Query 005548
Match_columns 691
No_of_seqs 352 out of 3518
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:23:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005548.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2055-2059//hhsearch_pdb/005548hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ljc_A ATP-dependent protease 1.0 1 1 336.9 28.8 230 146-395 15-250 (252)
2 3m6a_A ATP-dependent protease 1.0 1 1 295.3 10.8 291 398-690 4-294 (543)
3 3m65_A ATP-dependent protease 1.0 1 1 275.3 24.2 198 146-363 6-209 (209)
4 1zbo_A Hypothetical protein BP 1.0 1 1 249.3 23.9 191 147-361 2-205 (210)
5 4b4t_K 26S protease regulatory 1.0 1 1 197.1 10.5 199 445-665 139-360 (428)
6 4b4t_J 26S protease regulatory 1.0 1 1 182.8 14.2 175 469-665 140-335 (405)
7 4b4t_M 26S protease regulatory 1.0 1 1 179.6 16.1 174 470-665 174-368 (434)
8 4b4t_I 26S protease regulatory 1.0 1 1 178.5 15.7 179 468-665 173-369 (437)
9 4b4t_L 26S protease subunit RP 1.0 1 1 177.6 15.2 173 471-665 175-368 (437)
10 4b4t_H 26S protease regulatory 1.0 1 1 177.6 12.6 179 468-665 200-396 (467)
No 1
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=1.00 E-value=1 Score=336.91 Aligned_cols=230 Identities=27% Similarity=0.368 Sum_probs=211.5
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87279975499863579300288389768999999986199969999851799889887653322322343333344241
Q 005548 146 YLSVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLLKDDSLTDASTDTEKSVSDLKGKELFNRLHEV 225 (691)
Q Consensus 146 ~~~lPlfPL~~~vLfPg~~lpL~Ife~ry~~~v~~~~~~~~~~~~v~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v 225 (691)
+.++|+|||+++|+|||+++||+||+|||++||++|++++ ..||+++++++..++|+. +++|+|
T Consensus 15 ~~~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~-~~~~lv~q~~~~~~~p~~---------------~~l~~v 78 (252)
T 3ljc_A 15 RIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD-KKIMLVAQKEASTDEPGV---------------NDLFTV 78 (252)
T ss_dssp CCCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTT-TEEEEEEBCSSCCSSCCS---------------SSBCSE
T ss_pred CCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCC---------------CCHHHE
T ss_conf 7750599957921169944589978788999999999649-989999943777679996---------------534132
Q ss_pred EEEEEEEEE-----CCEEEEEEEEEEEEEEEEEECCCE-EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 239999786-----085999996668999775323984-99999548999999917899979999999999998285422
Q 005548 226 GTLAQISSI-----QGDQVILIGHRRLRITEMVSEDPL-TVKVDHLKDKPYDKDDDVIKATSFEVISTLRDVLKTSSLWR 299 (691)
Q Consensus 226 Gt~a~I~~~-----g~~~Ilv~G~~R~rI~~~~~~~p~-~aev~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 299 (691)
||+|+|+++ |++.|+++|.+||+|.++..++|| .|+|+++++++. ++.+.+++...+.+.++++..+++.++
T Consensus 79 Gt~a~I~~~~~lpdG~~~v~v~G~~R~rI~~~~~~~~~~~a~ve~l~d~~~--~~~e~~al~~~l~~~~~~~~~l~~~~~ 156 (252)
T 3ljc_A 79 GTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTI--DEREQEVLVRTAISQFEGYIKLNKKIP 156 (252)
T ss_dssp EEEEEECCCBCCTTSCEEEEEEEEEEEECSEEEEETTEEEEECCCCCCCCS--CHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred EEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEECCCCCEEEEEEEECCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 389999997887998399999999999999997478828999986067788--876899999999999999998566499
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55888730038999557999999808999444889971039999999999999999888688999999999986399999
Q 005548 300 DHVQTYTQHIGDFSFPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELVKKEMEISKIQESIAKAIEEKISGEQRR 379 (691)
Q Consensus 300 ~~~~~~~~~~~~~d~~~Lad~~a~~l~l~~~~KQ~lLe~~d~~~Rl~~l~~~L~~ei~~l~lq~~i~~~v~~ki~~~qre 379 (691)
.++...+..++ ||+||+|+||+++|++.++||++||+.|+.+|++.++++|.+|++.++++++|+++|+++|++.||+
T Consensus 157 ~e~~~~~~~~~--dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qre 234 (252)
T 3ljc_A 157 PEVLTSLNSID--DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQRE 234 (252)
T ss_dssp HHHHHHTTSCC--CHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999987557--8899999999848999999999980599999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 9999999999998085
Q 005548 380 YLLNEQLKAIKKELGL 395 (691)
Q Consensus 380 ~~l~eqLk~i~kel~~ 395 (691)
|+|+||||+|++|||.
T Consensus 235 y~LrEQlk~IqkELGe 250 (252)
T 3ljc_A 235 YYLNEQMKAIQKELGE 250 (252)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999998478
No 2
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=1.00 E-value=1 Score=295.28 Aligned_cols=291 Identities=49% Similarity=0.834 Sum_probs=263.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 20689999999999985421893568989999999850136774102367687532089998888523669998641101
Q 005548 398 DDKTALSAKFRERIEQYKDKCPRHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTALPWGNYSDENFDVIRAQKILDE 477 (691)
Q Consensus 398 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~ 477 (691)
++...++.+++++++.. .+|+++.+.+.+++.+++.+.+.+.+++++++|++|+..+||.+.+.+.+++.+.+..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~el~~l~~~~~~~~e~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~ 81 (543)
T 3m6a_A 4 EGKTGEVQTLTEKIEEA--GMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDDKLDLKEAGRLLDE 81 (543)
T ss_dssp ---CCTTTHHHHHHHSS--SCCCHHHHHHHHHHHSSCCCSSSCTTTTHHHHHHHHHHHSCSSCCCCCCCCTTTGGGTHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 40778999999999867--9999999999999999964798883276999999999648977545321059999998887
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCCCC
Q ss_conf 13240899999999998221248888846999867999089999999998247929999696431453401657631222
Q 005548 478 DHYGLNDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAM 557 (691)
Q Consensus 478 ~i~Gl~~vk~~i~~~l~~~~~~~~~~g~~ilL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~d~~~l~g~~~~~vG~~ 557 (691)
+++|++++++.+.+++.+..+....++.+++|+||||||||++++++++.++.+++.+++++..+..++.++.+.|+|+.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 75047999999999999987412678988999999998899999999986289869998246631655345777775037
Q ss_pred CCHHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 42489999971216988985100011135899789999950599779999985512554589669999817999999100
Q 005548 558 PGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPL 637 (691)
Q Consensus 558 ~~~i~~~l~~~~~~~~VlllDEidkl~~~~~~~~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~viiI~TsN~~~~l~~aL 637 (691)
++.+.+.+..+...++++|+||+|++....+++..+.|++.+|..+...|.+++.+..+++++++||+|+|..+.++++|
T Consensus 162 ~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL 241 (543)
T 3m6a_A 162 PGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPL 241 (543)
T ss_dssp --CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHH
T ss_pred CHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEEECCCCCCCCCHHH
T ss_conf 21899999985233989999326454443356899999998745523510104677054156458981469600099999
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHC
Q ss_conf 09088999818998999999999986875775199997402188989872516
Q 005548 638 LDRMEVIAIAGYITDEKMHIARDYLEKTTREACGIKPEQKITAGKQGFGIFRN 690 (691)
Q Consensus 638 ldR~~ii~~~~~~~~e~~~I~~~~l~~~~~~~~~~~~~~l~is~~~i~~ii~~ 690 (691)
++||.++.|..|+.+++.+|+..++.++....+++....+.++++++..++..
T Consensus 242 ~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 242 RDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp HHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred HHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 85243025289998999999999989999998089745566789999999984
No 3
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=275.30 Aligned_cols=198 Identities=20% Similarity=0.250 Sum_probs=179.4
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87279975499863579300288389768999999986199969999851799889887653322322343333344241
Q 005548 146 YLSVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLLKDDSLTDASTDTEKSVSDLKGKELFNRLHEV 225 (691)
Q Consensus 146 ~~~lPlfPL~~~vLfPg~~lpL~Ife~ry~~~v~~~~~~~~~~~~v~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v 225 (691)
+.++|+|||+++|+|||+++||+||+|||++|+++|++++ ..+|+++++++..++|+. +++|+|
T Consensus 6 ~~~lPl~PLr~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~-~~i~lv~q~~~~~~~p~~---------------~~l~~v 69 (209)
T 3m65_A 6 KRSIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHD-HMIFLATQQDISIDEPGE---------------DEIFTV 69 (209)
T ss_dssp EEEEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTT-SEEEEEEBSSTTCSSCCG---------------GGBCSE
T ss_pred CCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCC---------------CHHHHE
T ss_conf 7745899957943269900799979889999999998619-989999924777689980---------------113301
Q ss_pred EEEEEEEEE-----CCEEEEEEEEEEEEEEEEEECCCE-EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 239999786-----085999996668999775323984-99999548999999917899979999999999998285422
Q 005548 226 GTLAQISSI-----QGDQVILIGHRRLRITEMVSEDPL-TVKVDHLKDKPYDKDDDVIKATSFEVISTLRDVLKTSSLWR 299 (691)
Q Consensus 226 Gt~a~I~~~-----g~~~Ilv~G~~R~rI~~~~~~~p~-~aev~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 299 (691)
||+|+|.++ |+++|+++|++||+|.++.+++|| .|+|+++++++. .+.+.+++...+.+.++++..+++.++
T Consensus 70 Gt~a~I~~~~~l~dG~~~v~v~G~~R~ri~~~~~~~~~~~a~v~~~~~~~~--~~~e~~al~~~l~~~~~~~~~~~~~~~ 147 (209)
T 3m65_A 70 GTYTKIKQMLKLPNGTIRVLVEGLKRAHIVKYNEHEDYTSVDIQLIHEDDS--KDTEDEALMRTLLDHFDQYIKISKKIS 147 (209)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEECSSSEEEEEEECCCC----CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEECCCCCEEEEEEEECCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 589999997887998099999998899999997489948999998067788--987999999999999999998677899
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5588873003899955799999980899944488997103999999999999999988868899
Q 005548 300 DHVQTYTQHIGDFSFPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELVKKEMEISKIQE 363 (691)
Q Consensus 300 ~~~~~~~~~~~~~d~~~Lad~~a~~l~l~~~~KQ~lLe~~d~~~Rl~~l~~~L~~ei~~l~lq~ 363 (691)
.++...+..++ ||+|++|++|++++++.++||++||+.|+.+|++.++++|.+|++.+++++
T Consensus 148 ~e~~~~~~~~~--dp~~lad~ia~~l~l~~~ekQ~lLe~~d~~~Rl~~l~~~L~~E~e~~~l~~ 209 (209)
T 3m65_A 148 AETYAAVTDIE--EPGRMADIVASHLPLKLKDKQDILETADVKDRLNKVIDFINNEKEVLEIEK 209 (209)
T ss_dssp HHHHHHHHTCC--CHHHHHHHHHHHSCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999997569--989999999986899999999998479999999999999999999996529
No 4
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=1.00 E-value=1 Score=249.28 Aligned_cols=191 Identities=14% Similarity=0.111 Sum_probs=161.8
Q ss_pred CEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 72799754998635793002883897689999999861999699998517998-89887653322322343333344241
Q 005548 147 LSVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYAGAFLLKDDSL-TDASTDTEKSVSDLKGKELFNRLHEV 225 (691)
Q Consensus 147 ~~lPlfPL~~~vLfPg~~lpL~Ife~ry~~~v~~~~~~~~~~~~v~l~k~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~v 225 (691)
.++|+||| ++|+|||+++||+||||||++||++|++++ ..||+++++++.. ++|.. .+++|.|
T Consensus 2 ~~lPl~PL-~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~-~~~glv~~~~~~~~~~~~~--------------~~dl~~v 65 (210)
T 1zbo_A 2 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADG-SEFGVVVLEQGTEVRRPDG--------------REVLARA 65 (210)
T ss_dssp CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTT-CCEEEEEESSSCSSCCSSC--------------CCCEEEE
T ss_pred CEEEEEEC-CEEECCCCCEEEEECCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCC--------------CCCHHCE
T ss_conf 67637745-712059983436878778999999998449-9689999678865576545--------------5762126
Q ss_pred EEEEEEEEE-----CCEEEEEEEEEEEEEEE-EEECCCE-EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC---
Q ss_conf 239999786-----08599999666899977-5323984-9999954899999991789997999999999999828---
Q 005548 226 GTLAQISSI-----QGDQVILIGHRRLRITE-MVSEDPL-TVKVDHLKDKPYDKDDDVIKATSFEVISTLRDVLKTS--- 295 (691)
Q Consensus 226 Gt~a~I~~~-----g~~~Ilv~G~~R~rI~~-~~~~~p~-~aev~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--- 295 (691)
||+|+|.++ |++.|+++|.+||+|.+ +.+++|| .|+|+++++++....+.+.+++.+.+.+.++++...+
T Consensus 66 Gt~a~I~~~~~lpdG~~~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~~~~~~~~e~~al~~~l~~~~~~~~~~~~~~ 145 (210)
T 1zbo_A 66 GTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPP 145 (210)
T ss_dssp EEEEEEEEEECSSTTCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCT
T ss_pred EEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999873799669999999988999888616899279999983798877774889999999999999998741355
Q ss_pred --CCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --542255888730038999557999999808999444889971039999999999999999888688
Q 005548 296 --SLWRDHVQTYTQHIGDFSFPRLADFGAAISGANKLQCQQVLEELDVYKRLKLTLELVKKEMEISKI 361 (691)
Q Consensus 296 --~~~~~~~~~~~~~~~~~d~~~Lad~~a~~l~l~~~~KQ~lLe~~d~~~Rl~~l~~~L~~ei~~l~l 361 (691)
...+. ...++ ||.|++|++|+++|++.++||++||+ |+.+|++.++++|.+|+..++-
T Consensus 146 ~~~~l~~-----~~~~~--dp~~lad~ia~~l~l~~~ekQ~lLe~-d~~~Rl~~l~~~L~~e~~~~~~ 205 (210)
T 1zbo_A 146 HIMPMAA-----PFRLD--DCGWVADRWAEMLSLPPADKARLLLL-PPLDRLREIDAVLAADGHALEH 205 (210)
T ss_dssp TTCSBCS-----CCCTT--CHHHHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHHC-------
T ss_pred CCCCCCC-----CCCCC--CHHHHHHHHHHHCCCCHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5446788-----67889--99999999998189999999999958-9999999999999997642100
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=197.08 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=150.6
Q ss_pred HHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCEEEEECCCCCC
Q ss_conf 3676875320899988-885236699986411011324089999999999822124-------88888469998679990
Q 005548 445 VTRNYLDWLTALPWGN-YSDENFDVIRAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVG 516 (691)
Q Consensus 445 ~~~~~l~~~~~lp~~~-~~~~~~~~~~~~~~l~~~i~Gl~~vk~~i~~~l~~~~~~-------~~~~g~~ilL~GPpGtG 516 (691)
..++...++..+||.. .........+.+.+.+++|+|++++|+.+.+.+.+.... ++.+.+++||+||||||
T Consensus 139 ~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtG 218 (428)
T 4b4t_K 139 LHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTG 218 (428)
T ss_dssp ECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTT
T ss_pred EECCHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 52330367763685447513432677899998888516999999999999998739999986799988658888989988
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC-EEEEHHHHHHCCCCC-----C-
Q ss_conf 899999999982479299996964314534016576312224248999997121698-898510001113589-----9-
Q 005548 517 KTSIGRSIARALNRKFFRFSVGGLADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHA-----G- 589 (691)
Q Consensus 517 KTtLakaLA~~l~~~~~~i~~~~~~d~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~-----~- 589 (691)
||++|+++|+.++.+++.++.+.+. ..|+|.....+...|..+....| |+|+||+|.+..... .
T Consensus 219 KT~lakAiA~~~~~~~~~v~~~~l~---------~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~ 289 (428)
T 4b4t_K 219 KTMLVKAVANSTKAAFIRVNGSEFV---------HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSD 289 (428)
T ss_dssp HHHHHHHHHHHHTCEEEEEEGGGTC---------CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCC
T ss_pred HHHHHHHHHHHHCCCEEEEECCHHH---------CCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCC
T ss_conf 8999999999867996999330443---------1454605999999999999739974630022433035567878887
Q ss_pred C----HHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHCC--EEEE-EEEC-CCCHHHHHHHHHHH
Q ss_conf 7----8999995059977999998551255458966999981799999910009--0889-9981-89989999999999
Q 005548 590 D----PASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIA-GYITDEKMHIARDY 661 (691)
Q Consensus 590 ~----~~~~LL~~LD~~~~~~~~d~~~~~~~~~~~viiI~TsN~~~~l~~aLld--R~~i-i~~~-~~~~~e~~~I~~~~ 661 (691)
. ..+.||..+| ++. ...++++|+|||.++.+|+|+++ ||+. |.|+ .++..++..|++.+
T Consensus 290 ~~~~r~l~~lL~~ld---------g~~----~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~ 356 (428)
T 4b4t_K 290 REVQRILIELLTQMD---------GFD----QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTI 356 (428)
T ss_dssp CHHHHHHHHHHHHHH---------HSC----SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------CCC----CCCCEEEEEECCCHHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 189999999999843---------878----7799799996198155696663687515999819999999999999998
Q ss_pred HHHH
Q ss_conf 8687
Q 005548 662 LEKT 665 (691)
Q Consensus 662 l~~~ 665 (691)
+.+.
T Consensus 357 ~~~~ 360 (428)
T 4b4t_K 357 ASKM 360 (428)
T ss_dssp HHSS
T ss_pred HCCC
T ss_conf 5579
No 6
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=182.84 Aligned_cols=175 Identities=26% Similarity=0.359 Sum_probs=140.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9986411011324089999999999822124-------888884699986799908999999999824792999969643
Q 005548 469 IRAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLA 541 (691)
Q Consensus 469 ~~~~~~l~~~i~Gl~~vk~~i~~~l~~~~~~-------~~~~g~~ilL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~ 541 (691)
.+.+.+.+++++|++++|+.+.+.+.++... ++.+++++||+||||||||++|+++|+.++.+++.++.+.+.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 57999988882888999999999999987499999867999888258858999987899999998518885288868951
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC-EEEEHHHHHHCCCCC--CC--------HHHHHHHHCCHHHHHHHHHH
Q ss_conf 14534016576312224248999997121698-898510001113589--97--------89999950599779999985
Q 005548 542 DVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHA--GD--------PASALLELLDPEQNANFLDH 610 (691)
Q Consensus 542 d~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~--~~--------~~~~LL~~LD~~~~~~~~d~ 610 (691)
.+|+|.....+...|..+....| |+||||+|.+..... .+ ..+.||..|| .
T Consensus 220 ---------sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD---------g 281 (405)
T 4b4t_J 220 ---------QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD---------G 281 (405)
T ss_dssp ---------CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH---------T
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH---------C
T ss_conf ---------1335468999999999998709946765334111157788899976899999999999604---------3
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCHHHCC--EEE-EEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 51255458966999981799999910009--088-99981899899999999998687
Q 005548 611 YLDVPIDLSKVLFVCTANVVENIPNPLLD--RME-VIAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 611 ~~~~~~~~~~viiI~TsN~~~~l~~aLld--R~~-ii~~~~~~~~e~~~I~~~~l~~~ 665 (691)
+. ...++++|+|||.++.+|+|+++ ||+ .|.++.|+.+++.+|++.++.+.
T Consensus 282 ~~----~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 335 (405)
T 4b4t_J 282 FE----TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM 335 (405)
T ss_dssp TT----CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS
T ss_pred CC----CCCCEEEEECCCCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 38----8887578812698144899672877676699769969999999999985599
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=179.57 Aligned_cols=174 Identities=26% Similarity=0.356 Sum_probs=137.8
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 986411011324089999999999822124-------8888846999867999089999999998247929999696431
Q 005548 470 RAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLAD 542 (691)
Q Consensus 470 ~~~~~l~~~i~Gl~~vk~~i~~~l~~~~~~-------~~~~g~~ilL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~d 542 (691)
+.+.+.+++++|++++|+.+.+.+.++... ++.+.+++||+||||||||++|+++|+.++.+++.++.+.+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~- 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV- 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC-
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH-
T ss_conf 8979986760957999999999999997499999867999887268779499988999999999959988998644643-
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC-EEEEHHHHHHCCCCCCC----------HHHHHHHHCCHHHHHHHHHHH
Q ss_conf 4534016576312224248999997121698-89851000111358997----------899999505997799999855
Q 005548 543 VAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAGD----------PASALLELLDPEQNANFLDHY 611 (691)
Q Consensus 543 ~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~~----------~~~~LL~~LD~~~~~~~~d~~ 611 (691)
..|+|.....+...+..+....| |+|+||+|.+....... ..+.||..||.
T Consensus 253 --------~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg---------- 314 (434)
T 4b4t_M 253 --------QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG---------- 314 (434)
T ss_dssp --------SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT----------
T ss_pred --------HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC----------
T ss_conf --------13456389999999999986199089603325665225778888746999999999997136----------
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCHHHCC--EEEE-EEECCCCHHHHHHHHHHHHHHH
Q ss_conf 1255458966999981799999910009--0889-9981899899999999998687
Q 005548 612 LDVPIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 612 ~~~~~~~~~viiI~TsN~~~~l~~aLld--R~~i-i~~~~~~~~e~~~I~~~~l~~~ 665 (691)
+. ...++++|+|||.++.+|+|+++ ||+. |.|+.|+.+++.+|++.++.+.
T Consensus 315 --~~-~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (434)
T 4b4t_M 315 --FS-SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM 368 (434)
T ss_dssp --SC-SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS
T ss_pred --CC-CCCCEEEEEECCCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf --68-8899899994899223399671577403899808959999999999985689
No 8
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=178.47 Aligned_cols=179 Identities=27% Similarity=0.377 Sum_probs=139.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 99986411011324089999999999822124-------88888469998679990899999999982479299996964
Q 005548 468 VIRAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 468 ~~~~~~~l~~~i~Gl~~vk~~i~~~l~~~~~~-------~~~~g~~ilL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+.+.+.+++++|++++|+.+.+.+.+.... ++.+.+++||+||||||||++|+++|+.++.+++.++.+.+
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred ECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 33689986005576999999999999998769999986799977788448899963999999999985998799887995
Q ss_pred CHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC-EEEEHHHHHHCCCCC-------CCHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 314534016576312224248999997121698-898510001113589-------978999995059977999998551
Q 005548 541 ADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHA-------GDPASALLELLDPEQNANFLDHYL 612 (691)
Q Consensus 541 ~d~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~-------~~~~~~LL~~LD~~~~~~~~d~~~ 612 (691)
. ..|+|..+..+...|..+....| |+||||+|.+..... ......+.+.|+. +|.+.
T Consensus 253 ~---------sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~------lDg~~ 317 (437)
T 4b4t_I 253 I---------QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ------LDGFD 317 (437)
T ss_dssp C---------CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH------HHHCC
T ss_pred H---------HCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH------HHCCC
T ss_conf 3---------14476699999999999986599189876122203667788877658999999999997------24767
Q ss_pred CCCCCCCCEEEEEEECCCCCCCHHHCC--EEEE-EEECCCCHHHHHHHHHHHHHHH
Q ss_conf 255458966999981799999910009--0889-9981899899999999998687
Q 005548 613 DVPIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 613 ~~~~~~~~viiI~TsN~~~~l~~aLld--R~~i-i~~~~~~~~e~~~I~~~~l~~~ 665 (691)
..+++++|+|||.++.+|+||++ ||+. |.++.|+.+++.+|++.++.+.
T Consensus 318 ----~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~ 369 (437)
T 4b4t_I 318 ----DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM 369 (437)
T ss_dssp ----CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred ----CCCCEEEEEECCCHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf ----8899799995798055599886488602799808969999999999996489
No 9
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=177.61 Aligned_cols=173 Identities=23% Similarity=0.378 Sum_probs=137.3
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 86411011324089999999999822124-------88888469998679990899999999982479299996964314
Q 005548 471 AQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGLADV 543 (691)
Q Consensus 471 ~~~~l~~~i~Gl~~vk~~i~~~l~~~~~~-------~~~~g~~ilL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~~d~ 543 (691)
.+.+.+++++|++++++.+.+.+.++... ++.+.+++||+||||||||++|+++|+.++.+++.++.+++.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~-- 252 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV-- 252 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC--
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHC--
T ss_conf 999896671785999999999999987499999867989787699989999849999999999859998998414620--
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHCCCCC-EEEEHHHHHHCCCCC--C---C--H---HHHHHHHCCHHHHHHHHHHHC
Q ss_conf 534016576312224248999997121698-898510001113589--9---7--8---999995059977999998551
Q 005548 544 AEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHA--G---D--P---ASALLELLDPEQNANFLDHYL 612 (691)
Q Consensus 544 ~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~--~---~--~---~~~LL~~LD~~~~~~~~d~~~ 612 (691)
.+|+|.....+...+..+....| |+|+||+|.+..... + + . .+.||..+| ++.
T Consensus 253 -------sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD---------g~~ 316 (437)
T 4b4t_L 253 -------DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD---------GFD 316 (437)
T ss_dssp -------CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH---------SSS
T ss_pred -------CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------CCC
T ss_conf -------5520178999999999998638964642044333333344788753689999999999834---------666
Q ss_pred CCCCCCCCEEEEEEECCCCCCCHHHCC--EEEE-EEECCCCHHHHHHHHHHHHHHH
Q ss_conf 255458966999981799999910009--0889-9981899899999999998687
Q 005548 613 DVPIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 613 ~~~~~~~~viiI~TsN~~~~l~~aLld--R~~i-i~~~~~~~~e~~~I~~~~l~~~ 665 (691)
...++++|+|||.++.+|+||++ ||+. |.++.|+.+++.+|++.++.+.
T Consensus 317 ----~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (437)
T 4b4t_L 317 ----NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV 368 (437)
T ss_dssp ----CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS
T ss_pred ----CCCCEEEEEECCCCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf ----7798699993399033189782777102001359969999999999986589
No 10
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=177.59 Aligned_cols=179 Identities=24% Similarity=0.349 Sum_probs=139.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 99986411011324089999999999822124-------88888469998679990899999999982479299996964
Q 005548 468 VIRAQKILDEDHYGLNDVKERILEFIAVGKLR-------GISQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFSVGGL 540 (691)
Q Consensus 468 ~~~~~~~l~~~i~Gl~~vk~~i~~~l~~~~~~-------~~~~g~~ilL~GPpGtGKTtLakaLA~~l~~~~~~i~~~~~ 540 (691)
+.+.+.+.+++|+|++++|+.+.+.+.+.... ++.+.+++||+||||||||++|+++|+.++.+++.++.+.+
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHH
T ss_conf 15799998788545999999999999988429999987799999814764899980999999998446898699886995
Q ss_pred CHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC-EEEEHHHHHHCCCCCC--C-----HHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 314534016576312224248999997121698-8985100011135899--7-----8999995059977999998551
Q 005548 541 ADVAEIKGHRRTYIGAMPGKMVQCLKNVGTANP-LVLIDEIDKLGRGHAG--D-----PASALLELLDPEQNANFLDHYL 612 (691)
Q Consensus 541 ~d~~~l~g~~~~~vG~~~~~i~~~l~~~~~~~~-VlllDEidkl~~~~~~--~-----~~~~LL~~LD~~~~~~~~d~~~ 612 (691)
. ..|+|.....+...|..+....| |+|+||+|.+...... . ....+.+.|.. +|.+
T Consensus 280 ~---------sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~------lDg~- 343 (467)
T 4b4t_H 280 V---------QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQ------LDGF- 343 (467)
T ss_dssp C---------CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHH------HHSS-
T ss_pred H---------CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------HHCC-
T ss_conf 0---------26677899999999999876178467522321101355676778627899999999998------6555-
Q ss_pred CCCCCCCCEEEEEEECCCCCCCHHHCC--EEEE-EEECCCCHHHHHHHHHHHHHHH
Q ss_conf 255458966999981799999910009--0889-9981899899999999998687
Q 005548 613 DVPIDLSKVLFVCTANVVENIPNPLLD--RMEV-IAIAGYITDEKMHIARDYLEKT 665 (691)
Q Consensus 613 ~~~~~~~~viiI~TsN~~~~l~~aLld--R~~i-i~~~~~~~~e~~~I~~~~l~~~ 665 (691)
. ...++++|+|||+++.+|+|+++ ||+. |.|+.|+.+++.+|++.++.+.
T Consensus 344 --~-~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~ 396 (467)
T 4b4t_H 344 --D-PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM 396 (467)
T ss_dssp --C-CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred --C-CCCCEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf --7-8883798828789311795463666550799838969999999999985489
Done!