Query 005550
Match_columns 691
No_of_seqs 272 out of 1675
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 01:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03606 non_repeat_PQQ dehyd 100.0 5E-60 1.1E-64 521.9 39.3 348 196-629 15-424 (454)
2 PF07995 GSDH: Glucose / Sorbo 100.0 2.8E-60 6E-65 508.7 31.8 322 212-634 5-331 (331)
3 COG2133 Glucose/sorbosone dehy 100.0 1.2E-48 2.7E-53 423.5 34.5 334 198-638 54-397 (399)
4 TIGR02604 Piru_Ver_Nterm putat 100.0 6.1E-33 1.3E-37 301.2 32.9 319 200-638 1-366 (367)
5 PF03024 Folate_rec: Folate re 99.2 2.4E-12 5.2E-17 126.3 0.0 91 26-133 1-113 (167)
6 PF08450 SGL: SMP-30/Gluconola 98.4 0.0003 6.6E-09 72.0 27.0 237 213-629 4-245 (246)
7 PLN02919 haloacid dehalogenase 97.9 0.0075 1.6E-07 75.0 30.9 71 557-638 815-887 (1057)
8 PF08450 SGL: SMP-30/Gluconola 97.6 0.0021 4.6E-08 65.8 16.5 147 212-474 89-244 (246)
9 PF10282 Lactonase: Lactonase, 97.1 0.028 6E-07 61.1 18.1 166 212-481 147-317 (345)
10 PLN02919 haloacid dehalogenase 95.2 0.97 2.1E-05 56.8 19.6 32 451-484 855-886 (1057)
11 KOG4659 Uncharacterized conser 93.6 1.7 3.8E-05 54.3 15.9 161 448-641 397-564 (1899)
12 COG3386 Gluconolactonase [Carb 93.5 2.7 5.9E-05 45.7 16.1 77 370-483 114-190 (307)
13 TIGR02604 Piru_Ver_Nterm putat 93.0 1.1 2.3E-05 49.4 12.4 78 202-291 63-143 (367)
14 PRK11028 6-phosphogluconolacto 92.8 15 0.00034 39.0 20.7 64 212-289 129-193 (330)
15 PRK11028 6-phosphogluconolacto 92.4 11 0.00024 40.1 18.9 31 453-484 124-154 (330)
16 COG2706 3-carboxymuconate cycl 92.3 4.8 0.00011 44.3 15.7 160 213-477 149-312 (346)
17 TIGR03866 PQQ_ABC_repeats PQQ- 92.2 12 0.00026 37.8 18.0 26 212-238 160-186 (300)
18 PF06977 SdiA-regulated: SdiA- 90.2 5.9 0.00013 41.8 13.7 79 200-288 53-135 (248)
19 PF10282 Lactonase: Lactonase, 89.1 7.1 0.00015 42.5 13.8 71 208-289 190-263 (345)
20 TIGR03606 non_repeat_PQQ dehyd 89.1 8.2 0.00018 44.3 14.6 40 444-488 19-58 (454)
21 COG4257 Vgb Streptogramin lyas 87.5 25 0.00053 38.2 15.8 72 361-479 226-298 (353)
22 COG3386 Gluconolactonase [Carb 86.7 19 0.00041 39.2 15.1 145 198-415 150-299 (307)
23 TIGR02658 TTQ_MADH_Hv methylam 84.2 55 0.0012 36.5 17.4 75 365-478 244-322 (352)
24 COG4257 Vgb Streptogramin lyas 84.0 38 0.00082 36.8 15.1 40 200-242 52-93 (353)
25 KOG0282 mRNA splicing factor [ 83.8 8.3 0.00018 44.0 10.7 115 158-292 239-363 (503)
26 COG4946 Uncharacterized protei 83.2 21 0.00045 41.0 13.5 68 200-290 391-461 (668)
27 PF01436 NHL: NHL repeat; Int 80.0 2.2 4.9E-05 29.7 3.1 23 454-478 1-23 (28)
28 PF01436 NHL: NHL repeat; Int 80.0 3.6 7.8E-05 28.7 4.1 24 611-634 2-27 (28)
29 PF03088 Str_synth: Strictosid 77.6 6.6 0.00014 35.2 6.1 77 372-479 3-80 (89)
30 COG3391 Uncharacterized conser 76.9 1.3E+02 0.0028 33.5 20.1 67 202-289 108-178 (381)
31 PRK04043 tolB translocation pr 76.1 1.4E+02 0.0031 33.7 21.2 43 196-238 174-220 (419)
32 TIGR02658 TTQ_MADH_Hv methylam 74.7 22 0.00047 39.6 10.4 21 366-387 298-320 (352)
33 PF06977 SdiA-regulated: SdiA- 72.9 20 0.00042 38.0 9.2 67 212-289 121-189 (248)
34 KOG0315 G-protein beta subunit 72.6 1.3E+02 0.0029 32.3 14.8 27 213-240 129-155 (311)
35 PF05787 DUF839: Bacterial pro 72.4 18 0.00038 42.4 9.5 101 371-477 354-456 (524)
36 smart00135 LY Low-density lipo 72.4 6.2 0.00013 28.7 3.9 34 449-483 3-36 (43)
37 PF02239 Cytochrom_D1: Cytochr 71.4 1.7E+02 0.0038 32.5 20.4 68 202-290 28-97 (369)
38 COG3204 Uncharacterized protei 71.0 1.3E+02 0.0029 32.9 14.8 67 213-289 133-199 (316)
39 PF07494 Reg_prop: Two compone 69.8 5.7 0.00012 26.8 2.9 19 611-629 5-23 (24)
40 cd00200 WD40 WD40 domain, foun 63.4 1.3E+02 0.0027 29.0 12.2 58 212-290 181-238 (289)
41 KOG4659 Uncharacterized conser 62.7 65 0.0014 41.4 11.6 74 197-289 476-551 (1899)
42 PTZ00420 coronin; Provisional 62.1 1.7E+02 0.0036 34.8 14.8 59 212-278 78-136 (568)
43 PF07995 GSDH: Glucose / Sorbo 60.2 36 0.00078 37.1 8.5 67 212-290 117-200 (331)
44 PF13449 Phytase-like: Esteras 60.2 1.6E+02 0.0036 31.9 13.5 46 367-415 145-193 (326)
45 PF05787 DUF839: Bacterial pro 59.9 1.6E+02 0.0034 34.7 14.0 21 270-293 352-372 (524)
46 TIGR03866 PQQ_ABC_repeats PQQ- 58.9 2E+02 0.0044 28.9 19.6 26 212-238 76-102 (300)
47 COG2706 3-carboxymuconate cycl 58.6 2.2E+02 0.0048 31.7 13.9 108 168-287 147-260 (346)
48 KOG0641 WD40 repeat protein [G 57.3 1.1E+02 0.0024 32.4 10.7 22 265-290 30-51 (350)
49 PTZ00421 coronin; Provisional 54.9 2.3E+02 0.0049 33.0 14.2 57 212-278 79-136 (493)
50 KOG0289 mRNA splicing factor [ 51.4 75 0.0016 36.3 9.0 86 170-290 317-408 (506)
51 KOG2055 WD40 repeat protein [G 51.1 2E+02 0.0044 33.2 12.3 26 212-238 348-373 (514)
52 PRK01742 tolB translocation pr 50.8 3E+02 0.0066 30.9 14.1 40 198-238 191-235 (429)
53 PRK02888 nitrous-oxide reducta 50.3 1E+02 0.0022 37.0 10.3 76 204-291 315-394 (635)
54 KOG2055 WD40 repeat protein [G 49.8 1.3E+02 0.0029 34.6 10.6 27 212-238 261-287 (514)
55 TIGR02800 propeller_TolB tol-p 48.8 3.9E+02 0.0085 29.1 19.8 38 200-238 179-221 (417)
56 PRK02889 tolB translocation pr 47.9 4.5E+02 0.0097 29.5 20.6 26 212-238 199-227 (427)
57 KOG1445 Tumor-specific antigen 46.0 1.5E+02 0.0032 35.7 10.4 51 191-242 610-661 (1012)
58 PTZ00421 coronin; Provisional 45.9 3.2E+02 0.007 31.8 13.6 57 212-288 129-185 (493)
59 PRK02889 tolB translocation pr 45.7 3.5E+02 0.0076 30.4 13.6 26 212-237 287-314 (427)
60 PF14517 Tachylectin: Tachylec 45.7 80 0.0017 33.2 7.7 23 365-388 128-150 (229)
61 TIGR03118 PEPCTERM_chp_1 conse 45.6 14 0.0003 40.4 2.3 30 448-479 16-45 (336)
62 PF00400 WD40: WD domain, G-be 44.3 90 0.002 22.0 5.8 25 212-237 15-39 (39)
63 TIGR03074 PQQ_membr_DH membran 41.4 7.8E+02 0.017 30.5 19.0 92 371-472 379-484 (764)
64 COG2133 Glucose/sorbosone dehy 41.3 65 0.0014 36.5 6.8 65 212-290 180-258 (399)
65 KOG0266 WD40 repeat-containing 40.6 5.7E+02 0.012 29.1 14.4 69 200-290 236-307 (456)
66 KOG0295 WD40 repeat-containing 40.0 2.4E+02 0.0052 31.8 10.5 96 218-388 301-396 (406)
67 PF14870 PSII_BNR: Photosynthe 39.9 85 0.0018 34.3 7.2 59 212-287 190-248 (302)
68 PRK04792 tolB translocation pr 39.5 6.2E+02 0.013 28.7 19.4 41 198-238 205-249 (448)
69 TIGR03032 conserved hypothetic 39.1 1.3E+02 0.0029 33.3 8.4 104 163-293 147-263 (335)
70 PRK04922 tolB translocation pr 38.7 5.7E+02 0.012 28.6 13.9 27 212-238 295-323 (433)
71 PRK03629 tolB translocation pr 38.5 6.2E+02 0.013 28.5 22.0 40 199-238 187-230 (429)
72 PRK00178 tolB translocation pr 37.9 6E+02 0.013 28.2 20.6 40 198-238 186-230 (430)
73 KOG0266 WD40 repeat-containing 37.2 3.7E+02 0.0081 30.6 12.2 59 212-291 207-266 (456)
74 PRK01029 tolB translocation pr 37.1 6.6E+02 0.014 28.4 18.6 41 198-238 172-218 (428)
75 KOG0272 U4/U6 small nuclear ri 36.8 4E+02 0.0086 30.6 11.7 55 212-290 307-364 (459)
76 KOG3342 Signal peptidase I [In 36.4 67 0.0015 31.9 5.1 71 536-629 44-115 (180)
77 COG3211 PhoX Predicted phospha 36.2 3.7E+02 0.008 32.1 11.7 20 271-293 420-439 (616)
78 PRK01029 tolB translocation pr 35.5 7E+02 0.015 28.2 14.8 27 212-238 284-312 (428)
79 TIGR03803 Gloeo_Verruco Gloeo_ 34.7 61 0.0013 24.1 3.5 26 378-415 1-26 (34)
80 PRK05137 tolB translocation pr 34.4 7E+02 0.015 27.9 21.5 40 199-238 190-233 (435)
81 KOG0263 Transcription initiati 34.3 2.4E+02 0.0052 34.3 10.1 27 354-388 569-597 (707)
82 KOG1407 WD40 repeat protein [F 33.4 4.5E+02 0.0097 28.6 10.9 37 200-237 97-134 (313)
83 PF08662 eIF2A: Eukaryotic tra 32.5 4.1E+02 0.0089 26.6 10.4 84 200-335 92-179 (194)
84 PRK04792 tolB translocation pr 32.1 8E+02 0.017 27.8 17.4 26 212-238 265-293 (448)
85 PRK04922 tolB translocation pr 28.6 8.7E+02 0.019 27.2 21.4 40 199-238 192-235 (433)
86 KOG2110 Uncharacterized conser 28.6 5E+02 0.011 29.4 10.7 29 366-412 171-201 (391)
87 PRK03629 tolB translocation pr 27.1 9.4E+02 0.02 27.1 20.4 26 212-238 246-274 (429)
88 PRK05137 tolB translocation pr 26.6 9.4E+02 0.02 26.9 19.4 26 212-238 249-277 (435)
89 KOG0289 mRNA splicing factor [ 26.3 6.3E+02 0.014 29.3 11.1 23 266-292 346-368 (506)
90 cd00200 WD40 WD40 domain, foun 26.0 5.8E+02 0.013 24.3 13.0 50 212-278 55-104 (289)
91 PF00058 Ldl_recept_b: Low-den 25.3 92 0.002 23.6 3.3 31 406-464 12-42 (42)
92 COG3211 PhoX Predicted phospha 25.2 2.4E+02 0.0052 33.6 7.9 99 371-478 421-521 (616)
93 KOG0271 Notchless-like WD40 re 24.5 5E+02 0.011 29.7 9.8 53 212-280 161-213 (480)
94 KOG0272 U4/U6 small nuclear ri 24.5 2.7E+02 0.0058 31.9 7.9 61 212-292 221-282 (459)
95 PF06739 SBBP: Beta-propeller 23.8 70 0.0015 24.0 2.3 17 612-628 14-30 (38)
96 PTZ00420 coronin; Provisional 23.8 1.2E+03 0.025 27.9 13.4 54 212-287 129-183 (568)
97 PRK01742 tolB translocation pr 23.4 7.8E+02 0.017 27.6 11.6 17 370-387 375-391 (429)
98 TIGR03075 PQQ_enz_alc_DH PQQ-d 21.8 2.9E+02 0.0064 32.3 8.0 85 370-471 237-339 (527)
99 PF10313 DUF2415: Uncharacteri 21.6 1.8E+02 0.004 22.8 4.2 27 212-238 4-32 (43)
100 PF07676 PD40: WD40-like Beta 21.6 2.2E+02 0.0047 20.5 4.6 19 212-230 12-30 (39)
101 PF03022 MRJP: Major royal jel 21.0 1E+03 0.023 25.4 14.1 201 213-495 5-236 (287)
102 COG3292 Predicted periplasmic 20.4 1E+02 0.0022 36.6 3.7 41 610-650 246-286 (671)
103 KOG0279 G protein beta subunit 20.1 1.1E+03 0.024 25.9 11.1 50 212-278 67-116 (315)
104 TIGR03746 conj_TIGR03746 integ 20.1 67 0.0015 33.1 2.0 12 455-466 183-194 (202)
No 1
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=100.00 E-value=5e-60 Score=521.92 Aligned_cols=348 Identities=23% Similarity=0.427 Sum_probs=258.3
Q ss_pred CCCCCcEEEEEecCce--eeEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceee
Q 005550 196 NPPQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMG 272 (691)
Q Consensus 196 ~~p~G~~le~va~Gl~--~~m~~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLG 272 (691)
+.|.+|++|+|++||. |.|+++||| ||||+|| .|+|++++ ++++. .++++++...+...+|+||||
T Consensus 15 ~~p~~f~~~~va~GL~~Pw~maflPDG--~llVtER~~G~I~~v~-~~~~~--------~~~~~~l~~v~~~~ge~GLlg 83 (454)
T TIGR03606 15 AASENFDKKVLLSGLNKPWALLWGPDN--QLWVTERATGKILRVN-PETGE--------VKVVFTLPEIVNDAQHNGLLG 83 (454)
T ss_pred cCCCCcEEEEEECCCCCceEEEEcCCC--eEEEEEecCCEEEEEe-CCCCc--------eeeeecCCceeccCCCCceee
Confidence 4588999999999998 999999999 8999999 69999985 33222 233456643333347999999
Q ss_pred eeeCCCC---CCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccC
Q 005550 273 MAFHPNF---AKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRA 349 (691)
Q Consensus 273 iAfhPdF---~~NG~~YvsYs~~~~~~~~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t~~~~~~~~s~~~~~ 349 (691)
|||||+| ++|++|||+|+....... . ....+|+||+++... .
T Consensus 84 lal~PdF~~~~~n~~lYvsyt~~~~~~~-------------------------~--~~~~~I~R~~l~~~~--------~ 128 (454)
T TIGR03606 84 LALHPDFMQEKGNPYVYISYTYKNGDKE-------------------------L--PNHTKIVRYTYDKST--------Q 128 (454)
T ss_pred EEECCCccccCCCcEEEEEEeccCCCCC-------------------------c--cCCcEEEEEEecCCC--------C
Confidence 9999999 999999999996422100 0 013599999985431 1
Q ss_pred CCCCeEEEEEecCCC-CCccccceEEcCCCCeEEEEecCCCCCC-----CCc----------CccccCCCCCeeEEEEec
Q 005550 350 KPSEVRRIFTMGLSF-NGHHGGQLLFGPTDGYMYFMMGDGGGTA-----DPY----------NFSQNKKSLLGKITRLDV 413 (691)
Q Consensus 350 ~~~~~~~Il~~~~P~-~~H~GG~L~FGP~DG~LYis~GDgg~~~-----DP~----------~~aQn~~sl~GKILRIdv 413 (691)
.+.++++||+ ++|. ..|+|++|+|+| ||+|||++||++... .|. .++||+++++|||||||+
T Consensus 129 ~l~~~~~Il~-~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~ 206 (454)
T TIGR03606 129 TLEKPVDLLA-GLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNL 206 (454)
T ss_pred ccccceEEEe-cCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcC
Confidence 2345677875 5665 579999999999 999999999997421 120 123588999999999999
Q ss_pred CCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCeEEEecccccceeeecCCCCCeEEEEEccCCCceeEEEeccCCCCC
Q 005550 414 DNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYG 493 (691)
Q Consensus 414 Dg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~afDp~tg~~l~~~DvG~d~~EEIn~I~kG~NYG 493 (691)
|| +||+||||++ ++++||||||||||||++||| +| +||++|||++.+||||+|++|+|||
T Consensus 207 DG----------------siP~dNPf~~--g~~~eIyA~G~RNp~Gla~dp-~G-~Lw~~e~Gp~~~DEiN~I~~G~NYG 266 (454)
T TIGR03606 207 DG----------------SIPKDNPSIN--GVVSHIFTYGHRNPQGLAFTP-DG-TLYASEQGPNSDDELNIIVKGGNYG 266 (454)
T ss_pred CC----------------CCCCCCCccC--CCcceEEEEeccccceeEECC-CC-CEEEEecCCCCCcEEEEeccCCcCC
Confidence 99 7999999984 678999999999999999999 67 5999999999999999999999999
Q ss_pred cccccCCC--------cCCCCC-----------CCCCC-----CCCCCCCCCCceee-c------c-CCccCC-----CC
Q 005550 494 WRLYEGPY--------LFTPLE-----------TPGGI-----TPLNSVSPIFPVLG-Y------N-HSEVNK-----KE 536 (691)
Q Consensus 494 WP~~eG~~--------~~~p~~-----------~p~~~-----t~~~~~~~~~Pi~~-y------~-H~~~~~-----~~ 536 (691)
||.++|.. .|.... .+.+. +......++.|++. | . |.-... ..
T Consensus 267 WP~~~G~~~~~~~~~~~ys~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (454)
T TIGR03606 267 WPNVAGYKDDSGYVYANYSAAANKSIKTLAQNGIPAGVPVTKESEWTAKNFVPPLKTLYTVQDTYNYNDATCGEMTYICW 346 (454)
T ss_pred CCceeecCccccccccccccccccccccccccccCcCccccccccccCccccCCceeccccccccccccccccccccccC
Confidence 99999732 222110 01010 00111258899974 2 0 110000 13
Q ss_pred CCccccceeeec--CCCCcccCCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCCCCCCCCccc
Q 005550 537 GSASITGGYFYR--SMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPSLGYIY 614 (691)
Q Consensus 537 Gs~S~tGG~vYr--G~~fP~l~G~y~fgD~~sg~lw~~~~~p~~~G~~~~~~i~f~c~~~~P~~c~~~~g~~~~~~gri~ 614 (691)
++.||+|+.||+ |++||+|+|.+|++-+..++|+++.++.+. ++.+..+.. ++...+|||
T Consensus 347 psiapsg~~~y~~~g~~~p~w~g~llv~~L~~~~l~r~~l~~~~-~~v~~~~~~-----------------~~~~~~RiR 408 (454)
T TIGR03606 347 PTIAPSSAYYYKGGEKGITGWENSLLIPSLKRGVIYRIKLDPDY-STVYGDAVP-----------------MFKTNNRYR 408 (454)
T ss_pred CCcCCceeEEEecCcccCcccCCCEEEEEcCCCeEEEEEecCCc-ceecceeEE-----------------eecCCCeeE
Confidence 678999999999 699999999999999999999999886431 111101111 111257999
Q ss_pred eEEEcCCC-cEEEEeC
Q 005550 615 SFGEDNRK-DIFILTS 629 (691)
Q Consensus 615 sf~ed~dG-eLYvlts 629 (691)
++.++||| .|||+++
T Consensus 409 dv~~~pDg~~iy~~td 424 (454)
T TIGR03606 409 DVIASPDGNVLYVATD 424 (454)
T ss_pred EEEECCCCCEEEEEEc
Confidence 99999997 9999997
No 2
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=100.00 E-value=2.8e-60 Score=508.72 Aligned_cols=322 Identities=34% Similarity=0.593 Sum_probs=238.1
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEee
Q 005550 212 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNC 291 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs~ 291 (691)
|+|+++||| ||||+||.|+||+++ .+++. ..++.++. +|...+|+|||||||||+|.+|++|||+|+.
T Consensus 5 ~~~a~~pdG--~l~v~e~~G~i~~~~--~~g~~-------~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 5 RSMAFLPDG--RLLVAERSGRIWVVD--KDGSL-------KTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp EEEEEETTS--CEEEEETTTEEEEEE--TTTEE-------CEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred eEEEEeCCC--cEEEEeCCceEEEEe--CCCcC-------cceecccc-cccccccCCcccceeccccCCCCEEEEEEEc
Confidence 899999998 899999999999986 33432 12344543 6777899999999999999999999999997
Q ss_pred cCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEEecCCC---CCcc
Q 005550 292 DKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSF---NGHH 368 (691)
Q Consensus 292 ~~~~~~~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t~~~~~~~~s~~~~~~~~~~~~Il~~~~P~---~~H~ 368 (691)
..... .....+|+||+.+... ....+.++|++ ++|. ..|+
T Consensus 73 ~~~~~----------------------------~~~~~~v~r~~~~~~~--------~~~~~~~~l~~-~~p~~~~~~H~ 115 (331)
T PF07995_consen 73 ADEDG----------------------------GDNDNRVVRFTLSDGD--------GDLSSEEVLVT-GLPDTSSGNHN 115 (331)
T ss_dssp E-TSS----------------------------SSEEEEEEEEEEETTS--------CEEEEEEEEEE-EEES-CSSSS-
T ss_pred ccCCC----------------------------CCcceeeEEEeccCCc--------cccccceEEEE-EeCCCCCCCCC
Confidence 52110 1235799999986541 12335566765 4454 6799
Q ss_pred ccceEEcCCCCeEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCe
Q 005550 369 GGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPE 448 (691)
Q Consensus 369 GG~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pE 448 (691)
|++|.|+| ||+|||++||.++. ..+|+++++.||||||++|| +||.||||++.++..+|
T Consensus 116 g~~l~fgp-DG~LYvs~G~~~~~----~~~~~~~~~~G~ilri~~dG----------------~~p~dnP~~~~~~~~~~ 174 (331)
T PF07995_consen 116 GGGLAFGP-DGKLYVSVGDGGND----DNAQDPNSLRGKILRIDPDG----------------SIPADNPFVGDDGADSE 174 (331)
T ss_dssp EEEEEE-T-TSEEEEEEB-TTTG----GGGCSTTSSTTEEEEEETTS----------------SB-TTSTTTTSTTSTTT
T ss_pred CccccCCC-CCcEEEEeCCCCCc----ccccccccccceEEEecccC----------------cCCCCCccccCCCceEE
Confidence 99999999 99999999999872 57999999999999999999 79999999998889999
Q ss_pred EEEecccccceeeecCCCCCeEEEEEccCCCceeEEEeccCCCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCceeecc
Q 005550 449 IWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEGPYLFTPLETPGGITPLNSVSPIFPVLGYN 528 (691)
Q Consensus 449 I~A~GlRNP~r~afDp~tg~~l~~~DvG~d~~EEIn~I~kG~NYGWP~~eG~~~~~p~~~p~~~t~~~~~~~~~Pi~~y~ 528 (691)
|||+|||||+||+|||.+| +||++|||++.+||||+|++|+|||||.+++...+.... .... .....++.|++.|.
T Consensus 175 i~A~GlRN~~~~~~d~~tg-~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~--~~~~-~~~~~~~~P~~~~~ 250 (331)
T PF07995_consen 175 IYAYGLRNPFGLAFDPNTG-RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPP--IGDA-PSCPGFVPPVFAYP 250 (331)
T ss_dssp EEEE--SEEEEEEEETTTT-EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS---ECTG-SS-TTS---SEEET
T ss_pred EEEeCCCccccEEEECCCC-cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCc--cccc-cCCCCcCccceeec
Confidence 9999999999999999988 699999999999999999999999999999877654321 0011 11235789999996
Q ss_pred CCccCCCCCCccccceeeecCCCCcccCCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCCCCC
Q 005550 529 HSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLP 608 (691)
Q Consensus 529 H~~~~~~~Gs~S~tGG~vYrG~~fP~l~G~y~fgD~~sg~lw~~~~~p~~~G~~~~~~i~f~c~~~~P~~c~~~~g~~~~ 608 (691)
|+ .||+|+.||+|.+||+|+|.||++|+..++||++..+.. +.....+ .| . ..
T Consensus 251 ~~--------~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~--~~~~~~~-~~------------~----~~ 303 (331)
T PF07995_consen 251 PH--------SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED--GSVTEEE-EF------------L----GG 303 (331)
T ss_dssp TT----------EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT--EEEEEEE-EE------------C----TT
T ss_pred Cc--------cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC--CCccceE-Ec------------c----cc
Confidence 64 899999999999999999999999999999999988532 3222111 11 1 12
Q ss_pred CCCccceEEEcCCCcEEEEeC--CeEEE
Q 005550 609 SLGYIYSFGEDNRKDIFILTS--DGVYR 634 (691)
Q Consensus 609 ~~gri~sf~ed~dGeLYvlts--~gIyR 634 (691)
..+||+++++++||+|||+++ +.|||
T Consensus 304 ~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 304 FGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp SSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred CCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 245999999999999999987 46998
No 3
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=423.47 Aligned_cols=334 Identities=26% Similarity=0.417 Sum_probs=259.9
Q ss_pred CCCcEEEEEecCce--eeEEEcCCCCceEEEEecC-ceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeee
Q 005550 198 PQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQE-GKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMA 274 (691)
Q Consensus 198 p~G~~le~va~Gl~--~~m~~~pDGs~RlfV~eq~-G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiA 274 (691)
+.++.++.++.||. |.|+..||| +++|+|+. |.|.++. ..+. . .+-+.-...|...++.|+|++|
T Consensus 54 ~~~~~~~~~a~gLe~p~~~~~lP~G--~~~v~er~~G~l~~i~--~g~~---~-----~~~~~~~~~~~~~~~~Gll~~a 121 (399)
T COG2133 54 AKGVSVEVVAQGLEHPWGLARLPDG--VLLVTERPTGRLRLIS--DGGS---A-----SPPVSTVPIVLLRGQGGLLDIA 121 (399)
T ss_pred ccceecccccccccCchhheecCCc--eEEEEccCCccEEEec--CCCc---c-----cccccccceEEeccCCCccceE
Confidence 35799999999988 999999999 89999998 9888763 2221 1 1222223456678899999999
Q ss_pred eCCCCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCe
Q 005550 275 FHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEV 354 (691)
Q Consensus 275 fhPdF~~NG~~YvsYs~~~~~~~~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t~~~~~~~~s~~~~~~~~~~ 354 (691)
++|+|+++...|++|++...... ..+++++...... ..+.++.
T Consensus 122 l~~~fa~~~~~~~~~a~~~~~~~-----------------------------~~n~~~~~~~~~g--------~~~l~~~ 164 (399)
T COG2133 122 LSPDFAQGRLVYFGISEPGGGLY-----------------------------VANRVAIGRLPGG--------DTKLSEP 164 (399)
T ss_pred ecccccccceeeeEEEeecCCce-----------------------------EEEEEEEEEcCCC--------ccccccc
Confidence 99999999999999987543210 1234444443321 2345677
Q ss_pred EEEEEecCCCC-CccccceEEcCCCCeEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCC
Q 005550 355 RRIFTMGLSFN-GHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSI 433 (691)
Q Consensus 355 ~~Il~~~~P~~-~H~GG~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsI 433 (691)
++|++ ++|.. .|+|++|+|+| ||+|||++||.++. ..+|+..++.|||+|++.++ .|
T Consensus 165 ~~i~~-~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~----~~aq~~~~~~Gk~~r~~~a~----------------~~ 222 (399)
T COG2133 165 KVIFR-GIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDP----ALAQDNVSLAGKVLRIDRAG----------------II 222 (399)
T ss_pred cEEee-cCCCCCCcCcccEEECC-CCcEEEEeCCCCCc----ccccCccccccceeeeccCc----------------cc
Confidence 88886 78976 58899999999 99999999998754 47999999999999999998 79
Q ss_pred CCCCCCCCCCCCCCeEEEecccccceeeecCCCCCeEEEEEccC---CCceeEEEeccCCCCCcccccCCCcCCCCCCCC
Q 005550 434 PKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQ---DVYEEVDIITRGGNYGWRLYEGPYLFTPLETPG 510 (691)
Q Consensus 434 P~DNPF~~~~~~~pEI~A~GlRNP~r~afDp~tg~~l~~~DvG~---d~~EEIn~I~kG~NYGWP~~eG~~~~~p~~~p~ 510 (691)
|.||||.+ +||||+|||||++++|||.||. ||++|||+ -..||||+|++|+|||||+++....+++...+.
T Consensus 223 ~~d~p~~~-----~~i~s~G~RN~qGl~w~P~tg~-Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~ 296 (399)
T COG2133 223 PADNPFPN-----SEIWSYGHRNPQGLAWHPVTGA-LWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPD 296 (399)
T ss_pred ccCCCCCC-----cceEEeccCCccceeecCCCCc-EEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCC
Confidence 99999975 7999999999999999999994 99999999 568999999999999999998776676654333
Q ss_pred CCCCCCCCCCCCceeeccCCccCCCCCCccccceeeecCCCCcccCCcEEEEEeccceeEEeecCCCCCCCeeEEEeeee
Q 005550 511 GITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFS 590 (691)
Q Consensus 511 ~~t~~~~~~~~~Pi~~y~H~~~~~~~Gs~S~tGG~vYrG~~fP~l~G~y~fgD~~sg~lw~~~~~p~~~G~~~~~~i~f~ 590 (691)
.+.. ...+.|++.| ..|.|++|+.||+|+.||+|+|..|++-+.+-. .+...+ .|++++....|
T Consensus 297 -~~~~--~~~~~p~~~~--------~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~--~~~~~~--~g~~~~~~~~f- 360 (399)
T COG2133 297 -GTVV--AGAIQPVYTW--------APHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWP--VLRLRP--DGNYKVVLTGF- 360 (399)
T ss_pred -Cccc--ccccCCceee--------ccccccceeEEecCCcCccccCcEEEEeeccee--EEEecc--CCCcceEEEEE-
Confidence 2222 3588999999 455899999999999999999999999885532 233333 35554332221
Q ss_pred cCCCCcccccccCCCCCCCCCccceEEEcCCCcEEEEeCC---eEEEEecC
Q 005550 591 CARDSPIQCKVLPGNDLPSLGYIYSFGEDNRKDIFILTSD---GVYRVVRP 638 (691)
Q Consensus 591 c~~~~P~~c~~~~g~~~~~~gri~sf~ed~dGeLYvlts~---gIyRIv~p 638 (691)
+.+ ..-|||+++.+++||.|||+++. .||||.+-
T Consensus 361 -----------l~~---d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 361 -----------LSG---DLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred -----------Eec---CCCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence 111 11379999999999999999974 69999864
No 4
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=100.00 E-value=6.1e-33 Score=301.16 Aligned_cols=319 Identities=18% Similarity=0.247 Sum_probs=220.9
Q ss_pred CcEEEEEecC--ce--eeEEEcCCCCceEEEEec------------Cc-eEEEEEccCCCCCceeeecCCCCCcCCccce
Q 005550 200 GLCLEKIGNG--SY--LNMVAHPDGSNRAFFSNQ------------EG-KIWLATIPEQGLGETMELDASSPFADLTDEV 262 (691)
Q Consensus 200 G~~le~va~G--l~--~~m~~~pDGs~RlfV~eq------------~G-~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V 262 (691)
||++|.+|++ +. ++|++.++| ||||+|. .| +|+++. +.+++|+. |+. .|
T Consensus 1 Gf~~~l~A~~p~~~~P~~ia~d~~G--~l~V~e~~~y~~~~~~~~~~~~rI~~l~-d~dgdG~~---d~~--------~v 66 (367)
T TIGR02604 1 GFKVTLFAAEPLLRNPIAVCFDERG--RLWVAEGITYSRPAGRQGPLGDRILILE-DADGDGKY---DKS--------NV 66 (367)
T ss_pred CcEEEEEECCCccCCCceeeECCCC--CEEEEeCCcCCCCCCCCCCCCCEEEEEE-cCCCCCCc---cee--------EE
Confidence 7999999987 55 999999999 8999983 34 898886 34455532 222 23
Q ss_pred eeCCCCceeeeeeCCCCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCC
Q 005550 263 HFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASE 342 (691)
Q Consensus 263 ~~~~e~GLLGiAfhPdF~~NG~~YvsYs~~~~~~~~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t~~~~~~~ 342 (691)
..++.....||++++ +| +||+-. ..|.+|+..+..
T Consensus 67 fa~~l~~p~Gi~~~~----~G-lyV~~~--------------------------------------~~i~~~~d~~gd-- 101 (367)
T TIGR02604 67 FAEELSMVTGLAVAV----GG-VYVATP--------------------------------------PDILFLRDKDGD-- 101 (367)
T ss_pred eecCCCCccceeEec----CC-EEEeCC--------------------------------------CeEEEEeCCCCC--
Confidence 444555679999986 57 888421 157777643221
Q ss_pred cchhccCCCCCeEEEEEecCCCC----CccccceEEcCCCCeEEEEecCCCCCC--CCcCccccCCCCCeeEEEEecCCC
Q 005550 343 PSLAKRAKPSEVRRIFTMGLSFN----GHHGGQLLFGPTDGYMYFMMGDGGGTA--DPYNFSQNKKSLLGKITRLDVDNI 416 (691)
Q Consensus 343 ~s~~~~~~~~~~~~Il~~~~P~~----~H~GG~L~FGP~DG~LYis~GDgg~~~--DP~~~aQn~~sl~GKILRIdvDg~ 416 (691)
..++ .+.++|++ +++.. .|....|.|+| ||+|||+.|+.+... .|....++.....|+|+|+++|+.
T Consensus 102 ----g~ad-~~~~~l~~-~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~ 174 (367)
T TIGR02604 102 ----DKAD-GEREVLLS-GFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG 174 (367)
T ss_pred ----CCCC-CccEEEEE-ccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence 0111 13344553 56553 24455899999 999999999865421 121123555667899999999982
Q ss_pred CchhhhhhcccCCCcCCCCCCCCCCCCCCCCeEEEecccccceeeecCCCCCeEEEEEccCCCceeEEEeccCCCCCccc
Q 005550 417 PSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRL 496 (691)
Q Consensus 417 p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~afDp~tg~~l~~~DvG~d~~EEIn~I~kG~NYGWP~ 496 (691)
.-|+||.|+||||+++||+. | .||++|++....+||+.+.+|+|||||.
T Consensus 175 -----------------------------~~e~~a~G~rnp~Gl~~d~~-G-~l~~tdn~~~~~~~i~~~~~g~~~g~~~ 223 (367)
T TIGR02604 175 -----------------------------KLRVVAHGFQNPYGHSVDSW-G-DVFFCDNDDPPLCRVTPVAEGGRNGYQS 223 (367)
T ss_pred -----------------------------eEEEEecCcCCCccceECCC-C-CEEEEccCCCceeEEcccccccccCCCC
Confidence 24899999999999999995 6 4999999888889999999999999998
Q ss_pred ccCCCcCCCCCCCCC-CC----CCCCCCCCCceeeccCCccCCCCCCccccceeeecCCCCc-ccCCcEEEEEeccceeE
Q 005550 497 YEGPYLFTPLETPGG-IT----PLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDP-CMFGRYLYADLYATALW 570 (691)
Q Consensus 497 ~eG~~~~~p~~~p~~-~t----~~~~~~~~~Pi~~y~H~~~~~~~Gs~S~tGG~vYrG~~fP-~l~G~y~fgD~~sg~lw 570 (691)
..+.....+...... .. ..+....++|+..+ .++.|++|+.||+|.+|| +|+|.+|++|+.+++||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~ 295 (367)
T TIGR02604 224 FNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVA--------GGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIV 295 (367)
T ss_pred CCCccccccccccccccccccccccccccccccccc--------CCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEE
Confidence 776433222110000 00 00001244556555 234799999999999999 89999999999999999
Q ss_pred EeecCCCCCCCeeEEEeeeecCCCCcccccccCCCCCCCCCccceEEEcCCCcEEEEe-----------C-------CeE
Q 005550 571 AASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPSLGYIYSFGEDNRKDIFILT-----------S-------DGV 632 (691)
Q Consensus 571 ~~~~~p~~~G~~~~~~i~f~c~~~~P~~c~~~~g~~~~~~gri~sf~ed~dGeLYvlt-----------s-------~gI 632 (691)
++++++++.+ ++..... ++.+ ...++|++++.+++||+|||++ + +.|
T Consensus 296 ~~~l~~~g~~-~~~~~~~------------~l~~--~~~~~rp~dv~~~pDG~Lyv~d~~~~~i~~~~~d~~~~~~~GrI 360 (367)
T TIGR02604 296 RYSLEPKGAG-FKGERPE------------FLRS--NDTWFRPVNVTVGPDGALYVSDWYDRGIEHHHDDLNDGRNSGRI 360 (367)
T ss_pred EEEeecCCCc-cEeecCc------------eEec--CCCcccccceeECCCCCEEEEEeccCccccCCcccccCCCCceE
Confidence 9998765432 4322111 1121 1236899999999999999998 3 459
Q ss_pred EEEecC
Q 005550 633 YRVVRP 638 (691)
Q Consensus 633 yRIv~p 638 (691)
|||+++
T Consensus 361 yRi~~~ 366 (367)
T TIGR02604 361 YRITPK 366 (367)
T ss_pred EEEccC
Confidence 999985
No 5
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins. Folate receptors bind to folate and reduced folic acid derivatives and mediate delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. A riboflavin-binding protein required for the transport of riboflavin to the developing oocyte in chicken also belong to this family.; PDB: 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B.
Probab=99.20 E-value=2.4e-12 Score=126.27 Aligned_cols=91 Identities=27% Similarity=0.665 Sum_probs=0.0
Q ss_pred CCCCCCCCcCCC---cccc-ccC-CCCCccCCccCChHHHHHHHHh-h--------cCchhhHHHHHHHHH-h----hhc
Q 005550 26 LCTDSRAPITLN---TTLS-FCP-YNGKTCCNATGDSQLQKQFQAM-N--------ISDSGCSSLLKSILC-A----FAG 86 (691)
Q Consensus 26 ~c~d~~~p~~~~---~~l~-fc~-y~~~~cc~~~~d~~~~~~~~~~-~--------~~~~~c~~~~~~ilc-~----~a~ 86 (691)
+|+|+++|++.+ ..|. ||. |..++||++..|.+|++++..+ . ....+|.+++++|+| + |++
T Consensus 1 ~Cl~~~~~k~~P~pe~~L~~~C~~y~~~sCC~~~~~~~l~~~~~~~~~~~~~~~cg~~s~~C~~~~~~~~Cfy~CsP~~~ 80 (167)
T PF03024_consen 1 QCLDGKPHKRSPGPEPDLASFCSPYKDNSCCTAETDQELARRPSNLVYNFDWDHCGELSPRCERFFKQLECFYECSPNAG 80 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCChhhHhhcCCCCCCCCcCccccHHHHhCcchhcccchhhccccchHHHHHHHHHHhhhccCCcccc
Confidence 699999999944 4487 997 9999999999999999998864 1 247889999999999 5 999
Q ss_pred cccccC---CCCcccccccCCCCCCCCcCcccccccccHHHhhcccCccc
Q 005550 87 ELFTAG---SVVRPVPLLCNSTGSNSSQSSKATITDFCSEVWDTCQNVSV 133 (691)
Q Consensus 87 ~l~~~~---~~~~~~p~lc~~~~~~~~~~~~~~~~~yc~~~~~~c~~~~~ 133 (691)
|+ +++ .+.+.|| ||. +||.++|.+|++.++
T Consensus 81 ~~-~~~~~~~~~~~~P-LC~---------------~~Cd~wf~aCk~d~t 113 (167)
T PF03024_consen 81 HW-QAEDRKTRIRGVP-LCA---------------SFCDDWFEACKDDYT 113 (167)
T ss_dssp --------------------------------------------------
T ss_pred cc-ccCCcCCccCCCC-cCH---------------HHHHHHHHHhhhHHh
Confidence 99 554 4789999 999 999999999999875
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.38 E-value=0.0003 Score=72.02 Aligned_cols=237 Identities=23% Similarity=0.303 Sum_probs=136.8
Q ss_pred eEEEcC-CCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 005550 213 NMVAHP-DGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 290 (691)
Q Consensus 213 ~m~~~p-DGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 290 (691)
+.++.+ +| +||+++. .|+|+.++ ++.+ +. ++. ...+..|++++. .+|++|+...
T Consensus 4 gp~~d~~~g--~l~~~D~~~~~i~~~~-~~~~--~~--------------~~~--~~~~~~G~~~~~---~~g~l~v~~~ 59 (246)
T PF08450_consen 4 GPVWDPRDG--RLYWVDIPGGRIYRVD-PDTG--EV--------------EVI--DLPGPNGMAFDR---PDGRLYVADS 59 (246)
T ss_dssp EEEEETTTT--EEEEEETTTTEEEEEE-TTTT--EE--------------EEE--ESSSEEEEEEEC---TTSEEEEEET
T ss_pred ceEEECCCC--EEEEEEcCCCEEEEEE-CCCC--eE--------------EEE--ecCCCceEEEEc---cCCEEEEEEc
Confidence 456777 55 7999996 78999986 3322 11 111 122389999993 2599999753
Q ss_pred ecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEEecCCC-CCccc
Q 005550 291 CDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSF-NGHHG 369 (691)
Q Consensus 291 ~~~~~~~~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t~~~~~~~~s~~~~~~~~~~~~Il~~~~P~-~~H~G 369 (691)
. .+..+... + .+++.+.+..... ..+.-
T Consensus 60 ~--------------------------------------~~~~~d~~-~------------g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 60 G--------------------------------------GIAVVDPD-T------------GKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp T--------------------------------------CEEEEETT-T------------TEEEEEEEEETTCSCTEEE
T ss_pred C--------------------------------------ceEEEecC-C------------CcEEEEeeccCCCcccCCC
Confidence 1 11222221 1 2445565531111 23344
Q ss_pred cceEEcCCCCeEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCeE
Q 005550 370 GQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEI 449 (691)
Q Consensus 370 G~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI 449 (691)
..+.++| ||.||++.=..... ..... |+|+|++.+++ .++
T Consensus 89 ND~~vd~-~G~ly~t~~~~~~~-----~~~~~----g~v~~~~~~~~------------------------------~~~ 128 (246)
T PF08450_consen 89 NDVAVDP-DGNLYVTDSGGGGA-----SGIDP----GSVYRIDPDGK------------------------------VTV 128 (246)
T ss_dssp EEEEE-T-TS-EEEEEECCBCT-----TCGGS----EEEEEEETTSE------------------------------EEE
T ss_pred ceEEEcC-CCCEEEEecCCCcc-----ccccc----cceEEECCCCe------------------------------EEE
Confidence 5799999 99999986553321 11111 99999999861 256
Q ss_pred EEecccccceeeecCCCCCeEEEEEccCCCceeEEEeccCCCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCceeeccC
Q 005550 450 WALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEGPYLFTPLETPGGITPLNSVSPIFPVLGYNH 529 (691)
Q Consensus 450 ~A~GlRNP~r~afDp~tg~~l~~~DvG~d~~EEIn~I~kG~NYGWP~~eG~~~~~p~~~p~~~t~~~~~~~~~Pi~~y~H 529 (691)
..-++.-|.+++|++.. +.||++|-.....-.+++-..+.-.+ ....++....
T Consensus 129 ~~~~~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~--------------------------~~~~~~~~~~ 181 (246)
T PF08450_consen 129 VADGLGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELS--------------------------NRRVFIDFPG 181 (246)
T ss_dssp EEEEESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEE--------------------------EEEEEEE-SS
T ss_pred EecCcccccceEECCcc-hheeecccccceeEEEecccccccee--------------------------eeeeEEEcCC
Confidence 77899999999999985 47999999887644444322222111 0112222221
Q ss_pred CccCCCCCCccccceeeecCCCCcccCCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCCCCCC
Q 005550 530 SEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPS 609 (691)
Q Consensus 530 ~~~~~~~Gs~S~tGG~vYrG~~fP~l~G~y~fgD~~sg~lw~~~~~p~~~G~~~~~~i~f~c~~~~P~~c~~~~g~~~~~ 609 (691)
+...|-|+.+- -.|+++++++..++|+.+.. .|+.. ..|.+ +
T Consensus 182 -------~~g~pDG~~vD-------~~G~l~va~~~~~~I~~~~p----~G~~~-~~i~~-------------p------ 223 (246)
T PF08450_consen 182 -------GPGYPDGLAVD-------SDGNLWVADWGGGRIVVFDP----DGKLL-REIEL-------------P------ 223 (246)
T ss_dssp -------SSCEEEEEEEB-------TTS-EEEEEETTTEEEEEET----TSCEE-EEEE--------------S------
T ss_pred -------CCcCCCcceEc-------CCCCEEEEEcCCCEEEEECC----CccEE-EEEcC-------------C------
Confidence 11235555552 25889999999999988863 36533 33432 1
Q ss_pred CCccceEEEc-CC-CcEEEEeC
Q 005550 610 LGYIYSFGED-NR-KDIFILTS 629 (691)
Q Consensus 610 ~gri~sf~ed-~d-GeLYvlts 629 (691)
..++.+++.+ +| +.|||++.
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCEEEEEEECCCCCEEEEEeC
Confidence 1256777773 44 77998863
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.93 E-value=0.0075 Score=75.05 Aligned_cols=71 Identities=11% Similarity=0.167 Sum_probs=40.7
Q ss_pred CcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCCC-CCCCCccceEEEcCCCcEEEEeCC-eEEE
Q 005550 557 GRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGND-LPSLGYIYSFGEDNRKDIFILTSD-GVYR 634 (691)
Q Consensus 557 G~y~fgD~~sg~lw~~~~~p~~~G~~~~~~i~f~c~~~~P~~c~~~~g~~-~~~~gri~sf~ed~dGeLYvlts~-gIyR 634 (691)
|..+++|..+++|..+..+ .+ .. ..+. -.+ .+ .+..|.. ...+.++.+++.++||.|||++++ ...|
T Consensus 815 G~LYVADs~N~rIrviD~~---tg-~v-~tia--G~G-~~---G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPA---TK-RV-TTLA--GTG-KA---GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CcEEEEECCCCEEEEEECC---CC-eE-EEEe--ccC-Cc---CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 6789999999988776532 23 21 1111 001 10 0111111 123468999999999999999863 4444
Q ss_pred EecC
Q 005550 635 VVRP 638 (691)
Q Consensus 635 Iv~p 638 (691)
+.+.
T Consensus 884 vid~ 887 (1057)
T PLN02919 884 YLDL 887 (1057)
T ss_pred EEEC
Confidence 5443
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.63 E-value=0.0021 Score=65.80 Aligned_cols=147 Identities=17% Similarity=0.275 Sum_probs=90.6
Q ss_pred eeEEEcCCCCceEEEEecC---------ceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCC
Q 005550 212 LNMVAHPDGSNRAFFSNQE---------GKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKN 282 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~---------G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~N 282 (691)
=.+++.||| ++|+++.. |.||.++ ++ +. + .+...+....-||+|+|+ .
T Consensus 89 ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~-~~-~~---~-------------~~~~~~~~~pNGi~~s~d---g 145 (246)
T PF08450_consen 89 NDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRID-PD-GK---V-------------TVVADGLGFPNGIAFSPD---G 145 (246)
T ss_dssp EEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEE-TT-SE---E-------------EEEEEEESSEEEEEEETT---S
T ss_pred ceEEEcCCC--CEEEEecCCCccccccccceEEEC-CC-Ce---E-------------EEEecCcccccceEECCc---c
Confidence 468899999 69999852 7788876 32 22 1 112233455679999985 4
Q ss_pred CEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEEecC
Q 005550 283 GRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGL 362 (691)
Q Consensus 283 G~~YvsYs~~~~~~~~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t~~~~~~~~s~~~~~~~~~~~~Il~~~~ 362 (691)
..+|+..+.. .+|.+|..+.... ...+.+++.+ .
T Consensus 146 ~~lyv~ds~~------------------------------------~~i~~~~~~~~~~--------~~~~~~~~~~--~ 179 (246)
T PF08450_consen 146 KTLYVADSFN------------------------------------GRIWRFDLDADGG--------ELSNRRVFID--F 179 (246)
T ss_dssp SEEEEEETTT------------------------------------TEEEEEEEETTTC--------CEEEEEEEEE---
T ss_pred hheeeccccc------------------------------------ceeEEEecccccc--------ceeeeeeEEE--c
Confidence 4688865421 2789998864321 1223333433 3
Q ss_pred CCCCccccceEEcCCCCeEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCC
Q 005550 363 SFNGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSED 442 (691)
Q Consensus 363 P~~~H~GG~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~ 442 (691)
+...-..-.|.++. ||.||++.-. .|+|.|++++|+
T Consensus 180 ~~~~g~pDG~~vD~-~G~l~va~~~-----------------~~~I~~~~p~G~-------------------------- 215 (246)
T PF08450_consen 180 PGGPGYPDGLAVDS-DGNLWVADWG-----------------GGRIVVFDPDGK-------------------------- 215 (246)
T ss_dssp SSSSCEEEEEEEBT-TS-EEEEEET-----------------TTEEEEEETTSC--------------------------
T ss_pred CCCCcCCCcceEcC-CCCEEEEEcC-----------------CCEEEEECCCcc--------------------------
Confidence 32221123699999 9999998653 467999999983
Q ss_pred CCCCCeEEEecccccceeeecCCCCCeEEEEE
Q 005550 443 SGLQPEIWALGLRNPWRCSFDSDRPSYFMCAD 474 (691)
Q Consensus 443 ~~~~pEI~A~GlRNP~r~afDp~tg~~l~~~D 474 (691)
.-+++..+..+|-.|+|--.+..+||++-
T Consensus 216 ---~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 ---LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 23567788888999999422333799874
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.08 E-value=0.028 Score=61.11 Aligned_cols=166 Identities=18% Similarity=0.346 Sum_probs=94.0
Q ss_pred eeEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 005550 212 LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 290 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 290 (691)
-.+++.|||. ++||++. ..+|+++.+.. ..++ |. ....+......|.-.|+|||+ ..++||...
T Consensus 147 H~v~~~pdg~-~v~v~dlG~D~v~~~~~~~-~~~~-l~---------~~~~~~~~~G~GPRh~~f~pd---g~~~Yv~~e 211 (345)
T PF10282_consen 147 HQVVFSPDGR-FVYVPDLGADRVYVYDIDD-DTGK-LT---------PVDSIKVPPGSGPRHLAFSPD---GKYAYVVNE 211 (345)
T ss_dssp EEEEE-TTSS-EEEEEETTTTEEEEEEE-T-TS-T-EE---------EEEEEECSTTSSEEEEEE-TT---SSEEEEEET
T ss_pred eeEEECCCCC-EEEEEecCCCEEEEEEEeC-CCce-EE---------EeeccccccCCCCcEEEEcCC---cCEEEEecC
Confidence 4688999996 7999997 47899887632 2221 21 112334456789999999994 567888653
Q ss_pred ecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEEecCCCC--C-c
Q 005550 291 CDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSFN--G-H 367 (691)
Q Consensus 291 ~~~~~~~~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t~~~~~~~~s~~~~~~~~~~~~Il~~~~P~~--~-H 367 (691)
.. ..|..|+++... ..+...+++-. +|.. . -
T Consensus 212 ~s------------------------------------~~v~v~~~~~~~--------g~~~~~~~~~~--~~~~~~~~~ 245 (345)
T PF10282_consen 212 LS------------------------------------NTVSVFDYDPSD--------GSLTEIQTIST--LPEGFTGEN 245 (345)
T ss_dssp TT------------------------------------TEEEEEEEETTT--------TEEEEEEEEES--CETTSCSSS
T ss_pred CC------------------------------------CcEEEEeecccC--------CceeEEEEeee--ccccccccC
Confidence 21 256666664221 11222233322 3321 1 2
Q ss_pred cccceEEcCCCC-eEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCC
Q 005550 368 HGGQLLFGPTDG-YMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQ 446 (691)
Q Consensus 368 ~GG~L~FGP~DG-~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~ 446 (691)
....|.+.| || +||++..... ++ .|++||.++. .+ ..
T Consensus 246 ~~~~i~isp-dg~~lyvsnr~~~-------------sI--~vf~~d~~~g---------------~l-----------~~ 283 (345)
T PF10282_consen 246 APAEIAISP-DGRFLYVSNRGSN-------------SI--SVFDLDPATG---------------TL-----------TL 283 (345)
T ss_dssp SEEEEEE-T-TSSEEEEEECTTT-------------EE--EEEEECTTTT---------------TE-----------EE
T ss_pred CceeEEEec-CCCEEEEEeccCC-------------EE--EEEEEecCCC---------------ce-----------EE
Confidence 566899999 88 6999875511 11 2455543320 00 01
Q ss_pred CeEEEecccccceeeecCCCCCeEEEEEccCCCce
Q 005550 447 PEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYE 481 (691)
Q Consensus 447 pEI~A~GlRNP~r~afDp~tg~~l~~~DvG~d~~E 481 (691)
-+.+..|-+.|..|++||. |++||++..+.+...
T Consensus 284 ~~~~~~~G~~Pr~~~~s~~-g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 284 VQTVPTGGKFPRHFAFSPD-GRYLYVANQDSNTVS 317 (345)
T ss_dssp EEEEEESSSSEEEEEE-TT-SSEEEEEETTTTEEE
T ss_pred EEEEeCCCCCccEEEEeCC-CCEEEEEecCCCeEE
Confidence 2345556678999999997 458999888876543
No 10
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.18 E-value=0.97 Score=56.76 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=23.5
Q ss_pred EecccccceeeecCCCCCeEEEEEccCCCceeEE
Q 005550 451 ALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVD 484 (691)
Q Consensus 451 A~GlRNP~r~afDp~tg~~l~~~DvG~d~~EEIn 484 (691)
.-.+..|.++++|++ | ++|++|.+.+..--++
T Consensus 855 ~a~l~~P~GIavd~d-G-~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 855 KAQLSEPAGLALGEN-G-RLFVADTNNSLIRYLD 886 (1057)
T ss_pred ccccCCceEEEEeCC-C-CEEEEECCCCEEEEEE
Confidence 334578999999996 4 5999998877544333
No 11
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=93.56 E-value=1.7 Score=54.27 Aligned_cols=161 Identities=18% Similarity=0.178 Sum_probs=81.6
Q ss_pred eEEEeccccc---ceeeecCCCCCeEEEEEccCCCceeEEEecc---CCCCCcccccCCCcCCCCCCCCCCCCCCCCCCC
Q 005550 448 EIWALGLRNP---WRCSFDSDRPSYFMCADVGQDVYEEVDIITR---GGNYGWRLYEGPYLFTPLETPGGITPLNSVSPI 521 (691)
Q Consensus 448 EI~A~GlRNP---~r~afDp~tg~~l~~~DvG~d~~EEIn~I~k---G~NYGWP~~eG~~~~~p~~~p~~~t~~~~~~~~ 521 (691)
-|-.+|+-+| +-+|+||.+| .||++|--..+.=.|.-.++ -+||-==.-.|..|.....+ ||....+ .
T Consensus 397 tIl~L~~t~~sh~Yy~AvsPvdg-tlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~des-CGDGalA----~ 470 (1899)
T KOG4659|consen 397 TILTLGLTDTSHSYYIAVSPVDG-TLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADES-CGDGALA----Q 470 (1899)
T ss_pred EEEEecCCCccceeEEEecCcCc-eEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccc-cCcchhc----c
Confidence 4566665444 4689999999 59999876654322222111 23432222234444322222 3322211 1
Q ss_pred CceeeccCCccCCCCCCccccceeeecCCCCcccCCcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccc
Q 005550 522 FPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKV 601 (691)
Q Consensus 522 ~Pi~~y~H~~~~~~~Gs~S~tGG~vYrG~~fP~l~G~y~fgD~~sg~lw~~~~~p~~~G~~~~~~i~f~c~~~~P~~c~~ 601 (691)
.--+ .+|-|..|- -.|..+|+|=. +|..+.+ .|... ..+--.-..-.|++|+.
T Consensus 471 dA~L-------------~~PkGIa~d-------k~g~lYfaD~t--~IR~iD~----~giIs-tlig~~~~~~~p~~C~~ 523 (1899)
T KOG4659|consen 471 DAQL-------------IFPKGIAFD-------KMGNLYFADGT--RIRVIDT----TGIIS-TLIGTTPDQHPPRTCAQ 523 (1899)
T ss_pred ccee-------------ccCCceeEc-------cCCcEEEeccc--EEEEecc----CceEE-EeccCCCCccCcccccc
Confidence 1111 233344442 24667777642 2222222 34221 11100001124677864
Q ss_pred cCCCCCCCCCccceEEEcC-CCcEEEEeCCeEEEEecCCCC
Q 005550 602 LPGNDLPSLGYIYSFGEDN-RKDIFILTSDGVYRVVRPSRC 641 (691)
Q Consensus 602 ~~g~~~~~~gri~sf~ed~-dGeLYvlts~gIyRIv~ps~~ 641 (691)
......-.+--+++++++| |+.|||++++-|+||..--|.
T Consensus 524 ~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV 564 (1899)
T KOG4659|consen 524 ITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRV 564 (1899)
T ss_pred ccchhheeeecccceeecCCCCeEEEeecceEEEEccCccE
Confidence 3322112245789999998 899999999999999876653
No 12
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.50 E-value=2.7 Score=45.67 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=51.9
Q ss_pred cceEEcCCCCeEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCeE
Q 005550 370 GQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEI 449 (691)
Q Consensus 370 G~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI 449 (691)
..+...| ||.+|+++-.. .+ ..-......|+|+|+++++. .-++
T Consensus 114 ND~~v~p-dG~~wfgt~~~---~~---~~~~~~~~~G~lyr~~p~g~-----------------------------~~~l 157 (307)
T COG3386 114 NDGVVDP-DGRIWFGDMGY---FD---LGKSEERPTGSLYRVDPDGG-----------------------------VVRL 157 (307)
T ss_pred CceeEcC-CCCEEEeCCCc---cc---cCccccCCcceEEEEcCCCC-----------------------------EEEe
Confidence 3467788 99999987663 00 11222357889999998762 1133
Q ss_pred EEecccccceeeecCCCCCeEEEEEccCCCceeE
Q 005550 450 WALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEV 483 (691)
Q Consensus 450 ~A~GlRNP~r~afDp~tg~~l~~~DvG~d~~EEI 483 (691)
+.=.+.-|-+++|+|+. +.||.+|-..+..-.+
T Consensus 158 ~~~~~~~~NGla~SpDg-~tly~aDT~~~~i~r~ 190 (307)
T COG3386 158 LDDDLTIPNGLAFSPDG-KTLYVADTPANRIHRY 190 (307)
T ss_pred ecCcEEecCceEECCCC-CEEEEEeCCCCeEEEE
Confidence 44347778899999985 4799999987654333
No 13
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.00 E-value=1.1 Score=49.43 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=45.4
Q ss_pred EEEEEecCce--eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeec-CCCCCcCCccceeeCCCCceeeeeeCCC
Q 005550 202 CLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELD-ASSPFADLTDEVHFDTEFGLMGMAFHPN 278 (691)
Q Consensus 202 ~le~va~Gl~--~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d-~~~pflDi~~~V~~~~e~GLLGiAfhPd 278 (691)
..+++++++. .+|++.+|| |||+++. +|+.+.. .++.++ .| +.+.+++--..-....+.++-++++.|
T Consensus 63 ~~~vfa~~l~~p~Gi~~~~~G---lyV~~~~-~i~~~~d-~~gdg~---ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp- 133 (367)
T TIGR02604 63 KSNVFAEELSMVTGLAVAVGG---VYVATPP-DILFLRD-KDGDDK---ADGEREVLLSGFGGQINNHHHSLNSLAWGP- 133 (367)
T ss_pred eeEEeecCCCCccceeEecCC---EEEeCCC-eEEEEeC-CCCCCC---CCCccEEEEEccCCCCCcccccccCceECC-
Confidence 5678888887 899999988 9999855 5665532 223321 11 111121100000001245677888887
Q ss_pred CCCCCEEEEEEee
Q 005550 279 FAKNGRFFASFNC 291 (691)
Q Consensus 279 F~~NG~~YvsYs~ 291 (691)
+|+||++...
T Consensus 134 ---DG~LYv~~G~ 143 (367)
T TIGR02604 134 ---DGWLYFNHGN 143 (367)
T ss_pred ---CCCEEEeccc
Confidence 7999997653
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.79 E-value=15 Score=39.03 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=38.0
Q ss_pred eeEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEE
Q 005550 212 LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASF 289 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsY 289 (691)
..+++.|||. ++||+.. .+.|+++++...+ .+. +... ..+......|.-+++|||+ ..++||.-
T Consensus 129 ~~~~~~p~g~-~l~v~~~~~~~v~v~d~~~~g---~l~-----~~~~--~~~~~~~g~~p~~~~~~pd---g~~lyv~~ 193 (330)
T PRK11028 129 HSANIDPDNR-TLWVPCLKEDRIRLFTLSDDG---HLV-----AQEP--AEVTTVEGAGPRHMVFHPN---QQYAYCVN 193 (330)
T ss_pred cEeEeCCCCC-EEEEeeCCCCEEEEEEECCCC---ccc-----ccCC--CceecCCCCCCceEEECCC---CCEEEEEe
Confidence 5677899995 7888886 5999998763222 111 0000 0111112356778999985 45688853
No 15
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.40 E-value=11 Score=40.09 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=22.5
Q ss_pred cccccceeeecCCCCCeEEEEEccCCCceeEE
Q 005550 453 GLRNPWRCSFDSDRPSYFMCADVGQDVYEEVD 484 (691)
Q Consensus 453 GlRNP~r~afDp~tg~~l~~~DvG~d~~EEIn 484 (691)
|...|..++++|.. .++|+++.+.+...-++
T Consensus 124 ~~~~~~~~~~~p~g-~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 124 GLEGCHSANIDPDN-RTLWVPCLKEDRIRLFT 154 (330)
T ss_pred CCCcccEeEeCCCC-CEEEEeeCCCCEEEEEE
Confidence 45678999999975 47999998876533333
No 16
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=92.26 E-value=4.8 Score=44.25 Aligned_cols=160 Identities=19% Similarity=0.294 Sum_probs=93.6
Q ss_pred eEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCE-EEEEEe
Q 005550 213 NMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGR-FFASFN 290 (691)
Q Consensus 213 ~m~~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~-~YvsYs 290 (691)
...+.|||. .+++.+. .-+|.++++. +|. |. -..+.....-.|.-=|+||| ||+ .|+.-.
T Consensus 149 ~a~~tP~~~-~l~v~DLG~Dri~~y~~~-dg~---L~---------~~~~~~v~~G~GPRHi~FHp----n~k~aY~v~E 210 (346)
T COG2706 149 SANFTPDGR-YLVVPDLGTDRIFLYDLD-DGK---LT---------PADPAEVKPGAGPRHIVFHP----NGKYAYLVNE 210 (346)
T ss_pred eeeeCCCCC-EEEEeecCCceEEEEEcc-cCc---cc---------cccccccCCCCCcceEEEcC----CCcEEEEEec
Confidence 345678883 5677775 5788888864 332 11 11122234567889999999 565 455321
Q ss_pred ecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEEecCCCC-Cccc
Q 005550 291 CDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSFN-GHHG 369 (691)
Q Consensus 291 ~~~~~~~~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t~~~~~~~~s~~~~~~~~~~~~Il~~~~P~~-~H~G 369 (691)
- ...|.-|..+.. .++..++++|..+..-+. .-.+
T Consensus 211 L------------------------------------~stV~v~~y~~~--------~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 211 L------------------------------------NSTVDVLEYNPA--------VGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred c------------------------------------CCEEEEEEEcCC--------CceEEEeeeeccCccccCCCCce
Confidence 1 124444554432 234456666765322233 3445
Q ss_pred cceEEcCCCC-eEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCe
Q 005550 370 GQLLFGPTDG-YMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPE 448 (691)
Q Consensus 370 G~L~FGP~DG-~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pE 448 (691)
..|...+ || +||++- +..| ++ .+.+||+++.. . ..-+
T Consensus 247 aaIhis~-dGrFLYasN-----------Rg~d--sI--~~f~V~~~~g~-------L-------------------~~~~ 284 (346)
T COG2706 247 AAIHISP-DGRFLYASN-----------RGHD--SI--AVFSVDPDGGK-------L-------------------ELVG 284 (346)
T ss_pred eEEEECC-CCCEEEEec-----------CCCC--eE--EEEEEcCCCCE-------E-------------------EEEE
Confidence 6899999 88 688862 2333 23 37888888620 0 0136
Q ss_pred EEEecccccceeeecCCCCCeEEEEEccC
Q 005550 449 IWALGLRNPWRCSFDSDRPSYFMCADVGQ 477 (691)
Q Consensus 449 I~A~GlRNP~r~afDp~tg~~l~~~DvG~ 477 (691)
+|..+-+-|-.+.+++.. +.|+++..-.
T Consensus 285 ~~~teg~~PR~F~i~~~g-~~Liaa~q~s 312 (346)
T COG2706 285 ITPTEGQFPRDFNINPSG-RFLIAANQKS 312 (346)
T ss_pred EeccCCcCCccceeCCCC-CEEEEEccCC
Confidence 778888889999999974 4566654333
No 17
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.16 E-value=12 Score=37.81 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=19.9
Q ss_pred eeEEEcCCCCceEEEEe-cCceEEEEEc
Q 005550 212 LNMVAHPDGSNRAFFSN-QEGKIWLATI 238 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~e-q~G~V~~~~~ 238 (691)
..+++.|||. +++++. .+|.|+++++
T Consensus 160 ~~~~~s~dg~-~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 160 RFAEFTADGK-ELWVSSEIGGTVSVIDV 186 (300)
T ss_pred cEEEECCCCC-EEEEEcCCCCEEEEEEc
Confidence 5688999985 566664 5899999875
No 18
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=90.20 E-value=5.9 Score=41.81 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=37.7
Q ss_pred CcEEEEEe-cCce--eeEEEcCCCCceEEEEe-cCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeee
Q 005550 200 GLCLEKIG-NGSY--LNMVAHPDGSNRAFFSN-QEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAF 275 (691)
Q Consensus 200 G~~le~va-~Gl~--~~m~~~pDGs~RlfV~e-q~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAf 275 (691)
|=.++++. .|.. =+++...+| ++.|++ +.+.|++++++.++. .+.... ...+++ .+...+..|+=|+|+
T Consensus 53 G~vlr~i~l~g~~D~EgI~y~g~~--~~vl~~Er~~~L~~~~~~~~~~--~~~~~~-~~~~~l--~~~~~~N~G~EGla~ 125 (248)
T PF06977_consen 53 GKVLRRIPLDGFGDYEGITYLGNG--RYVLSEERDQRLYIFTIDDDTT--SLDRAD-VQKISL--GFPNKGNKGFEGLAY 125 (248)
T ss_dssp --EEEEEE-SS-SSEEEEEE-STT--EEEEEETTTTEEEEEEE----T--T--EEE-EEEEE-----S---SS--EEEEE
T ss_pred CCEEEEEeCCCCCCceeEEEECCC--EEEEEEcCCCcEEEEEEecccc--ccchhh-ceEEec--ccccCCCcceEEEEE
Confidence 33355554 3433 467778777 555544 789999888754321 111100 001111 111246789999999
Q ss_pred CCCCCCCCEEEEE
Q 005550 276 HPNFAKNGRFFAS 288 (691)
Q Consensus 276 hPdF~~NG~~Yvs 288 (691)
+| .+++||+.
T Consensus 126 D~---~~~~L~v~ 135 (248)
T PF06977_consen 126 DP---KTNRLFVA 135 (248)
T ss_dssp ET---TTTEEEEE
T ss_pred cC---CCCEEEEE
Confidence 97 57889886
No 19
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.08 E-value=7.1 Score=42.49 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=39.7
Q ss_pred cCce-eeEEEcCCCCceEEEEec-CceEEEEEcc-CCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCE
Q 005550 208 NGSY-LNMVAHPDGSNRAFFSNQ-EGKIWLATIP-EQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGR 284 (691)
Q Consensus 208 ~Gl~-~~m~~~pDGs~RlfV~eq-~G~V~~~~~p-~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~ 284 (691)
.|.. +.|+++|||. ++||+.. .+.|.++++. ++|. ++.-...+- + +. ...++...-+|+++|| ..+
T Consensus 190 ~G~GPRh~~f~pdg~-~~Yv~~e~s~~v~v~~~~~~~g~---~~~~~~~~~--~-~~-~~~~~~~~~~i~ispd---g~~ 258 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGK-YAYVVNELSNTVSVFDYDPSDGS---LTEIQTIST--L-PE-GFTGENAPAEIAISPD---GRF 258 (345)
T ss_dssp TTSSEEEEEE-TTSS-EEEEEETTTTEEEEEEEETTTTE---EEEEEEEES--C-ET-TSCSSSSEEEEEE-TT---SSE
T ss_pred cCCCCcEEEEcCCcC-EEEEecCCCCcEEEEeecccCCc---eeEEEEeee--c-cc-cccccCCceeEEEecC---CCE
Confidence 3444 8999999997 7888865 7889888765 2222 211001010 1 01 1223346789999995 346
Q ss_pred EEEEE
Q 005550 285 FFASF 289 (691)
Q Consensus 285 ~YvsY 289 (691)
+||+-
T Consensus 259 lyvsn 263 (345)
T PF10282_consen 259 LYVSN 263 (345)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77754
No 20
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.07 E-value=8.2 Score=44.29 Aligned_cols=40 Identities=13% Similarity=0.344 Sum_probs=30.3
Q ss_pred CCCCeEEEecccccceeeecCCCCCeEEEEEccCCCceeEEEecc
Q 005550 444 GLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITR 488 (691)
Q Consensus 444 ~~~pEI~A~GlRNP~r~afDp~tg~~l~~~DvG~d~~EEIn~I~k 488 (691)
+...|++|-||.+||.++|.|. | +||+++-+. -+|-+|..
T Consensus 19 ~f~~~~va~GL~~Pw~maflPD-G-~llVtER~~---G~I~~v~~ 58 (454)
T TIGR03606 19 NFDKKVLLSGLNKPWALLWGPD-N-QLWVTERAT---GKILRVNP 58 (454)
T ss_pred CcEEEEEECCCCCceEEEEcCC-C-eEEEEEecC---CEEEEEeC
Confidence 3456899999999999999996 4 699999743 23555543
No 21
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.51 E-value=25 Score=38.16 Aligned_cols=72 Identities=15% Similarity=0.250 Sum_probs=52.3
Q ss_pred cCCCCCccccc-eEEcCCCCeEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCC
Q 005550 361 GLSFNGHHGGQ-LLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPF 439 (691)
Q Consensus 361 ~~P~~~H~GG~-L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF 439 (691)
.+|...|+|.+ |--+| -|.+++++= -.|.++|+|+..+ .|-.|..|..||-
T Consensus 226 p~P~~~~~gsRriwsdp-ig~~wittw-----------------g~g~l~rfdPs~~----------sW~eypLPgs~ar 277 (353)
T COG4257 226 PQPNALKAGSRRIWSDP-IGRAWITTW-----------------GTGSLHRFDPSVT----------SWIEYPLPGSKAR 277 (353)
T ss_pred cCCCcccccccccccCc-cCcEEEecc-----------------CCceeeEeCcccc----------cceeeeCCCCCCC
Confidence 35666788875 66677 899999832 2567899998762 4899999988872
Q ss_pred CCCCCCCCeEEEecccccceeeecCCCCCeEEEEEccCCC
Q 005550 440 SEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDV 479 (691)
Q Consensus 440 ~~~~~~~pEI~A~GlRNP~r~afDp~tg~~l~~~DvG~d~ 479 (691)
|.-+-+|..+ ++|.+|-+-+.
T Consensus 278 -----------------pys~rVD~~g--rVW~sea~aga 298 (353)
T COG4257 278 -----------------PYSMRVDRHG--RVWLSEADAGA 298 (353)
T ss_pred -----------------cceeeeccCC--cEEeeccccCc
Confidence 2356778764 68988877654
No 22
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=86.66 E-value=19 Score=39.20 Aligned_cols=145 Identities=20% Similarity=0.350 Sum_probs=82.7
Q ss_pred CCCcEEEEEecCce--eeEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCce-eee
Q 005550 198 PQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGL-MGM 273 (691)
Q Consensus 198 p~G~~le~va~Gl~--~~m~~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GL-LGi 273 (691)
|.|-.++.+.+.+. =+|+++|||. .||++|- .++|+.+.++. ..+ .++.... .|....+.|+ =|+
T Consensus 150 p~g~~~~l~~~~~~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~-~~g---~~~~~~~------~~~~~~~~G~PDG~ 218 (307)
T COG3386 150 PDGGVVRLLDDDLTIPNGLAFSPDGK-TLYVADTPANRIHRYDLDP-ATG---PIGGRRG------FVDFDEEPGLPDGM 218 (307)
T ss_pred CCCCEEEeecCcEEecCceEECCCCC-EEEEEeCCCCeEEEEecCc-ccC---ccCCcce------EEEccCCCCCCCce
Confidence 33433333333366 4799999997 8999997 58999987642 111 1112221 2333344554 578
Q ss_pred eeCCCCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCC
Q 005550 274 AFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSE 353 (691)
Q Consensus 274 AfhPdF~~NG~~YvsYs~~~~~~~~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t~~~~~~~~s~~~~~~~~~ 353 (691)
+.| .+|.+|+...-. | .+|.+|..++
T Consensus 219 ~vD----adG~lw~~a~~~----------------------------g-------~~v~~~~pdG--------------- 244 (307)
T COG3386 219 AVD----ADGNLWVAAVWG----------------------------G-------GRVVRFNPDG--------------- 244 (307)
T ss_pred EEe----CCCCEEEecccC----------------------------C-------ceEEEECCCC---------------
Confidence 988 689998733211 1 2677886532
Q ss_pred eEEEEEecCCCCCccccceEEcCCC-CeEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCC
Q 005550 354 VRRIFTMGLSFNGHHGGQLLFGPTD-GYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDN 415 (691)
Q Consensus 354 ~~~Il~~~~P~~~H~GG~L~FGP~D-G~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg 415 (691)
+.|-++.+|. -.-..+.||-.| ..|||++-..+.. . ... ...+.|+++++....
T Consensus 245 -~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~~~~~~-~--~~~--~~~~~G~lf~~~~~~ 299 (307)
T COG3386 245 -KLLGEIKLPV--KRPTNPAFGGPDLNTLYITSARSGMS-R--MLT--ADPLGGGLFSLRLEV 299 (307)
T ss_pred -cEEEEEECCC--CCCccceEeCCCcCEEEEEecCCCCC-c--ccc--ccccCceEEEEeccc
Confidence 1122234553 111236664313 5799998876543 1 122 346899999998765
No 23
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=84.25 E-value=55 Score=36.46 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=44.7
Q ss_pred CCcccc--ceEEcCCCCeEEEEe-cCCCCCCCCcCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCC
Q 005550 365 NGHHGG--QLLFGPTDGYMYFMM-GDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSE 441 (691)
Q Consensus 365 ~~H~GG--~L~FGP~DG~LYis~-GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~ 441 (691)
+++-|| .+.+.|..++|||.+ |.+ .+ . .+.....|..||....
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~--~~---t----hk~~~~~V~ViD~~t~------------------------- 289 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRA--KW---T----HKTASRFLFVVDAKTG------------------------- 289 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCc--cc---c----ccCCCCEEEEEECCCC-------------------------
Confidence 456666 499998336899944 321 00 0 0123457888887552
Q ss_pred CCCCCCeEEEecccccceeeecCCCCC-eEEEEEccCC
Q 005550 442 DSGLQPEIWALGLRNPWRCSFDSDRPS-YFMCADVGQD 478 (691)
Q Consensus 442 ~~~~~pEI~A~GlRNP~r~afDp~tg~-~l~~~DvG~d 478 (691)
..-..+..| +.||++++.++ +. +||+++-+.+
T Consensus 290 ---kvi~~i~vG-~~~~~iavS~D-gkp~lyvtn~~s~ 322 (352)
T TIGR02658 290 ---KRLRKIELG-HEIDSINVSQD-AKPLLYALSTGDK 322 (352)
T ss_pred ---eEEEEEeCC-CceeeEEECCC-CCeEEEEeCCCCC
Confidence 011234456 47899999997 44 6887765544
No 24
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.02 E-value=38 Score=36.77 Aligned_cols=40 Identities=30% Similarity=0.500 Sum_probs=26.0
Q ss_pred CcEEEEEecCce-eeEEEcCCCCceEEEEecC-ceEEEEEccCCC
Q 005550 200 GLCLEKIGNGSY-LNMVAHPDGSNRAFFSNQE-GKIWLATIPEQG 242 (691)
Q Consensus 200 G~~le~va~Gl~-~~m~~~pDGs~RlfV~eq~-G~V~~~~~p~~g 242 (691)
++..=.+-+|.. ..++++|||+ +|.+.|. |.|=.++ |..|
T Consensus 52 s~~~fpvp~G~ap~dvapapdG~--VWft~qg~gaiGhLd-P~tG 93 (353)
T COG4257 52 SSAEFPVPNGSAPFDVAPAPDGA--VWFTAQGTGAIGHLD-PATG 93 (353)
T ss_pred ccceeccCCCCCccccccCCCCc--eEEecCccccceecC-CCCC
Confidence 444444556666 7888999996 8888874 5555554 5433
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=83.81 E-value=8.3 Score=43.97 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=68.3
Q ss_pred hhhhc---cchhhhhhcCCCCCCCCeeecCCcccc-----CCCCCCCC-CCCcEEEEEecCce-eeEEEcCCCCceEEEE
Q 005550 158 TEFWQ---SKADFCNAFGGTSKDGSVCFNGEPVTL-----NNTGTPNP-PQGLCLEKIGNGSY-LNMVAHPDGSNRAFFS 227 (691)
Q Consensus 158 ~~~~~---~~~~fc~~~~~~~~~~~~cf~~~~~~~-----~~~~~~~~-p~G~~le~va~Gl~-~~m~~~pDGs~RlfV~ 227 (691)
..+|. +..---.+.+-...-.+.||.....+| ...--..+ --|-|+..+..|-. .-+-++||+-|-+|+.
T Consensus 239 vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G 318 (503)
T KOG0282|consen 239 VKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG 318 (503)
T ss_pred EEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe
Confidence 35676 233333444443455677777665543 21111111 23889999988876 6788999996656666
Q ss_pred ecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEeec
Q 005550 228 NQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNCD 292 (691)
Q Consensus 228 eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs~~ 292 (691)
-.+|+|+.++. .+++.++ -+-...+..+.|.|-| +|+-||+-+.+
T Consensus 319 ~sd~ki~~wDi---Rs~kvvq-------------eYd~hLg~i~~i~F~~----~g~rFissSDd 363 (503)
T KOG0282|consen 319 GSDKKIRQWDI---RSGKVVQ-------------EYDRHLGAILDITFVD----EGRRFISSSDD 363 (503)
T ss_pred cCCCcEEEEec---cchHHHH-------------HHHhhhhheeeeEEcc----CCceEeeeccC
Confidence 67999999874 3333221 0112346678888875 67777766644
No 26
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=83.23 E-value=21 Score=41.04 Aligned_cols=68 Identities=26% Similarity=0.552 Sum_probs=45.2
Q ss_pred CcEEEEEecCce--eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCce-eeeeeC
Q 005550 200 GLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGL-MGMAFH 276 (691)
Q Consensus 200 G~~le~va~Gl~--~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GL-LGiAfh 276 (691)
|-.++++..+|. -+|...|||- .+.|+.-.++||++++ ++|..+. +| ..|-|| ++++.|
T Consensus 391 ~~e~kr~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vidi-dngnv~~---------id-------kS~~~lItdf~~~ 452 (668)
T COG4946 391 GGEVKRIEKDLGNIEAVKVSPDGK-KVVVANDRFELWVIDI-DNGNVRL---------ID-------KSEYGLITDFDWH 452 (668)
T ss_pred CceEEEeeCCccceEEEEEcCCCc-EEEEEcCceEEEEEEe-cCCCeeE---------ec-------ccccceeEEEEEc
Confidence 344566666665 6788999994 4888888999999987 4443211 11 234454 899999
Q ss_pred CCCCCCCEEEEEEe
Q 005550 277 PNFAKNGRFFASFN 290 (691)
Q Consensus 277 PdF~~NG~~YvsYs 290 (691)
| |+++.. |.
T Consensus 453 ~----nsr~iA-Ya 461 (668)
T COG4946 453 P----NSRWIA-YA 461 (668)
T ss_pred C----CceeEE-Ee
Confidence 8 666644 54
No 27
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=80.03 E-value=2.2 Score=29.71 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.2
Q ss_pred ccccceeeecCCCCCeEEEEEccCC
Q 005550 454 LRNPWRCSFDSDRPSYFMCADVGQD 478 (691)
Q Consensus 454 lRNP~r~afDp~tg~~l~~~DvG~d 478 (691)
|++|+++++|+. | .||++|.+..
T Consensus 1 f~~P~gvav~~~-g-~i~VaD~~n~ 23 (28)
T PF01436_consen 1 FNYPHGVAVDSD-G-NIYVADSGNH 23 (28)
T ss_dssp BSSEEEEEEETT-S-EEEEEECCCT
T ss_pred CcCCcEEEEeCC-C-CEEEEECCCC
Confidence 689999999964 5 6999997764
No 28
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=79.96 E-value=3.6 Score=28.67 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=19.5
Q ss_pred CccceEEEcCCCcEEEEeCC--eEEE
Q 005550 611 GYIYSFGEDNRKDIFILTSD--GVYR 634 (691)
Q Consensus 611 gri~sf~ed~dGeLYvlts~--gIyR 634 (691)
.+|.+++.+++|+|||++.+ .|.+
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEE
Confidence 36789999999999999974 4554
No 29
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.64 E-value=6.6 Score=35.22 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=47.7
Q ss_pred eEEcCCC-CeEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCeEE
Q 005550 372 LLFGPTD-GYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIW 450 (691)
Q Consensus 372 L~FGP~D-G~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI~ 450 (691)
|.+.+ | |.+|++-...-..-.-+...--.....|.+||.|+.++ .-+|-
T Consensus 3 ldv~~-~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~-----------------------------~~~vl 52 (89)
T PF03088_consen 3 LDVDQ-DTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK-----------------------------ETTVL 52 (89)
T ss_dssp EEE-T-TT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT-----------------------------EEEEE
T ss_pred eeEec-CCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC-----------------------------eEEEe
Confidence 56777 6 99999988643211101011111467899999999873 23799
Q ss_pred EecccccceeeecCCCCCeEEEEEccCCC
Q 005550 451 ALGLRNPWRCSFDSDRPSYFMCADVGQDV 479 (691)
Q Consensus 451 A~GlRNP~r~afDp~tg~~l~~~DvG~d~ 479 (691)
+-||+=|-|++..++. +.++++|-+..+
T Consensus 53 ~~~L~fpNGVals~d~-~~vlv~Et~~~R 80 (89)
T PF03088_consen 53 LDGLYFPNGVALSPDE-SFVLVAETGRYR 80 (89)
T ss_dssp EEEESSEEEEEE-TTS-SEEEEEEGGGTE
T ss_pred hhCCCccCeEEEcCCC-CEEEEEeccCce
Confidence 9999999999999974 468899988754
No 30
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=76.91 E-value=1.3e+02 Score=33.50 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=42.5
Q ss_pred EEEEEecCce-eeEEEcCCCCceEEEEec---CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCC
Q 005550 202 CLEKIGNGSY-LNMVAHPDGSNRAFFSNQ---EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHP 277 (691)
Q Consensus 202 ~le~va~Gl~-~~m~~~pDGs~RlfV~eq---~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhP 277 (691)
+++.+.-|.. ..+++.|||. .+||+.- .+.|++++ + .+++.++ .+. .++. ..++|++|
T Consensus 108 ~~~~~~vG~~P~~~~~~~~~~-~vYV~n~~~~~~~vsvid-~--~t~~~~~------------~~~-vG~~-P~~~a~~p 169 (381)
T COG3391 108 VLGSIPVGLGPVGLAVDPDGK-YVYVANAGNGNNTVSVID-A--ATNKVTA------------TIP-VGNT-PTGVAVDP 169 (381)
T ss_pred eeeEeeeccCCceEEECCCCC-EEEEEecccCCceEEEEe-C--CCCeEEE------------EEe-cCCC-cceEEECC
Confidence 4455555655 7899999996 6999997 57888875 2 2222221 111 2222 29999998
Q ss_pred CCCCCCEEEEEE
Q 005550 278 NFAKNGRFFASF 289 (691)
Q Consensus 278 dF~~NG~~YvsY 289 (691)
+ -.++|+..
T Consensus 170 ~---g~~vyv~~ 178 (381)
T COG3391 170 D---GNKVYVTN 178 (381)
T ss_pred C---CCeEEEEe
Confidence 4 44599876
No 31
>PRK04043 tolB translocation protein TolB; Provisional
Probab=76.15 E-value=1.4e+02 Score=33.71 Aligned_cols=43 Identities=5% Similarity=-0.025 Sum_probs=27.3
Q ss_pred CCCCCcEEEEEec-CceeeEEEcCCCCceEEEEec---CceEEEEEc
Q 005550 196 NPPQGLCLEKIGN-GSYLNMVAHPDGSNRAFFSNQ---EGKIWLATI 238 (691)
Q Consensus 196 ~~p~G~~le~va~-Gl~~~m~~~pDGs~RlfV~eq---~G~V~~~~~ 238 (691)
.+..|...+.+.. +......+.|||...+|++.. ...||++++
T Consensus 174 ~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl 220 (419)
T PRK04043 174 ADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNL 220 (419)
T ss_pred ECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEEC
Confidence 3456665565554 333788999999633666443 356998875
No 32
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=74.68 E-value=22 Score=39.58 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=15.6
Q ss_pred CccccceEEcCCCCe--EEEEecC
Q 005550 366 GHHGGQLLFGPTDGY--MYFMMGD 387 (691)
Q Consensus 366 ~H~GG~L~FGP~DG~--LYis~GD 387 (691)
.|...+|.|.| ||. ||++.+.
T Consensus 298 G~~~~~iavS~-Dgkp~lyvtn~~ 320 (352)
T TIGR02658 298 GHEIDSINVSQ-DAKPLLYALSTG 320 (352)
T ss_pred CCceeeEEECC-CCCeEEEEeCCC
Confidence 35666799999 865 7777765
No 33
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=72.93 E-value=20 Score=37.97 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=31.1
Q ss_pred eeEEEcCCCCceEEEEecC--ceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEE
Q 005550 212 LNMVAHPDGSNRAFFSNQE--GKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASF 289 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~--G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsY 289 (691)
=++++.|.+ +|+||+... ..|+.+.... ....+.+.....+.+ .. ..-+-+-++++|| ++|.+||.-
T Consensus 121 EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~--~~~~~~~~~~~~~~~--~~---~~~~d~S~l~~~p---~t~~lliLS 189 (248)
T PF06977_consen 121 EGLAYDPKT-NRLFVAKERKPKRLYEVNGFP--GGFDLFVSDDQDLDD--DK---LFVRDLSGLSYDP---RTGHLLILS 189 (248)
T ss_dssp EEEEEETTT-TEEEEEEESSSEEEEEEESTT---SS--EEEE-HHHH---HT-----SS---EEEEET---TTTEEEEEE
T ss_pred EEEEEcCCC-CEEEEEeCCCChhhEEEcccc--Cccceeecccccccc--cc---ceeccccceEEcC---CCCeEEEEE
Confidence 367777765 489988754 4555543200 111111100001110 00 1123467899998 588999963
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=72.62 E-value=1.3e+02 Score=32.32 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.6
Q ss_pred eEEEcCCCCceEEEEecCceEEEEEccC
Q 005550 213 NMVAHPDGSNRAFFSNQEGKIWLATIPE 240 (691)
Q Consensus 213 ~m~~~pDGs~RlfV~eq~G~V~~~~~p~ 240 (691)
.++.+|.-+ .||+.+|.|.||++++-+
T Consensus 129 ~vvlhpnQt-eLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 129 TVVLHPNQT-ELISGDQSGNIRVWDLGE 155 (311)
T ss_pred eEEecCCcc-eEEeecCCCcEEEEEccC
Confidence 467788877 699999999999998743
No 35
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=72.42 E-value=18 Score=42.36 Aligned_cols=101 Identities=22% Similarity=0.320 Sum_probs=54.4
Q ss_pred ceEEcCCCCeEEEEecCCCCCCCCcCcccc--CCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCe
Q 005550 371 QLLFGPTDGYMYFMMGDGGGTADPYNFSQN--KKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPE 448 (691)
Q Consensus 371 ~L~FGP~DG~LYis~GDgg~~~DP~~~aQn--~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pE 448 (691)
.|.+.|.+|.+|+++=..+........+.| .....|.|+|+++++..... ....|..+-+ ..+|-.........
T Consensus 354 gi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~---~~f~~~~~~~-~g~~~~~~~~~~~~ 429 (524)
T PF05787_consen 354 GITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAA---TTFTWELFLV-GGDPTDASGNGSNK 429 (524)
T ss_pred CeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCcccc---ceeEEEEEEE-ecCcccccccccCc
Confidence 488888889999998665532111012333 36789999999988731111 1111211111 12221111111112
Q ss_pred EEEecccccceeeecCCCCCeEEEEEccC
Q 005550 449 IWALGLRNPWRCSFDSDRPSYFMCADVGQ 477 (691)
Q Consensus 449 I~A~GlRNP~r~afDp~tg~~l~~~DvG~ 477 (691)
.=.-+|.||=.++||+. | +||+.+=+.
T Consensus 430 ~~~~~f~sPDNL~~d~~-G-~LwI~eD~~ 456 (524)
T PF05787_consen 430 CDDNGFASPDNLAFDPD-G-NLWIQEDGG 456 (524)
T ss_pred ccCCCcCCCCceEECCC-C-CEEEEeCCC
Confidence 23456899999999996 5 376654433
No 36
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=72.38 E-value=6.2 Score=28.71 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=27.3
Q ss_pred EEEecccccceeeecCCCCCeEEEEEccCCCceeE
Q 005550 449 IWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEV 483 (691)
Q Consensus 449 I~A~GlRNP~r~afDp~tg~~l~~~DvG~d~~EEI 483 (691)
+..-++..|-+++||+..+ +||.+|......+..
T Consensus 3 ~~~~~~~~~~~la~d~~~~-~lYw~D~~~~~I~~~ 36 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEG-RLYWTDWGLDVIEVA 36 (43)
T ss_pred EEECCCCCcCEEEEeecCC-EEEEEeCCCCEEEEE
Confidence 4566889999999999987 799999999554443
No 37
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=71.36 E-value=1.7e+02 Score=32.50 Aligned_cols=68 Identities=16% Similarity=0.364 Sum_probs=41.2
Q ss_pred EEEEEecCce--eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCC
Q 005550 202 CLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNF 279 (691)
Q Consensus 202 ~le~va~Gl~--~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF 279 (691)
.+.+|..|-. ..+++.|||. .+||+.++|.|.++++. +++.+ .+|..+ .+..|+|+.||
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~---~~~~v------------~~i~~G--~~~~~i~~s~D- 88 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLA---TGKVV------------ATIKVG--GNPRGIAVSPD- 88 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETT---SSSEE------------EEEE-S--SEEEEEEE--T-
T ss_pred EEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECC---cccEE------------EEEecC--CCcceEEEcCC-
Confidence 4667776544 5678899996 69999999999998752 22222 234332 35789999863
Q ss_pred CCCCEEEEEEe
Q 005550 280 AKNGRFFASFN 290 (691)
Q Consensus 280 ~~NG~~YvsYs 290 (691)
..++|+.-.
T Consensus 89 --G~~~~v~n~ 97 (369)
T PF02239_consen 89 --GKYVYVANY 97 (369)
T ss_dssp --TTEEEEEEE
T ss_pred --CCEEEEEec
Confidence 346777543
No 38
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.99 E-value=1.3e+02 Score=32.87 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=39.2
Q ss_pred eEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEE
Q 005550 213 NMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASF 289 (691)
Q Consensus 213 ~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsY 289 (691)
.+.+..+|- =+.+-||...+++.++..++ ..+.++ ..-+-+ ........||=|+|-+| .+++||+.=
T Consensus 133 ~Ieyig~n~-fvi~dER~~~l~~~~vd~~t--~~~~~~--~~~i~L--~~~~k~N~GfEGlA~d~---~~~~l~~aK 199 (316)
T COG3204 133 TIEYIGGNQ-FVIVDERDRALYLFTVDADT--TVISAK--VQKIPL--GTTNKKNKGFEGLAWDP---VDHRLFVAK 199 (316)
T ss_pred HeEEecCCE-EEEEehhcceEEEEEEcCCc--cEEecc--ceEEec--cccCCCCcCceeeecCC---CCceEEEEE
Confidence 456666661 23444578999988774322 222221 111111 12223489999999998 588998854
No 39
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=69.78 E-value=5.7 Score=26.79 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=16.1
Q ss_pred CccceEEEcCCCcEEEEeC
Q 005550 611 GYIYSFGEDNRKDIFILTS 629 (691)
Q Consensus 611 gri~sf~ed~dGeLYvlts 629 (691)
..|.++.+|.+|.|||.|.
T Consensus 5 n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SCEEEEEE-TTSCEEEEET
T ss_pred CeEEEEEEcCCcCEEEEeC
Confidence 4689999999999999885
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=63.38 E-value=1.3e+02 Score=29.01 Aligned_cols=58 Identities=28% Similarity=0.429 Sum_probs=37.6
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 005550 212 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 290 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 290 (691)
..|.+.|+|. +++++..+|.|++++... ++.+. . ....+.....++++|+ +.+++..+
T Consensus 181 ~~~~~~~~~~-~l~~~~~~~~i~i~d~~~---~~~~~-----~--------~~~~~~~i~~~~~~~~----~~~~~~~~ 238 (289)
T cd00200 181 NSVAFSPDGE-KLLSSSSDGTIKLWDLST---GKCLG-----T--------LRGHENGVNSVAFSPD----GYLLASGS 238 (289)
T ss_pred ceEEECCCcC-EEEEecCCCcEEEEECCC---Cceec-----c--------hhhcCCceEEEEEcCC----CcEEEEEc
Confidence 6889999985 688888899999987421 22111 0 1122347788999985 55655543
No 41
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=62.66 E-value=65 Score=41.38 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=41.9
Q ss_pred CCCCcEEEEEecCceeeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeee--cCCCCCcCCccceeeCCCCceeeee
Q 005550 197 PPQGLCLEKIGNGSYLNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMEL--DASSPFADLTDEVHFDTEFGLMGMA 274 (691)
Q Consensus 197 ~p~G~~le~va~Gl~~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~--d~~~pflDi~~~V~~~~e~GLLGiA 274 (691)
-|+|+.+.+.. . ...-||+ |+=+.+++|.|..+- |+. .++. -.-.-.+|+. ++... =..++|
T Consensus 476 ~PkGIa~dk~g-----~-lYfaD~t-~IR~iD~~giIstli----g~~-~~~~~p~~C~~~~kl~-~~~le---WPT~La 539 (1899)
T KOG4659|consen 476 FPKGIAFDKMG-----N-LYFADGT-RIRVIDTTGIISTLI----GTT-PDQHPPRTCAQITKLV-DLQLE---WPTSLA 539 (1899)
T ss_pred cCCceeEccCC-----c-EEEeccc-EEEEeccCceEEEec----cCC-CCccCccccccccchh-heeee---ccccee
Confidence 38898877754 2 3344887 799999999998652 221 1110 0011123331 22222 247889
Q ss_pred eCCCCCCCCEEEEEE
Q 005550 275 FHPNFAKNGRFFASF 289 (691)
Q Consensus 275 fhPdF~~NG~~YvsY 289 (691)
++| -++-+||.-
T Consensus 540 V~P---mdnsl~Vld 551 (1899)
T KOG4659|consen 540 VDP---MDNSLLVLD 551 (1899)
T ss_pred ecC---CCCeEEEee
Confidence 998 367788854
No 42
>PTZ00420 coronin; Provisional
Probab=62.09 E-value=1.7e+02 Score=34.81 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=35.6
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCC
Q 005550 212 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPN 278 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPd 278 (691)
+.++|+|+..+.|..+..+|.|++++++..+. .+. ....+. .+..+.......++|||+
T Consensus 78 ~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~--~~~-~i~~p~-----~~L~gH~~~V~sVaf~P~ 136 (568)
T PTZ00420 78 LDLQFNPCFSEILASGSEDLTIRVWEIPHNDE--SVK-EIKDPQ-----CILKGHKKKISIIDWNPM 136 (568)
T ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc--ccc-ccccce-----EEeecCCCcEEEEEECCC
Confidence 78899998555666777899999998764321 000 000111 112233456789999995
No 43
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=60.23 E-value=36 Score=37.10 Aligned_cols=67 Identities=33% Similarity=0.526 Sum_probs=46.2
Q ss_pred eeEEEcCCCCceEEEEe--------------cCceEEEEEccCCCCCceeeecCCCCCcC---CccceeeCCCCceeeee
Q 005550 212 LNMVAHPDGSNRAFFSN--------------QEGKIWLATIPEQGLGETMELDASSPFAD---LTDEVHFDTEFGLMGMA 274 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~e--------------q~G~V~~~~~p~~gsg~~l~~d~~~pflD---i~~~V~~~~e~GLLGiA 274 (691)
..|++.||| .|||+- ..|+|..++ + +|+ +....||.+ ...+|++.+-|-..+||
T Consensus 117 ~~l~fgpDG--~LYvs~G~~~~~~~~~~~~~~~G~ilri~-~-dG~-----~p~dnP~~~~~~~~~~i~A~GlRN~~~~~ 187 (331)
T PF07995_consen 117 GGLAFGPDG--KLYVSVGDGGNDDNAQDPNSLRGKILRID-P-DGS-----IPADNPFVGDDGADSEIYAYGLRNPFGLA 187 (331)
T ss_dssp EEEEE-TTS--EEEEEEB-TTTGGGGCSTTSSTTEEEEEE-T-TSS-----B-TTSTTTTSTTSTTTEEEE--SEEEEEE
T ss_pred ccccCCCCC--cEEEEeCCCCCcccccccccccceEEEec-c-cCc-----CCCCCccccCCCceEEEEEeCCCccccEE
Confidence 679999999 699974 158887775 2 343 124577763 23478889999999999
Q ss_pred eCCCCCCCCEEEEEEe
Q 005550 275 FHPNFAKNGRFFASFN 290 (691)
Q Consensus 275 fhPdF~~NG~~YvsYs 290 (691)
|||. +|.+|+.-.
T Consensus 188 ~d~~---tg~l~~~d~ 200 (331)
T PF07995_consen 188 FDPN---TGRLWAADN 200 (331)
T ss_dssp EETT---TTEEEEEEE
T ss_pred EECC---CCcEEEEcc
Confidence 9984 599998654
No 44
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=60.18 E-value=1.6e+02 Score=31.91 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=26.1
Q ss_pred cccc--ceEEcCCCCe-EEEEecCCCCCCCCcCccccCCCCCeeEEEEecCC
Q 005550 367 HHGG--QLLFGPTDGY-MYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDN 415 (691)
Q Consensus 367 H~GG--~L~FGP~DG~-LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg 415 (691)
.|.| .|++.| ||. ||+++=..-....+.... .....-.|+++|+..
T Consensus 145 ~N~G~E~la~~~-dG~~l~~~~E~~l~~d~~~~~~--~~~~~~ri~~~d~~~ 193 (326)
T PF13449_consen 145 NNRGFEGLAVSP-DGRTLFAAMESPLKQDGPRANP--DNGSPLRILRYDPKT 193 (326)
T ss_pred CCCCeEEEEECC-CCCEEEEEECccccCCCccccc--ccCceEEEEEecCCC
Confidence 5556 699999 998 998886653221110111 112234577777653
No 45
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=59.93 E-value=1.6e+02 Score=34.67 Aligned_cols=21 Identities=14% Similarity=0.493 Sum_probs=16.5
Q ss_pred eeeeeeCCCCCCCCEEEEEEeecC
Q 005550 270 LMGMAFHPNFAKNGRFFASFNCDK 293 (691)
Q Consensus 270 LLGiAfhPdF~~NG~~YvsYs~~~ 293 (691)
+=||++|| .+|.+|+..|...
T Consensus 352 pEgi~~~p---~~g~vY~a~T~~~ 372 (524)
T PF05787_consen 352 PEGITVNP---DDGEVYFALTNNS 372 (524)
T ss_pred ccCeeEeC---CCCEEEEEEecCC
Confidence 35788988 4789999998654
No 46
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=58.88 E-value=2e+02 Score=28.85 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=19.9
Q ss_pred eeEEEcCCCCceEEEEe-cCceEEEEEc
Q 005550 212 LNMVAHPDGSNRAFFSN-QEGKIWLATI 238 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~e-q~G~V~~~~~ 238 (691)
..++++|||. ++|++. .+|.|+++++
T Consensus 76 ~~~~~~~~g~-~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 76 ELFALHPNGK-ILYIANEDDNLVTVIDI 102 (300)
T ss_pred cEEEECCCCC-EEEEEcCCCCeEEEEEC
Confidence 4678899985 677775 5789998874
No 47
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=58.56 E-value=2.2e+02 Score=31.73 Aligned_cols=108 Identities=13% Similarity=0.206 Sum_probs=59.0
Q ss_pred hhhcCCCCCCCCeeecCCccc----cCCCCCCCCCCCcEEEEEecCce-eeEEEcCCCCceEEEEecCceEEEEEccCCC
Q 005550 168 CNAFGGTSKDGSVCFNGEPVT----LNNTGTPNPPQGLCLEKIGNGSY-LNMVAHPDGSNRAFFSNQEGKIWLATIPEQG 242 (691)
Q Consensus 168 c~~~~~~~~~~~~cf~~~~~~----~~~~~~~~~p~G~~le~va~Gl~-~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~g 242 (691)
|++....+...-+|-++...- +.+.+-.--|. ..-.+..|-. +.|+|+|+|-=-..|.|-+++|-++...+.
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~--~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~- 223 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA--DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA- 223 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccc--cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-
Confidence 776666556667777765441 11111110000 0112244555 899999999533567888999877654221
Q ss_pred CCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCE-EEE
Q 005550 243 LGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGR-FFA 287 (691)
Q Consensus 243 sg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~-~Yv 287 (691)
.++ + .+-+...-+.. .+.+..+.-.|..+| +|+ +|+
T Consensus 224 ~g~-~--~~lQ~i~tlP~--dF~g~~~~aaIhis~----dGrFLYa 260 (346)
T COG2706 224 VGK-F--EELQTIDTLPE--DFTGTNWAAAIHISP----DGRFLYA 260 (346)
T ss_pred Cce-E--EEeeeeccCcc--ccCCCCceeEEEECC----CCCEEEE
Confidence 122 1 12222222221 257888999999997 565 555
No 48
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=57.33 E-value=1.1e+02 Score=32.35 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=17.0
Q ss_pred CCCCceeeeeeCCCCCCCCEEEEEEe
Q 005550 265 DTEFGLMGMAFHPNFAKNGRFFASFN 290 (691)
Q Consensus 265 ~~e~GLLGiAfhPdF~~NG~~YvsYs 290 (691)
.+..-.-.+|||| +|.+|..-+
T Consensus 30 ~dsqairav~fhp----~g~lyavgs 51 (350)
T KOG0641|consen 30 EDSQAIRAVAFHP----AGGLYAVGS 51 (350)
T ss_pred cchhheeeEEecC----CCceEEecc
Confidence 3455678899999 899998654
No 49
>PTZ00421 coronin; Provisional
Probab=54.90 E-value=2.3e+02 Score=32.98 Aligned_cols=57 Identities=26% Similarity=0.447 Sum_probs=35.4
Q ss_pred eeEEEcC-CCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCC
Q 005550 212 LNMVAHP-DGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPN 278 (691)
Q Consensus 212 ~~m~~~p-DGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPd 278 (691)
+.++|.| |+ ++|+.+..+|.|+++++++.+.... ...+.. ...+.+.....++|||+
T Consensus 79 ~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~----~~~~l~-----~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 79 IDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQN----ISDPIV-----HLQGHTKKVGIVSFHPS 136 (493)
T ss_pred EEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccc----cCcceE-----EecCCCCcEEEEEeCcC
Confidence 6889999 65 3677778899999998764321000 011111 12234566788999984
No 50
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.40 E-value=75 Score=36.30 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=51.2
Q ss_pred hcCCCCCCCCeeecCCccccCCCCCCCCCCCcEEEEEec---Cce-eeEEEcCCCCceEEEEec-CceEEEEEccCCCCC
Q 005550 170 AFGGTSKDGSVCFNGEPVTLNNTGTPNPPQGLCLEKIGN---GSY-LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLG 244 (691)
Q Consensus 170 ~~~~~~~~~~~cf~~~~~~~~~~~~~~~p~G~~le~va~---Gl~-~~m~~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg 244 (691)
||=-+++|+.+||.+... |.++.++.. +.. ...+||||| -+|.+-- +|.|+++++.++ +
T Consensus 317 YllsAs~d~~w~Fsd~~~------------g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt~d~~vkiwdlks~-~- 380 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISS------------GSQLTVVSDETSDVEYTSAAFHPDG--LIFGTGTPDGVVKIWDLKSQ-T- 380 (506)
T ss_pred EEEEecCCceEEEEEccC------------CcEEEEEeeccccceeEEeeEcCCc--eEEeccCCCceEEEEEcCCc-c-
Confidence 344446777777765443 445555543 233 789999999 5777664 799999886331 1
Q ss_pred ceeeecCCCCCcCCccceeeCCCCc-eeeeeeCCCCCCCCEEEEEEe
Q 005550 245 ETMELDASSPFADLTDEVHFDTEFG-LMGMAFHPNFAKNGRFFASFN 290 (691)
Q Consensus 245 ~~l~~d~~~pflDi~~~V~~~~e~G-LLGiAfhPdF~~NG~~YvsYs 290 (691)
.+ -.+.++.| .-.|+|. .|||.-+.-.
T Consensus 381 -~~--------------a~Fpght~~vk~i~Fs----ENGY~Lat~a 408 (506)
T KOG0289|consen 381 -NV--------------AKFPGHTGPVKAISFS----ENGYWLATAA 408 (506)
T ss_pred -cc--------------ccCCCCCCceeEEEec----cCceEEEEEe
Confidence 00 12234444 3467765 7998766544
No 51
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=51.13 E-value=2e+02 Score=33.22 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=21.3
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEc
Q 005550 212 LNMVAHPDGSNRAFFSNQEGKIWLATI 238 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~V~~~~~ 238 (691)
..+.|.-||. +|++..-.|.||++++
T Consensus 348 ~~~~fsSdsk-~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 348 SDFTFSSDSK-ELLASGGTGEVYVWNL 373 (514)
T ss_pred eeEEEecCCc-EEEEEcCCceEEEEec
Confidence 4577888885 7888888999999976
No 52
>PRK01742 tolB translocation protein TolB; Provisional
Probab=50.79 E-value=3e+02 Score=30.86 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=24.5
Q ss_pred CCCcEEEEEecCce--eeEEEcCCCCceEEE-EecC--ceEEEEEc
Q 005550 198 PQGLCLEKIGNGSY--LNMVAHPDGSNRAFF-SNQE--GKIWLATI 238 (691)
Q Consensus 198 p~G~~le~va~Gl~--~~m~~~pDGs~RlfV-~eq~--G~V~~~~~ 238 (691)
..|.....+.++-. ...+++|||. ++.. .... ..||++++
T Consensus 191 ~dg~~~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl 235 (429)
T PRK01742 191 YDGFNQFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDL 235 (429)
T ss_pred CCCCCceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeC
Confidence 34555555554332 7899999997 4544 4333 46888765
No 53
>PRK02888 nitrous-oxide reductase; Validated
Probab=50.29 E-value=1e+02 Score=37.02 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=48.5
Q ss_pred EEEecCce-eeEEEcCCCCceEEEEec-CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCC--CceeeeeeCCCC
Q 005550 204 EKIGNGSY-LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTE--FGLMGMAFHPNF 279 (691)
Q Consensus 204 e~va~Gl~-~~m~~~pDGs~RlfV~eq-~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e--~GLLGiAfhPdF 279 (691)
..|..|-+ ++|.++|||. .++|+.+ ...|-++++.. .+.+ ++.+ ||..+.|...-| .|.|-.+|++
T Consensus 315 ~yIPVGKsPHGV~vSPDGk-ylyVanklS~tVSVIDv~k---~k~~-~~~~---~~~~~~vvaevevGlGPLHTaFDg-- 384 (635)
T PRK02888 315 RYVPVPKNPHGVNTSPDGK-YFIANGKLSPTVTVIDVRK---LDDL-FDGK---IKPRDAVVAEPELGLGPLHTAFDG-- 384 (635)
T ss_pred EEEECCCCccceEECCCCC-EEEEeCCCCCcEEEEEChh---hhhh-hhcc---CCccceEEEeeccCCCcceEEECC--
Confidence 33445555 9999999996 7899888 68888887521 1111 1111 455555554434 4568899986
Q ss_pred CCCCEEEEEEee
Q 005550 280 AKNGRFFASFNC 291 (691)
Q Consensus 280 ~~NG~~YvsYs~ 291 (691)
+|..|++-..
T Consensus 385 --~G~aytslf~ 394 (635)
T PRK02888 385 --RGNAYTTLFL 394 (635)
T ss_pred --CCCEEEeEee
Confidence 4778876654
No 54
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=49.78 E-value=1.3e+02 Score=34.64 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.5
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEc
Q 005550 212 LNMVAHPDGSNRAFFSNQEGKIWLATI 238 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~V~~~~~ 238 (691)
-...|+|+|+.|+|.+.+.-.+|.+++
T Consensus 261 ~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred ceeeecCCCceEEEecccceEEEEeec
Confidence 356899999989999999999999886
No 55
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=48.76 E-value=3.9e+02 Score=29.14 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=22.9
Q ss_pred CcEEEEEecCc--eeeEEEcCCCCceEEEEec-C--ceEEEEEc
Q 005550 200 GLCLEKIGNGS--YLNMVAHPDGSNRAFFSNQ-E--GKIWLATI 238 (691)
Q Consensus 200 G~~le~va~Gl--~~~m~~~pDGs~RlfV~eq-~--G~V~~~~~ 238 (691)
|-..+++.+.- .+..+++|||. +|+++.. . ..|+++++
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~ 221 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDL 221 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEEC
Confidence 44445554332 26788999996 4555443 2 46888764
No 56
>PRK02889 tolB translocation protein TolB; Provisional
Probab=47.94 E-value=4.5e+02 Score=29.53 Aligned_cols=26 Identities=12% Similarity=0.409 Sum_probs=17.8
Q ss_pred eeEEEcCCCCceEEEEe-cC--ceEEEEEc
Q 005550 212 LNMVAHPDGSNRAFFSN-QE--GKIWLATI 238 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~e-q~--G~V~~~~~ 238 (691)
...+++|||. ++.++. .. ..||++++
T Consensus 199 ~~p~wSPDG~-~la~~s~~~~~~~I~~~dl 227 (427)
T PRK02889 199 ISPAWSPDGT-KLAYVSFESKKPVVYVHDL 227 (427)
T ss_pred ccceEcCCCC-EEEEEEccCCCcEEEEEEC
Confidence 6788999996 554443 33 35888875
No 57
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=46.02 E-value=1.5e+02 Score=35.70 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=36.0
Q ss_pred CCCCCCCCCCcEEEEEecCce-eeEEEcCCCCceEEEEecCceEEEEEccCCC
Q 005550 191 NTGTPNPPQGLCLEKIGNGSY-LNMVAHPDGSNRAFFSNQEGKIWLATIPEQG 242 (691)
Q Consensus 191 ~~~~~~~p~G~~le~va~Gl~-~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~g 242 (691)
+++.-..|.|. +--+.||.. +.+.+.|-..+||-|+.-+|+|.++.++.+|
T Consensus 610 l~~PGrLPDgv-~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 610 LNEPGRLPDGV-MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred cCCCCCCCccc-ccccccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 33433446663 334455655 7888999778899999999999888876654
No 58
>PTZ00421 coronin; Provisional
Probab=45.90 E-value=3.2e+02 Score=31.75 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=36.1
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEE
Q 005550 212 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFAS 288 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~Yvs 288 (691)
..++|+|++.+.|+.+..+|.|+++++ +.+ +.+. ........+.+++|+| +|.+.++
T Consensus 129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl-~tg--~~~~-------------~l~~h~~~V~sla~sp----dG~lLat 185 (493)
T PTZ00421 129 GIVSFHPSAMNVLASAGADMVVNVWDV-ERG--KAVE-------------VIKCHSDQITSLEWNL----DGSLLCT 185 (493)
T ss_pred EEEEeCcCCCCEEEEEeCCCEEEEEEC-CCC--eEEE-------------EEcCCCCceEEEEEEC----CCCEEEE
Confidence 578999987655666678999999975 222 2111 1112234578999998 4555443
No 59
>PRK02889 tolB translocation protein TolB; Provisional
Probab=45.72 E-value=3.5e+02 Score=30.38 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=15.7
Q ss_pred eeEEEcCCCCceEEEEecCce--EEEEE
Q 005550 212 LNMVAHPDGSNRAFFSNQEGK--IWLAT 237 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~--V~~~~ 237 (691)
....++|||..-+|++++.|. ||.++
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred cCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 457788888643455556554 45443
No 60
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=45.68 E-value=80 Score=33.23 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=16.7
Q ss_pred CCccccceEEcCCCCeEEEEecCC
Q 005550 365 NGHHGGQLLFGPTDGYMYFMMGDG 388 (691)
Q Consensus 365 ~~H~GG~L~FGP~DG~LYis~GDg 388 (691)
..+.-..|.|+| +|.||.-+.|+
T Consensus 128 GW~~f~~vfa~~-~GvLY~i~~dg 150 (229)
T PF14517_consen 128 GWNDFDAVFAGP-NGVLYAITPDG 150 (229)
T ss_dssp SGGGEEEEEE-T-TS-EEEEETTE
T ss_pred CCccceEEEeCC-CccEEEEcCCC
Confidence 345566799999 99999999885
No 61
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=45.60 E-value=14 Score=40.40 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=24.0
Q ss_pred eEEEecccccceeeecCCCCCeEEEEEccCCC
Q 005550 448 EIWALGLRNPWRCSFDSDRPSYFMCADVGQDV 479 (691)
Q Consensus 448 EI~A~GlRNP~r~afDp~tg~~l~~~DvG~d~ 479 (691)
++---.|+|||++++.|.. .+|++|+|-+.
T Consensus 16 ~~tDp~L~N~WGia~~p~~--~~WVadngT~~ 45 (336)
T TIGR03118 16 QIVDPGLRNAWGLSYRPGG--PFWVANTGTGT 45 (336)
T ss_pred cccCccccccceeEecCCC--CEEEecCCcce
Confidence 3444568999999999975 49999998874
No 62
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=44.34 E-value=90 Score=22.00 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.4
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEE
Q 005550 212 LNMVAHPDGSNRAFFSNQEGKIWLAT 237 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~V~~~~ 237 (691)
..|+++|++. .+..+..+|.|++++
T Consensus 15 ~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 15 NSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred EEEEEecccc-cceeeCCCCEEEEEC
Confidence 7899999974 677777899998863
No 63
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=41.42 E-value=7.8e+02 Score=30.48 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=55.8
Q ss_pred ceEEcCCCCeEEEEecCCCCCCCCcC--ccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCC--------CC-
Q 005550 371 QLLFGPTDGYMYFMMGDGGGTADPYN--FSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDN--------PF- 439 (691)
Q Consensus 371 ~L~FGP~DG~LYis~GDgg~~~DP~~--~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DN--------PF- 439 (691)
.+.+++..|.+|+.+|.... |-+. +.-..+...+.|+-||+++.. =.|.-=.+|.|+ |-
T Consensus 379 ~~s~D~~~glvy~ptGn~~p--d~~g~~r~~~~n~y~~slvALD~~TGk--------~~W~~Q~~~hD~WD~D~~~~p~L 448 (764)
T TIGR03074 379 VASYDEKLGLVYLPMGNQTP--DQWGGDRTPADEKYSSSLVALDATTGK--------ERWVFQTVHHDLWDMDVPAQPSL 448 (764)
T ss_pred ceEEcCCCCeEEEeCCCccc--cccCCccccCcccccceEEEEeCCCCc--------eEEEecccCCccccccccCCceE
Confidence 47888877999999998653 1111 111224678999999997620 122111123322 21
Q ss_pred CCC---CCCCCeEEEecccccceeeecCCCCCeEEE
Q 005550 440 SED---SGLQPEIWALGLRNPWRCSFDSDRPSYFMC 472 (691)
Q Consensus 440 ~~~---~~~~pEI~A~GlRNP~r~afDp~tg~~l~~ 472 (691)
++- .+....+...+=+|-+-.++|+.||+.||-
T Consensus 449 ~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 449 VDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 111 122334778888999999999999986664
No 64
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=41.33 E-value=65 Score=36.55 Aligned_cols=65 Identities=25% Similarity=0.494 Sum_probs=46.0
Q ss_pred eeEEEcCCCCceEEEEec--------------CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCC
Q 005550 212 LNMVAHPDGSNRAFFSNQ--------------EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHP 277 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq--------------~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhP 277 (691)
..+++.||| +|||+-- .|+|+..+ ..+ .+. ...||-+ .+|++.+-|..-|+++||
T Consensus 180 ~~l~f~pDG--~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~--~a~---~~~--~d~p~~~--~~i~s~G~RN~qGl~w~P 248 (399)
T COG2133 180 GRLVFGPDG--KLYVTTGSNGDPALAQDNVSLAGKVLRID--RAG---IIP--ADNPFPN--SEIWSYGHRNPQGLAWHP 248 (399)
T ss_pred ccEEECCCC--cEEEEeCCCCCcccccCccccccceeeec--cCc---ccc--cCCCCCC--cceEEeccCCccceeecC
Confidence 579999999 6999752 36666543 222 122 2355655 578899999999999999
Q ss_pred CCCCCCEEEEEEe
Q 005550 278 NFAKNGRFFASFN 290 (691)
Q Consensus 278 dF~~NG~~YvsYs 290 (691)
..|.+|+.-.
T Consensus 249 ---~tg~Lw~~e~ 258 (399)
T COG2133 249 ---VTGALWTTEH 258 (399)
T ss_pred ---CCCcEEEEec
Confidence 4789988654
No 65
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=40.63 E-value=5.7e+02 Score=29.12 Aligned_cols=69 Identities=25% Similarity=0.448 Sum_probs=45.4
Q ss_pred CcEEEEEecCce---eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeC
Q 005550 200 GLCLEKIGNGSY---LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFH 276 (691)
Q Consensus 200 G~~le~va~Gl~---~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfh 276 (691)
+.++.++. |-. ....|+|+| +++.-..-+|.|+++++. . ++.+ ++...-..+..+++|.
T Consensus 236 ~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~-~--~~~~-------------~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 236 GRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVR-T--GECV-------------RKLKGHSDGISGLAFS 297 (456)
T ss_pred CeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEecc-C--CeEE-------------EeeeccCCceEEEEEC
Confidence 45666665 544 789999999 567777779999999753 2 3322 2333344588899998
Q ss_pred CCCCCCCEEEEEEe
Q 005550 277 PNFAKNGRFFASFN 290 (691)
Q Consensus 277 PdF~~NG~~YvsYs 290 (691)
| +|.+.++-+
T Consensus 298 ~----d~~~l~s~s 307 (456)
T KOG0266|consen 298 P----DGNLLVSAS 307 (456)
T ss_pred C----CCCEEEEcC
Confidence 7 556655444
No 66
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.98 E-value=2.4e+02 Score=31.75 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=59.8
Q ss_pred CCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEeecCCCCC
Q 005550 218 PDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNCDKVKWP 297 (691)
Q Consensus 218 pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs~~~~~~~ 297 (691)
.||.+-+....|++.|++++++. +.-| + ...+-+.+.-|+|||| -|++-++-..++
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~t---g~cL--------~-----tL~ghdnwVr~~af~p----~Gkyi~ScaDDk---- 356 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVST---GMCL--------F-----TLVGHDNWVRGVAFSP----GGKYILSCADDK---- 356 (406)
T ss_pred CCCccEEEeecccceEEEEeccC---CeEE--------E-----EEecccceeeeeEEcC----CCeEEEEEecCC----
Confidence 34555677778899999988642 2211 1 1235577889999998 677666544321
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEEecCCCCCccccceEEcCC
Q 005550 298 GCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTMGLSFNGHHGGQLLFGPT 377 (691)
Q Consensus 298 ~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t~~~~~~~~s~~~~~~~~~~~~Il~~~~P~~~H~GG~L~FGP~ 377 (691)
.+||..+... +-+. .++...|.--.|.|..
T Consensus 357 ------------------------------tlrvwdl~~~------------------~cmk-~~~ah~hfvt~lDfh~- 386 (406)
T KOG0295|consen 357 ------------------------------TLRVWDLKNL------------------QCMK-TLEAHEHFVTSLDFHK- 386 (406)
T ss_pred ------------------------------cEEEEEeccc------------------eeee-ccCCCcceeEEEecCC-
Confidence 3577655421 1111 2344567777888865
Q ss_pred CCeEEEEecCC
Q 005550 378 DGYMYFMMGDG 388 (691)
Q Consensus 378 DG~LYis~GDg 388 (691)
..+||.+|.-
T Consensus 387 -~~p~VvTGsV 396 (406)
T KOG0295|consen 387 -TAPYVVTGSV 396 (406)
T ss_pred -CCceEEeccc
Confidence 5779999974
No 67
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=39.86 E-value=85 Score=34.26 Aligned_cols=59 Identities=27% Similarity=0.571 Sum_probs=33.8
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEE
Q 005550 212 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFA 287 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~Yv 287 (691)
-+|.|.||| +++++.|.|.|+.-+.++ +.+.. .+++.++. ...-|+|++|+.| ++.+|+
T Consensus 190 q~~gf~~~~--~lw~~~~Gg~~~~s~~~~--~~~~w----~~~~~~~~-----~~~~~~ld~a~~~----~~~~wa 248 (302)
T PF14870_consen 190 QSMGFSPDG--NLWMLARGGQIQFSDDPD--DGETW----SEPIIPIK-----TNGYGILDLAYRP----PNEIWA 248 (302)
T ss_dssp EEEEE-TTS---EEEEETTTEEEEEE-TT--EEEEE-------B-TTS-----S--S-EEEEEESS----SS-EEE
T ss_pred hhceecCCC--CEEEEeCCcEEEEccCCC--Ccccc----ccccCCcc-----cCceeeEEEEecC----CCCEEE
Confidence 589999998 699999999999865332 22332 23344431 2456899999996 455654
No 68
>PRK04792 tolB translocation protein TolB; Provisional
Probab=39.46 E-value=6.2e+02 Score=28.75 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=24.0
Q ss_pred CCCcEEEEEecCce--eeEEEcCCCCceEEEEecCc--eEEEEEc
Q 005550 198 PQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQEG--KIWLATI 238 (691)
Q Consensus 198 p~G~~le~va~Gl~--~~m~~~pDGs~RlfV~eq~G--~V~~~~~ 238 (691)
..|.....+.++-. ...+++|||..=+|+..+.| .||++++
T Consensus 205 ~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl 249 (448)
T PRK04792 205 YDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDI 249 (448)
T ss_pred CCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEEC
Confidence 34444445554433 56789999973334454444 5888764
No 69
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=39.14 E-value=1.3e+02 Score=33.26 Aligned_cols=104 Identities=21% Similarity=0.309 Sum_probs=59.2
Q ss_pred cchhhhhhcCCCCCCCCeeecCCccccCCCCCC-----CCCCCcEEEEEecCce----eeEEEcC---CCCceEEEEec-
Q 005550 163 SKADFCNAFGGTSKDGSVCFNGEPVTLNNTGTP-----NPPQGLCLEKIGNGSY----LNMVAHP---DGSNRAFFSNQ- 229 (691)
Q Consensus 163 ~~~~fc~~~~~~~~~~~~cf~~~~~~~~~~~~~-----~~p~G~~le~va~Gl~----~~m~~~p---DGs~RlfV~eq- 229 (691)
...|-|+.-|++..|+..-|= ..+..+.+. ..-.|=|+-.|.++-- ..|-++| || ||||.+.
T Consensus 147 a~eDRCHLNGlA~~~g~p~yV---Ta~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWhdg--rLwvldsg 221 (335)
T TIGR03032 147 APEDRCHLNGMALDDGEPRYV---TALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWYQG--KLWLLNSG 221 (335)
T ss_pred CccCceeecceeeeCCeEEEE---EEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEeCC--eEEEEECC
Confidence 356889999998888764441 111111110 1233555555655532 5677777 56 7888887
Q ss_pred CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEeecC
Q 005550 230 EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFNCDK 293 (691)
Q Consensus 230 ~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs~~~ 293 (691)
.|+|..++ +++|.-++ ...=.+=.-|++|+ ..++||+-|...
T Consensus 222 tGev~~vD-~~~G~~e~----------------Va~vpG~~rGL~f~-----G~llvVgmSk~R 263 (335)
T TIGR03032 222 RGELGYVD-PQAGKFQP----------------VAFLPGFTRGLAFA-----GDFAFVGLSKLR 263 (335)
T ss_pred CCEEEEEc-CCCCcEEE----------------EEECCCCCccccee-----CCEEEEEecccc
Confidence 58888775 33343111 11112234677887 567888887654
No 70
>PRK04922 tolB translocation protein TolB; Provisional
Probab=38.68 E-value=5.7e+02 Score=28.64 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=16.6
Q ss_pred eeEEEcCCCCceEEEEecCce--EEEEEc
Q 005550 212 LNMVAHPDGSNRAFFSNQEGK--IWLATI 238 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~--V~~~~~ 238 (691)
....++|||..-+|++++.|. ||++++
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 457788888633455556664 666553
No 71
>PRK03629 tolB translocation protein TolB; Provisional
Probab=38.52 E-value=6.2e+02 Score=28.49 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=23.7
Q ss_pred CCcEEEEEecCce--eeEEEcCCCCceEEEEecC--ceEEEEEc
Q 005550 199 QGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQE--GKIWLATI 238 (691)
Q Consensus 199 ~G~~le~va~Gl~--~~m~~~pDGs~RlfV~eq~--G~V~~~~~ 238 (691)
.|-..+.+..+-. ...+++|||..=+|+.... ..||++++
T Consensus 187 dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl 230 (429)
T PRK03629 187 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL 230 (429)
T ss_pred CCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEEC
Confidence 3444455554433 7899999997333444333 46887764
No 72
>PRK00178 tolB translocation protein TolB; Provisional
Probab=37.94 E-value=6e+02 Score=28.17 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=25.0
Q ss_pred CCCcEEEEEecCce--eeEEEcCCCCceE-EEEecC--ceEEEEEc
Q 005550 198 PQGLCLEKIGNGSY--LNMVAHPDGSNRA-FFSNQE--GKIWLATI 238 (691)
Q Consensus 198 p~G~~le~va~Gl~--~~m~~~pDGs~Rl-fV~eq~--G~V~~~~~ 238 (691)
..|-...++..+-. ...+++|||. +| |+..+. ..||++++
T Consensus 186 ~~g~~~~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l 230 (430)
T PRK00178 186 YDGARAVTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNL 230 (430)
T ss_pred CCCCCceEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEEC
Confidence 44555555544332 6789999996 55 555444 36888764
No 73
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=37.17 E-value=3.7e+02 Score=30.57 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=37.2
Q ss_pred eeEEEcCCCCceEEEEe-cCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 005550 212 LNMVAHPDGSNRAFFSN-QEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 290 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~e-q~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 290 (691)
..+.|.|||. .+++- .+++|+++++.+++ ..+ .+..+-+.....++|+| .|.+.++-+
T Consensus 207 ~~~~fs~d~~--~l~s~s~D~tiriwd~~~~~--~~~-------------~~l~gH~~~v~~~~f~p----~g~~i~Sgs 265 (456)
T KOG0266|consen 207 SDVAFSPDGS--YLLSGSDDKTLRIWDLKDDG--RNL-------------KTLKGHSTYVTSVAFSP----DGNLLVSGS 265 (456)
T ss_pred eeeEECCCCc--EEEEecCCceEEEeeccCCC--eEE-------------EEecCCCCceEEEEecC----CCCEEEEec
Confidence 5789999994 44444 57899998863332 222 12223445568999998 456666554
Q ss_pred e
Q 005550 291 C 291 (691)
Q Consensus 291 ~ 291 (691)
.
T Consensus 266 ~ 266 (456)
T KOG0266|consen 266 D 266 (456)
T ss_pred C
Confidence 3
No 74
>PRK01029 tolB translocation protein TolB; Provisional
Probab=37.07 E-value=6.6e+02 Score=28.39 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=25.3
Q ss_pred CCCcEEEEEecCce--eeEEEcCCCCce--EEEEecCc--eEEEEEc
Q 005550 198 PQGLCLEKIGNGSY--LNMVAHPDGSNR--AFFSNQEG--KIWLATI 238 (691)
Q Consensus 198 p~G~~le~va~Gl~--~~m~~~pDGs~R--lfV~eq~G--~V~~~~~ 238 (691)
..|-..+.+..+-. ..=+++|||.+. +|++.+.| .||+.++
T Consensus 172 ~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l 218 (428)
T PRK01029 172 YDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSL 218 (428)
T ss_pred CCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEEC
Confidence 44544455554332 556899999743 34777765 5888765
No 75
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=36.75 E-value=4e+02 Score=30.60 Aligned_cols=55 Identities=25% Similarity=0.450 Sum_probs=33.5
Q ss_pred eeEEEcCCCCceEEEEec---CceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEE
Q 005550 212 LNMVAHPDGSNRAFFSNQ---EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFAS 288 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq---~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~Yvs 288 (691)
-.++|+|||| +..+.- -|+||=+. .| .-+ -||+. --.-.++++|.| ||+--.+
T Consensus 307 ~~iaf~~DGS--L~~tGGlD~~~RvWDlR---tg--r~i------m~L~g-------H~k~I~~V~fsP----NGy~lAT 362 (459)
T KOG0272|consen 307 FSIAFQPDGS--LAATGGLDSLGRVWDLR---TG--RCI------MFLAG-------HIKEILSVAFSP----NGYHLAT 362 (459)
T ss_pred ceeEecCCCc--eeeccCccchhheeecc---cC--cEE------EEecc-------cccceeeEeECC----CceEEee
Confidence 3789999996 666553 58888542 22 211 23332 223468999998 8987554
Q ss_pred Ee
Q 005550 289 FN 290 (691)
Q Consensus 289 Ys 290 (691)
-+
T Consensus 363 gs 364 (459)
T KOG0272|consen 363 GS 364 (459)
T ss_pred cC
Confidence 33
No 76
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.37 E-value=67 Score=31.89 Aligned_cols=71 Identities=24% Similarity=0.373 Sum_probs=46.7
Q ss_pred CCCccccceeeecCCCCcccC-CcEEEEEeccceeEEeecCCCCCCCeeEEEeeeecCCCCcccccccCCCCCCCCCccc
Q 005550 536 EGSASITGGYFYRSMTDPCMF-GRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPSLGYIY 614 (691)
Q Consensus 536 ~Gs~S~tGG~vYrG~~fP~l~-G~y~fgD~~sg~lw~~~~~p~~~G~~~~~~i~f~c~~~~P~~c~~~~g~~~~~~gri~ 614 (691)
+|+.||+ -.|-.|++-|+++ |..+| ||++.++|...|...+-++ +|...|-..|++
T Consensus 44 t~seSPi-VVVLSgSMePaF~RGDlLf-------L~N~~~~p~~vGdivVf~v---------------egR~IPiVHRvi 100 (180)
T KOG3342|consen 44 TGSESPI-VVVLSGSMEPAFHRGDLLF-------LTNRNEDPIRVGDIVVFKV---------------EGREIPIVHRVI 100 (180)
T ss_pred eCCCCCE-EEEEcCCcCcccccccEEE-------EecCCCCcceeccEEEEEE---------------CCccCchhHHHH
Confidence 4555665 2566788888875 77766 4677777776665432222 233334467888
Q ss_pred eEEEcCCCcEEEEeC
Q 005550 615 SFGEDNRKDIFILTS 629 (691)
Q Consensus 615 sf~ed~dGeLYvlts 629 (691)
..-|..+|++.++|.
T Consensus 101 K~he~~~~~~~~LTK 115 (180)
T KOG3342|consen 101 KQHEKSNGHIKFLTK 115 (180)
T ss_pred HHhcccCCcEEEEec
Confidence 888989999988874
No 77
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=36.16 E-value=3.7e+02 Score=32.11 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=16.2
Q ss_pred eeeeeCCCCCCCCEEEEEEeecC
Q 005550 271 MGMAFHPNFAKNGRFFASFNCDK 293 (691)
Q Consensus 271 LGiAfhPdF~~NG~~YvsYs~~~ 293 (691)
=+|++|| .+|.+|+.+|...
T Consensus 420 E~i~~~p---~~g~Vy~~lTNn~ 439 (616)
T COG3211 420 EWIAVNP---GTGEVYFTLTNNG 439 (616)
T ss_pred cceeecC---CcceEEEEeCCCC
Confidence 4799998 4789999998654
No 78
>PRK01029 tolB translocation protein TolB; Provisional
Probab=35.54 E-value=7e+02 Score=28.21 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=18.5
Q ss_pred eeEEEcCCCCceEEEEecCc--eEEEEEc
Q 005550 212 LNMVAHPDGSNRAFFSNQEG--KIWLATI 238 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G--~V~~~~~ 238 (691)
...+++|||..=+|+.++.| .||++.+
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 56789999974355566667 5776654
No 79
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=34.69 E-value=61 Score=24.13 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=20.5
Q ss_pred CCeEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCC
Q 005550 378 DGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDN 415 (691)
Q Consensus 378 DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg 415 (691)
||.||-++.-++. .-.|.|.||++++
T Consensus 1 dg~lYGTT~~GG~------------~~~GTvf~~~~~g 26 (34)
T TIGR03803 1 GGTLYGTTSGGGA------------SGFGTLYRLSTAG 26 (34)
T ss_pred CCcEEEEcccCCC------------CCceeEEEEcCCC
Confidence 6889999975553 2379999999987
No 80
>PRK05137 tolB translocation protein TolB; Provisional
Probab=34.39 E-value=7e+02 Score=27.91 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=24.5
Q ss_pred CCcEEEEEecCce--eeEEEcCCCCceEEEEec--CceEEEEEc
Q 005550 199 QGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQ--EGKIWLATI 238 (691)
Q Consensus 199 ~G~~le~va~Gl~--~~m~~~pDGs~RlfV~eq--~G~V~~~~~ 238 (691)
.|-..+.+..+-. ...+++|||..=+|+... ...||++++
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl 233 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDL 233 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEEC
Confidence 3444455554433 678899999732444443 357998874
No 81
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.30 E-value=2.4e+02 Score=34.31 Aligned_cols=27 Identities=52% Similarity=0.874 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCCcccc--ceEEcCCCCeEEEEecCC
Q 005550 354 VRRIFTMGLSFNGHHGG--QLLFGPTDGYMYFMMGDG 388 (691)
Q Consensus 354 ~~~Il~~~~P~~~H~GG--~L~FGP~DG~LYis~GDg 388 (691)
..|||. .|.+- .|.|.| +|. |+++|+.
T Consensus 569 ~VRiF~------GH~~~V~al~~Sp-~Gr-~LaSg~e 597 (707)
T KOG0263|consen 569 SVRIFT------GHKGPVTALAFSP-CGR-YLASGDE 597 (707)
T ss_pred EEEEec------CCCCceEEEEEcC-CCc-eEeeccc
Confidence 356874 47765 699999 886 8888884
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=33.42 E-value=4.5e+02 Score=28.62 Aligned_cols=37 Identities=27% Similarity=0.532 Sum_probs=27.3
Q ss_pred CcEEEEEec-CceeeEEEcCCCCceEEEEecCceEEEEE
Q 005550 200 GLCLEKIGN-GSYLNMVAHPDGSNRAFFSNQEGKIWLAT 237 (691)
Q Consensus 200 G~~le~va~-Gl~~~m~~~pDGs~RlfV~eq~G~V~~~~ 237 (691)
+=|..++.+ |-...+.+.|||. .+.|..++-.|-.++
T Consensus 97 ~k~~~~i~~~~eni~i~wsp~g~-~~~~~~kdD~it~id 134 (313)
T KOG1407|consen 97 GKCTARIETKGENINITWSPDGE-YIAVGNKDDRITFID 134 (313)
T ss_pred CcEEEEeeccCcceEEEEcCCCC-EEEEecCcccEEEEE
Confidence 445666654 4459999999996 588888888887665
No 83
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=32.48 E-value=4.1e+02 Score=26.55 Aligned_cols=84 Identities=20% Similarity=0.349 Sum_probs=0.0
Q ss_pred CcEEEEEecCceeeEEEcCCCCceEEEE----ecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeee
Q 005550 200 GLCLEKIGNGSYLNMVAHPDGSNRAFFS----NQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAF 275 (691)
Q Consensus 200 G~~le~va~Gl~~~m~~~pDGs~RlfV~----eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAf 275 (691)
+-.+..+.++-.-.+.+.|+| ++++. ...|.|.+++..+. ..+..........+++
T Consensus 92 ~~~i~~~~~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~------------------~~i~~~~~~~~t~~~W 151 (194)
T PF08662_consen 92 GKKIFSFGTQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKK------------------KKISTFEHSDATDVEW 151 (194)
T ss_pred ccEeEeecCCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCC------------------EEeeccccCcEEEEEE
Q ss_pred CCCCCCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEE
Q 005550 276 HPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYT 335 (691)
Q Consensus 276 hPdF~~NG~~YvsYs~~~~~~~~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t 335 (691)
+| +|+.+++.+... ++.-||| .+|..|.
T Consensus 152 sP----dGr~~~ta~t~~---------------------r~~~dng-------~~Iw~~~ 179 (194)
T PF08662_consen 152 SP----DGRYLATATTSP---------------------RLRVDNG-------FKIWSFQ 179 (194)
T ss_pred cC----CCCEEEEEEecc---------------------ceecccc-------EEEEEec
No 84
>PRK04792 tolB translocation protein TolB; Provisional
Probab=32.06 E-value=8e+02 Score=27.85 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=18.2
Q ss_pred eeEEEcCCCCceEE-EEecCce--EEEEEc
Q 005550 212 LNMVAHPDGSNRAF-FSNQEGK--IWLATI 238 (691)
Q Consensus 212 ~~m~~~pDGs~Rlf-V~eq~G~--V~~~~~ 238 (691)
...+++|||. +++ +.+++|. ||++++
T Consensus 265 ~~~~wSPDG~-~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 265 GAPRFSPDGK-KLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CCeeECCCCC-EEEEEEeCCCCeEEEEEEC
Confidence 4678999997 454 4566774 887764
No 85
>PRK04922 tolB translocation protein TolB; Provisional
Probab=28.65 E-value=8.7e+02 Score=27.19 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCcEEEEEecCce--eeEEEcCCCCceEEEEecC--ceEEEEEc
Q 005550 199 QGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQE--GKIWLATI 238 (691)
Q Consensus 199 ~G~~le~va~Gl~--~~m~~~pDGs~RlfV~eq~--G~V~~~~~ 238 (691)
.|-....+.++-. ...++.|||..=+|+.... ..||++++
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl 235 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDL 235 (433)
T ss_pred CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEEC
Confidence 3444555554433 6788999997333444333 46888765
No 86
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=28.56 E-value=5e+02 Score=29.36 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=21.1
Q ss_pred Ccccc--ceEEcCCCCeEEEEecCCCCCCCCcCccccCCCCCeeEEEEe
Q 005550 366 GHHGG--QLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLD 412 (691)
Q Consensus 366 ~H~GG--~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRId 412 (691)
.|-|- .|+|.+ ||.|..+--| .|.|+|+-
T Consensus 171 aH~~~lAalafs~-~G~llATASe-----------------KGTVIRVf 201 (391)
T KOG2110|consen 171 AHKGPLAALAFSP-DGTLLATASE-----------------KGTVIRVF 201 (391)
T ss_pred ecCCceeEEEECC-CCCEEEEecc-----------------CceEEEEE
Confidence 57665 699999 9997544333 67899974
No 87
>PRK03629 tolB translocation protein TolB; Provisional
Probab=27.07 E-value=9.4e+02 Score=27.05 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=18.4
Q ss_pred eeEEEcCCCCceEEEE-ecCc--eEEEEEc
Q 005550 212 LNMVAHPDGSNRAFFS-NQEG--KIWLATI 238 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~-eq~G--~V~~~~~ 238 (691)
...+++|||. +|+++ ++.| .||++++
T Consensus 246 ~~~~~SPDG~-~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 246 GAPAFSPDGS-KLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CCeEECCCCC-EEEEEEcCCCCcEEEEEEC
Confidence 4678999997 45544 5666 4888874
No 88
>PRK05137 tolB translocation protein TolB; Provisional
Probab=26.64 E-value=9.4e+02 Score=26.91 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=17.6
Q ss_pred eeEEEcCCCCceE-EEEecCc--eEEEEEc
Q 005550 212 LNMVAHPDGSNRA-FFSNQEG--KIWLATI 238 (691)
Q Consensus 212 ~~m~~~pDGs~Rl-fV~eq~G--~V~~~~~ 238 (691)
...+++|||. +| |...++| .||++++
T Consensus 249 ~~~~~SPDG~-~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 249 FAPRFSPDGR-KVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred cCcEECCCCC-EEEEEEecCCCceEEEEEC
Confidence 5678999997 45 4455555 4887764
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=26.28 E-value=6.3e+02 Score=29.26 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=19.3
Q ss_pred CCCceeeeeeCCCCCCCCEEEEEEeec
Q 005550 266 TEFGLMGMAFHPNFAKNGRFFASFNCD 292 (691)
Q Consensus 266 ~e~GLLGiAfhPdF~~NG~~YvsYs~~ 292 (691)
.+-++...+||| +|.+|..++.+
T Consensus 346 s~v~~ts~~fHp----DgLifgtgt~d 368 (506)
T KOG0289|consen 346 SDVEYTSAAFHP----DGLIFGTGTPD 368 (506)
T ss_pred ccceeEEeeEcC----CceEEeccCCC
Confidence 556789999999 69999998864
No 90
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=25.98 E-value=5.8e+02 Score=24.31 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=33.2
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCC
Q 005550 212 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPN 278 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPd 278 (691)
..+.+.|++. .++++..+|.|+++++.. + +.+ ......+.....++++|+
T Consensus 55 ~~~~~~~~~~-~l~~~~~~~~i~i~~~~~-~--~~~-------------~~~~~~~~~i~~~~~~~~ 104 (289)
T cd00200 55 RDVAASADGT-YLASGSSDKTIRLWDLET-G--ECV-------------RTLTGHTSYVSSVAFSPD 104 (289)
T ss_pred eEEEECCCCC-EEEEEcCCCeEEEEEcCc-c--cce-------------EEEeccCCcEEEEEEcCC
Confidence 4889999984 688888899999987532 1 111 111123446788999986
No 91
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=25.29 E-value=92 Score=23.64 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=25.8
Q ss_pred eeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCeEEEecccccceeeecC
Q 005550 406 GKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDS 464 (691)
Q Consensus 406 GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pEI~A~GlRNP~r~afDp 464 (691)
-+|.|.+.||. .+..|..-++.+|.++++|+
T Consensus 12 ~~I~~a~~dGs----------------------------~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 12 PSIERANLDGS----------------------------NRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEEETTST----------------------------SEEEEEESSTSSEEEEEEET
T ss_pred cEEEEEECCCC----------------------------CeEEEEECCCCCcCEEEECC
Confidence 58999999983 14578899999999999985
No 92
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=25.16 E-value=2.4e+02 Score=33.58 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=59.4
Q ss_pred ceEEcCCCCeEEEEecCCCCCCCCcCccccC--CCCCeeEEEEecCCCCchhhhhhcccCCCcCCCCCCCCCCCCCCCCe
Q 005550 371 QLLFGPTDGYMYFMMGDGGGTADPYNFSQNK--KSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPE 448 (691)
Q Consensus 371 ~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~--~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP~DNPF~~~~~~~pE 448 (691)
.|.++|..|.+|++.=++++..| .+.|+ +...|.|+|+-+.+.. .......|..|-. ..||=+-+.++...
T Consensus 421 ~i~~~p~~g~Vy~~lTNn~~r~~---~~aNpr~~n~~G~I~r~~p~~~d---~t~~~ftWdlF~~-aG~~~~~~~~~~~~ 493 (616)
T COG3211 421 WIAVNPGTGEVYFTLTNNGKRSD---DAANPRAKNGYGQIVRWIPATGD---HTDTKFTWDLFVE-AGNPSVLEGGASAN 493 (616)
T ss_pred ceeecCCcceEEEEeCCCCcccc---ccCCCcccccccceEEEecCCCC---ccCccceeeeeee-cCCccccccccccC
Confidence 48888866789999988876532 22232 4679999999886631 1223344444432 34543332222122
Q ss_pred EEEecccccceeeecCCCCCeEEEEEccCC
Q 005550 449 IWALGLRNPWRCSFDSDRPSYFMCADVGQD 478 (691)
Q Consensus 449 I~A~GlRNP~r~afDp~tg~~l~~~DvG~d 478 (691)
|=+-=|-+|=.|+||+. | +||+..-|..
T Consensus 494 ~~~~~f~~PDnl~fD~~-G-rLWi~TDg~~ 521 (616)
T COG3211 494 INANWFNSPDNLAFDPW-G-RLWIQTDGSG 521 (616)
T ss_pred cccccccCCCceEECCC-C-CEEEEecCCC
Confidence 22212556999999998 4 6998766654
No 93
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=24.55 E-value=5e+02 Score=29.66 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=34.8
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCC
Q 005550 212 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFA 280 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~ 280 (691)
.-++++|||. ++--.-++|.|.+++ |..|. .+ .++ ..+--.+..++|++|--.
T Consensus 161 lcvawsPDgk-~iASG~~dg~I~lwd-pktg~--~~----g~~--------l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 161 LCVAWSPDGK-KIASGSKDGSIRLWD-PKTGQ--QI----GRA--------LRGHKKWITALAWEPLHL 213 (480)
T ss_pred EEEEECCCcc-hhhccccCCeEEEec-CCCCC--cc----ccc--------ccCcccceeEEeeccccc
Confidence 4678999995 444455799999986 65443 21 111 223456889999998544
No 94
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=24.47 E-value=2.7e+02 Score=31.90 Aligned_cols=61 Identities=25% Similarity=0.406 Sum_probs=39.4
Q ss_pred eeEEEcCCC-CceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEEEEe
Q 005550 212 LNMVAHPDG-SNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFASFN 290 (691)
Q Consensus 212 ~~m~~~pDG-s~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~YvsYs 290 (691)
.+++|+|.- ...|--+.-+|.|+++.+. .++|+.||. +-..-+-.+|||| +|++-.+-+
T Consensus 221 ~~~~fhP~~~~~~lat~s~Dgtvklw~~~-----------~e~~l~~l~-----gH~~RVs~VafHP----sG~~L~Tas 280 (459)
T KOG0272|consen 221 GAAVFHPVDSDLNLATASADGTVKLWKLS-----------QETPLQDLE-----GHLARVSRVAFHP----SGKFLGTAS 280 (459)
T ss_pred eeEEEccCCCccceeeeccCCceeeeccC-----------CCcchhhhh-----cchhhheeeeecC----CCceeeecc
Confidence 789999984 3234445568999888641 134555552 2335567899999 798877655
Q ss_pred ec
Q 005550 291 CD 292 (691)
Q Consensus 291 ~~ 292 (691)
.|
T Consensus 281 fD 282 (459)
T KOG0272|consen 281 FD 282 (459)
T ss_pred cc
Confidence 44
No 95
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=23.80 E-value=70 Score=24.00 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=15.0
Q ss_pred ccceEEEcCCCcEEEEe
Q 005550 612 YIYSFGEDNRKDIFILT 628 (691)
Q Consensus 612 ri~sf~ed~dGeLYvlt 628 (691)
++.+++.|.+|.+||+-
T Consensus 14 ~~~~IavD~~GNiYv~G 30 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTG 30 (38)
T ss_pred eEEEEEECCCCCEEEEE
Confidence 46789999999999985
No 96
>PTZ00420 coronin; Provisional
Probab=23.78 E-value=1.2e+03 Score=27.94 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=33.6
Q ss_pred eeEEEcCCCCceEE-EEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCCCCCCEEEE
Q 005550 212 LNMVAHPDGSNRAF-FSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFAKNGRFFA 287 (691)
Q Consensus 212 ~~m~~~pDGs~Rlf-V~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF~~NG~~Yv 287 (691)
..++++|++. .++ .+..+|.|+++++. .+ +.+ . .+ .....+..++||| +|.+.+
T Consensus 129 ~sVaf~P~g~-~iLaSgS~DgtIrIWDl~-tg--~~~--------~----~i--~~~~~V~Slswsp----dG~lLa 183 (568)
T PTZ00420 129 SIIDWNPMNY-YIMCSSGFDSFVNIWDIE-NE--KRA--------F----QI--NMPKKLSSLKWNI----KGNLLS 183 (568)
T ss_pred EEEEECCCCC-eEEEEEeCCCeEEEEECC-CC--cEE--------E----EE--ecCCcEEEEEECC----CCCEEE
Confidence 5789999985 344 45679999999752 22 111 0 11 1124578999998 466554
No 97
>PRK01742 tolB translocation protein TolB; Provisional
Probab=23.41 E-value=7.8e+02 Score=27.58 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=11.6
Q ss_pred cceEEcCCCCeEEEEecC
Q 005550 370 GQLLFGPTDGYMYFMMGD 387 (691)
Q Consensus 370 G~L~FGP~DG~LYis~GD 387 (691)
..+.|.| ||.+.++...
T Consensus 375 ~~~~~sP-dG~~i~~~s~ 391 (429)
T PRK01742 375 ESPSISP-NGIMIIYSST 391 (429)
T ss_pred CCceECC-CCCEEEEEEc
Confidence 4688999 9965555443
No 98
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=21.81 E-value=2.9e+02 Score=32.30 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=0.0
Q ss_pred cceEEcCCCCeEEEEecCCCCCCCCcCccccCCCC--CeeEEEEecCCCCchhhhhhcccCCC--------------cCC
Q 005550 370 GQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSL--LGKITRLDVDNIPSAAEIEKLGLWGS--------------YSI 433 (691)
Q Consensus 370 G~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl--~GKILRIdvDg~p~~~~~~~~g~~g~--------------YsI 433 (691)
+.+.++|..|.|||.||... |++..+.+.+- .-+|+-||+++ |. |.+
T Consensus 237 ~~~s~D~~~~lvy~~tGnp~----p~~~~~r~gdnl~~~s~vAld~~T-------------G~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 237 GTGSYDPETNLIYFGTGNPS----PWNSHLRPGDNLYTSSIVARDPDT-------------GKIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred CceeEcCCCCeEEEeCCCCC----CCCCCCCCCCCccceeEEEEcccc-------------CCEEEeeeCCCCCCccccC
Q ss_pred CCCCCCCC--CCCCCCeEEEecccccceeeecCCCCCeEE
Q 005550 434 PKDNPFSE--DSGLQPEIWALGLRNPWRCSFDSDRPSYFM 471 (691)
Q Consensus 434 P~DNPF~~--~~~~~pEI~A~GlRNP~r~afDp~tg~~l~ 471 (691)
|..-..++ ..+...++.+.+=||-+-..+|+.||+.||
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
No 99
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=21.62 E-value=1.8e+02 Score=22.82 Aligned_cols=27 Identities=7% Similarity=0.235 Sum_probs=21.8
Q ss_pred eeEEEcCCCC--ceEEEEecCceEEEEEc
Q 005550 212 LNMVAHPDGS--NRAFFSNQEGKIWLATI 238 (691)
Q Consensus 212 ~~m~~~pDGs--~RlfV~eq~G~V~~~~~ 238 (691)
+.|.|+|+.. .-|+++|-.|+|-++++
T Consensus 4 R~~kFsP~~~~~DLL~~~E~~g~vhi~D~ 32 (43)
T PF10313_consen 4 RCCKFSPEPGGNDLLAWAEHQGRVHIVDT 32 (43)
T ss_pred EEEEeCCCCCcccEEEEEccCCeEEEEEc
Confidence 5789998655 56888899999999874
No 100
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=21.60 E-value=2.2e+02 Score=20.54 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=13.8
Q ss_pred eeEEEcCCCCceEEEEecC
Q 005550 212 LNMVAHPDGSNRAFFSNQE 230 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~ 230 (691)
..-+++|||..=+|++++.
T Consensus 12 ~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT
T ss_pred cCEEEecCCCEEEEEecCC
Confidence 7889999997556666666
No 101
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=20.96 E-value=1e+03 Score=25.43 Aligned_cols=201 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred eEEEcCCCCceEEEEecCc-------------eEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCCC
Q 005550 213 NMVAHPDGSNRAFFSNQEG-------------KIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNF 279 (691)
Q Consensus 213 ~m~~~pDGs~RlfV~eq~G-------------~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPdF 279 (691)
.|..-.+| ||||.+..- +|+.+++ .+++.++. ..+.+.+.. ....|-++++|..-
T Consensus 5 ~v~iD~~~--rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl---~t~~li~~------~~~p~~~~~-~~s~lndl~VD~~~ 72 (287)
T PF03022_consen 5 RVQIDECG--RLWVLDSGRPNGLQPPKQVCPPKLVAFDL---KTNQLIRR------YPFPPDIAP-PDSFLNDLVVDVRD 72 (287)
T ss_dssp EEEE-TTS--EEEEEE-CCHSSSSTTGHTS--EEEEEET---TTTCEEEE------EE--CCCS--TCGGEEEEEEECTT
T ss_pred EEEEcCCC--CEEEEeCCCcCCCCCCCCCCCcEEEEEEC---CCCcEEEE------EECChHHcc-cccccceEEEEccC
Q ss_pred CCCCEEEEEEeecCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcceeEEEEEEecCCCCCcchhccCCCCCeEEEEE
Q 005550 280 AKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFT 359 (691)
Q Consensus 280 ~~NG~~YvsYs~~~~~~~~~~g~~~~~s~~~~~p~~l~~dnG~~~~~~~~~Vse~t~~~~~~~~s~~~~~~~~~~~~Il~ 359 (691)
.+...-|+|-+..... .|.-|.+... +.++++.
T Consensus 73 ~~~~~~~aYItD~~~~----------------------------------glIV~dl~~~-------------~s~Rv~~ 105 (287)
T PF03022_consen 73 GNCDDGFAYITDSGGP----------------------------------GLIVYDLATG-------------KSWRVLH 105 (287)
T ss_dssp TTS-SEEEEEEETTTC----------------------------------EEEEEETTTT-------------EEEEEET
T ss_pred CCCcceEEEEeCCCcC----------------------------------cEEEEEccCC-------------cEEEEec
Q ss_pred ecCCCCCccccceEEcCCCCeEEEEecCCCCCCCCcCccccCCCCCeeEEEEecCCCCchhhhhhcccCCCcCCC----C
Q 005550 360 MGLSFNGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIP----K 435 (691)
Q Consensus 360 ~~~P~~~H~GG~L~FGP~DG~LYis~GDgg~~~DP~~~aQn~~sl~GKILRIdvDg~p~~~~~~~~g~~g~YsIP----~ 435 (691)
...........|-- +|..+--.+- .++.+..+-+.-|+.|=..+-. ...-|+|| .
T Consensus 106 ---~~~~~~p~~~~~~i-~g~~~~~~dg------~~gial~~~~~d~r~LYf~~ls-----------s~~ly~v~T~~L~ 164 (287)
T PF03022_consen 106 ---NSFSPDPDAGPFTI-GGESFQWPDG------IFGIALSPISPDGRWLYFHPLS-----------SRKLYRVPTSVLR 164 (287)
T ss_dssp ---CGCTTS-SSEEEEE-TTEEEEETTS------EEEEEE-TTSTTS-EEEEEETT------------SEEEEEEHHHHC
T ss_pred ---CCcceeccccceec-cCceEecCCC------ccccccCCCCCCccEEEEEeCC-----------CCcEEEEEHHHhh
Q ss_pred CCCCCCCCCCCCeEEEeccc--ccceeeecCCCCCeEEEEEccCCC-----------ceeEEEeccCCC-CCcc
Q 005550 436 DNPFSEDSGLQPEIWALGLR--NPWRCSFDSDRPSYFMCADVGQDV-----------YEEVDIITRGGN-YGWR 495 (691)
Q Consensus 436 DNPF~~~~~~~pEI~A~GlR--NP~r~afDp~tg~~l~~~DvG~d~-----------~EEIn~I~kG~N-YGWP 495 (691)
|...........++--+|-| ..-+++.|+.. .||++|+.++. .+.+.+|..-.. .-||
T Consensus 165 ~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~p 236 (287)
T PF03022_consen 165 DPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWP 236 (287)
T ss_dssp STT--HHH-HHHT-EEEEE---SECEEEEETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSE
T ss_pred CccccccccccccceeccccCCCCceEEECCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecc
No 102
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=20.43 E-value=1e+02 Score=36.62 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=30.7
Q ss_pred CCccceEEEcCCCcEEEEeCCeEEEEecCCCCcccccCCcc
Q 005550 610 LGYIYSFGEDNRKDIFILTSDGVYRVVRPSRCSYTCSKENT 650 (691)
Q Consensus 610 ~gri~sf~ed~dGeLYvlts~gIyRIv~ps~~~~~c~~~~~ 650 (691)
.++|....+|.+|++||.|++|++|.+-|.+==..|.++..
T Consensus 246 ~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~ 286 (671)
T COG3292 246 SGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMH 286 (671)
T ss_pred chheeeeecccCCCEEEeecccceeEecCCCCccccccccC
Confidence 57899999999999999999987766665554344544443
No 103
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=20.11 E-value=1.1e+03 Score=25.87 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=33.8
Q ss_pred eeEEEcCCCCceEEEEecCceEEEEEccCCCCCceeeecCCCCCcCCccceeeCCCCceeeeeeCCC
Q 005550 212 LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPN 278 (691)
Q Consensus 212 ~~m~~~pDGs~RlfV~eq~G~V~~~~~p~~gsg~~l~~d~~~pflDi~~~V~~~~e~GLLGiAfhPd 278 (691)
-..+..+||. -+|-+..+|.++++++ +.| ++- +...+--...|++||.||
T Consensus 67 ~dv~~s~dg~-~alS~swD~~lrlWDl-~~g--~~t-------------~~f~GH~~dVlsva~s~d 116 (315)
T KOG0279|consen 67 SDVVLSSDGN-FALSASWDGTLRLWDL-ATG--EST-------------RRFVGHTKDVLSVAFSTD 116 (315)
T ss_pred cceEEccCCc-eEEeccccceEEEEEe-cCC--cEE-------------EEEEecCCceEEEEecCC
Confidence 4678889995 4666667999999886 333 211 223345567899999985
No 104
>TIGR03746 conj_TIGR03746 integrating conjugative element protein, PFL_4703 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. The function is unknown.
Probab=20.10 E-value=67 Score=33.09 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=9.3
Q ss_pred cccceeeecCCC
Q 005550 455 RNPWRCSFDSDR 466 (691)
Q Consensus 455 RNP~r~afDp~t 466 (691)
|||||+++|=-+
T Consensus 183 ~NPfGLaldcy~ 194 (202)
T TIGR03746 183 RNPWGLALDCYA 194 (202)
T ss_pred cCcceeeecccC
Confidence 888899988543
Done!