_pred hhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEE-eCccchhhhhhcccCc
Q 005548 474 ILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFS-VGGLADVAEIKGHRRT 552 (691)
Q Consensus 474 ~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~-~~~~~~~~~l~g~~~~ 552 (691)
+-.++++|++..++.+.++.... +.+ .+..+++|+|+.|||||+++|++...+.....++. +.. .
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~F-l~G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k------------~ 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQF-LQG-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK------------E 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHH-HcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH------------H
Confidence 33458899999999997776422 112 35678999999999999999999998865543321 111 1
Q ss_pred ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCC
Q 005548 553 YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVEN 632 (691)
Q Consensus 553 ~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~ 632 (691)
.++..+. +...+.... ..-|+|+|++.- .........|-.+||. ++....+|++|.+|||+-..
T Consensus 90 ~L~~l~~-l~~~l~~~~-~kFIlf~DDLsF---e~~d~~yk~LKs~LeG-----------gle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 DLGDLPE-LLDLLRDRP-YKFILFCDDLSF---EEGDTEYKALKSVLEG-----------GLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred HhccHHH-HHHHHhcCC-CCEEEEecCCCC---CCCcHHHHHHHHHhcC-----------ccccCCCcEEEEEecchhhc
Confidence 1112221 222222111 122999998631 1122235556666664 22234589999999996432
Q ss_pred CCh-----------------------hhcCeEEE-EEEcCCCHHHHHHHHHHHHhHH
Q 005548 633 IPN-----------------------PLLDRMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 633 l~~-----------------------aLldR~~i-I~~~~~~~~e~~~I~~~~l~~~ 665 (691)
+++ +|.|||.+ |.|.+++.++-.+|++.++.+.
T Consensus 154 v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~ 210 (249)
T PF05673_consen 154 VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY 210 (249)
T ss_pred cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc
Confidence 211 46789975 8999999999999999999753
No 155
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.99 E-value=3.5e-09 Score=113.15 Aligned_cols=63 Identities=25% Similarity=0.510 Sum_probs=51.5
Q ss_pred hhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-------CeEEEEe
Q 005548 475 LDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNR-------KFFRFSV 537 (691)
Q Consensus 475 l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-------~~~~i~~ 537 (691)
++++++|+++++..+.+++.......-.+..+++|+||||+|||||+++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 33489999999999988876544333346688999999999999999999999976 7777776
No 156
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.99 E-value=5.8e-10 Score=119.63 Aligned_cols=173 Identities=16% Similarity=0.212 Sum_probs=100.9
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeE----EEEeCccc-h--hhhhhcc
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFF----RFSVGGLA-D--VAEIKGH 549 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~----~i~~~~~~-~--~~~l~g~ 549 (691)
.+++|++++|..+...+.-+ .-.+++|.||+||||||++|++++.+..... .+.+.-.. + ....++.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~ 90 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREA 90 (350)
T ss_pred HHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhh
Confidence 48999999999887776533 2246999999999999999999998853110 00000000 0 0000110
Q ss_pred cC------------c----ccccccchHH------HHHHH----------hcccCCEEEehhhhhhcccCCCCHHHHHHh
Q 005548 550 RR------------T----YIGAMPGKMV------QCLKN----------VGTANPLVLIDEIDKLGRGHAGDPASALLE 597 (691)
Q Consensus 550 ~~------------~----~vG~~~~~i~------~~l~~----------~~~~~~VlllDEidkl~~~~~~~~~~~LL~ 597 (691)
.. . -.|....++. ..+.. ....++++++||++.+.. ..++.|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~----~~Q~~LLe 166 (350)
T CHL00081 91 IQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD----HLVDILLD 166 (350)
T ss_pred hcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH----HHHHHHHH
Confidence 00 0 0111111110 11110 122356999999999864 45677887
Q ss_pred hcCHHHHHHHHHhhccccccCCceEEEEEeCCCC-CCChhhcCeEEE-EEEcCCC-HHHHHHHHHHH
Q 005548 598 LLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE-NIPNPLLDRMEV-IAIAGYI-TDEKMHIARDY 661 (691)
Q Consensus 598 ~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~-~l~~aLldR~~i-I~~~~~~-~~e~~~I~~~~ 661 (691)
.|+..+...-.++.. ... ..++++|+|.|..+ .+++++++||.+ +.+..++ .+++.+|+++.
T Consensus 167 am~e~~~~ier~G~s-~~~-p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 167 SAASGWNTVEREGIS-IRH-PARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred HHHhCCeEEeeCCee-eec-CCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 775422110001111 111 24688888888765 599999999986 6788777 48888888875
No 157
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.98 E-value=2.9e-10 Score=113.09 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=52.0
Q ss_pred ccchHHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccc
Q 005548 479 HYGLNDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA 541 (691)
Q Consensus 479 i~Gl~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~ 541 (691)
++-++++.+.+.+...+.+++ .+.+|+++.++||+|+|||||+|.|.+.+.+..|+|.+.|..
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~ 71 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGED 71 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcc
Confidence 344455666666666666666 789999999999999999999999999999999999987753
No 158
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.98 E-value=1.1e-09 Score=105.82 Aligned_cols=126 Identities=17% Similarity=0.252 Sum_probs=82.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh--cccCcccccccc---hHH--HHHHHh-ccc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK--GHRRTYIGAMPG---KMV--QCLKNV-GTA 571 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~--g~~~~~vG~~~~---~i~--~~l~~~-~~~ 571 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.+.+.+.. ..... ...+..+|+.++ ... -.+..+ ...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~-~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE-VSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-CCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999988742 21111 011234555432 111 122222 334
Q ss_pred CCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 572 NPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 572 ~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
++++++||... .||......+.+.+..+. . .+..+|++||..+.+ ..++||+.++
T Consensus 101 p~illlDEP~~---------------~LD~~~~~~l~~~l~~~~-~-~~~tiii~sh~~~~~-~~~~d~~~~l 155 (163)
T cd03216 101 ARLLILDEPTA---------------ALTPAEVERLFKVIRRLR-A-QGVAVIFISHRLDEV-FEIADRVTVL 155 (163)
T ss_pred CCEEEEECCCc---------------CCCHHHHHHHHHHHHHHH-H-CCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 45999999733 356666666666665443 1 255667778877666 5678888665
No 159
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=98.98 E-value=3.5e-09 Score=92.25 Aligned_cols=48 Identities=50% Similarity=0.916 Sum_probs=40.3
Q ss_pred eEEEEecCCCcccCCceeeEEeCCHhHHHHHHHHHhcCCCeEEEEEee
Q 005548 148 SVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLLK 195 (691)
Q Consensus 148 ~lPlfPL~~~VLfPg~~lpL~Ifepry~~~v~~~~~~~~~~~gv~l~k 195 (691)
.+|++|++++|+|||+++|+.|+++++++++++++++++++++++..+
T Consensus 1 ~lpviPl~~~vlfP~~~~pl~v~~~~~i~~i~~~~~~~~~~~i~~~~~ 48 (92)
T smart00464 1 TLPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRSQPYVIVFLLQ 48 (92)
T ss_pred CceEEEcCCCccCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 379999999999999999999999999999999998765534344433
No 160
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=3.5e-09 Score=113.40 Aligned_cols=157 Identities=17% Similarity=0.247 Sum_probs=103.5
Q ss_pred hccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccc
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIG 555 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG 555 (691)
+++++|++.+++.+...+.-.. -++.++|+||+|+|||++|+.+|+.+...... +...|...+.......++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~---~~h~D~~~~~~~~~~~i~ 74 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ---REYVDIIEFKPINKKSIG 74 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCC---CCCCCeEEeccccCCCCC
Confidence 3578999999999988886432 34678999999999999999999987432110 000011011000001111
Q ss_pred cccchHHHHHH---Hhc--ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC
Q 005548 556 AMPGKMVQCLK---NVG--TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV 630 (691)
Q Consensus 556 ~~~~~i~~~l~---~~~--~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~ 630 (691)
-..+..... ... ....|++||++|++.. ..+++|+..|+. ...+++||++++.+
T Consensus 75 --v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~----~a~naLLK~LEe---------------pp~~t~~il~~~~~ 133 (313)
T PRK05564 75 --VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE----QAQNAFLKTIEE---------------PPKGVFIILLCENL 133 (313)
T ss_pred --HHHHHHHHHHHhcCcccCCceEEEEechhhcCH----HHHHHHHHHhcC---------------CCCCeEEEEEeCCh
Confidence 011222222 111 1234999999999853 457788877764 34688888888888
Q ss_pred CCCChhhcCeEEEEEEcCCCHHHHHHHHHHH
Q 005548 631 ENIPNPLLDRMEVIAIAGYITDEKMHIARDY 661 (691)
Q Consensus 631 ~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~ 661 (691)
+.+.+.+.+||.++.|..++.++....+...
T Consensus 134 ~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 134 EQILDTIKSRCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred HhCcHHHHhhceeeeCCCcCHHHHHHHHHHH
Confidence 8888999999999999999998887666554
No 161
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=4.2e-09 Score=113.88 Aligned_cols=161 Identities=19% Similarity=0.284 Sum_probs=104.9
Q ss_pred hccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCe----EEEE---eCccchhhh-h-
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF----FRFS---VGGLADVAE-I- 546 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~----~~i~---~~~~~~~~~-l- 546 (691)
...++|++++...+...+.-.+ -++.++|+||+|+||||+++.+|+.+.... .... ..+...... +
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 3578999999999998887432 234599999999999999999999985421 1011 001111100 0
Q ss_pred hc-ccC----------------ccccccc-chHHHHHHHhcc--cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHH
Q 005548 547 KG-HRR----------------TYIGAMP-GKMVQCLKNVGT--ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNAN 606 (691)
Q Consensus 547 ~g-~~~----------------~~vG~~~-~~i~~~l~~~~~--~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~ 606 (691)
.+ |+. +.++... ..+...+..... ...|++|||++.+.. ..+++|+..|+.
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----~aanaLLk~LEE----- 167 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----NAANAILKTLEE----- 167 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----HHHHHHHHHHhc-----
Confidence 00 110 0010000 011222332222 234999999999964 346778877753
Q ss_pred HHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHH
Q 005548 607 FLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARD 660 (691)
Q Consensus 607 ~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~ 660 (691)
..++++||+.+|.++.+.+.+.+||..+.|.+++.++...++..
T Consensus 168 ----------pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 168 ----------PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSH 211 (351)
T ss_pred ----------CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 23577888888888888899999999999999999999888876
No 162
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.96 E-value=7.3e-09 Score=102.47 Aligned_cols=136 Identities=18% Similarity=0.274 Sum_probs=83.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCC--eEEEEeCc-----------cchhhhhhcccCcccccccchHHHHHHHhc-
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRK--FFRFSVGG-----------LADVAEIKGHRRTYIGAMPGKMVQCLKNVG- 569 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~--~~~i~~~~-----------~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~- 569 (691)
++.++|+||+|+|||++++.++..+... .....++. ..+...+.. ....++ -..+........
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~-~~~~~~--~~~i~~i~~~~~~ 90 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEP-EGQSIK--VDQVRELVEFLSR 90 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecc-ccCcCC--HHHHHHHHHHHcc
Confidence 4669999999999999999999987532 00000000 000000000 000011 012222122211
Q ss_pred ----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEE
Q 005548 570 ----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIA 645 (691)
Q Consensus 570 ----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~ 645 (691)
....|+++||++++.. +..+.|+..|+. ...+++||+++|....+.+++.+|+.++.
T Consensus 91 ~~~~~~~kviiide~~~l~~----~~~~~Ll~~le~---------------~~~~~~~il~~~~~~~l~~~i~sr~~~~~ 151 (188)
T TIGR00678 91 TPQESGRRVVIIEDAERMNE----AAANALLKTLEE---------------PPPNTLFILITPSPEKLLPTIRSRCQVLP 151 (188)
T ss_pred CcccCCeEEEEEechhhhCH----HHHHHHHHHhcC---------------CCCCeEEEEEECChHhChHHHHhhcEEee
Confidence 1234999999999854 235566665542 23567888888887889899999999999
Q ss_pred EcCCCHHHHHHHHHHH
Q 005548 646 IAGYITDEKMHIARDY 661 (691)
Q Consensus 646 ~~~~~~~e~~~I~~~~ 661 (691)
|.+++.++...++...
T Consensus 152 ~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ 167 (188)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 9999999887766553
No 163
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.96 E-value=1.8e-08 Score=110.13 Aligned_cols=172 Identities=18% Similarity=0.206 Sum_probs=99.8
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc---------CCeEEEEeCccchhhh--
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN---------RKFFRFSVGGLADVAE-- 545 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---------~~~~~i~~~~~~~~~~-- 545 (691)
+.++|.++..+.+..++.-. +. -..+.+++++||||+|||++++.++..+. ..+..+++........
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~-~~-~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPI-LR-GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHH-Hc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 36777777777776666421 11 13456799999999999999999998763 2345555544332111
Q ss_pred ------hh--cccCcccccccchHHH-HHHHhc--ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 546 ------IK--GHRRTYIGAMPGKMVQ-CLKNVG--TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 546 ------l~--g~~~~~vG~~~~~i~~-~l~~~~--~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
+. +......|........ .+.... ....|++|||+|.+... ..+....|+...+. .
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-~~~~L~~l~~~~~~------------~ 159 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-DDDLLYQLSRARSN------------G 159 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-CcHHHHhHhccccc------------c
Confidence 11 1100001111111111 112111 12238999999999622 22222222222110 0
Q ss_pred cccCCceEEEEEeCCCC---CCChhhcCeEE--EEEEcCCCHHHHHHHHHHHHh
Q 005548 615 PIDLSKVLFVCTANVVE---NIPNPLLDRME--VIAIAGYITDEKMHIARDYLE 663 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~---~l~~aLldR~~--iI~~~~~~~~e~~~I~~~~l~ 663 (691)
.....++.+|+++|.++ .+++.+.+||. .+.|++|+.++..+|++..+.
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 11225788899999875 46677778884 689999999999999998875
No 164
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.95 E-value=1e-09 Score=108.52 Aligned_cols=155 Identities=23% Similarity=0.363 Sum_probs=69.3
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc--------
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG-------- 548 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g-------- 548 (691)
.+|.|++.+|..+.-+.+ .+++++|+||||||||++|+++...+..-...=.+ +...+..+.+
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~l-e~~~i~s~~~~~~~~~~~ 73 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEAL-EVSKIYSVAGLGPDEGLI 73 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCE-SS--S-TT---S---EEE
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHh-hhccccccccCCCCCcee
Confidence 589999999998877766 35799999999999999999999998533211000 0011111110
Q ss_pred -cc-----------Cccccc----ccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhc
Q 005548 549 -HR-----------RTYIGA----MPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYL 612 (691)
Q Consensus 549 -~~-----------~~~vG~----~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~ 612 (691)
.+ ...+|. .||. .+...++|+|+||+..+. ..+.+.|++.|+.......... .
T Consensus 74 ~~~Pfr~phhs~s~~~liGgg~~~~PGe------islAh~GVLflDE~~ef~----~~vld~Lr~ple~g~v~i~R~~-~ 142 (206)
T PF01078_consen 74 RQRPFRAPHHSASEAALIGGGRPPRPGE------ISLAHRGVLFLDELNEFD----RSVLDALRQPLEDGEVTISRAG-G 142 (206)
T ss_dssp E---EEEE-TT--HHHHHEEGGGEEE-C------GGGGTTSEEEECETTTS-----HHHHHHHHHHHHHSBEEEEETT-E
T ss_pred cCCCcccCCCCcCHHHHhCCCcCCCcCH------HHHhcCCEEEechhhhcC----HHHHHHHHHHHHCCeEEEEECC-c
Confidence 00 000111 1111 133467799999997764 3567777776654211100000 0
Q ss_pred cccccCCceEEEEEeCCC-----------------------CCCChhhcCeEEE-EEEcCCCHH
Q 005548 613 DVPIDLSKVLFVCTANVV-----------------------ENIPNPLLDRMEV-IAIAGYITD 652 (691)
Q Consensus 613 ~~~~~~~~vi~I~TsN~~-----------------------~~l~~aLldR~~i-I~~~~~~~~ 652 (691)
.+.. ..+..+|+|+|.- ..+..+|+|||++ +.++..+.+
T Consensus 143 ~~~~-Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 143 SVTY-PARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp EEEE-B--EEEEEEE-S-----------------------------------------------
T ss_pred eEEE-ecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 1111 2578899999942 3377788999986 566655443
No 165
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.95 E-value=6.6e-09 Score=111.28 Aligned_cols=142 Identities=24% Similarity=0.295 Sum_probs=93.9
Q ss_pred cccchHHHHHHHHHHHHhccccCCCCCce-EEEEcCCCCcHHHHHHHHHHHhcC------------------------Ce
Q 005548 478 DHYGLNDVKERILEFIAVGKLRGISQGKI-ICLSGPPGVGKTSIGRSIARALNR------------------------KF 532 (691)
Q Consensus 478 ~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~-vlL~GPpGtGKTtLakaLA~~l~~------------------------~~ 532 (691)
+++|.+.+...+..+..-. .+.++ ++|+||||+|||++|.++|+.+.. ++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~-----~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES-----GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CcccchhHHHHHHHHHHhc-----CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence 4566666666666665522 13455 999999999999999999999873 33
Q ss_pred EEEEeCccchhhhhhcccCcccccccchHHHHHHHh---c--ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHH
Q 005548 533 FRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNV---G--TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANF 607 (691)
Q Consensus 533 ~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~---~--~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~ 607 (691)
..++-++. .........+....... . ....|++|||+|.+.. +.+++|+..+..
T Consensus 77 lel~~s~~-----------~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~----~A~nallk~lEe------ 135 (325)
T COG0470 77 LELNPSDL-----------RKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE----DAANALLKTLEE------ 135 (325)
T ss_pred EEeccccc-----------CCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH----HHHHHHHHHhcc------
Confidence 33332221 11111111122222221 1 1234999999999965 567777777654
Q ss_pred HHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHH
Q 005548 608 LDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEK 654 (691)
Q Consensus 608 ~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~ 654 (691)
...++.||+++|.+..+-+++.+||.++.|.+++....
T Consensus 136 ---------p~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 136 ---------PPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred ---------CCCCeEEEEEcCChhhccchhhhcceeeecCCchHHHH
Confidence 34789999999999988889999999999988554443
No 166
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.94 E-value=1.3e-09 Score=117.72 Aligned_cols=147 Identities=24% Similarity=0.279 Sum_probs=88.9
Q ss_pred Hhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchH--------HHH
Q 005548 494 AVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKM--------VQC 564 (691)
Q Consensus 494 ~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i--------~~~ 564 (691)
++.+++ .+.+|++++|+||||+|||||+++|++.+.+..|++.+.|... .......+..+|++++.. ...
T Consensus 56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~-~~~~~~~~~~ig~v~q~~~~~~~~tv~e~ 134 (340)
T PRK13536 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV-PARARLARARIGVVPQFDNLDLEFTVREN 134 (340)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEEC-CcchHHHhccEEEEeCCccCCCCCcHHHH
Confidence 344555 6789999999999999999999999999999999999988532 111111133456655441 111
Q ss_pred HHHhcccCCE----------EEehh------hhhhcccCCCC------HHHHHH------------hhcCHHHHHHHHHh
Q 005548 565 LKNVGTANPL----------VLIDE------IDKLGRGHAGD------PASALL------------ELLDPEQNANFLDH 610 (691)
Q Consensus 565 l~~~~~~~~V----------lllDE------idkl~~~~~~~------~~~~LL------------~~LD~~~~~~~~d~ 610 (691)
+.......+. -+++. .++.....+++ .+.+|+ ..||+.....+.+.
T Consensus 135 l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~ 214 (340)
T PRK13536 135 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 214 (340)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 1100000000 00110 01111122222 122333 48899888888888
Q ss_pred hccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 611 YLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 611 ~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
+..+.. .+..+|++||..+.+ +.++||+.++
T Consensus 215 l~~l~~--~g~tilisSH~l~e~-~~~~d~i~il 245 (340)
T PRK13536 215 LRSLLA--RGKTILLTTHFMEEA-ERLCDRLCVL 245 (340)
T ss_pred HHHHHh--CCCEEEEECCCHHHH-HHhCCEEEEE
Confidence 877642 366788888888877 6789999766
No 167
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=5.5e-09 Score=111.44 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=106.9
Q ss_pred hccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCe-------EEEEeCccchhhhh--
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF-------FRFSVGGLADVAEI-- 546 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~-------~~i~~~~~~~~~~l-- 546 (691)
+++++|++.+++.+...+.-.++ ++.++|+||.|+||+++|.++|+.+.... ..+.-+...|...+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl-----~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p 77 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRI-----APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEP 77 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEec
Confidence 46899999999999998875433 47899999999999999999999874332 00000011110000
Q ss_pred ----hccc------------Cc---ccccc-cchHHHHHHHhcc--cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHH
Q 005548 547 ----KGHR------------RT---YIGAM-PGKMVQCLKNVGT--ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQN 604 (691)
Q Consensus 547 ----~g~~------------~~---~vG~~-~~~i~~~l~~~~~--~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~ 604 (691)
.|.. .+ .++.. ...+...+..... ...|++||+++++.. ..+++||..|+.
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----~aaNaLLK~LEE--- 150 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----AAANALLKTLEE--- 150 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH----HHHHHHHHHHhC---
Confidence 0000 00 00000 0112222222211 234999999999853 457888888864
Q ss_pred HHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHH
Q 005548 605 ANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYL 662 (691)
Q Consensus 605 ~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l 662 (691)
. .+++||++++.++.+.+.+.+|+..+.|.+++.++..+++....
T Consensus 151 ------------P-p~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 151 ------------P-GNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ------------C-CCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 2 36788888888899989999999999999999999988887754
No 168
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=2.9e-09 Score=114.65 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=102.5
Q ss_pred hccccc-hHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCe--EEEEeCccchhhhhh-c-cc
Q 005548 476 DEDHYG-LNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF--FRFSVGGLADVAEIK-G-HR 550 (691)
Q Consensus 476 ~~~i~G-l~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~--~~i~~~~~~~~~~l~-g-~~ 550 (691)
++.++| ++.+++.+...+.-.++ ++.++|+||+|+|||++|+++|+.+.... ....|+....-..+. + |+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l-----~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hp 78 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRL-----SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHP 78 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCC
Confidence 345666 89999988888764332 45689999999999999999999974321 111111100000000 0 00
Q ss_pred Cc-cc---ccc--cchHHHHH---HHh--cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCC
Q 005548 551 RT-YI---GAM--PGKMVQCL---KNV--GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLS 619 (691)
Q Consensus 551 ~~-~v---G~~--~~~i~~~l---~~~--~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~ 619 (691)
.- ++ |.. -..+.... ... .....|++|||++++.. ..+++|+..|+. ..+
T Consensus 79 D~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~----~a~NaLLK~LEE---------------Pp~ 139 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA----SAANSLLKFLEE---------------PSG 139 (329)
T ss_pred CEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH----HHHHHHHHHhcC---------------CCC
Confidence 00 00 000 01122221 111 11334999999999853 457888888874 346
Q ss_pred ceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHH
Q 005548 620 KVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARD 660 (691)
Q Consensus 620 ~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~ 660 (691)
+++||++++....+.+++.+|+.++.|.+++.++...++..
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 88899999888888899999999999999999887665543
No 169
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=3.4e-09 Score=115.22 Aligned_cols=165 Identities=17% Similarity=0.265 Sum_probs=106.3
Q ss_pred hhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCe--E---------EEEeCccch
Q 005548 474 ILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF--F---------RFSVGGLAD 542 (691)
Q Consensus 474 ~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~--~---------~i~~~~~~~ 542 (691)
.-..+++|++++++.+.+.+.-.++ ++.++|+||+|+||+++|.++|+.+.... . .+...+...
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl-----~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~ 90 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRL-----HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP 90 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh
Confidence 3445899999999999988875432 35699999999999999999999984321 0 000011111
Q ss_pred hhh-h--hcccCc-cc-------c------cccchHHH---HHHHhcc--cCCEEEehhhhhhcccCCCCHHHHHHhhcC
Q 005548 543 VAE-I--KGHRRT-YI-------G------AMPGKMVQ---CLKNVGT--ANPLVLIDEIDKLGRGHAGDPASALLELLD 600 (691)
Q Consensus 543 ~~~-l--~g~~~~-~v-------G------~~~~~i~~---~l~~~~~--~~~VlllDEidkl~~~~~~~~~~~LL~~LD 600 (691)
... + ..|+.- ++ | ..-..+.. .+..... ...|++|||+|.+.. ..+++|+..++
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~----~aanaLLK~LE 166 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA----NAANALLKVLE 166 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH----HHHHHHHHHHh
Confidence 000 0 001100 00 0 00111222 1121111 223999999998853 45677777665
Q ss_pred HHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHH
Q 005548 601 PEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYL 662 (691)
Q Consensus 601 ~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l 662 (691)
. ...+++||++||.++.+.+.+.+||..+.|.+++.++..+++....
T Consensus 167 e---------------pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 167 E---------------PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred c---------------CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 3 2357888999999888888999999999999999999988887653
No 170
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.93 E-value=8.4e-09 Score=105.15 Aligned_cols=139 Identities=12% Similarity=0.168 Sum_probs=88.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEeh
Q 005548 502 SQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLID 578 (691)
Q Consensus 502 ~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllD 578 (691)
..+.+++|+||+|||||+|++++++.+. .....+++.... . .+. ......++++|
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~---~------------------~~~-~~~~~~~liiD 97 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL---L------------------AFD-FDPEAELYAVD 97 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH---H------------------HHh-hcccCCEEEEe
Confidence 4567899999999999999999998863 334444432211 0 000 11234599999
Q ss_pred hhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC---CCChhhcCeE---EEEEEcCCCHH
Q 005548 579 EIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE---NIPNPLLDRM---EVIAIAGYITD 652 (691)
Q Consensus 579 Eidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~---~l~~aLldR~---~iI~~~~~~~~ 652 (691)
|++.+.. .....|+..++... .....++|+|++... .+.+.+.+|+ ..+.+++++.+
T Consensus 98 di~~l~~----~~~~~L~~~~~~~~-------------~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~ 160 (227)
T PRK08903 98 DVERLDD----AQQIALFNLFNRVR-------------AHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDA 160 (227)
T ss_pred ChhhcCc----hHHHHHHHHHHHHH-------------HcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHH
Confidence 9998743 23445555543211 112334555655422 2446677787 56899999998
Q ss_pred HHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 653 EKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 653 e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
+...++..+.... .+.++++++++|++
T Consensus 161 ~~~~~l~~~~~~~----------~v~l~~~al~~L~~ 187 (227)
T PRK08903 161 DKIAALKAAAAER----------GLQLADEVPDYLLT 187 (227)
T ss_pred HHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 8888777655431 26688999998876
No 171
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.93 E-value=1.9e-09 Score=105.52 Aligned_cols=125 Identities=20% Similarity=0.190 Sum_probs=77.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehh
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDE 579 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDE 579 (691)
.+++|+.++|+||||+|||||+++|++.+.+..|+|.+.+.. +.-...... .-|...+++ .........++++++||
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-i~~~~q~~~-LSgGq~qrv-~laral~~~p~lllLDE 97 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-PVYKPQYID-LSGGELQRV-AIAAALLRNATFYLFDE 97 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-EEEEcccCC-CCHHHHHHH-HHHHHHhcCCCEEEEEC
Confidence 457899999999999999999999999999999999987632 111110000 111111111 22222233455999999
Q ss_pred hhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 580 IDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 580 idkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
... .||+.....+.+.+.....+ .+..+|++||..+.+ ..+++|+.++
T Consensus 98 Pts---------------~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~-~~~~d~i~~l 145 (177)
T cd03222 98 PSA---------------YLDIEQRLNAARAIRRLSEE-GKKTALVVEHDLAVL-DYLSDRIHVF 145 (177)
T ss_pred Ccc---------------cCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCHHHH-HHhCCEEEEE
Confidence 732 35666555555555544322 235666777777665 5677888655
No 172
>PRK08727 hypothetical protein; Validated
Probab=98.93 E-value=5.5e-09 Score=107.06 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=92.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhh
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKL 583 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl 583 (691)
...++|+||+|||||+|+++++..+......+.+-...+ . ...+...+.... ...+++|||++.+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~---~-----------~~~~~~~~~~l~-~~dlLiIDDi~~l 105 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA---A-----------AGRLRDALEALE-GRSLVALDGLESI 105 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH---h-----------hhhHHHHHHHHh-cCCEEEEeCcccc
Confidence 356999999999999999999988754332222222111 0 011222222222 3349999999987
Q ss_pred cccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCC-CCC---CChhhcCeE---EEEEEcCCCHHHHHH
Q 005548 584 GRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV-VEN---IPNPLLDRM---EVIAIAGYITDEKMH 656 (691)
Q Consensus 584 ~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~-~~~---l~~aLldR~---~iI~~~~~~~~e~~~ 656 (691)
.... .....++..++. .. + .+..+|+|+|. +.. +.+++.+|+ .++.+++|+.+++..
T Consensus 106 ~~~~--~~~~~lf~l~n~---------~~----~-~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~ 169 (233)
T PRK08727 106 AGQR--EDEVALFDFHNR---------AR----A-AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAA 169 (233)
T ss_pred cCCh--HHHHHHHHHHHH---------HH----H-cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHH
Confidence 5321 123344443332 10 1 24446667774 333 457899994 578999999999999
Q ss_pred HHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 657 IARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 657 I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
|+++..... .+.++++++.+|+++
T Consensus 170 iL~~~a~~~----------~l~l~~e~~~~La~~ 193 (233)
T PRK08727 170 VLRERAQRR----------GLALDEAAIDWLLTH 193 (233)
T ss_pred HHHHHHHHc----------CCCCCHHHHHHHHHh
Confidence 999876642 367999999998864
No 173
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.92 E-value=2.9e-09 Score=119.66 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=93.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCC-----eEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEeh
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRK-----FFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLID 578 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~-----~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllD 578 (691)
..+++|+||+|+|||+|+++++..+... ...+++..+ ..++... ........+........+++||
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~dlLiiD 218 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF--TNDFVNA-------LRNNTMEEFKEKYRSVDVLLID 218 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHH-------HHcCcHHHHHHHHhcCCEEEEe
Confidence 3569999999999999999999988432 333332221 1111111 0000111222222234599999
Q ss_pred hhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC-CC---CChhhcCeEE---EEEEcCCCH
Q 005548 579 EIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV-EN---IPNPLLDRME---VIAIAGYIT 651 (691)
Q Consensus 579 Eidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~-~~---l~~aLldR~~---iI~~~~~~~ 651 (691)
|++.+.... .....|+..++. .. +.+.. +|+|+|.. .. +++.+.+|+. ++.+.+|+.
T Consensus 219 Di~~l~~~~--~~~~~l~~~~n~---------l~----~~~~~-iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 219 DIQFLAGKE--RTQEEFFHTFNA---------LH----EAGKQ-IVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDL 282 (450)
T ss_pred hhhhhcCCH--HHHHHHHHHHHH---------HH----HCCCc-EEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCH
Confidence 999875321 123445554443 11 11223 45566643 33 6678999994 689999999
Q ss_pred HHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 652 DEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 652 ~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
+++.+|++..+... .+.++++++++|+++
T Consensus 283 ~~r~~il~~~~~~~----------~~~l~~e~l~~ia~~ 311 (450)
T PRK00149 283 ETRIAILKKKAEEE----------GIDLPDEVLEFIAKN 311 (450)
T ss_pred HHHHHHHHHHHHHc----------CCCCCHHHHHHHHcC
Confidence 99999999987742 366899999998764
No 174
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.92 E-value=3.9e-09 Score=117.11 Aligned_cols=152 Identities=19% Similarity=0.186 Sum_probs=92.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEeh
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLID 578 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllD 578 (691)
..+++|+||+|+|||+|+++++..+. .....+++..+ ...+...... +.. ..+........+++||
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~--~~~~~~~~~~------~~~-~~~~~~~~~~dlLiiD 206 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF--TNDFVNALRN------NKM-EEFKEKYRSVDLLLID 206 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH--HHHHHHHHHc------CCH-HHHHHHHHhCCEEEEe
Confidence 45789999999999999999998873 23333433221 1111110000 011 1122212234599999
Q ss_pred hhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCC-C---CCCChhhcCeEE---EEEEcCCCH
Q 005548 579 EIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV-V---ENIPNPLLDRME---VIAIAGYIT 651 (691)
Q Consensus 579 Eidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~-~---~~l~~aLldR~~---iI~~~~~~~ 651 (691)
|++.+... ......|+..++.. + + .+..+|+|+|. + ..+++.+.+|+. ++.+.+|+.
T Consensus 207 Di~~l~~~--~~~~~~l~~~~n~~--------~-----~-~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 207 DIQFLAGK--ERTQEEFFHTFNAL--------H-----E-NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred hhhhhcCC--HHHHHHHHHHHHHH--------H-----H-CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCH
Confidence 99987532 11234455554421 1 1 12335556664 3 335678899994 589999999
Q ss_pred HHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 652 DEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 652 ~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
+++..|++..+... .+.++++++++|+++
T Consensus 271 ~~r~~il~~~~~~~----------~~~l~~e~l~~ia~~ 299 (405)
T TIGR00362 271 ETRLAILQKKAEEE----------GLELPDEVLEFIAKN 299 (405)
T ss_pred HHHHHHHHHHHHHc----------CCCCCHHHHHHHHHh
Confidence 99999999987752 366889999998754
No 175
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=3.4e-09 Score=103.28 Aligned_cols=124 Identities=21% Similarity=0.367 Sum_probs=79.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh-cccCcccccccchH-----------------
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK-GHRRTYIGAMPGKM----------------- 561 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~-g~~~~~vG~~~~~i----------------- 561 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|++.+.|.. ..... ...+..+|+.++..
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~-~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD-LRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEE-hhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 567999999999999999999999999999889999887743 11110 00012234433320
Q ss_pred -HHHHHHh-cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcC
Q 005548 562 -VQCLKNV-GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLD 639 (691)
Q Consensus 562 -~~~l~~~-~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLld 639 (691)
.-.+..+ ...+.++++||... .||......+.+.+..+. .+..+|++||..+.+ +. +|
T Consensus 103 ~rl~la~al~~~p~llllDEP~~---------------gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~-~~-~d 162 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATS---------------ALDPETEALILEALRALA---KGKTVIVIAHRLSTI-RD-AD 162 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCc---------------CCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHH-Hh-CC
Confidence 0112222 23445999999732 366666666666665543 246677788888777 44 78
Q ss_pred eEEEE
Q 005548 640 RMEVI 644 (691)
Q Consensus 640 R~~iI 644 (691)
|+.++
T Consensus 163 ~~~~l 167 (171)
T cd03228 163 RIIVL 167 (171)
T ss_pred EEEEE
Confidence 87655
No 176
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.91 E-value=3e-09 Score=100.73 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=77.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccc------hHHHHHHHhcccCC
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPG------KMVQCLKNVGTANP 573 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~------~i~~~l~~~~~~~~ 573 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.+.. .+++.++ +...........++
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~-----------~i~~~~~lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-----------KIGYFEQLSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE-----------EEEEEccCCHHHHHHHHHHHHHhcCCC
Confidence 567999999999999999999999999999999999887631 2333321 11112222233455
Q ss_pred EEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 574 LVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 574 VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
++++||... .||......+.+.+..+ + ..++++||..+.+ ..++||+.++
T Consensus 91 illlDEP~~---------------~LD~~~~~~l~~~l~~~----~-~til~~th~~~~~-~~~~d~v~~l 140 (144)
T cd03221 91 LLLLDEPTN---------------HLDLESIEALEEALKEY----P-GTVILVSHDRYFL-DQVATKIIEL 140 (144)
T ss_pred EEEEeCCcc---------------CCCHHHHHHHHHHHHHc----C-CEEEEEECCHHHH-HHhCCEEEEE
Confidence 999999743 35666556666655443 2 3566677877666 5678888665
No 177
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.91 E-value=1.2e-08 Score=116.12 Aligned_cols=183 Identities=18% Similarity=0.270 Sum_probs=105.3
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhcccc------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhh
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLR------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVA 544 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~ 544 (691)
....+...++|++.+|+.+.-.+.-.... .+...-+++|+|+||+|||+++++++....+..+.. ..+. +..
T Consensus 197 l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~-~~~~-~~~ 274 (509)
T smart00350 197 LSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTT-GKGS-SAV 274 (509)
T ss_pred HHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcC-CCCC-CcC
Confidence 44566678999999988776555422100 122234799999999999999999999876542211 0000 100
Q ss_pred hhhccc--CcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceE
Q 005548 545 EIKGHR--RTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVL 622 (691)
Q Consensus 545 ~l~g~~--~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi 622 (691)
.+.+.. ....|... ...-......++++++||++++.. .....|++.|+..+..--..+. ... -..++.
T Consensus 275 ~l~~~~~~~~~~g~~~---~~~G~l~~A~~Gil~iDEi~~l~~----~~q~~L~e~me~~~i~i~k~G~-~~~-l~~~~~ 345 (509)
T smart00350 275 GLTAAVTRDPETREFT---LEGGALVLADNGVCCIDEFDKMDD----SDRTAIHEAMEQQTISIAKAGI-TTT-LNARCS 345 (509)
T ss_pred CccccceEccCcceEE---ecCccEEecCCCEEEEechhhCCH----HHHHHHHHHHhcCEEEEEeCCE-EEE-ecCCcE
Confidence 111000 00001100 000011223466999999999864 3456777776542100000000 001 124688
Q ss_pred EEEEeCCCC-------------CCChhhcCeEEEE--EEcCCCHHHHHHHHHHHHhH
Q 005548 623 FVCTANVVE-------------NIPNPLLDRMEVI--AIAGYITDEKMHIARDYLEK 664 (691)
Q Consensus 623 ~I~TsN~~~-------------~l~~aLldR~~iI--~~~~~~~~e~~~I~~~~l~~ 664 (691)
+|+|+|..+ .++++++|||+++ ....++.+...+|+++.+..
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 999999763 4899999999753 45667777778888886653
No 178
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.91 E-value=2.9e-09 Score=106.48 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=41.6
Q ss_pred Hhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 494 AVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 494 ~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
++.+++ .+.+|+.++|+|++|||||||+++|++...+..|.|.+.|.
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~ 69 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK 69 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCc
Confidence 344455 67899999999999999999999999999999999999883
No 179
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.90 E-value=2.3e-09 Score=114.13 Aligned_cols=141 Identities=25% Similarity=0.338 Sum_probs=82.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchH--------HHHHHHhccc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKM--------VQCLKNVGTA 571 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i--------~~~l~~~~~~ 571 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.. ........+..+|++++.. ...+......
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~-~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 93 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD-VVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL 93 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-cccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 578999999999999999999999999999999999988742 1110000122345544431 1111100000
Q ss_pred CCE----------EEehh------hhhhcccCCCC------HHHHHH------------hhcCHHHHHHHHHhhcccccc
Q 005548 572 NPL----------VLIDE------IDKLGRGHAGD------PASALL------------ELLDPEQNANFLDHYLDVPID 617 (691)
Q Consensus 572 ~~V----------lllDE------idkl~~~~~~~------~~~~LL------------~~LD~~~~~~~~d~~~~~~~~ 617 (691)
..+ -+++. .++.....+++ .+.+|+ ..||+.....+.+.+..+. +
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~ 172 (302)
T TIGR01188 94 YGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK-E 172 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-h
Confidence 000 00111 11111222222 122333 5789988888888777654 2
Q ss_pred CCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 618 LSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 618 ~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.+..+|++||..+.+ ..++||+.++
T Consensus 173 -~g~tvi~~sH~~~~~-~~~~d~v~~l 197 (302)
T TIGR01188 173 -EGVTILLTTHYMEEA-DKLCDRIAII 197 (302)
T ss_pred -CCCEEEEECCCHHHH-HHhCCEEEEE
Confidence 356778888887766 5678988665
No 180
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.90 E-value=3.9e-08 Score=108.58 Aligned_cols=189 Identities=18% Similarity=0.176 Sum_probs=108.1
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCccchhh-------
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGLADVA------- 544 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~~~~~------- 544 (691)
+.++|-++..+.+..++.-. +. -..+.+++++||||+|||++++.+++.+. ..+..+++.......
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~-~~-~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPA-LR-GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHH-hC-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 45667777666666665321 11 13446789999999999999999998873 345566654432211
Q ss_pred -hhhcccCcccccccchHHHHHHHhcc---cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCc
Q 005548 545 -EIKGHRRTYIGAMPGKMVQCLKNVGT---ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSK 620 (691)
Q Consensus 545 -~l~g~~~~~vG~~~~~i~~~l~~~~~---~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~ 620 (691)
.+.+......|.........+..... ...|++|||+|.+......+....|+..++. . ...+
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~------------~--~~~~ 173 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE------------Y--PGAR 173 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc------------c--CCCe
Confidence 11111111112112222222222211 2238999999998622222333333333221 1 1236
Q ss_pred eEEEEEeCCCC---CCChhhcCeE--EEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 621 VLFVCTANVVE---NIPNPLLDRM--EVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 621 vi~I~TsN~~~---~l~~aLldR~--~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
+.+|+++|..+ .+++.+.+|+ ..|.|++|+.++..+|++..+.. +... -.+++++++.+.+
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~------~~~~--~~~~~~~l~~i~~ 239 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE------GFYP--GVVDDEVLDLIAD 239 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh------hccc--CCCCHhHHHHHHH
Confidence 88888888754 3556666676 36899999999999999988743 1111 2367777766643
No 181
>PRK05642 DNA replication initiation factor; Validated
Probab=98.90 E-value=9.7e-09 Score=105.26 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=90.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhc
Q 005548 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLG 584 (691)
Q Consensus 505 ~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~ 584 (691)
.++.|+||+|+|||+|+++++..+......+.+-...+ +.. .. . ...... ....+++||+++...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~---~~~-------~~-~---~~~~~~-~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE---LLD-------RG-P---ELLDNL-EQYELVCLDDLDVIA 110 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH---HHh-------hh-H---HHHHhh-hhCCEEEEechhhhc
Confidence 67899999999999999999987643222222211111 110 00 1 111111 223599999998774
Q ss_pred ccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCC-C---CCCChhhcCeE---EEEEEcCCCHHHHHHH
Q 005548 585 RGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV-V---ENIPNPLLDRM---EVIAIAGYITDEKMHI 657 (691)
Q Consensus 585 ~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~-~---~~l~~aLldR~---~iI~~~~~~~~e~~~I 657 (691)
.. ......|+..++. +. + ++..+|+|++. + ....+.+.+|+ .++.+.+++.+++..+
T Consensus 111 ~~--~~~~~~Lf~l~n~---------~~----~-~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 111 GK--ADWEEALFHLFNR---------LR----D-SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred CC--hHHHHHHHHHHHH---------HH----h-cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 32 1224456666543 10 1 23445666664 3 22357899999 6789999999999999
Q ss_pred HHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 658 ARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 658 ~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
++...... .+.++++++++|+++
T Consensus 175 l~~ka~~~----------~~~l~~ev~~~L~~~ 197 (234)
T PRK05642 175 LQLRASRR----------GLHLTDEVGHFILTR 197 (234)
T ss_pred HHHHHHHc----------CCCCCHHHHHHHHHh
Confidence 98654321 267899999999874
No 182
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.90 E-value=3e-09 Score=107.53 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=44.0
Q ss_pred Hhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch
Q 005548 494 AVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD 542 (691)
Q Consensus 494 ~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~ 542 (691)
++.+++ .+++|.+++|+||||+||||++|+|.+.+.+..|.+.++|...
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~P 88 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDP 88 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCc
Confidence 455666 7899999999999999999999999999999999999988753
No 183
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.89 E-value=5.3e-09 Score=118.81 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=95.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhcC--CeEEEEeCccchh-hhhhcccCcccccccchHHHHHHHhcccCCEEEehhhh
Q 005548 505 KIICLSGPPGVGKTSIGRSIARALNR--KFFRFSVGGLADV-AEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEID 581 (691)
Q Consensus 505 ~~vlL~GPpGtGKTtLakaLA~~l~~--~~~~i~~~~~~~~-~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEid 581 (691)
.+++|+|++|+|||+|+++|+..+.. +...+.+-...+. .++.. .........+........+++||+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~-------al~~~~~~~f~~~y~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFIN-------SIRDGKGDSFRRRYREMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH-------HHHhccHHHHHHHhhcCCEEEEehhc
Confidence 45899999999999999999998743 1222222221221 11111 11111111222223334599999999
Q ss_pred hhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC----CCCChhhcCeEE---EEEEcCCCHHHH
Q 005548 582 KLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV----ENIPNPLLDRME---VIAIAGYITDEK 654 (691)
Q Consensus 582 kl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~----~~l~~aLldR~~---iI~~~~~~~~e~ 654 (691)
.+.... .....|+..++... + .+..+|+|+|.. ..+++.|.+||. ++.+..++.+.+
T Consensus 388 ~l~gke--~tqeeLF~l~N~l~-------------e-~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 388 FLEDKE--STQEEFFHTFNTLH-------------N-ANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred cccCCH--HHHHHHHHHHHHHH-------------h-cCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 875321 12345555554311 1 233455677764 346778999994 579999999999
Q ss_pred HHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 655 MHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 655 ~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
.+|+++.+... .+.++++++++|+.+
T Consensus 452 ~aIL~kka~~r----------~l~l~~eVi~yLa~r 477 (617)
T PRK14086 452 IAILRKKAVQE----------QLNAPPEVLEFIASR 477 (617)
T ss_pred HHHHHHHHHhc----------CCCCCHHHHHHHHHh
Confidence 99999877642 367899999999865
No 184
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.89 E-value=1.9e-09 Score=104.16 Aligned_cols=143 Identities=24% Similarity=0.351 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEE-EeCccc-----------hhhhhhc
Q 005548 481 GLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRF-SVGGLA-----------DVAEIKG 548 (691)
Q Consensus 481 Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i-~~~~~~-----------~~~~l~g 548 (691)
|++.+.+.+.+.+.-.+ -++.++|+||+|+||+++|+++|+.+......- .++... |...+..
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 77888888888887543 346799999999999999999999884332210 111110 1111100
Q ss_pred ccC-cccccccchHHHHHHHhc---c--cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceE
Q 005548 549 HRR-TYIGAMPGKMVQCLKNVG---T--ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVL 622 (691)
Q Consensus 549 ~~~-~~vG~~~~~i~~~l~~~~---~--~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi 622 (691)
... ..++ -..+........ . ...|++||++|++.. ..+++||..|+. ...++.
T Consensus 76 ~~~~~~i~--i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~----~a~NaLLK~LEe---------------pp~~~~ 134 (162)
T PF13177_consen 76 DKKKKSIK--IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE----EAQNALLKTLEE---------------PPENTY 134 (162)
T ss_dssp TTSSSSBS--HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H----HHHHHHHHHHHS---------------TTTTEE
T ss_pred ccccchhh--HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH----HHHHHHHHHhcC---------------CCCCEE
Confidence 000 0111 122222222221 1 223999999999964 567888888764 347899
Q ss_pred EEEEeCCCCCCChhhcCeEEEEEEcCC
Q 005548 623 FVCTANVVENIPNPLLDRMEVIAIAGY 649 (691)
Q Consensus 623 ~I~TsN~~~~l~~aLldR~~iI~~~~~ 649 (691)
||++++..+.+.+.+.+|+..+.|.++
T Consensus 135 fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEEEECChHHChHHHHhhceEEecCCC
Confidence 999999999999999999999998865
No 185
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.89 E-value=2.4e-08 Score=92.69 Aligned_cols=143 Identities=28% Similarity=0.430 Sum_probs=79.2
Q ss_pred chHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---cCCeEEEEeCccchhhhhhcccCcccccc
Q 005548 481 GLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARAL---NRKFFRFSVGGLADVAEIKGHRRTYIGAM 557 (691)
Q Consensus 481 Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l---~~~~~~i~~~~~~~~~~l~g~~~~~vG~~ 557 (691)
|.+.+...+...+.. ..+.+++++||||+|||++++.+++.+ +.+...+.+........... ..+..
T Consensus 2 ~~~~~~~~i~~~~~~------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~ 71 (151)
T cd00009 2 GQEEAIEALREALEL------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAE----LFGHF 71 (151)
T ss_pred chHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHH----Hhhhh
Confidence 344555555555432 246789999999999999999999998 55666665543322111100 00000
Q ss_pred cchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC--CCCh
Q 005548 558 PGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE--NIPN 635 (691)
Q Consensus 558 ~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~--~l~~ 635 (691)
.... ...........++++||++.+.. .....+++.+.. .........++.+|+++|... .+++
T Consensus 72 ~~~~-~~~~~~~~~~~~lilDe~~~~~~----~~~~~~~~~i~~---------~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 72 LVRL-LFELAEKAKPGVLFIDEIDSLSR----GAQNALLRVLET---------LNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hHhH-HHHhhccCCCeEEEEeChhhhhH----HHHHHHHHHHHh---------cCceeccCCCeEEEEecCccccCCcCh
Confidence 0000 11111223445999999988732 112233333321 100000125788888998876 6778
Q ss_pred hhcCeEE-EEEEc
Q 005548 636 PLLDRME-VIAIA 647 (691)
Q Consensus 636 aLldR~~-iI~~~ 647 (691)
.+.+|+. .+.++
T Consensus 138 ~~~~r~~~~i~~~ 150 (151)
T cd00009 138 ALYDRLDIRIVIP 150 (151)
T ss_pred hHHhhhccEeecC
Confidence 8899994 45543
No 186
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.88 E-value=1.9e-08 Score=102.10 Aligned_cols=159 Identities=14% Similarity=0.203 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccchhhhhhcccCcccccc
Q 005548 481 GLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLADVAEIKGHRRTYIGAM 557 (691)
Q Consensus 481 Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vG~~ 557 (691)
+.+.+.+.+..++. ...+.+++|+||+|||||+++++++..+. .+...+++..+...
T Consensus 21 ~~~~~~~~l~~~~~------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~-------------- 80 (226)
T TIGR03420 21 GNAELLAALRQLAA------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA-------------- 80 (226)
T ss_pred CcHHHHHHHHHHHh------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh--------------
Confidence 34556666666543 23567899999999999999999998875 33444444332110
Q ss_pred cchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC-CCC---
Q 005548 558 PGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV-ENI--- 633 (691)
Q Consensus 558 ~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~-~~l--- 633 (691)
....+.. .....+++|||++.+.... +....|+..++. .. + .+..+|+|++.. ..+
T Consensus 81 ---~~~~~~~-~~~~~lLvIDdi~~l~~~~--~~~~~L~~~l~~---------~~----~-~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 81 ---DPEVLEG-LEQADLVCLDDVEAIAGQP--EWQEALFHLYNR---------VR----E-AGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred ---HHHHHhh-cccCCEEEEeChhhhcCCh--HHHHHHHHHHHH---------HH----H-cCCeEEEECCCChHHCCcc
Confidence 0011111 1233599999999885321 113445544432 11 1 123566677643 222
Q ss_pred ChhhcCeEE---EEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 634 PNPLLDRME---VIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 634 ~~aLldR~~---iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
.+.+.+|+. .+.+++++.++...+++.++.+. .+.++++++..|.+
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~----------~~~~~~~~l~~L~~ 189 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARR----------GLQLPDEVADYLLR 189 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc----------CCCCCHHHHHHHHH
Confidence 266777873 68999999999999988765432 25688888888765
No 187
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.88 E-value=5.2e-09 Score=116.66 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=93.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhcC---CeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhh
Q 005548 505 KIICLSGPPGVGKTSIGRSIARALNR---KFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEID 581 (691)
Q Consensus 505 ~~vlL~GPpGtGKTtLakaLA~~l~~---~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEid 581 (691)
.+++|+||+|+|||+|++++++.+.. ....++...+. ..+....+ .+.. ..+.......++++|||++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~--~~~~~~l~------~~~~-~~f~~~~~~~dvLiIDDiq 212 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT--EHLVSAIR------SGEM-QRFRQFYRNVDALFIEDIE 212 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH--HHHHHHHh------cchH-HHHHHHcccCCEEEEcchh
Confidence 56999999999999999999998743 33333322111 11111000 0111 2233333445699999998
Q ss_pred hhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC----CCCChhhcCeE---EEEEEcCCCHHHH
Q 005548 582 KLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV----ENIPNPLLDRM---EVIAIAGYITDEK 654 (691)
Q Consensus 582 kl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~----~~l~~aLldR~---~iI~~~~~~~~e~ 654 (691)
.+.... .....|+..++. +. + .+..+|+|+|.. ..+++.+.+|| .++.+.+|+.+++
T Consensus 213 ~l~~k~--~~qeelf~l~N~---------l~----~-~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r 276 (445)
T PRK12422 213 VFSGKG--ATQEEFFHTFNS---------LH----T-EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGL 276 (445)
T ss_pred hhcCCh--hhHHHHHHHHHH---------HH----H-CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHH
Confidence 875321 123444444432 11 1 233566666653 34668899999 4689999999999
Q ss_pred HHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 655 MHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 655 ~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
..|+++.+... .+.++++++++|+.+
T Consensus 277 ~~iL~~k~~~~----------~~~l~~evl~~la~~ 302 (445)
T PRK12422 277 RSFLERKAEAL----------SIRIEETALDFLIEA 302 (445)
T ss_pred HHHHHHHHHHc----------CCCCCHHHHHHHHHh
Confidence 99998877642 266899999998763
No 188
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.88 E-value=3.8e-09 Score=112.45 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=84.8
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHH--------HHHH
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMV--------QCLK 566 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~--------~~l~ 566 (691)
.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.. ........+..+|+.++... ..+.
T Consensus 19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~-~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~ 97 (301)
T TIGR03522 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGED-VLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQ 97 (301)
T ss_pred EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-cccChHHHHhceEEecCCCCCCCCCcHHHHHH
Confidence 3344 578999999999999999999999999999999999988742 21111111233455544311 1111
Q ss_pred HhcccCC---------E-EE-----ehh-hhhhcccCCCC------HHHHHH------------hhcCHHHHHHHHHhhc
Q 005548 567 NVGTANP---------L-VL-----IDE-IDKLGRGHAGD------PASALL------------ELLDPEQNANFLDHYL 612 (691)
Q Consensus 567 ~~~~~~~---------V-ll-----lDE-idkl~~~~~~~------~~~~LL------------~~LD~~~~~~~~d~~~ 612 (691)
....... + -+ +++ .++.....+++ .+.+|+ ..||+.....+.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~ 177 (301)
T TIGR03522 98 FIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIK 177 (301)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 0000000 0 00 000 11111222222 122222 4789888888888877
Q ss_pred cccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 613 DVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 613 ~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.+. . +..+|++||..+.+ +.++||+.++
T Consensus 178 ~~~-~--~~tiii~sH~l~~~-~~~~d~i~~l 205 (301)
T TIGR03522 178 NIG-K--DKTIILSTHIMQEV-EAICDRVIII 205 (301)
T ss_pred Hhc-C--CCEEEEEcCCHHHH-HHhCCEEEEE
Confidence 664 2 46778888988877 6789998765
No 189
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.88 E-value=5e-09 Score=102.24 Aligned_cols=126 Identities=19% Similarity=0.292 Sum_probs=78.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh-cccCcccccccchH-----------------
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK-GHRRTYIGAMPGKM----------------- 561 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~-g~~~~~vG~~~~~i----------------- 561 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|.+.+.|.. ..... ...+..+++.++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~-~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGAD-ISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEE-cccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHH
Confidence 567999999999999999999999999999889999887742 11100 00012233333221
Q ss_pred --HHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcC
Q 005548 562 --VQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLD 639 (691)
Q Consensus 562 --~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLld 639 (691)
..........++++++||... .||+.....+.+.+..+. . .+..+|++||..+.+ . .+|
T Consensus 103 qrv~la~al~~~p~~lllDEPt~---------------~LD~~~~~~l~~~l~~~~-~-~~~tii~~sh~~~~~-~-~~d 163 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNS---------------HLDVEGERALNQAIAALK-A-AGATRIVIAHRPETL-A-SAD 163 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc---------------ccCHHHHHHHHHHHHHHH-h-CCCEEEEEeCCHHHH-H-hCC
Confidence 111122223445999999732 356655555555555443 2 355667777777665 3 688
Q ss_pred eEEEEE
Q 005548 640 RMEVIA 645 (691)
Q Consensus 640 R~~iI~ 645 (691)
|+.++.
T Consensus 164 ~v~~l~ 169 (173)
T cd03246 164 RILVLE 169 (173)
T ss_pred EEEEEE
Confidence 886654
No 190
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=3.9e-09 Score=110.54 Aligned_cols=57 Identities=19% Similarity=0.398 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 484 DVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 484 ~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
++.+.+.....+.+++ .+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~ 86 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ 86 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 4444444444455555 67899999999999999999999999999988999988774
No 191
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=8.1e-09 Score=100.80 Aligned_cols=127 Identities=23% Similarity=0.340 Sum_probs=79.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchH------------------
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKM------------------ 561 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i------------------ 561 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|++.+.|.. ........+..+++.++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~-~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKD-IKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-cccchHhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 567999999999999999999999999998889999887742 1111001112234333321
Q ss_pred --HHHHHHh-cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhc
Q 005548 562 --VQCLKNV-GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLL 638 (691)
Q Consensus 562 --~~~l~~~-~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLl 638 (691)
.-.+..+ ...++++++||... .||......+.+.+..+.. .+..+|++||..+.+ ..++
T Consensus 101 ~qrv~laral~~~p~illlDEPt~---------------~LD~~~~~~l~~~l~~~~~--~g~tiii~th~~~~~-~~~~ 162 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTS---------------GLDPESRREFWELLRELKK--EGKTILLSSHILEEA-ERLC 162 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcc---------------CCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHH-HHhC
Confidence 0111222 23445999999743 3566655666665555432 245666677776655 5677
Q ss_pred CeEEEEE
Q 005548 639 DRMEVIA 645 (691)
Q Consensus 639 dR~~iI~ 645 (691)
||+.++.
T Consensus 163 d~i~~l~ 169 (173)
T cd03230 163 DRVAILN 169 (173)
T ss_pred CEEEEEe
Confidence 8886664
No 192
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.84 E-value=4.2e-08 Score=113.25 Aligned_cols=185 Identities=18% Similarity=0.227 Sum_probs=111.7
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc----------CCeEEEEeCccchhh--
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN----------RKFFRFSVGGLADVA-- 544 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~----------~~~~~i~~~~~~~~~-- 544 (691)
+.+.|-++-.+.+..++.-. +.+..++..+.++|+||||||++++.+.+.+. ..+..|+|..+....
T Consensus 755 D~LPhREeEIeeLasfL~pa-IkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESG-IKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHH-HhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 46667777777777666422 22223344466999999999999999987762 334566664433221
Q ss_pred ------hhhcccCccccccc-chHHHHHHHh---cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 545 ------EIKGHRRTYIGAMP-GKMVQCLKNV---GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 545 ------~l~g~~~~~vG~~~-~~i~~~l~~~---~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
.+.+.... -|... ..+...+... .....||+|||||.+... ....|+..++- ...
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK----~QDVLYnLFR~---------~~~- 898 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK----TQKVLFTLFDW---------PTK- 898 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc----HHHHHHHHHHH---------hhc-
Confidence 11121111 11111 1112222222 111238999999999742 23445554432 100
Q ss_pred cccCCceEEEEEeCCCC---CCChhhcCeEEE--EEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 615 PIDLSKVLFVCTANVVE---NIPNPLLDRMEV--IAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~~---~l~~aLldR~~i--I~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..+.++||+++|..+ .+++.+.+|+.. |.|.+|+.+++..|++..+... ...++++++..+++
T Consensus 899 --s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----------~gVLdDdAIELIAr 966 (1164)
T PTZ00112 899 --INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----------KEIIDHTAIQLCAR 966 (1164)
T ss_pred --cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----------CCCCCHHHHHHHHH
Confidence 135788999999643 455677788854 8999999999999999887641 12488999988765
No 193
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=9.8e-09 Score=102.85 Aligned_cols=133 Identities=15% Similarity=0.185 Sum_probs=79.1
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccchhhhhhcccCcccccccchH--------HH
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLADVAEIKGHRRTYIGAMPGKM--------VQ 563 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i--------~~ 563 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+. +..|++.+.|.. ........+..+++.++.. ..
T Consensus 24 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~-~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 102 (202)
T cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP-YKEFAEKYPGEIIYVSEEDVHFPTLTVRE 102 (202)
T ss_pred eeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE-CccchhhhcceEEEEecccccCCCCcHHH
Confidence 3344 578999999999999999999999999987 778888887742 1111101122344443321 00
Q ss_pred H-------------------------HHHh-cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhcccccc
Q 005548 564 C-------------------------LKNV-GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPID 617 (691)
Q Consensus 564 ~-------------------------l~~~-~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~ 617 (691)
. +..+ ...++++++||.. ..||+.....+.+.+..+..+
T Consensus 103 ~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt---------------~~LD~~~~~~~~~~l~~~~~~ 167 (202)
T cd03233 103 TLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNST---------------RGLDSSTALEILKCIRTMADV 167 (202)
T ss_pred HHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC---------------ccCCHHHHHHHHHHHHHHHHh
Confidence 0 0001 1122366666642 346776666666666554322
Q ss_pred CCceEEEEEeCCCCCCChhhcCeEEEEE
Q 005548 618 LSKVLFVCTANVVENIPNPLLDRMEVIA 645 (691)
Q Consensus 618 ~~~vi~I~TsN~~~~l~~aLldR~~iI~ 645 (691)
.+.+++|+++|..+.+ ..++||+.++.
T Consensus 168 ~~~t~ii~~~h~~~~~-~~~~d~i~~l~ 194 (202)
T cd03233 168 LKTTTFVSLYQASDEI-YDLFDKVLVLY 194 (202)
T ss_pred CCCEEEEEEcCCHHHH-HHhCCeEEEEE
Confidence 2345666677765555 56788886653
No 194
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=6e-09 Score=113.29 Aligned_cols=41 Identities=29% Similarity=0.484 Sum_probs=38.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||||||||+++||+...+..|+|.+.|.
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~ 66 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGR 66 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCE
Confidence 56799999999999999999999999999999999999874
No 195
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.83 E-value=3e-09 Score=105.73 Aligned_cols=168 Identities=20% Similarity=0.304 Sum_probs=105.7
Q ss_pred HHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcc----cCcccccccchHHHHHHH
Q 005548 493 IAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGH----RRTYIGAMPGKMVQCLKN 567 (691)
Q Consensus 493 l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~----~~~~vG~~~~~i~~~l~~ 567 (691)
.++..++ .+++|+.+.++||+|+|||||+|+|++..+++.|+|.+.+.. ...+.+. -+..+|+.+|.+......
T Consensus 18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~-i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~ 96 (258)
T COG3638 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQ-ITKLKGKELRKLRRDIGMIFQQFNLVPRL 96 (258)
T ss_pred eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccc-hhccchHHHHHHHHhceeEeccCCccccc
Confidence 3344455 688999999999999999999999999999999999988853 2222221 134577777763211111
Q ss_pred hcccC---------C-----------------------EEEehhhhhhcccCCCC------HHHHHH------------h
Q 005548 568 VGTAN---------P-----------------------LVLIDEIDKLGRGHAGD------PASALL------------E 597 (691)
Q Consensus 568 ~~~~~---------~-----------------------VlllDEidkl~~~~~~~------~~~~LL------------~ 597 (691)
....| + |=++|-+..-....+++ .+.+|. .
T Consensus 97 sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPva 176 (258)
T COG3638 97 SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVA 176 (258)
T ss_pred HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCccc
Confidence 10000 0 01111111111112222 344554 4
Q ss_pred hcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEE-----EEEcCCCHHHHHHHHHHHHh
Q 005548 598 LLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEV-----IAIAGYITDEKMHIARDYLE 663 (691)
Q Consensus 598 ~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~i-----I~~~~~~~~e~~~I~~~~l~ 663 (691)
.|||.....+++.+.++... .+..+|++.|..+.. ..+++|+.- |.|.+++.+-..+.+.....
T Consensus 177 sLDp~~a~~Vm~~l~~in~~-~g~Tvi~nLH~vdlA-~~Y~~Riigl~~G~ivfDg~~~el~~~~~~~iYg 245 (258)
T COG3638 177 SLDPESAKKVMDILKDINQE-DGITVIVNLHQVDLA-KKYADRIIGLKAGRIVFDGPASELTDEALDEIYG 245 (258)
T ss_pred ccChhhHHHHHHHHHHHHHH-cCCEEEEEechHHHH-HHHHhhheEecCCcEEEeCChhhhhHHHHHHHhc
Confidence 78999999999999887754 677888888887765 678888843 46788776655555554443
No 196
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.83 E-value=5.8e-09 Score=112.62 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=88.1
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc----ccCcccccccchHHHHHHHhc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG----HRRTYIGAMPGKMVQCLKNVG 569 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g----~~~~~vG~~~~~i~~~l~~~~ 569 (691)
+.+++ .+.+|++++|+||||+|||||+++|++...++.|+|.+.|. +...+.. ..+..+|++++........+.
T Consensus 21 L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~-~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv 99 (343)
T TIGR02314 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQ-DLTTLSNSELTKARRQIGMIFQHFNLLSSRTV 99 (343)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE-ECCcCCHHHHHHHhcCEEEEECCccccccCcH
Confidence 34444 57899999999999999999999999999999999999874 2222111 113456776665211000000
Q ss_pred ccC--------C---------E-EEeh------hhhhhcccCCCC------HHHHHH------------hhcCHHHHHHH
Q 005548 570 TAN--------P---------L-VLID------EIDKLGRGHAGD------PASALL------------ELLDPEQNANF 607 (691)
Q Consensus 570 ~~~--------~---------V-lllD------Eidkl~~~~~~~------~~~~LL------------~~LD~~~~~~~ 607 (691)
..| . + -+++ -.++.....+++ .+.+|. ..||+.....+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i 179 (343)
T TIGR02314 100 FGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSI 179 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 000 0 0 0000 011111222222 233333 47899888888
Q ss_pred HHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 608 LDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 608 ~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.+.+..+..+ .+..+|++||..+.+ ..++||+.++
T Consensus 180 ~~lL~~l~~~-~g~tiiliTH~~~~v-~~~~d~v~vl 214 (343)
T TIGR02314 180 LELLKEINRR-LGLTILLITHEMDVV-KRICDCVAVI 214 (343)
T ss_pred HHHHHHHHHh-cCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 8887766432 256677788887776 5788999766
No 197
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=8.8e-09 Score=101.02 Aligned_cols=127 Identities=22% Similarity=0.314 Sum_probs=77.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh---cccCcccccccch----------------
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK---GHRRTYIGAMPGK---------------- 560 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~---g~~~~~vG~~~~~---------------- 560 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|++.+.|.. ..... ...+..+++.++.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED-LTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-ccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 567999999999999999999999999998888999887742 11110 0001122222221
Q ss_pred ----H---HHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCC
Q 005548 561 ----M---VQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENI 633 (691)
Q Consensus 561 ----i---~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l 633 (691)
. ..........++++++||... .||......+.+.+..+... .+..+|++||..+.+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~---------------~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~ 164 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTS---------------ALDPITRREVRALLKSLQAQ-LGITVVLVTHDLDEA 164 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcc---------------cCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH
Confidence 0 111122223445999999732 35665555555555443311 145666777776666
Q ss_pred ChhhcCeEEEE
Q 005548 634 PNPLLDRMEVI 644 (691)
Q Consensus 634 ~~aLldR~~iI 644 (691)
..++|++.++
T Consensus 165 -~~~~d~i~~l 174 (178)
T cd03229 165 -ARLADRVVVL 174 (178)
T ss_pred -HHhcCEEEEE
Confidence 4567887655
No 198
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.82 E-value=1.1e-08 Score=100.41 Aligned_cols=129 Identities=19% Similarity=0.280 Sum_probs=77.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchh----hhhh-------------c---ccCcccccccc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADV----AEIK-------------G---HRRTYIGAMPG 559 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~----~~l~-------------g---~~~~~vG~~~~ 559 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.+..-. ..+. + .....+....+
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 56799999999999999999999999999888999988764210 0000 0 00111111111
Q ss_pred hHH---HHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChh
Q 005548 560 KMV---QCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNP 636 (691)
Q Consensus 560 ~i~---~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~a 636 (691)
... .........++++++||... .||......+.+.+..+..+ .+..+|++||..+.+ ..
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~---------------~LD~~~~~~~~~~l~~~~~~-~~~tiii~sh~~~~~-~~ 163 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTS---------------HLDIAHQIELLELLRRLARE-RGKTVVMVLHDLNLA-AR 163 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcc---------------CCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-HH
Confidence 111 11122233445999999732 35555555555555443211 145667788887766 46
Q ss_pred hcCeEEEEE
Q 005548 637 LLDRMEVIA 645 (691)
Q Consensus 637 LldR~~iI~ 645 (691)
++||+.++.
T Consensus 164 ~~d~~~~l~ 172 (180)
T cd03214 164 YADRVILLK 172 (180)
T ss_pred hCCEEEEEE
Confidence 789887664
No 199
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.82 E-value=3.1e-09 Score=115.41 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=40.7
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||||||||+++|++.+.+..|+|.+.|.
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~ 55 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGE 55 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCE
Confidence 34444 67899999999999999999999999999999999998874
No 200
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.82 E-value=6.9e-09 Score=110.59 Aligned_cols=145 Identities=24% Similarity=0.277 Sum_probs=82.9
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchH--------HHHHH
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKM--------VQCLK 566 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i--------~~~l~ 566 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.. ........+..+|+.++.. ...+.
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~-~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 99 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEP-VPSRARLARVAIGVVPQFDNLDPEFTVRENLL 99 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-CcccHHHHhhcEEEEeccccCCcCCcHHHHHH
Confidence 3444 578999999999999999999999999999899999987742 1110001123345544431 11111
Q ss_pred HhcccCCE----------EEehh------hhhhcccCCCC------HHHHHH------------hhcCHHHHHHHHHhhc
Q 005548 567 NVGTANPL----------VLIDE------IDKLGRGHAGD------PASALL------------ELLDPEQNANFLDHYL 612 (691)
Q Consensus 567 ~~~~~~~V----------lllDE------idkl~~~~~~~------~~~~LL------------~~LD~~~~~~~~d~~~ 612 (691)
.......+ -+++. .++.....+++ .+.+|+ ..||+.....+.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 179 (303)
T TIGR01288 100 VFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 179 (303)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 00000000 00000 01111122222 122222 4788888888888777
Q ss_pred cccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 613 DVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 613 ~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.+. . .+..+|++||..+.+ ..++||+.++
T Consensus 180 ~~~-~-~g~til~~sH~~~~~-~~~~d~i~~l 208 (303)
T TIGR01288 180 SLL-A-RGKTILLTTHFMEEA-ERLCDRLCVL 208 (303)
T ss_pred HHH-h-CCCEEEEECCCHHHH-HHhCCEEEEE
Confidence 654 2 356777788887766 5678988655
No 201
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.82 E-value=1.2e-08 Score=119.05 Aligned_cols=164 Identities=20% Similarity=0.255 Sum_probs=95.5
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc---------------------------
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN--------------------------- 529 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~--------------------------- 529 (691)
..|+|+++++..+.-...-. ...+++|.||+|||||+++++|+..+.
T Consensus 4 ~~ivGq~~~~~al~~~av~~------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~ 77 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDP------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRK 77 (633)
T ss_pred chhcChHHHHHHHHHHhhCC------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhc
Confidence 47899999987775554421 224699999999999999999999983
Q ss_pred --------CCeEEEEeCccchhhhhhccc-------CcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHH
Q 005548 530 --------RKFFRFSVGGLADVAEIKGHR-------RTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASA 594 (691)
Q Consensus 530 --------~~~~~i~~~~~~~~~~l~g~~-------~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~ 594 (691)
.++..+.++.. ...+.|.. .+.....+| . .....++++||||++++.. ..++.
T Consensus 78 ~~~~~~~~~pfv~~p~~~t--~~~l~G~~d~~~~l~~g~~~~~~G----~--L~~A~~GiL~lDEi~~l~~----~~q~~ 145 (633)
T TIGR02442 78 YRPSEQRPVPFVNLPLGAT--EDRVVGSLDIERALREGEKAFQPG----L--LAEAHRGILYIDEVNLLDD----HLVDV 145 (633)
T ss_pred ccccccCCCCeeeCCCCCc--HHHcCCcccHHHHhhcCCeeecCc----c--eeecCCCeEEeChhhhCCH----HHHHH
Confidence 12222222110 11111110 000000011 0 0122456999999999964 45678
Q ss_pred HHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC-CCCChhhcCeEEE-EEEcCCC-HHHHHHHHHH
Q 005548 595 LLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV-ENIPNPLLDRMEV-IAIAGYI-TDEKMHIARD 660 (691)
Q Consensus 595 LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~-~~l~~aLldR~~i-I~~~~~~-~~e~~~I~~~ 660 (691)
|++.|+........++.. .. ...++.+|+|+|.. ..++++|+|||.+ +.+..+. .+++.++++.
T Consensus 146 Ll~~le~g~~~v~r~g~~-~~-~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 146 LLDAAAMGVNRVEREGLS-VS-HPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred HHHHHhcCCEEEEECCce-ee-ecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 888776421100000110 01 11468899999975 3588899999975 5655544 4666777765
No 202
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=1.1e-08 Score=103.20 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 62 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGR 62 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 56799999999999999999999999999888999988764
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.81 E-value=5.6e-09 Score=114.05 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 483 NDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 483 ~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
+++.+.+.....+.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG 85 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKD 85 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC
Confidence 44555555555566666 7889999999999999999999999999999999999987
No 204
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.81 E-value=6.9e-09 Score=105.84 Aligned_cols=129 Identities=21% Similarity=0.265 Sum_probs=85.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhh-hhhcccCcccccccchHHHHHHHhcc--------
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVA-EIKGHRRTYIGAMPGKMVQCLKNVGT-------- 570 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~-~l~g~~~~~vG~~~~~i~~~l~~~~~-------- 570 (691)
.+.+|+.++|+||||+|||||++.+++.+.+..+.|.+.|..... ......++++|+.+|.....+.....
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~ 105 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL 105 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhch
Confidence 678999999999999999999999999999999999887753210 11122256788887764221111110
Q ss_pred -------------------------------------------------cCC-EEEehhhhhhcccCCCCHHHHHHhhcC
Q 005548 571 -------------------------------------------------ANP-LVLIDEIDKLGRGHAGDPASALLELLD 600 (691)
Q Consensus 571 -------------------------------------------------~~~-VlllDEidkl~~~~~~~~~~~LL~~LD 600 (691)
.+| ++++||.- ..||
T Consensus 106 ~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt---------------a~LD 170 (235)
T COG1122 106 ENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT---------------AGLD 170 (235)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCC---------------CCCC
Confidence 111 33333321 4688
Q ss_pred HHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEE
Q 005548 601 PEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIA 645 (691)
Q Consensus 601 ~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~ 645 (691)
+.....+.+.+..+..+ .+..+|+.||+.+.+ ..++||+.++.
T Consensus 171 ~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~-~~~ad~v~vl~ 213 (235)
T COG1122 171 PKGRRELLELLKKLKEE-GGKTIIIVTHDLELV-LEYADRVVVLD 213 (235)
T ss_pred HHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHH-HhhCCEEEEEE
Confidence 88777777777776644 344566667777777 56789997764
No 205
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=9.3e-09 Score=105.38 Aligned_cols=41 Identities=27% Similarity=0.471 Sum_probs=38.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 62 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE 62 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 57899999999999999999999999999989999998774
No 206
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.81 E-value=1.1e-08 Score=100.28 Aligned_cols=125 Identities=20% Similarity=0.338 Sum_probs=78.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccch-------------------
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGK------------------- 560 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~------------------- 560 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|++.+.|.. ........+..++++++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~-~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP-VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEE-HHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 578999999999999999999999999999889999888742 211100011223333222
Q ss_pred HH--HHHHH-hcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhh
Q 005548 561 MV--QCLKN-VGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPL 637 (691)
Q Consensus 561 i~--~~l~~-~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aL 637 (691)
.. -.+.. ....++++++||... .||......+.+.+.... .+..+|++||..+.+. .
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~---------------~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~--~ 162 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTV---------------GLDPITERQLLSLIFEVL---KDKTLIWITHHLTGIE--H 162 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcc---------------cCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHH--h
Confidence 11 11122 223445999999733 356666566666655442 2456666777777663 4
Q ss_pred cCeEEEEE
Q 005548 638 LDRMEVIA 645 (691)
Q Consensus 638 ldR~~iI~ 645 (691)
++|+.++.
T Consensus 163 ~d~~~~l~ 170 (178)
T cd03247 163 MDKILFLE 170 (178)
T ss_pred CCEEEEEE
Confidence 78886653
No 207
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.81 E-value=9.4e-09 Score=104.19 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGY 64 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 57899999999999999999999999999989999988774
No 208
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=2.3e-09 Score=109.66 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=38.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 67 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGT 67 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 57899999999999999999999999999999999988774
No 209
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.81 E-value=1.2e-08 Score=103.21 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=37.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 66 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGT 66 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCE
Confidence 57799999999999999999999999999999999988774
No 210
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.81 E-value=5.3e-10 Score=114.98 Aligned_cols=147 Identities=24% Similarity=0.307 Sum_probs=98.4
Q ss_pred Hhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcc----cCcccccccchHHHHHHHh
Q 005548 494 AVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGH----RRTYIGAMPGKMVQCLKNV 568 (691)
Q Consensus 494 ~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~----~~~~vG~~~~~i~~~l~~~ 568 (691)
++.+++ .+++|.+++++|.+|+|||||+|+|-..-.++.|.|.+.|. +...+.+. .+..+|+.+|.+...-.++
T Consensus 21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~-di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT 99 (339)
T COG1135 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ-DLTALSEAELRQLRQKIGMIFQHFNLLSSRT 99 (339)
T ss_pred eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCE-ecccCChHHHHHHHhhccEEeccccccccch
Confidence 444555 78899999999999999999999999999999999999883 33333221 2567899988754332233
Q ss_pred cccCCEEEe-------------------------hhhhhhcccCCCC------HHHHHH------------hhcCHHHHH
Q 005548 569 GTANPLVLI-------------------------DEIDKLGRGHAGD------PASALL------------ELLDPEQNA 605 (691)
Q Consensus 569 ~~~~~Vlll-------------------------DEidkl~~~~~~~------~~~~LL------------~~LD~~~~~ 605 (691)
...| |.|- |-.++.+...+++ .+.+|- +.|||.+..
T Consensus 100 V~~N-vA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 100 VFEN-VAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred HHhh-hhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 2222 2221 1122222222222 233333 478999999
Q ss_pred HHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 606 NFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 606 ~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.+++.+.++...+ +..+++.||.++.+ ..+|||+.++
T Consensus 179 sIL~LL~~In~~l-glTIvlITHEm~Vv-k~ic~rVavm 215 (339)
T COG1135 179 SILELLKDINREL-GLTIVLITHEMEVV-KRICDRVAVL 215 (339)
T ss_pred HHHHHHHHHHHHc-CCEEEEEechHHHH-HHHhhhheEe
Confidence 9999888877554 56666677888877 7899999665
No 211
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.81 E-value=1.1e-08 Score=103.44 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=38.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 65 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQ 65 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 56799999999999999999999999999989999998874
No 212
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.80 E-value=8.2e-09 Score=101.05 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=49.2
Q ss_pred HHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC-----eEEEEeCccchhhhh--hcccCcccccccch
Q 005548 489 ILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRK-----FFRFSVGGLADVAEI--KGHRRTYIGAMPGK 560 (691)
Q Consensus 489 i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~-----~~~i~~~~~~~~~~l--~g~~~~~vG~~~~~ 560 (691)
|.+..++.+++ .++++.+.+|+||+||||||++|++-+....- .|+|.+.|..-...- .-..++.+|+++|+
T Consensus 17 Yg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred ECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccC
Confidence 33444555565 68899999999999999999999999876432 477777764321110 01125678888776
No 213
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2.4e-08 Score=107.12 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=89.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCCe--EEEEeCccc-----------hhhhhhccc-CcccccccchHHH---HHH
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRKF--FRFSVGGLA-----------DVAEIKGHR-RTYIGAMPGKMVQ---CLK 566 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~~--~~i~~~~~~-----------~~~~l~g~~-~~~vG~~~~~i~~---~l~ 566 (691)
++.++|+||+|+|||++|+++|+.+.... ..-.|+... |...+.... .+.++ -..+.. .+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~--id~iR~l~~~~~ 99 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIK--VDQVRELVSFVV 99 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCC--HHHHHHHHHHHh
Confidence 45699999999999999999999985421 000111100 111110000 00011 112222 222
Q ss_pred Hhc--ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 567 NVG--TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 567 ~~~--~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
... ....|++||++|++.. ..+++||..|+. ..++++||++|+.++.+.+.+++||..+
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~----~aaNaLLK~LEE---------------Pp~~~~fiL~t~~~~~ll~TI~SRc~~~ 160 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNR----NAANALLKSLEE---------------PSGDTVLLLISHQPSRLLPTIKSRCQQQ 160 (328)
T ss_pred hccccCCCeEEEECChhhCCH----HHHHHHHHHHhC---------------CCCCeEEEEEECChhhCcHHHHhhceee
Confidence 221 1234999999999964 567888888874 3468999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHH
Q 005548 645 AIAGYITDEKMHIARDY 661 (691)
Q Consensus 645 ~~~~~~~~e~~~I~~~~ 661 (691)
.|.+++.++....+...
T Consensus 161 ~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 161 ACPLPSNEESLQWLQQA 177 (328)
T ss_pred eCCCcCHHHHHHHHHHh
Confidence 99999998877666553
No 214
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=9.8e-09 Score=98.46 Aligned_cols=126 Identities=25% Similarity=0.319 Sum_probs=79.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhh-hcccCcccccccc------hHHHHHHHhcccC
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEI-KGHRRTYIGAMPG------KMVQCLKNVGTAN 572 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l-~g~~~~~vG~~~~------~i~~~l~~~~~~~ 572 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..+++.+.+... ... .......+++.++ +...........+
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~-~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI-AKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNP 99 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc-ccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999999887421 110 0001123343221 1112223333355
Q ss_pred CEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 573 PLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 573 ~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
+++++||... .||......+.+.+..... .+..++++||..+.+ +.++|++..+
T Consensus 100 ~i~ilDEp~~---------------~lD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~-~~~~d~i~~l 153 (157)
T cd00267 100 DLLLLDEPTS---------------GLDPASRERLLELLRELAE--EGRTVIIVTHDPELA-ELAADRVIVL 153 (157)
T ss_pred CEEEEeCCCc---------------CCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 6999999843 2555555555555544331 235677788887766 4566777554
No 215
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.80 E-value=1.3e-08 Score=102.10 Aligned_cols=139 Identities=20% Similarity=0.278 Sum_probs=82.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHH-HHHHhcccCCEEE--
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQ-CLKNVGTANPLVL-- 576 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~-~l~~~~~~~~Vll-- 576 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|.|.+.|.. ... ...+..+|+.++.... .+..+...+ +.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-~~~--~~~~~~i~~~~q~~~~~~~~~tv~e~-l~~~~ 97 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP-IKA--KERRKSIGYVMQDVDYQLFTDSVREE-LLLGL 97 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE-hhh--HHhhcceEEEecChhhhhhhccHHHH-Hhhhh
Confidence 567999999999999999999999999999999999887742 211 0112345666554311 111111111 000
Q ss_pred -------------ehh------hhhhcccCCCC------HHHHHH------------hhcCHHHHHHHHHhhccccccCC
Q 005548 577 -------------IDE------IDKLGRGHAGD------PASALL------------ELLDPEQNANFLDHYLDVPIDLS 619 (691)
Q Consensus 577 -------------lDE------idkl~~~~~~~------~~~~LL------------~~LD~~~~~~~~d~~~~~~~~~~ 619 (691)
++. .++.....+++ .+.+|. ..||+.....+.+.+..+. . .
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~ 175 (205)
T cd03226 98 KELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA-A-Q 175 (205)
T ss_pred hhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-H-C
Confidence 000 11111122222 122222 4788888888877776653 2 3
Q ss_pred ceEEEEEeCCCCCCChhhcCeEEEEE
Q 005548 620 KVLFVCTANVVENIPNPLLDRMEVIA 645 (691)
Q Consensus 620 ~vi~I~TsN~~~~l~~aLldR~~iI~ 645 (691)
+..+|++||..+.+ ..++||+.++.
T Consensus 176 ~~tii~~sH~~~~~-~~~~d~i~~l~ 200 (205)
T cd03226 176 GKAVIVITHDYEFL-AKVCDRVLLLA 200 (205)
T ss_pred CCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 55677777877666 56788886663
No 216
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.2e-08 Score=103.39 Aligned_cols=41 Identities=32% Similarity=0.461 Sum_probs=37.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 62 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGH 62 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 56789999999999999999999999999888999988774
No 217
>PRK06620 hypothetical protein; Validated
Probab=98.80 E-value=1.9e-08 Score=101.61 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=82.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhc
Q 005548 505 KIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLG 584 (691)
Q Consensus 505 ~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~ 584 (691)
..+.|+||+|||||||+++++...+..+ +. .. . . . . ... ....++++||++...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~--~~-~---------~----~-~---~~~----~~~d~lliDdi~~~~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI--IK--DI-F---------F----N-E---EIL----EKYNAFIIEDIENWQ 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE--cc--hh-h---------h----c-h---hHH----hcCCEEEEeccccch
Confidence 5699999999999999999988765311 11 10 0 0 0 0 011 123599999998441
Q ss_pred ccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCC--CChhhcCeEE---EEEEcCCCHHHHHHHHH
Q 005548 585 RGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVEN--IPNPLLDRME---VIAIAGYITDEKMHIAR 659 (691)
Q Consensus 585 ~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~--l~~aLldR~~---iI~~~~~~~~e~~~I~~ 659 (691)
+ ..|+..++. +. +.++.++|.++..+.. + ++|.+|+. ++.+.+++.+++..+++
T Consensus 99 ----~---~~lf~l~N~---------~~----e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 99 ----E---PALLHIFNI---------IN----EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred ----H---HHHHHHHHH---------HH----hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 1 233333321 11 1234444443333332 6 78999997 78999999999998888
Q ss_pred HHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 660 DYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 660 ~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
+.+... .+.++++++++|+++
T Consensus 158 k~~~~~----------~l~l~~ev~~~L~~~ 178 (214)
T PRK06620 158 KHFSIS----------SVTISRQIIDFLLVN 178 (214)
T ss_pred HHHHHc----------CCCCCHHHHHHHHHH
Confidence 877641 367999999999864
No 218
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=6.7e-09 Score=114.19 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 483 NDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 483 ~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+++.+.+....++.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 32 ~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~ 90 (400)
T PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGV 90 (400)
T ss_pred HHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCE
Confidence 34444443333455555 68899999999999999999999999999999999998774
No 219
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.79 E-value=1.5e-08 Score=101.62 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=41.4
Q ss_pred HHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 493 IAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 493 l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.++.+++ .+.+|+.++|+|+||+|||||+|.||+.+.++.|.+.+.|-
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~ 89 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK 89 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce
Confidence 3444555 67899999999999999999999999999999999988763
No 220
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=6.3e-08 Score=111.47 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=48.4
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCe
Q 005548 469 IRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF 532 (691)
Q Consensus 469 ~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~ 532 (691)
.+.++...++++|+++..+.+..++.-.. .....++.++|+|||||||||+++++|+.++..+
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~-~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQV-LENAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcc-cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 34556666689999988888877765322 1345677899999999999999999999987654
No 221
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.79 E-value=2.5e-08 Score=107.31 Aligned_cols=175 Identities=16% Similarity=0.227 Sum_probs=108.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhcccCc-ccccccchHHHHHHHhcccCCEE
Q 005548 503 QGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHRRT-YIGAMPGKMVQCLKNVGTANPLV 575 (691)
Q Consensus 503 ~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~~~-~vG~~~~~i~~~l~~~~~~~~Vl 575 (691)
...+|+|.|++||||+++|++|..... .++..|+|..+.+ ...++|+.++ +.|...... ..+.. ..++++
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~-G~~~~--a~gGtL 97 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQ-GRFER--ADGGTL 97 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccC-Cchhh--CCCCEE
Confidence 457899999999999999999987764 5799999987654 2345555432 222221111 11222 245699
Q ss_pred EehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC-------CCCChhhcCeEEE--EEE
Q 005548 576 LIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV-------ENIPNPLLDRMEV--IAI 646 (691)
Q Consensus 576 llDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~-------~~l~~aLldR~~i--I~~ 646 (691)
|||||+.++. ..+..|+..|+........ .... ...++.+|++||.. ..+.+.|..|+.. |.+
T Consensus 98 ~Ldei~~L~~----~~Q~~Ll~~l~~~~~~~~g-~~~~---~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~l 169 (329)
T TIGR02974 98 FLDELATASL----LVQEKLLRVIEYGEFERVG-GSQT---LQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITL 169 (329)
T ss_pred EeCChHhCCH----HHHHHHHHHHHcCcEEecC-CCce---eccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCC
Confidence 9999999864 3456677666532111000 0001 12457888888753 2456778889854 566
Q ss_pred cCCC--HHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 647 AGYI--TDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 647 ~~~~--~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
+++. .++...+++.|+.+... ..+... ...++++++..|.++
T Consensus 170 PpLReR~eDI~~L~~~fl~~~~~-~~~~~~-~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 170 PPLRERQEDIMLLAEHFAIRMAR-ELGLPL-FPGFTPQAREQLLEY 213 (329)
T ss_pred CchhhhhhhHHHHHHHHHHHHHH-HhCCCC-CCCcCHHHHHHHHhC
Confidence 6666 35667788888776433 233321 146899999988765
No 222
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.79 E-value=9e-09 Score=112.03 Aligned_cols=41 Identities=29% Similarity=0.431 Sum_probs=37.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCe--EEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKF--FRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~--~~i~~~~~ 540 (691)
.+.+|+.++|+||||||||||+++||+...+.. |+|.+.|.
T Consensus 27 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~ 69 (362)
T TIGR03258 27 EIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR 69 (362)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCE
Confidence 567899999999999999999999999999888 99998874
No 223
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.79 E-value=1.1e-08 Score=100.65 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=81.9
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh--cccCcccccccch-----------
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK--GHRRTYIGAMPGK----------- 560 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~--g~~~~~vG~~~~~----------- 560 (691)
+..++ .+.+|+.++|+||||+|||||+++|++.+.+..|++.+.|.. ..... ...+..+++.++.
T Consensus 16 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~-~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 94 (182)
T cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKP-VTRRSPRDAIRAGIAYVPEDRKREGLVLDLS 94 (182)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-CCccCHHHHHhCCeEEecCCcccCcccCCCc
Confidence 33444 578999999999999999999999999999999999887742 11110 0001223333321
Q ss_pred HHH----------------HHHHhc-ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEE
Q 005548 561 MVQ----------------CLKNVG-TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLF 623 (691)
Q Consensus 561 i~~----------------~l~~~~-~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~ 623 (691)
+.. .+..+. ..++++++||... .||+.....+.+.+..+. . .+..+
T Consensus 95 ~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~---------------~LD~~~~~~l~~~l~~~~-~-~~~ti 157 (182)
T cd03215 95 VAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTR---------------GVDVGAKAEIYRLIRELA-D-AGKAV 157 (182)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCc---------------CCCHHHHHHHHHHHHHHH-H-CCCEE
Confidence 100 111122 2445999999732 366666666666555443 1 24567
Q ss_pred EEEeCCCCCCChhhcCeEEEEE
Q 005548 624 VCTANVVENIPNPLLDRMEVIA 645 (691)
Q Consensus 624 I~TsN~~~~l~~aLldR~~iI~ 645 (691)
|++||..+.+ ..++||+.++.
T Consensus 158 ii~sh~~~~~-~~~~d~v~~l~ 178 (182)
T cd03215 158 LLISSELDEL-LGLCDRILVMY 178 (182)
T ss_pred EEEeCCHHHH-HHhCCEEEEec
Confidence 7778877666 56788886653
No 224
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.78 E-value=2.4e-08 Score=108.62 Aligned_cols=196 Identities=17% Similarity=0.225 Sum_probs=130.8
Q ss_pred cccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhcccC
Q 005548 478 DHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHRR 551 (691)
Q Consensus 478 ~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~~ 551 (691)
.++|...+...+.+.+.+- -+...+|+|.|.+||||..+||+|..... .+++.++|..+.+ .++++||.+
T Consensus 224 ~iIG~S~am~~ll~~i~~V----A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeK 299 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVV----AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEK 299 (550)
T ss_pred cceecCHHHHHHHHHHHHH----hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccc
Confidence 6777777777776665431 13456899999999999999999999874 5799999988775 678999886
Q ss_pred c-ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC
Q 005548 552 T-YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV 630 (691)
Q Consensus 552 ~-~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~ 630 (691)
+ +.|..-++... |. ...++.+|+|||+.++.. .+..||.+|......++... ..++ =.+-+|++||+-
T Consensus 300 GAFTGA~~~r~Gr-FE--lAdGGTLFLDEIGelPL~----lQaKLLRvLQegEieRvG~~-r~ik---VDVRiIAATNRD 368 (550)
T COG3604 300 GAFTGAINTRRGR-FE--LADGGTLFLDEIGELPLA----LQAKLLRVLQEGEIERVGGD-RTIK---VDVRVIAATNRD 368 (550)
T ss_pred cccccchhccCcc-ee--ecCCCeEechhhccCCHH----HHHHHHHHHhhcceeecCCC-ceeE---EEEEEEeccchh
Confidence 5 44444333222 22 234669999999988753 35577777654332221111 1112 248899999963
Q ss_pred -------CCCChhhcCeEEEEEEcCCCHHH---HHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 631 -------ENIPNPLLDRMEVIAIAGYITDE---KMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 631 -------~~l~~aLldR~~iI~~~~~~~~e---~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
..+.+.|..|+.++.+.-|+..| -+-++-.|+.++.....|.. .+.++.++++.+.++
T Consensus 369 L~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~--~l~ls~~Al~~L~~y 436 (550)
T COG3604 369 LEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA--ILSLSAEALELLSSY 436 (550)
T ss_pred HHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc--ccccCHHHHHHHHcC
Confidence 34666778888876544444433 34556666666666666653 478999999988764
No 225
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.78 E-value=1.2e-08 Score=102.79 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.+.
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 63 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGK 63 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 56799999999999999999999999999888999988774
No 226
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.78 E-value=2.6e-08 Score=95.22 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=38.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA 541 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~ 541 (691)
.++.|++++++||+|+|||||...||++..+..|.|.+.|..
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d 62 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVD 62 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCee
Confidence 578999999999999999999999999999999999988754
No 227
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.78 E-value=1.5e-09 Score=108.55 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 483 NDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 483 ~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+++.+++....++.+++ .+.+|++++|+||||+||||+.+.|.+.+.++.|+|.+.|.
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~ 66 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR 66 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCc
Confidence 45555666666667776 78899999999999999999999999999999999998874
No 228
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=1.1e-08 Score=110.93 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=39.8
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~ 67 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQ 67 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 3444 57899999999999999999999999999999999998874
No 229
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.78 E-value=1.4e-08 Score=102.87 Aligned_cols=41 Identities=32% Similarity=0.426 Sum_probs=37.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 67 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGF 67 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCE
Confidence 56789999999999999999999999999888999988764
No 230
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.78 E-value=1.9e-08 Score=101.15 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=86.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch----hhhhhcccCcccccccchHHHHHHHhcccCCEE
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD----VAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLV 575 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~----~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~Vl 575 (691)
.+++|+.++++||+|||||||+..|++...++.+.+.+.|..- ..++...++..+|+++|........+...| |.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~EN-v~ 105 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLEN-VE 105 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHH-HH
Confidence 6789999999999999999999999999999999988887321 122333456788999887432111111111 00
Q ss_pred -------------------E-----eh-hhh-hhcccCCCC------HHHHHH------------hhcCHHHHHHHHHhh
Q 005548 576 -------------------L-----ID-EID-KLGRGHAGD------PASALL------------ELLDPEQNANFLDHY 611 (691)
Q Consensus 576 -------------------l-----lD-Eid-kl~~~~~~~------~~~~LL------------~~LD~~~~~~~~d~~ 611 (691)
+ +. ... +.+...+++ .+.+|. ..||......+++.+
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 0 00 111 112222332 244444 378888888888888
Q ss_pred ccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.....+ .+.++|+.||++.. ...+||...+
T Consensus 186 ~~~~~~-~g~tii~VTHd~~l--A~~~dr~i~l 215 (226)
T COG1136 186 RELNKE-RGKTIIMVTHDPEL--AKYADRVIEL 215 (226)
T ss_pred HHHHHh-cCCEEEEEcCCHHH--HHhCCEEEEE
Confidence 877544 34455555665443 3466777544
No 231
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.77 E-value=1.3e-08 Score=102.76 Aligned_cols=41 Identities=29% Similarity=0.492 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.+.
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 64 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGE 64 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 56899999999999999999999999999888999988774
No 232
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=2e-08 Score=101.80 Aligned_cols=41 Identities=29% Similarity=0.446 Sum_probs=37.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 66 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGE 66 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 56799999999999999999999999999888999888763
No 233
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=2e-08 Score=101.13 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK 62 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCC
Confidence 56799999999999999999999999999888999988774
No 234
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.76 E-value=1.4e-08 Score=110.25 Aligned_cols=41 Identities=34% Similarity=0.577 Sum_probs=38.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||||||||+++||+...+..|+|.+.|.
T Consensus 26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~ 66 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR 66 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCE
Confidence 56789999999999999999999999999999999999874
No 235
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=1.4e-08 Score=110.09 Aligned_cols=45 Identities=31% Similarity=0.438 Sum_probs=39.9
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||||||||+++||+...+..|+|.+.|.
T Consensus 23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~ 68 (351)
T PRK11432 23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE 68 (351)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCE
Confidence 3344 57899999999999999999999999999999999998874
No 236
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.75 E-value=1.9e-08 Score=102.78 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 62 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQ 62 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 56799999999999999999999999999988999988774
No 237
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.75 E-value=1.9e-08 Score=112.41 Aligned_cols=152 Identities=17% Similarity=0.217 Sum_probs=89.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehh
Q 005548 505 KIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDE 579 (691)
Q Consensus 505 ~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDE 579 (691)
.+++|+||+|+|||+|+++++..+.. ....++...+ ...+....+ .+..............+++|||
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f--~~~~~~~~~------~~~~~~f~~~~~~~~dvLlIDD 202 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDSMK------EGKLNEFREKYRKKVDVLLIDD 202 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHHh------cccHHHHHHHHHhcCCEEEEec
Confidence 46999999999999999999998732 2222222111 111111000 0111111111111345999999
Q ss_pred hhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEe-CCCCC---CChhhcCeEE---EEEEcCCCHH
Q 005548 580 IDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTA-NVVEN---IPNPLLDRME---VIAIAGYITD 652 (691)
Q Consensus 580 idkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~Ts-N~~~~---l~~aLldR~~---iI~~~~~~~~ 652 (691)
++.+... ......|+..++. +. +.++ .+|+|+ +.+.. +.+.+.+||. ++.+.+|+.+
T Consensus 203 i~~l~~~--~~~q~elf~~~n~---------l~----~~~k-~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 203 VQFLIGK--TGVQTELFHTFNE---------LH----DSGK-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred hhhhcCc--HHHHHHHHHHHHH---------HH----HcCC-eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 9876421 1122344444332 11 1123 345555 44443 4567888986 6899999999
Q ss_pred HHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 653 EKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 653 e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
.+.+|+++.+... .+.++++++.+|+++
T Consensus 267 ~r~~IL~~~~~~~----------~~~l~~ev~~~Ia~~ 294 (440)
T PRK14088 267 TRKKIARKMLEIE----------HGELPEEVLNFVAEN 294 (440)
T ss_pred HHHHHHHHHHHhc----------CCCCCHHHHHHHHhc
Confidence 9999999876632 366899999998764
No 238
>PRK09087 hypothetical protein; Validated
Probab=98.75 E-value=2.3e-08 Score=101.83 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=87.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhh
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKL 583 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl 583 (691)
++.+.|+||+|+|||||+++++...+..+ ++...+. ..... .. ...++++|+++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~-----------------~~~~~----~~-~~~~l~iDDi~~~ 99 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIG-----------------SDAAN----AA-AEGPVLIEDIDAG 99 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcc-----------------hHHHH----hh-hcCeEEEECCCCC
Confidence 45699999999999999999997654321 1111000 00001 11 1248899999876
Q ss_pred cccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC----CCCChhhcCeE---EEEEEcCCCHHHHHH
Q 005548 584 GRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV----ENIPNPLLDRM---EVIAIAGYITDEKMH 656 (691)
Q Consensus 584 ~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~----~~l~~aLldR~---~iI~~~~~~~~e~~~ 656 (691)
... ...|+..++. .. + .+..+|+|++.. ....+.+.+|+ .++.+.+++.+++.+
T Consensus 100 ~~~-----~~~lf~l~n~---------~~----~-~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 100 GFD-----ETGLFHLINS---------VR----Q-AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred CCC-----HHHHHHHHHH---------HH----h-CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 311 2345554432 11 1 244566666642 22357899999 679999999999999
Q ss_pred HHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 657 IARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 657 I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
++++.+... .+.++++++++|+++
T Consensus 161 iL~~~~~~~----------~~~l~~ev~~~La~~ 184 (226)
T PRK09087 161 VIFKLFADR----------QLYVDPHVVYYLVSR 184 (226)
T ss_pred HHHHHHHHc----------CCCCCHHHHHHHHHH
Confidence 999988752 367999999999864
No 239
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.75 E-value=1.5e-08 Score=110.74 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~ 65 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEK 65 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 56799999999999999999999999999999999988774
No 240
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.75 E-value=5.1e-09 Score=100.70 Aligned_cols=148 Identities=20% Similarity=0.284 Sum_probs=96.2
Q ss_pred HHHHHHHHH-HHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhccc----Cccccc
Q 005548 483 NDVKERILE-FIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHR----RTYIGA 556 (691)
Q Consensus 483 ~~vk~~i~~-~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~----~~~vG~ 556 (691)
+++.++|.. ..++.+++ .+++|+.+-|+||+|+|||||+|.|.+...++.|.|.+.+. +...+.+.. +..+|.
T Consensus 5 ~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~-dl~~l~~~~iP~LRR~IGv 83 (223)
T COG2884 5 ENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGH-DLSRLKGREIPFLRRQIGV 83 (223)
T ss_pred hhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCe-ecccccccccchhhheeee
Confidence 444445422 33556666 78999999999999999999999999999999999999984 555555432 567899
Q ss_pred ccchHHHHHHHhcccC---CEEE---------------------ehhhhhhcccCCCC------HHHHHH----------
Q 005548 557 MPGKMVQCLKNVGTAN---PLVL---------------------IDEIDKLGRGHAGD------PASALL---------- 596 (691)
Q Consensus 557 ~~~~i~~~l~~~~~~~---~Vll---------------------lDEidkl~~~~~~~------~~~~LL---------- 596 (691)
++|........+...| ++.+ .+-+..++...+++ .+.++.
T Consensus 84 VFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE 163 (223)
T COG2884 84 VFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE 163 (223)
T ss_pred EeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC
Confidence 9887654444433333 1111 11122222333333 233333
Q ss_pred --hhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCC
Q 005548 597 --ELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENI 633 (691)
Q Consensus 597 --~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l 633 (691)
-.||+.....+++.+.++. .-++.++++||..+.+
T Consensus 164 PTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv 200 (223)
T COG2884 164 PTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELV 200 (223)
T ss_pred CCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHH
Confidence 2788888888888887765 3467777777765444
No 241
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.75 E-value=2.4e-08 Score=100.39 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 62 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGK 62 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCC
Confidence 56799999999999999999999999999888999998774
No 242
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.74 E-value=2.5e-08 Score=100.52 Aligned_cols=41 Identities=37% Similarity=0.526 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~ 62 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR 62 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 56799999999999999999999999999888999988764
No 243
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.74 E-value=1.6e-08 Score=111.24 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=40.4
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+|+|++.+.+..|+|.+.|.
T Consensus 19 L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~ 65 (402)
T PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGD 65 (402)
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCE
Confidence 34444 57899999999999999999999999999999999998874
No 244
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.74 E-value=2.5e-08 Score=101.17 Aligned_cols=153 Identities=17% Similarity=0.223 Sum_probs=86.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccchhhhhhcccCccccccc-chHHHHHHHhcccCCEEEehh
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLADVAEIKGHRRTYIGAMP-GKMVQCLKNVGTANPLVLIDE 579 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~~~~l~g~~~~~vG~~~-~~i~~~l~~~~~~~~VlllDE 579 (691)
..++.|+||+|+|||+|+++++..+. +..-.+.+.. .+... .++.... +.+.. +........+++||+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~-~~f~~------~~~~~~~~~~~~~-~~~~~~~~DlL~iDD 105 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA-EEFIR------EFADALRDGEIEE-FKDRLRSADLLIIDD 105 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH-HHHHH------HHHHHHHTTSHHH-HHHHHCTSSEEEEET
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH-HHHHH------HHHHHHHcccchh-hhhhhhcCCEEEEec
Confidence 34689999999999999999998763 2221122211 11110 0111111 11222 223333456999999
Q ss_pred hhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCC-CC---CCChhhcCeE---EEEEEcCCCHH
Q 005548 580 IDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV-VE---NIPNPLLDRM---EVIAIAGYITD 652 (691)
Q Consensus 580 idkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~-~~---~l~~aLldR~---~iI~~~~~~~~ 652 (691)
++.+... ......|+..++. +. . .+..+|+|++. +. .+.+.|.+|+ .++.+.+|+.+
T Consensus 106 i~~l~~~--~~~q~~lf~l~n~---------~~----~-~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 106 IQFLAGK--QRTQEELFHLFNR---------LI----E-SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp GGGGTTH--HHHHHHHHHHHHH---------HH----H-TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred chhhcCc--hHHHHHHHHHHHH---------HH----h-hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 9988531 1234555555543 11 1 23345556643 33 3567788898 35899999999
Q ss_pred HHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 653 EKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 653 e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
.+..|+++..... .+.++++++++|.++
T Consensus 170 ~r~~il~~~a~~~----------~~~l~~~v~~~l~~~ 197 (219)
T PF00308_consen 170 DRRRILQKKAKER----------GIELPEEVIEYLARR 197 (219)
T ss_dssp HHHHHHHHHHHHT----------T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----------CCCCcHHHHHHHHHh
Confidence 9999999988753 255899999998764
No 245
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=5.8e-08 Score=103.63 Aligned_cols=136 Identities=16% Similarity=0.215 Sum_probs=90.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCCe--EEEEeCcc-----------chhhhhhcccCcccccccchHHH---HHHH
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRKF--FRFSVGGL-----------ADVAEIKGHRRTYIGAMPGKMVQ---CLKN 567 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~~--~~i~~~~~-----------~~~~~l~g~~~~~vG~~~~~i~~---~l~~ 567 (691)
++.++|.||.|+||+++|+++|+.+.... ..-.|+.. .|...+.....+.+|. ..+.. .+..
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~i--d~iR~l~~~~~~ 101 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGV--DQVREINEKVSQ 101 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCH--HHHHHHHHHHhh
Confidence 46799999999999999999999985422 10112111 1111111000111111 11222 2222
Q ss_pred hcc--cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEE
Q 005548 568 VGT--ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIA 645 (691)
Q Consensus 568 ~~~--~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~ 645 (691)
... ...|++||++|++.. ..+++||..|+. +..+++||++|+.++.+.+.+++||..+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~----~AaNaLLKtLEE---------------Pp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTE----AAANALLKTLEE---------------PRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred ccccCCceEEEEechhhhCH----HHHHHHHHHhcC---------------CCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 221 234999999999964 468899998875 45789999999999999899999999999
Q ss_pred EcCCCHHHHHHHHHH
Q 005548 646 IAGYITDEKMHIARD 660 (691)
Q Consensus 646 ~~~~~~~e~~~I~~~ 660 (691)
|.+++.++..+.+..
T Consensus 163 ~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 163 IHPPEEQQALDWLQA 177 (325)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999998887766554
No 246
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=1.8e-08 Score=106.05 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=40.3
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 20 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 66 (277)
T PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGE 66 (277)
T ss_pred eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 34444 57899999999999999999999999999999999998774
No 247
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.73 E-value=2.3e-08 Score=100.73 Aligned_cols=41 Identities=24% Similarity=0.469 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGL 62 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 56799999999999999999999999999888999988774
No 248
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=1.9e-08 Score=110.06 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=44.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccch
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGK 560 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~ 560 (691)
.+.+|+.++|+||||||||||+++||+...+..|+|.+.|.. ...... .+..+|+++|.
T Consensus 41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~-i~~~~~-~~r~ig~vfQ~ 99 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD-LSHVPP-YQRPINMMFQS 99 (377)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE-CCCCCH-HHCCEEEEeCC
Confidence 567999999999999999999999999999999999988742 222111 12346666554
No 249
>PRK10908 cell division protein FtsE; Provisional
Probab=98.73 E-value=2.4e-08 Score=101.39 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 64 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGH 64 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 56799999999999999999999999999889999988774
No 250
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.73 E-value=1.9e-08 Score=109.96 Aligned_cols=41 Identities=34% Similarity=0.468 Sum_probs=38.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||||||||+++||+...+..|+|.+.|.
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~ 76 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ 76 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 56789999999999999999999999999999999998874
No 251
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.73 E-value=1e-08 Score=101.83 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=52.3
Q ss_pred HHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhccc--Ccccccccch
Q 005548 490 LEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHR--RTYIGAMPGK 560 (691)
Q Consensus 490 ~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~--~~~vG~~~~~ 560 (691)
...-++.+++ .+++|++++|+||||+||||++++|++......|+|.+.|. |+..++.|. +..+++.|+.
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~-dit~~p~~~r~r~Gi~~VPeg 86 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE-DITGLPPHERARLGIAYVPEG 86 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCe-ecCCCCHHHHHhCCeEeCccc
Confidence 3333445555 67899999999999999999999999999999999999884 444443332 3445666654
No 252
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.72 E-value=6.2e-08 Score=106.77 Aligned_cols=196 Identities=18% Similarity=0.212 Sum_probs=123.4
Q ss_pred cccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhcccC
Q 005548 478 DHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHRR 551 (691)
Q Consensus 478 ~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~~ 551 (691)
+|+|-.....+..+.... .-.....+++.|.+||||..+|++|..... .+|+.|+|+.+.+ .++++|..+
T Consensus 246 ~Iig~S~~m~~~~~~akr----~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~ 321 (560)
T COG3829 246 DIIGESPAMLRVLELAKR----IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEK 321 (560)
T ss_pred hhccCCHHHHHHHHHHHh----hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCC
Confidence 566655554444333321 123456799999999999999999998874 5799999998876 577887654
Q ss_pred c-ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC
Q 005548 552 T-YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV 630 (691)
Q Consensus 552 ~-~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~ 630 (691)
+ +.|...+.-...|.. ++++-+|||||..++. ..+..||.+|...+..++.. .... .-++.+|++||..
T Consensus 322 GAFTGA~~~GK~GlfE~--A~gGTLFLDEIgempl----~LQaKLLRVLQEkei~rvG~-t~~~---~vDVRIIAATN~n 391 (560)
T COG3829 322 GAFTGASKGGKPGLFEL--ANGGTLFLDEIGEMPL----PLQAKLLRVLQEKEIERVGG-TKPI---PVDVRIIAATNRN 391 (560)
T ss_pred ccccccccCCCCcceee--ccCCeEEehhhccCCH----HHHHHHHHHHhhceEEecCC-CCce---eeEEEEEeccCcC
Confidence 3 455554311122222 2456999999998864 34567888876533222111 1112 2468999999974
Q ss_pred -------CCCChhhcCeEEEEEEcCCCH----HHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 631 -------ENIPNPLLDRMEVIAIAGYIT----DEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 631 -------~~l~~aLldR~~iI~~~~~~~----~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
..+.+.|..|+.++.+.-|+. ++...++..|+.+. ...++... -.++++++..+.++
T Consensus 392 L~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~-s~~~~~~v--~~ls~~a~~~L~~y 459 (560)
T COG3829 392 LEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKF-SRRYGRNV--KGLSPDALALLLRY 459 (560)
T ss_pred HHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHH-HHHcCCCc--ccCCHHHHHHHHhC
Confidence 446777888998865555443 33344555555543 33344332 23889998888765
No 253
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.72 E-value=4.7e-08 Score=94.83 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=72.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccC-------c-----ccccccchH---HHH
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRR-------T-----YIGAMPGKM---VQC 564 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~-------~-----~vG~~~~~i---~~~ 564 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|++.+.+.....-+..... . +.....+.. ...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHH
Confidence 5679999999999999999999999999988888887765211100000000 0 011111111 112
Q ss_pred HHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 565 LKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 565 l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.......++++++||... .||+.....+.+.+... . ..+|++||..+. ..++||+.++
T Consensus 103 aral~~~p~~lllDEPt~---------------~LD~~~~~~l~~~l~~~----~-~tiiivsh~~~~--~~~~d~i~~l 160 (166)
T cd03223 103 ARLLLHKPKFVFLDEATS---------------ALDEESEDRLYQLLKEL----G-ITVISVGHRPSL--WKFHDRVLDL 160 (166)
T ss_pred HHHHHcCCCEEEEECCcc---------------ccCHHHHHHHHHHHHHh----C-CEEEEEeCChhH--HhhCCEEEEE
Confidence 222233455999999743 35655555555555432 2 445556666653 3478887655
No 254
>PRK04132 replication factor C small subunit; Provisional
Probab=98.72 E-value=4.7e-08 Score=115.31 Aligned_cols=144 Identities=18% Similarity=0.242 Sum_probs=99.7
Q ss_pred eEEEEc--CCCCcHHHHHHHHHHHh-----cCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhc---ccCCEE
Q 005548 506 IICLSG--PPGVGKTSIGRSIARAL-----NRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVG---TANPLV 575 (691)
Q Consensus 506 ~vlL~G--PpGtGKTtLakaLA~~l-----~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~---~~~~Vl 575 (691)
+-...| |++.||||+|++||+.+ +..+.+++.+.......+. ..+........ ....|+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-----------~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-----------EKVKEFARTKPIGGASFKII 634 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-----------HHHHHHHhcCCcCCCCCEEE
Confidence 344558 99999999999999997 3456666655422122111 11111111111 112499
Q ss_pred EehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHHHHH
Q 005548 576 LIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITDEKM 655 (691)
Q Consensus 576 llDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~ 655 (691)
+|||+|++.. +.+++|+..|+. ..+++.||+++|....+.+++.+||.++.|.+++.++..
T Consensus 635 IIDEaD~Lt~----~AQnALLk~lEe---------------p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~ 695 (846)
T PRK04132 635 FLDEADALTQ----DAQQALRRTMEM---------------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIA 695 (846)
T ss_pred EEECcccCCH----HHHHHHHHHhhC---------------CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHH
Confidence 9999999964 457788887763 236889999999999999999999999999999999998
Q ss_pred HHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 656 HIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 656 ~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
..+...+.++ .+.++++++..|++
T Consensus 696 ~~L~~I~~~E----------gi~i~~e~L~~Ia~ 719 (846)
T PRK04132 696 KRLRYIAENE----------GLELTEEGLQAILY 719 (846)
T ss_pred HHHHHHHHhc----------CCCCCHHHHHHHHH
Confidence 8888766542 24466777666653
No 255
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.71 E-value=1.3e-08 Score=104.90 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=39.4
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGT 64 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCE
Confidence 3344 57899999999999999999999999999888999988774
No 256
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.71 E-value=4e-08 Score=97.80 Aligned_cols=124 Identities=19% Similarity=0.284 Sum_probs=75.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh--cCCeEEEEeCccchhhhhhcccCcccccccch-----------------
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARAL--NRKFFRFSVGGLADVAEIKGHRRTYIGAMPGK----------------- 560 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l--~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~----------------- 560 (691)
.+.+|++++|+||||+|||||+++|++.+ .+..|+|.+.|..- ... ..+..+++.++.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~-~~~--~~~~~i~~~~q~~~~~~~~t~~~~i~~~~ 107 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL-DKR--SFRKIIGYVPQDDILHPTLTVRETLMFAA 107 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC-chH--hhhheEEEccCcccCCCCCcHHHHHHHHH
Confidence 56799999999999999999999999999 88889988876421 110 001112222211
Q ss_pred --------H---HHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCC
Q 005548 561 --------M---VQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV 629 (691)
Q Consensus 561 --------i---~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~ 629 (691)
. ..........++++++||... .||......+.+.+..+. . .+..+|++||.
T Consensus 108 ~~~~LS~G~~qrv~laral~~~p~illlDEP~~---------------~LD~~~~~~l~~~l~~~~-~-~~~tiii~sh~ 170 (194)
T cd03213 108 KLRGLSGGERKRVSIALELVSNPSLLFLDEPTS---------------GLDSSSALQVMSLLRRLA-D-TGRTIICSIHQ 170 (194)
T ss_pred HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc---------------CCCHHHHHHHHHHHHHHH-h-CCCEEEEEecC
Confidence 0 011111122445889998743 355555555555554432 1 24566667777
Q ss_pred CC-CCChhhcCeEEEE
Q 005548 630 VE-NIPNPLLDRMEVI 644 (691)
Q Consensus 630 ~~-~l~~aLldR~~iI 644 (691)
.. .+ ..++||+.++
T Consensus 171 ~~~~~-~~~~d~v~~l 185 (194)
T cd03213 171 PSSEI-FELFDKLLLL 185 (194)
T ss_pred chHHH-HHhcCEEEEE
Confidence 65 34 4578888665
No 257
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.71 E-value=4.5e-08 Score=100.42 Aligned_cols=41 Identities=27% Similarity=0.438 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 63 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE
Confidence 56799999999999999999999999999888999988774
No 258
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=3.2e-08 Score=101.93 Aligned_cols=41 Identities=24% Similarity=0.452 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 65 (241)
T PRK14250 25 KFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGV 65 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 56799999999999999999999999999989999998874
No 259
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=3.2e-08 Score=99.69 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=36.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+| .++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 61 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQ 61 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCC
Confidence 45678 99999999999999999999999999999988774
No 260
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.70 E-value=5.2e-08 Score=107.36 Aligned_cols=197 Identities=16% Similarity=0.255 Sum_probs=129.7
Q ss_pred hccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcC---CeEEEEeCccch---hhhhhcc
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNR---KFFRFSVGGLAD---VAEIKGH 549 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~---~~~~i~~~~~~~---~~~l~g~ 549 (691)
...++|.....+.+.+.+..- .+..-+|++.|++||||-.+|++|.+...+ +|+.|+|+.+.. .++++||
T Consensus 140 ~~~liG~S~am~~l~~~i~kv----A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGh 215 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKV----APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGH 215 (464)
T ss_pred cCCceecCHHHHHHHHHHHHH----hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcc
Confidence 446777777666665554311 134567999999999999999999998854 899999998875 5688998
Q ss_pred cCc-ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeC
Q 005548 550 RRT-YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTAN 628 (691)
Q Consensus 550 ~~~-~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN 628 (691)
.++ +.|....+.. .|.. ...+.+|||||..++. +.+..||.+|...+..++.. ...++ -++-||++||
T Consensus 216 ekGAFTGA~~~r~G-~fE~--A~GGTLfLDEI~~mpl----~~Q~kLLRvLqe~~~~rvG~-~~~i~---vdvRiIaaT~ 284 (464)
T COG2204 216 EKGAFTGAITRRIG-RFEQ--ANGGTLFLDEIGEMPL----ELQVKLLRVLQEREFERVGG-NKPIK---VDVRIIAATN 284 (464)
T ss_pred cccCcCCcccccCc-ceeE--cCCceEEeeccccCCH----HHHHHHHHHHHcCeeEecCC-Ccccc---eeeEEEeecC
Confidence 764 3444433222 2222 2456999999999864 45667787776533222111 11111 3588999999
Q ss_pred CC-------CCCChhhcCeEEEEEEcCCCH----HHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 629 VV-------ENIPNPLLDRMEVIAIAGYIT----DEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 629 ~~-------~~l~~aLldR~~iI~~~~~~~----~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
.. ..+.+.|..|+.++.+.-|+. ++.-.++.+|+.+... ..|.. ...++.+++..+..+
T Consensus 285 ~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~-~~~~~--~~~~s~~a~~~L~~y 354 (464)
T COG2204 285 RDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAA-ELGRP--PKGFSPEALAALLAY 354 (464)
T ss_pred cCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHH-HcCCC--CCCCCHHHHHHHHhC
Confidence 64 346677888998876655554 3444666666665544 44433 356899999888765
No 261
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.70 E-value=4.4e-08 Score=101.89 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=39.4
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.+..|.|.+++.
T Consensus 28 l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~ 74 (257)
T PRK11247 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA 74 (257)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 33444 57899999999999999999999999999888898887663
No 262
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.70 E-value=9.8e-08 Score=109.68 Aligned_cols=194 Identities=19% Similarity=0.251 Sum_probs=119.1
Q ss_pred cccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---cCCeEEEEeCccch---hhhhhcccC
Q 005548 478 DHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARAL---NRKFFRFSVGGLAD---VAEIKGHRR 551 (691)
Q Consensus 478 ~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l---~~~~~~i~~~~~~~---~~~l~g~~~ 551 (691)
.++|.....+.+.+.+... .....+|+|+|++|||||++|++|.... +.++..++|..+.+ ...++|+.+
T Consensus 197 ~liG~s~~~~~~~~~~~~~----a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~ 272 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVV----ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEK 272 (534)
T ss_pred ceEECCHHHHHHHHHHHHH----hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCC
Confidence 5566665555554444321 1346789999999999999999999886 45799999987754 234556543
Q ss_pred c-ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC
Q 005548 552 T-YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV 630 (691)
Q Consensus 552 ~-~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~ 630 (691)
+ +.|...... ..+. ...++++||||++.++. ..+..|+..|+....... .. ... ...++.+|+|||..
T Consensus 273 ~~~~~~~~~~~-g~~~--~a~~GtL~ldei~~L~~----~~Q~~Ll~~l~~~~~~~~-~~--~~~-~~~~~riI~~s~~~ 341 (534)
T TIGR01817 273 GAFTGAIAQRK-GRFE--LADGGTLFLDEIGEISP----AFQAKLLRVLQEGEFERV-GG--NRT-LKVDVRLVAATNRD 341 (534)
T ss_pred CccCCCCcCCC-Cccc--ccCCCeEEEechhhCCH----HHHHHHHHHHhcCcEEEC-CC--Cce-EeecEEEEEeCCCC
Confidence 2 222211111 1111 12456999999999864 345677776654110000 00 000 01247788888753
Q ss_pred -------CCCChhhcCeEEE--EEEcCCC--HHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 631 -------ENIPNPLLDRMEV--IAIAGYI--TDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 631 -------~~l~~aLldR~~i--I~~~~~~--~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
..+.+.|..|+.. |.++++. .++...++..|+.+... ..+.. +.++++++..+.++
T Consensus 342 l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~-~~~~~---~~~s~~a~~~L~~~ 408 (534)
T TIGR01817 342 LEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNR-ENGRP---LTITPSAIRVLMSC 408 (534)
T ss_pred HHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHH-HcCCC---CCCCHHHHHHHHhC
Confidence 3466778888864 5666666 36667888888876533 33432 57999999988764
No 263
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.70 E-value=2.9e-08 Score=101.37 Aligned_cols=41 Identities=27% Similarity=0.484 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE 62 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 56799999999999999999999999999998999988774
No 264
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=2.8e-08 Score=104.33 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=83.7
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh-cccCcccccccchHHH-HHHHhcccC
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK-GHRRTYIGAMPGKMVQ-CLKNVGTAN 572 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~-g~~~~~vG~~~~~i~~-~l~~~~~~~ 572 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.. ..... ...+..+|++++.... .+..+...+
T Consensus 22 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~ 100 (274)
T PRK13647 22 KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE-VNAENEKWVRSKVGLVFQDPDDQVFSSTVWDD 100 (274)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEE-CCCCCHHHHHhhEEEEecChhhhhccCcHHHH
Confidence 3444 578999999999999999999999999999999999988742 11110 0112346666654311 000000000
Q ss_pred CEEE-------------------ehh------hhhhcccCCCC------HHHHHH------------hhcCHHHHHHHHH
Q 005548 573 PLVL-------------------IDE------IDKLGRGHAGD------PASALL------------ELLDPEQNANFLD 609 (691)
Q Consensus 573 ~Vll-------------------lDE------idkl~~~~~~~------~~~~LL------------~~LD~~~~~~~~d 609 (691)
+.+ ++. .++.....+++ .+.+|+ ..||+.....+.+
T Consensus 101 -l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~ 179 (274)
T PRK13647 101 -VAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME 179 (274)
T ss_pred -HHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 000 000 01111122222 122333 4788888888877
Q ss_pred hhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 610 HYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 610 ~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.+..+. + .+..+|++||..+.+ ..++||+.++
T Consensus 180 ~l~~~~-~-~g~tili~tH~~~~~-~~~~d~i~~l 211 (274)
T PRK13647 180 ILDRLH-N-QGKTVIVATHDVDLA-AEWADQVIVL 211 (274)
T ss_pred HHHHHH-H-CCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 776654 2 256667777877766 5678998665
No 265
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=3.4e-08 Score=99.44 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=37.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~ 60 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV 60 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 46799999999999999999999999999888999988774
No 266
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.70 E-value=3.5e-08 Score=101.45 Aligned_cols=41 Identities=32% Similarity=0.536 Sum_probs=37.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 63 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGL 63 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 56799999999999999999999999999888999998874
No 267
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.70 E-value=5.2e-08 Score=109.87 Aligned_cols=159 Identities=18% Similarity=0.248 Sum_probs=92.6
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc--------
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG-------- 548 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g-------- 548 (691)
.+++|++.+++.+.-.+ ..+++++|+||||+||||++++|++.+.+..+...+... ....+.|
T Consensus 192 ~dv~Gq~~~~~al~~aa--------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~-~i~s~~g~~~~~~~~ 262 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAA--------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETA-RIWSLVGKLIDRKQI 262 (499)
T ss_pred HHhcCcHHHHhhhhhhc--------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecc-ccccchhhhcccccc
Confidence 47899998876654443 367899999999999999999999988655443332211 1111100
Q ss_pred ---------cc---Ccccccc-cchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhcccc
Q 005548 549 ---------HR---RTYIGAM-PGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVP 615 (691)
Q Consensus 549 ---------~~---~~~vG~~-~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~ 615 (691)
+. ...+|.. ..+. ..+ ....++++||||++.+.+ .....|++.|+..+..--.... ...
T Consensus 263 ~~~Pf~~p~~s~s~~~~~ggg~~~~p-G~i--~lA~~GvLfLDEi~e~~~----~~~~~L~~~LE~~~v~i~r~g~-~~~ 334 (499)
T TIGR00368 263 KQRPFRSPHHSASKPALVGGGPIPLP-GEI--SLAHNGVLFLDELPEFKR----SVLDALREPIEDGSISISRASA-KIF 334 (499)
T ss_pred ccCCccccccccchhhhhCCccccch-hhh--hccCCCeEecCChhhCCH----HHHHHHHHHHHcCcEEEEecCc-cee
Confidence 00 0001110 0000 112 233567999999998754 4567777776542210000000 011
Q ss_pred ccCCceEEEEEeCCC------C-----------------CCChhhcCeEEE-EEEcCCCHHH
Q 005548 616 IDLSKVLFVCTANVV------E-----------------NIPNPLLDRMEV-IAIAGYITDE 653 (691)
Q Consensus 616 ~~~~~vi~I~TsN~~------~-----------------~l~~aLldR~~i-I~~~~~~~~e 653 (691)
. ..++.+|+++|.- . .+..+|+|||++ +.++.++.++
T Consensus 335 ~-pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 335 Y-PARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred c-cCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 1 2478899999952 1 488899999987 6777765543
No 268
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=2.4e-08 Score=105.12 Aligned_cols=46 Identities=22% Similarity=0.334 Sum_probs=40.4
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (279)
T PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD 69 (279)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 34444 57899999999999999999999999999999999998874
No 269
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.70 E-value=2.8e-08 Score=103.94 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=39.6
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 75 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDH 75 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 3444 57899999999999999999999999999999999988774
No 270
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.70 E-value=3e-08 Score=100.95 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=37.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 67 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGK 67 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 57899999999999999999999999999989999988774
No 271
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.70 E-value=3.4e-08 Score=115.38 Aligned_cols=129 Identities=22% Similarity=0.330 Sum_probs=85.6
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh-cccCcccccccchH-----------
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK-GHRRTYIGAMPGKM----------- 561 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~-g~~~~~vG~~~~~i----------- 561 (691)
+.+++ .+++|+.++++|++|||||||+|.|.+.+.+..|+|.++|.+ ...+. ...+..+|+.+|..
T Consensus 489 L~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~d-l~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi 567 (709)
T COG2274 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD-LNDIDLASLRRQVGYVLQDPFLFSGSIRENI 567 (709)
T ss_pred hhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe-HHhcCHHHHHhheeEEcccchhhcCcHHHHH
Confidence 34444 688999999999999999999999999999999999999864 22221 11134455555541
Q ss_pred -------------------------------------------------HHHHHHh-cccCCEEEehhhhhhcccCCCCH
Q 005548 562 -------------------------------------------------VQCLKNV-GTANPLVLIDEIDKLGRGHAGDP 591 (691)
Q Consensus 562 -------------------------------------------------~~~l~~~-~~~~~VlllDEidkl~~~~~~~~ 591 (691)
..++..+ ..+++|+++||.-.
T Consensus 568 ~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTS--------- 638 (709)
T COG2274 568 ALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATS--------- 638 (709)
T ss_pred hcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCccc---------
Confidence 1112222 22334777777632
Q ss_pred HHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 592 ASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 592 ~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.||+.+...+.+.+..+. .+..+|+.+|+...+. .+||+.++
T Consensus 639 ------aLD~~sE~~I~~~L~~~~---~~~T~I~IaHRl~ti~--~adrIiVl 680 (709)
T COG2274 639 ------ALDPETEAIILQNLLQIL---QGRTVIIIAHRLSTIR--SADRIIVL 680 (709)
T ss_pred ------ccCHhHHHHHHHHHHHHh---cCCeEEEEEccchHhh--hccEEEEc
Confidence 478877777777776654 3455555667777664 45888766
No 272
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.69 E-value=2.3e-08 Score=101.80 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=42.7
Q ss_pred HHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 488 RILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 488 ~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.....+.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 84 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR 84 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 333333445555 67899999999999999999999999999888898887663
No 273
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.69 E-value=7.4e-09 Score=101.55 Aligned_cols=118 Identities=27% Similarity=0.403 Sum_probs=56.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchh-hhhhcccCcccccccchHHHHHHHhcccCCEEEeh
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADV-AEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLID 578 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~-~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllD 578 (691)
.+..+.+++|+||+|+|||+||.+|+..+-.....+.+-...+. ..+... +. .+.....+... ...++++||
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~---~~---~~~~~~~~~~l-~~~dlLilD 115 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS---RS---DGSYEELLKRL-KRVDLLILD 115 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC---HC---CTTHCHHHHHH-HTSSCEEEE
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc---cc---ccchhhhcCcc-ccccEeccc
Confidence 45678999999999999999999999877544444444333332 223221 11 11111222222 234699999
Q ss_pred hhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC----------CCCChhhcCeE
Q 005548 579 EIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV----------ENIPNPLLDRM 641 (691)
Q Consensus 579 Eidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~----------~~l~~aLldR~ 641 (691)
|+..... .......|+++++. .+ ++...|+|||.. ..+..+++||+
T Consensus 116 DlG~~~~--~~~~~~~l~~ii~~--------R~-------~~~~tIiTSN~~~~~l~~~~~d~~~a~aildRl 171 (178)
T PF01695_consen 116 DLGYEPL--SEWEAELLFEIIDE--------RY-------ERKPTIITSNLSPSELEEVLGDRALAEAILDRL 171 (178)
T ss_dssp TCTSS-----HHHHHCTHHHHHH--------HH-------HT-EEEEEESS-HHHHHT---------------
T ss_pred ccceeee--cccccccchhhhhH--------hh-------cccCeEeeCCCchhhHhhccccccccccccccc
Confidence 9976532 11234445555543 11 123466799975 12445667776
No 274
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.69 E-value=3.9e-08 Score=106.99 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~ 60 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGR 60 (352)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 46789999999999999999999999999999999988773
No 275
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.68 E-value=3.5e-08 Score=100.07 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 62 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR 62 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 56799999999999999999999999999988999988774
No 276
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.68 E-value=4.1e-08 Score=99.01 Aligned_cols=41 Identities=29% Similarity=0.431 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 63 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQ 63 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 56799999999999999999999999999888999988764
No 277
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=4.2e-08 Score=101.05 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 63 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGE 63 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCe
Confidence 57899999999999999999999999999888999988774
No 278
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.68 E-value=5.4e-08 Score=99.90 Aligned_cols=45 Identities=29% Similarity=0.447 Sum_probs=39.2
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.+.
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 83 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL 83 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE
Confidence 3444 57899999999999999999999999999888999988764
No 279
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.68 E-value=4e-07 Score=96.76 Aligned_cols=62 Identities=29% Similarity=0.471 Sum_probs=42.1
Q ss_pred hccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcC--CeEEEEeC
Q 005548 476 DEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNR--KFFRFSVG 538 (691)
Q Consensus 476 ~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~--~~~~i~~~ 538 (691)
...++||.++.++..-.+.+-+. +.-.|+.++|.||||||||.||-+||+.|+. ||..++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~-~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKE-GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGS 86 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHT-T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGG
T ss_pred cccccChHHHHHHHHHHHHHHhc-ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccc
Confidence 35889999998887544433211 2336899999999999999999999999984 45555433
No 280
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=5e-08 Score=102.15 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=38.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 71 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ 71 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 56899999999999999999999999999989999998874
No 281
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.68 E-value=7.4e-08 Score=97.37 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 73 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK 73 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCE
Confidence 57899999999999999999999999999888899888774
No 282
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.6e-07 Score=108.81 Aligned_cols=182 Identities=19% Similarity=0.292 Sum_probs=125.3
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcC----------CeEEEEeCcc
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNR----------KFFRFSVGGL 540 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~----------~~~~i~~~~~ 540 (691)
++..--+.++|-++-+.+..+.+... ...+-+|+|+||+|||.++..+|..+-. ..+.++++.+
T Consensus 164 Ar~gklDPvIGRd~EI~r~iqIL~RR------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L 237 (786)
T COG0542 164 AREGKLDPVIGRDEEIRRTIQILSRR------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL 237 (786)
T ss_pred HhcCCCCCCcChHHHHHHHHHHHhcc------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH
Confidence 44444467889888888888877643 3456799999999999999999987632 2233333322
Q ss_pred chhhhhhcccCcccccccchHHHHHHHhcccC-CEEEehhhhhhcccC-----CCCHHHHHHhhcCHHHHHHHHHhhccc
Q 005548 541 ADVAEIKGHRRTYIGAMPGKMVQCLKNVGTAN-PLVLIDEIDKLGRGH-----AGDPASALLELLDPEQNANFLDHYLDV 614 (691)
Q Consensus 541 ~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~-~VlllDEidkl~~~~-----~~~~~~~LL~~LD~~~~~~~~d~~~~~ 614 (691)
..| .+|-|..+.++...+......+ .|+||||++.+...- +.|..+.|.-.|..
T Consensus 238 -----vAG--akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR------------- 297 (786)
T COG0542 238 -----VAG--AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR------------- 297 (786)
T ss_pred -----hcc--ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-------------
Confidence 122 4678888888888777766543 499999999877322 12344444433331
Q ss_pred cccCCceEEEEEeCCC-----CCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhh
Q 005548 615 PIDLSKVLFVCTANVV-----ENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIF 688 (691)
Q Consensus 615 ~~~~~~vi~I~TsN~~-----~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii 688 (691)
+..-+|++|... -.-|+||-+||.-|.+..|+.++...|++.. +++....|+ +.++|+++...+
T Consensus 298 ----GeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl-k~~yE~hH~-----V~i~D~Al~aAv 366 (786)
T COG0542 298 ----GELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL-KERYEAHHG-----VRITDEALVAAV 366 (786)
T ss_pred ----CCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH-HHHHHHccC-----ceecHHHHHHHH
Confidence 445566665532 2357899999999999999999999999984 444444555 679999988754
No 283
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=5.6e-08 Score=101.02 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=37.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 63 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK 63 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 57899999999999999999999999999888899888763
No 284
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=6.2e-08 Score=99.62 Aligned_cols=41 Identities=34% Similarity=0.475 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGE 64 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 56799999999999999999999999999888999988774
No 285
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=3.5e-08 Score=104.16 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=39.9
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~ 68 (283)
T PRK13636 23 KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK 68 (283)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCE
Confidence 3444 57899999999999999999999999999999999998874
No 286
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.66 E-value=3.1e-08 Score=111.20 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=92.2
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcc-------
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGH------- 549 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~------- 549 (691)
.+++|++.+++.+.-. ...|++++|+||||+|||++++.|++.+.+..+...+... .+..+.|.
T Consensus 191 ~~v~Gq~~~~~al~la--------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~-~i~s~~g~~~~~~~~ 261 (506)
T PRK09862 191 SDVIGQEQGKRGLEIT--------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESA-AILSLVNAESVQKQW 261 (506)
T ss_pred EEEECcHHHHhhhhee--------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecc-hhhhhhccccccCCc
Confidence 4678887776554222 3478999999999999999999999999766554433221 11111110
Q ss_pred -cC---------c---ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccc
Q 005548 550 -RR---------T---YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPI 616 (691)
Q Consensus 550 -~~---------~---~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~ 616 (691)
.+ + .+|.. .....-......++++|+||++.+.. ..+..|++.|+..+...-.... ...
T Consensus 262 ~~rPfr~ph~~~s~~~l~GGg--~~~~pG~l~~A~gGvLfLDEi~e~~~----~~~~~L~~~LE~g~v~I~r~g~-~~~- 333 (506)
T PRK09862 262 RQRPFRSPHHSASLTAMVGGG--AIPGPGEISLAHNGVLFLDELPEFER----RTLDALREPIESGQIHLSRTRA-KIT- 333 (506)
T ss_pred CCCCccCCCccchHHHHhCCC--ceehhhHhhhccCCEEecCCchhCCH----HHHHHHHHHHHcCcEEEecCCc-cee-
Confidence 00 0 11110 00111122334567999999988753 4567777777542210000000 111
Q ss_pred cCCceEEEEEeCCCC---------------------CCChhhcCeEEE-EEEcCCC
Q 005548 617 DLSKVLFVCTANVVE---------------------NIPNPLLDRMEV-IAIAGYI 650 (691)
Q Consensus 617 ~~~~vi~I~TsN~~~---------------------~l~~aLldR~~i-I~~~~~~ 650 (691)
-..++.+|+|+|... .++.+++|||++ +.++.++
T Consensus 334 ~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~ 389 (506)
T PRK09862 334 YPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred ccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCC
Confidence 125789999999752 477899999997 6777664
No 287
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=8.1e-08 Score=108.62 Aligned_cols=151 Identities=20% Similarity=0.374 Sum_probs=108.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCC-EEEehh
Q 005548 501 ISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDE 579 (691)
Q Consensus 501 ~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDE 579 (691)
......++|.|+|||||||+.++.|..++.++.+++|.++.... -+....+....+.++....| |+|+-.
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s---------~~~~etkl~~~f~~a~~~~pavifl~~ 498 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAES---------ASHTETKLQAIFSRARRCSPAVLFLRN 498 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcc---------cchhHHHHHHHHHHHhhcCceEEEEec
Confidence 34556799999999999999999999999999999886654311 12233445566666666555 888888
Q ss_pred hhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEE-EEEEcCCCHHHHHHHH
Q 005548 580 IDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRME-VIAIAGYITDEKMHIA 658 (691)
Q Consensus 580 idkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~-iI~~~~~~~~e~~~I~ 658 (691)
+|-+..+..++....+++.+..... ....+.+...++||+|+|..+.+++.+.+-|. .|.++.++.++|.+|+
T Consensus 499 ~dvl~id~dgged~rl~~~i~~~ls------~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iL 572 (953)
T KOG0736|consen 499 LDVLGIDQDGGEDARLLKVIRHLLS------NEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEIL 572 (953)
T ss_pred cceeeecCCCchhHHHHHHHHHHHh------cccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHH
Confidence 8877754444433333433321110 11233456789999999999999988888775 4899999999999999
Q ss_pred HHHHhHHh
Q 005548 659 RDYLEKTT 666 (691)
Q Consensus 659 ~~~l~~~~ 666 (691)
+.|+..+.
T Consensus 573 q~y~~~~~ 580 (953)
T KOG0736|consen 573 QWYLNHLP 580 (953)
T ss_pred HHHHhccc
Confidence 99987653
No 288
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.66 E-value=1.6e-07 Score=107.18 Aligned_cols=195 Identities=17% Similarity=0.247 Sum_probs=117.1
Q ss_pred cccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhcccC
Q 005548 478 DHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHRR 551 (691)
Q Consensus 478 ~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~~ 551 (691)
.++|.....+.+.+.+... ...+.+|+|+|++||||+++|++|..... .++..++|..+.+ ..+++|+.+
T Consensus 188 ~iig~s~~~~~~~~~i~~~----a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~ 263 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVV----AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVK 263 (509)
T ss_pred ceeecCHHHHHHHHHHHHH----hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccc
Confidence 3455555444444444321 13467899999999999999999998854 5799999988754 245666543
Q ss_pred c-ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC
Q 005548 552 T-YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV 630 (691)
Q Consensus 552 ~-~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~ 630 (691)
+ +.|....+. ..+.. ..++.+|||||+.++. .....|+..|+........ +......++.+|+|||..
T Consensus 264 g~~~ga~~~~~-g~~~~--a~gGtL~ldeI~~L~~----~~Q~~Ll~~l~~~~~~~~g----~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 264 GAFTGAISNRS-GKFEL--ADGGTLFLDEIGELPL----ALQAKLLRVLQYGEIQRVG----SDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cccCCCcccCC-cchhh--cCCCEEEecChhhCCH----HHHHHHHHHHhcCCEeeCC----CCcceecceEEEEecCCC
Confidence 3 222221111 11222 3466999999999864 3455666666431110000 000011357888888864
Q ss_pred -------CCCChhhcCeEEE--EEEcCCCH--HHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 631 -------ENIPNPLLDRMEV--IAIAGYIT--DEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 631 -------~~l~~aLldR~~i--I~~~~~~~--~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
..+.+.|..|+.+ |.++++.. ++.-.+++.|+.+.. ...|.. .+.++++++..|.++
T Consensus 333 l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~-~~~~~~--~~~~s~~a~~~L~~y 400 (509)
T PRK05022 333 LREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNR-ARLGLR--SLRLSPAAQAALLAY 400 (509)
T ss_pred HHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHH-HHcCCC--CCCCCHHHHHHHHhC
Confidence 3466778888865 45555543 445566667766543 333432 357999999988764
No 289
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=3.8e-08 Score=104.24 Aligned_cols=146 Identities=16% Similarity=0.253 Sum_probs=85.4
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhh-----hhhcccCcccccccchHH-HHHHH
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVA-----EIKGHRRTYIGAMPGKMV-QCLKN 567 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~-----~l~g~~~~~vG~~~~~i~-~~l~~ 567 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|..-.. ... ..+..+|+.++... ..+..
T Consensus 23 L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~-~~~~~ig~v~q~~~~~l~~~ 101 (290)
T PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK-PLRKKVGIVFQFPEHQLFEE 101 (290)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH-HHHhhEEEEeeCchhhhhhh
Confidence 34444 678999999999999999999999999999999999988752110 000 11234666666421 11111
Q ss_pred hcccCCEE-------------------Eehhh-------hhhcccCCCC------HHHHHH------------hhcCHHH
Q 005548 568 VGTANPLV-------------------LIDEI-------DKLGRGHAGD------PASALL------------ELLDPEQ 603 (691)
Q Consensus 568 ~~~~~~Vl-------------------llDEi-------dkl~~~~~~~------~~~~LL------------~~LD~~~ 603 (691)
+...+ +. +++.+ ++.....+++ .+.+|. ..||+..
T Consensus 102 tv~en-i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 102 TVEKD-ICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred hHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 11000 00 00000 1111112222 122333 4788888
Q ss_pred HHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 604 NANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 604 ~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
...+.+.+..+... .+..+|++||..+.+ ..++||+.++
T Consensus 181 ~~~l~~~L~~l~~~-~g~tviiitHd~~~~-~~~~drv~~l 219 (290)
T PRK13634 181 RKEMMEMFYKLHKE-KGLTTVLVTHSMEDA-ARYADQIVVM 219 (290)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 88888877665422 356677777877766 5688999766
No 290
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.66 E-value=4.6e-08 Score=101.85 Aligned_cols=41 Identities=22% Similarity=0.487 Sum_probs=37.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|.+++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~ 64 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR 64 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 56799999999999999999999999999888888888763
No 291
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.66 E-value=2.5e-08 Score=96.78 Aligned_cols=130 Identities=22% Similarity=0.352 Sum_probs=77.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhcccCc-ccccccchHHHHHHHhcccCCEE
Q 005548 503 QGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHRRT-YIGAMPGKMVQCLKNVGTANPLV 575 (691)
Q Consensus 503 ~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~~~-~vG~~~~~i~~~l~~~~~~~~Vl 575 (691)
...+|+|+|++||||+.+|++|..... .++..|+|..+.+ ..++.|+..+ +.|...... ..+..+ .++++
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~-G~l~~A--~~GtL 97 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKK-GLLEQA--NGGTL 97 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBE-HHHHHT--TTSEE
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccC-Cceeec--cceEE
Confidence 447899999999999999999998764 5799999998764 3567776543 222222222 333333 46799
Q ss_pred EehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC-------CCCChhhcCeEEE
Q 005548 576 LIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV-------ENIPNPLLDRMEV 643 (691)
Q Consensus 576 llDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~-------~~l~~aLldR~~i 643 (691)
|||||+.++. ..+..|++.|+........ . ... ...++.+|+|||.. ..+.+.|..|+.+
T Consensus 98 ~Ld~I~~L~~----~~Q~~Ll~~l~~~~~~~~g-~--~~~-~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 98 FLDEIEDLPP----ELQAKLLRVLEEGKFTRLG-S--DKP-VPVDVRIIASTSKDLEELVEQGRFREDLYYRLNV 164 (168)
T ss_dssp EEETGGGS-H----HHHHHHHHHHHHSEEECCT-S--SSE-EE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTT
T ss_pred eecchhhhHH----HHHHHHHHHHhhchhcccc-c--ccc-ccccceEEeecCcCHHHHHHcCCChHHHHHHhce
Confidence 9999999975 4566777776542110000 0 001 12478899998863 2355556555543
No 292
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.66 E-value=5.3e-08 Score=97.38 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh--cCCeEEEEeCccchhhhhhc--ccCcccccccchHH-------------
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARAL--NRKFFRFSVGGLADVAEIKG--HRRTYIGAMPGKMV------------- 562 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l--~~~~~~i~~~~~~~~~~l~g--~~~~~vG~~~~~i~------------- 562 (691)
.+.+|++++|+||||+|||||+++|++.. .+..|++.+.|.. ...... ..+..++++++...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~-~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~ 100 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED-ITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY 100 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEE-CCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence 56799999999999999999999999994 6778888887642 111100 00122444333311
Q ss_pred ------------HHHHHh-cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCC
Q 005548 563 ------------QCLKNV-GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV 629 (691)
Q Consensus 563 ------------~~l~~~-~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~ 629 (691)
-.+..+ ...++++++||... .||......+.+.+..+. + .+..+|++||.
T Consensus 101 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~---------------~LD~~~~~~l~~~L~~~~-~-~~~tiii~sh~ 163 (200)
T cd03217 101 VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDS---------------GLDIDALRLVAEVINKLR-E-EGKSVLIITHY 163 (200)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc---------------cCCHHHHHHHHHHHHHHH-H-CCCEEEEEecC
Confidence 011111 22344888888632 356665566666555442 1 24566667777
Q ss_pred CCCCChh-hcCeEEEE
Q 005548 630 VENIPNP-LLDRMEVI 644 (691)
Q Consensus 630 ~~~l~~a-LldR~~iI 644 (691)
.+.+ .. ++||+.++
T Consensus 164 ~~~~-~~~~~d~i~~l 178 (200)
T cd03217 164 QRLL-DYIKPDRVHVL 178 (200)
T ss_pred HHHH-HHhhCCEEEEE
Confidence 6654 44 68988665
No 293
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.66 E-value=5.7e-08 Score=100.36 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=35.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.|.+.+
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g 60 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIEL 60 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC
Confidence 4568999999999999999999999999988888887765
No 294
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.66 E-value=6.3e-08 Score=97.76 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 60 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQ 60 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 56799999999999999999999999999989999988774
No 295
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=3.8e-08 Score=104.01 Aligned_cols=146 Identities=16% Similarity=0.232 Sum_probs=85.0
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhh-----hcccCcccccccchHH-HHHHH
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEI-----KGHRRTYIGAMPGKMV-QCLKN 567 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l-----~g~~~~~vG~~~~~i~-~~l~~ 567 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.. .... ....+..+|++++... ..+..
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~-i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 101 (286)
T PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDIT-ITHKTKDKYIRPVRKRIGMVFQFPESQLFED 101 (286)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE-CccccccchHHHHHhheEEEecChHhccchh
Confidence 33444 578999999999999999999999999999999999988743 1110 0011345677766431 11110
Q ss_pred hcccCCEEE-------------------ehhh-------hhhcccCCCC------HHHHHH------------hhcCHHH
Q 005548 568 VGTANPLVL-------------------IDEI-------DKLGRGHAGD------PASALL------------ELLDPEQ 603 (691)
Q Consensus 568 ~~~~~~Vll-------------------lDEi-------dkl~~~~~~~------~~~~LL------------~~LD~~~ 603 (691)
+...+ +.+ ++.+ ++.....+++ .+.+|. ..||+..
T Consensus 102 tv~e~-i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~ 180 (286)
T PRK13646 102 TVERE-IIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180 (286)
T ss_pred hHHHH-HHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 10000 000 0000 0111112222 233333 4788888
Q ss_pred HHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 604 NANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 604 ~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
...+.+.+..+... .+..+|++||..+.+ ..++||+.++
T Consensus 181 ~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~-~~~~dri~~l 219 (286)
T PRK13646 181 KRQVMRLLKSLQTD-ENKTIILVSHDMNEV-ARYADEVIVM 219 (286)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCHHHH-HHhCCEEEEE
Confidence 88877777665322 356677777877766 5678998665
No 296
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=5.5e-08 Score=99.99 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=37.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 63 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGT 63 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCE
Confidence 57899999999999999999999999999888899988774
No 297
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=4.8e-08 Score=100.26 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=38.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 67 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGK 67 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCE
Confidence 57899999999999999999999999999988999988874
No 298
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=4.2e-08 Score=103.81 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=40.5
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA 541 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~ 541 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|..
T Consensus 23 ~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (288)
T PRK13643 23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIV 69 (288)
T ss_pred eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3444 578999999999999999999999999999999999998753
No 299
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=4.4e-08 Score=103.61 Aligned_cols=146 Identities=17% Similarity=0.278 Sum_probs=85.7
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh---cccCcccccccchHHH-HHHHhc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK---GHRRTYIGAMPGKMVQ-CLKNVG 569 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~---g~~~~~vG~~~~~i~~-~l~~~~ 569 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.. ..... ...+..+|++++.... .+..+.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~-~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv 101 (287)
T PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVD-ITDKKVKLSDIRKKVGLVFQYPEYQLFEETI 101 (287)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEE-CCCcCccHHHHhhceEEEecCchhccccccH
Confidence 34444 578999999999999999999999999999999999988743 21110 0112346666664311 000000
Q ss_pred ccCCEE-------------------Eehh--------hhhhcccCCCC------HHHHHH------------hhcCHHHH
Q 005548 570 TANPLV-------------------LIDE--------IDKLGRGHAGD------PASALL------------ELLDPEQN 604 (691)
Q Consensus 570 ~~~~Vl-------------------llDE--------idkl~~~~~~~------~~~~LL------------~~LD~~~~ 604 (691)
..+ +. +++. .++.....+++ .+.+|. ..||+...
T Consensus 102 ~e~-l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~ 180 (287)
T PRK13637 102 EKD-IAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180 (287)
T ss_pred HHH-HHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence 000 00 0110 11111222222 233333 48888888
Q ss_pred HHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 605 ANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 605 ~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
..+.+.+.++... .+..+|++||..+.+ ..++||+.++
T Consensus 181 ~~l~~~l~~l~~~-~g~tvi~vtHd~~~~-~~~~drv~~l 218 (287)
T PRK13637 181 DEILNKIKELHKE-YNMTIILVSHSMEDV-AKLADRIIVM 218 (287)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 8888877665422 256677777777665 5678999766
No 300
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=4.9e-08 Score=102.83 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=40.5
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~ 69 (279)
T PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGM 69 (279)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Confidence 34444 57899999999999999999999999999999999998874
No 301
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.65 E-value=6.6e-08 Score=113.55 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=101.8
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccc---------------cCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCe---
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKL---------------RGISQGKIICLSGPPGVGKTSIGRSIARALNRKF--- 532 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~---------------~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~--- 532 (691)
+-..+...|+|.+++|+.+.-.+.-..- ..+....++||+|+||||||++|+.++....+..
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~yts 523 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTS 523 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCC
Confidence 4456677899999999888555432110 0122233799999999999999999998764332
Q ss_pred ----EEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHH
Q 005548 533 ----FRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFL 608 (691)
Q Consensus 533 ----~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~ 608 (691)
..+.+.+. ........+.....+| ......+++++|||++++.. .....|++.|+..+.. +.
T Consensus 524 G~~~s~vgLTa~---~~~~d~~tG~~~le~G------aLvlAdgGtL~IDEidkms~----~~Q~aLlEaMEqqtIs-I~ 589 (915)
T PTZ00111 524 GKSSSSVGLTAS---IKFNESDNGRAMIQPG------AVVLANGGVCCIDELDKCHN----ESRLSLYEVMEQQTVT-IA 589 (915)
T ss_pred CCCCccccccch---hhhcccccCcccccCC------cEEEcCCCeEEecchhhCCH----HHHHHHHHHHhCCEEE-Ee
Confidence 11111111 0000000000000011 11223456999999999864 3456778777542210 00
Q ss_pred HhhccccccCCceEEEEEeCCCC-------------CCChhhcCeEEEE--EEcCCCHHHHHHHHHHHHh
Q 005548 609 DHYLDVPIDLSKVLFVCTANVVE-------------NIPNPLLDRMEVI--AIAGYITDEKMHIARDYLE 663 (691)
Q Consensus 609 d~~~~~~~~~~~vi~I~TsN~~~-------------~l~~aLldR~~iI--~~~~~~~~e~~~I~~~~l~ 663 (691)
..-.... -..++.+|+|+|... .+++++++||++| .+..++.+.-..|+.+.+.
T Consensus 590 KaGi~~t-L~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 590 KAGIVAT-LKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred cCCccee-cCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 0000001 125789999999852 3789999999754 5666666666666666554
No 302
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.65 E-value=5.9e-08 Score=105.63 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 19 ~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~ 59 (354)
T TIGR02142 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR 59 (354)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 46789999999999999999999999999999999988774
No 303
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.65 E-value=5.4e-08 Score=98.16 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=37.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 61 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCc
Confidence 56799999999999999999999999999888899888774
No 304
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.64 E-value=6.1e-08 Score=100.44 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGE 62 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 57899999999999999999999999999988999988774
No 305
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=8.3e-08 Score=100.64 Aligned_cols=46 Identities=20% Similarity=0.445 Sum_probs=40.0
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 71 (271)
T PRK13632 25 LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGI 71 (271)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 34444 57899999999999999999999999999988999988774
No 306
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.64 E-value=9.6e-08 Score=97.34 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=39.4
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHh-----cCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARAL-----NRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l-----~~~~~~i~~~~~ 540 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+ .+..|+|.+.|.
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 67 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGK 67 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCE
Confidence 3444 57799999999999999999999999999 888899998874
No 307
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=7.1e-08 Score=103.80 Aligned_cols=147 Identities=14% Similarity=0.223 Sum_probs=85.7
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC----CeEEEEeCccchhhh-----hhcccCcccccccchHHH-
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNR----KFFRFSVGGLADVAE-----IKGHRRTYIGAMPGKMVQ- 563 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~----~~~~i~~~~~~~~~~-----l~g~~~~~vG~~~~~i~~- 563 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.. ..|+|.+.|.. ... ....++..+|+++|....
T Consensus 23 l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~-i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 101 (326)
T PRK11022 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD-LQRISEKERRNLVGAEVAMIFQDPMTS 101 (326)
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE-CCcCCHHHHHHHhCCCEEEEecCchhh
Confidence 34444 6789999999999999999999999999863 57888888742 221 111122346666665311
Q ss_pred ---------HHHHhcc-cCC----------EEE-----ehh----hhhhcccCCCC------HHHHHH------------
Q 005548 564 ---------CLKNVGT-ANP----------LVL-----IDE----IDKLGRGHAGD------PASALL------------ 596 (691)
Q Consensus 564 ---------~l~~~~~-~~~----------Vll-----lDE----idkl~~~~~~~------~~~~LL------------ 596 (691)
.+..... ... .-+ +++ +++.....+++ .+.+|.
T Consensus 102 l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPt 181 (326)
T PRK11022 102 LNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPT 181 (326)
T ss_pred cCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 0000000 000 000 110 11111222332 122333
Q ss_pred hhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 597 ELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 597 ~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
..||......+.+.+..+..+ .+..+|++||....+ ..++||+.++
T Consensus 182 s~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~-~~~adri~vm 227 (326)
T PRK11022 182 TALDVTIQAQIIELLLELQQK-ENMALVLITHDLALV-AEAAHKIIVM 227 (326)
T ss_pred CCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 488888888888888766432 356677778877765 5688999766
No 308
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.64 E-value=8.3e-08 Score=99.49 Aligned_cols=40 Identities=28% Similarity=0.432 Sum_probs=36.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.+
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~ 65 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG 65 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 5789999999999999999999999999988888887654
No 309
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.64 E-value=9.5e-08 Score=97.11 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=37.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|.|.+.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~ 62 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 46799999999999999999999999999888898887763
No 310
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=4.4e-08 Score=105.05 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=40.6
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 42 L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~ 88 (320)
T PRK13631 42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDI 88 (320)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCE
Confidence 44444 67899999999999999999999999999999999998874
No 311
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.64 E-value=5.8e-08 Score=101.45 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=37.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 69 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE 69 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCE
Confidence 56799999999999999999999999999888899988764
No 312
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.63 E-value=9.6e-08 Score=95.56 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=37.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG 62 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 56799999999999999999999999999888888887763
No 313
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.63 E-value=7.8e-08 Score=98.30 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=37.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~----~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~ 52 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGR 52 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCE
Confidence 4679999999999999999999999999987 7888888774
No 314
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.63 E-value=2.2e-08 Score=104.20 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=38.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 68 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68 (258)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCc
Confidence 57899999999999999999999999999999999988774
No 315
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.63 E-value=7.3e-08 Score=97.74 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 67 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQ 67 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 56799999999999999999999999999999999988764
No 316
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.7e-08 Score=105.10 Aligned_cols=109 Identities=19% Similarity=0.282 Sum_probs=91.6
Q ss_pred CCCCCCCeEEEEecCCCcccCCceeeEEeCCHhHHHHHHHHHhcCCCeEEEEEeeCCCCCCCCCcccccccccccccccc
Q 005548 141 PRLEDYLSVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLLKDDSLTDASTDTEKSVSDLKGKELFN 220 (691)
Q Consensus 141 ~~~~~~~~lPlfPL~~~VLfPg~~lpL~Ifepry~~~v~~~~~~~~~~~gv~l~k~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (691)
...+....+|+||+ .+..||+...|++||||+|..|+++++..+...||+++....... .
T Consensus 169 e~~~~e~~~p~f~v-~~~~~p~v~cpl~vfe~~y~lm~~r~~~~~~~rf~i~~sd~~~~~-------------------~ 228 (398)
T KOG4159|consen 169 EESSRECESPLFPV-CTLAFPEVPCPLQVFEPRYRLMIRRLLETGDKRFGICLSDSSKGS-------------------G 228 (398)
T ss_pred ccccccccCCcccc-cccccccccCcHHHccchHHHHHHHHHhhcceeeeeecccccCCc-------------------c
Confidence 34456779999998 799999999999999999999999999997778888775442211 2
Q ss_pred ccccceeEEEEEEe-----cCeEEEEEeeeEEEEEEeeecCCe-EEEEEecCCCC
Q 005548 221 RLHEVGTLAQISSI-----QGDQVILIGHRRLRITEMVSEDPL-TVKVDHLKDKP 269 (691)
Q Consensus 221 ~l~~vGt~a~I~~~-----g~~~i~v~G~~R~rI~~~~~~~p~-~a~V~~l~d~~ 269 (691)
..+.+||+..|..+ |+..+...|..|||+......++| +|+|+++++.+
T Consensus 229 ~~~e~g~i~ei~~v~~l~dgrsv~~~~gk~r~r~~~~~~~d~y~~~~ve~l~d~~ 283 (398)
T KOG4159|consen 229 QAAEIGCILEIRKVESLGDGRSVVDSIGKSRFRVLLFSQTDGYPVADVEYLEDRP 283 (398)
T ss_pred hhhhccchhhhcccccccccchhhhhhcCcceeeeeecCCCcceeeeeeeeeCcH
Confidence 46789999999988 788888889999999999988887 89999999854
No 317
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=5.1e-08 Score=103.08 Aligned_cols=146 Identities=16% Similarity=0.239 Sum_probs=84.9
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhh-----hcccCcccccccchHH-HHHHH
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEI-----KGHRRTYIGAMPGKMV-QCLKN 567 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l-----~g~~~~~vG~~~~~i~-~~l~~ 567 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.. +... ....+..+|+.++... ..+..
T Consensus 23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~-~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 101 (287)
T PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYH-ITPETGNKNLKKLRKKVSLVFQFPEAQLFEN 101 (287)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE-CccccccchHHHHHhceEEEEeChhhhhccc
Confidence 34444 578999999999999999999999999999999999998742 1110 0011234566655421 00000
Q ss_pred hcccC--------CE---------------EEeh-h-hhhhcccCCCC------HHHHHH------------hhcCHHHH
Q 005548 568 VGTAN--------PL---------------VLID-E-IDKLGRGHAGD------PASALL------------ELLDPEQN 604 (691)
Q Consensus 568 ~~~~~--------~V---------------lllD-E-idkl~~~~~~~------~~~~LL------------~~LD~~~~ 604 (691)
+...+ .. +=++ + .++.....+++ .+.+|+ ..||+...
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~ 181 (287)
T PRK13641 102 TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR 181 (287)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence 00000 00 0000 0 01111222322 122222 47888887
Q ss_pred HHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 605 ANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 605 ~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
..+.+.+..+. + .+..+|++||..+.+ ..++||+.++
T Consensus 182 ~~l~~~l~~l~-~-~g~tvlivsH~~~~~-~~~~d~v~~l 218 (287)
T PRK13641 182 KEMMQLFKDYQ-K-AGHTVILVTHNMDDV-AEYADDVLVL 218 (287)
T ss_pred HHHHHHHHHHH-h-CCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 77777776653 2 356677788887766 5788999766
No 318
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.63 E-value=9.7e-08 Score=98.01 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++|+.++|+||||+|||||+++|++.+.+..|.+.+.|.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 65 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGV 65 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCE
Confidence 56799999999999999999999999999888899988774
No 319
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.62 E-value=2.5e-08 Score=101.67 Aligned_cols=45 Identities=18% Similarity=0.380 Sum_probs=39.2
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|+.++|+||||+|||||+++|++...+..|++.+.|.
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 69 (225)
T PRK10247 24 NNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69 (225)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCE
Confidence 3344 57899999999999999999999999998888999988764
No 320
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.62 E-value=8.2e-08 Score=99.31 Aligned_cols=41 Identities=27% Similarity=0.484 Sum_probs=37.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDI 65 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 56799999999999999999999999999888899888764
No 321
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.62 E-value=1.1e-06 Score=87.67 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=101.9
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC---eEEEEeCccchhhhhhcccCcc
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRK---FFRFSVGGLADVAEIKGHRRTY 553 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~---~~~i~~~~~~~~~~l~g~~~~~ 553 (691)
.+++|++..++.+.++....- .-.+..+++|+|.-|+|||+|+||+-..+... .++|+-.. +..+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d---l~~L------- 127 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED---LATL------- 127 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH---HhhH-------
Confidence 378999999999877654221 11345679999999999999999998887544 33333222 1111
Q ss_pred cccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCC
Q 005548 554 IGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENI 633 (691)
Q Consensus 554 vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l 633 (691)
..+...++... ..=|+|.|++-- +...+....|-..||. ++.....|++|.+|||+-..+
T Consensus 128 -----p~l~~~Lr~~~-~kFIlFcDDLSF---e~gd~~yK~LKs~LeG-----------~ve~rP~NVl~YATSNRRHLl 187 (287)
T COG2607 128 -----PDLVELLRARP-EKFILFCDDLSF---EEGDDAYKALKSALEG-----------GVEGRPANVLFYATSNRRHLL 187 (287)
T ss_pred -----HHHHHHHhcCC-ceEEEEecCCCC---CCCchHHHHHHHHhcC-----------CcccCCCeEEEEEecCCcccc
Confidence 11222222221 222889897621 1122345556666664 333346899999999976443
Q ss_pred Ch----------------------hhcCeEEE-EEEcCCCHHHHHHHHHHHHhH
Q 005548 634 PN----------------------PLLDRMEV-IAIAGYITDEKMHIARDYLEK 664 (691)
Q Consensus 634 ~~----------------------aLldR~~i-I~~~~~~~~e~~~I~~~~l~~ 664 (691)
++ .|-|||.. +.|.+.+.++..+|+..|...
T Consensus 188 ~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 188 PEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred cHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 21 36689986 799999999999999999964
No 322
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=9.9e-08 Score=97.65 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 64 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGH 64 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCE
Confidence 56799999999999999999999999999988999988774
No 323
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=6e-08 Score=101.71 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=37.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 63 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCE
Confidence 56799999999999999999999999999999999988774
No 324
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.62 E-value=1e-07 Score=95.64 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~ 63 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGE 63 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 57799999999999999999999999999999999988763
No 325
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=8.6e-08 Score=98.09 Aligned_cols=41 Identities=24% Similarity=0.431 Sum_probs=37.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 61 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ 61 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCe
Confidence 56799999999999999999999999999888898888774
No 326
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=2.7e-07 Score=98.31 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=86.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhcCCeEE-E-Ee--------CccchhhhhhcccCcccc------cccchHHHH---H
Q 005548 505 KIICLSGPPGVGKTSIGRSIARALNRKFFR-F-SV--------GGLADVAEIKGHRRTYIG------AMPGKMVQC---L 565 (691)
Q Consensus 505 ~~vlL~GPpGtGKTtLakaLA~~l~~~~~~-i-~~--------~~~~~~~~l~g~~~~~vG------~~~~~i~~~---l 565 (691)
+.++|+||+|+||+++|.++|+.+...... . .+ +.-.|...+... ....| ..-..+... +
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCcccccccccccHHHHHHHHHHH
Confidence 459999999999999999999888533100 0 00 000011111000 00001 001112221 1
Q ss_pred HHhcc--cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEE
Q 005548 566 KNVGT--ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEV 643 (691)
Q Consensus 566 ~~~~~--~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~i 643 (691)
..... ...|++||++|++.. ..+++||..|+. ...+++||+++|.++.+.+.+.+||..
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~----~AaNaLLKtLEE---------------Pp~~~~fiL~~~~~~~lLpTIrSRCq~ 166 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR----AACNALLKTLEE---------------PSPGRYLWLISAQPARLPATIRSRCQR 166 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH----HHHHHHHHHhhC---------------CCCCCeEEEEECChhhCchHHHhhheE
Confidence 22211 224999999999964 468899988875 346899999999999998999999999
Q ss_pred EEEcCCCHHHHHHHHHH
Q 005548 644 IAIAGYITDEKMHIARD 660 (691)
Q Consensus 644 I~~~~~~~~e~~~I~~~ 660 (691)
+.|..++.++..+.+..
T Consensus 167 i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 167 LEFKLPPAHEALAWLLA 183 (319)
T ss_pred eeCCCcCHHHHHHHHHH
Confidence 99999998877666554
No 327
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=7.8e-08 Score=100.48 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=37.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 73 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCE
Confidence 56799999999999999999999999999888898888774
No 328
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.62 E-value=7.5e-08 Score=100.05 Aligned_cols=41 Identities=29% Similarity=0.439 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 63 (256)
T TIGR03873 23 TAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGV 63 (256)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCE
Confidence 56799999999999999999999999999988999988774
No 329
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.61 E-value=1.7e-07 Score=104.85 Aligned_cols=176 Identities=23% Similarity=0.319 Sum_probs=106.3
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhccccC------CCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhh
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLRG------ISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVA 544 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~------~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~ 544 (691)
+.+++...|||++++|+.+.-.+--..-.. ....-++||+|.||+|||.+++.+++.+.+..++ +.-|-..+
T Consensus 423 La~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSav- 500 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAV- 500 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchh-
Confidence 557788899999999999865553221111 1222579999999999999999999998765443 21111100
Q ss_pred hhhcccCcccccccch---HHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhc-cccccCCc
Q 005548 545 EIKGHRRTYIGAMPGK---MVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYL-DVPIDLSK 620 (691)
Q Consensus 545 ~l~g~~~~~vG~~~~~---i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~-~~~~~~~~ 620 (691)
.+ ..|+...+.. +.+.-......+++..|||+||+..+ ..+.|+++|+..+...-..++. .+ ..+
T Consensus 501 GL----TayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dS----trSvLhEvMEQQTvSIAKAGII~sL---NAR 569 (804)
T KOG0478|consen 501 GL----TAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDS----TRSVLHEVMEQQTLSIAKAGIIASL---NAR 569 (804)
T ss_pred cc----eeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHH----HHHHHHHHHHHhhhhHhhcceeeec---ccc
Confidence 00 1122221111 11111223346779999999999632 3568888887654432222222 22 247
Q ss_pred eEEEEEeCCCC-------------CCChhhcCeEEEE--EEcCCCHHHHHHHHH
Q 005548 621 VLFVCTANVVE-------------NIPNPLLDRMEVI--AIAGYITDEKMHIAR 659 (691)
Q Consensus 621 vi~I~TsN~~~-------------~l~~aLldR~~iI--~~~~~~~~e~~~I~~ 659 (691)
+.|++++|... .+++.|++||+.| -+..++...-+.+..
T Consensus 570 ~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~ 623 (804)
T KOG0478|consen 570 CSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLAD 623 (804)
T ss_pred ceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHH
Confidence 88999999653 3889999999864 566665543333333
No 330
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.61 E-value=2.4e-07 Score=99.74 Aligned_cols=197 Identities=17% Similarity=0.230 Sum_probs=118.0
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhccc
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHR 550 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~ 550 (691)
++++|.....+.+.+.+... ...+.+|+|+|++||||+++|++|..... .+++.++|..+.+ ...++|+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~----a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~ 81 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRL----APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE 81 (326)
T ss_pred CccEECCHHHHHHHHHHHHH----hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHcccc
Confidence 35667666666665554322 13567899999999999999999987764 5799999988654 23445544
Q ss_pred Cc-ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCC
Q 005548 551 RT-YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV 629 (691)
Q Consensus 551 ~~-~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~ 629 (691)
.+ +.|...... ..+. ...++.+||||++.++. ..+..|+..++....... .. ... ...++.+|+|++.
T Consensus 82 ~~~~~g~~~~~~-g~l~--~a~gGtL~l~~i~~L~~----~~Q~~L~~~l~~~~~~~~-g~--~~~-~~~~~RiI~~s~~ 150 (326)
T PRK11608 82 AGAFTGAQKRHP-GRFE--RADGGTLFLDELATAPM----LVQEKLLRVIEYGELERV-GG--SQP-LQVNVRLVCATNA 150 (326)
T ss_pred ccccCCcccccC-Cchh--ccCCCeEEeCChhhCCH----HHHHHHHHHHhcCcEEeC-CC--Cce-eeccEEEEEeCch
Confidence 32 222221111 1122 22456999999999864 345566666643110000 00 000 0125778888875
Q ss_pred C-------CCCChhhcCeEEE--EEEcCCCH--HHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 630 V-------ENIPNPLLDRMEV--IAIAGYIT--DEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 630 ~-------~~l~~aLldR~~i--I~~~~~~~--~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
. ..+.+.|..|+.. |.++++.. ++...++..|+..... ..+... ...++++++..+.++
T Consensus 151 ~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~-~~~~~~-~~~~s~~al~~L~~y 220 (326)
T PRK11608 151 DLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCR-ELGLPL-FPGFTERARETLLNY 220 (326)
T ss_pred hHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHH-HhCCCC-CCCCCHHHHHHHHhC
Confidence 3 3466788889854 56666553 4556778888766432 333221 135899999887764
No 331
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.61 E-value=7.1e-08 Score=104.81 Aligned_cols=41 Identities=32% Similarity=0.470 Sum_probs=38.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||||||||+++|++.+.+..|+|.+.|.
T Consensus 24 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~ 64 (353)
T PRK10851 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGT 64 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 56799999999999999999999999999999999998874
No 332
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.61 E-value=1e-06 Score=92.30 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=47.8
Q ss_pred EEEEEeCCC------------CCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 622 LFVCTANVV------------ENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 622 i~I~TsN~~------------~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
++|++||+. ..+|..|+||+.+|...+|+.++..+|++..... +.+.+++++++++..
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~iRa~e----------e~i~l~~~Ale~L~~ 391 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRIRAKE----------EDIELSDDALEYLTD 391 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHHhhhh----------hccccCHHHHHHHHh
Confidence 566788864 4588899999999999999999999999987654 347789999988753
No 333
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.61 E-value=1.2e-07 Score=102.80 Aligned_cols=196 Identities=19% Similarity=0.320 Sum_probs=121.5
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----cCCeEEEEeCccch---hhhhhcc
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARAL----NRKFFRFSVGGLAD---VAEIKGH 549 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l----~~~~~~i~~~~~~~---~~~l~g~ 549 (691)
.+++|-+.--+.+.+.+.. ..+.+.+++++|++|+||+.+|++|.... ..+++.++|+.+.+ ..+++||
T Consensus 78 ~~LIG~~~~~~~~~eqik~----~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~ 153 (403)
T COG1221 78 DDLIGESPSLQELREQIKA----YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGH 153 (403)
T ss_pred hhhhccCHHHHHHHHHHHh----hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhcc
Confidence 4556655544444444432 23577899999999999999999998554 45799999987765 4567787
Q ss_pred cCc-ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeC
Q 005548 550 RRT-YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTAN 628 (691)
Q Consensus 550 ~~~-~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN 628 (691)
.++ +.|...++. ..+..+ ..+.+|+|||..++. .....|+..||.....++.. -.. ...++.+|++||
T Consensus 154 ~kGaftGa~~~k~-Glfe~A--~GGtLfLDEI~~LP~----~~Q~kLl~~le~g~~~rvG~-~~~---~~~dVRli~AT~ 222 (403)
T COG1221 154 EKGAFTGAQGGKA-GLFEQA--NGGTLFLDEIHRLPP----EGQEKLLRVLEEGEYRRVGG-SQP---RPVDVRLICATT 222 (403)
T ss_pred ccceeecccCCcC-chheec--CCCEEehhhhhhCCH----hHHHHHHHHHHcCceEecCC-CCC---cCCCceeeeccc
Confidence 654 555433332 223332 356999999999875 45678888888744333322 111 235688888887
Q ss_pred CC--CCCCh--hhcCeEEE--EEEcCCCH--HHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 629 VV--ENIPN--PLLDRMEV--IAIAGYIT--DEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 629 ~~--~~l~~--aLldR~~i--I~~~~~~~--~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
.. +.+-. .|.+|..+ |+++++-. .++..++..|+..... ..+... ...+++++..++.+
T Consensus 223 ~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~-~l~~~~--~~~~~~a~~~L~~y 289 (403)
T COG1221 223 EDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEAR-RLGLPL--SVDSPEALRALLAY 289 (403)
T ss_pred cCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHH-HcCCCC--CCCCHHHHHHHHhC
Confidence 53 22223 46665543 56666553 5556677777776544 334332 22346777777654
No 334
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=6.2e-08 Score=104.26 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=86.8
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh----cccCcccccccchHH-------
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK----GHRRTYIGAMPGKMV------- 562 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~----g~~~~~vG~~~~~i~------- 562 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|. +...+. ...+..+|+++|...
T Consensus 31 l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~-~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~ 109 (327)
T PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQ-DLLKADPEAQKLLRQKIQIVFQNPYGSLNPRK 109 (327)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCE-EcCcCCHHHHHHHhCCEEEEEcCchhhcCCcc
Confidence 34444 57899999999999999999999999999888899998874 222111 011235777766531
Q ss_pred ---HHHHHhccc----CC-------EEEehh-------hhhhcccCCCC------HHHHHH------------hhcCHHH
Q 005548 563 ---QCLKNVGTA----NP-------LVLIDE-------IDKLGRGHAGD------PASALL------------ELLDPEQ 603 (691)
Q Consensus 563 ---~~l~~~~~~----~~-------VlllDE-------idkl~~~~~~~------~~~~LL------------~~LD~~~ 603 (691)
..+...... +. .-+++. .++.....+++ .+.+|+ ..||...
T Consensus 110 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~ 189 (327)
T PRK11308 110 KVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189 (327)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHH
Confidence 111100000 00 000010 11111222332 233333 4788888
Q ss_pred HHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 604 NANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 604 ~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
...+.+.+..+..+ .+..+|++||+...+ ..++||+.++
T Consensus 190 ~~~i~~lL~~l~~~-~g~til~iTHdl~~~-~~~adrv~vm 228 (327)
T PRK11308 190 QAQVLNLMMDLQQE-LGLSYVFISHDLSVV-EHIADEVMVM 228 (327)
T ss_pred HHHHHHHHHHHHHH-cCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 88888877765432 356677777877666 5688998766
No 335
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.61 E-value=1.3e-07 Score=105.84 Aligned_cols=157 Identities=14% Similarity=0.176 Sum_probs=94.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhcC--CeEEEEeCccch-hhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhh
Q 005548 505 KIICLSGPPGVGKTSIGRSIARALNR--KFFRFSVGGLAD-VAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEID 581 (691)
Q Consensus 505 ~~vlL~GPpGtGKTtLakaLA~~l~~--~~~~i~~~~~~~-~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEid 581 (691)
.++.|+|++|+|||+|+++++..+.. +...+.+-...+ ...+... ++...+.+ ..+........+++|||++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~----l~~~~~~~-~~~~~~~~~~dvLiIDDiq 216 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI----LQKTHKEI-EQFKNEICQNDVLIIDDVQ 216 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH----HHHhhhHH-HHHHHHhccCCEEEEeccc
Confidence 56999999999999999999997642 222222211111 1111110 00000112 1222223345599999998
Q ss_pred hhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC----CCCChhhcCeEE---EEEEcCCCHHHH
Q 005548 582 KLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV----ENIPNPLLDRME---VIAIAGYITDEK 654 (691)
Q Consensus 582 kl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~----~~l~~aLldR~~---iI~~~~~~~~e~ 654 (691)
.+... ......|+..++... + .+..+|+|+|.. ..+++.+.+||. ++.+.+|+.+++
T Consensus 217 ~l~~k--~~~~e~lf~l~N~~~-------------~-~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 217 FLSYK--EKTNEIFFTIFNNFI-------------E-NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred cccCC--HHHHHHHHHHHHHHH-------------H-cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 77421 123445555544311 1 233567787754 235678889995 579999999999
Q ss_pred HHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 655 MHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 655 ~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
.+|+++.+... |+. +.++++++.+|+.+
T Consensus 281 ~~iL~~~~~~~-----gl~---~~l~~evl~~Ia~~ 308 (450)
T PRK14087 281 TAIIKKEIKNQ-----NIK---QEVTEEAINFISNY 308 (450)
T ss_pred HHHHHHHHHhc-----CCC---CCCCHHHHHHHHHc
Confidence 99999988742 321 36899999998764
No 336
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=6.3e-07 Score=95.49 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=88.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCCeEE-EEeCcc-----------chhhhhhccc-CcccccccchHHH---HHHH
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRKFFR-FSVGGL-----------ADVAEIKGHR-RTYIGAMPGKMVQ---CLKN 567 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~-i~~~~~-----------~~~~~l~g~~-~~~vG~~~~~i~~---~l~~ 567 (691)
++.++|.||.|+||+++|+.+|+.+...... -.|+.- .|...+.... .+.++. ..+.. .+..
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~v--dqiR~l~~~~~~ 102 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITV--EQIRQCNRLAQE 102 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCH--HHHHHHHHHHhh
Confidence 3569999999999999999999988533211 111110 0111110000 011111 11221 2222
Q ss_pred hcc--cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEE
Q 005548 568 VGT--ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIA 645 (691)
Q Consensus 568 ~~~--~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~ 645 (691)
... ...|++||++|++.. ..+++||..|+. +..+++||++|+.++.+.+.+++||..+.
T Consensus 103 ~~~~~~~kV~iI~~ae~m~~----~AaNaLLKtLEE---------------Pp~~t~fiL~t~~~~~lLpTI~SRCq~~~ 163 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMNE----SASNALLKTLEE---------------PAPNCLFLLVTHNQKRLLPTIVSRCQQWV 163 (319)
T ss_pred CcccCCceEEEecchhhhCH----HHHHHHHHHhcC---------------CCCCeEEEEEECChhhChHHHHhcceeEe
Confidence 211 234999999999963 468899998875 45789999999999988899999999999
Q ss_pred EcCCCHHHHHHHHHH
Q 005548 646 IAGYITDEKMHIARD 660 (691)
Q Consensus 646 ~~~~~~~e~~~I~~~ 660 (691)
|..++.++..+.+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999998877665543
No 337
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=9.6e-08 Score=98.34 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=37.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++...+..|+|.+.|.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 64 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 56799999999999999999999999999989999998774
No 338
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.61 E-value=9e-08 Score=100.27 Aligned_cols=41 Identities=29% Similarity=0.501 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE 69 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 57899999999999999999999999999888899988763
No 339
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.60 E-value=1.3e-07 Score=91.34 Aligned_cols=41 Identities=27% Similarity=0.432 Sum_probs=37.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+..|..+.++||+|||||||.+.+|++..+.-++|.+++.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r 67 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCE
Confidence 57789999999999999999999999999999888887764
No 340
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.60 E-value=1.1e-07 Score=95.19 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 60 (206)
T TIGR03608 20 TIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGK 60 (206)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 46789999999999999999999999999988999988774
No 341
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=9.7e-08 Score=99.18 Aligned_cols=41 Identities=32% Similarity=0.496 Sum_probs=37.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.+.+.|.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (255)
T PRK11231 24 SLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK 64 (255)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCE
Confidence 46799999999999999999999999999888898888774
No 342
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.60 E-value=8.1e-08 Score=100.37 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=38.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 73 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQ 73 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 57899999999999999999999999999999999998874
No 343
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.60 E-value=1e-07 Score=97.48 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=36.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 47 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGK 47 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 46789999999999999999999999999888898887663
No 344
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=1e-07 Score=97.66 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=39.6
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
..++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 71 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQ 71 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 3344 57899999999999999999999999999989999998874
No 345
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.60 E-value=8.3e-08 Score=99.02 Aligned_cols=128 Identities=23% Similarity=0.353 Sum_probs=86.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch----hhhhhcccCcccccccchHHHHHHHhcc-----
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD----VAEIKGHRRTYIGAMPGKMVQCLKNVGT----- 570 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~----~~~l~g~~~~~vG~~~~~i~~~l~~~~~----- 570 (691)
.+..|+++++.|-+|||||||+|+|.+...++.|.|.+.|..- ..++...++..+++++|++......+..
T Consensus 50 ~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f 129 (386)
T COG4175 50 DVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129 (386)
T ss_pred eecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence 6789999999999999999999999999999999999887531 2334444455566666654332222222
Q ss_pred ----------------------------------------------------cCCEEEehhhhhhcccCCCCHHHHHHhh
Q 005548 571 ----------------------------------------------------ANPLVLIDEIDKLGRGHAGDPASALLEL 598 (691)
Q Consensus 571 ----------------------------------------------------~~~VlllDEidkl~~~~~~~~~~~LL~~ 598 (691)
.++|+++||. ++.
T Consensus 130 GLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEa---------------FSA 194 (386)
T COG4175 130 GLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEA---------------FSA 194 (386)
T ss_pred ceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCc---------------hhh
Confidence 2235555554 245
Q ss_pred cCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 599 LDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 599 LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
|||.......|.++++...++++++++|+...+.+ .+-+|+.++
T Consensus 195 LDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAl--riG~rIaim 238 (386)
T COG4175 195 LDPLIRTEMQDELLELQAKLKKTIVFITHDLDEAL--RIGDRIAIM 238 (386)
T ss_pred cChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHH--hccceEEEe
Confidence 78887788888887777677777766664332222 245888665
No 346
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.60 E-value=1.4e-07 Score=94.65 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 70 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGI 70 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCE
Confidence 57899999999999999999999999999888899988774
No 347
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=9.7e-08 Score=98.25 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDE 65 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 56799999999999999999999999999888999988774
No 348
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.60 E-value=2.4e-08 Score=102.78 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 64 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGT 64 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCe
Confidence 57899999999999999999999999999888999988774
No 349
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.59 E-value=1.1e-07 Score=102.32 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=86.4
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC---eEEEEeCccchhh-----hhhcccCcccccccchHH---
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRK---FFRFSVGGLADVA-----EIKGHRRTYIGAMPGKMV--- 562 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~---~~~i~~~~~~~~~-----~l~g~~~~~vG~~~~~i~--- 562 (691)
+.+++ .+.+|+.++|+|+||+|||||+++|++.+.+. .|+|.+.|.. +. ++...+...+++++|...
T Consensus 32 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~-i~~~~~~~~~~~r~~~i~~v~Q~~~~~l 110 (330)
T PRK09473 32 VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE-ILNLPEKELNKLRAEQISMIFQDPMTSL 110 (330)
T ss_pred EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE-CCcCCHHHHHHHhcCCEEEEEcCchhhc
Confidence 34444 57899999999999999999999999999775 8999888742 21 111112235677766531
Q ss_pred -------HHHHHhc-ccCC---------------EEEehh----hhhhcccCCCC------HHHHHH------------h
Q 005548 563 -------QCLKNVG-TANP---------------LVLIDE----IDKLGRGHAGD------PASALL------------E 597 (691)
Q Consensus 563 -------~~l~~~~-~~~~---------------VlllDE----idkl~~~~~~~------~~~~LL------------~ 597 (691)
..+.... ...+ .+=+++ +++.....+++ .+.+|. .
T Consensus 111 ~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts 190 (330)
T PRK09473 111 NPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTT 190 (330)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 1110000 0000 000111 01111222332 223333 4
Q ss_pred hcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 598 LLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 598 ~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.||......+.+.+..+..+ .+..+|++||+...+ ..++||+.++
T Consensus 191 ~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~-~~~~Dri~vm 235 (330)
T PRK09473 191 ALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVV-AGICDKVLVM 235 (330)
T ss_pred cCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHH-HHhCCEEEEE
Confidence 88888888888877766433 356677788887765 5678999766
No 350
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=1.5e-07 Score=93.43 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=35.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh--cCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARAL--NRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l--~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.. .+..+++.+.+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~ 71 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR 71 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCE
Confidence 56789999999999999999999999864 367788887663
No 351
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=1.4e-07 Score=97.66 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=36.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 5679999999999999999999999999863 4888888774
No 352
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.1e-07 Score=102.23 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=59.4
Q ss_pred CEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEEEEcCCCHH
Q 005548 573 PLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVIAIAGYITD 652 (691)
Q Consensus 573 ~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI~~~~~~~~ 652 (691)
.|++||++|++.. ..+++||..|+. ...+++||++|+.++.+.+.+++||..+.|.+++.+
T Consensus 134 kV~iI~~ae~m~~----~AaNaLLKtLEE---------------Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~ 194 (342)
T PRK06964 134 RVVVLYPAEALNV----AAANALLKTLEE---------------PPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPE 194 (342)
T ss_pred eEEEEechhhcCH----HHHHHHHHHhcC---------------CCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHH
Confidence 3999999999964 568899988875 457899999999999999999999999999999998
Q ss_pred HHHHHHHH
Q 005548 653 EKMHIARD 660 (691)
Q Consensus 653 e~~~I~~~ 660 (691)
+..+.+..
T Consensus 195 ~~~~~L~~ 202 (342)
T PRK06964 195 AAAAWLAA 202 (342)
T ss_pred HHHHHHHH
Confidence 88777654
No 353
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=6.8e-08 Score=102.94 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=38.6
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|.|.+.+
T Consensus 24 ~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g 68 (305)
T PRK13651 24 DNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIF 68 (305)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEec
Confidence 3444 5779999999999999999999999999998899988865
No 354
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=1.6e-07 Score=95.86 Aligned_cols=41 Identities=24% Similarity=0.489 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.+.
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGI 65 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 57799999999999999999999999999888899988774
No 355
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.59 E-value=3.4e-07 Score=103.33 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=90.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHHHHHHHh-----cccCCE
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNV-----GTANPL 574 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~-----~~~~~V 574 (691)
.-++.++++|+||||.||||||..||+..|....+|+.+.-..... ...++..+.... ..++..
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~-----------v~~kI~~avq~~s~l~adsrP~C 390 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPM-----------VKEKIENAVQNHSVLDADSRPVC 390 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHH-----------HHHHHHHHHhhccccccCCCcce
Confidence 4567788999999999999999999999999999998876432221 122333333221 223338
Q ss_pred EEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh------ccccccCCceEEEEEeCCCCCCChhhcC---eEEEEE
Q 005548 575 VLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY------LDVPIDLSKVLFVCTANVVENIPNPLLD---RMEVIA 645 (691)
Q Consensus 575 lllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~------~~~~~~~~~vi~I~TsN~~~~l~~aLld---R~~iI~ 645 (691)
+++||||...+ ..++.++..+...........- +......=..-|||.+|.... |+|.. -..+|.
T Consensus 391 LViDEIDGa~~----~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~ 464 (877)
T KOG1969|consen 391 LVIDEIDGAPR----AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIA 464 (877)
T ss_pred EEEecccCCcH----HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEE
Confidence 89999997753 3355666555421111000000 000000001347788888764 44433 346789
Q ss_pred EcCCCHHHHHHHHHHHHhHH
Q 005548 646 IAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 646 ~~~~~~~e~~~I~~~~l~~~ 665 (691)
|.+++....++-++..+.++
T Consensus 465 f~~p~~s~Lv~RL~~IC~rE 484 (877)
T KOG1969|consen 465 FVPPSQSRLVERLNEICHRE 484 (877)
T ss_pred ecCCChhHHHHHHHHHHhhh
Confidence 99999888887777766653
No 356
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=1.4e-07 Score=96.64 Aligned_cols=41 Identities=32% Similarity=0.414 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~ 62 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGK 62 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 46799999999999999999999999999988999988764
No 357
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.59 E-value=4.3e-07 Score=94.11 Aligned_cols=153 Identities=25% Similarity=0.318 Sum_probs=87.1
Q ss_pred hcCCCCCCCCchhhhHHHHhhhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCe
Q 005548 453 LTALPWGNYSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKF 532 (691)
Q Consensus 453 ~~~lp~~~~~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~ 532 (691)
.+.+|.. .+.+.+|+.- .+. +..++...+..+.. .++++.+++|+||||+|||+|+-||+..+....
T Consensus 67 ~a~~p~~-k~~~~~d~~~-~~~------~~~~~l~~~~~~~~-----~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g 133 (254)
T COG1484 67 SASFPAK-KTFEEFDFEF-QPG------IDKKALEDLASLVE-----FFERGENLVLLGPPGVGKTHLAIAIGNELLKAG 133 (254)
T ss_pred HhcCCcc-CCcccccccC-Ccc------hhHHHHHHHHHHHH-----HhccCCcEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 5677876 4666666642 111 11222222322221 234789999999999999999999999987444
Q ss_pred EEEEeCccch-hhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhh
Q 005548 533 FRFSVGGLAD-VAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 533 ~~i~~~~~~~-~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~ 611 (691)
.++.+-...+ +.++...... +.....+......-++++|||+.....+ ....+.++++++.. +
T Consensus 134 ~sv~f~~~~el~~~Lk~~~~~------~~~~~~l~~~l~~~dlLIiDDlG~~~~~--~~~~~~~~q~I~~r--------~ 197 (254)
T COG1484 134 ISVLFITAPDLLSKLKAAFDE------GRLEEKLLRELKKVDLLIIDDIGYEPFS--QEEADLLFQLISRR--------Y 197 (254)
T ss_pred CeEEEEEHHHHHHHHHHHHhc------CchHHHHHHHhhcCCEEEEecccCccCC--HHHHHHHHHHHHHH--------H
Confidence 5555544443 3344332111 2222233333344569999999886532 22456666655531 1
Q ss_pred ccccccCCceEEEEEeCCCCC----------CChhhcCeE
Q 005548 612 LDVPIDLSKVLFVCTANVVEN----------IPNPLLDRM 641 (691)
Q Consensus 612 ~~~~~~~~~vi~I~TsN~~~~----------l~~aLldR~ 641 (691)
..... ++|||.... ..++++||+
T Consensus 198 ------~~~~~-~~tsN~~~~~~~~~~~~~~~~e~~~dRi 230 (254)
T COG1484 198 ------ESRSL-IITSNLSFGEWDELFGDDALTEALLDRI 230 (254)
T ss_pred ------hhccc-eeecCCChHHHHhhccCchhHHHHHHHH
Confidence 02233 889997632 236677766
No 358
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.59 E-value=5.9e-08 Score=123.68 Aligned_cols=162 Identities=20% Similarity=0.225 Sum_probs=95.2
Q ss_pred ccchHHHHHHHHH--HHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccc
Q 005548 479 HYGLNDVKERILE--FIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIG 555 (691)
Q Consensus 479 i~Gl~~vk~~i~~--~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG 555 (691)
++-++++.+.+.. ..++.+++ .+++|++++|+||||+|||||+|+|++.+.++.|.|.+.|..-.... ...+..+|
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~-~~~r~~IG 2015 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNI-SDVHQNMG 2015 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchH-HHHhhhEE
Confidence 3334444444432 33455555 78899999999999999999999999999999999999874321111 11123466
Q ss_pred cccchHH--------HHHHHhcccCCE----------EE-----ehh-hhhhcccCCCC------HHHHHH---------
Q 005548 556 AMPGKMV--------QCLKNVGTANPL----------VL-----IDE-IDKLGRGHAGD------PASALL--------- 596 (691)
Q Consensus 556 ~~~~~i~--------~~l~~~~~~~~V----------ll-----lDE-idkl~~~~~~~------~~~~LL--------- 596 (691)
+.+|... ..+.......++ -+ +++ .++.....+++ .+.+|+
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD 2095 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD 2095 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 6665411 111000000000 00 000 11111222222 122222
Q ss_pred ---hhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 597 ---ELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 597 ---~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.+||+.....+.+.+..+.. ++..+|+|||..+.+ ++++||+.++
T Consensus 2096 EPTsGLDp~sr~~l~~lL~~l~~--~g~TIILtTH~mee~-e~lcDrV~IL 2143 (2272)
T TIGR01257 2096 EPTTGMDPQARRMLWNTIVSIIR--EGRAVVLTSHSMEEC-EALCTRLAIM 2143 (2272)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 47899888888887776542 356788899998877 7889998665
No 359
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.58 E-value=1.6e-07 Score=101.02 Aligned_cols=178 Identities=19% Similarity=0.197 Sum_probs=105.3
Q ss_pred hhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEe----Cccc-----hhh
Q 005548 474 ILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSV----GGLA-----DVA 544 (691)
Q Consensus 474 ~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~----~~~~-----~~~ 544 (691)
.++..++|++.++..+.-...- +.=..+++.|+.|+||||++|+|+.+|..-...+.| .-.. +.-
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c 87 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDEC 87 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHH
Confidence 3456789999999888666432 233569999999999999999999999643322211 0000 000
Q ss_pred -------hhhcccCcc-------cccccchH------HHHHH----------HhcccCCEEEehhhhhhcccCCCCHHHH
Q 005548 545 -------EIKGHRRTY-------IGAMPGKM------VQCLK----------NVGTANPLVLIDEIDKLGRGHAGDPASA 594 (691)
Q Consensus 545 -------~l~g~~~~~-------vG~~~~~i------~~~l~----------~~~~~~~VlllDEidkl~~~~~~~~~~~ 594 (691)
++......| +|.+..++ ..++. .+..+.+|+++||++.+. ...++.
T Consensus 88 ~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~----d~lvd~ 163 (423)
T COG1239 88 RAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD----DHLVDA 163 (423)
T ss_pred HhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc----HHHHHH
Confidence 000000011 11222211 11111 122345699999998774 246788
Q ss_pred HHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC-CCChhhcCeEEE-EEEcC-CCHHHHHHHHHHHHh
Q 005548 595 LLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE-NIPNPLLDRMEV-IAIAG-YITDEKMHIARDYLE 663 (691)
Q Consensus 595 LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~-~l~~aLldR~~i-I~~~~-~~~~e~~~I~~~~l~ 663 (691)
||+.+....+..-.+++. +. ...++++|+|+|..+ .|.+.|+|||.. +...+ .+.+++++|+++-+.
T Consensus 164 LLd~aaeG~n~vereGis-i~-hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 164 LLDVAAEGVNDVEREGIS-IR-HPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HHHHHHhCCceeeeCcee-ec-cCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 888776532222223332 22 135899999999864 488999999975 55544 446778888777543
No 360
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=1.4e-07 Score=96.56 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=37.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~ 63 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQ 63 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCE
Confidence 56799999999999999999999999999888999888764
No 361
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.58 E-value=1.7e-07 Score=95.10 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++|++++|+||||+|||||+++|++.+.+..|+|.+.+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 66 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGV 66 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCE
Confidence 57799999999999999999999999999888899988774
No 362
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=1.1e-07 Score=100.22 Aligned_cols=45 Identities=27% Similarity=0.429 Sum_probs=38.2
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCe---EEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKF---FRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~---~~i~~~~~ 540 (691)
..++ .+.+|++++|+||||+|||||+++|++.+.+.. |.|.+.|.
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~ 72 (282)
T PRK13640 24 NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGI 72 (282)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCE
Confidence 3344 578999999999999999999999999997765 78888774
No 363
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=9e-08 Score=100.56 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=39.8
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 64 (274)
T PRK13644 19 ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGI 64 (274)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 3444 57899999999999999999999999999989999988874
No 364
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.58 E-value=1.4e-07 Score=96.80 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~ 62 (237)
T TIGR00968 22 EVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ 62 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 57799999999999999999999999999888899888774
No 365
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.58 E-value=1.1e-08 Score=99.02 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcc--cCcccccccc
Q 005548 483 NDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGH--RRTYIGAMPG 559 (691)
Q Consensus 483 ~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~--~~~~vG~~~~ 559 (691)
+++.+.+.....+.+++ .+.+|++++|.||||+||||...++.+...++.|.|.+.+. |+..++-+ .+..+||.||
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~-diT~lPm~~RArlGigYLpQ 86 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDE-DITKLPMHKRARLGIGYLPQ 86 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCc-ccccCChHHHhhcCcccccc
Confidence 45666676666666666 78999999999999999999999999999999999999885 44444332 3556888888
Q ss_pred hH
Q 005548 560 KM 561 (691)
Q Consensus 560 ~i 561 (691)
..
T Consensus 87 E~ 88 (243)
T COG1137 87 EA 88 (243)
T ss_pred cc
Confidence 63
No 366
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.58 E-value=6.1e-07 Score=106.19 Aligned_cols=196 Identities=14% Similarity=0.240 Sum_probs=118.4
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhccc
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHR 550 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~ 550 (691)
.+++|.....+.+.+.+... ...+.+++|+|++|||||++|++|..... .++..++|..+.+ ...++|+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~----a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~ 451 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMV----AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHE 451 (686)
T ss_pred cceeecCHHHHHHHHHHHHH----hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcc
Confidence 36788877777776555421 13456899999999999999999998763 5788899887643 23556654
Q ss_pred Cc-ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCC
Q 005548 551 RT-YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV 629 (691)
Q Consensus 551 ~~-~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~ 629 (691)
++ +.|...... ..+.. ..++++||||++.++. +....|+..|+........ . ... ...++.+|+|||.
T Consensus 452 ~~~~~g~~~~~~-g~le~--a~~GtL~Ldei~~L~~----~~Q~~L~~~l~~~~~~~~g-~--~~~-~~~~~RiI~~t~~ 520 (686)
T PRK15429 452 RGAFTGASAQRI-GRFEL--ADKSSLFLDEVGDMPL----ELQPKLLRVLQEQEFERLG-S--NKI-IQTDVRLIAATNR 520 (686)
T ss_pred cccccccccchh-hHHHh--cCCCeEEEechhhCCH----HHHHHHHHHHHhCCEEeCC-C--CCc-ccceEEEEEeCCC
Confidence 33 222222222 22222 2457999999999864 3455666666531100000 0 000 1135778888876
Q ss_pred C-------CCCChhhcCeEEEE--EEcCCCH--HHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 630 V-------ENIPNPLLDRMEVI--AIAGYIT--DEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 630 ~-------~~l~~aLldR~~iI--~~~~~~~--~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
. ..+...|..|+..+ .++++.. ++.-.+++.|+.+... .+|... ..++++++..+.++
T Consensus 521 ~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~-~~~~~~--~~~s~~al~~L~~y 589 (686)
T PRK15429 521 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIAR-RMGRNI--DSIPAETLRTLSNM 589 (686)
T ss_pred CHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHH-HcCCCC--CCcCHHHHHHHHhC
Confidence 3 23555677787654 5555443 4455677777776433 334321 34899999887664
No 367
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.58 E-value=1e-07 Score=98.43 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=107.5
Q ss_pred hhhhccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCc
Q 005548 473 KILDEDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRT 552 (691)
Q Consensus 473 ~~l~~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~ 552 (691)
+....++++++++...+.++... ..-++.+++||||+|||+.+.+.|..+-.+...-+ -+.++......
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~-----m~lelnaSd~r 105 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTS-----MLLELNASDDR 105 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchh-----HHHHhhccCcc
Confidence 33444678888887777777433 33458999999999999999999988865421110 01222222122
Q ss_pred ccccccchHHHHHHHhc--------ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEE
Q 005548 553 YIGAMPGKMVQCLKNVG--------TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFV 624 (691)
Q Consensus 553 ~vG~~~~~i~~~l~~~~--------~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I 624 (691)
.++...+.+. .+..+. ..-.++++||+|.+.+ +..++|-.++. .+ ..++.|+
T Consensus 106 gid~vr~qi~-~fast~~~~~fst~~~fKlvILDEADaMT~----~AQnALRRvie---------k~------t~n~rF~ 165 (360)
T KOG0990|consen 106 GIDPVRQQIH-LFASTQQPTTYSTHAAFKLVILDEADAMTR----DAQNALRRVIE---------KY------TANTRFA 165 (360)
T ss_pred CCcchHHHHH-HHHhhccceeccccCceeEEEecchhHhhH----HHHHHHHHHHH---------Hh------ccceEEE
Confidence 2333333322 222222 1223899999999975 34556554322 12 2578888
Q ss_pred EEeCCCCCCChhhcCeEEEEEEcCCCHHHHHHHHHHHHhHHh
Q 005548 625 CTANVVENIPNPLLDRMEVIAIAGYITDEKMHIARDYLEKTT 666 (691)
Q Consensus 625 ~TsN~~~~l~~aLldR~~iI~~~~~~~~e~~~I~~~~l~~~~ 666 (691)
+.+|.+..+.+++.+||.-+.|.+++..+......+++...+
T Consensus 166 ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred EeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcch
Confidence 999999999999999999999999999888888888776543
No 368
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=9.7e-08 Score=100.59 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=37.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|.+++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 69 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDT 69 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 56799999999999999999999999999999999988774
No 369
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.57 E-value=3.6e-08 Score=107.37 Aligned_cols=159 Identities=16% Similarity=0.256 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch-hhhhhcccCcccccccc
Q 005548 482 LNDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD-VAEIKGHRRTYIGAMPG 559 (691)
Q Consensus 482 l~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~-~~~l~g~~~~~vG~~~~ 559 (691)
+.++.+.|....+..+++ .+.+|++.+|+|.||+|||||+++|.+.+.++.|+|.+.|..- ...-....+..+|++.|
T Consensus 7 ~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQ 86 (501)
T COG3845 7 MRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQ 86 (501)
T ss_pred EeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEee
Confidence 344555555555666666 7889999999999999999999999999999999999988542 11112223556788877
Q ss_pred hHHHHHHHhcccCCEEEehh---------------hhhhcc-------------cCCC------CHHHHHH---------
Q 005548 560 KMVQCLKNVGTANPLVLIDE---------------IDKLGR-------------GHAG------DPASALL--------- 596 (691)
Q Consensus 560 ~i~~~l~~~~~~~~VlllDE---------------idkl~~-------------~~~~------~~~~~LL--------- 596 (691)
++......+...| |++=-| +..+.. +.+- +...+|+
T Consensus 87 HF~Lv~~lTV~EN-iiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILD 165 (501)
T COG3845 87 HFMLVPTLTVAEN-IILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILD 165 (501)
T ss_pred ccccccccchhhh-hhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEc
Confidence 7655444444444 222111 111110 0000 0222333
Q ss_pred ---hhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 597 ---ELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 597 ---~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.+|.|.....++..+..+.. .+..||+.||...++ .+++||+.++
T Consensus 166 EPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev-~~iaDrvTVL 213 (501)
T COG3845 166 EPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEV-MAIADRVTVL 213 (501)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHH-HHhhCeeEEE
Confidence 35666666777666665542 455666677887777 6899999776
No 370
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.57 E-value=5e-08 Score=112.68 Aligned_cols=170 Identities=20% Similarity=0.248 Sum_probs=102.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhcC--CeEEEEeCccchhhhhhcccC-------cccccccchHHHHHHHhcccCCEE
Q 005548 505 KIICLSGPPGVGKTSIGRSIARALNR--KFFRFSVGGLADVAEIKGHRR-------TYIGAMPGKMVQCLKNVGTANPLV 575 (691)
Q Consensus 505 ~~vlL~GPpGtGKTtLakaLA~~l~~--~~~~i~~~~~~~~~~l~g~~~-------~~vG~~~~~i~~~l~~~~~~~~Vl 575 (691)
.+++|.|+||+|||+++++|+..+.. ++.++..+.. ...+.|... +..-..+|- + ....++++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t--~d~L~G~idl~~~~~~g~~~~~~G~----L--~~A~~GvL 88 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVT--EDRLIGGIDVEESLAGGQRVTQPGL----L--DEAPRGVL 88 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccc--hhhcccchhhhhhhhcCcccCCCCC----e--eeCCCCcE
Confidence 57999999999999999999999865 3666654211 122222210 000011111 1 12345699
Q ss_pred EehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC---CCChhhcCeEEE-EEEcC-CC
Q 005548 576 LIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE---NIPNPLLDRMEV-IAIAG-YI 650 (691)
Q Consensus 576 llDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~---~l~~aLldR~~i-I~~~~-~~ 650 (691)
|+||++++.. ..++.|++.|+..+...-.++. ... ...++.+|+|+|..+ .++++|+|||.+ +.+.. ++
T Consensus 89 ~lDEi~rl~~----~~q~~Ll~al~~g~v~i~r~G~-~~~-~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 89 YVDMANLLDD----GLSNRLLQALDEGVVIVEREGI-SVV-HPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS 162 (589)
T ss_pred eccchhhCCH----HHHHHHHHHHHcCCeEEEECCC-cee-ecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC
Confidence 9999999864 5677888887652210000011 011 124678899999865 688999999986 44443 45
Q ss_pred HHHHHHHHHHHHhHH--------------hHHhcCCCCCceeeCHHHHHHhhh
Q 005548 651 TDEKMHIARDYLEKT--------------TREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 651 ~~e~~~I~~~~l~~~--------------~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
.+++.+|++.++... ....... ...+.++++++.+|+.
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~-~~~V~i~~~~~~~l~~ 214 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAAREL-LPQVTISAEQVKELVL 214 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHh-cCCccCCHHHHHHHHH
Confidence 677888888865211 0111111 2347789999888765
No 371
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=1.1e-07 Score=99.82 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=38.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 64 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE
Confidence 57899999999999999999999999999988999998874
No 372
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.57 E-value=1.6e-07 Score=95.19 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=37.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++...+..|++.+.|.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 66 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGT 66 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCE
Confidence 56899999999999999999999999999888898888774
No 373
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.57 E-value=1.7e-07 Score=96.09 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGH 64 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCe
Confidence 56799999999999999999999999999888899988774
No 374
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.57 E-value=9.6e-08 Score=90.14 Aligned_cols=41 Identities=22% Similarity=0.455 Sum_probs=38.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++++||+|||||||.|++|....++.|.+.+.|.
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge 65 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 65 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCc
Confidence 57899999999999999999999999999999999988774
No 375
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=1.1e-07 Score=100.58 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 73 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDY 73 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 57799999999999999999999999999888999988774
No 376
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.56 E-value=1e-07 Score=102.79 Aligned_cols=147 Identities=16% Similarity=0.229 Sum_probs=85.9
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc----ccCcccccccchHHH------
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG----HRRTYIGAMPGKMVQ------ 563 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g----~~~~~vG~~~~~i~~------ 563 (691)
+.+++ .+.+|++++|+|+||+|||||+++|++.+.+..|+|.+.|.. ...+.. ..+..+++++|....
T Consensus 37 l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~-i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~ 115 (331)
T PRK15079 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD-LLGMKDDEWRAVRSDIQMIFQDPLASLNPRM 115 (331)
T ss_pred EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE-CCcCCHHHHHHHhCceEEEecCchhhcCCCC
Confidence 34444 678999999999999999999999999999889999988742 221110 012346666665311
Q ss_pred ----HHHHhc--c---cCC------E-EE-----e-hh-hhhhcccCCCC------HHHHHH------------hhcCHH
Q 005548 564 ----CLKNVG--T---ANP------L-VL-----I-DE-IDKLGRGHAGD------PASALL------------ELLDPE 602 (691)
Q Consensus 564 ----~l~~~~--~---~~~------V-ll-----l-DE-idkl~~~~~~~------~~~~LL------------~~LD~~ 602 (691)
.+.... . ... + -+ + ++ .++.....+++ .+.+|. ..||..
T Consensus 116 tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~ 195 (331)
T PRK15079 116 TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVS 195 (331)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 110000 0 000 0 00 1 11 11222223332 222333 488888
Q ss_pred HHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 603 QNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 603 ~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
....+.+.+..+... .+..+|++||+...+ ..++||+.++
T Consensus 196 ~~~~i~~lL~~l~~~-~~~til~iTHdl~~~-~~~~dri~vl 235 (331)
T PRK15079 196 IQAQVVNLLQQLQRE-MGLSLIFIAHDLAVV-KHISDRVLVM 235 (331)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 888888877765432 255667777777665 5678999766
No 377
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.56 E-value=1.4e-07 Score=96.15 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 72 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQ 72 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCE
Confidence 56799999999999999999999999999889999988764
No 378
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.1e-07 Score=100.10 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=89.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCC--eEEEEeCcc-----------chhhhhhcccC-cccccccchHHH---HHH
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRK--FFRFSVGGL-----------ADVAEIKGHRR-TYIGAMPGKMVQ---CLK 566 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~--~~~i~~~~~-----------~~~~~l~g~~~-~~vG~~~~~i~~---~l~ 566 (691)
++-++|.||+|+||+++|.++|+.+-.. ...-.|+.- .|+..+..... ..++ -..+.. .+.
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~--idqiR~l~~~~~ 101 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG--VDAVREVTEKLY 101 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC--HHHHHHHHHHHh
Confidence 4679999999999999999999998432 111122211 11111110000 1111 111222 222
Q ss_pred Hhcc--cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 567 NVGT--ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 567 ~~~~--~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
.... ...|++||++|++.. ..+++||..|+. +..+++||++|+.++.+.+.+++||..+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~----~AaNaLLKtLEE---------------Pp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTD----AAANALLKTLEE---------------PPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred hccccCCceEEEEcchHhhCH----HHHHHHHHHhcC---------------CCCCeEEEEEECChhhChHHHHhccccc
Confidence 2221 234999999999964 468899999875 4579999999999999989999999999
Q ss_pred EEcCCCHHHHHHHHH
Q 005548 645 AIAGYITDEKMHIAR 659 (691)
Q Consensus 645 ~~~~~~~~e~~~I~~ 659 (691)
.|+.++.++....+.
T Consensus 163 ~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 163 YLAPPPEQYALTWLS 177 (334)
T ss_pred cCCCCCHHHHHHHHH
Confidence 999999887766554
No 379
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.55 E-value=2.1e-07 Score=85.37 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=47.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCC---eEEEEeCccchhhhh-----hcccCcccccccchHHHHHHHhcccC-CE
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRK---FFRFSVGGLADVAEI-----KGHRRTYIGAMPGKMVQCLKNVGTAN-PL 574 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~---~~~i~~~~~~~~~~l-----~g~~~~~vG~~~~~i~~~l~~~~~~~-~V 574 (691)
+.+++|+|||||||||+++.|+..+... ...++.......... ..................+..+.... .+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5789999999999999999999999876 343333222111000 00000111111122233334444333 69
Q ss_pred EEehhhhhhcc
Q 005548 575 VLIDEIDKLGR 585 (691)
Q Consensus 575 lllDEidkl~~ 585 (691)
+++||++.+..
T Consensus 82 iiiDei~~~~~ 92 (148)
T smart00382 82 LILDEITSLLD 92 (148)
T ss_pred EEEECCcccCC
Confidence 99999988863
No 380
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.55 E-value=1.7e-07 Score=97.08 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR 65 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecc
Confidence 56799999999999999999999999999999999988763
No 381
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.55 E-value=2.3e-07 Score=94.45 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 76 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK 76 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCC
Confidence 56799999999999999999999999999988999988774
No 382
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.55 E-value=1.3e-07 Score=95.51 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=33.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEE
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFS 536 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~ 536 (691)
.+++|+.++|+||||+|||||+++|++.+.+..|.+.
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~ 45 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI 45 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence 5789999999999999999999999999887777775
No 383
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.55 E-value=9.6e-07 Score=89.60 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=98.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-cCCeE--EEEeCccc-------------hhhhhhcccCcccccccchHHHHHHH
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARAL-NRKFF--RFSVGGLA-------------DVAEIKGHRRTYIGAMPGKMVQCLKN 567 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l-~~~~~--~i~~~~~~-------------~~~~l~g~~~~~vG~~~~~i~~~l~~ 567 (691)
-++++++||+|+||-|.+.+|-+.+ |.... ++....+. ....+.- .+.-.|+...-+.+-+-+
T Consensus 34 ~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi-tPSDaG~~DRvViQellK 112 (351)
T KOG2035|consen 34 FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI-TPSDAGNYDRVVIQELLK 112 (351)
T ss_pred CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe-ChhhcCcccHHHHHHHHH
Confidence 3789999999999999999998776 32211 11111100 0000000 011233332222222211
Q ss_pred h-----------cccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChh
Q 005548 568 V-----------GTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNP 636 (691)
Q Consensus 568 ~-----------~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~a 636 (691)
. .+.-.+++|-|+|.+.+ |.+.+|-.-++ .| .+++.+|+..|....+-++
T Consensus 113 evAQt~qie~~~qr~fKvvvi~ead~LT~----dAQ~aLRRTME---------kY------s~~~RlIl~cns~SriIep 173 (351)
T KOG2035|consen 113 EVAQTQQIETQGQRPFKVVVINEADELTR----DAQHALRRTME---------KY------SSNCRLILVCNSTSRIIEP 173 (351)
T ss_pred HHHhhcchhhccccceEEEEEechHhhhH----HHHHHHHHHHH---------HH------hcCceEEEEecCcccchhH
Confidence 1 11223899999999975 33445444443 23 2577889999999998899
Q ss_pred hcCeEEEEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhh
Q 005548 637 LLDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFR 689 (691)
Q Consensus 637 LldR~~iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~ 689 (691)
+.+||-+|.++.|+.++...++.+.+.++ .+.+.++.+..|++
T Consensus 174 IrSRCl~iRvpaps~eeI~~vl~~v~~kE----------~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 174 IRSRCLFIRVPAPSDEEITSVLSKVLKKE----------GLQLPKELLKRIAE 216 (351)
T ss_pred HhhheeEEeCCCCCHHHHHHHHHHHHHHh----------cccCcHHHHHHHHH
Confidence 99999999999999999999999988864 24455666665554
No 384
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.55 E-value=1.3e-07 Score=97.81 Aligned_cols=45 Identities=29% Similarity=0.471 Sum_probs=37.4
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+. +.|+|.+.|.
T Consensus 12 l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~ 57 (248)
T PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQ 57 (248)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCE
Confidence 33444 578999999999999999999999999874 5788888764
No 385
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=1.7e-07 Score=94.72 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=36.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+ +.++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 20 ~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 59 (214)
T cd03297 20 DLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59 (214)
T ss_pred EEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 4678 999999999999999999999999888898888763
No 386
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.54 E-value=1.6e-07 Score=96.28 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=37.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 62 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE 62 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCE
Confidence 56799999999999999999999999999888999988774
No 387
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.54 E-value=1.8e-07 Score=97.24 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=37.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 67 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQ 67 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 57899999999999999999999999999888999988874
No 388
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.54 E-value=1.9e-07 Score=92.42 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 54 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGE 54 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCE
Confidence 57899999999999999999999999999988999988774
No 389
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.54 E-value=1.5e-07 Score=96.11 Aligned_cols=136 Identities=22% Similarity=0.293 Sum_probs=81.9
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch-----------hhhh---hc----ccCcccc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD-----------VAEI---KG----HRRTYIG 555 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~-----------~~~l---~g----~~~~~vG 555 (691)
+.+++ .+.+|++++|+|.+||||||++|+|.+...++.|+|.+.|..- +.++ .| +..+|--
T Consensus 29 vd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPh 108 (268)
T COG4608 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPH 108 (268)
T ss_pred ecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCc
Confidence 34444 6789999999999999999999999999999999999987531 1111 11 1122222
Q ss_pred cccchHHH--HHHHhcccCC-EEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCC
Q 005548 556 AMPGKMVQ--CLKNVGTANP-LVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVEN 632 (691)
Q Consensus 556 ~~~~~i~~--~l~~~~~~~~-VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~ 632 (691)
+..|...+ .+..+..-+| +++.||.-.+. |......+++.+.++... .+..+++.||+...
T Consensus 109 elSGGQrQRi~IARALal~P~liV~DEpvSaL---------------DvSiqaqIlnLL~dlq~~-~~lt~lFIsHDL~v 172 (268)
T COG4608 109 ELSGGQRQRIGIARALALNPKLIVADEPVSAL---------------DVSVQAQILNLLKDLQEE-LGLTYLFISHDLSV 172 (268)
T ss_pred ccCchhhhhHHHHHHHhhCCcEEEecCchhhc---------------chhHHHHHHHHHHHHHHH-hCCeEEEEEEEHHh
Confidence 22222222 2223333334 99999976542 322222222222222212 35667777888777
Q ss_pred CChhhcCeEEEEEEc
Q 005548 633 IPNPLLDRMEVIAIA 647 (691)
Q Consensus 633 l~~aLldR~~iI~~~ 647 (691)
+ ..+.||+.+++..
T Consensus 173 v-~~isdri~VMy~G 186 (268)
T COG4608 173 V-RYISDRIAVMYLG 186 (268)
T ss_pred h-hhhcccEEEEecC
Confidence 6 6788998776433
No 390
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.54 E-value=1.6e-07 Score=98.62 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=36.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC--------eEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRK--------FFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~--------~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+. .|+|.+.|.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~ 71 (272)
T PRK13547 23 RIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE 71 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCE
Confidence 56799999999999999999999999998776 788888763
No 391
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=1.7e-07 Score=98.74 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=39.7
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 27 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~ 72 (280)
T PRK13633 27 DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGL 72 (280)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 3344 57899999999999999999999999999999999998874
No 392
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.54 E-value=1e-07 Score=109.37 Aligned_cols=183 Identities=24% Similarity=0.301 Sum_probs=107.9
Q ss_pred HhhhhhccccchHHHHHHHHHHHHhcccc-C------CCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchh
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLR-G------ISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADV 543 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-~------~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~ 543 (691)
+-+++...++|.+++|+.+.=.+- .... . +...-++||+|.||+|||.|.+.+++.+.+..+. +..|.. .
T Consensus 280 l~~SiaPsIyG~e~VKkAilLqLf-gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgkgss-~ 356 (682)
T COG1241 280 LIKSIAPSIYGHEDVKKAILLQLF-GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGKGSS-A 356 (682)
T ss_pred HHHHhcccccCcHHHHHHHHHHhc-CCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE-cccccc-c
Confidence 456677899999999888754442 2222 1 2223479999999999999999999998655442 211111 1
Q ss_pred hhhhcc--cCcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCce
Q 005548 544 AEIKGH--RRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKV 621 (691)
Q Consensus 544 ~~l~g~--~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~v 621 (691)
..+... +....|. ....+-....+.++|.+|||+|++.. ....++++.|+..+......++.. . -..++
T Consensus 357 ~GLTAav~rd~~tge---~~LeaGALVlAD~Gv~cIDEfdKm~~----~dr~aihEaMEQQtIsIaKAGI~a-t-LnARc 427 (682)
T COG1241 357 AGLTAAVVRDKVTGE---WVLEAGALVLADGGVCCIDEFDKMNE----EDRVAIHEAMEQQTISIAKAGITA-T-LNARC 427 (682)
T ss_pred cCceeEEEEccCCCe---EEEeCCEEEEecCCEEEEEeccCCCh----HHHHHHHHHHHhcEeeecccceee-e-cchhh
Confidence 111100 0011121 00011112334677999999999964 345678888776433322222111 1 12467
Q ss_pred EEEEEeCCCC-------------CCChhhcCeEEEE--EEcCCCHHHHHHHHHHHHhHH
Q 005548 622 LFVCTANVVE-------------NIPNPLLDRMEVI--AIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 622 i~I~TsN~~~-------------~l~~aLldR~~iI--~~~~~~~~e~~~I~~~~l~~~ 665 (691)
.+++++|... .++++|++||++| ....++.+.-..++.+.+..+
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 7788888764 2788999999864 455566665666666666655
No 393
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.54 E-value=2.7e-07 Score=94.03 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=37.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+. +..|++.+.|.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~ 72 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCE
Confidence 567999999999999999999999999998 78898888774
No 394
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.53 E-value=2.4e-07 Score=95.72 Aligned_cols=41 Identities=29% Similarity=0.354 Sum_probs=36.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+. +..|+|.+.|.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~ 67 (246)
T PRK14269 24 QIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGK 67 (246)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCE
Confidence 567999999999999999999999999874 46888888774
No 395
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.53 E-value=2e-07 Score=96.58 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=36.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 5779999999999999999999999999875 3788888764
No 396
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.53 E-value=3e-07 Score=91.74 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=37.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGT 62 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE
Confidence 56799999999999999999999999999888898888774
No 397
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.52 E-value=2.1e-07 Score=108.20 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=48.2
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc-ccCcccccccch
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG-HRRTYIGAMPGK 560 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g-~~~~~vG~~~~~ 560 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+.+..|+|.++|.. ..++.. ..+..+++.+|.
T Consensus 359 l~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~-i~~~~~~~~~~~i~~v~Q~ 425 (582)
T PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD-LRDYTLASLRNQVALVSQN 425 (582)
T ss_pred ccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE-hhhcCHHHHHhhceEEccC
Confidence 33444 678999999999999999999999999999999999998853 222211 113345666655
No 398
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.52 E-value=4e-07 Score=91.45 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=34.8
Q ss_pred Hhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEE
Q 005548 494 AVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFS 536 (691)
Q Consensus 494 ~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~ 536 (691)
.+..++ .+++|++..++||||+|||||++.+++...+..+.+.
T Consensus 46 iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~ 89 (257)
T COG1119 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89 (257)
T ss_pred eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCcee
Confidence 344445 5789999999999999999999999999876544444
No 399
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.52 E-value=1.7e-07 Score=98.06 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=39.4
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~ 74 (268)
T PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGE 74 (268)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 3444 57899999999999999999999999999888999988774
No 400
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.52 E-value=5.2e-07 Score=94.20 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=36.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|.+.+.+
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g 85 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG 85 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 5789999999999999999999999999988888877655
No 401
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.52 E-value=3e-07 Score=93.29 Aligned_cols=41 Identities=32% Similarity=0.413 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 27 ~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~ 67 (220)
T TIGR02982 27 EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQ 67 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 46789999999999999999999999999888999988774
No 402
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.52 E-value=2.9e-07 Score=95.39 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=35.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++... +..|+|.+.|.
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGE 73 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCE
Confidence 578999999999999999999999999865 35788888774
No 403
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.52 E-value=2.1e-07 Score=110.82 Aligned_cols=154 Identities=25% Similarity=0.367 Sum_probs=103.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCc-ccccccchHHHHHHHhcccCCEEEehhhhh
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRT-YIGAMPGKMVQCLKNVGTANPLVLIDEIDK 582 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~-~vG~~~~~i~~~l~~~~~~~~VlllDEidk 582 (691)
+++++|-|.||+|||+|+.+||+..|....+|++++..+..++.|.--. .-|..+...-.-+..+.+...-+++||+.-
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence 7789999999999999999999999999999999999988888775311 111111111223444556667999999987
Q ss_pred hcccCCCCHHHHHHhhcCHHHHHHHHHhh-ccccccCCceEEEEEeCCCC------CCChhhcCeEEEEEEcCCCHHHHH
Q 005548 583 LGRGHAGDPASALLELLDPEQNANFLDHY-LDVPIDLSKVLFVCTANVVE------NIPNPLLDRMEVIAIAGYITDEKM 655 (691)
Q Consensus 583 l~~~~~~~~~~~LL~~LD~~~~~~~~d~~-~~~~~~~~~vi~I~TsN~~~------~l~~aLldR~~iI~~~~~~~~e~~ 655 (691)
++. .+..-|-..||-.. ..+...+ ..+. -..+..+.+|-|.-+ .+|..|++||.++.+.+++.++..
T Consensus 1623 aSQ----SVlEGLNacLDhR~-eayIPEld~~f~-~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~ 1696 (4600)
T COG5271 1623 ASQ----SVLEGLNACLDHRR-EAYIPELDKTFD-VHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDIT 1696 (4600)
T ss_pred hHH----HHHHHHHHHHhhcc-ccccccccceee-ccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccccchHH
Confidence 642 12222222333211 1111111 0111 125777888888643 489999999999999999999999
Q ss_pred HHHHHHHh
Q 005548 656 HIARDYLE 663 (691)
Q Consensus 656 ~I~~~~l~ 663 (691)
.|+.+...
T Consensus 1697 ~Ia~~~yp 1704 (4600)
T COG5271 1697 HIANKMYP 1704 (4600)
T ss_pred HHHHhhCC
Confidence 98887554
No 404
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=6.3e-08 Score=100.80 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=38.0
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 28 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~ 79 (259)
T PRK14274 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGS 79 (259)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCE
Confidence 34444 5789999999999999999999999999862 3788888774
No 405
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.52 E-value=1.5e-07 Score=107.49 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=39.8
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 27 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 73 (510)
T PRK15439 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN 73 (510)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 33444 57899999999999999999999999999888999988763
No 406
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1e-06 Score=95.86 Aligned_cols=184 Identities=18% Similarity=0.203 Sum_probs=107.9
Q ss_pred ccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC-----eEEEEeCccchhhhhhcccC--
Q 005548 479 HYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRK-----FFRFSVGGLADVAEIKGHRR-- 551 (691)
Q Consensus 479 i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~-----~~~i~~~~~~~~~~l~g~~~-- 551 (691)
+.+-+...+++..++.-. ++ -..+.+++++||||||||.+++-+++.+... ...|+|........+....-
T Consensus 19 l~~Re~ei~~l~~~l~~~-~~-~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 19 LPHREEEINQLASFLAPA-LR-GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccHHHHHHHHHHHHHH-hc-CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 334444444444443311 11 2344569999999999999999999998544 67788866554322211110
Q ss_pred ----cccccccchHHHHHHHhcc---cCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEE
Q 005548 552 ----TYIGAMPGKMVQCLKNVGT---ANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFV 624 (691)
Q Consensus 552 ----~~vG~~~~~i~~~l~~~~~---~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I 624 (691)
...|.........+..... ..-|+++||+|.+..... ..|++.+-.. +.. ..++.+|
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----~~LY~L~r~~------~~~------~~~v~vi 160 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----EVLYSLLRAP------GEN------KVKVSII 160 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----hHHHHHHhhc------ccc------ceeEEEE
Confidence 1122222222222222222 223899999999975422 3333333210 000 2578899
Q ss_pred EEeCCCC---CCChhhcCeEE--EEEEcCCCHHHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhh
Q 005548 625 CTANVVE---NIPNPLLDRME--VIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIF 688 (691)
Q Consensus 625 ~TsN~~~---~l~~aLldR~~--iI~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii 688 (691)
+.+|... .+++.+.+++. -|.|++|+.+|...|+....... +.+ -.+++.++..+.
T Consensus 161 ~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~------~~~--~~~~~~vl~lia 221 (366)
T COG1474 161 AVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG------FSA--GVIDDDVLKLIA 221 (366)
T ss_pred EEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh------ccC--CCcCccHHHHHH
Confidence 9999864 46666777774 38999999999999999877642 222 236666666554
No 407
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.52 E-value=3.4e-07 Score=93.13 Aligned_cols=40 Identities=30% Similarity=0.455 Sum_probs=36.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 501 ISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 501 ~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 42 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA 42 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc
Confidence 4689999999999999999999999999888999988874
No 408
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.51 E-value=2.6e-07 Score=90.38 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=66.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch--------------hhhhhc---c-cCcccccccchH
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD--------------VAEIKG---H-RRTYIGAMPGKM 561 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~--------------~~~l~g---~-~~~~vG~~~~~i 561 (691)
.+.+|+.++|+||||+|||||++++.. ..+.+.+.+... .....+ . .....+...+..
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHH
Confidence 578999999999999999999999863 233333332210 000011 0 111122222211
Q ss_pred H--HHHHHhcc-c--CCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChh
Q 005548 562 V--QCLKNVGT-A--NPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNP 636 (691)
Q Consensus 562 ~--~~l~~~~~-~--~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~a 636 (691)
. ..+..+.. . +.++++||... .||+.....+.+.+..+. + .+..+|++||..+.+ .
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~---------------~LD~~~~~~l~~~l~~~~-~-~g~tvIivSH~~~~~--~ 153 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPST---------------GLHQQDINQLLEVIKGLI-D-LGNTVILIEHNLDVL--S 153 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcc---------------cCCHHHHHHHHHHHHHHH-h-CCCEEEEEeCCHHHH--H
Confidence 1 12222222 3 45999999733 356655555555554432 2 345566677776655 3
Q ss_pred hcCeEEEE
Q 005548 637 LLDRMEVI 644 (691)
Q Consensus 637 LldR~~iI 644 (691)
++||+.++
T Consensus 154 ~~d~i~~l 161 (176)
T cd03238 154 SADWIIDF 161 (176)
T ss_pred hCCEEEEE
Confidence 67887655
No 409
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.51 E-value=3.1e-07 Score=104.40 Aligned_cols=175 Identities=17% Similarity=0.285 Sum_probs=106.5
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHH-----------hcCCeEEEEeCccch---
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARA-----------LNRKFFRFSVGGLAD--- 542 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~-----------l~~~~~~i~~~~~~~--- 542 (691)
++++|.....+.+.+.+... ...+.+++|.|++||||+++|++|... .+.+++.++|+.+.+
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~----A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~ll 294 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLY----ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLL 294 (538)
T ss_pred hheeeCCHHHHHHHHHHHHH----hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhH
Confidence 36788877777766655321 134578999999999999999999987 346899999988754
Q ss_pred hhhhhcccCc-ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCce
Q 005548 543 VAEIKGHRRT-YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKV 621 (691)
Q Consensus 543 ~~~l~g~~~~-~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~v 621 (691)
..+++|+..+ +.|...+.-...+.. ..++.+|||||+.++. ..+..|+..|+......+.. .... .-++
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~--A~gGTLfLdeI~~Lp~----~~Q~kLl~~L~e~~~~r~G~-~~~~---~~dv 364 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEI--AHGGTLFLDEIGEMPL----PLQTRLLRVLEEKEVTRVGG-HQPV---PVDV 364 (538)
T ss_pred HHHhcCCccccccCccccccCCchhc--cCCCEEEEcChHhCCH----HHHHHHHhhhhcCeEEecCC-Ccee---ccce
Confidence 3456665433 222211100112222 2466999999999864 34567777765421111000 0011 1346
Q ss_pred EEEEEeCCC-------CCCChhhcCeEEEE--EEcCCCH--HHHHHHHHHHHhHH
Q 005548 622 LFVCTANVV-------ENIPNPLLDRMEVI--AIAGYIT--DEKMHIARDYLEKT 665 (691)
Q Consensus 622 i~I~TsN~~-------~~l~~aLldR~~iI--~~~~~~~--~e~~~I~~~~l~~~ 665 (691)
.+|++||.. ..+.+.|..|+..+ .++++.. ++...++..|+.+.
T Consensus 365 RiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~ 419 (538)
T PRK15424 365 RVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQS 419 (538)
T ss_pred EEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHH
Confidence 788888754 22555677788654 5555443 45567777777763
No 410
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.51 E-value=2.7e-07 Score=92.21 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=37.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++...+..|++.+.|.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~ 63 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ 63 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCC
Confidence 56799999999999999999999999999999999988774
No 411
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=2.6e-07 Score=94.82 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=39.3
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|.+.+.|.
T Consensus 16 ~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~ 61 (235)
T cd03299 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK 61 (235)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE
Confidence 3344 56799999999999999999999999999999999988774
No 412
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.51 E-value=3.8e-07 Score=91.35 Aligned_cols=40 Identities=28% Similarity=0.498 Sum_probs=36.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
.+++|+.++|+||||+|||||+++|++...+..|+|.+.|
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g 66 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG 66 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC
Confidence 5789999999999999999999999999988888877654
No 413
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=3.1e-07 Score=104.31 Aligned_cols=47 Identities=28% Similarity=0.512 Sum_probs=41.9
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA 541 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~ 541 (691)
+.+++ .+++|+.++|+||+|+||||++..|-+++.+..|+|.++|..
T Consensus 484 lk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~ 531 (716)
T KOG0058|consen 484 LKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVP 531 (716)
T ss_pred hcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCee
Confidence 34444 688999999999999999999999999999999999998854
No 414
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.50 E-value=2.9e-07 Score=95.06 Aligned_cols=41 Identities=27% Similarity=0.416 Sum_probs=37.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC-----eEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRK-----FFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~-----~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+. .|+|.+.|.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 57899999999999999999999999999876 899988774
No 415
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=3.2e-07 Score=96.15 Aligned_cols=41 Identities=34% Similarity=0.519 Sum_probs=36.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+. +..|+|.+.|.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~ 80 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGT 80 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 578999999999999999999999999875 36788888764
No 416
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.50 E-value=2.1e-07 Score=105.84 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=38.2
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|.|.+.+
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~ 64 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQF 64 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECC
Confidence 3444 5789999999999999999999999999988888888755
No 417
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.7e-07 Score=86.73 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=37.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
.+..|+.+-+.||||+|||||.|.||+.+.+..|+|.+.+
T Consensus 24 ~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~ 63 (209)
T COG4133 24 TLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63 (209)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC
Confidence 5678999999999999999999999999999999998875
No 418
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=2.3e-07 Score=97.55 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=39.7
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 69 (277)
T PRK13642 24 NGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGE 69 (277)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence 3444 56899999999999999999999999999999999988774
No 419
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.49 E-value=1.2e-06 Score=100.18 Aligned_cols=196 Identities=16% Similarity=0.250 Sum_probs=116.2
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhccc
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHR 550 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~ 550 (691)
++++|.....+.+.+.+... ...+.+++|+|++||||+++|++|..... .++..++|..+.+ ..+++|+.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~----A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~ 279 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKL----AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHA 279 (520)
T ss_pred cceeECCHHHHHHHHHHHHH----hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCC
Confidence 46777776555554444311 12456799999999999999999977653 5689999988754 23455543
Q ss_pred Cc-ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCC
Q 005548 551 RT-YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV 629 (691)
Q Consensus 551 ~~-~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~ 629 (691)
.+ +.|...++. ..+.. ..++.+||||++.++. .....|++.+........... ... ..++.||+||+.
T Consensus 280 ~~~~~~~~~~~~-g~~e~--a~~GtL~LdeI~~L~~----~~Q~~Ll~~l~~~~~~~~g~~-~~~---~~~vRiI~st~~ 348 (520)
T PRK10820 280 PGAYPNALEGKK-GFFEQ--ANGGSVLLDEIGEMSP----RMQAKLLRFLNDGTFRRVGED-HEV---HVDVRVICATQK 348 (520)
T ss_pred CCCcCCcccCCC-Chhhh--cCCCEEEEeChhhCCH----HHHHHHHHHHhcCCcccCCCC-cce---eeeeEEEEecCC
Confidence 32 222211111 11222 2356999999999864 344566666643111100000 001 135678887765
Q ss_pred C-------CCCChhhcCeEEE--EEEcCCCH--HHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 630 V-------ENIPNPLLDRMEV--IAIAGYIT--DEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 630 ~-------~~l~~aLldR~~i--I~~~~~~~--~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
. ..+.+.|..|+.+ |.++++.. ++...++..|+.+... ..|.. ...++++++..|.++
T Consensus 349 ~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~-~~g~~--~~~ls~~a~~~L~~y 417 (520)
T PRK10820 349 NLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFAD-EQGVP--RPKLAADLNTVLTRY 417 (520)
T ss_pred CHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHH-HcCCC--CCCcCHHHHHHHhcC
Confidence 3 2355678888765 55666554 4456677777776433 34443 245899999988764
No 420
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.49 E-value=3.3e-07 Score=96.18 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=38.6
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|+.++|+||+|+|||||+++|++.+. ..|+|.+.|.
T Consensus 21 ~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~ 65 (275)
T cd03289 21 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGV 65 (275)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE
Confidence 3444 678999999999999999999999999997 7799998885
No 421
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.49 E-value=3.1e-07 Score=95.39 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=38.4
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC----CeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNR----KFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~----~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 3344 5789999999999999999999999999887 7788888764
No 422
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.49 E-value=5.2e-07 Score=89.81 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|.+.+.|.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC 62 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCc
Confidence 56799999999999999999999999999999999888774
No 423
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=3.2e-07 Score=95.54 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=36.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+. +..|+|.+.|.
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~ 80 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGE 80 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCE
Confidence 578999999999999999999999999985 35788888774
No 424
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.4e-06 Score=98.05 Aligned_cols=150 Identities=18% Similarity=0.280 Sum_probs=95.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC----eEEEEeCccchhhhhhcccCcccccccchHHHHHHHhcccCC-E
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRK----FFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-L 574 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~----~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-V 574 (691)
.+....+++|.||+|+|||.|+++|+.++..+ +..++|..+.. ..+......+...+..+....| |
T Consensus 427 pv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~---------~~~e~iQk~l~~vfse~~~~~PSi 497 (952)
T KOG0735|consen 427 PVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG---------SSLEKIQKFLNNVFSEALWYAPSI 497 (952)
T ss_pred cccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc---------hhHHHHHHHHHHHHHHHHhhCCcE
Confidence 35567789999999999999999999998644 22334443321 1111112223345555555555 9
Q ss_pred EEehhhhhhcccC--CC---CHHHHHHh-hcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcC--eEE-EEE
Q 005548 575 VLIDEIDKLGRGH--AG---DPASALLE-LLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLD--RME-VIA 645 (691)
Q Consensus 575 lllDEidkl~~~~--~~---~~~~~LL~-~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLld--R~~-iI~ 645 (691)
+++|.+|.+..+. .+ +.....+. .+ ....+.|.. +.+.+.||+|.+....+++-|.+ +|. ++.
T Consensus 498 IvLDdld~l~~~s~~e~~q~~~~~~rla~fl-----nqvi~~y~~---~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 498 IVLDDLDCLASASSNENGQDGVVSERLAAFL-----NQVIKIYLK---RNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred EEEcchhhhhccCcccCCcchHHHHHHHHHH-----HHHHHHHHc---cCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 9999999887411 11 12222221 11 111222222 23457899999999999877665 565 479
Q ss_pred EcCCCHHHHHHHHHHHHhHHh
Q 005548 646 IAGYITDEKMHIARDYLEKTT 666 (691)
Q Consensus 646 ~~~~~~~e~~~I~~~~l~~~~ 666 (691)
++.|...+|.+|+..++.+..
T Consensus 570 L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred cCCcchhHHHHHHHHHHHhhh
Confidence 999999999999999988765
No 425
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=3.6e-07 Score=94.82 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=36.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 74 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGK 74 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCE
Confidence 5779999999999999999999999999875 3788888764
No 426
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=3.7e-07 Score=94.37 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=35.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+ ..|.+.+.|.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE 70 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 5789999999999999999999999998864 3788888764
No 427
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.48 E-value=4.2e-07 Score=95.38 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=39.4
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (272)
T PRK15056 24 RDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ 69 (272)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 3444 57799999999999999999999999999888999988774
No 428
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.48 E-value=3.4e-07 Score=101.74 Aligned_cols=185 Identities=19% Similarity=0.284 Sum_probs=114.5
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHhcccc-------CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD 542 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~l~~~~-------~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~ 542 (691)
.+-.++...|||.+.+|..+.-.+- .+.. .+...-++|++|.||+|||-++++.++++.+..+. .+....
T Consensus 338 ~lv~Sl~PsIyGhe~VK~GilL~Lf-GGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt--sGkaSS 414 (764)
T KOG0480|consen 338 NLVNSLFPSIYGHELVKAGILLSLF-GGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT--SGKASS 414 (764)
T ss_pred HHHHhhCccccchHHHHhhHHHHHh-CCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe--cCcccc
Confidence 3556778899999999988754442 2221 23344579999999999999999999998765542 121111
Q ss_pred hhhhhccc-CcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCce
Q 005548 543 VAEIKGHR-RTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKV 621 (691)
Q Consensus 543 ~~~l~g~~-~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~v 621 (691)
-+.+.... +.. ........+-......|+|..|||+||+.-. -..++++.|+..... +...-.....+ .++
T Consensus 415 aAGLTaaVvkD~--esgdf~iEAGALmLADnGICCIDEFDKMd~~----dqvAihEAMEQQtIS-IaKAGv~aTLn-ARt 486 (764)
T KOG0480|consen 415 AAGLTAAVVKDE--ESGDFTIEAGALMLADNGICCIDEFDKMDVK----DQVAIHEAMEQQTIS-IAKAGVVATLN-ART 486 (764)
T ss_pred cccceEEEEecC--CCCceeeecCcEEEccCceEEechhcccChH----hHHHHHHHHHhheeh-heecceEEeec-chh
Confidence 11111000 000 0000111122233456789999999999531 256888888763322 22222121212 467
Q ss_pred EEEEEeCCCC-------------CCChhhcCeEEE--EEEcCCCHHHHHHHHHHHHhHH
Q 005548 622 LFVCTANVVE-------------NIPNPLLDRMEV--IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 622 i~I~TsN~~~-------------~l~~aLldR~~i--I~~~~~~~~e~~~I~~~~l~~~ 665 (691)
.|++++|+.. .+++++++||+. |.+..++...-.+|.++.+..+
T Consensus 487 SIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h 545 (764)
T KOG0480|consen 487 SILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLH 545 (764)
T ss_pred hhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence 7888888763 278899999984 6788888888888888887764
No 429
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=3.4e-07 Score=98.72 Aligned_cols=147 Identities=14% Similarity=0.194 Sum_probs=85.8
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhc----CCeEEEEeCccchhhh-----hhcccCcccccccchHHH-
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALN----RKFFRFSVGGLADVAE-----IKGHRRTYIGAMPGKMVQ- 563 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~----~~~~~i~~~~~~~~~~-----l~g~~~~~vG~~~~~i~~- 563 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+. +..|+|.+.|.. +.. ....++..+|+++|....
T Consensus 23 l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~-i~~~~~~~~~~~~~~~i~~v~Q~~~~~ 101 (330)
T PRK15093 23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID-LLRLSPRERRKLVGHNVSMIFQEPQSC 101 (330)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE-CCcCCHHHHHHHhCCCEEEEecCcchh
Confidence 34444 678999999999999999999999999985 467888887742 211 111122356666665321
Q ss_pred ---------HHHHhcc---cCCE-------------EE-----ehh----hhhhcccCCCC------HHHHHH-------
Q 005548 564 ---------CLKNVGT---ANPL-------------VL-----IDE----IDKLGRGHAGD------PASALL------- 596 (691)
Q Consensus 564 ---------~l~~~~~---~~~V-------------ll-----lDE----idkl~~~~~~~------~~~~LL------- 596 (691)
.+..... .... -+ |++ .++.....+++ .+.+|+
T Consensus 102 l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli 181 (330)
T PRK15093 102 LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLI 181 (330)
T ss_pred cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 1110000 0000 00 110 01111223332 223333
Q ss_pred -----hhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 597 -----ELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 597 -----~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
..||......+.+.+..+..+ .+..+|++||....+ ..++||+.++
T Consensus 182 lDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v-~~~~dri~vm 232 (330)
T PRK15093 182 ADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQML-SQWADKINVL 232 (330)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHH-HHhCCEEEEE
Confidence 588888888888887766422 356777788887766 5688999766
No 430
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.48 E-value=4.9e-07 Score=90.85 Aligned_cols=41 Identities=32% Similarity=0.449 Sum_probs=37.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++...+..|+|.+.|.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 64 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGG 64 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 56899999999999999999999999999888899988774
No 431
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.48 E-value=3.3e-07 Score=105.28 Aligned_cols=65 Identities=17% Similarity=0.351 Sum_probs=49.2
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccch
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGK 560 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~ 560 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+.+..|+|.++|. +..++....+..+|+++|.
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~-~i~~~~~~lr~~i~~V~Q~ 416 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGV-SVSSLQDELRRRISVFAQD 416 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE-EhhhHHHHHHhheEEEccC
Confidence 44445 67899999999999999999999999999999999999884 3333222223445555555
No 432
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.48 E-value=2.8e-07 Score=93.74 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=36.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVG 538 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~ 538 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|.|.+.
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 68 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVR 68 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEe
Confidence 567999999999999999999999999998888988885
No 433
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=4.1e-07 Score=94.90 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=36.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~ 75 (261)
T PRK14263 30 PIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQ 75 (261)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCE
Confidence 5789999999999999999999999999865 5788888774
No 434
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=4.9e-07 Score=96.94 Aligned_cols=137 Identities=20% Similarity=0.261 Sum_probs=81.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCCeE---EEEeCcc-----------chhhhhhcccC-cccc-----cccchHHH
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRKFF---RFSVGGL-----------ADVAEIKGHRR-TYIG-----AMPGKMVQ 563 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~~~---~i~~~~~-----------~~~~~l~g~~~-~~vG-----~~~~~i~~ 563 (691)
++.++|+||+|+|||++|+.+|+.+..... ...|+.. .|...+..... ..-| ..-..+..
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 456999999999999999999999853211 0011110 01111100000 0000 00111222
Q ss_pred HHHHhc-----ccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhc
Q 005548 564 CLKNVG-----TANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLL 638 (691)
Q Consensus 564 ~l~~~~-----~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLl 638 (691)
....+. ....|+++|+++.+.. ..++.|+..|+. . ..+++||++||.++.+.+.+.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~----~a~naLLk~LEe------------p---~~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNL----QAANSLLKVLEE------------P---PPQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCH----HHHHHHHHHHHh------------C---cCCCEEEEEeCChHhChHHHH
Confidence 222221 1234899999988753 345566665543 1 245778889999889989999
Q ss_pred CeEEEEEEcCCCHHHHHHHHH
Q 005548 639 DRMEVIAIAGYITDEKMHIAR 659 (691)
Q Consensus 639 dR~~iI~~~~~~~~e~~~I~~ 659 (691)
+||..+.|.+++.++..+.+.
T Consensus 162 SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 162 SRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred HHhhhhcCCCCCHHHHHHHHH
Confidence 999999999999888765554
No 435
>PRK12377 putative replication protein; Provisional
Probab=98.47 E-value=2.5e-07 Score=95.25 Aligned_cols=125 Identities=20% Similarity=0.212 Sum_probs=69.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchh-hhhhcccCcccccccchHHHHHHHhcccCCEEEehhhhh
Q 005548 504 GKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADV-AEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDK 582 (691)
Q Consensus 504 g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~-~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEidk 582 (691)
..+++|+||||||||+|+.+||..+......+.+....+. ..+.. .+... ......+.. ....++++|||++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~---~~~~~--~~~~~~l~~-l~~~dLLiIDDlg~ 174 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE---SYDNG--QSGEKFLQE-LCKVDLLVLDEIGI 174 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH---HHhcc--chHHHHHHH-hcCCCEEEEcCCCC
Confidence 4689999999999999999999998544333333222221 12211 11000 011122222 23456999999976
Q ss_pred hcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC-----CCChhhcCeEE-----EEEEcCCC
Q 005548 583 LGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE-----NIPNPLLDRME-----VIAIAGYI 650 (691)
Q Consensus 583 l~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~-----~l~~aLldR~~-----iI~~~~~~ 650 (691)
... .......|+++++... .++..+|+|||... .+.+.++||+. .|.|.+.+
T Consensus 175 ~~~--s~~~~~~l~~ii~~R~--------------~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 175 QRE--TKNEQVVLNQIIDRRT--------------ASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred CCC--CHHHHHHHHHHHHHHH--------------hcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 532 2224556667766411 12345677999642 24556666662 25565543
No 436
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.47 E-value=6.1e-07 Score=102.04 Aligned_cols=190 Identities=17% Similarity=0.261 Sum_probs=114.0
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---cCCeEEEEeCccch---hhhhhccc
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARAL---NRKFFRFSVGGLAD---VAEIKGHR 550 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l---~~~~~~i~~~~~~~---~~~l~g~~ 550 (691)
++++|.....+.+.+.+... .....+|+|.|++||||+++|++|.... +.+++.++|..+.+ ..+++|+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~----A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~ 287 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLY----ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYE 287 (526)
T ss_pred hheeeCCHHHHHHHHHHHHH----hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCc
Confidence 36778777766666655321 1245789999999999999999999775 45799999987754 34566654
Q ss_pred Cc-ccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCC
Q 005548 551 RT-YIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANV 629 (691)
Q Consensus 551 ~~-~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~ 629 (691)
.+ +.|...+.....+.. ..++.+||||++.++. ..+..|+..|+......+.. .... .-++.+|++||.
T Consensus 288 ~gaftga~~~~~~Gl~e~--A~gGTLfLdeI~~Lp~----~~Q~~Ll~~L~~~~~~r~g~-~~~~---~~dvRiIaat~~ 357 (526)
T TIGR02329 288 EGAFTGARRGGRTGLIEA--AHRGTLFLDEIGEMPL----PLQTRLLRVLEEREVVRVGG-TEPV---PVDVRVVAATHC 357 (526)
T ss_pred ccccccccccccccchhh--cCCceEEecChHhCCH----HHHHHHHHHHhcCcEEecCC-Ccee---eecceEEeccCC
Confidence 32 222211111112222 2456999999999864 34567777665421111000 0011 124578888875
Q ss_pred C-------CCCChhhcCeEEE--EEEcCCCH--HHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHH
Q 005548 630 V-------ENIPNPLLDRMEV--IAIAGYIT--DEKMHIARDYLEKTTREACGIKPEQKITAGKQGFG 686 (691)
Q Consensus 630 ~-------~~l~~aLldR~~i--I~~~~~~~--~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ 686 (691)
. ..+.+.|..|+.. |.++++.. ++...++..|+.+.... .+ +.++++++..
T Consensus 358 ~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~-~~-----~~~~~~a~~~ 419 (526)
T TIGR02329 358 ALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAA-LR-----LPDSEAAAQV 419 (526)
T ss_pred CHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHH-cC-----CCCCHHHHHH
Confidence 4 2355567778864 55666553 55667788888765322 22 3477777665
No 437
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.47 E-value=3.1e-07 Score=109.25 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=49.8
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc-ccCcccccccchH
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG-HRRTYIGAMPGKM 561 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g-~~~~~vG~~~~~i 561 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+.+..|.|.++|. +..++.. ..+..+|+++|..
T Consensus 495 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~-~i~~~~~~~lr~~i~~v~Q~~ 562 (710)
T TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI-PREEIPREVLANSVAMVDQDI 562 (710)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE-eHHHCCHHHHHhheeEEecCC
Confidence 34444 67899999999999999999999999999999999999885 3333211 1234566666653
No 438
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.47 E-value=3.3e-07 Score=89.98 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=41.1
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA 541 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~ 541 (691)
+..++ .+..+..+.++|.||+|||||+++||+.+.++.|.|.+.|..
T Consensus 22 l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~d 69 (263)
T COG1101 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVD 69 (263)
T ss_pred HhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECcee
Confidence 34444 678999999999999999999999999999999999988754
No 439
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.46 E-value=1.2e-07 Score=105.28 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccc
Q 005548 482 LNDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA 541 (691)
Q Consensus 482 l~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~ 541 (691)
++++.|.|....++.+++ .+.+|++.+|+|.||+|||||+|.|++.+.++.|+|.+.|..
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~ 71 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKP 71 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEE
Confidence 445556666556666666 688999999999999999999999999999999999887743
No 440
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.46 E-value=2.8e-07 Score=107.26 Aligned_cols=45 Identities=31% Similarity=0.500 Sum_probs=39.9
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+ +..|+|.++|.
T Consensus 366 L~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~ 411 (588)
T PRK11174 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGI 411 (588)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCE
Confidence 44444 67899999999999999999999999999 88999999884
No 441
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=7e-07 Score=98.36 Aligned_cols=59 Identities=25% Similarity=0.417 Sum_probs=47.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhh-hcccCcccccccch
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEI-KGHRRTYIGAMPGK 560 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l-~g~~~~~vG~~~~~ 560 (691)
.+++|+.++++|+|||||||++|+|-+++. ..|+|.++|.. ..++ ....++-+|+.||.
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~d-ik~~~~~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQD-IKEVSLESLRQSIGVVPQD 433 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCee-HhhhChHHhhhheeEeCCc
Confidence 678999999999999999999999999998 88999998864 3333 23335667777776
No 442
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.46 E-value=2.4e-07 Score=118.23 Aligned_cols=146 Identities=19% Similarity=0.259 Sum_probs=86.7
Q ss_pred Hhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcccCcccccccchHH--------HH
Q 005548 494 AVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMV--------QC 564 (691)
Q Consensus 494 ~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~~~~~vG~~~~~i~--------~~ 564 (691)
++.+++ .+.+|++++|+||||+|||||+++|++.+.+..|++.+.|..-.... ...+..+|+.++... ..
T Consensus 945 aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~-~~~r~~IG~~pQ~~~L~~~LTV~E~ 1023 (2272)
T TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL-DAVRQSLGMCPQHNILFHHLTVAEH 1023 (2272)
T ss_pred EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchH-HHHhhcEEEEecCCcCCCCCCHHHH
Confidence 344455 67899999999999999999999999999999999998874311111 111234565555411 11
Q ss_pred HHHhcccCCE----------EEehh------hhhhcccCCCC------HHHHHH------------hhcCHHHHHHHHHh
Q 005548 565 LKNVGTANPL----------VLIDE------IDKLGRGHAGD------PASALL------------ELLDPEQNANFLDH 610 (691)
Q Consensus 565 l~~~~~~~~V----------lllDE------idkl~~~~~~~------~~~~LL------------~~LD~~~~~~~~d~ 610 (691)
+.......++ -++++ .++.....+++ .+.+|. ..||+.....+.+.
T Consensus 1024 L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~l 1103 (2272)
T TIGR01257 1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL 1103 (2272)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 1000000000 00111 11111222222 122222 47899888888888
Q ss_pred hccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 611 YLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 611 ~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
+.+.. .+..+|+|||..+.+ ..++||+.++
T Consensus 1104 L~~l~---~g~TIIltTHdmdea-~~laDrI~iL 1133 (2272)
T TIGR01257 1104 LLKYR---SGRTIIMSTHHMDEA-DLLGDRIAII 1133 (2272)
T ss_pred HHHHh---CCCEEEEEECCHHHH-HHhCCEEEEE
Confidence 87763 356778888988776 5688998766
No 443
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=5.7e-07 Score=93.18 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=35.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc--C---CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALN--R---KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~--~---~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+. + ..|+|.+.|.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (252)
T PRK14256 26 DFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDT 71 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCE
Confidence 578999999999999999999999999975 2 4688888774
No 444
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=5e-07 Score=93.54 Aligned_cols=41 Identities=32% Similarity=0.497 Sum_probs=35.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC-----eEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRK-----FFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~-----~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.++ .|+|.+.|.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 71 (252)
T PRK14272 26 DVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQ 71 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCE
Confidence 56799999999999999999999999998653 688888764
No 445
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=6.5e-07 Score=92.65 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=36.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+ ..|++.+.|.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 5679999999999999999999999999863 6788888774
No 446
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.44 E-value=5.5e-07 Score=94.46 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=38.6
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~ 540 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+. +..|+|.+.|.
T Consensus 40 l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 34444 578999999999999999999999999986 47788888764
No 447
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.44 E-value=3.1e-07 Score=104.79 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~ 66 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGK 66 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 56799999999999999999999999999988999988763
No 448
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.44 E-value=3.8e-07 Score=108.27 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=48.3
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh-cccCcccccccch
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK-GHRRTYIGAMPGK 560 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~-g~~~~~vG~~~~~ 560 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+.+..|.|.++|. +..++. ...+..+|+++|.
T Consensus 481 L~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~-~l~~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV-DIRQIDPADLRRNIGYVPQD 547 (694)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE-EhhhCCHHHHHhccEEECCC
Confidence 34444 67899999999999999999999999999999999999885 332221 1113445666555
No 449
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=6e-07 Score=93.95 Aligned_cols=41 Identities=34% Similarity=0.467 Sum_probs=35.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+. +..|+|.+.|.
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 88 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGL 88 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCE
Confidence 567999999999999999999999999864 46788888764
No 450
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=6.3e-07 Score=92.92 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=36.9
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||+|||||+++|++.... ..|+|.+.|.
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGE 73 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 3344 5789999999999999999999999998753 2688888764
No 451
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.44 E-value=5.8e-07 Score=94.07 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=38.5
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~ 540 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+. +..|+|.+.|.
T Consensus 36 l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 87 (267)
T PRK14237 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI 87 (267)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCE
Confidence 44444 678999999999999999999999999986 35788888774
No 452
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=7.5e-08 Score=109.96 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=38.6
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC--CeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNR--KFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~--~~~~i~~~~~ 540 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+.+ ..|.|.+.|.
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~ 69 (506)
T PRK13549 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGE 69 (506)
T ss_pred ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCE
Confidence 33444 5789999999999999999999999999875 6899888764
No 453
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.43 E-value=5.8e-07 Score=93.51 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=36.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 5679999999999999999999999999864 4888888774
No 454
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.43 E-value=6.6e-07 Score=93.61 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=38.7
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 35 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~ 86 (267)
T PRK14235 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGE 86 (267)
T ss_pred EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 33444 5789999999999999999999999999864 6799988774
No 455
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.43 E-value=6.7e-07 Score=92.54 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=35.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.. ..|+|.+.|.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ 70 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 5679999999999999999999999998653 4788888774
No 456
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.43 E-value=7.3e-07 Score=92.75 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=39.7
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|++.+.|.
T Consensus 37 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~ 83 (257)
T cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI 83 (257)
T ss_pred eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE
Confidence 34444 57899999999999999999999999999888898888774
No 457
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.42 E-value=6.6e-07 Score=92.96 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=36.2
Q ss_pred ccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEE
Q 005548 496 GKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFS 536 (691)
Q Consensus 496 ~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~ 536 (691)
.+++.+.+|+.++|+||||+|||||+++|++.+.+..|.|.
T Consensus 18 ~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 18 HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58 (255)
T ss_pred hcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence 34445679999999999999999999999999999999885
No 458
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=6.7e-07 Score=92.63 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=35.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++...+ ..|+|.+.|.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK 71 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCE
Confidence 5679999999999999999999999998764 5688888764
No 459
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.42 E-value=4.3e-07 Score=107.68 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=41.2
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+.+..|.|.++|.
T Consensus 469 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 515 (686)
T TIGR03797 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQ 515 (686)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 44444 67899999999999999999999999999999999999885
No 460
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.42 E-value=3.5e-07 Score=106.93 Aligned_cols=147 Identities=19% Similarity=0.259 Sum_probs=86.4
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh----cccCcccccccchHH-------
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK----GHRRTYIGAMPGKMV------- 562 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~----g~~~~~vG~~~~~i~------- 562 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.. +.... ...+..+|+++|...
T Consensus 340 l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~-i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~ 418 (623)
T PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR-IDTLSPGKLQALRRDIQFIFQDPYASLDPRQ 418 (623)
T ss_pred EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE-CCcCCHHHHHHhcCCeEEEecCchhhcCCCC
Confidence 34444 678999999999999999999999999999899999987742 11110 001234666665421
Q ss_pred ---HHHHHh----cccCC------E------EEeh-h-hhhhcccCCCC------HHHHHH------------hhcCHHH
Q 005548 563 ---QCLKNV----GTANP------L------VLID-E-IDKLGRGHAGD------PASALL------------ELLDPEQ 603 (691)
Q Consensus 563 ---~~l~~~----~~~~~------V------lllD-E-idkl~~~~~~~------~~~~LL------------~~LD~~~ 603 (691)
..+... ..... + +=|+ + .++.....+++ .+.+|+ ..||...
T Consensus 419 tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~ 498 (623)
T PRK10261 419 TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI 498 (623)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 111100 00000 0 0011 1 12222233333 122333 4788888
Q ss_pred HHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 604 NANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 604 ~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
...+.+.+..+..+ .+..+|++||..+.+ ..++||+.++
T Consensus 499 ~~~i~~ll~~l~~~-~g~tvi~isHdl~~v-~~~~dri~vl 537 (623)
T PRK10261 499 RGQIINLLLDLQRD-FGIAYLFISHDMAVV-ERISHRVAVM 537 (623)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 88888877665422 255677777877766 5688998766
No 461
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.42 E-value=1.7e-06 Score=101.60 Aligned_cols=193 Identities=13% Similarity=0.169 Sum_probs=116.4
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc---CCeEEEEeCccch---hhhhhccc
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALN---RKFFRFSVGGLAD---VAEIKGHR 550 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~---~~~~~i~~~~~~~---~~~l~g~~ 550 (691)
.+++|.+...+.+.+.+... ...+.+++|+|++||||+++|++|..... .+++.++|..+.+ ..++.|..
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~----a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~ 400 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQA----AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSD 400 (638)
T ss_pred cceEECCHHHHHHHHHHHHH----hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCC
Confidence 45667666555554444321 13456799999999999999999998764 5799999988754 24455533
Q ss_pred CcccccccchHHHHHHHhcccCCEEEehhhhhhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCC
Q 005548 551 RTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVV 630 (691)
Q Consensus 551 ~~~vG~~~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~ 630 (691)
. |...+.....+. ...++++|||||+.++. +.+..|+..|+....... +.-..++ -++.+|+|||..
T Consensus 401 ~---~~~~~~~~g~~~--~a~~GtL~ldei~~l~~----~~Q~~Ll~~l~~~~~~~~-~~~~~~~---~~~riI~~t~~~ 467 (638)
T PRK11388 401 R---TDSENGRLSKFE--LAHGGTLFLEKVEYLSP----ELQSALLQVLKTGVITRL-DSRRLIP---VDVRVIATTTAD 467 (638)
T ss_pred C---cCccCCCCCcee--ECCCCEEEEcChhhCCH----HHHHHHHHHHhcCcEEeC-CCCceEE---eeEEEEEeccCC
Confidence 1 111110001111 22456999999999864 445677777653111000 0000000 146788888863
Q ss_pred -------CCCChhhcCeEEEE--EEcCCCH--HHHHHHHHHHHhHHhHHhcCCCCCceeeCHHHHHHhhhc
Q 005548 631 -------ENIPNPLLDRMEVI--AIAGYIT--DEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 631 -------~~l~~aLldR~~iI--~~~~~~~--~e~~~I~~~~l~~~~~~~~~l~~~~l~is~~~i~~ii~~ 690 (691)
..+.+.|..|+..+ .++++-. ++...++..|+.+... ..+. .+.++++++..|.++
T Consensus 468 l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~-~~~~---~~~~s~~a~~~L~~y 534 (638)
T PRK11388 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEK-RFST---RLKIDDDALARLVSY 534 (638)
T ss_pred HHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHH-HhCC---CCCcCHHHHHHHHcC
Confidence 34566777888654 5555543 4556778888876543 3332 256999999988764
No 462
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.42 E-value=8.1e-07 Score=92.82 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=35.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.. ..|+|.+.|.
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 77 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGK 77 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCE
Confidence 5689999999999999999999999998762 5788888763
No 463
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=8.3e-07 Score=93.86 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=37.5
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||+|||||+++|++... +..|+|.+.|.
T Consensus 56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~ 106 (286)
T PRK14275 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGE 106 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCE
Confidence 3444 578999999999999999999999999754 36888888774
No 464
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1e-07 Score=109.00 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=39.8
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 21 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 67 (510)
T PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNI 67 (510)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCE
Confidence 33444 57899999999999999999999999999888999988763
No 465
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=7.7e-07 Score=92.13 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=35.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+. +..|+|.+.|.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~ 71 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQ 71 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCE
Confidence 567999999999999999999999999985 35788888774
No 466
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.41 E-value=6.3e-07 Score=100.53 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=36.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G 85 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 5789999999999999999999999999988888887765
No 467
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.41 E-value=5.9e-07 Score=98.08 Aligned_cols=61 Identities=20% Similarity=0.381 Sum_probs=47.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc-ccCcccccccchH
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG-HRRTYIGAMPGKM 561 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g-~~~~~vG~~~~~i 561 (691)
.+.+|..++++||+|+|||||+|.|.+.+.+..|.|.++|. +...+.. .-...+||.||.+
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga-~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA-DLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch-hhhcCCHHHhccccCcCcccc
Confidence 45789999999999999999999999999999999998874 3333221 1235678888763
No 468
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=6.7e-07 Score=93.06 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=38.2
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 79 (258)
T PRK14268 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE 79 (258)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCE
Confidence 33444 5789999999999999999999999998864 5788888764
No 469
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.40 E-value=7.2e-07 Score=93.04 Aligned_cols=41 Identities=24% Similarity=0.466 Sum_probs=35.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC---eEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRK---FFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~---~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+. .|+|.+.|.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~ 69 (262)
T PRK09984 26 NIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR 69 (262)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCE
Confidence 56799999999999999999999999998764 388888774
No 470
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.40 E-value=5e-07 Score=101.02 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=41.0
Q ss_pred Hhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 494 AVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 494 ~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
++.+++ .+.+|++++|+|++|||||||+|+|++...+..+.+.+.|.
T Consensus 306 Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~ 353 (539)
T COG1123 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353 (539)
T ss_pred eeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCc
Confidence 344455 67899999999999999999999999999999999988774
No 471
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=8.8e-08 Score=104.31 Aligned_cols=46 Identities=30% Similarity=0.445 Sum_probs=40.8
Q ss_pred ccccchHHHHHHHHHHHHhccccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcC
Q 005548 477 EDHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNR 530 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~~l~l~~~~~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~ 530 (691)
.|+.|++.+|+.+.-..+ .|++++|+||||||||+|++.+.+.+.+
T Consensus 179 ~DV~GQ~~AKrAleiAAA--------GgHnLl~~GpPGtGKTmla~Rl~~lLPp 224 (490)
T COG0606 179 KDVKGQEQAKRALEIAAA--------GGHNLLLVGPPGTGKTMLASRLPGLLPP 224 (490)
T ss_pred hhhcCcHHHHHHHHHHHh--------cCCcEEEecCCCCchHHhhhhhcccCCC
Confidence 599999999998877665 5799999999999999999999999853
No 472
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.40 E-value=6.2e-07 Score=106.70 Aligned_cols=65 Identities=15% Similarity=0.350 Sum_probs=48.7
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhc-ccCcccccccch
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKG-HRRTYIGAMPGK 560 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g-~~~~~vG~~~~~ 560 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+.+..|.|.++|. +..++.. ..+..+|+.+|.
T Consensus 490 L~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~-~i~~~~~~~lr~~i~~v~Q~ 556 (708)
T TIGR01193 490 LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF-SLKDIDRHTLRQFINYLPQE 556 (708)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE-EHHHcCHHHHHHheEEEecC
Confidence 33444 67899999999999999999999999999999999999885 3333211 113456666655
No 473
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.40 E-value=5.6e-07 Score=104.83 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=40.9
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+++|+.++++|++|+|||||++.|++.+.+..|.|.++|.
T Consensus 357 l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~ 403 (592)
T PRK10790 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR 403 (592)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCE
Confidence 34444 67899999999999999999999999999999999999884
No 474
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1e-06 Score=91.75 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=35.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 29 DIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCE
Confidence 5679999999999999999999999999864 2688888764
No 475
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.39 E-value=6.9e-07 Score=91.90 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=36.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh--cCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARAL--NRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l--~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+ .+..|.|.+.|.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~ 64 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQ 64 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCE
Confidence 56799999999999999999999999985 567888888774
No 476
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=2.1e-07 Score=96.81 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=36.9
Q ss_pred Hhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCc
Q 005548 494 AVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGG 539 (691)
Q Consensus 494 ~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~ 539 (691)
.+.+++ .+.+|+.++|+||||+|||||+++|++.+.+..++|.+.|
T Consensus 25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G 71 (257)
T PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71 (257)
T ss_pred eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcC
Confidence 344444 5789999999999999999999999999887775554443
No 477
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=9.8e-07 Score=91.34 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=34.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc--C---CeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALN--R---KFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~--~---~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++..+ + ..|+|.+.|.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14245 25 EIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGR 70 (250)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCE
Confidence 567999999999999999999999999743 2 3688888774
No 478
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.38 E-value=6.7e-07 Score=106.16 Aligned_cols=45 Identities=27% Similarity=0.525 Sum_probs=40.3
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+++|+.++++||+|+|||||++.|++.+.+..|+|.++|.
T Consensus 474 ~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~ 519 (694)
T TIGR01846 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGV 519 (694)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 3444 57899999999999999999999999999999999999885
No 479
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=8.7e-07 Score=91.93 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=37.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++.+.+..|+|.+.|.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 67 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQ 67 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCE
Confidence 56799999999999999999999999999999999988774
No 480
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=9.3e-07 Score=92.86 Aligned_cols=46 Identities=26% Similarity=0.319 Sum_probs=37.6
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.. ..|.|.+.|.
T Consensus 36 l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 87 (274)
T PRK14265 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDR 87 (274)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCE
Confidence 33444 5789999999999999999999999998753 3688888774
No 481
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.38 E-value=6.9e-07 Score=104.54 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=39.4
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+.+|++++|+||||+|||||+++|++.+.+..|.|.+++.
T Consensus 32 l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~ 78 (623)
T PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM 78 (623)
T ss_pred EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCE
Confidence 34444 57899999999999999999999999999888898887663
No 482
>PRK08116 hypothetical protein; Validated
Probab=98.38 E-value=7.8e-07 Score=93.01 Aligned_cols=129 Identities=18% Similarity=0.230 Sum_probs=70.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccch-hhhhhcccCcccccccchHHHHHHHhcccCCEEEehhhh
Q 005548 503 QGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD-VAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEID 581 (691)
Q Consensus 503 ~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~-~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~VlllDEid 581 (691)
.+.+++|+|++|+|||+|+.+|++.+......+.+....+ ...+.. .|-+.........+.. ....++++||+++
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~---~~~~~~~~~~~~~~~~-l~~~dlLviDDlg 188 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKS---TYKSSGKEDENEIIRS-LVNADLLILDDLG 188 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH---HHhccccccHHHHHHH-hcCCCEEEEeccc
Confidence 3457999999999999999999998743322232222222 112211 1111111111122222 2344699999996
Q ss_pred hhcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCC-C----CChhhcCeE----EEEEEcCCCH
Q 005548 582 KLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVE-N----IPNPLLDRM----EVIAIAGYIT 651 (691)
Q Consensus 582 kl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~-~----l~~aLldR~----~iI~~~~~~~ 651 (691)
.-.. .......|++++|.. + + .+..+|+|||... . ++..+.+|+ ..|.+.+.+.
T Consensus 189 ~e~~--t~~~~~~l~~iin~r--------~-----~-~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 189 AERD--TEWAREKVYNIIDSR--------Y-----R-KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CCCC--CHHHHHHHHHHHHHH--------H-----H-CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 4321 122355666666541 1 1 2345777888752 2 456778884 4577777664
No 483
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.38 E-value=8.7e-07 Score=102.81 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=41.1
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+.+..|+|.++|.
T Consensus 356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~ 402 (574)
T PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQ 402 (574)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 34444 67899999999999999999999999999999999999885
No 484
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=1.4e-06 Score=90.31 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=35.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||+++|++... +..|+|.+.|.
T Consensus 27 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 27 DIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 567999999999999999999999999975 24788888774
No 485
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.37 E-value=1.7e-06 Score=98.20 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=45.2
Q ss_pred ccccchHHHHHHHHH-HHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 005548 477 EDHYGLNDVKERILE-FIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVG 538 (691)
Q Consensus 477 ~~i~Gl~~vk~~i~~-~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~ 538 (691)
+.++-++++.+.+.. ...+.+++ .+.+|..++|+||||+|||||+|.|++.+++..|.|.++
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g 382 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG 382 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC
Confidence 344445555555532 23344455 678999999999999999999999999998877777654
No 486
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.37 E-value=4.6e-07 Score=97.54 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=29.5
Q ss_pred EEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 509 LSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 509 L~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
|+||||+|||||+++|++...+..|+|.+.|.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~ 32 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGE 32 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCE
Confidence 58999999999999999999999999998774
No 487
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.37 E-value=8.6e-07 Score=102.79 Aligned_cols=46 Identities=17% Similarity=0.375 Sum_probs=40.3
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+.+..|+|.++|.
T Consensus 331 l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~ 377 (569)
T PRK10789 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDI 377 (569)
T ss_pred ccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCE
Confidence 34444 67899999999999999999999999999999999988774
No 488
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.37 E-value=2.6e-07 Score=111.76 Aligned_cols=142 Identities=19% Similarity=0.197 Sum_probs=93.1
Q ss_pred HHHHHHHHHH-Hhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhhcc--cCcccccccc
Q 005548 484 DVKERILEFI-AVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGH--RRTYIGAMPG 559 (691)
Q Consensus 484 ~vk~~i~~~l-~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~g~--~~~~vG~~~~ 559 (691)
++++.+.... ++.+++ .++++++++|.||||+||||+.++|.+...++.|.+.+.|.. ....... ..+.+|+.||
T Consensus 569 ~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~-i~~~~~~~~~~~~iGyCPQ 647 (885)
T KOG0059|consen 569 NLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHD-ITVSTDFQQVRKQLGYCPQ 647 (885)
T ss_pred ceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCc-cccccchhhhhhhcccCCc
Confidence 3344443333 566666 789999999999999999999999999999999998886643 2211111 2456788777
Q ss_pred hHHH--------HHHHh-------------------------------------------------cccCCEEEehhhhh
Q 005548 560 KMVQ--------CLKNV-------------------------------------------------GTANPLVLIDEIDK 582 (691)
Q Consensus 560 ~i~~--------~l~~~-------------------------------------------------~~~~~VlllDEidk 582 (691)
.-.. .+... ...++++++||.
T Consensus 648 ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEP-- 725 (885)
T KOG0059|consen 648 FDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEP-- 725 (885)
T ss_pred hhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCC--
Confidence 6110 00000 001125555553
Q ss_pred hcccCCCCHHHHHHhhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 583 LGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 583 l~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
..++||.....+++.+...... ++ .+|+|||..++. +++|+|+.++
T Consensus 726 -------------stGmDP~arr~lW~ii~~~~k~-g~-aiiLTSHsMeE~-EaLCtR~aIm 771 (885)
T KOG0059|consen 726 -------------STGLDPKARRHLWDIIARLRKN-GK-AIILTSHSMEEA-EALCTRTAIM 771 (885)
T ss_pred -------------CCCCCHHHHHHHHHHHHHHHhc-CC-EEEEEcCCHHHH-HHHhhhhhee
Confidence 1368887777777777665422 33 889999999988 8899998654
No 489
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.36 E-value=6.3e-07 Score=102.99 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=41.0
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+.+..|.|.++|.
T Consensus 338 l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~ 384 (529)
T TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGV 384 (529)
T ss_pred ccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 34444 67899999999999999999999999999999999998875
No 490
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=1e-06 Score=94.87 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=38.6
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhc-----CCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALN-----RKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~-----~~~~~i~~~~~ 540 (691)
+.+++ .+.+|+.++|+||+|+|||||+++|++... +..|.|.+.|.
T Consensus 98 L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~ 149 (329)
T PRK14257 98 LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGT 149 (329)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 44444 678999999999999999999999999985 34788888775
No 491
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=1.1e-06 Score=90.94 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=35.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCC-----eEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRK-----FFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~-----~~~i~~~~~ 540 (691)
.+.+|+.++|+||||+|||||++.|++.+.+. .|.|.+.|.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 26 DFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNE 71 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCE
Confidence 56799999999999999999999999998765 488887764
No 492
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.36 E-value=1.3e-06 Score=91.78 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=37.7
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+++ .+.+|++++|+||||+|||||+++|++.+.. ..|++.+.|.
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~ 92 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQ 92 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCE
Confidence 3344 5789999999999999999999999999763 5788888764
No 493
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.36 E-value=7.2e-07 Score=103.86 Aligned_cols=65 Identities=18% Similarity=0.365 Sum_probs=47.7
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccchhhhhh-cccCcccccccch
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIK-GHRRTYIGAMPGK 560 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~~~~~l~-g~~~~~vG~~~~~ 560 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+.+..|.|.++|.. ..++. ...+..+++.+|.
T Consensus 351 L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~-i~~~~~~~~r~~i~~v~Q~ 417 (588)
T PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD-IRTVTRASLRRNIAVVFQD 417 (588)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE-hhhCCHHHHHhheEEEecC
Confidence 34444 678999999999999999999999999999999999988743 22221 1113445565555
No 494
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=2.2e-07 Score=108.77 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=37.5
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVG 538 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~ 538 (691)
+.+++ .+.+|..++|+||||+|||||+++|++.+.+..|.|.++
T Consensus 328 l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~ 372 (638)
T PRK10636 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA 372 (638)
T ss_pred eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 34444 678999999999999999999999999998888887764
No 495
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.35 E-value=6.7e-07 Score=101.81 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=37.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 500 GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 500 ~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+.+|++++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 60 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGK 60 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCE
Confidence 56799999999999999999999999999888999988774
No 496
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.35 E-value=6.3e-07 Score=102.27 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=39.0
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus 21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 66 (501)
T PRK11288 21 DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ 66 (501)
T ss_pred eeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 3344 57899999999999999999999999999888899988763
No 497
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.35 E-value=9e-07 Score=102.77 Aligned_cols=46 Identities=24% Similarity=0.467 Sum_probs=40.5
Q ss_pred hcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCcc
Q 005548 495 VGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 495 l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+++ .+++|+.++++||+|+|||||++.|++.+.+..|+|.++|.
T Consensus 356 L~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred ccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 33444 67899999999999999999999999999999999988874
No 498
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.35 E-value=1.4e-06 Score=91.13 Aligned_cols=147 Identities=19% Similarity=0.235 Sum_probs=89.3
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCccch--h--hhhhcccCcccccccchHHH--
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGLAD--V--AEIKGHRRTYIGAMPGKMVQ-- 563 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~~~--~--~~l~g~~~~~vG~~~~~i~~-- 563 (691)
.+++ .+.+|+.++|+|.+|||||+++++|.+.+.. ..|+|.+.|..- . .+....+.+.+++.+|....
T Consensus 22 ~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sL 101 (316)
T COG0444 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSL 101 (316)
T ss_pred eceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhc
Confidence 3444 5789999999999999999999999999973 246777777421 1 11223345678888887321
Q ss_pred --------HHHHhccc-CC----------------EEEehhh----hhhcccCCCCH------HHHHH------------
Q 005548 564 --------CLKNVGTA-NP----------------LVLIDEI----DKLGRGHAGDP------ASALL------------ 596 (691)
Q Consensus 564 --------~l~~~~~~-~~----------------VlllDEi----dkl~~~~~~~~------~~~LL------------ 596 (691)
.+..+... .. .+=|++. +..+...+++- +.+|.
T Consensus 102 nPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPT 181 (316)
T COG0444 102 NPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPT 181 (316)
T ss_pred CChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCc
Confidence 11111110 00 0112222 12223344441 12222
Q ss_pred hhcCHHHHHHHHHhhccccccCCceEEEEEeCCCCCCChhhcCeEEEE
Q 005548 597 ELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLDRMEVI 644 (691)
Q Consensus 597 ~~LD~~~~~~~~d~~~~~~~~~~~vi~I~TsN~~~~l~~aLldR~~iI 644 (691)
..||......+++.+.++..+ .+..+|+.||+...+ ..++||+.++
T Consensus 182 TALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vv-a~~aDri~VM 227 (316)
T COG0444 182 TALDVTVQAQILDLLKELQRE-KGTALILITHDLGVV-AEIADRVAVM 227 (316)
T ss_pred chhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-HHhcceEEEE
Confidence 478888888888888877654 456666677777766 6789999765
No 499
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=7.4e-07 Score=86.40 Aligned_cols=60 Identities=22% Similarity=0.437 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHhcccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcCCeEEEEeCccc
Q 005548 482 LNDVKERILEFIAVGKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA 541 (691)
Q Consensus 482 l~~vk~~i~~~l~l~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~ 541 (691)
++++.+.+.....+..++ .+++|.+..|+||||+|||||...+++.+..+.|.+.+.|..
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~ 64 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLE 64 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeee
Confidence 456777777777777777 789999999999999999999999999999999999887753
No 500
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.35 E-value=1e-06 Score=101.25 Aligned_cols=45 Identities=27% Similarity=0.334 Sum_probs=38.2
Q ss_pred cccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhcC-----CeEEEEeCcc
Q 005548 496 GKLR-GISQGKIICLSGPPGVGKTSIGRSIARALNR-----KFFRFSVGGL 540 (691)
Q Consensus 496 ~~~~-~~~~g~~vlL~GPpGtGKTtLakaLA~~l~~-----~~~~i~~~~~ 540 (691)
.+++ .+.+|+.++|+||||+|||||+++|++.+.+ ..|+|.+.|.
T Consensus 26 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 76 (529)
T PRK15134 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGE 76 (529)
T ss_pred eceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCE
Confidence 3444 5679999999999999999999999999875 5788888774
Done!