BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005549
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZF9|A Chain A, Crystal Structure Of A Type Iii Cohesin Module From The
Cellulosomal Scae Cell-Surface Anchoring Scaffoldin Of
Ruminococcus Flavefaciens
pdb|2ZF9|B Chain B, Crystal Structure Of A Type Iii Cohesin Module From The
Cellulosomal Scae Cell-Surface Anchoring Scaffoldin Of
Ruminococcus Flavefaciens
pdb|2ZF9|C Chain C, Crystal Structure Of A Type Iii Cohesin Module From The
Cellulosomal Scae Cell-Surface Anchoring Scaffoldin Of
Ruminococcus Flavefaciens
pdb|2ZF9|D Chain D, Crystal Structure Of A Type Iii Cohesin Module From The
Cellulosomal Scae Cell-Surface Anchoring Scaffoldin Of
Ruminococcus Flavefaciens
Length = 194
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 230 ENDALLTEKRETDTMELLDICKATNETDEYFVYDFTVDENNKVENIAWSFPGSIHAYAML 289
E+ AL T R LL++ KA +TD F NN + + WSF + A A
Sbjct: 83 EDGALATAGRAA---RLLELKKAEADTDNSFFTATGSSTNNGKDGVLWSFVLQVPADAQP 139
Query: 290 GDVVYFDTTYRSIT 303
GD Y+S T
Sbjct: 140 GDKYDVQVAYQSRT 153
>pdb|3KR9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase
pdb|3KU1|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|E Chain E, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|F Chain F, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|G Chain G, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|H Chain H, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
Length = 225
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 132 KMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQERILLLSKAGFP 191
K ++ EVVEG Q V NV H L E QVR +E DQ ++ ++ G
Sbjct: 40 KSAIAGEVVEGPYQSAV---KNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGMG-- 94
Query: 192 IHRIVKVLELEKGIQGGQLPFLER 215
R++ + LE+G+ G+L +ER
Sbjct: 95 -GRLIARI-LEEGL--GKLANVER 114
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 168 LPAYRKIQEADQERILLLSKAGFP------IHRIVKVLELEKGIQGGQLPFLERDVRNFV 221
LP +++ +I+L+S G P + + V E KG+ G ++ FL V V
Sbjct: 46 LPTINHLKKEGASKIILISHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEV 105
Query: 222 QNRRRAVQENDALLTE 237
+++ A +EN +L E
Sbjct: 106 EDKINAAKENSVILLE 121
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 168 LPAYRKIQEADQERILLLSKAGFP------IHRIVKVLELEKGIQGGQLPFLERDVRNFV 221
LP +++ +I+L+S G P + + V E KG+ G ++ FL V V
Sbjct: 52 LPTINHLKKEGASKIILISHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEV 111
Query: 222 QNRRRAVQENDALLTE 237
+++ A +EN +L E
Sbjct: 112 EDKINAAKENSVILLE 127
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 168 LPAYRKIQEADQERILLLSKAGFP------IHRIVKVLELEKGIQGGQLPFLERDVRNFV 221
LP +++ +I+L+S G P + + V E KG+ G ++ FL V V
Sbjct: 53 LPTINHLKKEGASKIILISHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEV 112
Query: 222 QNRRRAVQENDALLTE 237
+++ A +EN +L E
Sbjct: 113 EDKINAAKENSVILLE 128
>pdb|3IZB|Y Chain Y, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|R Chain R, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|R Chain R, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|CC Chain c, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|CC Chain c, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 67
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 186 SKAGFPIHRIVKVLELEKGIQGG----QLPFLERDVRNFVQNRRRAVQENDALLTEKRET 241
+K + +++KVL G +GG ++ FLE R V+N + V+END L+ + E
Sbjct: 3 NKTPVTLAKVIKVLG-RTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESER 61
Query: 242 DTMEL 246
+ L
Sbjct: 62 EARRL 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,741,923
Number of Sequences: 62578
Number of extensions: 848892
Number of successful extensions: 1966
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1965
Number of HSP's gapped (non-prelim): 6
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)