Query 005550
Match_columns 691
No_of_seqs 241 out of 1675
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 18:51:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005550.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2055-2059//hhsearch_pdb/005550hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wg3_C Hedgehog-interacting pr 1.0 1 1 533.0 34.8 353 198-641 1-375 (463)
2 2g8s_A Glucose/sorbosone dehyd 1.0 1 1 434.2 37.9 341 196-637 3-352 (353)
3 1cru_A Protein (soluble quinop 1.0 1 1 425.2 37.0 356 196-634 12-431 (454)
4 3das_A Putative oxidoreductase 1.0 1 1 412.6 33.9 313 198-638 19-347 (347)
5 3a9g_A Putative uncharacterize 1.0 1 1 399.1 36.5 324 196-640 14-353 (354)
6 2ism_A Putative oxidoreductase 1.0 1 1 365.8 33.2 312 198-636 18-352 (352)
7 3m0c_C LDL receptor, low-densi 1.0 1 1 62.7 19.9 167 204-484 417-586 (791)
8 3fvz_A Peptidyl-glycine alpha- 1.0 1 1 60.2 23.0 169 212-487 27-224 (329)
9 3v65_B Low-density lipoprotein 1.0 1 1 60.0 17.6 208 200-573 105-315 (386)
10 4a0p_A LRP6, LRP-6, low-densit 1.0 1 1 58.9 20.1 28 610-638 519-548 (628)
No 1
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=1.00 E-value=1 Score=532.99 Aligned_cols=353 Identities=30% Similarity=0.578 Sum_probs=280.8
Q ss_pred CCCCEEEEEECCCE--EEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEE----CCCCCEE
Q ss_conf 99938999742825--54999689982199993075599997258998721210578887677661332----7888500
Q 005550 198 PQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHF----DTEFGLM 271 (691)
Q Consensus 198 p~Gfcle~va~Gl~--~~mv~~pDGs~RlfVaeq~G~V~~~~~p~~gsg~~l~~~~~~pfLDi~~~V~~----~~e~GLL 271 (691)
+.||++|+||+||. |+|+++|||++||||+||.|+||+++ + ++. . ..++++|+...+.. .+|+|||
T Consensus 1 ~~gf~v~~va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~-~-~g~--~----~~~~~~~~~~~~~~g~~~~~e~Gll 72 (463)
T 2wg3_C 1 HNCFCIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILT-P-EGE--I----FKEPYLDIHKLVQSGIKGGDERGLL 72 (463)
T ss_dssp -CCEEEEEEEEEESSEEEEECCSSSSCCEEEEETTTEEEEEC-T-TSC--B----CSSCSEECTTTBCCCCSSSCCCSEE
T ss_pred CCCEEEEEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEE-C-CCC--E----EEEEECCCCCEECCCCCCCCCCCCE
T ss_conf 996599981048988659998889982899994873699995-8-997--5----6026337751110476655778605
Q ss_pred EEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHCCCCC
Q ss_conf 24548897879979999940589998988987668998789888779999988763059999996499888310002899
Q 005550 272 GMAFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKP 351 (691)
Q Consensus 272 GiAfhP~F~~NG~iYvsYs~~~~~~~~~~g~~~~n~~~~~~p~~l~~~ng~~p~~~~~~I~e~~~~~~~~~~s~~~~~~~ 351 (691)
||||||+|++|++|||+|+.....+. ..+.....+|+||++..... ..+++
T Consensus 73 gia~~P~f~~n~~lYv~yt~~~~~~~------------------------~~~~~~~~~v~r~~~~~~~~-----~~~d~ 123 (463)
T 2wg3_C 73 SLAFHPNYKKNGKLYVSYTTNQERWA------------------------IGPHDHILRVVEYTVSRKNP-----HQVDL 123 (463)
T ss_dssp EEEECTTHHHHCEEEEEEEECCCSSC------------------------SSSSCEEEEEEEEEBCTTCT-----TSBCG
T ss_pred EEEECCCCCCCCEEEEEEECCCCCCC------------------------CCCCCCCEEEEEEEECCCCC-----CCCCC
T ss_conf 15868887679989999957888766------------------------67765511899999727987-----75577
Q ss_pred CCEEEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCC
Q ss_conf 97089998137888844301487588992999935999999976753468999802999925999723466430367776
Q 005550 352 SEVRRIFTMGLSFNGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSY 431 (691)
Q Consensus 352 ~~~r~Il~~~~P~~~H~GG~L~FGp~DG~LYi~~GDgg~~~DP~~~aQn~~sl~GkILRIdvDg~p~~~~~~~~g~~g~Y 431 (691)
.++++|+++..+...|+|++|+||| ||+|||++||+++..++..++|++++++|||||||+|+. +.+++|
T Consensus 124 ~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~---------~~~~~y 193 (463)
T 2wg3_C 124 RTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTD---------MCNVPY 193 (463)
T ss_dssp GGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCC---------CSSCSC
T ss_pred CCCEEEEECCCCCCCCCCCCEEECC-CCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCC---------CCCCCC
T ss_conf 7756999857888851687575899-991999969898778841124676778726999979998---------666667
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCC---C--EEEEEEC-CCC-CCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 789999998899998708972145530125628999---8--2799971-699-84117973059999964226897679
Q 005550 432 SIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRP---S--YFMCADV-GQD-VYEEVDIITRGGNYGWRLYEGPYLFT 504 (691)
Q Consensus 432 sIP~dNPF~~~~~~~pEI~A~GlRNP~r~sfDp~~g---~--~l~~~Dv-G~d-~~EEIn~I~kG~NYGWp~~eG~~~~~ 504 (691)
+||+||||++.+++++||||+|||||||++|||.++ . .+|++|+ |++ ..|||++|++|+||||+
T Consensus 194 ~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~--------- 264 (463)
T 2wg3_C 194 SIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESE--------- 264 (463)
T ss_dssp BCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEEEC----CCSC---------
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCC---------
T ss_conf 59999977688898410899888876247988887776650689840248988888867650358878999---------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEE
Q ss_conf 98899999888999888863321578658889972541005422999965678689998046604785128899998169
Q 005550 505 PLETPGGITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTT 584 (691)
Q Consensus 505 p~~~p~~~t~~~~~~~i~Pi~~y~H~~~~~~~Gs~SitGG~vYrG~~~P~l~G~yifgD~~~g~lw~~~~~p~~sG~~~~ 584 (691)
+|++.|.|+ .| .||+|++||+|.+||+|+|.||++|+. ++||.+.+++.+ +.|..
T Consensus 265 -----------------~P~~~~~~~-----~g-~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~-~~~~~ 319 (463)
T 2wg3_C 265 -----------------PSLLEFKPF-----SN-GPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSPVT-KQWQE 319 (463)
T ss_dssp -----------------CCCEECCC----------CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC------CCEE
T ss_pred -----------------CCEEEEECC-----CC-CCCCCEEEEECCCCHHHCCEEEEECCC-CCEEEEEECCCC-CEEEE
T ss_conf -----------------984885578-----99-663230898078783132608996278-829999947887-40467
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC---------CEEEEEECCCCC
Q ss_conf 996200279985101346877778888520599819984999968---------918999669988
Q 005550 585 SKIPFSCARDSPIQCKVLPGNDLPSLGYIYSFGEDNRKDIFILTS---------DGVYRVVRPSRC 641 (691)
Q Consensus 585 ~~i~f~c~~~~P~~c~~~~g~~~~~~gri~sf~ed~dGeLYvlts---------~gIYRIv~ps~~ 641 (691)
..+ +.++. ..+ ....++||++|++++||+|||+++ ++||||++|.++
T Consensus 320 ~~~---~~g~~-~~~------~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~p~~~ 375 (463)
T 2wg3_C 320 KPL---CLGTS-GSC------RGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRP 375 (463)
T ss_dssp EEE---CEEET-TSS------CSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEECTTSC
T ss_pred EEE---ECCCC-CCC------CCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCC
T ss_conf 785---23775-432------444567610799889997899764677666778717874585656
No 2
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=434.20 Aligned_cols=341 Identities=23% Similarity=0.388 Sum_probs=269.5
Q ss_pred CCCCCCEEEEEECCCE--EEEEECCCCCCE-EEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEE
Q ss_conf 9999938999742825--549996899821-9999307559999725899872121057888767766133278885002
Q 005550 196 NPPQGLCLEKIGNGSY--LNMVAHPDGSNR-AFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMG 272 (691)
Q Consensus 196 ~~p~Gfcle~va~Gl~--~~mv~~pDGs~R-lfVaeq~G~V~~~~~p~~gsg~~l~~~~~~pfLDi~~~V~~~~e~GLLG 272 (691)
+.|+||++|++++++. +.|++.||| | +||+|+.|+|++++ + ++ +. .+++.++. .|...++.|++|
T Consensus 3 ~~p~g~~~~~va~~l~~P~~i~~~pdG--~~l~V~e~~G~i~~~~-~-~g--~~-----~~~~~~~~-~v~~~g~~g~~g 70 (353)
T 2g8s_A 3 MAPATVNVEVLQDKLDHPWALAFLPDN--HGMLITLRGGELRHWQ-A-GK--GL-----SAPLSGVP-DVWAHGQGGLLD 70 (353)
T ss_dssp ---CCSEEEEEEEEESSEEEEEECSTT--CCEEEEETTTEEEEEE-T-TT--EE-----CCCCBSCC-CCCCSTTCSEEE
T ss_pred CCCCCCEEEEEECCCCCCEEEEECCCC--CEEEEEECCCEEEEEE-C-CC--CE-----EEEECCCC-CCCCCCCCCCEE
T ss_conf 788871799987999986799996899--8899994872699996-9-99--66-----65743876-412079887404
Q ss_pred EEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHCCCCCC
Q ss_conf 45488978799799999405899989889876689987898887799999887630599999964998883100028999
Q 005550 273 MAFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPS 352 (691)
Q Consensus 273 iAfhP~F~~NG~iYvsYs~~~~~~~~~~g~~~~n~~~~~~p~~l~~~ng~~p~~~~~~I~e~~~~~~~~~~s~~~~~~~~ 352 (691)
|||||+|++|+++||+|+..... | ....+|.||+.+.... ...
T Consensus 71 ia~~pdf~~~g~lYv~~~~~~~~-------------------------g----~~~~~v~r~~~~~~~~--------~~~ 113 (353)
T 2g8s_A 71 VVLAPDFAQSRRIWLSYSEVGDD-------------------------G----KAGTAVGYGRLSDDLS--------KVT 113 (353)
T ss_dssp EEECTTHHHHCEEEEEEEEECSS-------------------------S----CEEEEEEEEEECTTSS--------BEE
T ss_pred EEECCCCCCCCEEEEEEECCCCC-------------------------C----CCEEEEEEEEECCCCC--------CCC
T ss_conf 99899988799999998077889-------------------------9----7404899999789987--------777
Q ss_pred CEEEEEEECCCC---CCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCC
Q ss_conf 708999813788---88443014875889929999359999999767534689998029999259997234664303677
Q 005550 353 EVRRIFTMGLSF---NGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWG 429 (691)
Q Consensus 353 ~~r~Il~~~~P~---~~H~GG~L~FGp~DG~LYi~~GDgg~~~DP~~~aQn~~sl~GkILRIdvDg~p~~~~~~~~g~~g 429 (691)
+.++|++ .+|. ..|++++|+|+| ||+|||++||.++. + .+|+++++.|||+||++|+
T Consensus 114 ~~~~i~~-~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~--~--~~q~~~~~~g~I~ri~~dG-------------- 173 (353)
T 2g8s_A 114 DFRTVFR-QMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQR--P--TAQDLDKLQGKLVRLTDQG-------------- 173 (353)
T ss_dssp EEEEEEE-CSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCG--G--GGGCTTSCTTEEEEEETTS--------------
T ss_pred CEEEEEE-ECCCCCCCCCCCCCEEECC-CCCEEEEECCCCCC--C--CCCCCCCCCEEEEEECCCC--------------
T ss_conf 6079999-7788887862576277899-99699997999999--7--6678887775799988899--------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76789999998899998708972145530125628999827999716998411797305999996422689767998899
Q 005550 430 SYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEGPYLFTPLETP 509 (691)
Q Consensus 430 ~YsIP~dNPF~~~~~~~pEI~A~GlRNP~r~sfDp~~g~~l~~~DvG~d~~EEIn~I~kG~NYGWp~~eG~~~~~p~~~p 509 (691)
+||.||||++..+.++||||+|+|||||++||+.++ +||++|+|++.+||||+|++|+|||||.+++...|+....+
T Consensus 174 --~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g-~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 174 --EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSN-ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp --CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTT-EEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred --CCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCC-CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf --988899876888997308998176745269878999-89999228998718917436876899876178777887357
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEE
Q ss_conf 99988899988886332157865888997254100542299996567868999804660478512889999816999620
Q 005550 510 GGITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPF 589 (691)
Q Consensus 510 ~~~t~~~~~~~i~Pi~~y~H~~~~~~~Gs~SitGG~vYrG~~~P~l~G~yifgD~~~g~lw~~~~~p~~sG~~~~~~i~f 589 (691)
... .......+.|++.|.|. .|++|++||+|.+||+++|.+|++|+..++||.+..+ .+..... ..
T Consensus 251 ~~~-~~~~~~~~~P~~~~~~~--------~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~---~~~~~~~-~~- 316 (353)
T 2g8s_A 251 EAK-GEIVAGTEQPVFYWKDS--------PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVN---GDKVTED-GR- 316 (353)
T ss_dssp TCC-BSSCTTSCCCSEEESSC--------CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEE---TTEEEEE-EE-
T ss_pred CCC-CCCCCCCCCCEEEECCC--------CCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEC---CCEEEEE-EE-
T ss_conf 666-77787764885982787--------5762138877866803188499999569989999968---9907635-77-
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC---CEEEEEEC
Q ss_conf 0279985101346877778888520599819984999968---91899966
Q 005550 590 SCARDSPIQCKVLPGNDLPSLGYIYSFGEDNRKDIFILTS---DGVYRVVR 637 (691)
Q Consensus 590 ~c~~~~P~~c~~~~g~~~~~~gri~sf~ed~dGeLYvlts---~gIYRIv~ 637 (691)
++. ...+||+++++++||+|||+++ ++||||++
T Consensus 317 -----------~~~----~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~~ 352 (353)
T 2g8s_A 317 -----------ILT----DRGQRIRDVRTGPDGYLYVLTDESSGELLKVSP 352 (353)
T ss_dssp -----------ESG----GGCCCEEEEEECTTSCEEEEECSTTEEEEEEEC
T ss_pred -----------CCC----CCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf -----------323----789964689999998399998089998999958
No 3
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=1.00 E-value=1 Score=425.24 Aligned_cols=356 Identities=23% Similarity=0.389 Sum_probs=257.2
Q ss_pred CCCCCCEEEEEECCCE--EEEEECCCCCCEEEEEECCC-EEEEEECCCCCCCCEEEECCCCCCCCCCCCEE-ECCCCCEE
Q ss_conf 9999938999742825--54999689982199993075-59999725899872121057888767766133-27888500
Q 005550 196 NPPQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQEG-KIWLATIPEQGLGETMELDASSPFADLTDEVH-FDTEFGLM 271 (691)
Q Consensus 196 ~~p~Gfcle~va~Gl~--~~mv~~pDGs~RlfVaeq~G-~V~~~~~p~~gsg~~l~~~~~~pfLDi~~~V~-~~~e~GLL 271 (691)
+.|++|.+|+|+++|. |+|++.||| |+||+|+.| +|++++ +++|. . ++++++...+. ..+|+|||
T Consensus 12 ~~~~gf~~~~~a~~l~~P~~~a~~pdG--~l~V~e~~gg~I~~~~-~~~g~--~------~~~~~~~~~~~~~~g~~Gll 80 (454)
T 1cru_A 12 AKSENFDKKVILSNLNKPHALLWGPDN--QIWLTERATGKILRVN-PESGS--V------KTVFQVPEIVNDADGQNGLL 80 (454)
T ss_dssp CCCTTSCEEEEECCCSSEEEEEECTTS--CEEEEETTTCEEEEEC-TTTCC--E------EEEEECTTCCCCTTSSCSEE
T ss_pred CCCCCEEEEEEECCCCCCEEEEECCCC--CEEEEECCCCEEEEEE-CCCCC--E------EEEECCCCCCCCCCCCCCEE
T ss_conf 788980799977899985599991999--4999972799799998-99996--8------67764774010567888604
Q ss_pred EEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHCCCCC
Q ss_conf 24548897879979999940589998988987668998789888779999988763059999996499888310002899
Q 005550 272 GMAFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKP 351 (691)
Q Consensus 272 GiAfhP~F~~NG~iYvsYs~~~~~~~~~~g~~~~n~~~~~~p~~l~~~ng~~p~~~~~~I~e~~~~~~~~~~s~~~~~~~ 351 (691)
||||||+|++|++|||+|+........ . ......+|+||+.+.... +.
T Consensus 81 gia~~Pdf~~~g~lYv~~s~~~~~~~~----------------------~--~~~~~~~v~r~~~~~~~~--------~~ 128 (454)
T 1cru_A 81 GFAFHPDFKNNPYIYISGTFKNPKSTD----------------------K--ELPNQTIIRRYTYNKSTD--------TL 128 (454)
T ss_dssp EEEECTTTTTSCEEEEEEEEECTTC------------------------C--CSCEEEEEEEEEEETTTT--------EE
T ss_pred EEEECCCCCCCCEEEEEEECCCCCCCC----------------------C--CCCCCCEEEEEEECCCCC--------CC
T ss_conf 799888767599899998036667776----------------------6--665641899999889877--------76
Q ss_pred CCEEEEEEECCCC-CCCCCCCEEECCCCCEEEEEECCCCCCC-----CCC----------CCCCCCCCCCEEEEEEECCC
Q ss_conf 9708999813788-8844301487588992999935999999-----976----------75346899980299992599
Q 005550 352 SEVRRIFTMGLSF-NGHHGGQLLFGPTDGYMYFMMGDGGGTA-----DPY----------NFSQNKKSLLGKITRLDVDN 415 (691)
Q Consensus 352 ~~~r~Il~~~~P~-~~H~GG~L~FGp~DG~LYi~~GDgg~~~-----DP~----------~~aQn~~sl~GkILRIdvDg 415 (691)
.+.++|++ ++|. ..|++++|+|+| ||+|||++||+++.. +|. ..+|++.+++|||+||++||
T Consensus 129 ~~~~~i~~-~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG 206 (454)
T 1cru_A 129 EKPVDLLA-GLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDG 206 (454)
T ss_dssp EEEEEEEE-EECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTS
T ss_pred CCCEEEEE-CCCCCCCCCCCEEEECC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 77189998-27889987887086999-89399997988887755555653223455422223568888884699990899
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCCCCC
Q ss_conf 97234664303677767899999988999987089721455301256289998279997169984117973059999964
Q 005550 416 IPSAAEIEKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWR 495 (691)
Q Consensus 416 ~p~~~~~~~~g~~g~YsIP~dNPF~~~~~~~pEI~A~GlRNP~r~sfDp~~g~~l~~~DvG~d~~EEIn~I~kG~NYGWp 495 (691)
+||+||||++ ++++||||+|+|||+|++||+ ++ .||++|+|++..||||+|++|+|||||
T Consensus 207 ----------------~ip~~Npf~~--~~~~ei~a~G~RNp~gla~dp-~G-~L~~~d~g~~~~dein~i~~G~nYGWP 266 (454)
T 1cru_A 207 ----------------SIPKDNPSFN--GVVSHIYTLGHRNPQGLAFTP-NG-KLLQSEQGPNSDDEINLIVKGGNYGWP 266 (454)
T ss_dssp ----------------CCCTTCCEET--TEECSEEEBCCSEEEEEEECT-TS-CEEEEEECSSSCEEEEECCTTCBCCTT
T ss_pred ----------------CCCCCCCCCC--CCCCEEEEECCCCCCEEEECC-CC-CEEEEECCCCCCEEEEEECCCCCCCCC
T ss_conf ----------------8788887778--885419998898753389889-99-989871389998389884578879998
Q ss_pred CCCCCCC---------------------CCCCCCCCCCCC-----CCCCCCCCCEEECC-------CCCCC------CCC
Q ss_conf 2268976---------------------799889999988-----89998888633215-------78658------889
Q 005550 496 LYEGPYL---------------------FTPLETPGGITP-----LNSVSPIFPVLGYN-------HSEVN------KKE 536 (691)
Q Consensus 496 ~~eG~~~---------------------~~p~~~p~~~t~-----~~~~~~i~Pi~~y~-------H~~~~------~~~ 536 (691)
.++|... |++...+.+.+. ......+.|++.|. |.+.. ...
T Consensus 267 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~p~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~G~~~~~~~ 346 (454)
T 1cru_A 267 NVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDTYNYNDPTCGEMTYICW 346 (454)
T ss_dssp TCSSSSSCSSCCEECGGGSSCTTCCCCCSTTSSCCTTCCEECGGGCCCSSBCCCSEEECCCCTTCCSCCGGGTTCGGGGS
T ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56667666764210233444544445455775467666543333234777679835001355543236655665221236
Q ss_pred CCCCCCCEEEECCC--CCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97254100542299--9965678689998046604785128899998169996200279985101346877778888520
Q 005550 537 GSASITGGYFYRSM--TDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCARDSPIQCKVLPGNDLPSLGYIY 614 (691)
Q Consensus 537 Gs~SitGG~vYrG~--~~P~l~G~yifgD~~~g~lw~~~~~p~~sG~~~~~~i~f~c~~~~P~~c~~~~g~~~~~~gri~ 614 (691)
++.|++|+.||+|. .+|+++|.+|++++..++|+.+..+.++. .++.....| +. .++||+
T Consensus 347 ~~~ap~G~~fy~g~~~~~~~~~g~lfv~~~~~~~i~~v~l~~~g~-~~~~~~~~~------------~~-----~~~R~~ 408 (454)
T 1cru_A 347 PTVAPSSAYVYKGGKKAITGWENTLLVPSLKRGVIFRIKLDPTYS-TTYDDAVPM------------FK-----SNNRYR 408 (454)
T ss_dssp SCCCBCCCEECCCCTTCCTTCTTEEEEEBSSSCCEEEEEECTTSS-SEEEEEEEE------------SC-----CSSCEE
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCC-EEEEEEEEE------------CC-----CCCCCE
T ss_conf 752763237868987668123883787526789799999889997-035656640------------14-----689704
Q ss_pred EEEECCCCC-EEEEECC--EEEE
Q ss_conf 599819984-9999689--1899
Q 005550 615 SFGEDNRKD-IFILTSD--GVYR 634 (691)
Q Consensus 615 sf~ed~dGe-LYvlts~--gIYR 634 (691)
++.+++||. |||++++ .|||
T Consensus 409 dv~~gpDG~~Lyv~~d~~G~i~~ 431 (454)
T 1cru_A 409 DVIASPDGNVLYVLTDTAGNVQK 431 (454)
T ss_dssp EEEECTTSSCEEEEECSSCCEEC
T ss_pred EEEECCCCCEEEEEECCCCCCCC
T ss_conf 67999999989999879997716
No 4
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=1.00 E-value=1 Score=412.62 Aligned_cols=313 Identities=24% Similarity=0.405 Sum_probs=244.0
Q ss_pred CCCCEEEEEECCCE--EEEEECCCCCCEEEEEEC-CCEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEE
Q ss_conf 99938999742825--549996899821999930-755999972589987212105788876776613327888500245
Q 005550 198 PQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMA 274 (691)
Q Consensus 198 p~Gfcle~va~Gl~--~~mv~~pDGs~RlfVaeq-~G~V~~~~~p~~gsg~~l~~~~~~pfLDi~~~V~~~~e~GLLGiA 274 (691)
.....+|+|++||. |.|++.||| ++||+|+ .|+|++++ ++.+. . +++..+ +.|...++.||+|||
T Consensus 19 ~~~~~~~~va~gL~~P~~ia~~pdG--~llVter~~G~I~~v~-~~~g~--~------~~v~~~-~~v~~~g~~GllGia 86 (347)
T 3das_A 19 GSVKVLRTVATGLNSPWGLAPLPGG--DLLVSSRDEATITRVD-AKTGR--K------TELGEV-PGVSPSGEGGLLGIA 86 (347)
T ss_dssp CCEEEEEEEECCCSSEEEEEECTTS--CEEEEETTTCEEEEEC-TTTCC--E------EEEEEC-TTCCCBTTBSEEEEE
T ss_pred CCCCEEEEEECCCCCCEEEEECCCC--CEEEEEECCCEEEEEE-CCCCC--E------EEECCC-CCEEECCCCCCEEEE
T ss_conf 8876469965699981499996999--5999990699899997-89995--8------665056-746535888732467
Q ss_pred ECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHCCCCCCCE
Q ss_conf 48897879979999940589998988987668998789888779999988763059999996499888310002899970
Q 005550 275 FHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEV 354 (691)
Q Consensus 275 fhP~F~~NG~iYvsYs~~~~~~~~~~g~~~~n~~~~~~p~~l~~~ng~~p~~~~~~I~e~~~~~~~~~~s~~~~~~~~~~ 354 (691)
|||+|++|++|||+|+... ..+|.||+..+... ......+.
T Consensus 87 ~~Pdf~~~g~lYv~yt~~~----------------------------------~~~v~R~~~~~~~~-----~~~~~~~~ 127 (347)
T 3das_A 87 LSPDYASDHMVYAYFTSAS----------------------------------DNRIVRMLYDEKKP-----SGEQLGAP 127 (347)
T ss_dssp ECTTHHHHCEEEEEEECSS----------------------------------SEEEEEEEBCTTSC-----TTCCBCCC
T ss_pred ECCCCCCCCEEEEEEECCC----------------------------------CCEEEEEEECCCCC-----CCCCCCCC
T ss_conf 4466565987999980389----------------------------------99799999478875-----54557875
Q ss_pred EEEEEECCCC-CCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCCCC
Q ss_conf 8999813788-884430148758899299993599999997675346899980299992599972346643036777678
Q 005550 355 RRIFTMGLSF-NGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSI 433 (691)
Q Consensus 355 r~Il~~~~P~-~~H~GG~L~FGp~DG~LYi~~GDgg~~~DP~~~aQn~~sl~GkILRIdvDg~p~~~~~~~~g~~g~YsI 433 (691)
++|++ ++|. ..|++++|+|+| ||+|||++||.++. ..+|+++++.|||+||++|+ +|
T Consensus 128 ~~i~~-~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~----~~~qd~~~~~G~IlRi~~dG----------------~i 185 (347)
T 3das_A 128 DTVFR-GIPKGVIHNGGRIAFGP-DKMLYAGTGESGDT----GLSQDRKSLGGKILRMTPDG----------------EP 185 (347)
T ss_dssp EEEEE-EECCCSSCCCCCEEECT-TSCEEEECBCTTCG----GGTTCTTCSTTCEEEECTTS----------------SB
T ss_pred EEEEE-CCCCCCCCCCCCCCCCC-CCCEEEEECCCCCC----CCCCCCCCCCCEEEEEECCC----------------CC
T ss_conf 79998-37999986675402999-99799997988877----64458777787799992899----------------84
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999988999987089721455301256289998279997169984117973059999964226897679988999998
Q 005550 434 PKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEGPYLFTPLETPGGIT 513 (691)
Q Consensus 434 P~dNPF~~~~~~~pEI~A~GlRNP~r~sfDp~~g~~l~~~DvG~d~~EEIn~I~kG~NYGWp~~eG~~~~~p~~~p~~~t 513 (691)
|+||||.+ .||||+|||||+|++||| ++ .||++|+|++..||||+|++|+|||||.++|...
T Consensus 186 p~~nPf~~-----~~i~a~G~RNp~Gla~dp-~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~----------- 247 (347)
T 3das_A 186 APGNPFPG-----SPVYSYGHRNVQGLAWDD-KQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGG----------- 247 (347)
T ss_dssp CTTCSSTT-----CCEEEBCCSBCCEEEECT-TC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCC-----------
T ss_pred CCCCCCCC-----CEEEEECCCCCCEEEECC-CC-CEEEEECCCCCCCEEEEECCCCEECCCCCCCCCC-----------
T ss_conf 67888877-----749853788863289899-99-9999826899986646871798814874048887-----------
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEEECCC
Q ss_conf 88999888863321578658889972541005422999965678689998046604785128899998169996200279
Q 005550 514 PLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSCAR 593 (691)
Q Consensus 514 ~~~~~~~i~Pi~~y~H~~~~~~~Gs~SitGG~vYrG~~~P~l~G~yifgD~~~g~lw~~~~~p~~sG~~~~~~i~f~c~~ 593 (691)
. ...+.|++.|.++ +.|++|+.||.| ..|++++..++||.+..+.. + .. +
T Consensus 248 -~--~~~~~P~~~~~~~-------~~ap~G~~~~~g--------~~~~~~l~~~~l~~v~~~~~--~-~~---------~ 297 (347)
T 3das_A 248 -G--SGFHDPVAQWSTD-------EASPSGIAYAEG--------SVWMAGLRGERLWRIPLKGT--A-AA---------A 297 (347)
T ss_dssp -C--TTCCCCSEEECTT-------TCCEEEEEEETT--------EEEEEESTTCSEEEEEEETT--E-ES---------S
T ss_pred -C--CCCCCCCEECCCC-------CCCCCCEEEECC--------CEEECCCCCCEEEEEEECCC--C-EE---------C
T ss_conf -7--6655872713787-------778851699848--------55631036898999994699--2-10---------2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECC------------EEEEEECC
Q ss_conf 9851013468777788885205998199849999689------------18999669
Q 005550 594 DSPIQCKVLPGNDLPSLGYIYSFGEDNRKDIFILTSD------------GVYRVVRP 638 (691)
Q Consensus 594 ~~P~~c~~~~g~~~~~~gri~sf~ed~dGeLYvlts~------------gIYRIv~p 638 (691)
. ...++.+ .++||+++.+++||.|||++++ +|+||+.+
T Consensus 298 -~--~e~~l~~----~~gR~~dv~~~pDG~lyv~td~~~g~g~p~~~ddri~r~~~~ 347 (347)
T 3das_A 298 -D--PQAFLEG----EYGRLRTVAPAGGDKLWLVTSNTDGRGDAKGGDDRILELEVE 347 (347)
T ss_dssp -C--CEEESTT----TSSCEEEEEEEETTEEEEEECTTSSSSCCCTTCSCEEEEEEC
T ss_pred -C--EEEEECC----CCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECC
T ss_conf -3--3783138----988840799989986899973788877888899989999589
No 5
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=1.00 E-value=1 Score=399.10 Aligned_cols=324 Identities=26% Similarity=0.419 Sum_probs=256.4
Q ss_pred CCCCCCEEEEEECCCE--EEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEE
Q ss_conf 9999938999742825--54999689982199993075599997258998721210578887677661332788850024
Q 005550 196 NPPQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGM 273 (691)
Q Consensus 196 ~~p~Gfcle~va~Gl~--~~mv~~pDGs~RlfVaeq~G~V~~~~~p~~gsg~~l~~~~~~pfLDi~~~V~~~~e~GLLGi 273 (691)
+.+.+|++|+|++++. +.|++.||| |+||+|+.|+|++++ + +|. + ++.++. |...++.|++||
T Consensus 14 ~~~~~~~~~~va~~l~~P~~ia~~pdG--~l~V~e~~g~I~~~d-~-~G~-~--------~~~~~~--v~~~g~~g~~gi 78 (354)
T 3a9g_A 14 SEEWKFKISEVASDLEVPWSIAPLGGG--RYLVTERPGRLVLIS-P-SGK-K--------LVASFD--VANVGEAGLLGL 78 (354)
T ss_dssp --CCCEEEEEEECSCSCEEEEEEEETT--EEEEEETTTEEEEEC-S-SCE-E--------EEEECC--CCCSTTCSEEEE
T ss_pred CCCCCEEEEEEECCCCCCEEEEECCCC--EEEEEECCCEEEEEE-C-CCC-E--------EEECCC--EEECCCCCEEEE
T ss_conf 777872899972799987698993998--199995799799995-9-996-5--------854241--242698850668
Q ss_pred EECCCCCCCCEEEEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHCCCCCC
Q ss_conf 548897879979999940-5899989889876689987898887799999887630599999964998883100028999
Q 005550 274 AFHPNFAKNGRFFASFNC-DKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPS 352 (691)
Q Consensus 274 AfhP~F~~NG~iYvsYs~-~~~~~~~~~g~~~~n~~~~~~p~~l~~~ng~~p~~~~~~I~e~~~~~~~~~~s~~~~~~~~ 352 (691)
||||+|++||++||+|+. .... ....+|.||+..+.. ....
T Consensus 79 a~~pdf~~~g~lyv~~~~~~~~~------------------------------~~~~~v~r~~~~~~~--------~~~~ 120 (354)
T 3a9g_A 79 ALHPEFPKKSWVYLYASYFAEGG------------------------------HIRNRVIRGRLDGST--------FKLK 120 (354)
T ss_dssp EECTTTTTSCEEEEEEEEECGGG------------------------------CEEEEEEEEEECSSS--------CCEE
T ss_pred EECCCCCCCCEEEEEEECCCCCC------------------------------CCCEEEEEEEECCCC--------CCCC
T ss_conf 86799776999999982467899------------------------------761089999989998--------6767
Q ss_pred CEEEEEEECCCC-CCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCC
Q ss_conf 708999813788-8844301487588992999935999999976753468999802999925999723466430367776
Q 005550 353 EVRRIFTMGLSF-NGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSY 431 (691)
Q Consensus 353 ~~r~Il~~~~P~-~~H~GG~L~FGp~DG~LYi~~GDgg~~~DP~~~aQn~~sl~GkILRIdvDg~p~~~~~~~~g~~g~Y 431 (691)
+.++|++ ++|. ..|+++.|+|+| ||+|||++||.++. ..+|++.++.|||+||++|+
T Consensus 121 ~~~~l~~-~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~----~~~~d~~~~~G~I~ri~~dG---------------- 178 (354)
T 3a9g_A 121 EVKTLID-GIPGAYIHNGGRIRFGP-DGMLYITTGDAADP----RLAQDLSSLAGKILRVDEEG---------------- 178 (354)
T ss_dssp EEEEEEE-EEECCSSCCCCCEEECT-TSCEEEECCCTTCG----GGGTCTTCCSSEEEEECTTS----------------
T ss_pred CCEEEEE-CCCCCCCCCCCEEEECC-CCCEEEEECCCCCC----CCCCCCCCCCEEEEEECCCC----------------
T ss_conf 6179997-58988983786377999-99699998989887----64569887782899985899----------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78999999889999870897214553012562899982799971699841179730599999642268976799889999
Q 005550 432 SIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEGPYLFTPLETPGG 511 (691)
Q Consensus 432 sIP~dNPF~~~~~~~pEI~A~GlRNP~r~sfDp~~g~~l~~~DvG~d~~EEIn~I~kG~NYGWp~~eG~~~~~p~~~p~~ 511 (691)
+||.||||. .+||||+|+|||+|++||+.++ .||++|+|++..||||+|++|+|||||.++|....
T Consensus 179 ~~p~~npf~-----~~~i~a~G~rnp~Gla~d~~~g-~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~-------- 244 (354)
T 3a9g_A 179 RPPADNPFP-----NSPIWSYGHRNPQGIDWHRASG-VMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR-------- 244 (354)
T ss_dssp CCCTTSSST-----TCCEEEECCSCCCEEEECTTTC-CEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC--------
T ss_pred CCCCCCCCC-----CCCEEEECCCCCCEEEEECCCC-CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC--------
T ss_conf 877889888-----8758998267761489827999-99999558998738989647876899741488788--------
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEEEC
Q ss_conf 98889998888633215786588899725410054229999656786899980466047851288999981699962002
Q 005550 512 ITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTSKIPFSC 591 (691)
Q Consensus 512 ~t~~~~~~~i~Pi~~y~H~~~~~~~Gs~SitGG~vYrG~~~P~l~G~yifgD~~~g~lw~~~~~p~~sG~~~~~~i~f~c 591 (691)
...+.|++.|++ .+.+++|+.||+|.+||.++|.+|++++..++||.+..+.. |..... ..
T Consensus 245 ------~~~~~p~~~~~~-------~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~--g~~~~~-~~--- 305 (354)
T 3a9g_A 245 ------GEFVDPVIDTGS-------ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN--MEVRKI-ST--- 305 (354)
T ss_dssp ------TTSCCCSEECTT-------CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG--GCEEEE-EE---
T ss_pred ------CCCCCCEEECCC-------CCCCCCCEEEECCCCCCCCCCCEEEEECCCCEEEEEEECCC--CCCCCE-EE---
T ss_conf ------777598760379-------98687642997998883439829999858999999998899--941132-46---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC---C---------EEEEEECCCC
Q ss_conf 79985101346877778888520599819984999968---9---------1899966998
Q 005550 592 ARDSPIQCKVLPGNDLPSLGYIYSFGEDNRKDIFILTS---D---------GVYRVVRPSR 640 (691)
Q Consensus 592 ~~~~P~~c~~~~g~~~~~~gri~sf~ed~dGeLYvlts---~---------gIYRIv~ps~ 640 (691)
++.+ .++||+++++++||+|||+++ + +||||.+...
T Consensus 306 ---------~~~~----~~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~~g~ 353 (354)
T 3a9g_A 306 ---------FFKN----VFGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVSEQH 353 (354)
T ss_dssp ---------ECTT----TSCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEETTC
T ss_pred ---------ECCC----CCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCC
T ss_conf ---------1238----89972689998998599998479887677778998999951898
No 6
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=365.79 Aligned_cols=312 Identities=27% Similarity=0.427 Sum_probs=246.2
Q ss_pred CCCCEEEEEECCCE--EEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEEE
Q ss_conf 99938999742825--5499968998219999307559999725899872121057888767766133278885002454
Q 005550 198 PQGLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQEGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAF 275 (691)
Q Consensus 198 p~Gfcle~va~Gl~--~~mv~~pDGs~RlfVaeq~G~V~~~~~p~~gsg~~l~~~~~~pfLDi~~~V~~~~e~GLLGiAf 275 (691)
...+.+|++++++. +.|++.||| |+||+|+.|+|++++ ++.. +++.++. |...++.|++||||
T Consensus 18 ~~~~~~~~va~~l~~P~~ia~~pdG--~l~V~e~~g~I~~i~---~g~~--------~~~~~~~--v~~~g~~~p~gia~ 82 (352)
T 2ism_A 18 GQGLRVEEVVGGLEVPWALAFLPDG--GMLIAERPGRIRLFR---EGRL--------STYAELS--VYHRGESGLLGLAL 82 (352)
T ss_dssp --CCCEEEEECCCSCEEEEEECTTS--CEEEEETTTEEEEEE---TTEE--------EEEEECC--CCCSTTCSEEEEEE
T ss_pred CCCCEEEEEECCCCCCEEEEECCCC--EEEEEECCCEEEEEE---CCCC--------CEEECCE--EEECCCCCCEEEEE
T ss_conf 6774799977799986699993999--599995788599998---9980--------0763314--76468898363798
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHCCCCCCCEE
Q ss_conf 88978799799999405899989889876689987898887799999887630599999964998883100028999708
Q 005550 276 HPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVR 355 (691)
Q Consensus 276 hP~F~~NG~iYvsYs~~~~~~~~~~g~~~~n~~~~~~p~~l~~~ng~~p~~~~~~I~e~~~~~~~~~~s~~~~~~~~~~r 355 (691)
||+|++|+++||+++.... ....+|.||+..+. ...+.+
T Consensus 83 ~pdf~~~g~lYv~~~~~~~-------------------------------~~~~~v~r~~~~~~----------~~~~~~ 121 (352)
T 2ism_A 83 HPRFPQEPYVYAYRTVAEG-------------------------------GLRNQVVRLRHLGE----------RGVLDR 121 (352)
T ss_dssp CTTTTTSCEEEEEEEECTT-------------------------------SSEEEEEEEEECSS----------CEEEEE
T ss_pred CCCCCCCCEEEEEEECCCC-------------------------------CCCCEEEEEEECCC----------CCCCEE
T ss_conf 7897778889999964788-------------------------------87338999995899----------848617
Q ss_pred EEEEECCC---CCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCCC
Q ss_conf 99981378---888443014875889929999359999999767534689998029999259997234664303677767
Q 005550 356 RIFTMGLS---FNGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYS 432 (691)
Q Consensus 356 ~Il~~~~P---~~~H~GG~L~FGp~DG~LYi~~GDgg~~~DP~~~aQn~~sl~GkILRIdvDg~p~~~~~~~~g~~g~Ys 432 (691)
+|++ ++| ...|+++.|+|+| ||+|||++||.+.. ..+|+..++.|||+||++|+ +
T Consensus 122 ~l~~-~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~----~~~~d~~~~~g~I~ri~~dG----------------~ 179 (352)
T 2ism_A 122 VVLD-GIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYER----ELAQDLASLGGKILRLTPEG----------------E 179 (352)
T ss_dssp EEEE-EECCCTTCCCCCCCEEECT-TSCEEEECCCTTCG----GGGGCTTCSSSEEEEECTTS----------------S
T ss_pred EEEE-ECCCCCCCCCCCCEEEECC-CCCEEEEECCCCCC----CCCCCCCCCCEEEEEECCCC----------------C
T ss_conf 9999-1787888873775478999-99799997989887----64568888863799990799----------------8
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCC-----CEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999998899998708972145530125628999827999716998-----4117973059999964226897679988
Q 005550 433 IPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDV-----YEEVDIITRGGNYGWRLYEGPYLFTPLE 507 (691)
Q Consensus 433 IP~dNPF~~~~~~~pEI~A~GlRNP~r~sfDp~~g~~l~~~DvG~d~-----~EEIn~I~kG~NYGWp~~eG~~~~~p~~ 507 (691)
||.+|||++..+.++||||+|+|||++++||+.++ .||++|+|++. +|||++|.+|+|||||.++|....
T Consensus 180 ~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g-~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~---- 254 (352)
T 2ism_A 180 PAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTG-ELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGND---- 254 (352)
T ss_dssp BCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTC-CEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCC----
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCC-CEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC----
T ss_conf 88888655778887509998577762179878999-8999975998888999748999605875899861378888----
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEE-E
Q ss_conf 999998889998888633215786588899725410054229999656786899980466047851288999981699-9
Q 005550 508 TPGGITPLNSVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAASESPENSGNFTTS-K 586 (691)
Q Consensus 508 ~p~~~t~~~~~~~i~Pi~~y~H~~~~~~~Gs~SitGG~vYrG~~~P~l~G~yifgD~~~g~lw~~~~~p~~sG~~~~~-~ 586 (691)
..++.|++.|.+ +.+++|+.||+ |.++++++..++|+.+..+..+ ..|+.. .
T Consensus 255 ----------~~~~~p~~~~~~--------~~ap~G~~~~~--------G~l~v~~~~~~~v~~v~~~~~~-~~~~~~~~ 307 (352)
T 2ism_A 255 ----------PRYRDPLYFWPQ--------GFPPGNLAFFR--------GDLYVAGLRGQALLRLVLEGER-GRWRVLRV 307 (352)
T ss_dssp ----------TTSCCCSEECTT--------CCCEEEEEEET--------TEEEEEETTTTEEEEEEEEEET-TEEEEEEE
T ss_pred ----------CCCCCCEEECCC--------CCCCCCEEEEC--------CEEEEEECCCCEEEEEEECCCC-CCEEECCH
T ss_conf ----------777598383689--------97886649999--------9899998889999999987998-51100253
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC---C---------EEEEEE
Q ss_conf 6200279985101346877778888520599819984999968---9---------189996
Q 005550 587 IPFSCARDSPIQCKVLPGNDLPSLGYIYSFGEDNRKDIFILTS---D---------GVYRVV 636 (691)
Q Consensus 587 i~f~c~~~~P~~c~~~~g~~~~~~gri~sf~ed~dGeLYvlts---~---------gIYRIv 636 (691)
.. ++ ..++||+++++++||+|||+++ + +||||+
T Consensus 308 ~~------------~~-----~~~~rp~~v~~~pdG~lyv~~~~~~g~g~~~~~~~~i~ri~ 352 (352)
T 2ism_A 308 ET------------AL-----SGFGRLREVQVGPDGALYVTTSNRDGRGQVRPGDDRVLRLL 352 (352)
T ss_dssp EE------------EE-----ESSCCEEEEEECTTSCEEEEECSTTTTSCCCTTCSCEEEEC
T ss_pred HE------------EC-----CCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 00------------01-----46897137999899819999848998788788898799969
No 7
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=1.00 E-value=1 Score=62.73 Aligned_cols=167 Identities=14% Similarity=0.150 Sum_probs=100.3
Q ss_pred EEEECCCE--EEEEECCCCCCEEEEEEC-CCEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf 99742825--549996899821999930-755999972589987212105788876776613327888500245488978
Q 005550 204 EKIGNGSY--LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFHPNFA 280 (691)
Q Consensus 204 e~va~Gl~--~~mv~~pDGs~RlfVaeq-~G~V~~~~~p~~gsg~~l~~~~~~pfLDi~~~V~~~~e~GLLGiAfhP~F~ 280 (691)
+.++.++. .+|++.+.. ++||+++. .++|+.+.+. +.... . .. ..+...+.....|||+++
T Consensus 417 ~~l~~~~~~~~gl~~d~~~-~~lY~sD~~~~~I~~~~l~--g~~~~-----~----~~-~~vi~~~l~~P~GLAvD~--- 480 (791)
T 3m0c_C 417 TSLIPNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLD--RAHGV-----S----SY-DTVISRDIQAPDGLAVDW--- 480 (791)
T ss_dssp EEEECSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC-------------------C-EEEECSSCSCCCEEEEET---
T ss_pred EEEECCCCCEEEEEECCCC-CEEEEEECCCEEEEEEECC--CCCCC-----C----CE-EEEEECCCCCCCEEEEEE---
T ss_conf 1340588736888401567-7369951355047887226--77777-----6----41-698736889864054212---
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHCCCCCCCEEEEEEE
Q ss_conf 79979999940589998988987668998789888779999988763059999996499888310002899970899981
Q 005550 281 KNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRRIFTM 360 (691)
Q Consensus 281 ~NG~iYvsYs~~~~~~~~~~g~~~~n~~~~~~p~~l~~~ng~~p~~~~~~I~e~~~~~~~~~~s~~~~~~~~~~r~Il~~ 360 (691)
..+.||++-+.. .+|.++..++. ..++++..
T Consensus 481 ~~~~LY~tD~~~------------------------------------~~I~v~~ldG~-------------~~~~l~~~ 511 (791)
T 3m0c_C 481 IHSNIYWTDSVL------------------------------------GTVSVADTKGV-------------KRKTLFRE 511 (791)
T ss_dssp TTTEEEEEETTT------------------------------------TEEEEEETTSS-------------SEEEEEEC
T ss_pred CCCCEEEEECCC------------------------------------CEEEEEECCCC-------------EEEEEEEC
T ss_conf 378579974689------------------------------------74999957998-------------38999868
Q ss_pred CCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 37888844301487588992999935999999976753468999802999925999723466430367776789999998
Q 005550 361 GLSFNGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKDNPFS 440 (691)
Q Consensus 361 ~~P~~~H~GG~L~FGp~DG~LYi~~GDgg~~~DP~~~aQn~~sl~GkILRIdvDg~p~~~~~~~~g~~g~YsIP~dNPF~ 440 (691)
. ...-..|+++|..|+|||+--. ..++|.|++.||.
T Consensus 512 ~----l~~P~gIaVDp~~g~LYwtD~g----------------~~~~I~~~~~dG~------------------------ 547 (791)
T 3m0c_C 512 N----GSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGV------------------------ 547 (791)
T ss_dssp T----TCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSC------------------------
T ss_pred C----CCCCCEEEEECCCCCEEEECCC----------------CCCEEEEEECCCC------------------------
T ss_conf 8----8986428993588977984678----------------8875899956998------------------------
Q ss_pred CCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEE
Q ss_conf 89999870897214553012562899982799971699841179
Q 005550 441 EDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVD 484 (691)
Q Consensus 441 ~~~~~~pEI~A~GlRNP~r~sfDp~~g~~l~~~DvG~d~~EEIn 484 (691)
.+..+...++..|.++++|+..+ +||++|.+.+..+.++
T Consensus 548 ----~~~~lv~~~l~~P~GLavD~~~~-~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 548 ----DIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSID 586 (791)
T ss_dssp ----CEEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEE
T ss_pred ----CEEEEEECCCCCCEEEEEECCCC-EEEEEECCCCCEEEEE
T ss_conf ----34898848888833899965789-6999757998279881
No 8
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=1.00 E-value=1 Score=60.25 Aligned_cols=169 Identities=9% Similarity=0.086 Sum_probs=89.5
Q ss_pred EEEEECCCCCCEEEEEECCC-------------------------EEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECC
Q ss_conf 54999689982199993075-------------------------59999725899872121057888767766133278
Q 005550 212 LNMVAHPDGSNRAFFSNQEG-------------------------KIWLATIPEQGLGETMELDASSPFADLTDEVHFDT 266 (691)
Q Consensus 212 ~~mv~~pDGs~RlfVaeq~G-------------------------~V~~~~~p~~gsg~~l~~~~~~pfLDi~~~V~~~~ 266 (691)
.++++.||| ++||+...+ .|++++ ++ +|+.++ ......
T Consensus 27 ~~va~d~~G--~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~--~g~~~~------------~~~~~~ 89 (329)
T 3fvz_A 27 SGVALDSKN--NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVID-PN--NAEILQ------------SSGKNL 89 (329)
T ss_dssp EEEEECTTC--CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEEC-TT--TCCEEE------------EECTTT
T ss_pred EEEEECCCC--CEEEEECCCCEEEEECCCCCEEECCCCCCCCCCCCEEEEE-CC--CCEEEE------------CCCCCC
T ss_conf 599999999--9999968997077511575211034565544578699997-99--990884------------428776
Q ss_pred CCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHH
Q ss_conf 88500245488978799799999405899989889876689987898887799999887630599999964998883100
Q 005550 267 EFGLMGMAFHPNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLA 346 (691)
Q Consensus 267 e~GLLGiAfhP~F~~NG~iYvsYs~~~~~~~~~~g~~~~n~~~~~~p~~l~~~ng~~p~~~~~~I~e~~~~~~~~~~s~~ 346 (691)
.....|||++| +|.+|++-+.. .+|.+|..++..
T Consensus 90 ~~~p~gia~d~----~g~l~v~d~~~------------------------------------~~v~~~~~~g~~------ 123 (329)
T 3fvz_A 90 FYLPHGLSIDT----DGNYWVTDVAL------------------------------------HQVFKLDPHSKE------ 123 (329)
T ss_dssp CSSEEEEEECT----TSCEEEEETTT------------------------------------TEEEEECTTCSS------
T ss_pred CCCCEEEEECC----CCCEEEEECCC------------------------------------CEEEEEECCCCE------
T ss_conf 68961899879----99899998999------------------------------------989999289986------
Q ss_pred CCCCCCCEEEEEEECCCC----CCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHH
Q ss_conf 028999708999813788----8844301487588992999935999999976753468999802999925999723466
Q 005550 347 KRAKPSEVRRIFTMGLSF----NGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEI 422 (691)
Q Consensus 347 ~~~~~~~~r~Il~~~~P~----~~H~GG~L~FGp~DG~LYi~~GDgg~~~DP~~~aQn~~sl~GkILRIdvDg~p~~~~~ 422 (691)
.....+-..+.+. .-..-..|.|.|.+|.|||+-+. ..+.|.++|.++...
T Consensus 124 -----~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~----------------~~~~I~~~~~~g~~~---- 178 (329)
T 3fvz_A 124 -----GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY----------------CNSRIVQFSPSGKFV---- 178 (329)
T ss_dssp -----CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS----------------SCCEEEEECTTSCEE----
T ss_pred -----EEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECC----------------CCCEEEEECCCCCEE----
T ss_conf -----8999954567889984445797079996899969999389----------------987699992899899----
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf 43036777678999999889999870897214553012562899982799971699841179730
Q 005550 423 EKLGLWGSYSIPKDNPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIIT 487 (691)
Q Consensus 423 ~~~g~~g~YsIP~dNPF~~~~~~~pEI~A~GlRNP~r~sfDp~~g~~l~~~DvG~d~~EEIn~I~ 487 (691)
...+ ...- .+. ..+ ..+..|.++++|+..+ .||++|.+.+ .|.++.
T Consensus 179 ~~~~---~~g~-~~~-------~~~----~~~~~p~gia~d~~~g-~l~v~d~~~~---~I~~~~ 224 (329)
T 3fvz_A 179 TQWG---EESS-GSS-------PRP----GQFSVPHSLALVPHLD-QLCVADRENG---RIQCFK 224 (329)
T ss_dssp EEEC---EECC-SSS-------CCT----TEESCEEEEEEETTTT-EEEEEETTTT---EEEEEE
T ss_pred EEEC---CCCC-CCC-------CCC----CCCCCCCEEEEECCCC-EEEEEECCCC---EEEEEE
T ss_conf 9965---6788-888-------887----3217976799979999-8999989989---899998
No 9
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=60.02 Aligned_cols=208 Identities=14% Similarity=0.104 Sum_probs=124.0
Q ss_pred CCEEEEEECCCE--EEEEECCCCCCEEEEEEC-CCEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEEEC
Q ss_conf 938999742825--549996899821999930-75599997258998721210578887677661332788850024548
Q 005550 200 GLCLEKIGNGSY--LNMVAHPDGSNRAFFSNQ-EGKIWLATIPEQGLGETMELDASSPFADLTDEVHFDTEFGLMGMAFH 276 (691)
Q Consensus 200 Gfcle~va~Gl~--~~mv~~pDGs~RlfVaeq-~G~V~~~~~p~~gsg~~l~~~~~~pfLDi~~~V~~~~e~GLLGiAfh 276 (691)
+-.++.++.++. .++++.+++. ++|+++. .++|+.+.. + ++. .+ .+...+.....|||++
T Consensus 105 ~~~~~~~~~~~~~~~gl~~d~~~~-~ly~~D~~~~~I~r~~~-~-g~~--~~------------~~~~~~~~~p~glavd 167 (386)
T 3v65_B 105 RSEYTLLLNNLENAIALDFHHRRE-LVFWSDVTLDRILRANL-N-GSN--VE------------EVVSTGLESPGGLAVD 167 (386)
T ss_dssp SCCCEEEECSCSCEEEEEEETTTT-EEEEEETTTTEEEEEET-T-SCC--EE------------EEECSSCSCCCCEEEE
T ss_pred CCCEEEEECCCCCCEEEEEECCCC-EEEEEECCCCCEEEEEC-C-CCC--CE------------EEEECCCCCCCEEEEE
T ss_conf 875778735778637999966788-69997678884799915-8-997--47------------9994899986679998
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHCCCCCCCEEE
Q ss_conf 89787997999994058999898898766899878988877999998876305999999649988831000289997089
Q 005550 277 PNFAKNGRFFASFNCDKVKWPGCAGRCSCNSDVNCDPSKLRGDNGAQPCQYQTVVAEYTVNGTASEPSLAKRAKPSEVRR 356 (691)
Q Consensus 277 P~F~~NG~iYvsYs~~~~~~~~~~g~~~~n~~~~~~p~~l~~~ng~~p~~~~~~I~e~~~~~~~~~~s~~~~~~~~~~r~ 356 (691)
| .++.+|++-... .+|.++..++. ..++
T Consensus 168 ~---~~g~lY~~d~~~------------------------------------~~I~~~~~dg~-------------~~~~ 195 (386)
T 3v65_B 168 W---VHDKLYWTDSGT------------------------------------SRIEVANLDGA-------------HRKV 195 (386)
T ss_dssp T---TTTEEEEEETTT------------------------------------TEEEECBTTSC-------------SCEE
T ss_pred E---CCCEEEEECCCC------------------------------------CEEEEEECCCC-------------CEEE
T ss_conf 5---799199984899------------------------------------94999927997-------------1698
Q ss_pred EEEECCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 99813788884430148758899299993599999997675346899980299992599972346643036777678999
Q 005550 357 IFTMGLSFNGHHGGQLLFGPTDGYMYFMMGDGGGTADPYNFSQNKKSLLGKITRLDVDNIPSAAEIEKLGLWGSYSIPKD 436 (691)
Q Consensus 357 Il~~~~P~~~H~GG~L~FGp~DG~LYi~~GDgg~~~DP~~~aQn~~sl~GkILRIdvDg~p~~~~~~~~g~~g~YsIP~d 436 (691)
++.. .-.....|+++|.+|+||++--. ..++|.|+++||.
T Consensus 196 l~~~----~l~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~-------------------- 235 (386)
T 3v65_B 196 LLWQ----SLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGS-------------------- 235 (386)
T ss_dssp EECS----SCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSC--------------------
T ss_pred EECC----CCCCCCEEEEECCCCEEEEECCC----------------CCCEEEEEECCCC--------------------
T ss_conf 6507----78997479997678969993569----------------9988999937999--------------------
Q ss_pred CCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99988999987089721455301256289998279997169984117973059999964226897679988999998889
Q 005550 437 NPFSEDSGLQPEIWALGLRNPWRCSFDSDRPSYFMCADVGQDVYEEVDIITRGGNYGWRLYEGPYLFTPLETPGGITPLN 516 (691)
Q Consensus 437 NPF~~~~~~~pEI~A~GlRNP~r~sfDp~~g~~l~~~DvG~d~~EEIn~I~kG~NYGWp~~eG~~~~~p~~~p~~~t~~~ 516 (691)
.+..+...++..|.+++||+..+ +||++|.+.+. |..+... |..
T Consensus 236 --------~~~~~~~~~~~~PnGlavd~~~~-~lY~aD~~~~~---I~~~d~d---------G~~--------------- 279 (386)
T 3v65_B 236 --------GRRIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHV---IERANLD---------GSH--------------- 279 (386)
T ss_dssp --------SCEEEECSSCSCEEEEEEEGGGT-EEEEEETTTTE---EEEECTT---------SCS---------------
T ss_pred --------CCEEEEECCCCCEEEEEEECCCC-EEEEEECCCCE---EEEEECC---------CCE---------------
T ss_conf --------85899989988700689957899-89999899997---9999689---------982---------------
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEEE
Q ss_conf 998888633215786588899725410054229999656786899980466047851
Q 005550 517 SVSPIFPVLGYNHSEVNKKEGSASITGGYFYRSMTDPCMFGRYLYADLYATALWAAS 573 (691)
Q Consensus 517 ~~~~i~Pi~~y~H~~~~~~~Gs~SitGG~vYrG~~~P~l~G~yifgD~~~g~lw~~~ 573 (691)
...++.- +-..|.|+.+. .+..+++|+..++|+...
T Consensus 280 ----~~~~~~~---------~~~~P~giav~--------~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 280 ----RKAVISQ---------GLPHPFAITVF--------EDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp ----CEEEECS---------SCSSEEEEEEE--------TTEEEEEETTTTEEEEEE
T ss_pred ----EEEEEEC---------CCCCCEEEEEE--------CCEEEEEECCCCEEEEEE
T ss_conf ----5999979---------99995489998--------999999637887489998
No 10
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=1.00 E-value=1 Score=58.93 Aligned_cols=28 Identities=0% Similarity=-0.086 Sum_probs=20.2
Q ss_pred CCCCCEEEECCCCCEEEEECC--EEEEEECC
Q ss_conf 885205998199849999689--18999669
Q 005550 610 LGYIYSFGEDNRKDIFILTSD--GVYRVVRP 638 (691)
Q Consensus 610 ~gri~sf~ed~dGeLYvlts~--gIYRIv~p 638 (691)
+.+|.+++.++ +.||+.+.. .|+|+-..
T Consensus 519 ~~~P~glav~~-~~ly~tD~~~~~i~~~~k~ 548 (628)
T 4a0p_A 519 ILQPVGLTVFE-NWLYWIDKQQQMIEKIDMT 548 (628)
T ss_dssp CSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEEC-CEEEEEECCCCEEEEEECC
T ss_conf 88968999989-8999997888869999876
Done!