Query 005551
Match_columns 691
No_of_seqs 267 out of 1326
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 01:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1331 Highly conserved prote 100.0 4E-162 9E-167 1345.9 64.9 605 1-685 61-665 (667)
2 KOG2244 Highly conserved prote 100.0 3E-161 7E-166 1279.7 53.8 638 1-684 130-785 (786)
3 PF03190 Thioredox_DsbH: Prote 100.0 1.4E-41 3.1E-46 325.1 8.1 109 1-109 55-163 (163)
4 cd00249 AGE AGE domain; N-acyl 99.9 1.1E-24 2.4E-29 238.8 26.5 259 186-572 16-275 (384)
5 cd00249 AGE AGE domain; N-acyl 99.9 5.7E-22 1.2E-26 217.4 34.0 305 129-572 15-338 (384)
6 cd02955 SSP411 TRX domain, SSP 99.9 1.5E-21 3.2E-26 181.2 9.3 92 1-92 33-124 (124)
7 PF07221 GlcNAc_2-epim: N-acyl 99.8 1.4E-17 3.1E-22 180.7 17.4 237 205-569 1-246 (346)
8 PF07221 GlcNAc_2-epim: N-acyl 99.7 3.2E-16 7E-21 170.1 14.0 271 179-521 38-331 (346)
9 COG2942 N-acyl-D-glucosamine 2 99.6 7E-13 1.5E-17 141.9 24.3 305 193-521 23-359 (388)
10 PF03663 Glyco_hydro_76: Glyco 99.5 1.8E-12 3.9E-17 142.3 22.9 288 132-567 8-315 (370)
11 COG1331 Highly conserved prote 99.4 1.1E-11 2.5E-16 140.5 23.0 160 218-501 402-571 (667)
12 PF03663 Glyco_hydro_76: Glyco 99.1 2.7E-09 5.7E-14 117.4 19.4 159 392-571 91-256 (370)
13 KOG2244 Highly conserved prote 99.0 5E-09 1.1E-13 114.6 13.0 337 28-501 289-679 (786)
14 cd04791 LanC_SerThrkinase Lant 98.9 3E-08 6.6E-13 106.2 17.9 159 385-577 80-238 (321)
15 PF07470 Glyco_hydro_88: Glyco 98.8 2.8E-07 6E-12 100.0 19.7 153 392-571 127-287 (336)
16 COG2942 N-acyl-D-glucosamine 2 98.7 2.7E-06 5.9E-11 91.9 21.8 158 383-567 110-271 (388)
17 cd04791 LanC_SerThrkinase Lant 98.3 6E-05 1.3E-09 80.8 20.7 133 392-569 142-274 (321)
18 PF07944 DUF1680: Putative gly 98.2 0.00012 2.6E-09 84.3 22.4 272 140-565 40-331 (520)
19 COG4225 Predicted unsaturated 98.2 0.00034 7.4E-09 74.4 22.2 271 137-575 19-307 (357)
20 PF07470 Glyco_hydro_88: Glyco 98.0 0.00043 9.4E-09 75.1 19.6 150 399-575 77-227 (336)
21 cd02958 UAS UAS family; UAS is 97.9 8.1E-06 1.8E-10 74.5 3.9 74 1-86 35-110 (114)
22 cd02960 AGR Anterior Gradient 97.7 5.9E-05 1.3E-09 70.7 5.6 52 1-62 41-93 (130)
23 cd04434 LanC_like LanC-like pr 97.7 0.012 2.6E-07 63.0 23.7 155 392-573 102-256 (343)
24 PF06662 C5-epim_C: D-glucuron 97.6 0.0021 4.5E-08 64.1 16.0 144 391-563 32-186 (189)
25 cd04792 LanM-like LanM-like pr 97.6 0.0057 1.2E-07 74.4 22.7 251 211-568 476-734 (825)
26 PF07944 DUF1680: Putative gly 97.4 0.0018 3.9E-08 74.7 14.5 135 392-569 63-208 (520)
27 COG3533 Uncharacterized protei 97.4 0.031 6.8E-07 62.4 22.0 210 138-500 48-263 (589)
28 PF13899 Thioredoxin_7: Thiore 97.3 0.00014 3.1E-09 62.3 2.1 48 1-57 35-82 (82)
29 PF06662 C5-epim_C: D-glucuron 97.2 0.0068 1.5E-07 60.5 14.1 45 224-270 29-73 (189)
30 cd04793 LanC LanC is the cycla 97.2 0.085 1.9E-06 58.3 24.3 143 394-574 177-331 (382)
31 COG4225 Predicted unsaturated 97.2 0.0072 1.6E-07 64.5 14.7 165 398-586 88-255 (357)
32 PLN02171 endoglucanase 97.1 0.018 3.8E-07 67.5 18.0 85 392-495 179-267 (629)
33 PLN02340 endoglucanase 97.1 0.034 7.4E-07 64.9 20.2 187 201-495 73-266 (614)
34 PLN02345 endoglucanase 97.1 0.015 3.2E-07 65.9 16.7 183 201-491 39-228 (469)
35 PF00759 Glyco_hydro_9: Glycos 97.0 0.0031 6.8E-08 71.1 10.4 91 389-497 154-247 (444)
36 PLN03009 cellulase 97.0 0.019 4.1E-07 65.6 16.4 66 201-271 71-139 (495)
37 PLN02909 Endoglucanase 97.0 0.047 1E-06 62.1 19.2 180 201-492 77-264 (486)
38 PLN00119 endoglucanase 96.9 0.035 7.5E-07 63.2 17.5 83 392-491 180-263 (489)
39 PF06917 Pectate_lyase_2: Peri 96.9 0.15 3.2E-06 57.1 21.7 65 213-281 61-129 (557)
40 COG4403 LcnDR2 Lantibiotic mod 96.9 0.092 2E-06 62.3 20.7 223 179-503 595-831 (963)
41 PLN02308 endoglucanase 96.8 0.047 1E-06 62.3 17.9 84 392-493 175-262 (492)
42 TIGR01577 oligosac_amyl oligos 96.8 1 2.2E-05 53.3 29.4 116 129-261 257-393 (616)
43 PLN02266 endoglucanase 96.7 0.12 2.6E-06 59.3 19.6 66 201-271 89-156 (510)
44 PTZ00470 glycoside hydrolase f 96.7 0.22 4.8E-06 57.3 21.7 293 214-582 148-466 (522)
45 KOG2787 Lanthionine synthetase 96.7 0.0077 1.7E-07 63.5 8.9 77 394-500 285-361 (403)
46 PLN02613 endoglucanase 96.6 0.045 9.8E-07 62.5 15.9 181 201-492 69-256 (498)
47 cd04792 LanM-like LanM-like pr 96.6 0.91 2E-05 55.5 28.2 138 392-574 646-785 (825)
48 COG3533 Uncharacterized protei 96.6 0.17 3.7E-06 56.7 18.9 125 392-570 134-262 (589)
49 smart00594 UAS UAS domain. 96.5 0.0014 3E-08 60.7 2.4 53 1-59 45-97 (122)
50 PLN02420 endoglucanase 96.5 0.088 1.9E-06 60.5 17.0 189 201-494 84-277 (525)
51 cd04794 euk_LANCL eukaryotic L 96.5 0.28 6E-06 53.5 20.4 137 394-573 170-307 (343)
52 cd02889 SQCY Squalene cyclase 96.4 0.3 6.6E-06 52.9 19.8 45 225-270 92-138 (348)
53 cd02951 SoxW SoxW family; SoxW 96.3 0.0052 1.1E-07 56.7 4.7 81 1-87 32-119 (125)
54 cd02959 ERp19 Endoplasmic reti 96.2 0.0041 8.9E-08 57.3 3.2 75 1-88 37-114 (117)
55 cd04434 LanC_like LanC-like pr 96.1 1.2 2.7E-05 47.4 22.6 133 394-568 164-298 (343)
56 PTZ00470 glycoside hydrolase f 96.0 0.041 8.9E-07 63.2 11.0 101 465-570 155-256 (522)
57 cd04794 euk_LANCL eukaryotic L 95.7 0.19 4.2E-06 54.7 14.4 79 394-502 229-307 (343)
58 PF01532 Glyco_hydro_47: Glyco 95.6 0.82 1.8E-05 52.0 19.3 295 180-551 98-432 (452)
59 PLN02175 endoglucanase 95.5 0.31 6.6E-06 55.6 15.4 83 392-492 172-258 (484)
60 PF05147 LANC_like: Lanthionin 95.5 0.011 2.4E-07 63.9 3.7 249 224-570 7-262 (355)
61 cd04793 LanC LanC is the cycla 95.2 1.2 2.5E-05 49.3 18.4 84 392-502 247-330 (382)
62 PF01532 Glyco_hydro_47: Glyco 95.1 0.15 3.3E-06 57.9 11.4 164 388-577 76-252 (452)
63 cd02953 DsbDgamma DsbD gamma f 95.1 0.018 3.9E-07 51.2 3.0 63 4-70 32-96 (104)
64 cd02991 UAS_ETEA UAS family, E 94.9 0.042 9.1E-07 50.6 5.2 51 3-59 37-87 (116)
65 cd02892 SQCY_1 Squalene cyclas 94.9 11 0.00024 44.8 26.7 60 203-270 359-421 (634)
66 TIGR01507 hopene_cyclase squal 94.7 12 0.00025 44.7 25.9 60 203-270 365-424 (635)
67 cd02896 complement_C3_C4_C5 Pr 94.6 4.3 9.2E-05 43.5 20.3 77 180-270 48-124 (297)
68 cd02892 SQCY_1 Squalene cyclas 94.4 9.6 0.00021 45.3 24.6 115 126-267 234-349 (634)
69 COG4833 Predicted glycosyl hyd 94.3 0.47 1E-05 49.4 11.3 155 373-551 111-283 (377)
70 PLN02171 endoglucanase 92.8 7.2 0.00016 46.1 19.3 112 144-259 74-216 (629)
71 TIGR01577 oligosac_amyl oligos 92.2 3.3 7.2E-05 49.0 15.8 133 427-571 313-456 (616)
72 KOG2204 Mannosyl-oligosacchari 92.1 1.3 2.8E-05 50.5 11.4 92 468-569 265-363 (625)
73 COG4403 LcnDR2 Lantibiotic mod 92.0 5 0.00011 48.4 16.4 148 385-585 690-839 (963)
74 PRK00293 dipZ thiol:disulfide 91.9 0.15 3.3E-06 59.6 4.1 75 1-86 492-569 (571)
75 TIGR01535 glucan_glucosid gluc 91.8 14 0.00029 44.1 20.1 160 79-261 209-386 (648)
76 TIGR01535 glucan_glucosid gluc 91.1 28 0.00061 41.5 21.8 126 426-569 312-443 (648)
77 PF00759 Glyco_hydro_9: Glycos 90.4 2.2 4.8E-05 48.1 11.7 114 143-260 51-195 (444)
78 PF06202 GDE_C: Amylo-alpha-1, 90.3 30 0.00064 38.4 20.1 113 160-275 90-224 (370)
79 PLN02340 endoglucanase 89.9 43 0.00093 39.7 21.6 110 144-259 74-216 (614)
80 PLN02308 endoglucanase 89.8 40 0.00087 38.9 20.9 111 144-259 72-212 (492)
81 TIGR01507 hopene_cyclase squal 89.4 29 0.00062 41.4 20.1 126 128-270 336-492 (635)
82 cd00688 ISOPREN_C2_like This g 89.1 28 0.00061 35.5 21.7 128 126-268 50-179 (300)
83 PF05147 LANC_like: Lanthionin 89.0 1.9 4.1E-05 46.5 9.3 136 392-569 170-307 (355)
84 PLN02993 lupeol synthase 88.6 4.3 9.4E-05 48.9 12.5 83 181-270 513-611 (763)
85 TIGR03463 osq_cycl 2,3-oxidosq 88.5 62 0.0013 38.6 26.8 62 201-270 356-421 (634)
86 PLN02909 Endoglucanase 88.3 28 0.00061 40.0 18.2 113 144-260 78-221 (486)
87 cd02889 SQCY Squalene cyclase 88.1 16 0.00034 39.6 15.7 142 425-572 43-204 (348)
88 PLN03009 cellulase 87.6 61 0.0013 37.5 22.1 111 144-259 72-213 (495)
89 KOG2429 Glycosyl hydrolase, fa 87.5 11 0.00023 43.3 13.9 35 469-503 375-409 (622)
90 KOG2431 1, 2-alpha-mannosidase 87.4 3.6 7.9E-05 45.4 9.9 122 429-571 151-276 (546)
91 TIGR02474 pec_lyase pectate ly 86.4 0.9 1.9E-05 48.4 4.6 39 230-269 49-87 (290)
92 PF05592 Bac_rhamnosid: Bacter 86.3 5 0.00011 46.2 11.2 114 384-509 199-326 (509)
93 KOG2204 Mannosyl-oligosacchari 85.4 22 0.00048 40.9 14.9 283 226-581 263-571 (625)
94 TIGR01787 squalene_cyclas squa 85.3 89 0.0019 37.2 21.2 28 242-270 382-409 (621)
95 PF06202 GDE_C: Amylo-alpha-1, 85.2 23 0.00051 39.2 15.3 139 428-572 50-209 (370)
96 PRK11509 hydrogenase-1 operon 85.2 1.8 3.8E-05 40.9 5.5 46 9-63 59-105 (132)
97 COG2143 Thioredoxin-related pr 85.1 3.1 6.8E-05 40.2 7.1 88 1-95 60-157 (182)
98 cd02950 TxlA TRX-like protein 84.3 1.7 3.8E-05 41.2 5.2 45 11-63 45-91 (142)
99 PF06917 Pectate_lyase_2: Peri 83.9 4.1 8.8E-05 46.1 8.4 89 424-513 13-116 (557)
100 PRK11097 endo-1,4-D-glucanase; 83.4 18 0.00039 40.2 13.1 131 431-570 74-213 (376)
101 TIGR02474 pec_lyase pectate ly 83.1 48 0.001 35.6 15.7 111 371-503 30-148 (290)
102 COG4833 Predicted glycosyl hyd 81.8 2.9 6.2E-05 43.8 5.8 90 390-511 47-138 (377)
103 KOG0366 Protein geranylgeranyl 81.1 63 0.0014 34.1 15.1 72 431-515 213-284 (329)
104 PF09492 Pec_lyase: Pectic aci 79.9 2.1 4.4E-05 45.7 4.2 47 222-269 33-82 (289)
105 cd00688 ISOPREN_C2_like This g 79.8 74 0.0016 32.4 21.7 77 181-270 49-125 (300)
106 PLN03012 Camelliol C synthase 78.7 14 0.0003 44.7 10.9 65 428-494 639-710 (759)
107 TIGR01561 gde_arch glycogen de 78.2 17 0.00037 42.7 11.3 109 391-512 350-479 (575)
108 TIGR01787 squalene_cyclas squa 77.9 15 0.00033 43.6 11.0 71 183-269 459-529 (621)
109 PF07678 A2M_comp: A-macroglob 76.9 39 0.00085 35.1 12.7 61 199-269 9-69 (246)
110 COG3387 SGA1 Glucoamylase and 76.5 1.7E+02 0.0037 34.8 19.1 69 424-497 443-511 (612)
111 cd02894 GGTase-II Geranylgeran 75.6 1.1E+02 0.0025 32.3 20.4 69 430-513 198-268 (287)
112 KOG2430 Glycosyl hydrolase, fa 74.9 25 0.00053 38.1 10.3 80 179-260 134-220 (587)
113 PF13098 Thioredoxin_2: Thiore 74.7 0.66 1.4E-05 41.4 -1.1 67 3-70 25-105 (112)
114 PRK10137 alpha-glucosidase; Pr 73.8 26 0.00056 42.6 11.5 46 468-513 582-634 (786)
115 PF01270 Glyco_hydro_8: Glycos 72.3 12 0.00025 41.1 7.7 97 392-507 116-216 (342)
116 PLN03012 Camelliol C synthase 71.6 2.5E+02 0.0053 34.4 18.8 59 204-270 471-534 (759)
117 cd02962 TMX2 TMX2 family; comp 71.4 4 8.7E-05 39.4 3.4 77 10-90 71-148 (152)
118 PLN02613 endoglucanase 71.0 2.1E+02 0.0045 33.2 20.9 112 144-260 70-213 (498)
119 TIGR03463 osq_cycl 2,3-oxidosq 70.8 84 0.0018 37.5 14.9 157 392-571 310-489 (634)
120 KOG2430 Glycosyl hydrolase, fa 70.4 27 0.00059 37.7 9.4 96 387-501 183-284 (587)
121 PF05592 Bac_rhamnosid: Bacter 70.1 77 0.0017 36.4 14.2 195 349-573 109-319 (509)
122 PRK13271 treA trehalase; Provi 69.0 1.5E+02 0.0032 35.0 15.9 102 386-511 337-442 (569)
123 PRK11097 endo-1,4-D-glucanase; 68.6 43 0.00094 37.2 11.0 105 381-501 108-215 (376)
124 cd02890 PTase Protein prenyltr 67.7 57 0.0012 34.4 11.5 28 126-153 45-72 (286)
125 PF13249 Prenyltrans_2: Prenyl 67.5 21 0.00046 31.5 7.1 21 247-268 91-111 (113)
126 KOG2787 Lanthionine synthetase 65.7 59 0.0013 35.2 10.7 115 424-566 241-356 (403)
127 cd02949 TRX_NTR TRX domain, no 65.6 6.7 0.00015 34.2 3.3 50 10-68 37-86 (97)
128 PF09492 Pec_lyase: Pectic aci 65.4 25 0.00053 37.7 8.0 83 380-484 34-119 (289)
129 PRK13270 treF trehalase; Provi 65.0 2.3E+02 0.0049 33.3 16.4 129 386-546 347-481 (549)
130 PF01204 Trehalase: Trehalase; 64.5 1.2E+02 0.0026 35.2 14.2 96 384-501 303-402 (512)
131 cd02956 ybbN ybbN protein fami 62.5 9.8 0.00021 32.7 3.8 44 10-62 36-79 (96)
132 PF05426 Alginate_lyase: Algin 62.2 2E+02 0.0043 29.8 15.0 37 220-256 51-87 (272)
133 PRK10996 thioredoxin 2; Provis 61.6 13 0.00028 35.1 4.7 45 10-63 76-120 (139)
134 PF03200 Glyco_hydro_63: Manno 61.6 95 0.0021 38.1 13.1 55 386-452 559-613 (801)
135 PLN02345 endoglucanase 59.1 3.3E+02 0.0072 31.4 16.3 118 424-562 82-228 (469)
136 PLN02266 endoglucanase 58.5 3.5E+02 0.0076 31.5 16.9 125 424-565 130-281 (510)
137 cd03010 TlpA_like_DsbE TlpA-li 54.6 19 0.00042 32.7 4.6 46 9-64 68-116 (127)
138 KOG3760 Heparan sulfate-glucur 54.4 95 0.0021 34.5 10.1 145 390-567 418-585 (594)
139 TIGR00411 redox_disulf_1 small 52.9 23 0.0005 29.3 4.4 44 11-65 24-67 (82)
140 cd02897 A2M_2 Proteins similar 52.4 48 0.001 35.1 7.7 77 181-269 46-122 (292)
141 COG3408 GDB1 Glycogen debranch 51.6 1.2E+02 0.0025 36.4 11.3 98 424-523 362-481 (641)
142 PF04685 DUF608: Protein of un 51.4 59 0.0013 36.0 8.4 39 221-259 95-137 (365)
143 KOG2431 1, 2-alpha-mannosidase 51.2 4.1E+02 0.0089 30.1 18.3 298 212-583 166-490 (546)
144 cd03065 PDI_b_Calsequestrin_N 51.0 26 0.00056 32.5 4.7 44 10-62 55-100 (120)
145 cd02896 complement_C3_C4_C5 Pr 51.0 1.3E+02 0.0028 32.1 10.8 40 226-273 247-286 (297)
146 TIGR01561 gde_arch glycogen de 50.3 2.8E+02 0.006 32.8 14.0 138 428-572 313-468 (575)
147 cd02954 DIM1 Dim1 family; Dim1 49.8 37 0.00079 31.3 5.4 57 20-85 48-109 (114)
148 PRK10137 alpha-glucosidase; Pr 49.1 2.6E+02 0.0057 34.3 13.8 50 389-450 579-631 (786)
149 PF04545 Sigma70_r4: Sigma-70, 48.3 29 0.00064 26.4 3.9 29 344-372 22-50 (50)
150 PF04685 DUF608: Protein of un 47.6 62 0.0013 35.9 7.8 110 384-511 94-217 (365)
151 TIGR02393 RpoD_Cterm RNA polym 46.9 41 0.00089 34.6 6.0 54 297-372 169-226 (238)
152 PF13243 Prenyltrans_1: Prenyl 43.3 6 0.00013 35.1 -0.8 38 231-269 29-66 (109)
153 PF01270 Glyco_hydro_8: Glycos 43.2 3.2E+02 0.0068 29.9 12.5 126 431-572 75-211 (342)
154 PLN00410 U5 snRNP protein, DIM 43.2 42 0.0009 32.2 4.9 49 10-67 47-97 (142)
155 PRK05901 RNA polymerase sigma 43.1 45 0.00097 38.7 6.0 53 298-372 441-497 (509)
156 PRK13683 hypothetical protein; 41.3 29 0.00062 30.2 3.1 40 20-61 13-52 (87)
157 PRK13272 treA trehalase; Provi 39.9 5.8E+02 0.013 30.0 14.3 99 388-511 340-442 (542)
158 TIGR01068 thioredoxin thioredo 39.7 47 0.001 28.1 4.4 44 10-62 38-81 (101)
159 cd03005 PDI_a_ERp46 PDIa famil 39.4 46 0.001 28.6 4.3 48 11-69 41-91 (102)
160 cd02965 HyaE HyaE family; HyaE 38.8 34 0.00073 31.4 3.4 46 10-64 53-98 (111)
161 PRK09381 trxA thioredoxin; Pro 38.5 49 0.0011 29.1 4.4 45 10-63 45-89 (109)
162 PF13905 Thioredoxin_8: Thiore 37.9 16 0.00035 31.3 1.1 44 9-60 48-94 (95)
163 COG3408 GDB1 Glycogen debranch 37.6 4.7E+02 0.01 31.4 13.5 139 428-573 303-462 (641)
164 cd03009 TryX_like_TryX_NRX Try 37.3 56 0.0012 29.8 4.7 20 44-63 95-114 (131)
165 PRK07921 RNA polymerase sigma 37.3 94 0.002 33.9 7.1 53 298-372 256-312 (324)
166 PRK05949 RNA polymerase sigma 36.1 97 0.0021 33.8 7.0 54 297-372 259-316 (327)
167 PF02011 Glyco_hydro_48: Glyco 35.3 2.2E+02 0.0047 33.3 9.6 111 379-505 394-528 (619)
168 cd02961 PDI_a_family Protein D 34.6 59 0.0013 27.2 4.2 43 10-60 39-83 (101)
169 PRK07405 RNA polymerase sigma 34.1 1.1E+02 0.0024 33.1 7.1 53 298-372 250-306 (317)
170 PF08281 Sigma70_r4_2: Sigma-7 34.1 55 0.0012 25.2 3.5 27 344-370 28-54 (54)
171 PF04967 HTH_10: HTH DNA bindi 34.0 64 0.0014 25.6 3.8 30 342-371 23-52 (53)
172 PRK07598 RNA polymerase sigma 33.4 97 0.0021 35.0 6.6 55 297-373 343-401 (415)
173 cd02966 TlpA_like_family TlpA- 32.8 49 0.0011 28.3 3.4 19 45-63 94-112 (116)
174 PLN00119 endoglucanase 32.2 8.6E+02 0.019 28.2 16.9 116 424-563 117-264 (489)
175 cd03003 PDI_a_ERdj5_N PDIa fam 31.9 69 0.0015 27.8 4.2 44 10-62 42-85 (101)
176 PLN02993 lupeol synthase 31.9 2.6E+02 0.0056 34.2 10.2 71 392-481 422-502 (763)
177 TIGR02997 Sig70-cyanoRpoD RNA 31.7 1E+02 0.0022 32.9 6.3 53 297-371 242-298 (298)
178 PF01204 Trehalase: Trehalase; 31.2 71 0.0015 37.1 5.3 44 471-514 317-364 (512)
179 cd02894 GGTase-II Geranylgeran 30.9 3.7E+02 0.008 28.4 10.4 114 130-269 150-265 (287)
180 PRK09210 RNA polymerase sigma 30.6 1.3E+02 0.0028 33.4 6.9 55 297-373 298-356 (367)
181 cd02982 PDI_b'_family Protein 30.4 66 0.0014 27.7 3.8 42 9-58 35-78 (103)
182 PF03200 Glyco_hydro_63: Manno 30.1 4.6E+02 0.0099 32.4 12.0 48 468-515 565-616 (801)
183 PTZ00443 Thioredoxin domain-co 29.0 3.1E+02 0.0068 28.2 9.0 44 10-62 76-119 (224)
184 PRK05658 RNA polymerase sigma 28.5 79 0.0017 37.6 5.1 55 297-373 549-607 (619)
185 cd02984 TRX_PICOT TRX domain, 27.7 87 0.0019 26.6 4.1 45 10-63 38-82 (97)
186 TIGR02957 SigX4 RNA polymerase 27.6 1.2E+02 0.0025 32.1 5.8 53 344-403 126-178 (281)
187 KOG2507 Ubiquitin regulatory p 27.1 1.6E+02 0.0035 33.1 6.7 78 1-92 36-113 (506)
188 PHA02125 thioredoxin-like prot 27.1 1.3E+02 0.0029 24.7 4.9 33 18-62 24-56 (75)
189 cd02998 PDI_a_ERp38 PDIa famil 26.8 1.1E+02 0.0023 26.2 4.5 44 10-61 42-88 (105)
190 PRK13271 treA trehalase; Provi 26.7 94 0.002 36.6 5.2 43 472-514 350-396 (569)
191 cd02897 A2M_2 Proteins similar 25.9 5.9E+02 0.013 26.8 10.9 35 224-262 140-174 (292)
192 TIGR01126 pdi_dom protein disu 25.4 95 0.0021 26.4 3.9 44 10-61 37-82 (102)
193 cd03012 TlpA_like_DipZ_like Tl 24.5 81 0.0018 28.7 3.4 19 45-63 102-120 (126)
194 cd03004 PDI_a_ERdj5_C PDIa fam 24.3 1.1E+02 0.0023 26.6 4.1 44 10-61 43-86 (104)
195 PRK03147 thiol-disulfide oxido 24.2 1.1E+02 0.0024 29.1 4.5 19 45-63 135-153 (173)
196 PRK14018 trifunctional thiored 23.9 89 0.0019 36.4 4.3 20 45-64 136-155 (521)
197 PF13243 Prenyltrans_1: Prenyl 23.7 76 0.0016 27.9 3.0 61 424-494 42-102 (109)
198 COG0568 RpoD DNA-directed RNA 23.6 2.1E+02 0.0046 31.5 6.8 45 305-371 284-328 (342)
199 PRK07406 RNA polymerase sigma 23.3 2.1E+02 0.0045 31.9 6.9 53 298-372 305-361 (373)
200 cd03002 PDI_a_MPD1_like PDI fa 23.1 1.3E+02 0.0027 26.2 4.3 42 10-59 42-85 (109)
201 PRK09636 RNA polymerase sigma 23.1 1.7E+02 0.0038 30.9 6.1 53 344-403 133-185 (293)
202 PLN02710 farnesyltranstransfer 22.9 7.6E+02 0.016 28.2 11.3 118 125-268 89-210 (439)
203 PRK08241 RNA polymerase factor 21.9 2.2E+02 0.0047 30.8 6.7 55 344-402 171-227 (339)
204 PF13249 Prenyltrans_2: Prenyl 21.5 1.5E+02 0.0032 25.9 4.5 44 222-271 21-64 (113)
205 PRK09635 sigI RNA polymerase s 21.4 1.8E+02 0.0038 31.1 5.7 53 344-403 136-188 (290)
206 cd03000 PDI_a_TMX3 PDIa family 21.2 1.5E+02 0.0032 25.9 4.4 39 10-56 39-80 (104)
207 PF14581 SseB_C: SseB protein 21.1 1.4E+02 0.0031 26.6 4.3 39 19-58 50-90 (108)
208 PRK05803 sporulation sigma fac 20.5 3E+02 0.0065 28.0 7.1 30 344-373 197-226 (233)
209 cd02891 A2M_like Proteins simi 20.3 3.9E+02 0.0084 27.6 8.0 77 181-270 46-122 (282)
210 TIGR02937 sigma70-ECF RNA poly 20.0 1.3E+02 0.0028 27.2 3.9 29 344-372 128-156 (158)
No 1
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-162 Score=1345.90 Aligned_cols=605 Identities=42% Similarity=0.710 Sum_probs=564.9
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeeccccCCCCCCCCccHH
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFK 80 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~gTY~P~~~~~g~~gf~ 80 (691)
|++|||+||+||++||++|||||||||||||||++||++||+|||||||||||||||||+|||+||||||++|+|+|||+
T Consensus 61 M~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~ 140 (667)
T COG1331 61 MAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFK 140 (667)
T ss_pred HhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCceeeeeeecCCcccCCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCCCCCCCChhHH
Q 005551 81 TILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEI 160 (691)
Q Consensus 81 ~~L~~i~~~w~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l 160 (691)
+||++|.+.|+++|++++++|+.+.+.++....+. . +..++.+.++++++++.+.||++|||||++||||+|+.+
T Consensus 141 ~lL~~i~~~W~edr~~~~~~a~~~~~~l~~~~~~~-~----~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~pKFP~~~~l 215 (667)
T COG1331 141 QLLEAIRETWREDREELLQSAERVLEALEGLARPS-A----GEELDEEVLDRAAEALARSFDREYGGFGSAPKFPPPHLL 215 (667)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCC-c----cccCChHHHHHHHHHHHHhcchhhCCcCCCCCCCChHHH
Confidence 99999999999999999999999999998765221 1 234567789999999999999999999999999999999
Q ss_pred HHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHc
Q 005551 161 QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL 240 (691)
Q Consensus 161 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~ 240 (691)
.|||+++.+++ ++++++|+.+||++|+.|||||||||||||||||++|.||||||||||||+|+.+|++||++
T Consensus 216 ~~Llr~~~~~~-------d~~~~~~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~~ 288 (667)
T COG1331 216 LFLLRYSLRTG-------DERALDMVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRA 288 (667)
T ss_pred HHHHHHHHhhC-------CHHHHHHHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998754 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeeechHHHHHHhhhhHHHHHHHhcccCCCC
Q 005551 241 TKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGN 320 (691)
Q Consensus 241 tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~DADs~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn 320 (691)
|||++|+++|++|++||+|+|++|+||||+|+||||. ++||+||+||.+||+++||+++++||++|+|+++||
T Consensus 289 tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~-------g~EG~~Y~Ws~eEi~~~Lg~d~~~~~~~f~vs~~Gn 361 (667)
T COG1331 289 TGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSD-------GEEGKYYTWSVEELKEVLGEDAELACKYFDVSEEGN 361 (667)
T ss_pred hCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCc-------ccCCCeeecCHHHHHHHhcccHHHHHHHcccCCCCC
Confidence 9999999999999999999999999999999999995 699999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHH
Q 005551 321 CDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFAR 400 (691)
Q Consensus 321 ~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~ 400 (691)
|+|+||||+..+.++ + +++..++++.+|+||+.+|++|++|++||||+|+|||+||.||+.
T Consensus 362 ------------feGrnvL~~~~~~~~-~------~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~ 422 (667)
T COG1331 362 ------------FEGRNVLHVPGPLEE-A------IEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAE 422 (667)
T ss_pred ------------cCCceeecccCchhh-h------hhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHH
Confidence 689999999988776 2 788999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHH
Q 005551 401 ASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEF 480 (691)
Q Consensus 401 a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~ 480 (691)
|+++++| ++|++.|+++++||.+++++ +++.|.+++|.....++++|||++|.|+|+||++
T Consensus 423 a~~~~~d----------------~~~l~~A~~~~~fi~~~l~~---~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~ 483 (667)
T COG1331 423 AGRVLGD----------------PEYLEAAERAADFILDNLYV---DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEA 483 (667)
T ss_pred HHHHcCC----------------hHHHHHHHHHHHHHHHhhcc---cchheeeecCcccccccchhHHHHHHHHHHHHHh
Confidence 9999999 89999999999999999997 3899999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHH
Q 005551 481 GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQN 560 (691)
Q Consensus 481 Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~ 560 (691)
|+|.+||+.|++|++.++++|||++ ||||+++..++.+++|+++..|+++||+||+++.+|++|+.+||+ ..|.+.
T Consensus 484 t~d~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~---~~y~e~ 559 (667)
T COG1331 484 TGDLAYLEKAIELADEAIADFWDDE-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGD---ARYLEA 559 (667)
T ss_pred hCcHHHHHHHHHHHHHHHHHhcCCC-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCc---hhHHHH
Confidence 9999999999999999999999998 779999999999999999999999999999999999999999996 789999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccEEEEecCCCChhHHHHHHHHHhcCCCCeEEEEeCCCCcchhhhhh
Q 005551 561 AEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVIHIDPADTEEMDFWE 640 (691)
Q Consensus 561 A~~~l~~~~~~i~~~p~~~~~~~~a~~~~~~~~~~~vvivg~~~~~~~~~l~~~~~~~~~P~~~v~~~~~~~~~~~~~~~ 640 (691)
|+++|++|++.+.++|.+++.++.+++.+..+ +.+|||+|. ...++++++.+.|+|+++|++...+.
T Consensus 560 A~~~L~a~~~~~~~~p~~~~~~~~a~~~~~~~-~~~ivvv~~----~~~~~~~~~~~~~~P~~~l~~~~~~~-------- 626 (667)
T COG1331 560 AEDILQAFAGLAERAPFAHAGLLLAAEFLISG-PLVIVVAGD----PRSELLRAALRLYLPEKVLVVGTEGY-------- 626 (667)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHcCC-ceEEEEeCC----CcHHHHHHHHhcCCcceEEEEecccc--------
Confidence 99999999999999999999999999998876 588888882 34579999999999999999864321
Q ss_pred hccccchhhhhccCCCCccEEEEccCCccCCCCCCHHHHHHHhhc
Q 005551 641 EHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLLE 685 (691)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~ayvC~~~~C~~Pvt~~~~l~~~L~~ 685 (691)
+.++.+....+++ ++|||++++|++|++++++|.++|..
T Consensus 627 -----~~~~~~~~l~~g~-~ayvC~~~~C~~P~~~~e~l~~~l~~ 665 (667)
T COG1331 627 -----VSLLVDGMLGGGK-TAYVCTGDACLPPVTSPEELAELLAV 665 (667)
T ss_pred -----cCcchhhccCCCC-eEEEecCCccCCCcCCHHHHHHHHhh
Confidence 1112221122445 99999999999999999999999864
No 2
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=100.00 E-value=3.1e-161 Score=1279.66 Aligned_cols=638 Identities=61% Similarity=1.011 Sum_probs=591.8
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeeccccCCCCCCCCccHH
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFK 80 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~gTY~P~~~~~g~~gf~ 80 (691)
||+|||+|||++++||++||+||||||||||||++||+++|+..|+|||||+||||||++||.|||||||+++||||||+
T Consensus 130 mekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV~LTPdL~PlvgGTYFPP~d~~g~~gF~ 209 (786)
T KOG2244|consen 130 MEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSVFLTPDLKPLVGGTYFPPNDNYGRPGFK 209 (786)
T ss_pred eecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCceeEEeCCCcccccCCcccCCCCCCCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCCCCCCCChhHH
Q 005551 81 TILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEI 160 (691)
Q Consensus 81 ~~L~~i~~~w~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l 160 (691)
+||.+|++.|.++|+.+++.+..+++.|++...+.++ .. ..+++++.+.++.+++|||.+||||.+..|
T Consensus 210 TvL~~I~~~w~~kr~tllet~~~~is~ls~al~peaa-------~g----~~~~ekl~e~i~~~~qGfg~apKFP~~~~L 278 (786)
T KOG2244|consen 210 TVLKKIKDAWNSKRDTLLETGTYAISELSKALSPEAA-------TG----DNRAEKLSEGISREAQGFGEAPKFPKACDL 278 (786)
T ss_pred HHHHHHHHHHHhhhhHHHhhhHHHHHHHHhhcCcccc-------cc----chhHHHHHHHHHHHhhhhccCCCCCCcccc
Confidence 9999999999999999999998888888754442111 11 245678889999999999999999999999
Q ss_pred HHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHc
Q 005551 161 QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL 240 (691)
Q Consensus 161 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~ 240 (691)
.||+.+... +.+++.+.|+.+||+.|+.|||+|||||||||||||..|+|||||||||||+||+.+|++||++
T Consensus 279 ~FLf~~~lt-------~k~~d~~~Mvl~TL~~manGGihDHIg~GFhRYsv~~~WHvpHFEKMLYDQ~QL~~aysdafkl 351 (786)
T KOG2244|consen 279 DFLFTFNLT-------SKADDEKSMVLFTLQGMANGGIHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANAYSDAFKL 351 (786)
T ss_pred ceeeeeccc-------ccCcHHHHHHHHHHHHHhcCCccccccCceeeccccccccchhHHHHHhhHHHHHHHHHhhhhc
Confidence 999987432 3457899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeeechHHHHHHhhhh-------HHHHHHHh
Q 005551 241 TKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH-------AILFKEHY 313 (691)
Q Consensus 241 tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~DADs~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~-------~~~~~~~~ 313 (691)
|+|+.|..+|+++++||.++|.+|+||||+++||||.+..|++.++||+||+||.+||+++|++. +++++.+|
T Consensus 352 T~de~y~~va~~I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~~i~p~~~fdl~a~hy 431 (786)
T KOG2244|consen 352 TKDEMYSYVARDILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGENAIGPASLFDLFAEHY 431 (786)
T ss_pred chhHHHHHHHHHHHHHHHHhccCCCCCcccccccCCCcccccccccccceEEeeHHHHHHHhCCCCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999975 49999999
Q ss_pred cccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHH
Q 005551 314 YLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL 393 (691)
Q Consensus 314 ~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal 393 (691)
|+++.||+. +-+||||++.|+|||..+.+.++.|..|+++++++++.|.+++++|.++|.+||+|++|+|||++||||
T Consensus 432 gvk~sGnvs--~ssDPhgel~gkNVL~vr~s~e~taanf~lsve~~kkll~e~~e~L~~aR~kRPkPHLDsKii~sWnGL 509 (786)
T KOG2244|consen 432 GVKKSGNVS--SSSDPHGELAGKNVLIVRNSTEATAANFSLSVEKYKKLLGECREKLFDARLKRPKPHLDSKIIVSWNGL 509 (786)
T ss_pred CCCCCCCCC--CCCCCcccccCceEEEEecchHhhHhhccccHHHHHHHHHHHHHHHHHHhhcCCCCCccchheeeccch
Confidence 999999974 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE-EecCCC----------CCCCC
Q 005551 394 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH-SFRNGP----------SKAPG 462 (691)
Q Consensus 394 ~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~-~~~~g~----------~~~~~ 462 (691)
||++|++|+.+++.. ++|++.|..+++|+.++|+|...+.|.+ +.++|. ...++
T Consensus 510 viSgl~kag~~~~a~---------------~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~ 574 (786)
T KOG2244|consen 510 VISGLAKAGKILKAE---------------PEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPA 574 (786)
T ss_pred hhHHHHHHHHHhhcC---------------HHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccch
Confidence 999999999999872 6999999999999999999987777777 444332 13467
Q ss_pred CcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHH
Q 005551 463 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 542 (691)
Q Consensus 463 ~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~L 542 (691)
|++||||+|.|||+||+++|+.+||+||.+|++.+..+||| +||||.+..+++.+++|.|+++||++||+|||.++||
T Consensus 575 FldDYAFlI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNL 652 (786)
T KOG2244|consen 575 FLDDYAFLISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNL 652 (786)
T ss_pred hhhhHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccchhhhhH
Confidence 99999999999999999999999999999999999999999 8899998888999999999999999999999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccEEEEecCCCChhHHHHHHHHHhcCCCC
Q 005551 543 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLN 622 (691)
Q Consensus 543 lrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~~~~a~~~~~~~~~~~vvivg~~~~~~~~~l~~~~~~~~~P~ 622 (691)
+||+.+++. +.|+++|.++|..|+.++.+.|.+.|.|++|+. ..+++.++|||||+++++++.+++.++++.|+|+
T Consensus 653 vrL~~~~~~---e~yl~ka~~ll~~fseRl~~vpvAlPeM~~Al~-~~q~glk~vvlvGd~~s~d~~~~vs~~~s~yipn 728 (786)
T KOG2244|consen 653 VRLASIVAA---ESYLNKAHRLLAVFSERLREVPVALPEMCCALM-ISQPGLKQVVLVGDKSSPDLTNMVSAAHSVYIPN 728 (786)
T ss_pred HHHHHHhhH---HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH-hhccCcceEEEECCCCChHHHHHHHHHHHhcCCc
Confidence 999999985 889999999999999999999999999999775 5556689999999999999999999999999999
Q ss_pred eEEEEeCCCCcchhhhhhhccccchhhhhccCCCCccEEEEccCCccCCCCCCHHHHHHHhh
Q 005551 623 KTVIHIDPADTEEMDFWEEHNSNNASMARNNFSADKVVALVCQNFSCSPPVTDPISLENLLL 684 (691)
Q Consensus 623 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayvC~~~~C~~Pvt~~~~l~~~L~ 684 (691)
++||+++|+++ .+++....++...|.+ .++++++|||++++|++||+++.+|+++|.
T Consensus 729 ~~vihidpsd~--ee~s~~~ls~ka~m~~---~g~k~tayvC~~~aC~~PVtdpqeLe~l~s 785 (786)
T KOG2244|consen 729 KTVIHIDPSDE--EEFSEEHLSNKAEMAK---NGEKVTAYVCQHFACSPPVTDPQELERLLS 785 (786)
T ss_pred ceEEEeCCCCH--HHHHhccCchHHHHHh---cCCCceEEEecCcccCCCCCCHHHHHHHhc
Confidence 99999988654 4566666677777765 478999999999999999999999999885
No 3
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=100.00 E-value=1.4e-41 Score=325.07 Aligned_cols=109 Identities=56% Similarity=1.070 Sum_probs=92.7
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeeccccCCCCCCCCccHH
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFK 80 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~gTY~P~~~~~g~~gf~ 80 (691)
|++|||+||+||++||++|||||||||||||||++||+++|+|+|+|||||||||||||+|||+||||||++++|+|||+
T Consensus 55 M~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~ 134 (163)
T PF03190_consen 55 MERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFL 134 (163)
T ss_dssp HHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HH
T ss_pred hcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 005551 81 TILRKVKDAWDKKRDMLAQSGAFAIEQLS 109 (691)
Q Consensus 81 ~~L~~i~~~w~~~~~~~~~~a~~~~~~l~ 109 (691)
++|++|+++|+++|++|.+.|++|.++|+
T Consensus 135 ~~l~~i~~~w~~~~~~~~~~a~~i~~~l~ 163 (163)
T PF03190_consen 135 QLLERIAELWKENREQVEESADEILEALQ 163 (163)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHT-SHH-
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999988774
No 4
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.93 E-value=1.1e-24 Score=238.81 Aligned_cols=259 Identities=20% Similarity=0.188 Sum_probs=210.9
Q ss_pred HHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC
Q 005551 186 VLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG 265 (691)
Q Consensus 186 ~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~ 265 (691)
....|..... -.+|+..|||+ .++|.++.+..-.|.+|.||++|++|+.+|++++++.+++.|+++++||.+++++++
T Consensus 16 ~~~~~~fw~~-~~~d~~~gg~~-~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~ 93 (384)
T cd00249 16 LEDLLPFWLE-AGLDREAGGFF-ECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPD 93 (384)
T ss_pred HHHHHHHHHh-cCCCCCCCCeE-EEECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCC
Confidence 3444444444 35899999999 589999997666899999999999999999999999999999999999999999988
Q ss_pred -CceeeeccCCcccccCcccccCCceeeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCC
Q 005551 266 -GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELND 344 (691)
Q Consensus 266 -Ggfysa~DADs~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~ 344 (691)
||||.+.|.|..+.+ .
T Consensus 94 ~Gg~~~~~~~~g~~~~-----------------------------------------------------~---------- 110 (384)
T cd00249 94 HGGWYFALDQDGRPVD-----------------------------------------------------A---------- 110 (384)
T ss_pred CCCEEEEEcCCCCCcc-----------------------------------------------------c----------
Confidence 999998876542100 0
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChH
Q 005551 345 SSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRK 424 (691)
Q Consensus 345 ~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~ 424 (691)
.+.+.+ .+++|.||+.+++++++ +
T Consensus 111 ----------------------------------~~~l~~------~a~~l~ala~~~~at~d----------------~ 134 (384)
T cd00249 111 ----------------------------------TKDLYS------HAFALLAAAQAAKVGGD----------------P 134 (384)
T ss_pred ----------------------------------ccchHH------HHHHHHHHHHHHHhcCC----------------H
Confidence 001222 38999999999999998 8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccc
Q 005551 425 EYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 504 (691)
Q Consensus 425 ~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~ 504 (691)
+|++.|+++++++.++++ +++|+++.....+....++ .++|++++.+++.++++|+|++|++.|+++++.+.++|+++
T Consensus 135 ~~l~~A~~~~~~l~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~ 212 (384)
T cd00249 135 EARALAEETIDLLERRFW-EDHPGAFDEADPGTPPYRG-SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDA 212 (384)
T ss_pred HHHHHHHHHHHHHHHHhc-cCCCcccCCCCCCCCCCCC-CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999 4456665443322233445 79999999999999999999999999999999999999998
Q ss_pred cCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 005551 505 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 572 (691)
Q Consensus 505 ~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i 572 (691)
++|+++....++..++ ..+..+.+.|++++.++++|++|++++++ +.|.+.|++++..+....
T Consensus 213 ~~G~~~e~~~~~~~~~--~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~---~~~~~~a~~~~~~~~~~~ 275 (384)
T cd00249 213 ESGVVREHFDEDWNPY--NGDKGRHQEPGHQFEWAWLLLRIASRSGQ---AWLIEKARRLFDLALALG 275 (384)
T ss_pred ccCeEEEEECCCCCCC--cCcCCCcCCCchHHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHhC
Confidence 8888876665554443 34455778899999999999999999985 789999999988876544
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.91 E-value=5.7e-22 Score=217.35 Aligned_cols=305 Identities=15% Similarity=0.088 Sum_probs=229.5
Q ss_pred HHHHHHHHHHh-cccccCCCCCC------CC----CCCC--hhHHHHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHh
Q 005551 129 ALRLCAEQLSK-SYDSRFGGFGS------AP----KFPR--PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAK 195 (691)
Q Consensus 129 ~~~~~~~~l~~-~~D~~~GGfg~------ap----KFP~--~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~ 195 (691)
.++.++..|.+ .+|+++|||.. .| |.=. .-.+..+..+++.. .+++++++|.++++.|..
T Consensus 15 ~~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~-------~~~~~l~~A~~~~~fl~~ 87 (384)
T cd00249 15 LLEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLG-------WRPEWLEAAEHGLEYLDR 87 (384)
T ss_pred HHHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhc-------CChhHHHHHHHHHHHHHH
Confidence 45677888877 58999999955 12 2211 11122222233322 357899999999999988
Q ss_pred CCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCC
Q 005551 196 GGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDAD 275 (691)
Q Consensus 196 GGi~D~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~DAD 275 (691)
-.+|...|||++ ++|.+|.+.+..|+|||+|.++.+|+.+|++|+++.|++.|+++++++.++++++.|++|...+.|
T Consensus 88 -~~~d~~~Gg~~~-~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~ 165 (384)
T cd00249 88 -HGRDPDHGGWYF-ALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPG 165 (384)
T ss_pred -hCcCCCCCCEEE-EEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC
Confidence 677877799985 999999988889999999999999999999999999999999999999999985557776443322
Q ss_pred cccccCcccccCCceeeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCC
Q 005551 276 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 355 (691)
Q Consensus 276 s~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~ 355 (691)
.. .
T Consensus 166 ~~------------------------------------------~----------------------------------- 168 (384)
T cd00249 166 TP------------------------------------------P----------------------------------- 168 (384)
T ss_pred CC------------------------------------------C-----------------------------------
Confidence 10 0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005551 356 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 435 (691)
Q Consensus 356 ~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~ 435 (691)
.|...+ ++.++.+|.+++.++++ ++|++.|+++++
T Consensus 169 -----------------------~~~~~~------~~h~~~all~l~~~tgd----------------~~~~~~A~~l~~ 203 (384)
T cd00249 169 -----------------------YRGSNP------HMHLLEAMLAAYEATGE----------------QKYLDRADEIAD 203 (384)
T ss_pred -----------------------CCCCCh------hHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHH
Confidence 000011 14458889999999998 899999999999
Q ss_pred HHHHhccccCCCeEEEEecCCCCCCC------CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcc
Q 005551 436 FIRRHLYDEQTHRLQHSFRNGPSKAP------GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGY 509 (691)
Q Consensus 436 ~l~~~~~d~~~g~l~~~~~~g~~~~~------~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~ 509 (691)
.+.++++++.+|+++..+.++..... ..+.-.+..+.+++.+++++++++|++.|+++++.+.++++|+++|++
T Consensus 204 ~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~ 283 (384)
T cd00249 204 LILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGL 283 (384)
T ss_pred HHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCE
Confidence 99999998777888766543311011 111124456789999999999999999999999999999999998888
Q ss_pred ccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 005551 510 FNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 572 (691)
Q Consensus 510 f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i 572 (691)
|++..++... ...|+..+++++.++.+++.|+.+||+ +.|.+.++++++......
T Consensus 284 ~~~~~~~~~~-----~~~~~~~~w~~~E~~~a~~~l~~~tgd---~~~~~~~~~~~~~~~~~~ 338 (384)
T cd00249 284 YYSFLDDGGL-----LEDDDKRWWPQTEALKAALALAGITGD---ERYWQWYQRAWAYLWRHF 338 (384)
T ss_pred EEeeECCCCC-----cccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhc
Confidence 8732222221 245789999999999999999999995 679999988888875443
No 6
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.85 E-value=1.5e-21 Score=181.16 Aligned_cols=92 Identities=71% Similarity=1.298 Sum_probs=89.7
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeeccccCCCCCCCCccHH
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFK 80 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~gTY~P~~~~~g~~gf~ 80 (691)
|++++|.||+|++.||++||+||||+|+.|++++.||+..+.+.|.+|||+.|||+|+|+|++++||||++++++.+||+
T Consensus 33 me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~ 112 (124)
T cd02955 33 MEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFK 112 (124)
T ss_pred HHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 005551 81 TILRKVKDAWDK 92 (691)
Q Consensus 81 ~~L~~i~~~w~~ 92 (691)
++|++|.++|++
T Consensus 113 ~~~~~~~~~~~~ 124 (124)
T cd02955 113 TVLEKIRELWRE 124 (124)
T ss_pred HHHHHHHHHHhC
Confidence 999999999973
No 7
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.75 E-value=1.4e-17 Score=180.68 Aligned_cols=237 Identities=19% Similarity=0.247 Sum_probs=175.6
Q ss_pred cEEEEEcCCCCCC-CCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeeeccCCcccccCc
Q 005551 205 GFHRYSVDERWHV-PHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDADSAETEGA 282 (691)
Q Consensus 205 GF~RYsvD~~W~v-PHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~-Ggfysa~DADs~~~~~~ 282 (691)
|||- ++|.++++ +-..|.+.-||+++++|+.||+ +|++.|+++|+++++||.+.+++++ ||||++.|.+. +.
T Consensus 1 Gf~~-~ld~~g~~~~~~~k~~~~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~~--- 74 (346)
T PF07221_consen 1 GFFE-CLDRDGKPDDSDKKRLWVQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-PL--- 74 (346)
T ss_dssp SBE--EBBTTS-BECGGEEEHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE-EE---
T ss_pred Ccee-eeCCCCCCCCCCCceeeeeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC-CC---
Confidence 6776 58999986 5556699999999999999999 8899999999999999999999877 99998876432 00
Q ss_pred ccccCCceeeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHH
Q 005551 283 TRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNI 362 (691)
Q Consensus 283 ~~~~EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~ 362 (691)
.+.
T Consensus 75 ---------------------------------------------------~~~-------------------------- 77 (346)
T PF07221_consen 75 ---------------------------------------------------DPQ-------------------------- 77 (346)
T ss_dssp ---------------------------------------------------E----------------------------
T ss_pred ---------------------------------------------------ccc--------------------------
Confidence 000
Q ss_pred HHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 005551 363 LGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 442 (691)
Q Consensus 363 l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~ 442 (691)
.-..-++++|.||+. +.++++ +++++.|+++.++|.++++
T Consensus 78 -----------------------~~~Y~~af~l~ala~-~~~tg~----------------~~~~~~A~~~~~~l~~~~~ 117 (346)
T PF07221_consen 78 -----------------------KDLYDQAFALLALAE-ARATGD----------------PEALELAEQTLEFLERRFW 117 (346)
T ss_dssp -----------------------EEHHHHHHHHHHHHH-HHCTT-----------------TTHHHHHHHHHHHHHHHTE
T ss_pred -----------------------cchHHHHHHHHHHHH-HHHhCC----------------hhHHHHHHHHHHHHHHHhc
Confidence 001125899999999 788888 6899999999999999999
Q ss_pred ccCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCc---cccCCCCCCcc
Q 005551 443 DEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSV 519 (691)
Q Consensus 443 d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg---~f~~~~~~~~l 519 (691)
+++.|++...+.... ...+..++++++++|++.||++|+++.|+++|.+|.+.+.++|+|+++|. ||+..+ .+
T Consensus 118 d~~~g~~~~~~~~~~-~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw---~~ 193 (346)
T PF07221_consen 118 DPEGGGYRESFDPDW-SPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDW---NP 193 (346)
T ss_dssp ETTTTEE--EETTTS-SCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTS---EB
T ss_pred ccccCcceeccCCcc-ccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeecccc---cc
Confidence 987676655443322 12245899999999999999999999999999999999999999988774 444332 11
Q ss_pred cc--ccccCCC--CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 005551 520 LL--RVKEDHD--GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFE 569 (691)
Q Consensus 520 ~~--r~~~~~D--~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~ 569 (691)
.. ...+... ...|.++-.+++.|++++..++.. ++.+.+.|.+++....
T Consensus 194 ~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~-~~~~~~~a~~l~~~~~ 246 (346)
T PF07221_consen 194 LPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRG-DPDWLERARRLFDFAL 246 (346)
T ss_dssp ETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT--HTHHHHHHHHHHHHH
T ss_pred ccccccccccccCccCCchhHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHH
Confidence 10 0000011 257999999999999999444432 3678888877766544
No 8
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.67 E-value=3.2e-16 Score=170.14 Aligned_cols=271 Identities=21% Similarity=0.200 Sum_probs=179.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 005551 179 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 258 (691)
Q Consensus 179 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~ 258 (691)
.+..+++|.+.++.|.. ..+|...|||++ +++... +....|.+|++|..+.++++ +.+++++.+++.|++++++|.
T Consensus 38 ~~~~l~~A~~~~~fl~~-~~~D~~~Gg~~~-~~~~~~-~~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~ 113 (346)
T PF07221_consen 38 RPEYLELAEHGFDFLRK-HFRDPEYGGWYR-SLDDGG-PLDPQKDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLE 113 (346)
T ss_dssp SHHHHHHHHHHHHHHHH-TTBTTTTSSBSS-EEETTE-EEE--EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH-hcccCCCCCEEE-EeCCCC-CCccccchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHH
Confidence 47899999999999988 677999999997 556555 67779999999999999999 899999999999999999999
Q ss_pred HhccCCCCce-eeeccCCcccccCcccccCCceeeechHHHHHHhhhh---HHHHHHHhcccCCCCcCCCCCCCCCCccC
Q 005551 259 RDMIGPGGEI-FSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH---AILFKEHYYLKPTGNCDLSRMSDPHNEFK 334 (691)
Q Consensus 259 ~~m~~~~Ggf-ysa~DADs~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~---~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~ 334 (691)
+.++++.+|+ ..+.+.|.... . -.+.. .+.+...+.++.+..
T Consensus 114 ~~~~d~~~g~~~~~~~~~~~~~--------------r------~~n~~mhl~eA~l~l~~~~~~~~-------------- 159 (346)
T PF07221_consen 114 RRFWDPEGGGYRESFDPDWSPP--------------R------GQNPHMHLLEAFLALYEATGDPR-------------- 159 (346)
T ss_dssp HHTEETTTTEE--EETTTSSCB--------------E------EHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHhcccccCcceeccCCccccC--------------C------CCChhHHHHHHHHHHHHhccCHH--------------
Confidence 9999997444 44555543110 0 00000 111111222221000
Q ss_pred CcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCc--chhhchH------------HH---HHHH
Q 005551 335 GKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDD--KVIVSWN------------GL---VISS 397 (691)
Q Consensus 335 g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R~~P~~Dd--kilt~WN------------al---~i~a 397 (691)
-.+.+.+.++.+..+.......+.+-++|. +.+...+ |. .+|-
T Consensus 160 --------------------~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wl 219 (346)
T PF07221_consen 160 --------------------YLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWL 219 (346)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHH
Confidence 012333444444544444333333333333 2222111 22 3667
Q ss_pred HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCC-CCCCCcccHHHHHHHHH
Q 005551 398 FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPS-KAPGFLDDYAFLISGLL 475 (691)
Q Consensus 398 La~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~-~~~~~l~DyA~li~all 475 (691)
|.++++..+.. .+++++.|++++++..++-|+++.|+++.. -.+|.+ ...+.++.++.++.|++
T Consensus 220 l~~~~~~~~~~--------------~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~ 285 (346)
T PF07221_consen 220 LLEAARLTGRG--------------DPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALL 285 (346)
T ss_dssp HHHHHHHCHCT---------------HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHH
T ss_pred HHHHHHhcccc--------------cHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHH
Confidence 77777433331 278999999999999999999888877766 456665 45688999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcccc
Q 005551 476 DLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLL 521 (691)
Q Consensus 476 ~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~ 521 (691)
.+|+.||++.|++++.++.+.+.++|.|++.|+||+.-..++.+..
T Consensus 286 ~~~~~tg~~~~~~~~~~~~~~~~~~~~d~~~G~W~~~l~~dg~~~~ 331 (346)
T PF07221_consen 286 AAYELTGDEKYLDWARRVWDYIFRHFIDPEYGEWFDYLDRDGSPLE 331 (346)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHTB-TTTSSB-SEE-TTS-BSC
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHhCCCCCCCeeEeeECCCCCCCC
Confidence 9999999999999999999999999999999999987666655433
No 9
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=7e-13 Score=141.94 Aligned_cols=305 Identities=16% Similarity=0.120 Sum_probs=230.2
Q ss_pred HHhCCCcccCCCcEEEEEcCCCCCCCC-CchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 005551 193 MAKGGIHDHVGGGFHRYSVDERWHVPH-FEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 271 (691)
Q Consensus 193 m~~GGi~D~v~GGF~RYsvD~~W~vPH-fEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa 271 (691)
|-..--.|..+||||- +.|.+..+-- -.|.+-.+++++++|+.|+.+...+.++++|.+.++|+.+..++++||+|.+
T Consensus 23 ~w~~~g~d~~~GGffe-~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~ 101 (388)
T COG2942 23 FWLNAGVDTEGGGFFE-ALDRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYFA 101 (388)
T ss_pred hhcccCcCCCCCCcee-eeccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEEE
Confidence 4455667999999997 6677777654 6788999999999999999999888899999999999999999999999999
Q ss_pred ccCCcccccCcccccCCceeeechHHHHHHhhhhH--------HHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccC
Q 005551 272 EDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA--------ILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELN 343 (691)
Q Consensus 272 ~DADs~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~~--------~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~ 343 (691)
++.|..+.+.+++...-+|-+...+.+..+.++++ ++..++|-=.+.+-.-.+-.+++......+.++|+.+
T Consensus 102 ~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl~sNp~MHl~E 181 (388)
T COG2942 102 LDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPLGSNPHMHLLE 181 (388)
T ss_pred ecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCccCCCcchHHHH
Confidence 99999888888888888888888888777776542 2333332211111110011122222233445555543
Q ss_pred CchHHHHhcCCC-----HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHH------------H---HHHHHHHHH
Q 005551 344 DSSASASKLGMP-----LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL------------V---ISSFARASK 403 (691)
Q Consensus 344 ~~~~~a~~~g~~-----~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal------------~---i~aLa~a~~ 403 (691)
. +...+..+ .+.+.++.+.+..+..+.+..+.+-++|.. ||-- . .+.|..-++
T Consensus 182 A---~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d----W~p~~~frg~~~ePGH~fEW~~Lll~~a~ 254 (388)
T COG2942 182 A---MLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD----WNPAHGFRGRGIEPGHQFEWAWLLLDIAR 254 (388)
T ss_pred H---HHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc----CCcCCCcccCCCCCchHHHHHHHHHHHHH
Confidence 2 22222222 234556677788888899999998888887 7632 1 345666666
Q ss_pred HhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC-CCCCCcccHHHHHHHHHHHHHHc
Q 005551 404 ILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLDDYAFLISGLLDLYEFG 481 (691)
Q Consensus 404 ~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~-~~g~~-~~~~~l~DyA~li~all~Ly~~T 481 (691)
..++ ...+..|+++++-.+++-||++.|+++-++ .||.+ +..+.+++++..+.+++.|+..|
T Consensus 255 ~~~~----------------~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~ 318 (388)
T COG2942 255 RRGR----------------AWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETT 318 (388)
T ss_pred Hhch----------------hHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcC
Confidence 6665 678999999999999999999988888774 57765 45688999999999999999999
Q ss_pred C-ChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcccc
Q 005551 482 S-GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLL 521 (691)
Q Consensus 482 g-d~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~ 521 (691)
+ ++.|.++..++.+.+..+|.|++.|.+|+.-..++.++.
T Consensus 319 ~~~~~y~~~~~R~~~~~~~hl~d~~~G~W~~~l~~dg~~~~ 359 (388)
T COG2942 319 GARERYWQWYARAWDYLWWHLDDPEYGLWFDKLDEDGEVLL 359 (388)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCcCCcchhhcCCCCceec
Confidence 9 999999999999999999999999999987665554443
No 10
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.50 E-value=1.8e-12 Score=142.32 Aligned_cols=288 Identities=19% Similarity=0.257 Sum_probs=180.1
Q ss_pred HHHHHHHhccccc-CCCCCC---CC--CCCChhHHHHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCc
Q 005551 132 LCAEQLSKSYDSR-FGGFGS---AP--KFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG 205 (691)
Q Consensus 132 ~~~~~l~~~~D~~-~GGfg~---ap--KFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GG 205 (691)
.++..+.+.|+.. .|++.+ .| ..|.+..+..|..++.+++ +.+..+++..++..+.... +|.
T Consensus 8 ~~~~~l~~~y~~~~~g~~~g~~~~~~~~W~~a~~~~~~~d~~~~t~-------d~~y~~~~~~~~~~~~~~~-~~~---- 75 (370)
T PF03663_consen 8 SAADALQKYYNGNASGNIPGLFPSPYYWWWQAVMLSALIDYYRRTG-------DPTYNDLIQNALLNQRGPN-YDS---- 75 (370)
T ss_dssp HHHHHHHHHHB-SSTTT-B-SEES--H-HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHT-TSS----
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCcChHHHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHhccc-ccc----
Confidence 3455556777876 555432 12 3555667788888888764 3788999999998887644 110
Q ss_pred EEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHHHHhccCCC---CceeeeccCCcc
Q 005551 206 FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDV-----FYSYICRDILDYLRRDMIGPG---GEIFSAEDADSA 277 (691)
Q Consensus 206 F~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~-----~y~~~A~~~~~~l~~~m~~~~---Ggfysa~DADs~ 277 (691)
|.. ..|. ...-.-|||.+..++.+||++|+++ .|++.|+++.+++... +++. ||+++..+.-..
T Consensus 76 ~~~----~~~~---~~~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~-wd~~~cgGGi~W~~~~~~~ 147 (370)
T PF03663_consen 76 YNP----SNGS---GDRYYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISG-WDDTSCGGGIWWSIDDTNS 147 (370)
T ss_dssp S------S---------BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHT-B-SGG-GS-BEEET----T
T ss_pred ccc----cccc---ccCccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHh-cCCccCCCCccccccccCC
Confidence 110 0000 1123447999999999999999999 9999999999999954 4443 888875321000
Q ss_pred cccCcccccCCceeeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHH
Q 005551 278 ETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLE 357 (691)
Q Consensus 278 ~~~~~~~~~EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~ 357 (691)
+ ...||
T Consensus 148 -----------------------------------------~-------------~~~Kn-------------------- 153 (370)
T PF03663_consen 148 -----------------------------------------G-------------YDYKN-------------------- 153 (370)
T ss_dssp -----------------------------------------E-------------EEEEE--------------------
T ss_pred -----------------------------------------C-------------CCccc--------------------
Confidence 0 01111
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHH
Q 005551 358 KYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFI 437 (691)
Q Consensus 358 ~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l 437 (691)
+--|+.++.+.+++|+++++ +.|++.|+++.+|+
T Consensus 154 ------------------------------a~sN~~~~~laarL~~~t~~----------------~~Yl~~A~~~~~W~ 187 (370)
T PF03663_consen 154 ------------------------------AISNGPAAQLAARLYRITGD----------------QTYLDWAKKIYDWM 187 (370)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred ------------------------------ccchHHHHHHHHHHHHhcCC----------------hHHHHHHHHHHHHh
Confidence 12489999999999999988 78999999999999
Q ss_pred HH-hccccCCCeEEEEec-CC---CCCCCCCcccHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHhcccccCCcccc
Q 005551 438 RR-HLYDEQTHRLQHSFR-NG---PSKAPGFLDDYAFLISGLLDLYEFGSGT-KWLVWAIELQNTQDELFLDREGGGYFN 511 (691)
Q Consensus 438 ~~-~~~d~~~g~l~~~~~-~g---~~~~~~~l~DyA~li~all~Ly~~Tgd~-~~L~~A~~L~~~~~~~F~D~~~Gg~f~ 511 (691)
.+ +|+|+++|.++.... ++ ......+.+.++.+|.|++.||++|+++ .||+.|++|++.+..+|+++.+|-+++
T Consensus 188 ~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~~~~~~gil~e 267 (370)
T PF03663_consen 188 RDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINHFFDNGDGILTE 267 (370)
T ss_dssp HH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHEETT--EE--
T ss_pred hcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhCCCCCeeeec
Confidence 99 999887787776542 22 2345678899999999999999999877 999999999999999988765444444
Q ss_pred CCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 005551 512 TTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 567 (691)
Q Consensus 512 ~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~ 567 (691)
..-+. ....++-.+.-.++.+..|..|..+.... .+.|.+..++-.++
T Consensus 268 ~~ce~-------~~~~~~d~~~Fkgi~~r~L~~l~~~~~~~-~~~~~~~l~~~a~~ 315 (370)
T PF03663_consen 268 EACEP-------SGTCDGDQPLFKGIFARYLADLAQVAPDT-ADTYRDFLRKNADA 315 (370)
T ss_dssp ---------------SSSGGGGHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHH
T ss_pred ccccc-------CcCcCCccHHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHHHHH
Confidence 31110 11123445788999999999999998521 13444444433333
No 11
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-11 Score=140.50 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=128.9
Q ss_pred CCC-chhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeeech
Q 005551 218 PHF-EKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTS 295 (691)
Q Consensus 218 PHf-EKmLyd-nA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~DADs~~~~~~~~~~EG~yY~wt~ 295 (691)
|+- +|+|-| |++||.+++.|+++++++.|.++|+++.+||.+.|+.. .+.+. |
T Consensus 402 P~~Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~~~------------------~----- 456 (667)
T COG1331 402 PSRDDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLLRR------------------Y----- 456 (667)
T ss_pred CCCCcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chhee------------------e-----
Confidence 444 477777 99999999999999999999999999999999999764 33321 0
Q ss_pred HHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhh
Q 005551 296 KEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRS 375 (691)
Q Consensus 296 ~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~ 375 (691)
++|..
T Consensus 457 -------------------------------------~~G~a-------------------------------------- 461 (667)
T COG1331 457 -------------------------------------RGGEA-------------------------------------- 461 (667)
T ss_pred -------------------------------------ecCcc--------------------------------------
Confidence 11110
Q ss_pred cCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC
Q 005551 376 KRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN 455 (691)
Q Consensus 376 ~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~ 455 (691)
-....++|+ +++|+||..+|++++| .+||+.|+++++-++.+|||++ |+||.+..+
T Consensus 462 -~~~g~leDY------A~~i~gll~lye~t~d----------------~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~ 517 (667)
T COG1331 462 -AVAGLLEDY------AFLILGLLALYEATGD----------------LAYLEKAIELADEAIADFWDDE-GGFYDTPSD 517 (667)
T ss_pred -cccccchhH------HHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHHhcCCC-CCcccCCCc
Confidence 022356677 9999999999999998 7999999999999999999987 567765433
Q ss_pred CC--------CCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q 005551 456 GP--------SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 501 (691)
Q Consensus 456 g~--------~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F 501 (691)
++ .....+.+.+|.+|.+|+.|..+||+.+|.+.|.++.+.+..+.
T Consensus 518 ~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~ 571 (667)
T COG1331 518 SEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGLA 571 (667)
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 32 22357888999999999999999999999999999988875554
No 12
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.12 E-value=2.7e-09 Score=117.37 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEEEecC-CCCCCCCCcccHH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQHSFRN-GPSKAPGFLDDYA 468 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~--g~l~~~~~~-g~~~~~~~l~DyA 468 (691)
+.++.|+.+||+++++.+ ...++||+.|+++++++. ..||.+. |++++.-.+ ......+-.--.+
T Consensus 91 aw~~la~l~aye~t~~~~-----------~~~~~yL~~A~~i~~~~~-~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~ 158 (370)
T PF03663_consen 91 AWWALALLRAYELTGDQP-----------SDNPKYLDLAKEIFDFLI-SGWDDTSCGGGIWWSIDDTNSGYDYKNAISNG 158 (370)
T ss_dssp HHHHHHHHHHHHHH--H----------------HHHHHHHHHHHHHH-HTB-SGG-GS-BEEET----TEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHhhCCCc-----------chHHHHHHHHHHHHHHHH-HhcCCccCCCCccccccccCCCCCcccccchH
Confidence 889999999999999821 001299999999999999 7788663 778775211 0111112223446
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-hcccccCCccccCCCCCC--ccccccccCCCCCCCChHHHHHHHHHHH
Q 005551 469 FLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLDREGGGYFNTTGEDP--SVLLRVKEDHDGAEPSGNSVSVINLVRL 545 (691)
Q Consensus 469 ~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~-~F~D~~~Gg~f~~~~~~~--~l~~r~~~~~D~a~PS~nsv~a~~LlrL 545 (691)
-++...+.||++|+++.||++|+++.+.+.+ .++|+++|.+++.-.... .-+ ....-.--.++++.++..|
T Consensus 159 ~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~------~~~~~TYNqG~~l~a~~~L 232 (370)
T PF03663_consen 159 PAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNI------NKTKWTYNQGVFLGAAAYL 232 (370)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-------TT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcC------CCceechHHHHHHHHHHHH
Confidence 7788899999999999999999999999999 999988888887542111 111 1112223456899999999
Q ss_pred HHHhCCCCch-HHHHHHHHHHHHHHHH
Q 005551 546 ASIVAGSKSD-YYRQNAEHSLAVFETR 571 (691)
Q Consensus 546 ~~lt~~~~~~-~y~~~A~~~l~~~~~~ 571 (691)
+.+|++ + .|++.|++++++....
T Consensus 233 y~~T~~---~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 233 YNATND---EQTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHH-----H-HHHHHHHHHHHHHHHH
T ss_pred HHhcCC---ccHHHHHHHHHHHHHHHH
Confidence 999975 4 8999999999987544
No 13
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=98.96 E-value=5e-09 Score=114.63 Aligned_cols=337 Identities=17% Similarity=0.211 Sum_probs=205.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeec-cccCCCCCCCCccHHHHH-------HHHHHHHH-hcHHHHH
Q 005551 28 ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTIL-------RKVKDAWD-KKRDMLA 98 (691)
Q Consensus 28 erPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~g-TY~P~~~~~g~~gf~~~L-------~~i~~~w~-~~~~~~~ 98 (691)
+-||.-+.-+.-+|.| +.||-==+| ++| .=......|--|-|-.+| ..-++.++ ++.+...
T Consensus 289 k~~d~~~Mvl~TL~~m-anGGihDHI---------g~GFhRYsv~~~WHvpHFEKMLYDQ~QL~~aysdafklT~de~y~ 358 (786)
T KOG2244|consen 289 KADDEKSMVLFTLQGM-ANGGIHDHI---------GGGFHRYSVDECWHVPHFEKMLYDQGQLANAYSDAFKLTKDEMYS 358 (786)
T ss_pred cCcHHHHHHHHHHHHH-hcCCccccc---------cCceeeccccccccchhHHHHHhhHHHHHHHHHhhhhcchhHHHH
Confidence 4455555555566666 445533222 222 112334446666776554 44555555 4455567
Q ss_pred HHHHHHHHHHHHHhhcccC-------CCCCCCC------------CCHHHHHH-----------HHHHHHhcccccCCCC
Q 005551 99 QSGAFAIEQLSEALSASAS-------SNKLPDE------------LPQNALRL-----------CAEQLSKSYDSRFGGF 148 (691)
Q Consensus 99 ~~a~~~~~~l~~~~~~~~~-------~~~~~~~------------~~~~~~~~-----------~~~~l~~~~D~~~GGf 148 (691)
..|+.|.+.|++.++.+.. +.++|.. ...+.+++ .++-++..|+-.--|=
T Consensus 359 ~va~~I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~~i~p~~~fdl~a~hygvk~sGn 438 (786)
T KOG2244|consen 359 YVARDILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGENAIGPASLFDLFAEHYGVKKSGN 438 (786)
T ss_pred HHHHHHHHHHHHhccCCCCCcccccccCCCcccccccccccceEEeeHHHHHHHhCCCCCCcchHHHHHHHHcCCCCCCC
Confidence 7889999999886553221 1111110 01111111 2344555565554442
Q ss_pred CCCCCCCChhHH--HHHH-HhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCC-chhH
Q 005551 149 GSAPKFPRPVEI--QMML-YHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHF-EKML 224 (691)
Q Consensus 149 g~apKFP~~~~l--~~Ll-~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHf-EKmL 224 (691)
-++..=|+...- +.|. ++....-...-....++.++.+..+.+.+.. ++++ -.-||. .||+
T Consensus 439 vs~ssDPhgel~gkNVL~vr~s~e~taanf~lsve~~kkll~e~~e~L~~--aR~k-------------RPkPHLDsKii 503 (786)
T KOG2244|consen 439 VSSSSDPHGELAGKNVLIVRNSTEATAANFSLSVEKYKKLLGECREKLFD--ARLK-------------RPKPHLDSKII 503 (786)
T ss_pred CCCCCCCcccccCceEEEEecchHhhHhhccccHHHHHHHHHHHHHHHHH--Hhhc-------------CCCCCccchhe
Confidence 222233332100 0010 0000000000001235666677777777655 4433 345998 5999
Q ss_pred HH-HHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHhccCCC-CceeeeccCCcccccCcccccCCceeeechHHHHHH
Q 005551 225 YD-QGQLANVYLDAFSLTKD-VFYSYICRDILDYLRRDMIGPG-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDI 301 (691)
Q Consensus 225 yd-nA~ll~~ya~Ay~~tg~-~~y~~~A~~~~~~l~~~m~~~~-Ggfysa~DADs~~~~~~~~~~EG~yY~wt~~Ei~~~ 301 (691)
.. |+++|..|+.|+++++. +.|.+.|...++|+.++|.++. +.|... .-|
T Consensus 504 ~sWnGLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~-----------------scY---------- 556 (786)
T KOG2244|consen 504 VSWNGLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRG-----------------SCY---------- 556 (786)
T ss_pred eeccchhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeec-----------------ccc----------
Confidence 98 99999999999999875 4999999999999999998765 323220 000
Q ss_pred hhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 005551 302 LGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPH 381 (691)
Q Consensus 302 l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R~~P~ 381 (691)
+ .+.|. .+..| |.-+.+.|
T Consensus 557 ------------~-ga~g~------------ve~~n------------------------------------~~~~~~~F 575 (786)
T KOG2244|consen 557 ------------D-GASGR------------VEHSN------------------------------------RPSKAPAF 575 (786)
T ss_pred ------------c-CCCcc------------eeccC------------------------------------Cccccchh
Confidence 0 01111 12111 12234569
Q ss_pred CCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC
Q 005551 382 LDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP 461 (691)
Q Consensus 382 ~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~ 461 (691)
+||+ +++|.+|...|...++ .+||++|+++.+--...||| +|++|.+-.++.....
T Consensus 576 ldDY------AFlI~gLLDlYea~~~----------------~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~v 631 (786)
T KOG2244|consen 576 LDDY------AFLISGLLDLYEAGGG----------------IEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSV 631 (786)
T ss_pred hhhH------HHHHHHHHHHHHccCc----------------hHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcce
Confidence 9999 9999999999999987 68999999999999999998 6778777655544333
Q ss_pred CCcccH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q 005551 462 GFLDDY--------AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 501 (691)
Q Consensus 462 ~~l~Dy--------A~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F 501 (691)
+.-+|+ +..+..|+.|+.+++.+.|+++|.+|+..+.++.
T Consensus 632 RlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl~ka~~ll~~fseRl 679 (786)
T KOG2244|consen 632 RLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYLNKAHRLLAVFSERL 679 (786)
T ss_pred eeccccCCCCCCccchhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 444444 6788999999999999999999999999887776
No 14
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.93 E-value=3e-08 Score=106.22 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=124.1
Q ss_pred chhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCc
Q 005551 385 KVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFL 464 (691)
Q Consensus 385 kilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l 464 (691)
-++....| ++.+|...++. ++ ++|++.|+++++++.++..+.+ ..+.+.++.....++.
T Consensus 80 dl~~G~aG-~~~~ll~l~~~-~~----------------~~~l~~a~~~~~~l~~~~~~~~---~~~~~~~~~~~~~G~~ 138 (321)
T cd04791 80 DLASGLAG-IGLALLYFART-GD----------------PALLEAAAKIAELLAEALERGD---PALLWPDFDRVDHGLL 138 (321)
T ss_pred ccccchHH-HHHHHHHHHhc-CC----------------hHHHHHHHHHHHHHHHHhhccc---cccccccCCCCCCccc
Confidence 34555555 45567788887 77 8999999999999998876532 2234444555567999
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHH
Q 005551 465 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 544 (691)
Q Consensus 465 ~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~Llr 544 (691)
+++|-++.+|+.+|++|+|++|++.|+++.+...++|.+. .++++++...+. .....++|++-++.+|++
T Consensus 139 hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~-~~g~~~~~~~~~---------~~~~wchG~aGi~~~l~~ 208 (321)
T cd04791 139 HGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVD-DGGLLQVDEGAR---------LLPYLCSGSAGLGLLMLR 208 (321)
T ss_pred cCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccC-CCCceEcCCCCc---------cCcccCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999765 455555432211 123579999999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 005551 545 LASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 577 (691)
Q Consensus 545 L~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~ 577 (691)
++.++++ ++|++.|+++++.+......+|.
T Consensus 209 l~~~~~d---~~~~~~a~~~~~~~~~~~~~~~~ 238 (321)
T cd04791 209 LEAITGD---KRWRDEADGIAHAALSSCYANPG 238 (321)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHhhhhccCcc
Confidence 9999985 78999999999998876655554
No 15
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=98.80 E-value=2.8e-07 Score=100.02 Aligned_cols=153 Identities=21% Similarity=0.309 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCCCCCC--CcccHH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPSKAPG--FLDDYA 468 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~-~g~~~~~~--~l~DyA 468 (691)
.+.+..|++++..+|| ++|++.|.+.+....++++|+++|.++|.+. +|...... ..=.++
T Consensus 127 ~M~~p~l~~~~~~tgd----------------~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~g 190 (336)
T PF07470_consen 127 YMNLPFLAWAGKLTGD----------------PKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNG 190 (336)
T ss_dssp HHHHHHHHHHHHHHTG----------------HHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHH
T ss_pred cccHHHHHHHHHHHCC----------------cHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhh
Confidence 3567889999999998 8999999999999999999999999999864 34332222 445789
Q ss_pred HHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 005551 469 FLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 543 (691)
Q Consensus 469 ~li~all~Ly~~Tgd-----~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~Ll 543 (691)
|.+.|++++|+.+.+ +.+++.++++++.+. .+.+ ++|.++....+ +. . ......|+.++++..|+
T Consensus 191 W~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~-~~q~-~~G~w~~~~~~-~~-~------~~~~etSatA~~a~~l~ 260 (336)
T PF07470_consen 191 WAIYGLAEVLEYLPEDHPERDELLEIAKKLADALA-RYQD-EDGLWYQDLDD-PD-P------GNYRETSATAMFAYGLL 260 (336)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-TTST-TTSBEBSBTTT-TT-T------TS-BEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH-hcCC-CCCCcceecCC-CC-C------CCcccHHHHHHHHHHHH
Confidence 999999999999855 678888888887754 4555 45655443322 11 0 11234789999999998
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005551 544 RLASIVAGSKSDYYRQNAEHSLAVFETR 571 (691)
Q Consensus 544 rL~~lt~~~~~~~y~~~A~~~l~~~~~~ 571 (691)
+.-.. |-.+.+.|++.|++.++.+...
T Consensus 261 ~gi~~-g~~d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 261 RGIRL-GLLDPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHHHT-TSSTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHc-CCCccHHHHHHHHHHHHHHHhC
Confidence 73222 2222478999999999998766
No 16
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=2.7e-06 Score=91.90 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=114.3
Q ss_pred CcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeE-EEEecCCCCCCC
Q 005551 383 DDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRL-QHSFRNGPSKAP 461 (691)
Q Consensus 383 Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l-~~~~~~g~~~~~ 461 (691)
|..-=..-.++++-|++.++.+.+ ++..++-..+.+.+.+++++.+++.. +...+++.. +
T Consensus 110 Dat~d~Y~haFallA~A~~a~a~~-----------------~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~--p 170 (388)
T COG2942 110 DATKDLYGHAFALLAAAHAATAGP-----------------PRADELLDEALDVLERRFWREEHPLGGFEEDNPGSA--P 170 (388)
T ss_pred cccHhHHHHHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCC--c
Confidence 333333446888889999877654 56677777788888889998654321 111223322 3
Q ss_pred CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCc---cccCCCCCCccccccccCCCCCCCChHHHH
Q 005551 462 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVS 538 (691)
Q Consensus 462 ~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg---~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~ 538 (691)
--.+.++++.+|+|..|++|++..|++.|.+|++.+..+|.|.++|. +|+..++ +....|. -+.+|.+...+
T Consensus 171 l~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~-p~~~frg----~~~ePGH~fEW 245 (388)
T COG2942 171 LGSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWN-PAHGFRG----RGIEPGHQFEW 245 (388)
T ss_pred cCCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCC-cCCCccc----CCCCCchHHHH
Confidence 35678899999999999999999999999999999999999999885 6665542 1111221 25689999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 005551 539 VINLVRLASIVAGSKSDYYRQNAEHSLAV 567 (691)
Q Consensus 539 a~~LlrL~~lt~~~~~~~y~~~A~~~l~~ 567 (691)
++.|++++.+.+. ......|+.++..
T Consensus 246 ~~Lll~~a~~~~~---~~l~~~A~~lf~~ 271 (388)
T COG2942 246 AWLLLDIARRRGR---AWLIEAARRLFDI 271 (388)
T ss_pred HHHHHHHHHHhch---hHHHHHHHHHHHH
Confidence 9999999999885 4555666665554
No 17
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.30 E-value=6e-05 Score=80.77 Aligned_cols=133 Identities=19% Similarity=0.085 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 471 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li 471 (691)
+-++++|++++++++| ++|++.|+++.+++.+++++.++| ++.+ .++.....++....+=++
T Consensus 142 aGi~~~L~~l~~~t~d----------------~~~l~~A~~~~~~~~~~~~~~~~g-~~~~-~~~~~~~~~wchG~aGi~ 203 (321)
T cd04791 142 AGIALFLLRLYKATGD----------------SRYLELAEEALDKELARAVVDDGG-LLQV-DEGARLLPYLCSGSAGLG 203 (321)
T ss_pred HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHhhccCCCC-ceEc-CCCCccCcccCCCcHHHH
Confidence 6688899999999998 899999999999999998765444 4332 333334457888889999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005551 472 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 551 (691)
Q Consensus 472 ~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~ 551 (691)
.+++.+|+.|+|++|++.|+++.+.+...++. +-+ .-.|.+=.+..|+.++..+++
T Consensus 204 ~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~~--~~~----------------------lchG~~G~~~~l~~~~~~~~~ 259 (321)
T cd04791 204 LLMLRLEAITGDKRWRDEADGIAHAALSSCYA--NPG----------------------LFSGTAGLGAHLNDLAAEGDN 259 (321)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcc--Ccc----------------------ccCCcHhHHHHHHhhcccccC
Confidence 99999999999999999999999888766522 100 112333345566777888875
Q ss_pred CCchHHHHHHHHHHHHHH
Q 005551 552 SKSDYYRQNAEHSLAVFE 569 (691)
Q Consensus 552 ~~~~~y~~~A~~~l~~~~ 569 (691)
+.|++.+.++.+.+.
T Consensus 260 ---~~~~~~~~~~~~~~~ 274 (321)
T cd04791 260 ---ALYKAAAERLALYLI 274 (321)
T ss_pred ---hHHHHHHHHHHHHhc
Confidence 678888887766654
No 18
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.23 E-value=0.00012 Score=84.32 Aligned_cols=272 Identities=18% Similarity=0.201 Sum_probs=155.7
Q ss_pred cccccCCCCCC-CC--CCCCh---hHHHHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCc----EEEE
Q 005551 140 SYDSRFGGFGS-AP--KFPRP---VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG----FHRY 209 (691)
Q Consensus 140 ~~D~~~GGfg~-ap--KFP~~---~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GG----F~RY 209 (691)
.+.+.+|||.+ .| .|--. ..|.-+...+..++ +++.++.+...++.+.. -.+ ..| |+.-
T Consensus 40 ~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~-------D~~l~~~~d~~V~~l~~--~Q~--~dGYl~~~~~~ 108 (520)
T PF07944_consen 40 NFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTG-------DPELKAKADEIVDELAA--AQQ--PDGYLGTYPEE 108 (520)
T ss_pred CccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHH--hcc--CCceecccccc
Confidence 44456788762 12 22222 33444444444332 46777777777777765 222 223 2221
Q ss_pred ---EcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCccccc
Q 005551 210 ---SVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKK 286 (691)
Q Consensus 210 ---svD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~DADs~~~~~~~~~~ 286 (691)
..+..|.. ---.+|...-|+.+...+|+.||++..+++|.+.++|+.+.+..-+
T Consensus 109 ~~~~~~~~w~~--~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~--------------------- 165 (520)
T PF07944_consen 109 RNFNPDDRWAP--DMHELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLG--------------------- 165 (520)
T ss_pred cccccccCCCC--CccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCC---------------------
Confidence 12334543 2234999999999999999999999999999999999955432100
Q ss_pred CCceeeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHH
Q 005551 287 EGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGEC 366 (691)
Q Consensus 287 EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~ 366 (691)
.+. ++..
T Consensus 166 --------~~~-------------------------------------~~~~---------------------------- 172 (520)
T PF07944_consen 166 --------PEP-------------------------------------GQKM---------------------------- 172 (520)
T ss_pred --------HHH-------------------------------------hhcc----------------------------
Confidence 000 0000
Q ss_pred HHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC
Q 005551 367 RRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT 446 (691)
Q Consensus 367 ~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~ 446 (691)
..+. .+-|..+|+++|+++|| ++||+.|+...+ ...+++.
T Consensus 173 -------------------~~~~-~~~i~~~l~~LY~~Tgd----------------~~yL~lA~~f~~---~~~~~~~- 212 (520)
T PF07944_consen 173 -------------------GYPE-HGGINEALVRLYEITGD----------------ERYLDLAEYFVD---QRGFDPY- 212 (520)
T ss_pred -------------------cccc-cchHHHHHHHHHHHhCC----------------HHHHHHHHHHHH---HhCCCCC-
Confidence 0001 13455889999999999 899999987664 3343330
Q ss_pred CeEEEEecCCCC-----CCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcccc
Q 005551 447 HRLQHSFRNGPS-----KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLL 521 (691)
Q Consensus 447 g~l~~~~~~g~~-----~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~ 521 (691)
+..+. .+..+ ...+..=-.+++..|..++|+.|||++|++.++.+++.+.++-.= -+||.-... ..+....
T Consensus 213 ~~~~~--~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y-~tGg~g~~~-~~E~f~~ 288 (520)
T PF07944_consen 213 DLAYG--QDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMY-ATGGIGSDH-EGEHFGP 288 (520)
T ss_pred chhhc--CccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCee-ccCCCcCCC-CCccCCC
Confidence 00110 01111 111222234678899999999999999999999999998765221 245443321 0011110
Q ss_pred c--cccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 005551 522 R--VKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSL 565 (691)
Q Consensus 522 r--~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l 565 (691)
. ........+-.+.--+.....+|..+||+ ..|.+..|+++
T Consensus 289 ~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd---~~yaD~~Er~l 331 (520)
T PF07944_consen 289 PYDLPNRLAYAETCASVNMMKLARRLFRLTGD---ARYADYYERAL 331 (520)
T ss_pred CCCCCcCCCCccccHHHHHHHHHHHHHhcCCC---chHHHHHHHHH
Confidence 0 00111123444444455566777778885 67888887655
No 19
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=98.18 E-value=0.00034 Score=74.36 Aligned_cols=271 Identities=17% Similarity=0.158 Sum_probs=168.8
Q ss_pred HHhcccccCCCCCCCCCCCChhHHHHHHHhHhhhcccCCCCCcHHHHHHHHHHH-HHHHhCCCcccCCCcEEEEEcCCCC
Q 005551 137 LSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTL-QCMAKGGIHDHVGGGFHRYSVDERW 215 (691)
Q Consensus 137 l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL-~~m~~GGi~D~v~GGF~RYsvD~~W 215 (691)
+.+++....|=....=-+|+...|.=+.+.+..++ +++.++.+.... ..|-.| ||-+|++|.-
T Consensus 19 ~~~~~~~r~~~~~~~Wdwe~GV~lyGv~~~~eAT~-------d~~yl~~l~~~~d~~i~~~--------g~~~~~id~i- 82 (357)
T COG4225 19 MIDRIIARTGPTKDRWDWEQGVFLYGVARAYEATG-------DAEYLDYLKTWFDEQIDEG--------GLPPRNIDHI- 82 (357)
T ss_pred HHHHHHHhhCCCCccccccccchHHHHHHHHHHcC-------cHHHHHHHHHHHHhhhccC--------CCCccchhhh-
Confidence 33344433332223344666666666666666554 366676655544 555553 4666665531
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeeech
Q 005551 216 HVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTS 295 (691)
Q Consensus 216 ~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~DADs~~~~~~~~~~EG~yY~wt~ 295 (691)
+.-..+.-.|..|++|.|+..|.+..+|+..+++..+|||.+-.
T Consensus 83 -------------~~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~----------------------- 126 (357)
T COG4225 83 -------------AAGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKV----------------------- 126 (357)
T ss_pred -------------ccCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCcccccc-----------------------
Confidence 22223456788999999999999999999999987788885410
Q ss_pred HHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhh
Q 005551 296 KEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRS 375 (691)
Q Consensus 296 ~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~ 375 (691)
++ |+++
T Consensus 127 -----------------------~~-----------------------------------p~Q~---------------- 132 (357)
T COG4225 127 -----------------------KY-----------------------------------PHQM---------------- 132 (357)
T ss_pred -----------------------Cc-----------------------------------hhHh----------------
Confidence 01 0011
Q ss_pred cCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-
Q 005551 376 KRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR- 454 (691)
Q Consensus 376 ~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~- 454 (691)
-+|.- -|...-+++.++++++ ++|++.+..-..--.+++.||++|.+||.|.
T Consensus 133 -----W~DtL------~Ma~~F~ak~g~~~~~----------------~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~ 185 (357)
T COG4225 133 -----WLDTL------YMAGLFLAKYGQVTGR----------------PEYFDEALYQFSLHEKYLRDPETGLYYHGWDE 185 (357)
T ss_pred -----hhcch------hhhhHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHHccCCCcCceEEeecc
Confidence 01221 2445568899999998 8999999999988899999999999999975
Q ss_pred CCC----CCCCC---Ccc-cHHHHHHHHHHHHHHcCCh--H---HHHHHHHHHHHHHHhcccccCCccccCCCCCCcccc
Q 005551 455 NGP----SKAPG---FLD-DYAFLISGLLDLYEFGSGT--K---WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLL 521 (691)
Q Consensus 455 ~g~----~~~~~---~l~-DyA~li~all~Ly~~Tgd~--~---~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~ 521 (691)
+|+ ....| |+- ..+|++.++.++.+.-.+. . +.+.-..+.+.+.. +-| ++|-|+..- +++
T Consensus 186 ~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r-~Qd-e~GlW~tiL-Dd~---- 258 (357)
T COG4225 186 DGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIR-YQD-ESGLWHTIL-DDG---- 258 (357)
T ss_pred CCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH-hhc-cccchhhhh-ccC----
Confidence 331 11112 222 4578888888888876543 2 33334444444433 335 566555432 221
Q ss_pred ccccCCCCCCCChHHHHHHHHHH---HHHHhCCCCchHHHHHHHHHHHHHHHHHHhh
Q 005551 522 RVKEDHDGAEPSGNSVSVINLVR---LASIVAGSKSDYYRQNAEHSLAVFETRLKDM 575 (691)
Q Consensus 522 r~~~~~D~a~PS~nsv~a~~Llr---L~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~ 575 (691)
|+ .-..+-|+.+..|-+|++ ++-+. ++|...+++.++.+...+...
T Consensus 259 ~~---~sy~EsSaSa~faYallkgi~~G~l~-----~~~~~~~~kA~~aLl~~i~~~ 307 (357)
T COG4225 259 RP---GSYLESSASAGFAYALLKGINLGILD-----PEYAPVAEKALDALLGHIDEE 307 (357)
T ss_pred CC---CCchhhhHHHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHHHHhhcccc
Confidence 11 123567888888888887 55442 457788888888877666543
No 20
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.99 E-value=0.00043 Score=75.14 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=97.4
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHH-HHHHHHHH
Q 005551 399 ARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF-LISGLLDL 477 (691)
Q Consensus 399 a~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~-li~all~L 477 (691)
+.+++.++| ++|++.+.++++++.....+...|++.| ......-.+-|-.+ .+.-|+.+
T Consensus 77 ~~~y~~t~d----------------~~y~~~~~~~a~~~l~~~~~~~~G~~~~----~~~~~~~~wiD~~~M~~p~l~~~ 136 (336)
T PF07470_consen 77 LDLYERTGD----------------EKYKDAAIQAADWLLARRPRTSDGGFWH----NRPYPNQVWIDGMYMNLPFLAWA 136 (336)
T ss_dssp HHHHHHH-T----------------HHHHHHHHHHHHHHHHTSCBECTGCBEC----TTTSTTEEETTHHHHHHHHHHHH
T ss_pred HHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCCCCCCcccc----CCCCCCceeeccccccHHHHHHH
Confidence 447888888 8999999999999988887755677876 11122233456554 67788889
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHH
Q 005551 478 YEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYY 557 (691)
Q Consensus 478 y~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y 557 (691)
+..|||++|++.|.+-+....++.+|+++|-|+-.-.... ..+..+..=--||+=++..|.++..++... ...
T Consensus 137 ~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~-----~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~--~~~ 209 (336)
T PF07470_consen 137 GKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQG-----YADWSDSFWSRGNGWAIYGLAEVLEYLPED--HPE 209 (336)
T ss_dssp HHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTS-----SSTTST--BHHHHHHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCC-----CcCcccccCcchhhHHHHHHHHHHHHhcch--hhh
Confidence 9999999999999999999999999998887654221110 000000000126777777888888887541 233
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 005551 558 RQNAEHSLAVFETRLKDM 575 (691)
Q Consensus 558 ~~~A~~~l~~~~~~i~~~ 575 (691)
+....++++.+...+.+.
T Consensus 210 ~~~~~~~~~~~~~~l~~~ 227 (336)
T PF07470_consen 210 RDELLEIAKKLADALARY 227 (336)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444455555555555543
No 21
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.92 E-value=8.1e-06 Score=74.50 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=55.0
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCC-CCcceee-ccccCCCCCCCCcc
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP-DLKPLMG-GTYFPPEDKYGRPG 78 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltP-d~~Pf~~-gTY~P~~~~~g~~g 78 (691)
|.+++|+||+|.+.||+|||.+++|.++ |+-.++ +... +-.|+|..+|++| +|+++.- ..|.+|+ .
T Consensus 35 ~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~~~----~~~~-~~~~~P~~~~i~~~~g~~l~~~~G~~~~~------~ 102 (114)
T cd02958 35 LNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQRF----LQSY-KVDKYPHIAIIDPRTGEVLKVWSGNITPE------D 102 (114)
T ss_pred HHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHHHH----HHHh-CccCCCeEEEEeCccCcEeEEEcCCCCHH------H
Confidence 6788999999999999999999999986 664432 2222 5678999999999 8998863 3445554 3
Q ss_pred HHHHHHHH
Q 005551 79 FKTILRKV 86 (691)
Q Consensus 79 f~~~L~~i 86 (691)
|.+.|+++
T Consensus 103 f~~~L~~~ 110 (114)
T cd02958 103 LLSQLIEF 110 (114)
T ss_pred HHHHHHHH
Confidence 55555543
No 22
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.69 E-value=5.9e-05 Score=70.70 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=41.8
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCC-CCHHHHHHHHHHHhcCCCCCCceEEeCCCCcce
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 62 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreer-Pdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf 62 (691)
|++++|+||+|++++|++||.|+||.|.. .... -.| .|-|..||++|+|++.
T Consensus 41 l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~---------~~g-~~vPtivFld~~g~vi 93 (130)
T cd02960 41 LKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS---------PDG-QYVPRIMFVDPSLTVR 93 (130)
T ss_pred HHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC---------ccC-cccCeEEEECCCCCCc
Confidence 67899999999999999999999997633 1111 134 5799999999999876
No 23
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=97.65 E-value=0.012 Score=62.98 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 471 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li 471 (691)
+=++.+|..+++.+++ +.+.+.+.++++++.+......++..+...........++....+=.+
T Consensus 102 aG~~~~ll~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~ 165 (343)
T cd04434 102 AGLLLALLLLYKTFGE----------------EIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGIL 165 (343)
T ss_pred HHHHHHHHHHHHhcCC----------------cCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHH
Confidence 3356777788888776 678999999999998877553333221111111223457888888899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005551 472 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 551 (691)
Q Consensus 472 ~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~ 551 (691)
.+|+.+++.+.++.+.+.++.+.......+ +..++.+........ ......--.|.+=.+..+++++.++++
T Consensus 166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~wChG~~Gi~~~l~~~~~~~~~ 237 (343)
T cd04434 166 LALLLLYKKTVDKSLEALIKALLKYERRLQ-DDSGGFWWPSRSNGG-------NRFLVAWCHGAPGILLALLLAYKALGD 237 (343)
T ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHcc-CCCCCCCCCCCCCCC-------ccccceecCCChhHHHHHHHHHHHcCc
Confidence 999999999988888888888887766655 443443332111100 111112234555567778889999885
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 005551 552 SKSDYYRQNAEHSLAVFETRLK 573 (691)
Q Consensus 552 ~~~~~y~~~A~~~l~~~~~~i~ 573 (691)
+.+.+.+++++........
T Consensus 238 ---~~~~~~~~~~~~~~~~~~~ 256 (343)
T cd04434 238 ---DKYDEAAEKALELAWKRGL 256 (343)
T ss_pred ---HHHHHHHHHHHHHHHHhhh
Confidence 6788888888777655543
No 24
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.64 E-value=0.0021 Score=64.11 Aligned_cols=144 Identities=18% Similarity=0.242 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-C-----CC--CCCC
Q 005551 391 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-G-----PS--KAPG 462 (691)
Q Consensus 391 Nal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~-g-----~~--~~~~ 462 (691)
+|.+|+.|++||.+++| ++|+++|+++++...-.. +.|++...+.+ + =+ ...-
T Consensus 32 QG~a~s~l~RAy~~t~d----------------~~Yl~aA~~al~~f~~~~---~~GG~~~~~~~~~~wyeEYp~~p~s~ 92 (189)
T PF06662_consen 32 QGQAISVLARAYQLTGD----------------EKYLDAAKKALNSFKVPV---EEGGVLATFKNKYPWYEEYPTTPPSY 92 (189)
T ss_pred HHHHHHHHHHHHHhHCC----------------HHHHHHHHHHHHHhcChH---hhCCeeEEecCCcEeEeecCCCCCCE
Confidence 47789999999999999 899999999998876433 23555444333 1 12 2235
Q ss_pred CcccHHHHHHHHHHHHHHcCChHHHHH---HHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHH
Q 005551 463 FLDDYAFLISGLLDLYEFGSGTKWLVW---AIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 539 (691)
Q Consensus 463 ~l~DyA~li~all~Ly~~Tgd~~~L~~---A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a 539 (691)
.++.+.+.+.||-+++..|++.+..+. ..+....++..| |...+.+|+...- . ..+. -.-+.+.=..+.+
T Consensus 93 VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~y-D~G~wS~Ydl~h~--~-~~~~---~~~a~~~YH~lHi 165 (189)
T PF06662_consen 93 VLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLY-DTGSWSRYDLRHF--T-LGNA---PNIARWDYHRLHI 165 (189)
T ss_pred EeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhcccc--c-cccC---cCcCcchHHHHHH
Confidence 789999999999999999998876544 444444454444 6533446663210 0 0000 0011233345788
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHH
Q 005551 540 INLVRLASIVAGSKSDYYRQNAEH 563 (691)
Q Consensus 540 ~~LlrL~~lt~~~~~~~y~~~A~~ 563 (691)
..|..|+.+|++ +.+++.|++
T Consensus 166 ~qL~~L~~it~d---~~f~~~a~r 186 (189)
T PF06662_consen 166 QQLKWLYSITGD---PIFKEYAER 186 (189)
T ss_pred HHHHHHHHhcCC---HHHHHHHHH
Confidence 899999999985 677777754
No 25
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=97.61 E-value=0.0057 Score=74.43 Aligned_cols=251 Identities=20% Similarity=0.272 Sum_probs=147.0
Q ss_pred cCCCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-----CCceeeeccCCcccccCccc
Q 005551 211 VDERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-----GGEIFSAEDADSAETEGATR 284 (691)
Q Consensus 211 vD~~W~vPHfEKmLyd-nA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~-----~Ggfysa~DADs~~~~~~~~ 284 (691)
.+..|.+-.-.=-||+ -|-++.+|+..|++|+++.|.+.|+++++.+...+... +-|+|+
T Consensus 476 ~~~~~~~~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~-------------- 541 (825)
T cd04792 476 DGDEWELSPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFS-------------- 541 (825)
T ss_pred CCCcEEEecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEe--------------
Confidence 3445765445557888 89999999999999999999999999999988766432 122332
Q ss_pred ccCCceeeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHH
Q 005551 285 KKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILG 364 (691)
Q Consensus 285 ~~EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~ 364 (691)
|.-|-.|+.. .+.+.+++ +++.+...
T Consensus 542 G~aGi~~~L~--~l~~~~~~----------------------------------------------------~~~~~~a~ 567 (825)
T cd04792 542 GLGGILYALT--HLGKLLKD----------------------------------------------------DRLLNLAK 567 (825)
T ss_pred chhHHHHHHH--HHHHHcCC----------------------------------------------------HHHHHHHH
Confidence 1222222111 11111110 11112222
Q ss_pred HHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcccc
Q 005551 365 ECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDE 444 (691)
Q Consensus 365 ~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~ 444 (691)
.+.+.+.+.-. ..+.. -++..+.| ++.+|..+++.+++ +.+++.|+++++++.+.....
T Consensus 568 ~~~~~l~~~~~--~~~~~--D~~~G~aG-ii~~Ll~l~~~~~~----------------~~~l~~a~~~~~~l~~~~~~~ 626 (825)
T cd04792 568 EILDLIDELIE--KDEKL--DFISGAAG-LILVLLSLYELFLS----------------ERFLDLALKCGDHLLENASNE 626 (825)
T ss_pred HHHHHHHHhhc--cccCC--CEeeecHH-HHHHHHHHHhccCC----------------hHHHHHHHHHHHHHHHhhhhc
Confidence 22222222111 11111 12333333 56778889998887 789999999999998765442
Q ss_pred CCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccc
Q 005551 445 QTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK 524 (691)
Q Consensus 445 ~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~ 524 (691)
+.+ .+ ..+.....++....+=.+.+|+.+|++|+|++|++.|.++.+.....|. +..+.|. .........
T Consensus 627 ~~~-~~---~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~-~~~~~w~--~~~~~~~~~--- 696 (825)
T cd04792 627 DGG-IG---PAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFS-EEGWNWP--RKDGNSFSA--- 696 (825)
T ss_pred cCC-cc---cccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcC-HhhcCCC--CcCcCCCCC---
Confidence 222 22 1222334588889998999999999999999999999999997766553 3333332 111000001
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHH
Q 005551 525 EDHDGAEPSGNSVSVINLVRLASI--VAGSKSDYYRQNAEHSLAVF 568 (691)
Q Consensus 525 ~~~D~a~PS~nsv~a~~LlrL~~l--t~~~~~~~y~~~A~~~l~~~ 568 (691)
.--.|.+=.+..+++++.+ +++ +.+.+.+++++...
T Consensus 697 -----~WChG~~GI~lal~~~~~~~~~~d---~~~~~~i~~~~~~~ 734 (825)
T cd04792 697 -----AWCHGAPGILLARLELLKFNDLDD---EELKEEIEIALKTT 734 (825)
T ss_pred -----cccCCcHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHH
Confidence 1122333345567777776 332 56666666666554
No 26
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.44 E-value=0.0018 Score=74.65 Aligned_cols=135 Identities=19% Similarity=0.087 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC----CCCCCC----
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP----SKAPGF---- 463 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~----~~~~~~---- 463 (691)
+-.++|++.++..++| +++.+.+.+..+.|.+.... +| ++..+.... .....-
T Consensus 63 g~wl~a~a~~~~~~~D----------------~~l~~~~d~~V~~l~~~Q~~--dG-Yl~~~~~~~~~~~~~~w~~~~he 123 (520)
T PF07944_consen 63 GKWLEAAAYAYAYTGD----------------PELKAKADEIVDELAAAQQP--DG-YLGTYPEERNFNPDDRWAPDMHE 123 (520)
T ss_pred HHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHhccC--Cc-eecccccccccccccCCCCCccc
Confidence 7889999999999998 78999999999999987753 45 555543322 111222
Q ss_pred cccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---hcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHH
Q 005551 464 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE---LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI 540 (691)
Q Consensus 464 l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~---~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~ 540 (691)
++....++.||++.|++||+++.|+.|.++++.+.+ .|-+ +.+. ..-.|.+ ..+..
T Consensus 124 ~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~-~~~~-------------------~~~~~~~-~~i~~ 182 (520)
T PF07944_consen 124 LYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGP-EPGQ-------------------KMGYPEH-GGINE 182 (520)
T ss_pred eehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCH-HHhh-------------------ccccccc-chHHH
Confidence 455678999999999999999999999999999933 3321 1100 0011222 34558
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 005551 541 NLVRLASIVAGSKSDYYRQNAEHSLAVFE 569 (691)
Q Consensus 541 ~LlrL~~lt~~~~~~~y~~~A~~~l~~~~ 569 (691)
.|.+|+++||+ ++|++.|+.++....
T Consensus 183 ~l~~LY~~Tgd---~~yL~lA~~f~~~~~ 208 (520)
T PF07944_consen 183 ALVRLYEITGD---ERYLDLAEYFVDQRG 208 (520)
T ss_pred HHHHHHHHhCC---HHHHHHHHHHHHHhC
Confidence 99999999996 789999988887543
No 27
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.031 Score=62.36 Aligned_cols=210 Identities=19% Similarity=0.191 Sum_probs=138.4
Q ss_pred HhcccccCCCCCCCCCCCChhHHHHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCC--CcEEEEE-cCCC
Q 005551 138 SKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG--GGFHRYS-VDER 214 (691)
Q Consensus 138 ~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~--GGF~RYs-vD~~ 214 (691)
+...|+.+||+-. .-|=-...-..|-..+...-. .+++...+-+..+.+.++. +.|..| ||+++=- -..+
T Consensus 48 l~~~d~~r~g~~~-q~f~dsdlgkwlea~A~~l~~----~~dp~Lekr~D~vi~~~a~--~QdedGYl~~~~q~~~pe~R 120 (589)
T COG3533 48 LPAKDPFRGGWET-QMFWDSDLGKWLEAAAYSLAN----KGDPELEKRIDEVVEELAR--AQDEDGYLGGWFQADFPEER 120 (589)
T ss_pred CCccCccccccee-eeeccccHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHH--hhccCCcccceeeccCchhh
Confidence 3466888899873 223222211122111111001 1357778888888888887 777765 4655422 2335
Q ss_pred CC---CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCcee
Q 005551 215 WH---VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFY 291 (691)
Q Consensus 215 W~---vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~DADs~~~~~~~~~~EG~yY 291 (691)
|. .=|| ||.-+-|+.+...+|++||....++++.+-++|+.+.+ .|+- | .
T Consensus 121 w~nlr~~He---lY~aghLieg~va~~qaTGkr~lldV~~rlADhi~tvf-gp~~------~--------q--------- 173 (589)
T COG3533 121 WGNLRPNHE---LYCAGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVF-GPEE------D--------Q--------- 173 (589)
T ss_pred hhccccchH---HHHhHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhc-Cccc------c--------c---------
Confidence 63 2344 99999999999999999999999999999999998755 2110 0 0
Q ss_pred eechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005551 292 VWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 371 (691)
Q Consensus 292 ~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~ 371 (691)
..|.+
T Consensus 174 -------------------------~~g~~-------------------------------------------------- 178 (589)
T COG3533 174 -------------------------VPGYC-------------------------------------------------- 178 (589)
T ss_pred -------------------------ccccc--------------------------------------------------
Confidence 01111
Q ss_pred hhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE
Q 005551 372 DVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH 451 (691)
Q Consensus 372 ~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~ 451 (691)
..+-+-.||++.|+++|+ ++||+.|+...+ +...+| +.
T Consensus 179 ------------------gH~eielAl~~Ly~~Tg~----------------~rYL~LA~~Fi~---~rg~~P-----~~ 216 (589)
T COG3533 179 ------------------GHPEIELALAELYRLTGD----------------QRYLDLARRFIH---QRGVEP-----LA 216 (589)
T ss_pred ------------------CCCchhHHHHHHHHHhcC----------------hHHHHHHHHHHH---HhccCh-----hh
Confidence 112344588999999999 899999987653 333332 10
Q ss_pred EecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005551 452 SFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 500 (691)
Q Consensus 452 ~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~ 500 (691)
..|.-...++..-..+++.|+.+||+.+||+.+...+..|++.+.++
T Consensus 217 --~rg~e~~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k 263 (589)
T COG3533 217 --QRGDELEGGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTR 263 (589)
T ss_pred --cCchhhhhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 12221224666778899999999999999999999999999988766
No 28
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.26 E-value=0.00014 Score=62.28 Aligned_cols=48 Identities=35% Similarity=0.540 Sum_probs=39.6
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCC
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 57 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltP 57 (691)
|+++.|+||+|.+++|++||+|+||-+++...-++++ -|.|..+|++|
T Consensus 35 l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---------~~~P~~~~ldp 82 (82)
T PF13899_consen 35 LEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---------QGYPTFFFLDP 82 (82)
T ss_dssp HHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---------CSSSEEEEEET
T ss_pred HHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---------ccCCEEEEeCC
Confidence 6788999999999999999999999976655444443 24999999987
No 29
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.25 E-value=0.0068 Score=60.51 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005551 224 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 270 (691)
Q Consensus 224 LydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfys 270 (691)
-..|++.+.++++||++|+|+.|+++|+++++..... ..+||+-+
T Consensus 29 amaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~--~~~GG~~~ 73 (189)
T PF06662_consen 29 AMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVP--VEEGGVLA 73 (189)
T ss_pred HHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcCh--HhhCCeeE
Confidence 3469999999999999999999999999999987653 34688755
No 30
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=97.23 E-value=0.085 Score=58.29 Aligned_cols=143 Identities=8% Similarity=-0.075 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHh-hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe------c-----CCCCCCC
Q 005551 394 VISSFARASKIL-KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF------R-----NGPSKAP 461 (691)
Q Consensus 394 ~i~aLa~a~~~~-~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~------~-----~g~~~~~ 461 (691)
.+++|+.+++.. ++ +.+++.++++.+|+.+++.+...+.++... . .+.....
T Consensus 177 i~~~L~~~~~~~~~~----------------~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 240 (382)
T cd04793 177 PLALLALAKERGIRV----------------DGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRD 240 (382)
T ss_pred HHHHHHHHHHcCCCc----------------CChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCC
Confidence 468899898876 44 689999999999998877654333222211 0 0111224
Q ss_pred CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHH
Q 005551 462 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVIN 541 (691)
Q Consensus 462 ~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~ 541 (691)
++...-+=.+.+++.++++++|+.+.+.|.++.+.+...... .+ . ..+...-.|.+=.+..
T Consensus 241 ~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~---~--------------~~~~~lChG~~G~~~~ 301 (382)
T cd04793 241 AWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQ--LS---K--------------LISPTLCHGLAGLLFI 301 (382)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhh--hc---c--------------CCCCCcCccHHHHHHH
Confidence 555666677889999999999999999999988776543211 10 0 0011223455556788
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh
Q 005551 542 LVRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 574 (691)
Q Consensus 542 LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~ 574 (691)
|++++..|++ +++.+.|+.+++.......+
T Consensus 302 l~~~~~~~~~---~~~~~~a~~~~~~~l~~~~~ 331 (382)
T cd04793 302 FYLLYKDTNT---NEFKSALEYLLNQIISSYSE 331 (382)
T ss_pred HHHHHHHhCC---cHHHHHHHHHHHHHHHHhcc
Confidence 9999999986 67999998888887666543
No 31
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.23 E-value=0.0072 Score=64.53 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=101.8
Q ss_pred HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHH
Q 005551 398 FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDL 477 (691)
Q Consensus 398 La~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~L 477 (691)
|+-.++.++| ++|++.|+++++++..+. +.+.|+|.|... .+ .+-.+|.--....-++.+
T Consensus 88 L~~L~e~T~~----------------~~Yl~~a~~~a~~l~~~~-Rt~eG~f~H~~~--~p-~Q~W~DtL~Ma~~F~ak~ 147 (357)
T COG4225 88 LLPLYEQTGD----------------PRYLEAAIKLASWLVHEP-RTKEGGFQHKVK--YP-HQMWLDTLYMAGLFLAKY 147 (357)
T ss_pred eeehhhhhCC----------------HHHHHHHHHHHHHHhhCc-ccCCCccccccC--ch-hHhhhcchhhhhHHHHHH
Confidence 4455677888 899999999999999988 445688988533 11 112222223334456778
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCC-C--CChHHHHHHHHHHHHHHhCCCCc
Q 005551 478 YEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA-E--PSGNSVSVINLVRLASIVAGSKS 554 (691)
Q Consensus 478 y~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a-~--PS~nsv~a~~LlrL~~lt~~~~~ 554 (691)
-+.+++++|.+.+..-+....++.-|+++|-||-.=.++.. .++....-|- . --+|+-.+.+|-.+=.+.... +
T Consensus 148 g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~--~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~-~ 224 (357)
T COG4225 148 GQVTGRPEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGT--MPWANNESGEPAFWARGNGWYAMALADLLELLPED-H 224 (357)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCC--CccccccCCCceeeecccchHHHHHHHHHHhCCCC-C
Confidence 89999999999999999999999999999987732111111 1111111110 0 125665666666666666542 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005551 555 DYYRQNAEHSLAVFETRLKDMAMAVPLMCCAA 586 (691)
Q Consensus 555 ~~y~~~A~~~l~~~~~~i~~~p~~~~~~~~a~ 586 (691)
+ -+....++|+.....|.++-.....|...+
T Consensus 225 ~-~r~~l~~~l~d~v~al~r~Qde~GlW~tiL 255 (357)
T COG4225 225 P-DRRELLNVLRDLVDALIRYQDESGLWHTIL 255 (357)
T ss_pred c-hHHHHHHHHHHHHHHHHHhhccccchhhhh
Confidence 2 344555666666666666555444444333
No 32
>PLN02171 endoglucanase
Probab=97.12 E-value=0.018 Score=67.46 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCC---CCCCCcccH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPS---KAPGFLDDY 467 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~---~~~~~l~Dy 467 (691)
+-+..|||.|++++++- +..|. .++|+.|+++++|..++= | .+.. ...+.. ...++.|
T Consensus 179 ~e~AAAlAaaS~vfk~~--D~~YA--------~~lL~~Ak~ly~fA~~~~-----g-~y~~~~~~~~~~Y~s~s~y~D-- 240 (629)
T PLN02171 179 GETAAAMAAASIVFRRS--NPGYA--------NELLTHAKQLFDFADKYR-----G-KYDSSITVAQKYYRSVSGYGD-- 240 (629)
T ss_pred HHHHHHHHHHHHhcccc--CHHHH--------HHHHHHHHHHHHHHHhCC-----C-cccCCCcccCCccCCCCCccH--
Confidence 77889999999999861 11111 457999999999998752 1 1110 000110 0113333
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005551 468 AFLISGLLDLYEFGSGTKWLVWAIELQN 495 (691)
Q Consensus 468 A~li~all~Ly~~Tgd~~~L~~A~~L~~ 495 (691)
.+++|..+||.+|||..|++.+....+
T Consensus 241 -El~WAAawLy~ATgd~~Yl~~~~~~~~ 267 (629)
T PLN02171 241 -ELLWAAAWLYQATNNQYYLDYLGNNGD 267 (629)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 567899999999999999998876544
No 33
>PLN02340 endoglucanase
Probab=97.12 E-value=0.034 Score=64.92 Aligned_cols=187 Identities=19% Similarity=0.245 Sum_probs=110.7
Q ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHH---HHHcc-CChHHHHHHHHHHHHHHHhccCCCCceeeec-cCC
Q 005551 201 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DAD 275 (691)
Q Consensus 201 ~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~---Ay~~t-g~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~-DAD 275 (691)
.+-||+|-=-.--+..+| |-|.-+.|+|.|.+ ++... +-+..++.++=.++|+++ |..+.+.||.-. |.+
T Consensus 73 DlsGGwyDAGD~vKf~~p----~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk-~~~~~~~~~~qVGdg~ 147 (614)
T PLN02340 73 DLVGGYYDAGDHVKFGLP----MAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIK-AHTQPNVLWGQVGDGD 147 (614)
T ss_pred CCCCCceeCCCcceecch----hHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHH-hcCCCCeEEEEeCCCC
Confidence 578899952222344566 99999999999887 34433 358889999999999998 555566777643 333
Q ss_pred cccccCcccccCCceeeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCC
Q 005551 276 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 355 (691)
Q Consensus 276 s~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~ 355 (691)
.+ | ..|...|... .-+..|.|+
T Consensus 148 ~D------H------~~W~~PE~~~-------~~R~~y~i~--------------------------------------- 169 (614)
T PLN02340 148 SD------H------YCWERAEDMT-------TPRTAYKLD--------------------------------------- 169 (614)
T ss_pred cc------c------ccCCChhhcC-------CcCceeecC---------------------------------------
Confidence 21 1 1344221100 000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005551 356 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 435 (691)
Q Consensus 356 ~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~ 435 (691)
...|. |+--+-+..|||.|++++++. +..|. .++|+.|+++++
T Consensus 170 ---------------------~~~pg------Sd~a~e~AAAlAaas~vfk~~--D~~YA--------~~lL~~Ak~ly~ 212 (614)
T PLN02340 170 ---------------------QNHPG------SDLAGETAAALAAASKAFKPY--NSSYS--------DLLLVHAKQLFS 212 (614)
T ss_pred ---------------------CCCCc------cHHHHHHHHHHHHHHHhccCC--CHHHH--------HHHHHHHHHHHH
Confidence 01122 222377899999999999851 11111 467999999999
Q ss_pred HHHHhccccCCCeEEEEecCCCC--CCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005551 436 FIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQN 495 (691)
Q Consensus 436 ~l~~~~~d~~~g~l~~~~~~g~~--~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~ 495 (691)
|..++- |.+.-+...+.. ...++-| .+++|.+.||.+|||..|++.+.....
T Consensus 213 fA~~~~-----g~y~~s~~~a~~~Y~ss~~~D---El~WAAawLy~ATgd~~Yl~~~~~~~~ 266 (614)
T PLN02340 213 FADKFR-----GLYDDSIQNAKKFYTSSGYSD---ELLWAAAWLYRATGDEYYLKYVVDNAV 266 (614)
T ss_pred HHHhCC-----CCccCCCCccccCCCCCCcch---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 998742 211100011111 0123333 458889999999999999999887644
No 34
>PLN02345 endoglucanase
Probab=97.10 E-value=0.015 Score=65.91 Aligned_cols=183 Identities=15% Similarity=0.194 Sum_probs=106.2
Q ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHH---HHcc-CChHHHHHHHHHHHHHHHhccCCCCceeeecc-CC
Q 005551 201 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDA---FSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAED-AD 275 (691)
Q Consensus 201 ~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~A---y~~t-g~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~D-AD 275 (691)
.+.||+|-=-.-.+..+| |-|.-.+|.|.|.+- |... +-+..++.++=.++||++ |..++|+||.-.- .+
T Consensus 39 DlsGGwyDAGD~~Kf~~p----~a~t~t~L~w~~~e~~~~~~~~~~~~~~ldelkw~~Dyllk-~~~~~~~~y~qVg~~~ 113 (469)
T PLN02345 39 DLSKGMYDAGDHMKFGFP----MAFTATVLSWSILEYGDQMNAANQLDSAKDSLKWITDYLIN-AHPSENVLYIQVGDPK 113 (469)
T ss_pred cCCCCceeCCCCceeCch----hHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhHHHHHHHH-hcCCCCeEEEEecCCC
Confidence 577899952222344566 888888888877663 3333 347888999999999997 6666788887331 11
Q ss_pred cccccCcccccCCceeeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCC
Q 005551 276 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 355 (691)
Q Consensus 276 s~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~ 355 (691)
. . ...|...|... ..+.+..+
T Consensus 114 ~----------D--h~~W~~Pe~~~---------------------------------~~R~~~~~-------------- 134 (469)
T PLN02345 114 L----------D--HKCWERPETMD---------------------------------EKRPLTKI-------------- 134 (469)
T ss_pred C----------C--cccCCChhhcC---------------------------------CcceEEec--------------
Confidence 0 0 01133211000 01111110
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005551 356 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 435 (691)
Q Consensus 356 ~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~ 435 (691)
....|..| --+-+..|||.|++++++. +..|. .++|+.|+++.+
T Consensus 135 --------------------~~~~pgsd------~a~~~AAAlA~as~vfk~~--D~~YA--------~~lL~~Ak~ly~ 178 (469)
T PLN02345 135 --------------------NTSSPGSE------VAAETAAAMAAASLVFKSS--DSTYS--------DTLLKHAKQLFN 178 (469)
T ss_pred --------------------CCCCCCcH------HHHHHHHHHHHHHHHhccC--CHHHH--------HHHHHHHHHHHH
Confidence 00122322 2277889999999999862 01111 467999999999
Q ss_pred HHHHhccccCCCeEEEEecCCCC--CCCCCcccHHHHHHHHHHHHHHcCChHHHHHHH
Q 005551 436 FIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAI 491 (691)
Q Consensus 436 ~l~~~~~d~~~g~l~~~~~~g~~--~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~ 491 (691)
|..++- |.+..+..++.. ...++-++ +++|.+.||.+|||..|++.+.
T Consensus 179 fa~~~~-----g~y~~~~~~~~~~Y~s~~~~DE---l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 179 FADKYR-----GSYSESIPEVQDYYNSTGYGDE---LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHhCC-----CcccCCCCccCCCCCCcccccH---HHHHHHHHHHHhCCHHHHHHHH
Confidence 998752 111110000000 11233344 5788999999999999999875
No 35
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=97.01 E-value=0.0031 Score=71.10 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC---CCcc
Q 005551 389 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP---GFLD 465 (691)
Q Consensus 389 ~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~---~~l~ 465 (691)
+-.+.++.+||.|++++++- +..|. .++|+.|+++.+|..++--. +. ........ .-..
T Consensus 154 ~~~~~~AAalA~As~v~k~~--d~~~A--------~~~L~~A~~~~~~a~~~~~~-----~~---~~~~~~~~~~Y~~~~ 215 (444)
T PF00759_consen 154 DATAEFAAALAAASRVFKDF--DPAYA--------AQCLKAAKEAYAFAKKNPGV-----YS---DNPQPNGGGFYNSSG 215 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--THHHH--------HHHHHHHHHHHHHHHHSTTH-----GG---GTSTCTTTTTSHCS-
T ss_pred HHHHHHHHHHHHHHHhcccC--CHHHH--------HHHHHHHHHHHHHHHhCCCc-----cc---CCcccccCCcccCCC
Confidence 33578899999999999861 11111 57899999999999876421 10 11101000 1122
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 005551 466 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 497 (691)
Q Consensus 466 DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~ 497 (691)
..-.+++|.++||++||+.+|++.|.+....+
T Consensus 216 ~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 216 YEDELAWAAAELYRATGDESYLDYAKEYYDDL 247 (444)
T ss_dssp SHHHHHHHHHHHHHHHT-HHHHHHHHHHCCTS
T ss_pred cccHHHHHHHHHHHhcCcHHHHHHHHHhHHhh
Confidence 33357889999999999999999998766444
No 36
>PLN03009 cellulase
Probab=96.99 E-value=0.019 Score=65.63 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=48.7
Q ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHH---HHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 005551 201 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 271 (691)
Q Consensus 201 ~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~---Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa 271 (691)
.+-||+|-=-.-.+..+| |-|--.+|++.|.+ +|...+-+..++.++=.++||++ |..+.|+||.-
T Consensus 71 DlsGGwyDAGD~~Ky~~p----~a~s~~~L~w~~~~f~d~~~~~~~~diLdeikw~~D~llk-m~~~~~~~y~q 139 (495)
T PLN03009 71 DLTGGYYDAGDNVKFGFP----MAFTTTMLAWSVIEFGDLMPSSELRNSLVAIRWATDYLLK-TVSQPNRIFVQ 139 (495)
T ss_pred cCCCcceeCCCCceeccc----hHHHHHHHHHHHHHhHhhCCccccHHHHHHHHHHHHHHHH-cccCcCeEEEE
Confidence 466888842222344566 88888888888776 56566778899999999999998 66667888874
No 37
>PLN02909 Endoglucanase
Probab=96.97 E-value=0.047 Score=62.11 Aligned_cols=180 Identities=15% Similarity=0.183 Sum_probs=108.8
Q ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHH---HHHHccC-ChHHHHHHHHHHHHHHHhccCCCCceeeecc-CC
Q 005551 201 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYL---DAFSLTK-DVFYSYICRDILDYLRRDMIGPGGEIFSAED-AD 275 (691)
Q Consensus 201 ~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya---~Ay~~tg-~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~D-AD 275 (691)
.+.||+|-=-.-.+..+| |-|.-+.|+|.|. ++|..++ -|..++.++=.++||++ |..++|+||.-.- .+
T Consensus 77 DlsGGwyDAGD~~Kf~~p----~a~s~~~L~w~~~~y~~~~~~~g~~~d~ldeikw~~D~llk-~~~~~~~~y~qVg~~~ 151 (486)
T PLN02909 77 DLVGGYYDAGDNVKYGLP----MAFTVTTLAWSTLAYEKELRATGELENVRAAIRWGTDYFLK-AASRKNRLYVQVGDPN 151 (486)
T ss_pred CCCCCceeCCCCceeCCc----hHHHHHHHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHHH-hccCCCeEEEEeCCCC
Confidence 578999962233345567 9999888887654 4565544 48889999999999998 6667788887431 11
Q ss_pred cccccCcccccCCceeeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCC
Q 005551 276 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 355 (691)
Q Consensus 276 s~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~ 355 (691)
. .+ ..|..-|... .-+.+..+
T Consensus 152 ~----------Dh--~~W~~Pe~~~---------------------------------~~R~~~~i-------------- 172 (486)
T PLN02909 152 L----------DH--QCWVRPENMK---------------------------------TPRTVLEI-------------- 172 (486)
T ss_pred C----------Cc--ccCCChhhcc---------------------------------CCceeEec--------------
Confidence 1 00 0133211000 00111000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005551 356 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 435 (691)
Q Consensus 356 ~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~ 435 (691)
....|..| --+-+..|||.|++++++- +..|. .++|+.|+++.+
T Consensus 173 --------------------~~~~pgtd------~a~~~AAAlA~as~vfk~~--D~~yA--------~~lL~~Ak~~y~ 216 (486)
T PLN02909 173 --------------------DEKTPGTE------IAAETAAAMAASSMVFRHV--DHKYS--------RRLLNKAKLLFK 216 (486)
T ss_pred --------------------CCCCCCcH------HHHHHHHHHHHHHHhhccC--CHHHH--------HHHHHHHHHHHH
Confidence 01123322 2378899999999999861 11111 467999999999
Q ss_pred HHHHhccccCCCeEEEEecCCCCC---CCCCcccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 005551 436 FIRRHLYDEQTHRLQHSFRNGPSK---APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIE 492 (691)
Q Consensus 436 ~l~~~~~d~~~g~l~~~~~~g~~~---~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~ 492 (691)
|..++= |.+ . +..+. ..++.| .+++|..+||.+|||..|++.+..
T Consensus 217 fA~~~~-----g~y-~---~~~~~y~s~s~y~D---El~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 217 FAKAHK-----GTY-D---GECPFYCSYSGYND---ELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHHhCC-----CCc-C---CCCCccccCCCcch---HHHHHHHHHHHHhCCHHHHHHHHh
Confidence 998752 111 0 11111 123334 567888999999999999997764
No 38
>PLN00119 endoglucanase
Probab=96.91 E-value=0.035 Score=63.22 Aligned_cols=83 Identities=14% Similarity=0.058 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCCCcccHHHH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAFL 470 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~-~~g~~~~~~~l~DyA~l 470 (691)
+-+..|||.+++++++- +..|. .++|+.|+++.+|..++- | .+... ..+...-. -...+-.+
T Consensus 180 ~~~AAAlA~as~vfk~~--D~~yA--------~~lL~~Ak~~y~fA~~~~-----g-~y~~~~~~~~g~Y~-ss~~~DEl 242 (489)
T PLN00119 180 GETAAAMAAASIAFAPS--DPAYA--------SILIGHAKDLFEFAKAHP-----G-LYQNSIPNAGGFYA-SSGYEDEL 242 (489)
T ss_pred HHHHHHHHHHHHHcccC--CHHHH--------HHHHHHHHHHHHHHHhCC-----C-cccCCCCCCCCCCC-CCchhhHH
Confidence 77889999999999851 01111 467999999999998741 2 11110 01111000 01223467
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 005551 471 ISGLLDLYEFGSGTKWLVWAI 491 (691)
Q Consensus 471 i~all~Ly~~Tgd~~~L~~A~ 491 (691)
++|.+.||.+|||..|++.+.
T Consensus 243 ~WAAawLY~aTgd~~Yl~~~~ 263 (489)
T PLN00119 243 LWAAAWLHRATNDQTYLDYLT 263 (489)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 899999999999999998765
No 39
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=96.91 E-value=0.15 Score=57.11 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=43.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee----eccCCcccccC
Q 005551 213 ERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS----AEDADSAETEG 281 (691)
Q Consensus 213 ~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfys----a~DADs~~~~~ 281 (691)
.+|.+..| -.|--++.+++-.-.+|||+.|++.|.++.+|...++.++.|-||| ..|-|....+|
T Consensus 61 ~~~~iSNf----AsQQN~lR~L~~LS~lTgd~~Y~q~A~~~~~yfldh~~D~~GL~~WGGHrFi~L~tl~~eG 129 (557)
T PF06917_consen 61 RDAPISNF----ASQQNFLRTLVGLSNLTGDPKYQQRAQEIIRYFLDHFVDDSGLFYWGGHRFINLDTLQIEG 129 (557)
T ss_dssp -EEEEE-G----GG-HHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHSB-TTS-BS-STT-EEETTT--EE-
T ss_pred CccccccH----HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhccCCCcceeecCceeEecccCCccC
Confidence 34555433 3466788899999999999999999999999999999999988886 45555444434
No 40
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=96.87 E-value=0.092 Score=62.32 Aligned_cols=223 Identities=20% Similarity=0.221 Sum_probs=139.9
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCCcEEE----EEcC-CCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHH
Q 005551 179 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHR----YSVD-ERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRD 252 (691)
Q Consensus 179 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~R----YsvD-~~W~vPHfEKmLyd-nA~ll~~ya~Ay~~tg~~~y~~~A~~ 252 (691)
++....+|..--+.|...+|.-...+-..+ +..+ ..|.+--.---||| -|-++..|+-...+||+..|+++|.+
T Consensus 595 ~e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~ 674 (963)
T COG4403 595 NEYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIK 674 (963)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHH
Confidence 445556666656666666665444332222 2223 56776445557788 88888899999999999999999999
Q ss_pred HHHHHHHhccCCC-----CceeeeccCCcccccCcccccCCceee-echHHHHHHhhhhHHHHHHHhcccCCCCcCCCCC
Q 005551 253 ILDYLRRDMIGPG-----GEIFSAEDADSAETEGATRKKEGAFYV-WTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRM 326 (691)
Q Consensus 253 ~~~~l~~~m~~~~-----Ggfysa~DADs~~~~~~~~~~EG~yY~-wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~ 326 (691)
++.=+.+.+.... |||. |--|-||. |+ |.++.++
T Consensus 675 ~L~~~~~sv~~~~~~~~iga~~---------------G~~g~~yal~~---I~~~~~~---------------------- 714 (963)
T COG4403 675 ALQDSRKSVNNNLNPINIGAFT---------------GLSGYFYALWK---IYSVTRD---------------------- 714 (963)
T ss_pred HHHHHHHhhhhccCCccccccc---------------ccchhhhhhHH---HHHhccc----------------------
Confidence 9998888765422 3331 23344442 22 1111111
Q ss_pred CCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHH--HHHHHHHHHHH
Q 005551 327 SDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL--VISSFARASKI 404 (691)
Q Consensus 327 ~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal--~i~aLa~a~~~ 404 (691)
+.|. .+..+.+. ..+.+.+. . ..|- --||+ +|..|...|+.
T Consensus 715 ----------~~l~----------------~~~~~~i~-~le~~v~~--~-~~~d-------~i~Gl~g~i~~L~~iYk~ 757 (963)
T COG4403 715 ----------NYLI----------------QSAENSIR-HLEILVQK--S-KDPD-------FINGLAGVICVLVSIYKL 757 (963)
T ss_pred ----------HHHH----------------HHHHHHHH-HHHHHHhh--c-cCcc-------hhhccHHHHHHHHHHHhh
Confidence 1110 00111111 11122111 1 1121 12454 57789999998
Q ss_pred hhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHHcCCh
Q 005551 405 LKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGT 484 (691)
Q Consensus 405 ~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~ 484 (691)
+.+ |+.++.|..+.+.+.+.....+. .+....++...-+-.|.+|+.+|++|+++
T Consensus 758 ~~e----------------pk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gfshg~sgi~~tL~~ly~~T~e~ 812 (963)
T COG4403 758 TDE----------------PKFLELAISLGRILMEKIVGNDS---------SETVLLGFSHGASGIILTLLKLYEATGEE 812 (963)
T ss_pred ccc----------------hHHHHHHHHHHHHHHHHhhcccc---------ccceecccccchHHHHHHHHHHHHhcCcH
Confidence 766 89999999999999877654221 11234577788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 005551 485 KWLVWAIELQNTQDELFLD 503 (691)
Q Consensus 485 ~~L~~A~~L~~~~~~~F~D 503 (691)
.+++.+.++.-+-..+|-+
T Consensus 813 ~l~~~i~e~~~~Er~~f~~ 831 (963)
T COG4403 813 SLLKKIKELLSYERMKFSD 831 (963)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999887777755
No 41
>PLN02308 endoglucanase
Probab=96.85 E-value=0.047 Score=62.31 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CC---CCCCCcccH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PS---KAPGFLDDY 467 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g-~~---~~~~~l~Dy 467 (691)
+-++.|||.|++++++- +..|. .++|+.|+++.+|..++- |.+....... .+ ...++.|
T Consensus 175 ~~~AAAlA~as~vf~~~--D~~YA--------~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~~Y~~~s~~~D-- 237 (492)
T PLN02308 175 GETAAALAAASIVFRKR--DPAYS--------RLLLDRAVRVFAFADKYR-----GAYSSSLHAAVCPFYCDFNGYQD-- 237 (492)
T ss_pred HHHHHHHHHHHHhcccc--CHHHH--------HHHHHHHHHHHHHHHHcC-----CcccCCCCcccCCCcCCCCcccH--
Confidence 78899999999999841 11111 467999999999998752 2111000000 00 0012333
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 005551 468 AFLISGLLDLYEFGSGTKWLVWAIEL 493 (691)
Q Consensus 468 A~li~all~Ly~~Tgd~~~L~~A~~L 493 (691)
.+++|..+||.+|||..|++.+...
T Consensus 238 -El~WAAawLy~ATgd~~Yl~~~~~~ 262 (492)
T PLN02308 238 -ELLWGAAWLHKASRRREYREYIVKN 262 (492)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4578999999999999999987654
No 42
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=96.81 E-value=1 Score=53.28 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcccccCCCCCCCCCCCCh----------------hHHHHHHHhHhhhcccCCCCCcHHHHHHHHHHHHH
Q 005551 129 ALRLCAEQLSKSYDSRFGGFGSAPKFPRP----------------VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQC 192 (691)
Q Consensus 129 ~~~~~~~~l~~~~D~~~GGfg~apKFP~~----------------~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~ 192 (691)
.....+-.|+...|..+|++=-+|-+|.. ....-|+... . .+.+.+.|+-
T Consensus 257 ~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G----------~----~~~a~~~l~~ 322 (616)
T TIGR01577 257 LYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAG----------Y----HDRVDRFFRW 322 (616)
T ss_pred HHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCC----------C----HHHHHHHHHH
Confidence 44444455677778888887667776521 1111222111 1 2233444444
Q ss_pred HHhCCCcccCCCcEEEEEcCCCCCCC-CCchhHHHHHHHHHHHHHHHHccCChHH----HHHHHHHHHHHHHhc
Q 005551 193 MAKGGIHDHVGGGFHRYSVDERWHVP-HFEKMLYDQGQLANVYLDAFSLTKDVFY----SYICRDILDYLRRDM 261 (691)
Q Consensus 193 m~~GGi~D~v~GGF~RYsvD~~W~vP-HfEKmLydnA~ll~~ya~Ay~~tg~~~y----~~~A~~~~~~l~~~m 261 (691)
|.. ....-|+..++|.+|.... | ....-+-..|..+++....++.++|..+ ...++.+++|+.+..
T Consensus 323 l~~--~q~~~G~~~~~~~~dG~~~-~~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~ 393 (616)
T TIGR01577 323 AMQ--TQSRDGSWQQRYYLNGRLA-PLQWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFI 393 (616)
T ss_pred HHH--hhCcCCCcceEEecCCCCC-CCCCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 444 1212233477888886543 3 1245555588899988888899998644 456789999998843
No 43
>PLN02266 endoglucanase
Probab=96.69 E-value=0.12 Score=59.27 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=47.2
Q ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 005551 201 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL--TKDVFYSYICRDILDYLRRDMIGPGGEIFSA 271 (691)
Q Consensus 201 ~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~--tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa 271 (691)
.+-||+|-=-.-.+..+| |-|.-.+|.+.|.+--.. .+-|.+++.++=.++|+++ |..++|+||.-
T Consensus 89 DlsGGwyDAGD~~Kf~~p----~a~s~t~L~w~~~ef~~~~~~~~pd~Ldelkw~~D~llk-~~~~~~~vy~q 156 (510)
T PLN02266 89 DLVGGYYDAGDNVKFGFP----MAFTTTMLSWSVIEFGGLMKSELQNAKDAIRWATDYLLK-ATAHPDTIYVQ 156 (510)
T ss_pred cCCCcceeCCCCceecch----HHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHH-hccCCCeEEEE
Confidence 567888841122234466 889888999988763222 3568899999999999997 66677888874
No 44
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.67 E-value=0.22 Score=57.32 Aligned_cols=293 Identities=18% Similarity=0.170 Sum_probs=158.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeee
Q 005551 214 RWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVW 293 (691)
Q Consensus 214 ~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~DADs~~~~~~~~~~EG~yY~w 293 (691)
.-.|+-||- +-++|-.+.-||.+++++.|++.|.+..+-|+.-+-.|.|-=|+..+-... . .....|
T Consensus 148 ~~~vsvFEt----tIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g--------~-~~~~~~ 214 (522)
T PTZ00470 148 GLGVSVFET----TIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATG--------R-KSYPGW 214 (522)
T ss_pred CCeeeeeee----ehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC--------C-CCCccc
Confidence 345677884 447788888899999999999999999999998886676644443332210 0 000112
Q ss_pred chHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005551 294 TSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 373 (691)
Q Consensus 294 t~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~ 373 (691)
.... ..+.+ -|. |. -....+++..| ..+..+..+.+.+.|.+.
T Consensus 215 ~~~~--~~lAe-------------~gS------------------l~--LEF~~LS~lTG--d~kY~~~a~~i~~~l~~~ 257 (522)
T PTZ00470 215 AGGC--SILSE-------------VGT------------------LQ--LEFNYLSEITG--DPKYAEYVDKVMDALFSM 257 (522)
T ss_pred CCCc--cchhh-------------hhh------------------HH--HHHHHHHHhhC--CHHHHHHHHHHHHHHHhc
Confidence 1000 00000 000 00 00001111111 123445556666666654
Q ss_pred hhcCCCCCCCcchhh-----------chHHHH---HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHH
Q 005551 374 RSKRPRPHLDDKVIV-----------SWNGLV---ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRR 439 (691)
Q Consensus 374 R~~R~~P~~Ddkilt-----------~WNal~---i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~ 439 (691)
|.. .|.+=...|- +|-|.. -.=|.+.+..++.. .+.|.++-..+++-+++
T Consensus 258 ~~~--~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~--------------d~~~~~~~~~a~~~i~~ 321 (522)
T PTZ00470 258 KPA--INGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGR--------------EERYRRLFVESAKGIIE 321 (522)
T ss_pred CCC--CCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCC--------------cHHHHHHHHHHHHHHHH
Confidence 322 0221111111 111111 12367777777531 16788888888888888
Q ss_pred hcccc-CCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHH-------cCChHHHHHHHHHHHHHHHhcccccCCc---
Q 005551 440 HLYDE-QTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEF-------GSGTKWLVWAIELQNTQDELFLDREGGG--- 508 (691)
Q Consensus 440 ~~~d~-~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~-------Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg--- 508 (691)
|+... .++.++..-.+|.. .....+--++++-|++.|.-. ..+++|++.|++|.+.+...+....+|-
T Consensus 322 ~l~~~s~~~~~~v~~~~~~~-~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y~~~~tGl~PE 400 (522)
T PTZ00470 322 HLYKRSPKGLTYIAEMDGGS-LTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGLGPE 400 (522)
T ss_pred HhcccCCCCcEEEeeccCCc-CcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhcccCCCCc
Confidence 87532 22433333222221 222333445667888888642 2357899999999999988875544442
Q ss_pred -cccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 005551 509 -YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLM 582 (691)
Q Consensus 509 -~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~~ 582 (691)
|...... ..... ...|...+= --..+..+.-|+++||+ +.|++.+-++++++.... +.+.+++.+
T Consensus 401 ~~~~~~~~-~~~~~---~~~d~~Y~L-RPE~iES~fylyR~TgD---~~yre~gW~~f~ai~k~~-rt~~Gya~i 466 (522)
T PTZ00470 401 IFHFDPNS-GDISP---NVHDSHYIL-RPETVESIFILYRLTGD---PKYREWAWKIFQAIEKHC-KTENGYSGL 466 (522)
T ss_pred eEEeccCc-ccccc---ccCCCCCCC-ChhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh-cCCcccccc
Confidence 2111110 00000 001111110 12678899999999996 789999999999986654 567776654
No 45
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=96.65 E-value=0.0077 Score=63.54 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHH
Q 005551 394 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 473 (691)
Q Consensus 394 ~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~a 473 (691)
+|..|++||+|+++ ++|++.|.++++-+++.=.-+.+-++.| |.+ | + .++
T Consensus 285 v~~~L~kAy~VF~E----------------ekyl~aa~ecadvVW~rGlLkkg~Gich----Gva---G--N-----aYv 334 (403)
T KOG2787|consen 285 VAYTLAKAYQVFKE----------------EKYLEAAMECADVVWKRGLLKKGVGICH----GVA---G--N-----AYV 334 (403)
T ss_pred HHHHHHHHHHHhhH----------------HHHHHHHHHHHHHHHHhhhhhcCCcccc----ccc---C--c-----hhh
Confidence 68889999999997 8999999999999876422211223333 211 1 1 356
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHh
Q 005551 474 LLDLYEFGSGTKWLVWAIELQNTQDEL 500 (691)
Q Consensus 474 ll~Ly~~Tgd~~~L~~A~~L~~~~~~~ 500 (691)
+|.||++|+|.+||.+|.+.++.+.+.
T Consensus 335 FLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 335 FLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred hHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 778999999999999999999998775
No 46
>PLN02613 endoglucanase
Probab=96.65 E-value=0.045 Score=62.47 Aligned_cols=181 Identities=17% Similarity=0.239 Sum_probs=106.8
Q ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHH---HHHc-cCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCc
Q 005551 201 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSL-TKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADS 276 (691)
Q Consensus 201 ~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~---Ay~~-tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~DADs 276 (691)
.+-||+|-=-.-.+..+| |-|.-+.|.|.|.+ ++.- .+.+..++.++=.++||++ |..+.++||.- ..|.
T Consensus 69 DlsGGwyDAGD~~Ky~~p----~a~s~t~L~w~~~e~~~~~~s~~~~~d~ldeikw~lD~llk-m~~~~~~~~~Q-VGdg 142 (498)
T PLN02613 69 NLTGGYYDAGDNVKFGWP----MAFTVTLLSWAAIEYQNEISSVNQLGYLRSAIRWGTDFILR-AHTSPTTLYTQ-VGDG 142 (498)
T ss_pred cCCCCceeCCCCceecCc----hHHHHHHHHHHHHHhHHHHhhcCCchHHHHHHHHHHHHHHH-hccCCCeEEEE-eCCC
Confidence 567888852222344467 99999999988755 4443 3468899999999999997 65666778763 2222
Q ss_pred ccccCcccccCCceeeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCH
Q 005551 277 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 356 (691)
Q Consensus 277 ~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~ 356 (691)
.. .|+ .|..-|.. . ..+.+..+
T Consensus 143 ~~----dH~------~W~~Pe~~---------------------------~------~~R~~~~~--------------- 164 (498)
T PLN02613 143 NA----DHQ------CWERPEDM---------------------------D------TPRTLYKI--------------- 164 (498)
T ss_pred Cc----ccc------ccCCcccc---------------------------C------CCCeeEec---------------
Confidence 10 011 13311100 0 00111000
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 005551 357 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 436 (691)
Q Consensus 357 ~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~ 436 (691)
....|. |+.-+-++.|||.|++++++- +..|. .++|+.|+++.+|
T Consensus 165 -------------------t~~~pg------Td~a~~~AAALAaas~vfk~~--D~~yA--------~~~L~~Ak~ly~~ 209 (498)
T PLN02613 165 -------------------TSSSPG------SEAAGEAAAALAAASLVFKDV--DSSYS--------SKLLNHARSLFEF 209 (498)
T ss_pred -------------------CCCCCc------cHHHHHHHHHHHHHHHhcccC--CHHHH--------HHHHHHHHHHHHH
Confidence 001122 233477899999999999861 11111 4679999999999
Q ss_pred HHHhccccCCCeEEEEecCCCC---CCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 005551 437 IRRHLYDEQTHRLQHSFRNGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIE 492 (691)
Q Consensus 437 l~~~~~d~~~g~l~~~~~~g~~---~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~ 492 (691)
..++= |.+. +..+ ...++.|+ +++|.++||.+|||+.|++.+..
T Consensus 210 a~~~~-----g~y~----~~~~~y~s~s~~~DE---l~WAAawLy~aTGd~~Yl~~~~~ 256 (498)
T PLN02613 210 ADKYR-----GSYQ----ASCPFYCSYSGYQDE---LLWAAAWLYKATGEKKYLNYVIS 256 (498)
T ss_pred HHhCC-----CCcC----CCCCcccccCccchH---HHHHHHHHHHHhCCHHHHHHHHh
Confidence 98651 2111 1111 01234444 56789999999999999987764
No 47
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.63 E-value=0.91 Score=55.48 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 471 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li 471 (691)
+=++++|+.+++++++ ++|++.|.++.++...++... .+.+. ..++.....++....+=.+
T Consensus 646 sGi~~aL~~l~~~~~d----------------~~~~~~a~~~l~~~~~~~~~~-~~~w~--~~~~~~~~~~WChG~~GI~ 706 (825)
T cd04792 646 SGIAWALLRLYKVTGD----------------SRYLKLAHKALKYERRLFSEE-GWNWP--RKDGNSFSAAWCHGAPGIL 706 (825)
T ss_pred HHHHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHhcCHh-hcCCC--CcCcCCCCCcccCCcHHHH
Confidence 4478899999999988 799999999999876654331 11111 1111122345666667778
Q ss_pred HHHHHHHHH--cCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHh
Q 005551 472 SGLLDLYEF--GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV 549 (691)
Q Consensus 472 ~all~Ly~~--Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt 549 (691)
.+++.++++ ..++.+.+.+.++.+.+...... . +. ..--|++=.+..|+.++..+
T Consensus 707 lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~~-------~----~~------------slCHG~~Gil~~ll~~~~~~ 763 (825)
T cd04792 707 LARLELLKFNDLDDEELKEEIEIALKTTLKEGFG-------N----NH------------SLCHGDLGNLEILLYAAKAF 763 (825)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHhcCC-------C----CC------------eecCCCcchHHHHHHHHHhc
Confidence 899999999 68888888888877766543210 0 00 01112333456778888888
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHh
Q 005551 550 AGSKSDYYRQNAEHSLAVFETRLKD 574 (691)
Q Consensus 550 ~~~~~~~y~~~A~~~l~~~~~~i~~ 574 (691)
++ ++|.+.|+++...+.....+
T Consensus 764 ~~---~~~~~~a~~~~~~l~~~~~~ 785 (825)
T cd04792 764 GD---EKLQELANSLAIKVLSQGKK 785 (825)
T ss_pred CC---HHHHHHHHHHHHHHHHHHHh
Confidence 75 67888888877776655543
No 48
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.56 E-value=0.17 Score=56.74 Aligned_cols=125 Identities=20% Similarity=0.214 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 471 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li 471 (691)
+-+|.++..+++++|. ...++.+.+++++|...+- +..+.. ....+ +--+-
T Consensus 134 ghLieg~va~~qaTGk----------------r~lldV~~rlADhi~tvfg-p~~~q~--------~g~~g----H~eie 184 (589)
T COG3533 134 GHLIEGGVAAHQATGK----------------RRLLDVVCRLADHIATVFG-PEEDQV--------PGYCG----HPEIE 184 (589)
T ss_pred HHHHhhhhHHHHhhCc----------------chHHHHHHHHHHhhhhhcC-cccccc--------ccccC----CCchh
Confidence 6789999999999997 7899999999999987763 222211 11112 12345
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHH----HHHHHHHHHH
Q 005551 472 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV----SVINLVRLAS 547 (691)
Q Consensus 472 ~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv----~a~~LlrL~~ 547 (691)
.||.+||++||+++||+.|+.+...- -.++ +... .+ +. + .+.++ ....+.+|+.
T Consensus 185 lAl~~Ly~~Tg~~rYL~LA~~Fi~~r---g~~P-----~~~r-g~--------e~-~----~gHAvr~iyl~~G~A~l~~ 242 (589)
T COG3533 185 LALAELYRLTGDQRYLDLARRFIHQR---GVEP-----LAQR-GD--------EL-E----GGHAVRQIYLYIGAADLAE 242 (589)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHh---ccCh-----hhcC-ch--------hh-h----hhhHHHHHHHhhhHHHHHH
Confidence 89999999999999999998544331 1111 1100 00 10 1 23332 3345788999
Q ss_pred HhCCCCchHHHHHHHHHHHHHHH
Q 005551 548 IVAGSKSDYYRQNAEHSLAVFET 570 (691)
Q Consensus 548 lt~~~~~~~y~~~A~~~l~~~~~ 570 (691)
++|+ +.++..++.+.+.+..
T Consensus 243 ~~gD---ds~r~~~~~lW~~~t~ 262 (589)
T COG3533 243 ETGD---DSLRQAAEFLWQNVTT 262 (589)
T ss_pred HhCC---HHHHHHHHHHHHHhhh
Confidence 9986 6788888887777654
No 49
>smart00594 UAS UAS domain.
Probab=96.53 E-value=0.0014 Score=60.71 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=41.2
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCC
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 59 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~ 59 (691)
|.+++|.|++|.++||+|||.+++|-+.-... ..++.+ +-.|+|..+|+.|.+
T Consensus 45 ~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~-----~l~~~~-~~~~~P~~~~l~~~~ 97 (122)
T smart00594 45 FNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQ-----RVSQFY-KLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHHccCHHHHHHHHcCEEEEEecCCChhHH-----HHHHhc-CcCCCCEEEEEecCC
Confidence 57889999999999999999999997753321 122222 556899999999997
No 50
>PLN02420 endoglucanase
Probab=96.50 E-value=0.088 Score=60.48 Aligned_cols=189 Identities=14% Similarity=0.205 Sum_probs=108.0
Q ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHH---HHHcc-CChHHHHHHHHHHHHHHHhccCCCCceeeec-cCC
Q 005551 201 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DAD 275 (691)
Q Consensus 201 ~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~---Ay~~t-g~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~-DAD 275 (691)
.+-||+|-=-.-.+..+| |-|.-+.|+|.|.+ +|... +-|..++.++=.++|+++ |....+.||.-. |.+
T Consensus 84 DlsGGwyDAGD~~Kf~~p----~a~t~~~L~w~~~ef~d~~~~~g~~~d~Ldeikw~lD~llk-~~~~~~~~~~qvGdg~ 158 (525)
T PLN02420 84 DLVGGYHDAGDHVKFGLP----MAFTVTMLSWSVIEYGDQLASTGELSHALEAIKWGTDYFIK-AHTSPNVLWAEVGDGD 158 (525)
T ss_pred cCCCcceecCccceecch----HHHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHH-hCcCCCceEEeeCCCC
Confidence 467888842222344566 99999999999865 44433 358889999999999997 544456676532 222
Q ss_pred cccccCcccccCCceeeechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCC
Q 005551 276 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 355 (691)
Q Consensus 276 s~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~ 355 (691)
.+ + ++ |...|... ..+.+..+.
T Consensus 159 ~D-------H----~~-w~~Pe~~~---------------------------------~~R~~~~i~------------- 180 (525)
T PLN02420 159 TD-------H----YC-WQRPEDMT---------------------------------TSRRAFKID------------- 180 (525)
T ss_pred cc-------c----cc-ccChhhcc---------------------------------ccCceEEec-------------
Confidence 11 1 12 44322100 001110000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 005551 356 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 435 (691)
Q Consensus 356 ~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~ 435 (691)
-..|. |+--+-+..|||.|++++++. +..| ..++|+.|+++++
T Consensus 181 ---------------------~~~pg------sd~aa~~AAALA~AS~vfk~~--D~~Y--------A~~~L~~Ak~ly~ 223 (525)
T PLN02420 181 ---------------------ENNPG------SDIAGETAAAMAAASIVFRST--NPHY--------SHLLLHHAQQLFE 223 (525)
T ss_pred ---------------------CCCCc------cHHHHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHH
Confidence 01122 222377899999999999861 0111 1467999999999
Q ss_pred HHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005551 436 FIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 494 (691)
Q Consensus 436 ~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~ 494 (691)
|..++= |.+-.....+.+.........-.+++|.+.||++|||..|++.+.+..
T Consensus 224 fA~~~~-----g~y~~~~~~~~g~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~a~~~~ 277 (525)
T PLN02420 224 FGDKYR-----GKYDESLKVVKSYYASVSGYMDELLWGATWLYRATDNEHYMSYVVDMA 277 (525)
T ss_pred HHHhcC-----CccCCCCcccCCCCCCcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 988531 211000000011011111123567899999999999999999887543
No 51
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=96.50 E-value=0.28 Score=53.50 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCCCCCcccHHHHHH
Q 005551 394 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFLIS 472 (691)
Q Consensus 394 ~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g-~~~~~~~l~DyA~li~ 472 (691)
++++|..+++.+++ +++.+.++++.+++.+.. . +.|.+.....+. ......+...-+=.+.
T Consensus 170 I~~~L~~~~~~~~~----------------~~~~~~i~~~i~~~~~~~-~-~~g~w~~~~~~~~~~~~~~wChG~~Gi~~ 231 (343)
T cd04794 170 ILYILLQTPLFLLK----------------PSLAPLIKRSLDYLLSLQ-F-PSGNFPSSLGNRKRDRLVQWCHGAPGIVY 231 (343)
T ss_pred HHHHHHhhhhhcCC----------------ccHHHHHHHHHHHHHHhh-c-cCCCCCCccCCCCCCccccccCCCchHHH
Confidence 56778888888776 789999999999998763 3 234332211111 1111123333344677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCC
Q 005551 473 GLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 552 (691)
Q Consensus 473 all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~ 552 (691)
+++.++++++|+++.+.|....+.+.+. | +.. .+..+ .. | -+|| +..|++++..|++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~---~~~~l----CH---G--~~G~---~~~lL~~~~~~~~- 288 (343)
T cd04794 232 LLAKAYLVFKEEQYLEAAIKCGELIWKR------G-LLK---KGPGL----CH---G--IAGN---AYAFLLLYRLTGD- 288 (343)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh------C-Ccc---CCCcc----cc---C--ccch---HHHHHHHHHHhCc-
Confidence 8999999999999999999887765322 1 100 00000 00 1 1333 5788999999986
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 005551 553 KSDYYRQNAEHSLAVFETRLK 573 (691)
Q Consensus 553 ~~~~y~~~A~~~l~~~~~~i~ 573 (691)
++|.++|..+.........
T Consensus 289 --~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 289 --LKYLYRACKFAEFLINYGF 307 (343)
T ss_pred --HHHHHHHHHHHHHHhcchh
Confidence 7899999888777665543
No 52
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=96.37 E-value=0.3 Score=52.89 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 005551 225 YDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 270 (691)
Q Consensus 225 ydnA~ll~~ya~Ay~~tg--~~~y~~~A~~~~~~l~~~m~~~~Ggfys 270 (691)
.+.|..+.+++.+....+ ++.+.+.+.++++||.+. +.++|+|..
T Consensus 92 ~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~-Q~~dG~f~~ 138 (348)
T cd02889 92 DDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSM-QNSNGGFAA 138 (348)
T ss_pred CChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHh-ccCCCCEee
Confidence 488999999998888763 578899999999999975 678899864
No 53
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.28 E-value=0.0052 Score=56.68 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=53.3
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCCCCHHH---HH--HHHHHHhcCCCCCCceEEeCCC-Ccceeec-cccCCCCC
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK---VY--MTYVQALYGGGGWPLSVFLSPD-LKPLMGG-TYFPPEDK 73 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreerPdid~---~y--m~~~q~~~g~gGWPl~vfltPd-~~Pf~~g-TY~P~~~~ 73 (691)
|..+.++++++++.++++|+.|+||.++.+.+-. .. ...+....|.-|.|.++|+.|+ |++..-- .|.++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~--- 108 (125)
T cd02951 32 LKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPP--- 108 (125)
T ss_pred HHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCCCCceeEEecCCCCH---
Confidence 3456678899999999999999999987642210 00 0111112267799999999999 8886432 24443
Q ss_pred CCCccHHHHHHHHH
Q 005551 74 YGRPGFKTILRKVK 87 (691)
Q Consensus 74 ~g~~gf~~~L~~i~ 87 (691)
..|.++|+.+.
T Consensus 109 ---~~~~~~l~~~~ 119 (125)
T cd02951 109 ---DEFLAYLEYVQ 119 (125)
T ss_pred ---HHHHHHHHHHH
Confidence 25777777654
No 54
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.16 E-value=0.0041 Score=57.27 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=48.6
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCccee---eccccCCCCCCCCc
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM---GGTYFPPEDKYGRP 77 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~---~gTY~P~~~~~g~~ 77 (691)
|+...++.+++.+ +|.+||.|.||.++.| +++.|+ -.+|++|..+|++|+|++.- +--..+. ..
T Consensus 37 ~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~-~~~~~~------~~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~-----~~ 103 (117)
T cd02959 37 LKPKFAESKEISE-LSHNFVMVNLEDDEEP-KDEEFS------PDGGYIPRILFLDPSGDVHPEIINKKGNPN-----YK 103 (117)
T ss_pred HHHHHhhhHHHHh-hcCcEEEEEecCCCCc-hhhhcc------cCCCccceEEEECCCCCCchhhccCCCCcc-----cc
Confidence 3444455667666 7899999999987655 344441 12346999999999999853 3222332 34
Q ss_pred cHHHHHHHHHH
Q 005551 78 GFKTILRKVKD 88 (691)
Q Consensus 78 gf~~~L~~i~~ 88 (691)
+|.+.|..|.+
T Consensus 104 ~f~~~~~~~~~ 114 (117)
T cd02959 104 YFYSSAAQVTE 114 (117)
T ss_pred ccCCCHHHHHh
Confidence 67777776643
No 55
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.10 E-value=1.2 Score=47.42 Aligned_cols=133 Identities=12% Similarity=-0.011 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCCCCCcccHHHHH
Q 005551 394 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKAPGFLDDYAFLI 471 (691)
Q Consensus 394 ~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~--~~~g~~~~~~~l~DyA~li 471 (691)
++.+|+.+++.+.+ +.+.+.++.+..++.+...+ . +..+.. ..++.....++...-+=.+
T Consensus 164 i~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~wChG~~Gi~ 225 (343)
T cd04434 164 ILLALLLLYKKTVD----------------KSLEALIKALLKYERRLQDD-S-GGFWWPSRSNGGNRFLVAWCHGAPGIL 225 (343)
T ss_pred HHHHHHHHHHhcCC----------------hhHHHHHHHHHHHHHHccCC-C-CCCCCCCCCCCCccccceecCCChhHH
Confidence 68889999998855 56777777777766655433 2 222221 1111223345555556678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005551 472 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 551 (691)
Q Consensus 472 ~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~ 551 (691)
.+++.+++.++++.+.+.+.+..+.+.+..... . .+...-.|.+=.+..|++++..+++
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~~~~lChG~~G~~~~ll~l~~~~~~ 284 (343)
T cd04434 226 LALLLAYKALGDDKYDEAAEKALELAWKRGLLE---------L------------KNPGLCHGIAGNLLILLLLYKLTGD 284 (343)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc---------C------------CCCCcCcCccchHHHHHHHHHHhCC
Confidence 999999999999999999999888877664321 0 0111223444556778889999985
Q ss_pred CCchHHHHHHHHHHHHH
Q 005551 552 SKSDYYRQNAEHSLAVF 568 (691)
Q Consensus 552 ~~~~~y~~~A~~~l~~~ 568 (691)
+.+++.++.+....
T Consensus 285 ---~~~~~~a~~~~~~~ 298 (343)
T cd04434 285 ---LKFLARALALALLL 298 (343)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 67888887666543
No 56
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.01 E-value=0.041 Score=63.20 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=68.2
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcccc-CCCCCCccccccccCCCCCCCChHHHHHHHHH
Q 005551 465 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN-TTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 543 (691)
Q Consensus 465 ~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~-~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~Ll 543 (691)
|-..=.+-|||.+|..|+|+.||++|++|.+.+..-| |..+|--+. ............. ....+..+.-+.+..-+.
T Consensus 155 EttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AF-dTptgiP~~~vnl~~g~~~~~~~-~~~~~~lAe~gSl~LEF~ 232 (522)
T PTZ00470 155 ETTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAF-NEDTGFPASEINLATGRKSYPGW-AGGCSILSEVGTLQLEFN 232 (522)
T ss_pred eeehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccCCCCCccc-CCCccchhhhhhHHHHHH
Confidence 3334458999999999999999999999999999988 555553221 1111110000000 012233444555666799
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005551 544 RLASIVAGSKSDYYRQNAEHSLAVFET 570 (691)
Q Consensus 544 rL~~lt~~~~~~~y~~~A~~~l~~~~~ 570 (691)
+|+++||+ +.|.+.|+++...+..
T Consensus 233 ~LS~lTGd---~kY~~~a~~i~~~l~~ 256 (522)
T PTZ00470 233 YLSEITGD---PKYAEYVDKVMDALFS 256 (522)
T ss_pred HHHHhhCC---HHHHHHHHHHHHHHHh
Confidence 99999996 7899999999988764
No 57
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.70 E-value=0.19 Score=54.69 Aligned_cols=79 Identities=22% Similarity=0.234 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHH
Q 005551 394 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 473 (691)
Q Consensus 394 ~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~a 473 (691)
++.+|..+++++++ +++.+.|+++.+.+.+.-.-..+.++.| |. +=.+.+
T Consensus 229 i~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~lCH----G~----------~G~~~~ 278 (343)
T cd04794 229 IVYLLAKAYLVFKE----------------EQYLEAAIKCGELIWKRGLLKKGPGLCH----GI----------AGNAYA 278 (343)
T ss_pred HHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCccCCCcccc----Cc----------cchHHH
Confidence 45577788899987 7899999998887653211101123333 22 223689
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005551 474 LLDLYEFGSGTKWLVWAIELQNTQDELFL 502 (691)
Q Consensus 474 ll~Ly~~Tgd~~~L~~A~~L~~~~~~~F~ 502 (691)
|+.+|+.|++++|+++|..+++.+.+...
T Consensus 279 lL~~~~~~~~~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 279 FLLLYRLTGDLKYLYRACKFAEFLINYGF 307 (343)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999988754
No 58
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.58 E-value=0.82 Score=52.02 Aligned_cols=295 Identities=16% Similarity=0.096 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCC-CCCCC---chhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005551 180 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERW-HVPHF---EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILD 255 (691)
Q Consensus 180 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W-~vPHf---EKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~ 255 (691)
+..++.|..--+.+.. .+|--.|=.+. .++-.- ..+++ +-.|-+-+-+..-+....++|||+.|.+.|+++.+
T Consensus 98 ~~lL~kA~~lad~Ll~--aF~t~~g~P~~-~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~ 174 (452)
T PF01532_consen 98 PILLSKAVELADRLLP--AFDTPTGIPYP-RVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYD 174 (452)
T ss_dssp HHHHHHHHHHHHHHGG--GGSSSSS---S-EEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--hccCCCccccc-eeeecccCCCCCCCCcccccccccceechhHHHHHhhccHHHHHHHHHHH
Confidence 4445555555555554 45554443332 222222 22222 33567777777778889999999999999999999
Q ss_pred HHHH--hccCCCCceeeeccCCcccccCcccccCCceeeechHHHHHHhhh-hHHHHHHHhcccCCCCcCCCCCCCCCCc
Q 005551 256 YLRR--DMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGE-HAILFKEHYYLKPTGNCDLSRMSDPHNE 332 (691)
Q Consensus 256 ~l~~--~m~~~~Ggfysa~DADs~~~~~~~~~~EG~yY~wt~~Ei~~~l~~-~~~~~~~~~~i~~~Gn~~~~~~~d~~~~ 332 (691)
.|.+ .-....|-|=...|+++.. -.+..+.|.. .++ -.+-+.+.|=+.
T Consensus 175 ~l~~~~~~~~~~gL~p~~id~~~g~-------~~~~~~~~Ga------~~DS~YEYLlK~~lL~---------------- 225 (452)
T PF01532_consen 175 ALWRSQNRSKIPGLFPNFIDPSTGK-------WTSSSISLGA------GGDSFYEYLLKMYLLL---------------- 225 (452)
T ss_dssp HHHCCCCCHSBTTB-BSEEETTTS--------BSSTEE-SST------TTHHHHHHHHHHHHHT----------------
T ss_pred HHHHhhhccCCcccCcceecCCcCc-------ccccccccCC------CcchHHHhhhhhhhhc----------------
Confidence 9988 3222445444467776531 1123333331 111 122222222222
Q ss_pred cCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcC-CCCC-CCcchhhchH---------------HHHH
Q 005551 333 FKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKR-PRPH-LDDKVIVSWN---------------GLVI 395 (691)
Q Consensus 333 ~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R-~~P~-~Ddkilt~WN---------------al~i 395 (691)
|-..+...+....+-+.+.+.=..+ ..|. .+-..+..++ +++-
T Consensus 226 --------------------g~~d~~~~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~p 285 (452)
T PF01532_consen 226 --------------------GGTDEQYRDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLP 285 (452)
T ss_dssp --------------------TTTTHHHHHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHH
T ss_pred --------------------CccchHHHHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcch
Confidence 1112233333333333333321111 1111 1111222221 2223
Q ss_pred HHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCC-----------CCCCC-
Q 005551 396 SSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGP-----------SKAPG- 462 (691)
Q Consensus 396 ~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~-~g~-----------~~~~~- 462 (691)
.-|+-.++.+++ +.+++.|.++.+..........+|..-..+. +.. .....
T Consensus 286 G~l~Lg~~~~~~----------------~~~~~~A~~l~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~ 349 (452)
T PF01532_consen 286 GMLALGAKLFND----------------EGDLELAEELTETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKI 349 (452)
T ss_dssp HHHHHHHHTTTC----------------HHHHHHHHHHHHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHG
T ss_pred hHHHHhhcccCc----------------hhHHHHHHHHHHHHHHHHHhcccCCCceEEEeeccccccccchhhccccccc
Confidence 334455555544 7899999999988765433222354333321 110 00000
Q ss_pred CcccH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHH
Q 005551 463 FLDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 539 (691)
Q Consensus 463 ~l~Dy---A~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a 539 (691)
....| -.+|+.+.-+|++|||+.|+++|-++++.+..++.- ..||-...+-... ....++.+|| ...+
T Consensus 350 ~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k~~r~--~~G~a~i~dv~~~-----~~~~~D~meS--f~la 420 (452)
T PF01532_consen 350 SDPRYLLRPETIESLFYLYRATGDPKYREWGWDIFQAIEKYCRT--ECGYAGIKDVTSD-----PPQKDDRMES--FFLA 420 (452)
T ss_dssp GG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHHHHTEE--TTEE--BSETTSS-----SSCBBS-B-C--HHHH
T ss_pred ccccccchhhhhhheeEEEEEcCCchHHHHHHHHHHHHHHhccc--ceehhhhcccCcC-----CcccCCCccc--eehH
Confidence 11122 378999999999999999999999999999998843 3455432211000 1111233444 4566
Q ss_pred HHHHHHHHHhCC
Q 005551 540 INLVRLASIVAG 551 (691)
Q Consensus 540 ~~LlrL~~lt~~ 551 (691)
.-|--|+-+..+
T Consensus 421 ETlKYlYLlFsd 432 (452)
T PF01532_consen 421 ETLKYLYLLFSD 432 (452)
T ss_dssp THHHHHHHHTSS
T ss_pred hhhHHHHhhcCC
Confidence 677777777764
No 59
>PLN02175 endoglucanase
Probab=95.54 E-value=0.31 Score=55.57 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCC---CCCcccH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKA---PGFLDDY 467 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g-~~~~---~~~l~Dy 467 (691)
+-+..|||.|++++++- +..|. .++|+.|+++.+|..++- |.+..+...+ .+.. .++.|
T Consensus 172 ae~AAALAaaS~vfk~~--D~~YA--------~~lL~~Ak~ly~fA~~~~-----g~y~~~~~~~~~~~Y~s~s~y~D-- 234 (484)
T PLN02175 172 AETAAALAAASMVFRKV--DSKYS--------RLLLATAKKVMQFAIQYR-----GAYSDSLSSSVCPFYCSYSGYKD-- 234 (484)
T ss_pred HHHHHHHHHHHHHhccc--CHHHH--------HHHHHHHHHHHHHHHhCC-----CCcccCccccccCccccCCCccH--
Confidence 77899999999999861 11111 357999999999998742 2221110000 0111 13334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHH
Q 005551 468 AFLISGLLDLYEFGSGTKWLVWAIE 492 (691)
Q Consensus 468 A~li~all~Ly~~Tgd~~~L~~A~~ 492 (691)
.+++|.+.||.+|||..|++.+..
T Consensus 235 -El~WAAawLY~ATgd~~Yl~~~~~ 258 (484)
T PLN02175 235 -ELMWGASWLLRATNDPYYANFIKS 258 (484)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 458889999999999999986644
No 60
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=95.49 E-value=0.011 Score=63.93 Aligned_cols=249 Identities=16% Similarity=0.198 Sum_probs=142.5
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC---CCceeeeccCCcccccCcccccCCceeeechHHHH
Q 005551 224 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP---GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVE 299 (691)
Q Consensus 224 Lyd-nA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~---~Ggfysa~DADs~~~~~~~~~~EG~yY~wt~~Ei~ 299 (691)
||+ -|-++.+|.++++.++++.|.+.+.+.++.+.+.+... ..|+|+ |.-|-. |...
T Consensus 7 ly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~--------------G~~Gi~--~~l~--- 67 (355)
T PF05147_consen 7 LYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFS--------------GLAGIA--YALS--- 67 (355)
T ss_dssp TTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTT--------------SCHHHH--HHHH---
T ss_pred CCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccC--------------ChHHHH--HHHH---
Confidence 455 67788999999999999999999999999998876432 222322 111111 1111
Q ss_pred HHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 005551 300 DILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPR 379 (691)
Q Consensus 300 ~~l~~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R~~ 379 (691)
-+...++ ....+.+.++.+.+.+.+.......
T Consensus 68 --------------~~~~~~~----------------------------------~~~~~~~~l~~~~~~i~~~~~~~~~ 99 (355)
T PF05147_consen 68 --------------YLSKRLG----------------------------------DEKYIEELLKRILNIIENSISNDSN 99 (355)
T ss_dssp --------------HHCCCTC----------------------------------HHHHHHHHHHHHHHCHHHHHHCT--
T ss_pred --------------HHHHhcc----------------------------------chHHHHHHHHHHHHHHHHhhhhccc
Confidence 0111000 1122334455555555443333221
Q ss_pred CCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--CCeEEEEecCCC
Q 005551 380 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--THRLQHSFRNGP 457 (691)
Q Consensus 380 P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~--~g~l~~~~~~g~ 457 (691)
...| ++. -.+=++..|...++.+++ +.++..+.+..+.|.+....-. ...+...+. ..
T Consensus 100 ~~~D--~l~-G~aGi~~~ll~~~~~~~~----------------~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 159 (355)
T PF05147_consen 100 NDYD--LLS-GLAGIGLYLLSLYEKTKD----------------PKYLDIIEKILEKLLESIINDDPSENQIGSEWK-EG 159 (355)
T ss_dssp GGCS--TTT-SHHHHHHHHCCHHHHHCC----------------HHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCH-TT
T ss_pred ccch--hhc-ccHHHHHHHHHHHhhccc----------------hHHHHHHHHHHHHHHHHHhhcccccCCCccccC-CC
Confidence 1111 122 223356667777777765 7888888888888877665410 000100001 11
Q ss_pred CCCCCCcccHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHH
Q 005551 458 SKAPGFLDDYAFLISGLLDLY-EFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 536 (691)
Q Consensus 458 ~~~~~~l~DyA~li~all~Ly-~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~ns 536 (691)
....|+....+=.+.+|+.+| +.++++++.+.+.++.+...+++... .++|........ . +. -.+--.|.+
T Consensus 160 ~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~-~----~~--~~~WC~G~~ 231 (355)
T PF05147_consen 160 FINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTD-DGGWPDNRNNSN-Y----KS--RPSWCYGSP 231 (355)
T ss_dssp BEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TG-CCT--SECTHHH-H----HC----SSSSSHH
T ss_pred CccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcc-cCCCCCCCCccc-c----cc--ccccccCcH
Confidence 223588899999999999999 69999999999999999998888543 344544322110 0 00 112345666
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005551 537 VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 570 (691)
Q Consensus 537 v~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~ 570 (691)
=.+..+.+++..+++ +.+.+.+++++.....
T Consensus 232 Gi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 262 (355)
T PF05147_consen 232 GILLALLKAYKILDD---EEYDEEAEQALESILQ 262 (355)
T ss_dssp HHHHHHHHHHHHCT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhch---HHHHHHHHHHHHHHHH
Confidence 677788889998864 7888888887777655
No 61
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=95.16 E-value=1.2 Score=49.30 Aligned_cols=84 Identities=15% Similarity=0.038 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 471 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li 471 (691)
.=++.+|..++++++| +.+.+.|.++.+.+...... .+ .....++....+=.+
T Consensus 247 ~Gi~~~l~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~--~~---------~~~~~~lChG~~G~~ 299 (382)
T cd04793 247 PGIARALQLAGKALDD----------------QKLQEAAEKILKAALKDKKQ--LS---------KLISPTLCHGLAGLL 299 (382)
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHhChhh--hc---------cCCCCCcCccHHHHH
Confidence 4467788889999987 78999999998776643211 00 112345667777778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005551 472 SGLLDLYEFGSGTKWLVWAIELQNTQDELFL 502 (691)
Q Consensus 472 ~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~ 502 (691)
..++.+|+.|++++|++.|..+.+.+++.+-
T Consensus 300 ~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 330 (382)
T cd04793 300 FIFYLLYKDTNTNEFKSALEYLLNQIISSYS 330 (382)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998874
No 62
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.10 E-value=0.15 Score=57.91 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=103.3
Q ss_pred hchHHHHHHHHHHHHHHh--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe--cC-CCCCCC-
Q 005551 388 VSWNGLVISSFARASKIL--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF--RN-GPSKAP- 461 (691)
Q Consensus 388 t~WNal~i~aLa~a~~~~--~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~--~~-g~~~~~- 461 (691)
-.-+.+++.+|.-||.+. +| +.+|+.|+++++.|...+-.+ +|--+... +. +.....
T Consensus 76 fEt~iR~lGgLLSay~ls~~~d----------------~~lL~kA~~lad~Ll~aF~t~-~g~P~~~~n~~~~~~~~~~~ 138 (452)
T PF01532_consen 76 FETTIRVLGGLLSAYDLSGEGD----------------PILLSKAVELADRLLPAFDTP-TGIPYPRVNLRTGGKNRWPG 138 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHGGGGSSS-SS---SEEETTTCEEETTCC
T ss_pred HHhhhHhhhhhHHHHHHHhccc----------------hHHHHHHHHHHHHHHHhccCC-CccccceeeecccCCCCCCC
Confidence 334678999999999999 87 789999999999999888443 55433322 22 111111
Q ss_pred --CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccc-ccCCcc---ccCCCCCCccccccccCCCCCCCChH
Q 005551 462 --GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD-REGGGY---FNTTGEDPSVLLRVKEDHDGAEPSGN 535 (691)
Q Consensus 462 --~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D-~~~Gg~---f~~~~~~~~l~~r~~~~~D~a~PS~n 535 (691)
..+.+.+-++.=+..|.+.|||++|.+.|.++.+.+.+.-.. +..|-+ .+... +.... ......++
T Consensus 139 ~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~--g~~~~------~~~~~Ga~ 210 (452)
T PF01532_consen 139 GESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPST--GKWTS------SSISLGAG 210 (452)
T ss_dssp GEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTT--S-BSS------TEE-SSTT
T ss_pred CcccccccccceechhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCc--Ccccc------cccccCCC
Confidence 234556667788899999999999999999999998763210 112221 22111 11110 01112222
Q ss_pred H-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 005551 536 S-VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 577 (691)
Q Consensus 536 s-v~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~ 577 (691)
+ ..-..|++.+.+++.. ++.|++.-.+.++.+...+...|.
T Consensus 211 ~DS~YEYLlK~~lL~g~~-d~~~~~~~~~a~~~i~~~Ll~~~~ 252 (452)
T PF01532_consen 211 GDSFYEYLLKMYLLLGGT-DEQYRDMYDEAVDAIKKHLLFRPS 252 (452)
T ss_dssp THHHHHHHHHHHHHTTTT-THHHHHHHHHHHHHHHHHTEEEBT
T ss_pred cchHHHhhhhhhhhcCcc-chHHHHHHHHHHHHHHHHhhccCC
Confidence 2 3677899999999953 367888888888877777654433
No 63
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=95.06 E-value=0.018 Score=51.20 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=46.4
Q ss_pred cCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCC-CCccee-eccccCC
Q 005551 4 ESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP-DLKPLM-GGTYFPP 70 (691)
Q Consensus 4 esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltP-d~~Pf~-~gTY~P~ 70 (691)
.-++++++++.++++|+-++||.++.++.+.-++ +.. |-.|+|..+|+.| +|+... ...|.+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~---~~~-~i~~~Pti~~~~~~~g~~~~~~~G~~~~ 96 (104)
T cd02953 32 VVFSDPEVQAALKKDVVLLRADWTKNDPEITALL---KRF-GVFGPPTYLFYGPGGEPEPLRLPGFLTA 96 (104)
T ss_pred HhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHH---HHc-CCCCCCEEEEECCCCCCCCcccccccCH
Confidence 3467799999999999999999998765543332 222 6678999999999 888653 4455554
No 64
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=94.92 E-value=0.042 Score=50.62 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=40.0
Q ss_pred ccCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCC
Q 005551 3 VESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 59 (691)
Q Consensus 3 ~esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~ 59 (691)
+++|.||+|.++||++||.+++|-+..-. ..+++.+ +-.+.|..+|+.|..
T Consensus 37 ~~~l~~~~v~~~ln~~fv~w~~dv~~~eg-----~~la~~l-~~~~~P~~~~l~~~~ 87 (116)
T cd02991 37 RNTLCAPEVIEYINTRMLFWACSVAKPEG-----YRVSQAL-RERTYPFLAMIMLKD 87 (116)
T ss_pred HHHcCCHHHHHHHHcCEEEEEEecCChHH-----HHHHHHh-CCCCCCEEEEEEecC
Confidence 57899999999999999999999986431 2334444 566999999997643
No 65
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=94.92 E-value=11 Score=44.84 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=43.7
Q ss_pred CCcEEEEEc-CCCCCCCCCchhHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 005551 203 GGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 270 (691)
Q Consensus 203 ~GGF~RYsv-D~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg--~~~y~~~A~~~~~~l~~~m~~~~Ggfys 270 (691)
.||+- |+. +..|.+. -|.|..+.++..+....+ +..+.++++++++||++ |++++|||.+
T Consensus 359 ~GGW~-fs~~~~~~pd~------d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~-~Qn~dGgf~~ 421 (634)
T cd02892 359 KGGWA-FSTANQGYPDS------DDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLG-MQNSNGGFAA 421 (634)
T ss_pred CCCCC-CCCCCCCCCCc------CchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHh-ccCCCCCEee
Confidence 56664 553 3334333 378999999988776653 56788999999999996 6888999854
No 66
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=94.71 E-value=12 Score=44.69 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=43.7
Q ss_pred CCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005551 203 GGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 270 (691)
Q Consensus 203 ~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfys 270 (691)
.||+- |++...+- | -+-|.|..+.++..+ ....++.+....+++++||++ |++++|||-+
T Consensus 365 ~GGW~-f~~~~~~~-p----d~ddTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~-~Qn~dGgw~a 424 (635)
T TIGR01507 365 PGGWA-FQFDNVYY-P----DVDDTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAG-MQSSNGGWGA 424 (635)
T ss_pred CCccC-CCCCCCCC-C----CchhHHHHHHHHHHc-CCCccccchHHHHHHHHHHHH-hcCCCCCEec
Confidence 56665 56544422 2 467899999998876 344566788899999999997 6788999843
No 67
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=94.61 E-value=4.3 Score=43.46 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 005551 180 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 259 (691)
Q Consensus 180 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~ 259 (691)
+++.+++...+.++.. |-+-+|||-=|. +-.--....|..+.++.+|-+.. +.-..+.+++++||.+
T Consensus 48 ~~~~~~i~~g~~r~l~---~q~~dGsf~~w~--------~~~~s~wlTA~v~~~l~~a~~~~--~v~~~~l~~a~~wL~~ 114 (297)
T cd02896 48 DEALKYIRQGYQRQLS---YRKPDGSYAAWK--------NRPSSTWLTAFVVKVFSLARKYI--PVDQNVICGSVNWLIS 114 (297)
T ss_pred HHHHHHHHHHHHHHHh---ccCCCCCccCCC--------CCCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHh
Confidence 4788888888888876 666789885331 11335667999999999997654 3345789999999998
Q ss_pred hccCCCCceee
Q 005551 260 DMIGPGGEIFS 270 (691)
Q Consensus 260 ~m~~~~Ggfys 270 (691)
. +.++|+|-.
T Consensus 115 ~-Q~~dG~f~e 124 (297)
T cd02896 115 N-QKPDGSFQE 124 (297)
T ss_pred c-CCCCCeeCC
Confidence 7 788998853
No 68
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=94.42 E-value=9.6 Score=45.33 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCCCChhHHHHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCc
Q 005551 126 PQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG 205 (691)
Q Consensus 126 ~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GG 205 (691)
...+++++.+.|... |...|++|.. |.+..+..|--+.. +. ...+. ..+.++.+.. =+..+.+|+
T Consensus 234 r~~a~~~~~~~i~~~-q~~~g~~~~~---~~~~~l~~lal~~~-----g~-~~~~~----~~~~l~~l~~-~~~~~~~g~ 298 (634)
T cd02892 234 RRKALRKAYEWILYR-DENTGYLGII---PPPKANNMLALWVL-----GY-PDSPA----FKRHLERIDD-FLWLGPEGM 298 (634)
T ss_pred HHHHHHHHHHHHHHH-hcCCCceeee---ehHHHHHHHHHHHc-----CC-CCCHH----HHHHHHHHHh-cEEEecCCc
Confidence 455677777777655 6778999884 33443433322211 10 11232 3333443333 122233566
Q ss_pred EEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCc
Q 005551 206 FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGE 267 (691)
Q Consensus 206 F~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~-~~~Gg 267 (691)
++. ..+ .--++|.|+.+.++.++... +.+....+++++||.+.-. ++.|.
T Consensus 299 ~~~-~~~--------~s~~wDTala~~AL~~ag~~---~~~~~~l~ka~~wL~~~Q~~~~~gd 349 (634)
T cd02892 299 KMC-QTN--------GSQVWDTALAVQALLEAGLA---PEFDPALKKALDWLLESQILDNPGD 349 (634)
T ss_pred EEE-cCC--------CCchHHHHHHHHHHHHcCCC---ccchHHHHHHHHHHHHHHcCCCCCc
Confidence 542 211 11489999999999997432 3677889999999988543 44453
No 69
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=94.28 E-value=0.47 Score=49.38 Aligned_cols=155 Identities=18% Similarity=0.257 Sum_probs=97.4
Q ss_pred hhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC----------ChHHHHHHHHHHHHHHHHhcc
Q 005551 373 VRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS----------DRKEYMEVAESAASFIRRHLY 442 (691)
Q Consensus 373 ~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~----------~~~~~l~~A~~~~~~l~~~~~ 442 (691)
.|..|..|.+.+.|++.||-.|-.++.+=.+- .-||.|.-|+ +-.++|+.|-+.++|+.+++.
T Consensus 111 vr~~~alp~l~~~~v~Gw~D~~gGg~pWR~q~-------~f~N~P~NgPa~I~~ar~~~~~~krL~~AMK~~dWi~~~Li 183 (377)
T COG4833 111 VRRRRALPKLTNQFVEGWVDEDGGGIPWRKQD-------QFFNAPANGPAGIFLARYPDQYGKRLKRAMKMADWIDRTLI 183 (377)
T ss_pred eeccccchhHHHhhhhccccccCCcccccccc-------eeecCCCCCcceEEEeechHHHHHHHHHHHHHHHHHHhhcc
Confidence 45566778888899999987765555443211 1223332221 113699999999999999999
Q ss_pred ccCCCeEEEE---ecCCCCCC-CCCcccHHHH--HHHHHHHHH-HcCChHHHHHHHHHHHHHHHhcccccCCccccCCC-
Q 005551 443 DEQTHRLQHS---FRNGPSKA-PGFLDDYAFL--ISGLLDLYE-FGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG- 514 (691)
Q Consensus 443 d~~~g~l~~~---~~~g~~~~-~~~l~DyA~l--i~all~Ly~-~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~- 514 (691)
++ +|.++.. ..+|.... ..+.+-+... +++-|+||+ .+...+|+..+.++.....++... -|-+-+..+
T Consensus 184 d~-DGlV~DGi~~ledGt~lvr~~~tYcQGV~IGle~~L~Lr~~~a~~A~Y~a~~h~~vaav~~~mT~--~Gv~~~e~gg 260 (377)
T COG4833 184 DP-DGLVFDGIKALEDGTSLVRAQYTYCQGVVIGLETELALRTGPAARARYCARVHRLVAAVNEHMTP--LGVLRGEAGG 260 (377)
T ss_pred CC-CcchhhhhhhhccCchhheeeccccceeEeechhhhhhhcCchHHHHHHHHHHHHHHHHHHhcCc--cceeecCCCC
Confidence 96 4644322 12443322 2333333333 458899999 788889999999999999999853 244433222
Q ss_pred CCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005551 515 EDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 551 (691)
Q Consensus 515 ~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~ 551 (691)
.|+.++ -++.+.-|.-+..-+.+
T Consensus 261 GDgGLF--------------KGI~~RYlaDva~~lp~ 283 (377)
T COG4833 261 GDGGLF--------------KGITARYLADVATTLPG 283 (377)
T ss_pred Cccchh--------------hhHHHHHHHHHHHhcCC
Confidence 233332 25777777777776654
No 70
>PLN02171 endoglucanase
Probab=92.78 E-value=7.2 Score=46.14 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=63.6
Q ss_pred cCCCCC---CCCCCCChh--HHHHHH-HhHhhhcccCCCCCcHHHHHHHHHHHHHHHh-----CCCcccCCCcEEEEEcC
Q 005551 144 RFGGFG---SAPKFPRPV--EIQMML-YHSKKLEDTGKSGEASEGQKMVLFTLQCMAK-----GGIHDHVGGGFHRYSVD 212 (691)
Q Consensus 144 ~~GGfg---~apKFP~~~--~l~~Ll-~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~-----GGi~D~v~GGF~RYsvD 212 (691)
.-|||- .--||=.|+ ....|+ .+......-.....-+.+++.+..-++-|.. +++|-|||.| .+|
T Consensus 74 lsGGwyDAGD~vKf~~p~a~s~t~L~w~~~e~~~~~~~~g~~~~~Ldeikw~~Dyllk~~~~~~~~y~qVgdg----~~D 149 (629)
T PLN02171 74 LVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAAAGELGHAMDAVKWGTDYFIKAHPEPNVLYGEVGDG----DTD 149 (629)
T ss_pred CCCCceeCCCCceeccchHHHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHHHHhccCCCeEEEEeCCC----Ccc
Confidence 458984 446775553 333333 2211111000111235788888888887765 3344444433 123
Q ss_pred C-CCCCCCCchh---HH----------HHHHHHHHHHHHHHccCC--h----HHHHHHHHHHHHHHH
Q 005551 213 E-RWHVPHFEKM---LY----------DQGQLANVYLDAFSLTKD--V----FYSYICRDILDYLRR 259 (691)
Q Consensus 213 ~-~W~vPHfEKm---Ly----------dnA~ll~~ya~Ay~~tg~--~----~y~~~A~~~~~~l~~ 259 (691)
. -|..|+-.++ +| --+..+.+++.|+++.++ + .+++.|+++.+|..+
T Consensus 150 H~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~ 216 (629)
T PLN02171 150 HYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFRRSNPGYANELLTHAKQLFDFADK 216 (629)
T ss_pred ccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHh
Confidence 3 3777853321 12 256788889999999874 4 457788888888876
No 71
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=92.17 E-value=3.3 Score=49.01 Aligned_cols=133 Identities=13% Similarity=0.106 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC--C-CCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-
Q 005551 427 MEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK--A-PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF- 501 (691)
Q Consensus 427 l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~~--~-~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F- 501 (691)
.+.|++..+|+.+.... +|.+++. +-+|... . ...++.++..+.++..++..|+|..+++.--...+.+.+..
T Consensus 313 ~~~a~~~l~~l~~~q~~--~G~~~~~~~~dG~~~~~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~ 390 (616)
T TIGR01577 313 HDRVDRFFRWAMQTQSR--DGSWQQRYYLNGRLAPLQWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLI 390 (616)
T ss_pred HHHHHHHHHHHHHhhCc--CCCcceEEecCCCCCCCCCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 46888889999887654 5776776 4577654 2 45667799999999999999999887665544444444433
Q ss_pred --ccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHh---CCCC-chHHHHHHHHHHHHHHHH
Q 005551 502 --LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV---AGSK-SDYYRQNAEHSLAVFETR 571 (691)
Q Consensus 502 --~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt---~~~~-~~~y~~~A~~~l~~~~~~ 571 (691)
+++ +. .. .+.. .++...+..+..+++...+|.+.+.+. |+.. ...|++.|+++-+.+...
T Consensus 391 ~~~~~--~l-~~---~~~~----lWEer~G~~~~t~a~~~aAL~~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~~ 456 (616)
T TIGR01577 391 LFIDP--ET-PL---PCRD----LWEEREGVFTYTASAVYGGLDAAAAVADKLGEKRLAQNWKKAAEFIKRAVEER 456 (616)
T ss_pred HhccC--CC-CC---CCCc----cceecCCccCccHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHh
Confidence 222 11 11 1111 112223456777777666666655554 4321 135666676666555433
No 72
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=92.12 E-value=1.3 Score=50.48 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcccc-CCCCCCccccccccCCCCCCCChHHHHHHH-----
Q 005551 468 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN-TTGEDPSVLLRVKEDHDGAEPSGNSVSVIN----- 541 (691)
Q Consensus 468 A~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~-~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~----- 541 (691)
--++-||+.+|..|||+-|+++|.++.+.++..|--+ +|--+. +....+. .+.. -++ -.+.|+.+..
T Consensus 265 irF~GGllsay~lsge~~f~~kA~~igdkLLpAfntp-tGIp~~~vn~ksG~--~~n~---~wa-sgg~SILaE~gtlhl 337 (625)
T KOG2204|consen 265 IRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTP-TGIPKALVNNKSGD--ADNY---GWA-SGGSSILAEFGTLHL 337 (625)
T ss_pred eeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCC-CCCchhhhccccCc--cCCc---ccc-cCcchHhhhcCceee
Confidence 3457899999999999999999999999999998554 442222 1111110 1111 111 1123455543
Q ss_pred -HHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 005551 542 -LVRLASIVAGSKSDYYRQNAEHSLAVFE 569 (691)
Q Consensus 542 -LlrL~~lt~~~~~~~y~~~A~~~l~~~~ 569 (691)
...|+.++|. +.|.++..+|-..+-
T Consensus 338 ef~~LS~ltg~---P~~~ekv~~IRk~l~ 363 (625)
T KOG2204|consen 338 EFSYLSKLTGN---PTFAEKVVKIRKVLN 363 (625)
T ss_pred ehHHhhhccCC---chHHHHHHHHHHHHH
Confidence 6778888886 789999888777654
No 73
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=91.98 E-value=5 Score=48.36 Aligned_cols=148 Identities=20% Similarity=0.305 Sum_probs=100.4
Q ss_pred chhhchHHH--HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC
Q 005551 385 KVIVSWNGL--VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG 462 (691)
Q Consensus 385 kilt~WNal--~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~ 462 (691)
+-+-+.+|+ .+.||..-+.+++| ....+.|.+....|...... ...+.
T Consensus 690 ~~iga~~G~~g~~yal~~I~~~~~~----------------~~l~~~~~~~i~~le~~v~~--------------~~~~d 739 (963)
T COG4403 690 INIGAFTGLSGYFYALWKIYSVTRD----------------NYLIQSAENSIRHLEILVQK--------------SKDPD 739 (963)
T ss_pred cccccccccchhhhhhHHHHHhccc----------------HHHHHHHHHHHHHHHHHHhh--------------ccCcc
Confidence 444455555 47789899999887 56677777777654433221 12246
Q ss_pred CcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHH
Q 005551 463 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 542 (691)
Q Consensus 463 ~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~L 542 (691)
+...-|=++..|+.+|..|.++++++.|..+.+.+.+.....++ .+.+..-. --++|-.+..|
T Consensus 740 ~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gf--------shg~sgi~~tL 802 (963)
T COG4403 740 FINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDS---------SETVLLGF--------SHGASGIILTL 802 (963)
T ss_pred hhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcccc---------ccceeccc--------ccchHHHHHHH
Confidence 66777888999999999999999999999999999877643222 11111111 12556667789
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 005551 543 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCA 585 (691)
Q Consensus 543 lrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~~~~a 585 (691)
+.|++.||+ +.+.+.+.+++..=..+.... .+.|++.
T Consensus 803 ~~ly~~T~e---~~l~~~i~e~~~~Er~~f~~~---~~~Wc~g 839 (963)
T COG4403 803 LKLYEATGE---ESLLKKIKELLSYERMKFSDK---FTRWCSG 839 (963)
T ss_pred HHHHHhcCc---HHHHHHHHHHHHHHHHHHHHH---HHHHhcC
Confidence 999999996 788888888887654444442 5556543
No 74
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=91.86 E-value=0.15 Score=59.63 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=52.9
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeec---cccCCCCCCCCc
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG---TYFPPEDKYGRP 77 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~g---TY~P~~~~~g~~ 77 (691)
|++..|+|++|++.++ +|+-+|||.++..+-++-+++ . -|--|.|..+|++|||+++-.. .|.+++
T Consensus 492 ~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~---~-~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~------ 560 (571)
T PRK00293 492 FEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLK---H-YNVLGLPTILFFDAQGQEIPDARVTGFMDAA------ 560 (571)
T ss_pred HHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHH---H-cCCCCCCEEEEECCCCCCcccccccCCCCHH------
Confidence 5677899999999997 699999998876443332222 2 2667899999999999985322 244433
Q ss_pred cHHHHHHHH
Q 005551 78 GFKTILRKV 86 (691)
Q Consensus 78 gf~~~L~~i 86 (691)
.|.+.|+++
T Consensus 561 ~f~~~L~~~ 569 (571)
T PRK00293 561 AFAAHLRQL 569 (571)
T ss_pred HHHHHHHHh
Confidence 477776654
No 75
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=91.81 E-value=14 Score=44.14 Aligned_cols=160 Identities=9% Similarity=0.005 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhcccc-cCCCCCCCCCCCCh
Q 005551 79 FKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDS-RFGGFGSAPKFPRP 157 (691)
Q Consensus 79 f~~~L~~i~~~w~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~-~~GGfg~apKFP~~ 157 (691)
..+........-...-+.+.+.-..--+ +-.... ...+. .-.+.+...+-.|+...|. ..|++=-+|.+|.|
T Consensus 209 ~~~a~~~~~~~l~~g~~~~~~~~~~~W~---~w~~~~---~~~~~-~~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~p 281 (648)
T TIGR01535 209 AYEAAKTAVATLKEGYRRVKDAYIDEWE---KYLNSL---NNFNG-KGNSLYYVSMMILKAHEDKTNPGAYIASLSIPWG 281 (648)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---HHHhcc---ccCCc-hHHHHHHHHHHHHHHhcCCCCCCcEEEecCCCCC
Confidence 4555555555555566665554333222 222111 01111 1245566666678888888 45999889988865
Q ss_pred hHH----------------HHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCc-EEEEEcCCCCCCCCC
Q 005551 158 VEI----------------QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG-FHRYSVDERWHVPHF 220 (691)
Q Consensus 158 ~~l----------------~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GG-F~RYsvD~~W~vPHf 220 (691)
... .+........+ . .+.+.+.....++.... .|. .++|.+|.....+
T Consensus 282 e~~g~~~n~dYryvW~RD~a~~a~AL~~~G---~---~~~a~~~~~~l~~~~~~-------~G~~lq~y~vdG~~~~~-- 346 (648)
T TIGR01535 282 DGQADDNTGGYHLVWPRDLYQVANAFLAAG---D---VDSALRSLDYLAKVQQD-------NGMFPQNSWVDGKPYWT-- 346 (648)
T ss_pred ccCCCCCCCceEEEehhhHHHHHHHHHHCC---C---HHHHHHHHHHHHHHhcc-------CCCcCceeccCCCCCCC--
Confidence 321 11111111111 1 13444444444433332 333 6789999876554
Q ss_pred chhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhc
Q 005551 221 EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDM 261 (691)
Q Consensus 221 EKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m 261 (691)
|..|-.-|.+|.+....++... ..|...++.+++||.+..
T Consensus 347 ~iQlD~~g~~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 347 GIQLDETAFPILLAYRLHRYDH-AFYDKMLKPAADFIVKNG 386 (648)
T ss_pred CccccHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHcC
Confidence 5777778888887777777543 678889999999999864
No 76
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=91.12 E-value=28 Score=41.51 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC-CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccc
Q 005551 426 YMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP-GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 503 (691)
Q Consensus 426 ~l~~A~~~~~~l~~~~~d~~~g~l~~~~-~~g~~~~~-~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D 503 (691)
+.+.|++.++||.+.... +|.+++.| -+|++... -.+|-|++.|.++..+++... ..+....+.+++.+..+- .
T Consensus 312 ~~~~a~~~~~~l~~~~~~--~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~~-p 387 (648)
T TIGR01535 312 DVDSALRSLDYLAKVQQD--NGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDH-AFYDKMLKPAADFIVKNG-P 387 (648)
T ss_pred CHHHHHHHHHHHHHHhcc--CCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHcC-C
Confidence 357889999999888764 46666664 58877544 567778999999988888543 556666777777776642 2
Q ss_pred ccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHh---CCCC-chHHHHHHHHHHHHHH
Q 005551 504 REGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV---AGSK-SDYYRQNAEHSLAVFE 569 (691)
Q Consensus 504 ~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt---~~~~-~~~y~~~A~~~l~~~~ 569 (691)
...-+. ++..-+..|+..|....+|.+.+.+. |... ...|++.|+++-+.+.
T Consensus 388 ~p~~d~--------------WEer~g~~~~T~a~v~aaL~~Aa~iA~~~g~~~~a~~w~~~Ad~i~~~i~ 443 (648)
T TIGR01535 388 KTGQER--------------WEEIGGYSPSTLAAEIAGLTAAADIAEQNGDAGSAQKYRETADNWQKLIE 443 (648)
T ss_pred CCCCCc--------------ccccCCcCchhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 111111 22223445666665556666665555 3321 1346666665544443
No 77
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=90.44 E-value=2.2 Score=48.08 Aligned_cols=114 Identities=15% Similarity=0.217 Sum_probs=64.1
Q ss_pred ccCCCCCC---CCCCCCh--hHHHHH-HHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCC---
Q 005551 143 SRFGGFGS---APKFPRP--VEIQMM-LYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE--- 213 (691)
Q Consensus 143 ~~~GGfg~---apKFP~~--~~l~~L-l~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~--- 213 (691)
...|||-. --||-.+ .....| |.++...........-+.+++.+...++-|.+ +++. .|+|+. .|..
T Consensus 51 DlsGGW~DAGD~~Ky~~~~a~s~~~L~~~~~e~~~~~e~~~~~~dllde~kwg~D~llk--m~~~-~~~~~~-qvgdg~~ 126 (444)
T PF00759_consen 51 DLSGGWYDAGDYGKYTFPMAYSVTMLAWSAYEFFPAYESGNGIPDLLDEAKWGLDWLLK--MQDS-DGTFYA-QVGDGGV 126 (444)
T ss_dssp B---SB-SSSSS-EEHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH--TBSC-TTEEEE-EESTHHH
T ss_pred cccCceeecCCcceecccHHHHHHHHHHHHHHhHHHhhcCCcHHHHHHHHHHHHHHHHh--ccCC-CCceee-eccCccc
Confidence 45699944 4576444 333344 44432221110112357899999999998887 6655 333442 3211
Q ss_pred ---CCCCC----C--------Cch-hHHHHHHHHHHHHHHHHccCC------hHHHHHHHHHHHHHHHh
Q 005551 214 ---RWHVP----H--------FEK-MLYDQGQLANVYLDAFSLTKD------VFYSYICRDILDYLRRD 260 (691)
Q Consensus 214 ---~W~vP----H--------fEK-mLydnA~ll~~ya~Ay~~tg~------~~y~~~A~~~~~~l~~~ 260 (691)
-|.-| + ..+ ----.+..+.+++.|+++.++ ..|++.|++..+|...+
T Consensus 127 ~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~~~ 195 (444)
T PF00759_consen 127 DHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKDFDPAYAAQCLKAAKEAYAFAKKN 195 (444)
T ss_dssp HHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhC
Confidence 14322 2 122 233367888999999999876 46778889999998763
No 78
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=90.34 E-value=30 Score=38.36 Aligned_cols=113 Identities=14% Similarity=0.046 Sum_probs=69.1
Q ss_pred HHHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCC---cccCCCcEEEEEc---CCCCCCCC---------CchhH
Q 005551 160 IQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI---HDHVGGGFHRYSV---DERWHVPH---------FEKML 224 (691)
Q Consensus 160 l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi---~D~v~GGF~RYsv---D~~W~vPH---------fEKmL 224 (691)
+..+-.|.+.++|. .--++....+...|+.+..|.- +=+...||..... ...|..-+ --|-+
T Consensus 90 l~~l~~Y~~~t~D~---~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~~v 166 (370)
T PF06202_consen 90 LIALQEYYRWTGDY---SFLRELYPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGLNNQTWMDARNDGRPVTPRDGAAV 166 (370)
T ss_pred HHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHhCCCCccccccCCCeeecCCCCCCCCccccccCCccccCCCCcch
Confidence 44555666665431 1123445566677888888533 2222467775332 35675422 22556
Q ss_pred HHHHHHHHHHHHHHHcc---CC---hHHHHHHHHHHHHHHHhccCCCCceee-eccCC
Q 005551 225 YDQGQLANVYLDAFSLT---KD---VFYSYICRDILDYLRRDMIGPGGEIFS-AEDAD 275 (691)
Q Consensus 225 ydnA~ll~~ya~Ay~~t---g~---~~y~~~A~~~~~~l~~~m~~~~Ggfys-a~DAD 275 (691)
--||+...++..+-.+. ++ ..|++.|+++-+=+.+.+++++.|||. +.|.+
T Consensus 167 EIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~ 224 (370)
T PF06202_consen 167 EIQALWYNALRFAAELAEKFGDELAARYREWAERLKESFEKRFWDEDRGYYADALDGD 224 (370)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence 56888877765544433 23 588889999998889999998877765 66654
No 79
>PLN02340 endoglucanase
Probab=89.86 E-value=43 Score=39.70 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=63.2
Q ss_pred cCCCC---CCCCCCCChhHH--H-HHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHh-----CCCcccCCCc-EEEEEc
Q 005551 144 RFGGF---GSAPKFPRPVEI--Q-MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAK-----GGIHDHVGGG-FHRYSV 211 (691)
Q Consensus 144 ~~GGf---g~apKFP~~~~l--~-~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~-----GGi~D~v~GG-F~RYsv 211 (691)
.-||| |.--||=.|+.+ . +++-+......-.....-+.+++.+..-++-|.. +.+|-|||-| ..-
T Consensus 74 lsGGwyDAGD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk~~~~~~~~~~qVGdg~~DH--- 150 (614)
T PLN02340 74 LVGGYYDAGDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIKAHTQPNVLWGQVGDGDSDH--- 150 (614)
T ss_pred CCCCceeCCCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCccc---
Confidence 45898 445687666432 2 2332222211111122357889999999988876 2233344322 111
Q ss_pred CCCCCCCCCchhHH---------------HHHHHHHHHHHHHHccCC--hH----HHHHHHHHHHHHHH
Q 005551 212 DERWHVPHFEKMLY---------------DQGQLANVYLDAFSLTKD--VF----YSYICRDILDYLRR 259 (691)
Q Consensus 212 D~~W~vPHfEKmLy---------------dnA~ll~~ya~Ay~~tg~--~~----y~~~A~~~~~~l~~ 259 (691)
..|..| |+|-. .-|..+.+++.|+++.++ +. +++.|+++.+|..+
T Consensus 151 -~~W~~P--E~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk~~D~~YA~~lL~~Ak~ly~fA~~ 216 (614)
T PLN02340 151 -YCWERA--EDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAFKPYNSSYSDLLLVHAKQLFSFADK 216 (614)
T ss_pred -ccCCCh--hhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 146655 33322 236778889999999874 44 57788888888876
No 80
>PLN02308 endoglucanase
Probab=89.77 E-value=40 Score=38.88 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=64.9
Q ss_pred cCCCC---CCCCCCCChhHHH--HHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCC-----
Q 005551 144 RFGGF---GSAPKFPRPVEIQ--MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE----- 213 (691)
Q Consensus 144 ~~GGf---g~apKFP~~~~l~--~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~----- 213 (691)
..||| |.--||-.|..+. +|+.......+. ...+.+.+++.+..-++-|.+ .++. .|+||. .|..
T Consensus 72 lsGGWyDAGD~~Ky~~p~a~s~t~L~w~~~e~~~~-~~~e~~~~ldeikw~~D~llk--m~~~-~~~vy~-qVg~~~~dh 146 (492)
T PLN02308 72 LTGGYYDAGDNVKFGFPMAFTTTLMSWSIIDFGRT-MGPELENAVKAVKWATDYLMK--ATAI-PNVVYV-QVGDAYSDH 146 (492)
T ss_pred CCCCceeCCCcCeecCchHHHHHHHHHHHHHhHhh-hcchhHHHHHHHHHHHHHHHH--hcCC-CCeEEE-EecCCCCCc
Confidence 46999 4456877764332 222211111111 012346788889999988876 3432 355553 4433
Q ss_pred -CCCCCCCchh---HH----------HHHHHHHHHHHHHHccC--ChH----HHHHHHHHHHHHHH
Q 005551 214 -RWHVPHFEKM---LY----------DQGQLANVYLDAFSLTK--DVF----YSYICRDILDYLRR 259 (691)
Q Consensus 214 -~W~vPHfEKm---Ly----------dnA~ll~~ya~Ay~~tg--~~~----y~~~A~~~~~~l~~ 259 (691)
.|..|+-.++ +| --+..+.+++.|+++.+ |+. +++.|++..+|..+
T Consensus 147 ~~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~~~D~~YA~~lL~~Ak~ly~fa~~ 212 (492)
T PLN02308 147 NCWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFRKRDPAYSRLLLDRAVRVFAFADK 212 (492)
T ss_pred cCCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 4566644211 11 24677889999999988 555 56778888888877
No 81
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=89.43 E-value=29 Score=41.41 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhc------------ccccCCCCCCC--CC-CCChh----HHHHHHHhHhhhcccCCCCCcHHHHHHHHH
Q 005551 128 NALRLCAEQLSKS------------YDSRFGGFGSA--PK-FPRPV----EIQMMLYHSKKLEDTGKSGEASEGQKMVLF 188 (691)
Q Consensus 128 ~~~~~~~~~l~~~------------~D~~~GGfg~a--pK-FP~~~----~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 188 (691)
..+.++.+.|.+. -+...||||-. +. +|... .|..|+... . .. ......+.+-+..
T Consensus 336 p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~-~-~~---~~~~~~~i~ra~~ 410 (635)
T TIGR01507 336 DALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLR-L-PD---ERRRRDAMTKAFR 410 (635)
T ss_pred HHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcC-C-Cc---cccchHHHHHHHH
Confidence 3567777777655 23467998875 66 45532 333333221 0 00 0111234444444
Q ss_pred HHHHHHhCCCcccCCCcEEEEEcCCCC----CCCCCc---hhH-----HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005551 189 TLQCMAKGGIHDHVGGGFHRYSVDERW----HVPHFE---KML-----YDQGQLANVYLDAFSLTKDVFYSYICRDILDY 256 (691)
Q Consensus 189 TL~~m~~GGi~D~v~GGF~RYsvD~~W----~vPHfE---KmL-----ydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~ 256 (691)
-|-.|.. -+|||--|..+... ++| |. .|+ -..|..+.+|... +...-...++++++|
T Consensus 411 wLl~~Qn------~dGgw~af~~~~~~~~l~~~~-f~d~~~~~D~~~~d~Ta~~l~al~~~----g~~~~~~~i~rav~~ 479 (635)
T TIGR01507 411 WIAGMQS------SNGGWGAFDVDNTSDLLNHIP-FCDFGAVTDPPTADVTARVLECLGSF----GYDDAWPVIERAVEY 479 (635)
T ss_pred HHHHhcC------CCCCEecccCCcchhHHhcCC-ccccccccCCCCccHHHHHHHHHHHh----CCCchhHHHHHHHHH
Confidence 4455544 47888766544432 234 22 222 1267888888764 222226788999999
Q ss_pred HHHhccCCCCceee
Q 005551 257 LRRDMIGPGGEIFS 270 (691)
Q Consensus 257 l~~~m~~~~Ggfys 270 (691)
|++ ++.++||+|.
T Consensus 480 L~~-~Q~~dG~W~g 492 (635)
T TIGR01507 480 LKR-EQEPDGSWFG 492 (635)
T ss_pred HHH-ccCCCCCCcc
Confidence 987 5688998864
No 82
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=89.12 E-value=28 Score=35.48 Aligned_cols=128 Identities=14% Similarity=0.015 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCCC--CChhHHHHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCC
Q 005551 126 PQNALRLCAEQLSKSYDSRFGGFGSAPKF--PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 203 (691)
Q Consensus 126 ~~~~~~~~~~~l~~~~D~~~GGfg~apKF--P~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~ 203 (691)
....+++++..|.+.. ...|||+..+.- |.+..-.+.+......+..+ ....+.+.+.++-+... ....
T Consensus 50 ~~~~~~~~~~~l~~~q-~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~---q~~d 120 (300)
T cd00688 50 ADENIEKGIQRLLSYQ-LSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYI-----AVDRIDLARALNWLLSL---QNED 120 (300)
T ss_pred chHHHHHHHHHHHhcc-CCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcc-----ccCHHHHHHHHHHHHHc---cCCC
Confidence 3456777788887654 457999887653 33322222221111111000 11223344444444442 3346
Q ss_pred CcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 005551 204 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 268 (691)
Q Consensus 204 GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggf 268 (691)
|||..+.-... ..++-+.-....+..+.+++.+..... ...+.++++||.+.. .++|||
T Consensus 121 G~~~~~~~~~~-~~~~~~~~~~~t~~al~aL~~~~~~~~----~~~~~~~~~~l~~~q-~~~g~~ 179 (300)
T cd00688 121 GGFREDGPGNH-RIGGDESDVRLTAYALIALALLGKLDP----DPLIEKALDYLLSCQ-NYDGGF 179 (300)
T ss_pred CCeeeecCCCC-cccCCCCcccHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHh-cCCCCc
Confidence 77764332111 012234455668888888877665443 567889999998865 567877
No 83
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=88.99 E-value=1.9 Score=46.50 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=87.5
Q ss_pred HHHHHHHHHHH-HHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC-CCCCCcccHHH
Q 005551 392 GLVISSFARAS-KILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-KAPGFLDDYAF 469 (691)
Q Consensus 392 al~i~aLa~a~-~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~-~~~~~l~DyA~ 469 (691)
+=++.+|++++ +.+++ +++.+.++++.+++.++....+++ +......... ...+....-+=
T Consensus 170 ~Gi~~~L~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~WC~G~~G 232 (355)
T PF05147_consen 170 AGILYALLRLYKKGTKD----------------PEYLKLIEQILNFLLKHFNTDDGG-WPDNRNNSNYKSRPSWCYGSPG 232 (355)
T ss_dssp HHHHHHHCHCCHHT--H----------------HHHHHCHHHHHHHHHHC--TGCCT---SECTHHHHHC--SSSSSHHH
T ss_pred HHHHHHHHHhhhcccCc----------------hhHHHHHHHHHHHHHHhcCcccCC-CCCCCCccccccccccccCcHH
Confidence 45788888998 68877 899999999999999988653334 3221111100 03466666677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHh
Q 005551 470 LISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV 549 (691)
Q Consensus 470 li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt 549 (691)
.+.+++.+++..+++.+.+.+.++.+.+.+.-. +.. +...--|.+=.+..|..++..+
T Consensus 233 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----------------~~~lCHG~aG~~~~l~~~~~~~ 290 (355)
T PF05147_consen 233 ILLALLKAYKILDDEEYDEEAEQALESILQKGL------FLN----------------NPSLCHGTAGILEILLDLYKYT 290 (355)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T------CTT----------------SS-STTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHccc------cCC----------------CCceeCchHHhHHHHHHHHHHc
Confidence 888999999999999999999998888766310 010 1112235566777789999999
Q ss_pred CCCCchHHHHHHHHHHHHHH
Q 005551 550 AGSKSDYYRQNAEHSLAVFE 569 (691)
Q Consensus 550 ~~~~~~~y~~~A~~~l~~~~ 569 (691)
+. +.|.+.++++++.+.
T Consensus 291 ~~---~~~~~~~~~~~~~~~ 307 (355)
T PF05147_consen 291 GD---EEYKELANKLIQKLL 307 (355)
T ss_dssp -----HCCHHHHHHHHHHHC
T ss_pred CC---HHHHHHHHHHHHHHH
Confidence 85 568888887755543
No 84
>PLN02993 lupeol synthase
Probab=88.62 E-value=4.3 Score=48.93 Aligned_cols=83 Identities=11% Similarity=0.183 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCC--CCC--CC---CCchhHHH------HHHHHHHHHHHHHccC---Ch
Q 005551 181 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE--RWH--VP---HFEKMLYD------QGQLANVYLDAFSLTK---DV 244 (691)
Q Consensus 181 ~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~--~W~--vP---HfEKmLyd------nA~ll~~ya~Ay~~tg---~~ 244 (691)
+++.-+...|-.|.. -+|||.-|-.|+ .|. +| ||...+.| -+..+.+++....... .+
T Consensus 513 ~~l~~av~wlL~mQn------~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ 586 (763)
T PLN02993 513 EQLYDSVNLLLSLQS------ENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTK 586 (763)
T ss_pred HHHHHHHHHHHhhcc------CCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhh
Confidence 444444455555554 269999998766 675 55 45455444 4555565554322221 13
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceee
Q 005551 245 FYSYICRDILDYLRRDMIGPGGEIFS 270 (691)
Q Consensus 245 ~y~~~A~~~~~~l~~~m~~~~Ggfys 270 (691)
.....++++++||++. +.++|+||.
T Consensus 587 ei~~~i~rAv~yL~~~-Q~~DGSW~G 611 (763)
T PLN02993 587 EIIKSIEKAVQFIESK-QTPDGSWYG 611 (763)
T ss_pred hHHHHHHHHHHHHHHh-cCCCCCccc
Confidence 3456889999999875 678898873
No 85
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=88.50 E-value=62 Score=38.62 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=41.5
Q ss_pred cCCCcEEEEEc-CCCCCCCCCchhHHHHHHHHHHHHHHHHccC---ChHHHHHHHHHHHHHHHhccCCCCceee
Q 005551 201 HVGGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK---DVFYSYICRDILDYLRRDMIGPGGEIFS 270 (691)
Q Consensus 201 ~v~GGF~RYsv-D~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg---~~~y~~~A~~~~~~l~~~m~~~~Ggfys 270 (691)
.-.||+. |+. +..|.+ .-|-|..+.+...+..... ++...+..+++++||++ |++++|||.+
T Consensus 356 ~~~GGW~-f~~~~~~~pd------sD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~-~Qn~dGGw~~ 421 (634)
T TIGR03463 356 PAKGGWC-FSDGDHGWPV------SDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILS-RQNEDGGFGT 421 (634)
T ss_pred CCCCccc-cccCCCCCCc------cccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHH-hcCCCCCEec
Confidence 3467776 553 555533 4567878888776644322 12445788999999996 7889999965
No 86
>PLN02909 Endoglucanase
Probab=88.25 E-value=28 Score=40.03 Aligned_cols=113 Identities=12% Similarity=0.189 Sum_probs=65.5
Q ss_pred cCCCC---CCCCCCCChhHH--HH-HHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEc-----C
Q 005551 144 RFGGF---GSAPKFPRPVEI--QM-MLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV-----D 212 (691)
Q Consensus 144 ~~GGf---g~apKFP~~~~l--~~-Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsv-----D 212 (691)
..||| |.--||-.|... .. ++.+......-.....-+.+++.+..-++-|.+ .++. .|+||. -| |
T Consensus 78 lsGGwyDAGD~~Kf~~p~a~s~~~L~w~~~~y~~~~~~~g~~~d~ldeikw~~D~llk--~~~~-~~~~y~-qVg~~~~D 153 (486)
T PLN02909 78 LVGGYYDAGDNVKYGLPMAFTVTTLAWSTLAYEKELRATGELENVRAAIRWGTDYFLK--AASR-KNRLYV-QVGDPNLD 153 (486)
T ss_pred CCCCceeCCCCceeCCchHHHHHHHHHHHHHhHHHHhhcCChHHHHHHHHHHHHHHHH--hccC-CCeEEE-EeCCCCCC
Confidence 45999 445687666432 22 322221111001112357889999988887765 3332 344442 32 3
Q ss_pred C-CCCCCCCchh---HHH----------HHHHHHHHHHHHHccCC--h----HHHHHHHHHHHHHHHh
Q 005551 213 E-RWHVPHFEKM---LYD----------QGQLANVYLDAFSLTKD--V----FYSYICRDILDYLRRD 260 (691)
Q Consensus 213 ~-~W~vPHfEKm---Lyd----------nA~ll~~ya~Ay~~tg~--~----~y~~~A~~~~~~l~~~ 260 (691)
. .|..|+-.++ +|- -+..+.+++.|+++.++ + .+++.|+++.+|..++
T Consensus 154 h~~W~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~ 221 (486)
T PLN02909 154 HQCWVRPENMKTPRTVLEIDEKTPGTEIAAETAAAMAASSMVFRHVDHKYSRRLLNKAKLLFKFAKAH 221 (486)
T ss_pred cccCCChhhccCCceeEecCCCCCCcHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3 4666643211 221 56778889999999874 4 4678889999999874
No 87
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=88.09 E-value=16 Score=39.55 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHhccc------------cCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHHcC--ChHHHHHH
Q 005551 425 EYMEVAESAASFIRRHLYD------------EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS--GTKWLVWA 490 (691)
Q Consensus 425 ~~l~~A~~~~~~l~~~~~d------------~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tg--d~~~L~~A 490 (691)
++-+..+++.+||.++... ..+|++-.....+ .....++-++++.+|+.+...+. +..+.+..
T Consensus 43 ~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~---~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i 119 (348)
T cd02889 43 EFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQ---GYPDSDDTAEALKALLRLQKKPPDGKKVSRERL 119 (348)
T ss_pred ccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCC---CCCCCCChHHHHHHHHHhhccCcccchhhHHHH
Confidence 4667888999999987631 1122221111110 01224588999999999988873 46667777
Q ss_pred HHHHHHHHHhcccccCCccccCCC-CCCccc-----cccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 005551 491 IELQNTQDELFLDREGGGYFNTTG-EDPSVL-----LRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHS 564 (691)
Q Consensus 491 ~~L~~~~~~~F~D~~~Gg~f~~~~-~~~~l~-----~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~ 564 (691)
.+..+.+..... .+|+|..... ...... .......|...++..+..+..|..+....... ...+.+.+++.
T Consensus 120 ~~a~~~L~~~Q~--~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~i~~a 196 (348)
T cd02889 120 YDAVDWLLSMQN--SNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEH-RREIDPAIRRA 196 (348)
T ss_pred HHHHHHHHHhcc--CCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCch-HHHHHHHHHHH
Confidence 777777776643 2566642211 100000 00011123344556666667777666543211 12355666777
Q ss_pred HHHHHHHH
Q 005551 565 LAVFETRL 572 (691)
Q Consensus 565 l~~~~~~i 572 (691)
++.+....
T Consensus 197 ~~~L~~~q 204 (348)
T cd02889 197 VKYLEREQ 204 (348)
T ss_pred HHHHHHhC
Confidence 77765543
No 88
>PLN03009 cellulase
Probab=87.64 E-value=61 Score=37.50 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=68.3
Q ss_pred cCCCC---CCCCCCCChhHH---HHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEEEEEc-----C
Q 005551 144 RFGGF---GSAPKFPRPVEI---QMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV-----D 212 (691)
Q Consensus 144 ~~GGf---g~apKFP~~~~l---~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsv-----D 212 (691)
.-||| |.--||-.|..+ .+++.+.... +.-...+-+.+++.+..-++-|.. .++. .|+|| +-| |
T Consensus 72 lsGGwyDAGD~~Ky~~p~a~s~~~L~w~~~~f~-d~~~~~~~~diLdeikw~~D~llk--m~~~-~~~~y-~qVg~~~~D 146 (495)
T PLN03009 72 LTGGYYDAGDNVKFGFPMAFTTTMLAWSVIEFG-DLMPSSELRNSLVAIRWATDYLLK--TVSQ-PNRIF-VQVGDPIAD 146 (495)
T ss_pred CCCcceeCCCCceeccchHHHHHHHHHHHHHhH-hhCCccccHHHHHHHHHHHHHHHH--cccC-cCeEE-EEeCCCCCC
Confidence 45999 445688776433 2333332221 111123457889999998888776 4443 46666 355 3
Q ss_pred -CCCCCCCCchh---HH---------H-HHHHHHHHHHHHHccC--ChH----HHHHHHHHHHHHHH
Q 005551 213 -ERWHVPHFEKM---LY---------D-QGQLANVYLDAFSLTK--DVF----YSYICRDILDYLRR 259 (691)
Q Consensus 213 -~~W~vPHfEKm---Ly---------d-nA~ll~~ya~Ay~~tg--~~~----y~~~A~~~~~~l~~ 259 (691)
..|..|+-.++ +| | -+..+.+++.|+++.+ |+. +++.|+++.+|..+
T Consensus 147 h~~W~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~a~~ 213 (495)
T PLN03009 147 HNCWERPEDMDTPRTVYAVNAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAIKTFQFADM 213 (495)
T ss_pred cccCcChhhcCCCCeEEEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 24777743321 22 1 3788899999999987 555 46788888899886
No 89
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=87.53 E-value=11 Score=43.30 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccc
Q 005551 469 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 503 (691)
Q Consensus 469 ~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D 503 (691)
.+++...-||++|+|+-||+..+.+.+.+...++-
T Consensus 375 ElvEStyyLYrATkdp~yL~vG~~~l~sLe~~~k~ 409 (622)
T KOG2429|consen 375 ELVESTYYLYRATKDPFYLHVGEDMLKSLEKYTKV 409 (622)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC
Confidence 58999999999999999999999999999887754
No 90
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=87.42 E-value=3.6 Score=45.44 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCC-
Q 005551 429 VAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG- 507 (691)
Q Consensus 429 ~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~G- 507 (691)
..+++-+||.+++.-..++ .. .+.|--.=++-|||..|..+|+.-||++|.+|.+.+..-|-.+ ++
T Consensus 151 e~~ea~~Wv~~~L~f~~~~---------~V---NlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sp-s~I 217 (546)
T KOG2431|consen 151 EFEEAREWVEKKLHFEKDR---------DV---NLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSP-SPI 217 (546)
T ss_pred HHHHHHHHHHhhccccccc---------ce---ehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCC-CCC
Confidence 4556667777776421111 11 2234445567899999999999999999999999999999544 44
Q ss_pred ccccCCCCCCccccccccCCCCCCCChHHHHHH---HHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005551 508 GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI---NLVRLASIVAGSKSDYYRQNAEHSLAVFETR 571 (691)
Q Consensus 508 g~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~---~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~ 571 (691)
.|-+..-... ....++- + --|+.|.... .+-.|+.+||+ +.|.+.|++..+.+...
T Consensus 218 PysdVnL~~~-~A~~p~~--~--~~SStaEvttiQlEfr~Ls~ltgd---~kY~~~a~kv~ehih~~ 276 (546)
T KOG2431|consen 218 PYSDVNLGTG-TAHPPRW--T--GDSSTAEVTTIQLEFRYLSRLTGD---PKYEELAEKVTEHIHGL 276 (546)
T ss_pred CcceeecCCC-cccCCCC--C--CccchhhheeeeeeHHHHHhhcCC---chHHHHHHHHHHHHhcc
Confidence 3433321111 1111111 1 1223332222 36678999996 67999999988876543
No 91
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=86.35 E-value=0.9 Score=48.40 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005551 230 LANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 269 (691)
Q Consensus 230 ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfy 269 (691)
-+..++++|+.++++.|++.+.++++||+. |+.|+|||-
T Consensus 49 e~~fLa~~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWP 87 (290)
T TIGR02474 49 EIRYLAQVYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWP 87 (290)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcC
Confidence 456678899999999999999999999997 778999983
No 92
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=86.35 E-value=5 Score=46.15 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=74.3
Q ss_pred cchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC------
Q 005551 384 DKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP------ 457 (691)
Q Consensus 384 dkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~------ 457 (691)
...+.+|....|..+-..|+.+||.... .++....++.++++..+..+...+...+.+.|..
T Consensus 199 ~~~~~~w~l~~i~~~~~~y~~tGD~~~l------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DW~~~~~~~ 266 (509)
T PF05592_consen 199 GFGIPDWSLAWIIIPWDYYLYTGDREFL------------EEYYPAMKRYLDYLERRVDDGLDGLPGWGFGDWLAPGNDG 266 (509)
T ss_dssp GGGBHHHHHHHHHHHHHHHHHHT-HHHH------------HHHHHHHHHHHHHHHTTB-TSSB-CCSB--S-SS----TT
T ss_pred CCCCccHHHHHHHHHHHHHHHhCCHHHH------------HHHHHHHHHHHHHHHHhCCccccCCCCCceeecCCccCcc
Confidence 4466789999999999999999994322 4667788888888887664410111111122211
Q ss_pred -CCCCCCccc---HHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCcc
Q 005551 458 -SKAPGFLDD---YAFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGY 509 (691)
Q Consensus 458 -~~~~~~l~D---yA~li~all~Ly~~Tgd~----~~L~~A~~L~~~~~~~F~D~~~Gg~ 509 (691)
......+-. |.+++..+.++.++.|++ .|.++|.+|-+.+.++|||++.|.+
T Consensus 267 ~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~d~~~g~~ 326 (509)
T PF05592_consen 267 DGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFWDPEKGGY 326 (509)
T ss_dssp ---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCEETTTTEE
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCcccCcc
Confidence 111222222 456666788889999985 7999999999999999999887744
No 93
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=85.43 E-value=22 Score=40.92 Aligned_cols=283 Identities=18% Similarity=0.168 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCcccccCcccccCCceeeechHHHHHHhhhh
Q 005551 226 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 305 (691)
Q Consensus 226 dnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~DADs~~~~~~~~~~EG~yY~wt~~Ei~~~l~~~ 305 (691)
.|=+.+..|.-||-+||++.|+..|.++.+=|+--+-.|.|-=++..+.-|. -+.=|.|...-.. +|
T Consensus 263 ~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG---------~~~n~~wasgg~S-IL--- 329 (625)
T KOG2204|consen 263 TNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSG---------DADNYGWASGGSS-IL--- 329 (625)
T ss_pred eeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccC---------ccCCcccccCcch-Hh---
Confidence 3667777888899999999999999999999998888888877777666551 2455667632111 22
Q ss_pred HHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcc
Q 005551 306 AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDK 385 (691)
Q Consensus 306 ~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddk 385 (691)
++.|.+. +| ..-+.+.-|.+ ...++...+|+.|...-. |. .+=.+
T Consensus 330 ----------aE~gtlh----------le----------f~~LS~ltg~P--~~~ekv~~IRk~l~k~ek--P~-GLypn 374 (625)
T KOG2204|consen 330 ----------AEFGTLH----------LE----------FSYLSKLTGNP--TFAEKVVKIRKVLNKSEK--PH-GLYPN 374 (625)
T ss_pred ----------hhcCcee----------ee----------hHHhhhccCCc--hHHHHHHHHHHHHHhhcC--CC-CCCcc
Confidence 1222211 00 00122222322 123344444544433221 21 22222
Q ss_pred hhh----chHHHHHH--H--------HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeE
Q 005551 386 VIV----SWNGLVIS--S--------FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRL 449 (691)
Q Consensus 386 ilt----~WNal~i~--a--------La~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~--g~l 449 (691)
-|. -|.-.+.+ | |.++.-..+. -+.++..+=.+++..+.+++..... |..
T Consensus 375 YinP~sg~wgq~~tslg~lgDSfyeyllK~wl~s~k--------------Td~eak~my~~am~Ai~~~li~~S~~s~lt 440 (625)
T KOG2204|consen 375 YINPSSGEWGQHHTSLGALGDSFYEYLLKAWLQSDK--------------TDCEAKGMYEDAMIAIEKYLIFKSDGSGLT 440 (625)
T ss_pred cccCCCCchhhHHhHHhhhhhhHHHHHHHHHhhcCC--------------cchHHHHhHHHHHHHHHhhheeccCCCCeE
Confidence 221 23333222 1 3444433332 1245666677777778887765433 344
Q ss_pred EEE-ecCCCCCCCCCcccHHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHHHhcccccC--C--ccccCCCCCCcc
Q 005551 450 QHS-FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREG--G--GYFNTTGEDPSV 519 (691)
Q Consensus 450 ~~~-~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~-----~~L~~A~~L~~~~~~~F~D~~~--G--g~f~~~~~~~~l 519 (691)
|-+ +..|.. .--..-.|.+.-|+++|-...++. .|++.+.+++..+-+-|....+ | .|+.+.. ++..
T Consensus 441 yi~e~~~g~l--ehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia~TchesY~rt~T~lgpesf~fn~~-~ea~ 517 (625)
T KOG2204|consen 441 YISEWNGGGL--EHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIATTCHESYTRTTTKLGPESFWFNHG-VEAF 517 (625)
T ss_pred EEEecCCCch--hhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHHHHHHHHHhccccccChhhhcccCc-cchh
Confidence 444 444432 122334577788999998888774 5999999999999887754322 2 2443322 2222
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 005551 520 LLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPL 581 (691)
Q Consensus 520 ~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~~~~~ 581 (691)
.+|..+-+ -+-- ...+..++-|.++|++ +.||+-+-+.++++... .+.-.++..
T Consensus 518 ~~r~~Esy--yILr--pEviEs~fYlwRlT~d---~kyR~wgweavqalek~-cr~~~G~~g 571 (625)
T KOG2204|consen 518 AVRKVESY--YILR--PEVIESYFYLWRLTGD---QKYRSWGWEAVQALEKY-CRVAKGYSG 571 (625)
T ss_pred hhhcccce--eecC--HHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHh-cccccchhh
Confidence 22222210 0111 2456778889999996 78999998888765432 234444444
No 94
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=85.34 E-value=89 Score=37.21 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=22.4
Q ss_pred CChHHHHHHHHHHHHHHHhccCCCCceee
Q 005551 242 KDVFYSYICRDILDYLRRDMIGPGGEIFS 270 (691)
Q Consensus 242 g~~~y~~~A~~~~~~l~~~m~~~~Ggfys 270 (691)
.++...+..+++++||.+ |++++|||-+
T Consensus 382 ~~~~~~~~l~~a~~~Ll~-~Qn~dGGw~a 409 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILG-MQSSNGGFAA 409 (621)
T ss_pred cccccHHHHHHHHHHHHH-HcCCCCCEee
Confidence 356667888999999987 6789999954
No 95
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=85.24 E-value=23 Score=39.17 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccc----
Q 005551 428 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD---- 503 (691)
Q Consensus 428 ~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D---- 503 (691)
+.|+.+...+.+.+. .|.+-|....|....-+..|---+++.++-++++.|+|..+++......+.+++.+.+
T Consensus 50 ~~a~~~L~~~~~~~~---~G~ipn~~~~~~~~~Y~s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~~ 126 (370)
T PF06202_consen 50 EEARNILATFAGTQR---HGLIPNELRDGEEPRYNSVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTDF 126 (370)
T ss_pred HHHHHHHHHHHHhhh---cCcccCcccCCCCCCCCCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456666655555443 5788887766665555667777899999999999999999997777655555555422
Q ss_pred -----ccCCccccCCCCCCccccccccC---------CCCCCCChHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHH
Q 005551 504 -----REGGGYFNTTGEDPSVLLRVKED---------HDGAEPSGNSVSVINLVRLASIVAG---SKSDYYRQNAEHSLA 566 (691)
Q Consensus 504 -----~~~Gg~f~~~~~~~~l~~r~~~~---------~D~a~PS~nsv~a~~LlrL~~lt~~---~~~~~y~~~A~~~l~ 566 (691)
+++| +...... ....-+++. -+++.-.-|+.+..+|..++.+... .....|++.|+++-+
T Consensus 127 ~~~~d~~~g-l~~~~~~--~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~ 203 (370)
T PF06202_consen 127 GIRVDPEDG-LIYSGNG--LNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAAELAEKFGDELAARYREWAERLKE 203 (370)
T ss_pred ccccccCCC-eeecCCC--CCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 2222 2221110 000111111 1222334466666677766666542 112578899998888
Q ss_pred HHHHHH
Q 005551 567 VFETRL 572 (691)
Q Consensus 567 ~~~~~i 572 (691)
.|....
T Consensus 204 ~F~~~F 209 (370)
T PF06202_consen 204 SFEKRF 209 (370)
T ss_pred HHHHHH
Confidence 887765
No 96
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=85.17 E-value=1.8 Score=40.94 Aligned_cols=46 Identities=9% Similarity=0.030 Sum_probs=36.8
Q ss_pred HHHHHHHh-ccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCccee
Q 005551 9 EGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 63 (691)
Q Consensus 9 ~~vA~~lN-~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~ 63 (691)
+|+|+-++ ..+..+|||+|+-|+|...| |--||| |+++-.||+++-
T Consensus 59 eELa~e~~~~~v~~akVDiD~~~~LA~~f--------gV~siP-TLl~FkdGk~v~ 105 (132)
T PRK11509 59 GELLREFPDYTWQVAIADLEQSEAIGDRF--------GVFRFP-ATLVFTGGNYRG 105 (132)
T ss_pred HHHHHHhcCCceEEEEEECCCCHHHHHHc--------CCccCC-EEEEEECCEEEE
Confidence 45666666 34889999999999999999 888999 555567888774
No 97
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=3.1 Score=40.22 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=66.8
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCC-CCCCHHH--------HHHHHHHHhcCCCCCCceEEeCCCCcce-eeccccCC
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDK--------VYMTYVQALYGGGGWPLSVFLSPDLKPL-MGGTYFPP 70 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDre-erPdid~--------~ym~~~q~~~g~gGWPl~vfltPd~~Pf-~~gTY~P~ 70 (691)
|-++.|.++++.++|-+||+.+.+|-+ +.|-+-. -|-+..|.. +--|-|.-||..-.|+-+ .--.|+||
T Consensus 60 ~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf-~vrstPtfvFfdk~Gk~Il~lPGY~pp 138 (182)
T COG2143 60 FKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF-AVRSTPTFVFFDKTGKTILELPGYMPP 138 (182)
T ss_pred HHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHh-ccccCceEEEEcCCCCEEEecCCCCCH
Confidence 457889999999999999999998865 4443221 122333333 677899999999999976 46799999
Q ss_pred CCCCCCccHHHHHHHHHHHHHhcHH
Q 005551 71 EDKYGRPGFKTILRKVKDAWDKKRD 95 (691)
Q Consensus 71 ~~~~g~~gf~~~L~~i~~~w~~~~~ 95 (691)
+ .|.-||+-|++-.-++-.
T Consensus 139 e------~Fl~vlkYVa~g~ykd~~ 157 (182)
T COG2143 139 E------QFLAVLKYVADGKYKDTK 157 (182)
T ss_pred H------HHHHHHHHHHHHHHhhhc
Confidence 7 599999999987765544
No 98
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=84.31 E-value=1.7 Score=41.23 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=33.3
Q ss_pred HHHHHhc--cceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCccee
Q 005551 11 VAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 63 (691)
Q Consensus 11 vA~~lN~--~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~ 63 (691)
+++.++. .||.|.||.++.+++-+.| |--|+|..+|+.++|+++.
T Consensus 45 l~~~~~~~~~~v~v~vd~~~~~~~~~~~--------~V~~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 45 LKQKYGDQVNFVMLNVDNPKWLPEIDRY--------RVDGIPHFVFLDREGNEEG 91 (142)
T ss_pred HHHHhccCeeEEEEEcCCcccHHHHHHc--------CCCCCCEEEEECCCCCEEE
Confidence 3444433 5888999887666555444 7779999999999999874
No 99
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=83.86 E-value=4.1 Score=46.12 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHhccccC-CC--eE------------EEEecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHH
Q 005551 424 KEYMEVAESAASFIRRHLYDEQ-TH--RL------------QHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLV 488 (691)
Q Consensus 424 ~~~l~~A~~~~~~l~~~~~d~~-~g--~l------------~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~ 488 (691)
.++|..-.+-++-|.++..++- ++ .| .+.+.||+.......-.+=-+...|..|-.+|||++|.+
T Consensus 13 ~~~l~~v~~y~d~vl~~~~d~~~~~TPLlaDG~D~~t~~pV~W~~pDg~~~~iSNfAsQQN~lR~L~~LS~lTgd~~Y~q 92 (557)
T PF06917_consen 13 DERLSAVKQYADNVLQHARDPYENPTPLLADGIDPRTLKPVEWIFPDGRDAPISNFASQQNFLRTLVGLSNLTGDPKYQQ 92 (557)
T ss_dssp --HHHHHHHHHHHHHHHTB--STS--S-B-SEE-TTT--B-EEE-TTS-EEEEE-GGG-HHHHHHHHHHHHHH--THHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCeeccccccCCCCceEEECCCCCccccccHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 4678888888888888777654 11 11 122233332111111122356799999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCccccCC
Q 005551 489 WAIELQNTQDELFLDREGGGYFNTT 513 (691)
Q Consensus 489 ~A~~L~~~~~~~F~D~~~Gg~f~~~ 513 (691)
.|.++.++..++|.|+. |-||+..
T Consensus 93 ~A~~~~~yfldh~~D~~-GL~~WGG 116 (557)
T PF06917_consen 93 RAQEIIRYFLDHFVDDS-GLFYWGG 116 (557)
T ss_dssp HHHHHHHHHHHHSB-TT-S-BS-ST
T ss_pred HHHHHHHHHHHhccCCC-cceeecC
Confidence 99999999999999874 7777753
No 100
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=83.35 E-value=18 Score=40.19 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=78.6
Q ss_pred HHHHHHHHHhccccCC--CeEEEEec---CCCC---CCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005551 431 ESAASFIRRHLYDEQT--HRLQHSFR---NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 502 (691)
Q Consensus 431 ~~~~~~l~~~~~d~~~--g~l~~~~~---~g~~---~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~ 502 (691)
.++..|.+.|+...+. +.+.+.+. +|.. +...=.|.=-+.++||+...+..+++.|++.|..|++.+.++-.
T Consensus 74 d~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev 153 (376)
T PRK11097 74 DKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEV 153 (376)
T ss_pred HHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcc
Confidence 5677788888876443 33444442 2321 12233344468899999999999999999999999999998866
Q ss_pred cccCC-ccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 005551 503 DREGG-GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 570 (691)
Q Consensus 503 D~~~G-g~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~ 570 (691)
.+..| +..-.+.+.+ + ..+..-..-||= .+-..+-.++.++++ ..|.+.++..++.+..
T Consensus 154 ~~~~g~g~~LlPG~~g---F-~~~~~~~~NPSY--~~p~~~~~fa~~~~~---~~W~~l~~~~~~lL~~ 213 (376)
T PRK11097 154 VTVPGLGSMLLPGPVG---F-ADDGSWRLNPSY--LPPQLLRRFARFLPG---GPWAALAATNARLLLE 213 (376)
T ss_pred cccCCCceeecccccc---c-cCCCCCeECccc--ccHHHHHHHHHhcCC---chHHHHHHHHHHHHHH
Confidence 54444 3332222110 0 000000011332 345566777888774 5688888777777654
No 101
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=83.09 E-value=48 Score=35.58 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=67.3
Q ss_pred HhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE
Q 005551 371 FDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ 450 (691)
Q Consensus 371 ~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~ 450 (691)
......+...-+|+.-. .--|.-|+++++..++ +.|.+++.++++||+.-.+. +|++-
T Consensus 30 ~~~~~~~~~~TiDN~aT----~~e~~fLa~~y~~t~d----------------~~y~~A~~rgld~LL~aQyp--nGGWP 87 (290)
T TIGR02474 30 KNGGGGNESGTIDNGAT----VTEIRYLAQVYQQEKN----------------AKYRDAARKGIEYLLKAQYP--NGGWP 87 (290)
T ss_pred ccccCCCCcccccCccH----HHHHHHHHHHHHhcCc----------------hhHHHHHHHHHHHHHhhhCC--CCCcC
Confidence 33333356667787722 2346679999999887 89999999999999988775 56665
Q ss_pred EEecC-CCCCCCCCcccHH--HHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHhccc
Q 005551 451 HSFRN-GPSKAPGFLDDYA--FLISGLLDLYEFGS-----GTKWLVWAIELQNTQDELFLD 503 (691)
Q Consensus 451 ~~~~~-g~~~~~~~l~DyA--~li~all~Ly~~Tg-----d~~~L~~A~~L~~~~~~~F~D 503 (691)
..+.. +.-...-+.+|.+ .++..|.++++..+ +...+.++..-.+..++.+..
T Consensus 88 Qf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILk 148 (290)
T TIGR02474 88 QFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILK 148 (290)
T ss_pred cccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 54432 1111123344543 56777777776433 233344555555554444443
No 102
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=81.80 E-value=2.9 Score=43.76 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CCCCCCCCcccHH
Q 005551 390 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYA 468 (691)
Q Consensus 390 WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~-g~~~~~~~l~DyA 468 (691)
|.+-.+.-+..|+.-... +.=++.+++...-+. .++ |......|-+|-+
T Consensus 47 WqAHlldclvDA~lR~~~----------------~Arr~ri~~T~r~~~--------------vRN~G~l~shdyYDDma 96 (377)
T COG4833 47 WQAHLLDCLVDAQLRDPQ----------------PARRARINRTVRSHR--------------VRNFGWLNSHDYYDDMA 96 (377)
T ss_pred HHHHHHHHHHHHHhcCCc----------------HhHHHHHHHHHhhhh--------------ccccccccchhhhhhHH
Confidence 446667777788765443 333455555542221 122 3445567789999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHH-HHHHHHHHhcccccCCcccc
Q 005551 469 FLISGLLDLYEFGSGTKWLVWAI-ELQNTQDELFLDREGGGYFN 511 (691)
Q Consensus 469 ~li~all~Ly~~Tgd~~~L~~A~-~L~~~~~~~F~D~~~Gg~f~ 511 (691)
|++.|+-.+|.++| .+++.|. .+.+.+.+-..|..+|++-+
T Consensus 97 WlALAl~Ra~Kv~g--vr~~~alp~l~~~~v~Gw~D~~gGg~pW 138 (377)
T COG4833 97 WLALALERADKVAG--VRRRRALPKLTNQFVEGWVDEDGGGIPW 138 (377)
T ss_pred HHHHHHHhhhcccc--eeccccchhHHHhhhhccccccCCcccc
Confidence 99999999999999 7777775 56677777777777777533
No 103
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.11 E-value=63 Score=34.06 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=46.8
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccc
Q 005551 431 ESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 510 (691)
Q Consensus 431 ~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f 510 (691)
..+.-||.++... +|+| +|+| -.+.|-+|--+.|..|- +-|...|.++. +|.+.+..- -|.++|||-
T Consensus 213 d~lgwwlceRQ~~--sGGL-----NGRp---eKlpDVCYSwWvlsSL~-iigrl~wId~e-kL~~FIl~c-Qd~~~GGfs 279 (329)
T KOG0366|consen 213 DLLGWWLCERQLP--SGGL-----NGRP---EKLPDVCYSWWVLSSLA-IIGRLHWIDRE-KLTKFILAC-QDEETGGFS 279 (329)
T ss_pred HHHHHHHHhccCC--CCCC-----CCCc---ccCcchhhHHHHHhHHH-HhhhhhhccHH-HHHHHHHhc-CCCCCCCcC
Confidence 4566777776654 5666 5665 34567666666666653 45778888875 466666554 487899987
Q ss_pred cCCCC
Q 005551 511 NTTGE 515 (691)
Q Consensus 511 ~~~~~ 515 (691)
+.+.+
T Consensus 280 DRpgd 284 (329)
T KOG0366|consen 280 DRPGD 284 (329)
T ss_pred CCCCC
Confidence 76543
No 104
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=79.94 E-value=2.1 Score=45.73 Aligned_cols=47 Identities=23% Similarity=0.197 Sum_probs=34.1
Q ss_pred hhHHHHH---HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005551 222 KMLYDQG---QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 269 (691)
Q Consensus 222 KmLydnA---~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfy 269 (691)
+-.+||. .-|..++++|+.|+|+.|++.+.+.++||+. .+-|+|||=
T Consensus 33 ~~TiDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWP 82 (289)
T PF09492_consen 33 NSTIDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWP 82 (289)
T ss_dssp SCE-GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--B
T ss_pred cCcccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCC
Confidence 3455543 4567789999999999999999999999997 456799983
No 105
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=79.83 E-value=74 Score=32.35 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 005551 181 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 260 (691)
Q Consensus 181 ~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~ 260 (691)
....++.++++.+.. .. +.+|||.-+. ... +-..++-+..+.++..+.... +.......++++||.+.
T Consensus 49 ~~~~~~~~~~~~l~~--~q-~~dG~~~~~~-~~~------~~~~~~T~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 116 (300)
T cd00688 49 KADENIEKGIQRLLS--YQ-LSDGGFSGWG-GND------YPSLWLTAYALKALLLAGDYI--AVDRIDLARALNWLLSL 116 (300)
T ss_pred cchHHHHHHHHHHHh--cc-CCCCCccCCC-CCC------CcchHhHHHHHHHHHHcCCcc--ccCHHHHHHHHHHHHHc
Confidence 345566666666655 22 5678776221 111 446778888888888765443 45677889999999975
Q ss_pred ccCCCCceee
Q 005551 261 MIGPGGEIFS 270 (691)
Q Consensus 261 m~~~~Ggfys 270 (691)
+.++|||..
T Consensus 117 -q~~dG~~~~ 125 (300)
T cd00688 117 -QNEDGGFRE 125 (300)
T ss_pred -cCCCCCeee
Confidence 567787754
No 106
>PLN03012 Camelliol C synthase
Probab=78.67 E-value=14 Score=44.72 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec---CCC----CCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005551 428 EVAESAASFIRRHLYDEQTHRLQHSFR---NGP----SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 494 (691)
Q Consensus 428 ~~A~~~~~~l~~~~~d~~~g~l~~~~~---~g~----~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~ 494 (691)
...+++.+||+++... +|++..++. +.. .....+..--||++.||+...+...|+.-+.+|.+.+
T Consensus 639 ~~Irrav~fLls~Q~~--DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~L 710 (759)
T PLN03012 639 EAIRKGVHFLLAAQKD--NGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLI 710 (759)
T ss_pred HHHHHHHHHHHHhcCC--CCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 4778899999988754 466655432 211 0123556677899999998766555656677776543
No 107
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=78.17 E-value=17 Score=42.73 Aligned_cols=109 Identities=10% Similarity=0.028 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh-----ccccCCCeEEE----EecCC----C
Q 005551 391 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH-----LYDEQTHRLQH----SFRNG----P 457 (691)
Q Consensus 391 Nal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~-----~~d~~~g~l~~----~~~~g----~ 457 (691)
.-+.|.++.+.++.++|.... .++...++++.+...+- -.| .+|.++. +|.|. .
T Consensus 350 tLWfi~al~~Y~~~tgD~~~l------------~~l~p~l~~ii~~y~~G~~~~i~~d-~dGLi~~g~~lTWMDa~~g~~ 416 (575)
T TIGR01561 350 SLWAIHAIDKTFAYSQDFLFI------------RDVVDKVLDIIDNYCAGNDFAIGMD-NDLIFHKGAPLTWMDAKVDER 416 (575)
T ss_pred HHHHHHHHHHHHHHhCCHHHH------------HHHHHHHHHHHHHHhcCCCcEEEEC-CCccEeCCCCCCCCCCCCCCc
Confidence 356889999999999983111 23444555555433321 112 2343332 14443 1
Q ss_pred C---CCCCCcccHHHHHHHHHH---HHHHcCC--hHHHHHHHHHHHHHHHhcccccCCccccC
Q 005551 458 S---KAPGFLDDYAFLISGLLD---LYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNT 512 (691)
Q Consensus 458 ~---~~~~~l~DyA~li~all~---Ly~~Tgd--~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~ 512 (691)
+ ..-+..|-+|....||.. +.+..|+ ..|.++|.++.+.+.++||+++.|.+|+.
T Consensus 417 ~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~a~~y~~~A~~lk~~F~~~FW~~~~g~l~D~ 479 (575)
T TIGR01561 417 AVTPRAGAACEINALWYNALKTAEFLGNELGEDAESLEEKAAGVAKNFAEKFINPDGNCLFDL 479 (575)
T ss_pred cCCCCCCccHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCCCeeEEE
Confidence 1 222567778877666555 5666665 46999999999999999999876666664
No 108
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=77.90 E-value=15 Score=43.63 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc
Q 005551 183 QKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI 262 (691)
Q Consensus 183 ~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~ 262 (691)
.+.+.+.++-+.. . -+-+|+|+ ..|-+.+ .|..+..+.+++.+.+...+. ..++++++||++. +
T Consensus 459 ~~~i~rAl~~L~~--~-Q~~DGsw~-----g~wg~~y----~YgT~~al~aL~~~G~~~~~~---~~i~rA~~~L~~~-Q 522 (621)
T TIGR01787 459 RNVLERALEYLRR--E-QRADGSWF-----GRWGVNY----TYGTGFVLSALAAAGRTYRNC---PEVQKACDWLLSR-Q 522 (621)
T ss_pred HHHHHHHHHHHHH--h-cCCCCCCc-----ccCCCCC----chhHHHHHHHHHHhCCcccCC---HHHHHHHHHHHhh-c
Confidence 3455555555554 2 23457765 2576653 577888888888764433322 7789999999986 5
Q ss_pred CCCCcee
Q 005551 263 GPGGEIF 269 (691)
Q Consensus 263 ~~~Ggfy 269 (691)
.++|||-
T Consensus 523 ~~DGGWg 529 (621)
T TIGR01787 523 MPDGGWG 529 (621)
T ss_pred CCCCCCC
Confidence 7789884
No 109
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=76.93 E-value=39 Score=35.06 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=44.8
Q ss_pred cccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005551 199 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 269 (691)
Q Consensus 199 ~D~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfy 269 (691)
|=+-+|||.= | -++-+--..-.|..+..++.|.+...-+ .++..++++||... +.++|.|-
T Consensus 9 y~~~DGsfs~------f-~~~~~~s~WLTAfv~k~f~~a~~~i~vd--~~~i~~a~~wL~~~-Q~~dG~F~ 69 (246)
T PF07678_consen 9 YRRSDGSFSA------F-SSDSPSSTWLTAFVVKVFSQAKKYIFVD--ENVICRAVKWLISQ-QQPDGSFE 69 (246)
T ss_dssp TB-TTSSBBS------S-TTTSSBBHHHHHHHHHHHHHHTTTS-CE--HHHHHHHHHHHHHH-BETTSEB-
T ss_pred CCCCCCCeec------c-ccCCcccHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHh-hcCCCccc
Confidence 3356788873 3 2333557889999999999998884333 57789999999998 67889884
No 110
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=76.53 E-value=1.7e+02 Score=34.85 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 005551 424 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 497 (691)
Q Consensus 424 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~ 497 (691)
+.|...|.++.+.+.++++..+.|.+.+.+.+ ...... |-+.+...+ =-+.-..|++.+...+++.+.+
T Consensus 443 ~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~---~~~~~v-Dasll~l~~-fg~i~~~D~~~~~t~~~I~~~L 511 (612)
T COG3387 443 EHWRKTADELKEAVLRRGYAEDGGYFVRSLGR---KPDDTV-DASLLGLVL-FGFIPPDDPRILATVEAIEREL 511 (612)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeeehhcCC---Cccccc-cHHHhhccc-cCccCCCCHHHHHHHHHHHHHH
Confidence 67999999999999999998765555443332 111222 222221111 1122456776777666666554
No 111
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=75.64 E-value=1.1e+02 Score=32.32 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCccc--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCC
Q 005551 430 AESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD--YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 507 (691)
Q Consensus 430 A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~D--yA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~G 507 (691)
..++.+||.+.... +|+| .|++ +...| |.|.+.|.+ +.+ +...|.+ ...+.+.+.+.- +...|
T Consensus 198 ~~~~~~~L~~~q~~--~GGf-----~gr~---~k~~D~~ysf~~~a~l--~~l-~~~~~~~-~~~l~~~l~~~q-~~~~G 262 (287)
T cd02894 198 RDRLGWWLCERQLP--SGGL-----NGRP---EKLPDVCYSWWVLSSL--KII-GRLHWIN-KNKLKNFILACQ-DEEDG 262 (287)
T ss_pred HHHHHHHHHHhCCC--CCCc-----CCCC---CCCCchhHhhHHHHHH--HHh-ccccccC-HHHHHHHHHHhc-CCCCC
Confidence 45677888876643 4666 3333 22233 344444444 333 4445655 788888887765 44567
Q ss_pred ccccCC
Q 005551 508 GYFNTT 513 (691)
Q Consensus 508 g~f~~~ 513 (691)
||-..+
T Consensus 263 Gf~~~p 268 (287)
T cd02894 263 GFADRP 268 (287)
T ss_pred CcCCCC
Confidence 875443
No 112
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=74.92 E-value=25 Score=38.07 Aligned_cols=80 Identities=20% Similarity=0.166 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHHHhCCCcccCCC-cEEEEEcCCCCCCCC----CchhHHH--HHHHHHHHHHHHHccCChHHHHHHH
Q 005551 179 ASEGQKMVLFTLQCMAKGGIHDHVGG-GFHRYSVDERWHVPH----FEKMLYD--QGQLANVYLDAFSLTKDVFYSYICR 251 (691)
Q Consensus 179 ~~~~~~~~~~TL~~m~~GGi~D~v~G-GF~RYsvD~~W~vPH----fEKmLyd--nA~ll~~ya~Ay~~tg~~~y~~~A~ 251 (691)
+.+.++|+..--.++.- -+..-.| -|-|--.--.-+.|. -||-... -+-||.-|+..-+.||++.|.+.|+
T Consensus 134 ~dellkmakelg~kllp--afnttsglp~~rinlk~gi~~pea~~~~e~dtctac~gtlilefaals~~tg~~ifee~ar 211 (587)
T KOG2430|consen 134 DDELLKMAKELGNKLLP--AFNTTSGLPFPRINLKFGIQDPEAHLGREKDTCTACAGTLILEFAALSRFTGAPIFEEKAR 211 (587)
T ss_pred hHHHHHHHHHHhhhhcc--ccccCCCCCCcccchhccccChhhhhcccccchhhccchhhhhHHHHhhccCChhhHHHHH
Confidence 45677777665555443 2222222 344433322223332 2443333 4567777888899999999999999
Q ss_pred HHHHHHHHh
Q 005551 252 DILDYLRRD 260 (691)
Q Consensus 252 ~~~~~l~~~ 260 (691)
++++||-..
T Consensus 212 kaldflwek 220 (587)
T KOG2430|consen 212 KALDFLWEK 220 (587)
T ss_pred HHHHHHHHH
Confidence 999998653
No 113
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=74.66 E-value=0.66 Score=41.41 Aligned_cols=67 Identities=33% Similarity=0.394 Sum_probs=43.6
Q ss_pred ccCCCCHHHHHHHhccceEEeecCCCCCCHHH-------------HHHHHHHHhcCCCCCCceEEeCCCCccee-ecccc
Q 005551 3 VESFEDEGVAKLLNDWFVSIKVDREERPDVDK-------------VYMTYVQALYGGGGWPLSVFLSPDLKPLM-GGTYF 68 (691)
Q Consensus 3 ~esF~d~~vA~~lN~~Fv~iKVDreerPdid~-------------~ym~~~q~~~g~gGWPl~vfltPd~~Pf~-~gTY~ 68 (691)
++.+++++++..++++|..|.|+-++-.+... .-.+..+.+ |--|-|..||+++||+.++ ...|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~v~gtPt~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 25 KELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRY-GVNGTPTIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp HHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHT-T--SSSEEEECTTTSCEEEEEESS-
T ss_pred HHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHc-CCCccCEEEEEcCCCCEEEEecCCC
Confidence 45566777888888889999998875443211 122344444 7789999999999999875 34555
Q ss_pred CC
Q 005551 69 PP 70 (691)
Q Consensus 69 P~ 70 (691)
|+
T Consensus 104 ~~ 105 (112)
T PF13098_consen 104 SP 105 (112)
T ss_dssp -H
T ss_pred CH
Confidence 54
No 114
>PRK10137 alpha-glucosidase; Provisional
Probab=73.79 E-value=26 Score=42.56 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=37.4
Q ss_pred HHHH---HHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccCC
Q 005551 468 AFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 513 (691)
Q Consensus 468 A~li---~all~Ly~~Tgd~----~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~ 513 (691)
|++. ..|.++++..|++ +|.++|.++.+.+.+.|||++.|.||+..
T Consensus 582 syLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~Dyd 634 (786)
T PRK10137 582 SYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVR 634 (786)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEe
Confidence 5555 6777788888875 48899999999999999999998887654
No 115
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=72.33 E-value=12 Score=41.12 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---CCCCCcccHH
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---KAPGFLDDYA 468 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~---~~~~~l~DyA 468 (691)
-.+++||..|++..+++ ...|+..|+.+..-+..+... .|+..- .-|.. ......-+-+
T Consensus 116 l~iA~ALl~A~~~Wg~~--------------~~~y~~~A~~~~~~i~~~~v~--~g~~~l--lpG~~~f~~~~~~~~npS 177 (342)
T PF01270_consen 116 LDIAYALLLAARRWGDG--------------AYNYLAEALAIINAIKTHEVN--PGRYVL--LPGDWGFNSDDYWTTNPS 177 (342)
T ss_dssp HHHHHHHHHHHHHHTSS--------------SSHHHHHHHHHHHHHHHHHEE--TTEEEE--CSSSSSCBTTSEEEEEGG
T ss_pred HHHHHHHHHHHhhcCCc--------------chhHHHHHHHHHHHHHhheeC--CCceEE--eccccccCCCCceEeChh
Confidence 37889999999999952 157999999999998888776 342221 22221 1111111223
Q ss_pred HHH-HHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCC
Q 005551 469 FLI-SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 507 (691)
Q Consensus 469 ~li-~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~G 507 (691)
+.+ -++-.++++++++.|.+.+....+.+.+.. .+.+|
T Consensus 178 Y~~~pa~~~f~~~~~~~~W~~v~~~~~~ll~~~~-~~~tG 216 (342)
T PF01270_consen 178 YFMPPAFRAFAAATGDPRWNEVADSSYALLQKAS-FPKTG 216 (342)
T ss_dssp GS-HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHH-TTTTT
T ss_pred hccHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc-ccCCC
Confidence 333 778899999999999999998888877665 33444
No 116
>PLN03012 Camelliol C synthase
Probab=71.56 E-value=2.5e+02 Score=34.38 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=36.3
Q ss_pred CcEEEEE-cCCCCCCCCCchhHHHHHHHHHHHHHHH----HccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 005551 204 GGFHRYS-VDERWHVPHFEKMLYDQGQLANVYLDAF----SLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 270 (691)
Q Consensus 204 GGF~RYs-vD~~W~vPHfEKmLydnA~ll~~ya~Ay----~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfys 270 (691)
||+. +| .|..|.+. -|-|..+.+..-.- ...+++...+...++++||+. |++++|||.+
T Consensus 471 GgW~-Fs~~~~gyp~s------D~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~-mQn~dGGwaa 534 (759)
T PLN03012 471 GAWT-FSDRDHGWQAS------DCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLS-LQSKNGGMTA 534 (759)
T ss_pred Cccc-ccCCCCCCCCC------CccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh-ccCCCCCEee
Confidence 5554 34 45566554 34555544321111 122355667889999999997 8899999955
No 117
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=71.44 E-value=4 Score=39.44 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=45.3
Q ss_pred HHHHHHh-ccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeeccccCCCCCCCCccHHHHHHHHHH
Q 005551 10 GVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 88 (691)
Q Consensus 10 ~vA~~lN-~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~gTY~P~~~~~g~~gf~~~L~~i~~ 88 (691)
++|+-++ .++.-+|||.++-|++.+.|. ++.-.|..|.|..++. .+|+++.--.+ +...|.|.-++-=-++.|.+
T Consensus 71 ~la~~~~~~~v~f~~VDvd~~~~la~~~~--V~~~~~v~~~PT~ilf-~~Gk~v~r~~G-~~~~~~~~~~~~~~~~~~~~ 146 (152)
T cd02962 71 ELSLKYNNNNLKFGKIDIGRFPNVAEKFR--VSTSPLSKQLPTIILF-QGGKEVARRPY-YNDSKGRAVPFTFSKENVIR 146 (152)
T ss_pred HHHHHcccCCeEEEEEECCCCHHHHHHcC--ceecCCcCCCCEEEEE-ECCEEEEEEec-cccCccccccccccHHHHHH
Confidence 3455454 358889999999999887762 1111234679955554 69999965555 44444444332222354444
Q ss_pred HH
Q 005551 89 AW 90 (691)
Q Consensus 89 ~w 90 (691)
.+
T Consensus 147 ~~ 148 (152)
T cd02962 147 HF 148 (152)
T ss_pred hc
Confidence 43
No 118
>PLN02613 endoglucanase
Probab=71.01 E-value=2.1e+02 Score=33.23 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=67.2
Q ss_pred cCCCC---CCCCCCCChh--HHHHHH-HhHhhhcccCCCCCcHHHHHHHHHHHHHHHh-----CCCcccCCCcE--EEEE
Q 005551 144 RFGGF---GSAPKFPRPV--EIQMML-YHSKKLEDTGKSGEASEGQKMVLFTLQCMAK-----GGIHDHVGGGF--HRYS 210 (691)
Q Consensus 144 ~~GGf---g~apKFP~~~--~l~~Ll-~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~-----GGi~D~v~GGF--~RYs 210 (691)
.-||| |.--||-.|. ...+|+ .+.............+.+++.+..-|+-|.+ +++|-|||-|- |.
T Consensus 70 lsGGwyDAGD~~Ky~~p~a~s~t~L~w~~~e~~~~~~s~~~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~dH~-- 147 (498)
T PLN02613 70 LTGGYYDAGDNVKFGWPMAFTVTLLSWAAIEYQNEISSVNQLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNADHQ-- 147 (498)
T ss_pred CCCCceeCCCCceecCchHHHHHHHHHHHHHhHHHHhhcCCchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCcccc--
Confidence 45998 4456876553 333333 2221111000112346788888888776654 45666776542 32
Q ss_pred cCCCCCCCCCc-------------hhHHHHHHHHHHHHHHHHccCC--h----HHHHHHHHHHHHHHHh
Q 005551 211 VDERWHVPHFE-------------KMLYDQGQLANVYLDAFSLTKD--V----FYSYICRDILDYLRRD 260 (691)
Q Consensus 211 vD~~W~vPHfE-------------KmLydnA~ll~~ya~Ay~~tg~--~----~y~~~A~~~~~~l~~~ 260 (691)
.|..|+-. +..-.-+..+.+++.|+++.++ + .+++.|+++.+|..+.
T Consensus 148 ---~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~~a~~~ 213 (498)
T PLN02613 148 ---CWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVFKDVDSSYSSKLLNHARSLFEFADKY 213 (498)
T ss_pred ---ccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhC
Confidence 48777542 1222256788899999999875 3 4678889999998874
No 119
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=70.80 E-value=84 Score=37.53 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---------CCCC
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---------KAPG 462 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~---------~~~~ 462 (691)
++++.||++++.. + +++-...+++.+||.++......|.....+++..+ ....
T Consensus 310 ala~~AL~e~g~~--~----------------~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~p 371 (634)
T TIGR03463 310 AFAVQALAATPET--A----------------GRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWP 371 (634)
T ss_pred HHHHHHHHHcCCC--c----------------hhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCC
Confidence 7888999886432 1 34557788899999988753222221111121111 1123
Q ss_pred CcccHHHHHHHHHHHHHHcC------ChHHHHHHHHHHHHHHHhcccccCCccc-cCCCCCCccc--cccc-----cCCC
Q 005551 463 FLDDYAFLISGLLDLYEFGS------GTKWLVWAIELQNTQDELFLDREGGGYF-NTTGEDPSVL--LRVK-----EDHD 528 (691)
Q Consensus 463 ~l~DyA~li~all~Ly~~Tg------d~~~L~~A~~L~~~~~~~F~D~~~Gg~f-~~~~~~~~l~--~r~~-----~~~D 528 (691)
..+|-|..+.||+.+..... ....+.+|.+....+ - .+ +|||. +....++..+ +... -..|
T Consensus 372 dsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~---Q-n~-dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d 446 (634)
T TIGR03463 372 VSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSR---Q-NE-DGGFGTYERQRGPRVLELLNPSEMFSTCMTD 446 (634)
T ss_pred ccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHh---c-CC-CCCEeccCCCCcHHHHhcCChHHhhcccccC
Confidence 46888999999998855322 123455555444333 2 23 45543 2221111110 0000 1225
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 005551 529 GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 571 (691)
Q Consensus 529 ~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~ 571 (691)
.+.+..++.++..|..+.........++.....++.++.+...
T Consensus 447 ~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 447 VSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred CCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 5667777767776666654322100123334455555555443
No 120
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=70.43 E-value=27 Score=37.74 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=65.3
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEE--E--ecCCCCCC
Q 005551 387 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQH--S--FRNGPSKA 460 (691)
Q Consensus 387 lt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~--g~l~~--~--~~~g~~~~ 460 (691)
-|+--|-+|.-++..++.+|+ +-|-+.|+++++|+++.-.+..+ |.... + |..-.+.+
T Consensus 183 ctac~gtlilefaals~~tg~----------------~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgi 246 (587)
T KOG2430|consen 183 CTACAGTLILEFAALSRFTGA----------------PIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGI 246 (587)
T ss_pred hhhccchhhhhHHHHhhccCC----------------hhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCc
Confidence 355667789999999999998 77999999999999876544322 22222 1 11112333
Q ss_pred CCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q 005551 461 PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 501 (691)
Q Consensus 461 ~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F 501 (691)
.+-.+.| -+=++..|-..||..||++-..-.+.+....
T Consensus 247 gagidsy---yey~lkayillgddsfldrfn~hydai~ryi 284 (587)
T KOG2430|consen 247 GAGIDSY---YEYLLKAYILLGDDSFLDRFNKHYDAIKRYI 284 (587)
T ss_pred CcchHHH---HHHHHHHhheeccHHHHHHHHHHHHHHHHHh
Confidence 3344444 3446777888899999999888887776553
No 121
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=70.11 E-value=77 Score=36.38 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=94.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhcC--CCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHH
Q 005551 349 ASKLGMPLEKYLNILGECRRKLFDVRSKR--PRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEY 426 (691)
Q Consensus 349 a~~~g~~~~~~~~~l~~~~~~L~~~R~~R--~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~ 426 (691)
+..|..+.+.+.++.+.++..++..-..- -=|.+|++ ..|.|=+.....-++-.+++ .
T Consensus 109 ~g~F~~sd~~ln~i~~~~~~T~~~n~~~~~~Dcp~RdER--~~w~GD~~~~~~~~~~~~~~----------------~-- 168 (509)
T PF05592_consen 109 AGSFSCSDPLLNRIWEMSRRTLRSNMQDVFTDCPKRDER--LGWTGDARVSALTAYYSFGD----------------A-- 168 (509)
T ss_dssp --EEEES-HHHHHHHHHHHHHHHHTBSSSB-SBTTT-T-----BHHHHHHHHHHHHCCT------------------H--
T ss_pred cCceecCcHHHHHHHHHHHHHHHhhCCCCceECcchhhh--cCCcchHHHHHHHHHHhCCc----------------H--
Confidence 34566677788888888887776643321 13677666 35666554433333334554 2
Q ss_pred HHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccccc
Q 005551 427 MEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY-AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 505 (691)
Q Consensus 427 l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~Dy-A~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~ 505 (691)
...++..+.+.+.... +|.+....-... ......-+| .+.+..+.++|..|||.++++..-...+..++.+....
T Consensus 169 -~l~~~~l~~~~~~q~~--~G~~p~~~P~~~-~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~~ 244 (509)
T PF05592_consen 169 -ALYRKWLRDFADSQRP--DGLLPSVAPSYG-GGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERRV 244 (509)
T ss_dssp -HHHHHHHHHHHGGTTT--STT-SSBSS----SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTB
T ss_pred -HHHHHHHHHHHHhhcc--cCCceEEecccC-CCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 2445555555544432 465532210000 112333455 36788999999999999988777666666655553322
Q ss_pred CCc------cccCCCCCCccccccccCCCCCCC---ChHHHHHHH---HHHHHHHhCCCC-chHHHHHHHHHHHHHHHHH
Q 005551 506 GGG------YFNTTGEDPSVLLRVKEDHDGAEP---SGNSVSVIN---LVRLASIVAGSK-SDYYRQNAEHSLAVFETRL 572 (691)
Q Consensus 506 ~Gg------~f~~~~~~~~l~~r~~~~~D~a~P---S~nsv~a~~---LlrL~~lt~~~~-~~~y~~~A~~~l~~~~~~i 572 (691)
..+ +-..++..+. ...+...+ ..|+..+.+ +..|+.++|... ...|+++|+++-+++...+
T Consensus 245 ~~~~~~~~~~~~~DW~~~~------~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~ 318 (509)
T PF05592_consen 245 DDGLDGLPGWGFGDWLAPG------NDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHF 318 (509)
T ss_dssp -TSSB-CCSB--S-SS----------TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccccCCCCCceeecCCcc------CcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 210 0001111000 00111111 145544444 566777777521 2468888888887776654
Q ss_pred H
Q 005551 573 K 573 (691)
Q Consensus 573 ~ 573 (691)
-
T Consensus 319 ~ 319 (509)
T PF05592_consen 319 W 319 (509)
T ss_dssp E
T ss_pred c
Confidence 3
No 122
>PRK13271 treA trehalase; Provisional
Probab=68.97 E-value=1.5e+02 Score=35.01 Aligned_cols=102 Identities=21% Similarity=0.261 Sum_probs=66.0
Q ss_pred hhhchHHHHHHH---HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC
Q 005551 386 VIVSWNGLVISS---FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP 461 (691)
Q Consensus 386 ilt~WNal~i~a---La~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~-~~g~~~~~ 461 (691)
|-++-|+++..+ |++.++.+|+... ..+|.+.|.+..+.|.+.||+++.|.++... ++++.
T Consensus 337 iPVDLNALLy~ae~~LA~la~~lGd~~~------------A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~~~~--- 401 (569)
T PRK13271 337 VPVDLNALMFKMEKILARASKAAGDNAM------------ANQYETLANARQKAIEKYLWNDKEGWYADYDLKSHKV--- 401 (569)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhCChhh------------HHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCCCCE---
Confidence 345678988774 7777788886311 1468899999999999999998777665432 22221
Q ss_pred CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcccc
Q 005551 462 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN 511 (691)
Q Consensus 462 ~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~ 511 (691)
-+ .+.+.+++=||--.-+ .+.|.++.+.+..+|..+ ||.-.
T Consensus 402 ---r~-~~saa~f~PLwag~a~---~~qA~~Vv~~l~~~Ll~p--gGLpT 442 (569)
T PRK13271 402 ---RN-QLTAAALFPLYVNAAA---KDRANKVAAATKTHLLQP--GGLNT 442 (569)
T ss_pred ---ee-chhHHHHHhhhcCCCC---HHHHHHHHHHHHHhcCCC--CCccC
Confidence 22 2456667777632223 357778888777777663 55443
No 123
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=68.56 E-value=43 Score=37.23 Aligned_cols=105 Identities=15% Similarity=0.074 Sum_probs=69.3
Q ss_pred CCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC--eEEEEecCCCC
Q 005551 381 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH--RLQHSFRNGPS 458 (691)
Q Consensus 381 ~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g--~l~~~~~~g~~ 458 (691)
..|..-=|+---.+.+||..|++..++ ++|++.|+.++.-|.++...+..| .++.--..|-.
T Consensus 108 v~D~NsASDGDl~IA~ALl~A~~~W~~----------------~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~ 171 (376)
T PRK11097 108 VLDANSASDADLWIAYSLLEAGRLWKE----------------PRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFA 171 (376)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHhcccccCCCceeecccccccc
Confidence 345555555556789999999999998 789999999999999987764433 22211011100
Q ss_pred CCCCC-cccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q 005551 459 KAPGF-LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 501 (691)
Q Consensus 459 ~~~~~-l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F 501 (691)
..... ++..=++...+-.+++++++..|.+.+....+.+.+.-
T Consensus 172 ~~~~~~~NPSY~~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~a 215 (376)
T PRK11097 172 DDGSWRLNPSYLPPQLLRRFARFLPGGPWAALAATNARLLLETA 215 (376)
T ss_pred CCCCCeECcccccHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 00111 22222344555566788999999999998888887654
No 124
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=67.66 E-value=57 Score=34.37 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhcccccCCCCCCCCC
Q 005551 126 PQNALRLCAEQLSKSYDSRFGGFGSAPK 153 (691)
Q Consensus 126 ~~~~~~~~~~~l~~~~D~~~GGfg~apK 153 (691)
+....+++++.+.+..+...|||+..|-
T Consensus 45 ~~~~~~~~i~~l~~~q~~~~Ggf~~~~~ 72 (286)
T cd02890 45 DDENKDEIIDFIYSCQVNEDGGFGGGPG 72 (286)
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 4456788888888877345699998753
No 125
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=67.46 E-value=21 Score=31.51 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhccCCCCce
Q 005551 247 SYICRDILDYLRRDMIGPGGEI 268 (691)
Q Consensus 247 ~~~A~~~~~~l~~~m~~~~Ggf 268 (691)
...++++++||++ ++.++|||
T Consensus 91 ~~~~~~a~~~l~~-~Q~~dGg~ 111 (113)
T PF13249_consen 91 EEAVRKAVDWLLS-CQNPDGGW 111 (113)
T ss_dssp HTTHCCHHHHHHH-TB-TTSSB
T ss_pred cHHHHHHHHHHHH-hcCCCCCC
Confidence 7788999999998 66789998
No 126
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=65.67 E-value=59 Score=35.22 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-CCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc
Q 005551 424 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 502 (691)
Q Consensus 424 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~-~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~ 502 (691)
+..++--+...+|++++-+. +|.+--+- +++.+. .-+...=-=+|.-|...|++.++++||+.|.+..+.+.++=.
T Consensus 241 ~~~~~dVK~sldym~~~rfp--sGNyP~s~-~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl 317 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFP--SGNYPSSE-GNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL 317 (403)
T ss_pred hhHHHhhhhHHHHHHHccCC--CCCCCccc-CCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 56778888899999877654 34333221 111100 000001112578899999999999999999999999876622
Q ss_pred cccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 005551 503 DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 566 (691)
Q Consensus 503 D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~ 566 (691)
=+++-|. -+| -+||+- .++.|+++|++ .+|..+|.+..+
T Consensus 318 Lkkg~Gi-----------------chG--vaGNaY---vFLsLyRLT~d---~kYlyRA~kFae 356 (403)
T KOG2787|consen 318 LKKGVGI-----------------CHG--VAGNAY---VFLSLYRLTGD---MKYLYRAKKFAE 356 (403)
T ss_pred hhcCCcc-----------------ccc--ccCchh---hhHhHHHHcCc---HHHHHHHHHHHH
Confidence 1111111 111 356663 46678888986 789999955433
No 127
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=65.55 E-value=6.7 Score=34.17 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=39.2
Q ss_pred HHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeecccc
Q 005551 10 GVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYF 68 (691)
Q Consensus 10 ~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~gTY~ 68 (691)
++++-++.++.-++||.++-|++.+.| |-.|-|..+|+ ++|+...-...+
T Consensus 37 ~l~~~~~~~v~~~~id~d~~~~l~~~~--------~v~~vPt~~i~-~~g~~v~~~~g~ 86 (97)
T cd02949 37 KVIDEFDGAVHFVEIDIDEDQEIAEAA--------GIMGTPTVQFF-KDKELVKEISGV 86 (97)
T ss_pred HHHHHhCCceEEEEEECCCCHHHHHHC--------CCeeccEEEEE-ECCeEEEEEeCC
Confidence 566777778999999999999877666 66799999999 589887544433
No 128
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=65.38 E-value=25 Score=37.71 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=51.4
Q ss_pred CCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCC
Q 005551 380 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPS 458 (691)
Q Consensus 380 P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~-~g~~ 458 (691)
.-+|+..- ..-|.-|+++|+.++| ++|.+++.+..+||++-.+. +|++-..|- .+.-
T Consensus 34 ~TiDN~aT----~~ei~fLa~~y~~t~d----------------~~y~~A~~kgl~ylL~aQyp--nGGWPQ~yP~~~~Y 91 (289)
T PF09492_consen 34 STIDNDAT----TTEIRFLARVYQATKD----------------PRYREAFLKGLDYLLKAQYP--NGGWPQFYPLRGGY 91 (289)
T ss_dssp CE-GGGTT----HHHHHHHHHHHHHCG-----------------HHHHHHHHHHHHHHHHHS-T--TS--BSECS--SGG
T ss_pred CcccChhH----HHHHHHHHHHHHHhCC----------------hHHHHHHHHHHHHHHHhhCC--CCCCCccCCCCCCC
Confidence 34565522 3567789999999988 89999999999999998886 677776652 1111
Q ss_pred CCCCCcccHH--HHHHHHHHHHHHcCCh
Q 005551 459 KAPGFLDDYA--FLISGLLDLYEFGSGT 484 (691)
Q Consensus 459 ~~~~~l~DyA--~li~all~Ly~~Tgd~ 484 (691)
...-+.+|-| -++.=|.+.++..++.
T Consensus 92 ~~~ITfNDdam~~vl~lL~~v~~~~~~~ 119 (289)
T PF09492_consen 92 HDHITFNDDAMVNVLELLRDVAEGKGDF 119 (289)
T ss_dssp GGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred CCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence 1223344554 4566677777766655
No 129
>PRK13270 treF trehalase; Provisional
Probab=65.02 E-value=2.3e+02 Score=33.31 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=78.1
Q ss_pred hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCC
Q 005551 386 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP 461 (691)
Q Consensus 386 ilt~WNal~i~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~~~~ 461 (691)
+.++-|++++. .|++.++.+|+... ..+|.+.|.+..+.|.+.||+++.|.++.. .+.++
T Consensus 347 ipVDLNaiL~~~e~~LA~~a~~lG~~~~------------a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~~~---- 410 (549)
T PRK13270 347 IPIDLNAFLYKLESAIANISALKGEKET------------EALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQ---- 410 (549)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhccCcccCeEEecccccCc----
Confidence 34467888776 47777888886321 156888999999999999999877766543 22322
Q ss_pred CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCC--CCChHHHHH
Q 005551 462 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA--EPSGNSVSV 539 (691)
Q Consensus 462 ~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a--~PS~nsv~a 539 (691)
. + .+.+.+++=|+-=.-++ +.|..+.+.+..+|.. .||.-.+..+ ....-|++ =|-.+-+++
T Consensus 411 --~-~-~~s~a~f~PLwaG~a~~---~qa~~l~~~l~~~ll~--pGGl~tS~~~-------sgqQWD~PN~WaPlqwmii 474 (549)
T PRK13270 411 --L-A-LFSAAAIVPLYVGMANH---EQADRLANAVRSRLLT--PGGILASEYE-------TGEQWDKPNGWAPLQWMAI 474 (549)
T ss_pred --c-c-cccHHHHHHHHhCCCCH---HHHHHHHHHHHHhccc--CCCcCCCCCC-------CcccCCCCCCCccHHHHHH
Confidence 1 2 24567777777533333 5577777777767754 3443332211 11122332 355666777
Q ss_pred HHHHHHH
Q 005551 540 INLVRLA 546 (691)
Q Consensus 540 ~~LlrL~ 546 (691)
..|.+.+
T Consensus 475 eGL~ryG 481 (549)
T PRK13270 475 QGFKMYG 481 (549)
T ss_pred HHHHHcC
Confidence 7776644
No 130
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=64.53 E-value=1.2e+02 Score=35.19 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=56.7
Q ss_pred cchhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCC
Q 005551 384 DKVIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSK 459 (691)
Q Consensus 384 dkilt~WNal~i~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~-~~g~~~ 459 (691)
+-|-++-|+++.. .|++.++.+|+.... ..|.+.|.+..+.|.+.||+++.|.++... ..++..
T Consensus 303 ~iipVDLNa~L~~~e~~LA~~a~~lG~~~~a------------~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~~~~~~~ 370 (512)
T PF01204_consen 303 DIIPVDLNAILYRNEKDLAEFAELLGDQEKA------------EEYRQRAEERKEAINQYLWDEEDGFYYDYDLRTGKRS 370 (512)
T ss_dssp CEE-HHHHHHHHHHHHHHHHHHHHTT-HHHH------------HHHHHHHHHHHHHHHHHTEETTTTEE--EETTTTEEG
T ss_pred eecCchHHHHHHHHHHHHHHHHHHcCchhHH------------HHHHHHHHHHHHHHHHhCccCCCCeEEeeeCCCCCCc
Confidence 3344577888766 688899999974221 579999999999999999998888766532 333221
Q ss_pred CCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q 005551 460 APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 501 (691)
Q Consensus 460 ~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F 501 (691)
.. +.+.+++=|+--.-++ +.|.++...++..+
T Consensus 371 ~~-------~~~a~f~PL~ag~a~~---~qa~~~~~~~l~~~ 402 (512)
T PF01204_consen 371 PV-------FSPANFLPLWAGIASP---EQAERLVARALDYL 402 (512)
T ss_dssp G---------BGGGGHHHHTT-S-H---HHHHHHHHHHHHHC
T ss_pred cc-------ccHHHHHHHHHhhcCH---hhhhhHHHHHHHHH
Confidence 11 2233344443322222 33666666666665
No 131
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=62.52 E-value=9.8 Score=32.74 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=35.2
Q ss_pred HHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcce
Q 005551 10 GVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 62 (691)
Q Consensus 10 ~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf 62 (691)
++++.++..+.-++||-++-+++-+.| |-.|+|..+|+. +|++.
T Consensus 36 ~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~i~~~Pt~~~~~-~g~~~ 79 (96)
T cd02956 36 RLAEEYQGQFVLAKVNCDAQPQIAQQF--------GVQALPTVYLFA-AGQPV 79 (96)
T ss_pred HHHHHhCCcEEEEEEeccCCHHHHHHc--------CCCCCCEEEEEe-CCEEe
Confidence 455555666778999999988877766 778999999996 99876
No 132
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=62.16 E-value=2e+02 Score=29.82 Aligned_cols=37 Identities=24% Similarity=0.140 Sum_probs=27.2
Q ss_pred CchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005551 220 FEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDY 256 (691)
Q Consensus 220 fEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~ 256 (691)
.-+-+-.-|..+...+.+|.+|||+.|.+.|.++++-
T Consensus 51 ~~~~~~~~a~a~~~lAlay~~Tgd~~YA~~a~~iL~~ 87 (272)
T PF05426_consen 51 DYSRLQRDADAAYALALAYYLTGDEKYADKAAEILNA 87 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566788889999999999999998877776653
No 133
>PRK10996 thioredoxin 2; Provisional
Probab=61.61 E-value=13 Score=35.07 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=37.2
Q ss_pred HHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCccee
Q 005551 10 GVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 63 (691)
Q Consensus 10 ~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~ 63 (691)
++++-++.++.-+|||.++-|++.+.| |-.|.|..+|. .+|+.+.
T Consensus 76 ~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~V~~~Ptlii~-~~G~~v~ 120 (139)
T PRK10996 76 DVAAERSGKVRFVKVNTEAERELSARF--------RIRSIPTIMIF-KNGQVVD 120 (139)
T ss_pred HHHHHhCCCeEEEEEeCCCCHHHHHhc--------CCCccCEEEEE-ECCEEEE
Confidence 467777888888999999999888777 77899998876 6899763
No 134
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=61.56 E-value=95 Score=38.15 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=44.5
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 005551 386 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 452 (691)
Q Consensus 386 ilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~ 452 (691)
-+++|-+++...|++.+..++.... ..+|.+.+..+.+.|.+.+||+++|.++-.
T Consensus 559 Dl~sWMa~~a~~M~~IA~~L~~~d~------------~~ef~~~~~~i~~~l~~~hWdeedgfYyD~ 613 (801)
T PF03200_consen 559 DLTSWMAFFALNMARIALELGKEDD------------AYEFFEHFEYISDALNKLHWDEEDGFYYDV 613 (801)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCccc------------HHHHHHHHHHHHHHHHHhcCCcccCceeee
Confidence 3689999999999999999986311 135779999999999999999988866654
No 135
>PLN02345 endoglucanase
Probab=59.11 E-value=3.3e+02 Score=31.35 Aligned_cols=118 Identities=10% Similarity=-0.032 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCccc-------------------HHHHHHHHHHHHHHcC
Q 005551 424 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLDD-------------------YAFLISGLLDLYEFGS 482 (691)
Q Consensus 424 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~--~~~l~D-------------------yA~li~all~Ly~~Tg 482 (691)
+++++.++=..+|+++-. + .+|.+++...++.... ...+++ -+.++-+|...+.+-.
T Consensus 82 ~~~ldelkw~~Dyllk~~-~-~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk 159 (469)
T PLN02345 82 DSAKDSLKWITDYLINAH-P-SENVLYIQVGDPKLDHKCWERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFK 159 (469)
T ss_pred HHHHHHHhHHHHHHHHhc-C-CCCeEEEEecCCCCCcccCCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 788999999999998754 3 3577887644432110 011121 1334555555555554
Q ss_pred --Ch----HHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCC--hHHHHHHHHHHHHHHhCCCCc
Q 005551 483 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAGSKS 554 (691)
Q Consensus 483 --d~----~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS--~nsv~a~~LlrL~~lt~~~~~ 554 (691)
|+ ++|+.|+++++.+..+ .|.|..... +. .+..+| -+-.++++-..|+..||+
T Consensus 160 ~~D~~YA~~lL~~Ak~ly~fa~~~-----~g~y~~~~~-~~----------~~~Y~s~~~~DEl~WAAawLy~ATgd--- 220 (469)
T PLN02345 160 SSDSTYSDTLLKHAKQLFNFADKY-----RGSYSESIP-EV----------QDYYNSTGYGDELLWAASWLYHATGD--- 220 (469)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCC-cc----------CCCCCCcccccHHHHHHHHHHHHhCC---
Confidence 44 4688888888888664 122221100 00 001111 112577777889999996
Q ss_pred hHHHHHHH
Q 005551 555 DYYRQNAE 562 (691)
Q Consensus 555 ~~y~~~A~ 562 (691)
..|.+.+.
T Consensus 221 ~~Yl~~~~ 228 (469)
T PLN02345 221 KTYLAYVT 228 (469)
T ss_pred HHHHHHHH
Confidence 67888774
No 136
>PLN02266 endoglucanase
Probab=58.50 E-value=3.5e+02 Score=31.48 Aligned_cols=125 Identities=11% Similarity=-0.009 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-----------CC----------CcccHHHHHHHHHHHHHHcC
Q 005551 424 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------PG----------FLDDYAFLISGLLDLYEFGS 482 (691)
Q Consensus 424 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~-----------~~----------~l~DyA~li~all~Ly~~Tg 482 (691)
+++|+.++=..+|+++-... +|.++|...++.... .+ -.+--+.++-+|...+.+-.
T Consensus 130 pd~Ldelkw~~D~llk~~~~--~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vfk 207 (510)
T PLN02266 130 QNAKDAIRWATDYLLKATAH--PDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVFR 207 (510)
T ss_pred HHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 78999999999999975543 577888654431100 00 11122334555555555554
Q ss_pred --Ch----HHHHHHHHHHHHHHHhcccccCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchH
Q 005551 483 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDY 556 (691)
Q Consensus 483 --d~----~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~ 556 (691)
|+ +.|+.|+++++....+ .|.|....... ...+..+.-+-.-..+++-..|+.-||+ ..
T Consensus 208 ~~D~~yA~~~L~~Ak~ly~fa~~~-----~g~y~~~~~~~-------~~~~y~s~s~~~DEl~WAAawLy~ATGd---~~ 272 (510)
T PLN02266 208 KSDPTYSKLLVRRAIRVFQFADKY-----RGAYSNGLKPD-------VCPFYCSYSGYQDELLWGAAWLHKATKN---PT 272 (510)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCccCCCCcc-------cCCCcccCCcchHHHHHHHHHHHHHhCC---HH
Confidence 44 4588888888887543 12221110000 0000000000122566667788999986 77
Q ss_pred HHHHHHHHH
Q 005551 557 YRQNAEHSL 565 (691)
Q Consensus 557 y~~~A~~~l 565 (691)
|.+.++...
T Consensus 273 Yl~~~~~~~ 281 (510)
T PLN02266 273 YLNYIQVNG 281 (510)
T ss_pred HHHHHHHHH
Confidence 888876543
No 137
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=54.64 E-value=19 Score=32.65 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=30.3
Q ss_pred HHHHHHHhcc---ceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceee
Q 005551 9 EGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 64 (691)
Q Consensus 9 ~~vA~~lN~~---Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~ 64 (691)
+++.++++++ |.+|-+|. ...+-+.| |..|.|.++++.++|+..+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~--------~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 68 ENALAWLARHGNPYAAVGFDP--DGRVGIDL--------GVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred HHHHHHHHhcCCCCceEEECC--cchHHHhc--------CCCCCCeEEEECCCceEEEE
Confidence 3455555543 55555553 33444444 77789999999999998754
No 138
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=54.38 E-value=95 Score=34.51 Aligned_cols=145 Identities=21% Similarity=0.269 Sum_probs=74.5
Q ss_pred hHHHH-----HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec------CCCC
Q 005551 390 WNGLV-----ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR------NGPS 458 (691)
Q Consensus 390 WNal~-----i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~------~g~~ 458 (691)
|.+-| |+-|++||..++| +.||..|.++..--+ +.. .+|++...+- +.-|
T Consensus 418 W~SAMaQGhaISvL~RAy~h~~D----------------e~yL~sAa~al~pyk--~~S-~dgGV~a~Fm~K~~WYEEYP 478 (594)
T KOG3760|consen 418 WHSAMAQGHAISVLTRAYKHFND----------------EKYLKSAAKALKPYK--INS-SDGGVRAEFMGKNIWYEEYP 478 (594)
T ss_pred hHhhhhcccchHHHHHHHHhcCc----------------HHHHHHHHhhcCCeE--eec-CCCceEEEEccccchhhhcC
Confidence 66554 8899999999998 899998877663221 222 2454444332 2222
Q ss_pred CCC--CCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------HHHhcccccCCccccCCC---CCCccccccccC
Q 005551 459 KAP--GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNT-------QDELFLDREGGGYFNTTG---EDPSVLLRVKED 526 (691)
Q Consensus 459 ~~~--~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~-------~~~~F~D~~~Gg~f~~~~---~~~~l~~r~~~~ 526 (691)
..+ =.++.+.+-+.||.+|=+ |-..+--..|.+|... |+- .+|.-+|.-|+-.- .-.+.+.|+ +
T Consensus 479 TTP~SfVLNGF~YSLiGLYDL~e-Ta~~Kia~EA~~Ly~~Gm~SLK~mLp-LyDTGSGTiYDLRH~~LG~APNLARW-D- 554 (594)
T KOG3760|consen 479 TTPGSFVLNGFLYSLIGLYDLDE-TARAKIAQEAQELYSAGMRSLKQMLP-LYDTGSGTIYDLRHVALGTAPNLARW-D- 554 (594)
T ss_pred CCCcceeehhHHHHhhhhhccch-hhhHHHHHHHHHHHHHHHHHHHhhhe-eeecCCCceeehhhhhhccCcccccc-h-
Confidence 222 234555444444444422 2222333445555433 322 34766666665421 111112232 2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 005551 527 HDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 567 (691)
Q Consensus 527 ~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~ 567 (691)
=.++.+..|..|+.+-.+ +-..+.|++-...
T Consensus 555 -------YHatHvnqL~llatId~d---pv~~~ta~RWkgY 585 (594)
T KOG3760|consen 555 -------YHATHVNQLKLLATIDKD---PVLSKTADRWKGY 585 (594)
T ss_pred -------hhhHHHHHHHHHhhcccc---HHHHHHHHHHHhh
Confidence 235667777777776442 5555666554443
No 139
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=52.87 E-value=23 Score=29.25 Aligned_cols=44 Identities=25% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeec
Q 005551 11 VAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 65 (691)
Q Consensus 11 vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~g 65 (691)
+++-++..+--++||.++.|++.+.| |--|-|..++ +|+..+.|
T Consensus 24 l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~vPt~~~---~g~~~~~G 67 (82)
T TIGR00411 24 VAKEMGDAVEVEYINVMENPQKAMEY--------GIMAVPAIVI---NGDVEFIG 67 (82)
T ss_pred HHHHhcCceEEEEEeCccCHHHHHHc--------CCccCCEEEE---CCEEEEec
Confidence 34445656667899999999877665 7678999876 77754444
No 140
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=52.43 E-value=48 Score=35.12 Aligned_cols=77 Identities=9% Similarity=0.098 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 005551 181 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 260 (691)
Q Consensus 181 ~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~ 260 (691)
++.+.+...+..+.. |-+-+|||--|. ..+-+--.+..|..+.++.+|.... +....+.+++++||.+.
T Consensus 46 ~~~~~l~~g~~~~~~---~q~~dGsf~~w~------~~~~~~~~wlTa~v~~~L~~a~~~~--~v~~~~i~ra~~wL~~~ 114 (292)
T cd02897 46 KALGFLRTGYQRQLT---YKHSDGSYSAFG------ESDKSGSTWLTAFVLKSFAQARPFI--YIDENVLQQALTWLSSH 114 (292)
T ss_pred HHHHHHHHHHHHHHh---ccCCCCCeeccc------CCCCCcchhhHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHHh
Confidence 344444444444443 456688885331 1111346778999999999987432 33467899999999875
Q ss_pred ccCCCCcee
Q 005551 261 MIGPGGEIF 269 (691)
Q Consensus 261 m~~~~Ggfy 269 (691)
+.++|||.
T Consensus 115 -Q~~dG~f~ 122 (292)
T cd02897 115 -QKSNGCFR 122 (292)
T ss_pred -cCCCCCCC
Confidence 68899995
No 141
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=51.57 E-value=1.2e+02 Score=36.42 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhc---cccCCCeEEEE-----ecCCCCC----------CCCCcccHHHHHHHHHHHHHHcC---
Q 005551 424 KEYMEVAESAASFIRRHL---YDEQTHRLQHS-----FRNGPSK----------APGFLDDYAFLISGLLDLYEFGS--- 482 (691)
Q Consensus 424 ~~~l~~A~~~~~~l~~~~---~d~~~g~l~~~-----~~~g~~~----------~~~~l~DyA~li~all~Ly~~Tg--- 482 (691)
.+.+..+..+.+++...+ .+..+.++.+. +.|+... .....+=+.+++.++..+.+..+
T Consensus 362 ~e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~ 441 (641)
T COG3408 362 RELWPSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEE 441 (641)
T ss_pred HHHHHHHHHHHHHHHhcCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccc
Confidence 466778888888888766 22223334332 2222110 01222233457888888888888
Q ss_pred -ChHHHHHHHHHHHHHHHhcccccCCccccCCCCCCcccccc
Q 005551 483 -GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRV 523 (691)
Q Consensus 483 -d~~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~~~~l~~r~ 523 (691)
-++|.+.|+++.+.+.+.||.+ .+||+...+++....|+
T Consensus 442 ~~~~~~~~a~~l~~~F~~~fw~~--~~f~dl~~~~~~~~~r~ 481 (641)
T COG3408 442 DAARLEKIARRLKESFEAKFWNP--TGFYDLALDDKDVPIRP 481 (641)
T ss_pred cHHHHHHHHHHHHHHHHHHhhCc--cchHhhhccCCCcccCc
Confidence 5688999999999999999975 46888776655555544
No 142
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=51.37 E-value=59 Score=36.05 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=10.3
Q ss_pred chhHHHHHHHHHHHHHHHHccCChHHH----HHHHHHHHHHHH
Q 005551 221 EKMLYDQGQLANVYLDAFSLTKDVFYS----YICRDILDYLRR 259 (691)
Q Consensus 221 EKmLydnA~ll~~ya~Ay~~tg~~~y~----~~A~~~~~~l~~ 259 (691)
..+.-.|...+..-.+.|+.|||..|+ ..++++++|+.+
T Consensus 95 ~~~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~ 137 (365)
T PF04685_consen 95 YAWKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS 137 (365)
T ss_dssp ----------------------------EHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHh
Confidence 345545777777778899999998776 478999999998
No 143
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=51.23 E-value=4.1e+02 Score=30.07 Aligned_cols=298 Identities=17% Similarity=0.207 Sum_probs=155.4
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeeccCCccc-----ccCccccc
Q 005551 212 DERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAE-----TEGATRKK 286 (691)
Q Consensus 212 D~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~DADs~~-----~~~~~~~~ 286 (691)
+.+-.|--||--+ +++-.+.-||-++|+..|++.|.+.-+=|+.-+.+|.+==||...-++.. -+++....
T Consensus 166 ~~~~~VNlFEtTI----RvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SSta 241 (546)
T KOG2431|consen 166 EKDRDVNLFETTI----RVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTA 241 (546)
T ss_pred ccccceehhhhhH----HHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchh
Confidence 4445566677655 67777788999999999999999999998888888776556544322110 00110111
Q ss_pred CCceeeechHHHHHHhhhh------HHHHHHHhcccCC---CCcCCCCCCCC-CCccCCcceeeccCCchHHHHhcCCCH
Q 005551 287 EGAFYVWTSKEVEDILGEH------AILFKEHYYLKPT---GNCDLSRMSDP-HNEFKGKNVLIELNDSSASASKLGMPL 356 (691)
Q Consensus 287 EG~yY~wt~~Ei~~~l~~~------~~~~~~~~~i~~~---Gn~~~~~~~d~-~~~~~g~nvL~~~~~~~~~a~~~g~~~ 356 (691)
|=.--.-...++..+.|+. ..+....+++... |-++. . .+| .|.|.+.||-.-....+ .-
T Consensus 242 EvttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi-~-in~~tG~F~~~tI~lGaRgDS-yY------- 311 (546)
T KOG2431|consen 242 EVTTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPI-F-INPNTGLFVGSTITLGARGDS-YY------- 311 (546)
T ss_pred hheeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeE-E-EcCCCCccccceEEeccccch-HH-------
Confidence 1111122334455555531 1233334555332 33221 1 123 46777766632221111 10
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 005551 357 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 436 (691)
Q Consensus 357 ~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~ 436 (691)
| =.| ++.|..- | -+ ..+. .+|.++-+-.-..
T Consensus 312 E---YLl---KQwlQtg-----------~--------~~-------~~l~-----------------~dy~~am~gv~~~ 342 (546)
T KOG2431|consen 312 E---YLL---KQWLQTG-----------K--------SL-------TYLR-----------------DDYIEAMEGVRKH 342 (546)
T ss_pred H---HHH---HHHHHcc-----------c--------ch-------hHHH-----------------HHHHHHHHHHHHH
Confidence 0 001 1111110 0 00 0111 2444444444444
Q ss_pred HHHhccccCCCeEEEE-ecCCCCCCCCCcccHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHhcccccCCc----
Q 005551 437 IRRHLYDEQTHRLQHS-FRNGPSKAPGFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQNTQDELFLDREGGG---- 508 (691)
Q Consensus 437 l~~~~~d~~~g~l~~~-~~~g~~~~~~~l~DyA~li~all~Ly~~Tg---d~~~L~~A~~L~~~~~~~F~D~~~Gg---- 508 (691)
|.++-- | ++.+|-. .-.|.. .....+--..++-|.|.+-...| +.+.++.|++|.+.+-+.+-...+|-
T Consensus 343 Llr~S~-P-~~~~fiGEl~~G~~-fsPKMDHLVCFlpGtL~lG~~~Gl~~~~~hl~lA~~l~~TCyqMY~~~~TGLaPEI 419 (546)
T KOG2431|consen 343 LLRQSK-P-NKLWFIGELPHGLQ-FSPKMDHLVCFLPGTLALGSTNGLPASEEHLELAQELMETCYQMYRQNPTGLAPEI 419 (546)
T ss_pred HHhcCC-C-cceEEEEecccccc-cCcccceEEEeecchhhhccccCCCcchHHHHHHHHHHHHHHHHHccCcCCCCceE
Confidence 443322 2 2333321 223321 11222333344566666655444 44689999999999988875555552
Q ss_pred -cccCCCC--CCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhhhh-hHHHHH
Q 005551 509 -YFNTTGE--DPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM-AVPLMC 583 (691)
Q Consensus 509 -~f~~~~~--~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i~~~p~-~~~~~~ 583 (691)
+|+.... ..++.+.+.+.+---.| ..+..|+-|+++|++ ..|++..=+++++|.... +.|. +++++-
T Consensus 420 v~Fn~~~~~~~~DiyvKp~D~HnLlRP----EtVESlfylYriT~D---~kYqewGW~if~sfekyt-rv~~ggytSi~ 490 (546)
T KOG2431|consen 420 VHFNLYPQPGKNDIYVKPLDRHNLLRP----ETVESLFYLYRITGD---RKYQEWGWEIFQSFEKYT-RVPSGGYTSID 490 (546)
T ss_pred EEEeccCCCccCceeeccchhhcccCh----HHHhhhheeeEecCC---chHHHHhHHHHHHHHHhc-ccCCCCccchh
Confidence 6665432 34455544443221112 467889999999996 689999999999987654 5555 666653
No 144
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=51.01 E-value=26 Score=32.50 Aligned_cols=44 Identities=16% Similarity=0.014 Sum_probs=34.8
Q ss_pred HHHHHH--hccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcce
Q 005551 10 GVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 62 (691)
Q Consensus 10 ~vA~~l--N~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf 62 (691)
++|+-+ .....-+|||.++-|++.+.| |--|-|.-++. .||+++
T Consensus 55 ~~aa~~l~~~~v~~~kVD~d~~~~La~~~--------~I~~iPTl~lf-k~G~~v 100 (120)
T cd03065 55 ELAAQVLEDKGIGFGLVDSKKDAKVAKKL--------GLDEEDSIYVF-KDDEVI 100 (120)
T ss_pred HHHHHHhhcCCCEEEEEeCCCCHHHHHHc--------CCccccEEEEE-ECCEEE
Confidence 444444 556888999999999999999 88899966555 699976
No 145
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=50.96 E-value=1.3e+02 Score=32.06 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeeecc
Q 005551 226 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAED 273 (691)
Q Consensus 226 dnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa~D 273 (691)
-.|..|.++... ++. ..|..++.||.+. ++.+|||.|++|
T Consensus 247 ~TAYALLall~~----~~~---~~a~~iv~WL~~q-r~~~Ggf~sTQd 286 (297)
T cd02896 247 TTAYALLALLKL----GDI---EYANPIARWLTEQ-RNYGGGFGSTQD 286 (297)
T ss_pred HHHHHHHHHHhc----CCc---hhHHHHHHHHHhc-CCCCCCeehHHH
Confidence 345555555543 332 3588999999986 466899999887
No 146
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=50.34 E-value=2.8e+02 Score=32.83 Aligned_cols=138 Identities=10% Similarity=0.060 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecC-CCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccC
Q 005551 428 EVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG 506 (691)
Q Consensus 428 ~~A~~~~~~l~~~~~d~~~g~l~~~~~~-g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~ 506 (691)
+.|+++.....+.+. +|.+-..+.+ |....-+..|---+++.++-++++.|+|..+++.-...+..+++.+.+..+
T Consensus 313 ~~A~~iL~~fa~~~~---~GliPN~~~~~g~~p~YntvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~y~~G~~ 389 (575)
T TIGR01561 313 DEAKEAILKFANLCK---RGLIPNNFIAFGGDPIYNGVDASLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDNYCAGND 389 (575)
T ss_pred HHHHHHHHHHHHHhH---CCCCCCccCCCCCCccCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 566666655555542 3544443322 222233456666799999999999999998886655555555555444211
Q ss_pred CccccCCCCCCccc-----cccccCC---------CCCCCChHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHHHH
Q 005551 507 GGYFNTTGEDPSVL-----LRVKEDH---------DGAEPSGNSVSVINLVRLASI---VAGSKSDYYRQNAEHSLAVFE 569 (691)
Q Consensus 507 Gg~f~~~~~~~~l~-----~r~~~~~---------D~a~PS~nsv~a~~LlrL~~l---t~~~~~~~y~~~A~~~l~~~~ 569 (691)
-..+ .. .+ .++ ..+++.. +|+.---|+.+..+|..++.+ .|+. ...|.+.|+++-+.|.
T Consensus 390 ~~i~-~d-~d-GLi~~g~~lTWMDa~~g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~-a~~y~~~A~~lk~~F~ 465 (575)
T TIGR01561 390 FAIG-MD-ND-LIFHKGAPLTWMDAKVDERAVTPRAGAACEINALWYNALKTAEFLGNELGED-AESLEEKAAGVAKNFA 465 (575)
T ss_pred cEEE-EC-CC-ccEeCCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHH
Confidence 0001 00 01 111 1133322 233334577777776665544 4432 2458888888777776
Q ss_pred HHH
Q 005551 570 TRL 572 (691)
Q Consensus 570 ~~i 572 (691)
...
T Consensus 466 ~~F 468 (575)
T TIGR01561 466 EKF 468 (575)
T ss_pred Hhc
Confidence 544
No 147
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=49.80 E-value=37 Score=31.28 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=37.6
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeeccccCCCCCC-----CCccHHHHHHH
Q 005551 20 VSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKY-----GRPGFKTILRK 85 (691)
Q Consensus 20 v~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~gTY~P~~~~~-----g~~gf~~~L~~ 85 (691)
.-+|||.|+-|++.+.| |--|-|..+|+ -+|+.+.--...+..++. ....|.+|...
T Consensus 48 ~f~kVDvD~~~~la~~~--------~V~~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02954 48 VIYLVDIDEVPDFNKMY--------ELYDPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIET 109 (114)
T ss_pred EEEEEECCCCHHHHHHc--------CCCCCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHH
Confidence 35899999999999999 77789955554 589988654443333321 12356665543
No 148
>PRK10137 alpha-glucosidase; Provisional
Probab=49.14 E-value=2.6e+02 Score=34.27 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=38.1
Q ss_pred chHHHHH---HHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE
Q 005551 389 SWNGLVI---SSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ 450 (691)
Q Consensus 389 ~WNal~i---~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~ 450 (691)
+-|+++. ..|++.++++|+... ..+|.+.|.++.+.|.+.+|+++.|.++
T Consensus 579 DLNsyLy~a~~~LA~LAe~LG~~e~------------A~~~~~~A~~Lr~aIn~~~WDee~GfY~ 631 (786)
T PRK10137 579 DQASYMYSDNHYLAEMATILGKPEE------------AKRYRQLAQQLADYINTCMFDETTGFYY 631 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHHccCCcCCeEE
Confidence 4455554 679999999987321 1468889999999999999998877665
No 149
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=48.32 E-value=29 Score=26.41 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=26.1
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005551 344 DSSASASKLGMPLEKYLNILGECRRKLFD 372 (691)
Q Consensus 344 ~~~~~a~~~g~~~~~~~~~l~~~~~~L~~ 372 (691)
+..++|+.+|++.+.+......+.++|++
T Consensus 22 t~~eIa~~lg~s~~~V~~~~~~al~kLR~ 50 (50)
T PF04545_consen 22 TLEEIAERLGISRSTVRRILKRALKKLRK 50 (50)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCcHHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999999863
No 150
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=47.62 E-value=62 Score=35.89 Aligned_cols=110 Identities=13% Similarity=0.144 Sum_probs=46.1
Q ss_pred cchhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CCeEEEEec-CCCCCC-
Q 005551 384 DKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-THRLQHSFR-NGPSKA- 460 (691)
Q Consensus 384 dkilt~WNal~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~-~g~l~~~~~-~g~~~~- 460 (691)
...-.+.|...|..+.+.++.+||.. |- .+....+++++++++. +|++ +|...+.-. |..-+.
T Consensus 94 ~~~~~D~~~~fVL~vyr~~~~TGD~~----fL--------~~~wp~v~~a~~~~~~--~D~d~dGl~e~~g~~D~TyD~~ 159 (365)
T PF04685_consen 94 VYAWKDLNPKFVLQVYRDYKWTGDRD----FL--------KEMWPAVKKAMDYLLS--WDRDGDGLPENPGHPDQTYDDW 159 (365)
T ss_dssp -----------------------------------------EHHHHHHHHHHHHHH--SB--TTS-BEEET---SSSTT-
T ss_pred ccccccccccccccccccccccccch----hh--------hhHHHHHHHHHHHHHh--hCCCCCCCCCCCCCCccccccC
Confidence 33344556888999999999999821 00 2334588999999987 5543 343332211 110011
Q ss_pred --CCCcccH-----HHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCcccc
Q 005551 461 --PGFLDDY-----AFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 511 (691)
Q Consensus 461 --~~~l~Dy-----A~li~all~Ly~~Tgd~----~~L~~A~~L~~~~~~~F~D~~~Gg~f~ 511 (691)
.| .+-| ..++.++.++.++-|++ +|.+.+++..+.+.+.+|+ |.||.
T Consensus 160 ~~~G-~say~~~L~laAL~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~~LWn---Geyy~ 217 (365)
T PF04685_consen 160 SMYG-PSAYCGGLWLAALRAAAEMAKILGDPELAAKYRELAEKAKKAFNKKLWN---GEYYR 217 (365)
T ss_dssp EEEE-EEHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHSEE---TTEE-
T ss_pred CeeC-CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhC---Hhhee
Confidence 11 1222 34566778888888985 5777888888888888886 45766
No 151
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=46.90 E-value=41 Score=34.58 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=40.6
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005551 297 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 372 (691)
Q Consensus 297 Ei~~~l~----~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~ 372 (691)
.|.++++ .+..++...||+.... + .+..++|+.+|++.+.+.+....++.||+.
T Consensus 169 ~l~~~l~~L~~~er~vl~l~ygl~~~~---------------~-------~t~~EIA~~lgis~~~V~q~~~~al~kLr~ 226 (238)
T TIGR02393 169 QLDEVLETLTERERKVLRMRYGLLDGR---------------P-------HTLEEVGKEFNVTRERIRQIESKALRKLRH 226 (238)
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCCCCC---------------C-------ccHHHHHHHHCCCHHHHHHHHHHHHHHHhh
Confidence 3455554 2567888888874321 1 246799999999999999999999999986
No 152
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=43.26 E-value=6 Score=35.09 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=18.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005551 231 ANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 269 (691)
Q Consensus 231 l~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfy 269 (691)
...++.++...+++.+...++++++||.+.. .++|||-
T Consensus 29 t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q-~~dG~w~ 66 (109)
T PF13243_consen 29 TAALILALAAAGDAAVDEAIKKAIDWLLSHQ-NPDGGWG 66 (109)
T ss_dssp ------------TS-SSBSSHHHHHHHHH----TTS--S
T ss_pred cccccccccccCCCCcHHHHHHHHHHHHHhc-CCCCCCC
Confidence 3334445555578889999999999999965 6788883
No 153
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=43.22 E-value=3.2e+02 Score=29.94 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=78.4
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCC-C---CCCcccHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhcccc
Q 005551 431 ESAASFIRRHLYDEQTHRLQHSFRNGPSK-A---PGFLDDYAFLISGLLDLYEFGS--GTKWLVWAIELQNTQDELFLDR 504 (691)
Q Consensus 431 ~~~~~~l~~~~~d~~~g~l~~~~~~g~~~-~---~~~l~DyA~li~all~Ly~~Tg--d~~~L~~A~~L~~~~~~~F~D~ 504 (691)
.++.+|.++|+..+++|.+-+.+..+... . ..=.|+=-+.+.||+...+..| ...|+..|+.+...+.++-..
T Consensus 75 d~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~~~~y~~~A~~~~~~i~~~~v~- 153 (342)
T PF01270_consen 75 DRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDGAYNYLAEALAIINAIKTHEVN- 153 (342)
T ss_dssp HHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHEE-
T ss_pred HHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHhheeC-
Confidence 46778888998855567666665433221 1 1233444688999999999999 558999999999998777654
Q ss_pred cCCccccCCCC-----CCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 005551 505 EGGGYFNTTGE-----DPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 572 (691)
Q Consensus 505 ~~Gg~f~~~~~-----~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~~~~~~y~~~A~~~l~~~~~~i 572 (691)
.|...-.+.+ +...+++ ||=- +.-.+..+++.+++ ..|.+.++..+..+....
T Consensus 154 -~g~~~llpG~~~f~~~~~~~~n---------pSY~--~~pa~~~f~~~~~~---~~W~~v~~~~~~ll~~~~ 211 (342)
T PF01270_consen 154 -PGRYVLLPGDWGFNSDDYWTTN---------PSYF--MPPAFRAFAAATGD---PRWNEVADSSYALLQKAS 211 (342)
T ss_dssp -TTEEEECSSSSSCBTTSEEEEE---------GGGS---HHHHHHHHHHHCC---THHHHHHHHHHHHHHHHH
T ss_pred -CCceEEeccccccCCCCceEeC---------hhhc--cHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhc
Confidence 3322222211 1111122 3322 22456688899885 678888887777655443
No 154
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=43.20 E-value=42 Score=32.17 Aligned_cols=49 Identities=24% Similarity=0.183 Sum_probs=35.7
Q ss_pred HHHHHHhccceE-EeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCc-ceeeccc
Q 005551 10 GVAKLLNDWFVS-IKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK-PLMGGTY 67 (691)
Q Consensus 10 ~vA~~lN~~Fv~-iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~-Pf~~gTY 67 (691)
++|+-+ .+++- +|||.+|-||+.+.| +--+=|.++|+--+|+ ...-+|-
T Consensus 47 ~la~~~-~~~~~~~kVDVDe~~dla~~y--------~I~~~~t~~~ffk~g~~~vd~~tG 97 (142)
T PLN00410 47 SVAETI-KNFAVIYLVDITEVPDFNTMY--------ELYDPCTVMFFFRNKHIMIDLGTG 97 (142)
T ss_pred HHHHHc-CCceEEEEEECCCCHHHHHHc--------CccCCCcEEEEEECCeEEEEEecc
Confidence 445554 34555 999999999999999 5336677776888888 6666665
No 155
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=43.12 E-value=45 Score=38.67 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=41.2
Q ss_pred HHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005551 298 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 372 (691)
Q Consensus 298 i~~~l~----~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~ 372 (691)
|.++|. .+..++..+||+.... ..++.++++.+|++.+++.++-.++..||+.
T Consensus 441 L~~aL~~L~eREr~VI~lRyGL~~~e----------------------~~TL~EIa~~lGVSrERVRQIe~kAL~KLR~ 497 (509)
T PRK05901 441 LQEVLETLSEREAGVIRMRFGLTDGQ----------------------PKTLDEIGQVYGVTRERIRQIESKTLRKLRH 497 (509)
T ss_pred HHHHHhhCCHHHHHHHHHHhhccCCC----------------------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 455544 2677889999995321 1257899999999999999999999999986
No 156
>PRK13683 hypothetical protein; Provisional
Probab=41.33 E-value=29 Score=30.20 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=35.7
Q ss_pred eEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcc
Q 005551 20 VSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 61 (691)
Q Consensus 20 v~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~P 61 (691)
+||-|-|-|--|...+|++..|+|. .|=|-.+=||-|+.+
T Consensus 13 ~P~SVQRKe~edA~alYq~I~~am~--sg~P~llELtCek~~ 52 (87)
T PRK13683 13 MPISVQRKEAEDAEALYQQIRQAMR--SGNPRLLELTCEKVE 52 (87)
T ss_pred cceEEEeccHHHHHHHHHHHHHHHh--cCCCcEEEEEecCcC
Confidence 6899999999999999999999994 489999999987643
No 157
>PRK13272 treA trehalase; Provisional
Probab=39.95 E-value=5.8e+02 Score=30.00 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=61.8
Q ss_pred hchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCC
Q 005551 388 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGF 463 (691)
Q Consensus 388 t~WNal~i~---aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~-~~~g~~~~~~~ 463 (691)
++-|+++.. .|++.++.+|+... ..+|.+.|.+..+.|.+.||++ .|.++.. .+.++.
T Consensus 340 VDLNalL~~~e~~LA~~~~~lG~~~~------------a~~~~~~A~~r~~aI~~~lWde-~G~~~DYD~~~~~~----- 401 (542)
T PRK13272 340 VDLNSLLYHLERTLAQACASSGLAAC------------SQDYAALAQQRKQAIDAHLWNP-AGYYADYDWQTRTL----- 401 (542)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhccCc-CceEEeeccCCCCc-----
Confidence 456888766 47777788876311 1568899999999999999996 6655432 233332
Q ss_pred cccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccccCCcccc
Q 005551 464 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN 511 (691)
Q Consensus 464 l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~~Gg~f~ 511 (691)
.++ +.+.+++=|+-=.-++ +.|.++.+.+..+|.. .||.-.
T Consensus 402 -~~~-~s~a~f~PLwag~a~~---~~a~~l~~~l~~~~l~--~gGlpT 442 (542)
T PRK13272 402 -SEQ-VTAAALYPLFAGLASD---DRAKRTADSVRAQLLR--PGGLAT 442 (542)
T ss_pred -ccc-ccHHHHHHHHcCCCCH---HHHHHHHHHHHHhccC--CCCcCC
Confidence 233 3356777776432232 4567777777666653 355433
No 158
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=39.67 E-value=47 Score=28.14 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=35.2
Q ss_pred HHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcce
Q 005551 10 GVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 62 (691)
Q Consensus 10 ~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf 62 (691)
++++-+|....-++||.++.+.+-+.| |--+.|..+|+ ++|++.
T Consensus 38 ~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~P~~~~~-~~g~~~ 81 (101)
T TIGR01068 38 ELAKEYEGKVKFVKLNVDENPDIAAKY--------GIRSIPTLLLF-KNGKEV 81 (101)
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCcCCEEEEE-eCCcEe
Confidence 566677878889999999888765555 66789999999 888875
No 159
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=39.35 E-value=46 Score=28.56 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=34.5
Q ss_pred HHHHHhc---cceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeeccccC
Q 005551 11 VAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFP 69 (691)
Q Consensus 11 vA~~lN~---~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~gTY~P 69 (691)
+|+.+.. .+.-++||.++.+++-+.| +-.+.|..+|+ ++|++. .+|..
T Consensus 41 ~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~--~~~~G 91 (102)
T cd03005 41 LAKKFNNENPSVKIAKVDCTQHRELCSEF--------QVRGYPTLLLF-KDGEKV--DKYKG 91 (102)
T ss_pred HHHHHhccCCcEEEEEEECCCChhhHhhc--------CCCcCCEEEEE-eCCCee--eEeeC
Confidence 4555544 6888999999988776665 66789987777 788854 34543
No 160
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=38.83 E-value=34 Score=31.39 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=34.1
Q ss_pred HHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceee
Q 005551 10 GVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 64 (691)
Q Consensus 10 ~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~ 64 (691)
++|+-+.....-+|||.++-|.|.+.| |=-|.|.- ++-.||++...
T Consensus 53 ela~e~~~~v~f~kVdid~~~~la~~f--------~V~sIPTl-i~fkdGk~v~~ 98 (111)
T cd02965 53 ELLKAFPGRFRAAVVGRADEQALAARF--------GVLRTPAL-LFFRDGRYVGV 98 (111)
T ss_pred HHHHHCCCcEEEEEEECCCCHHHHHHc--------CCCcCCEE-EEEECCEEEEE
Confidence 455555555567799999999999998 77799954 55568888753
No 161
>PRK09381 trxA thioredoxin; Provisional
Probab=38.47 E-value=49 Score=29.10 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=33.8
Q ss_pred HHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCccee
Q 005551 10 GVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 63 (691)
Q Consensus 10 ~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~ 63 (691)
++++-++..+.=++||.+.-|.+.+.| |-.++|..+|+ ++|++..
T Consensus 45 ~l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~~ 89 (109)
T PRK09381 45 EIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KNGEVAA 89 (109)
T ss_pred HHHHHhCCCcEEEEEECCCChhHHHhC--------CCCcCCEEEEE-eCCeEEE
Confidence 455556666666889999888876665 66789987777 7999764
No 162
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=37.85 E-value=16 Score=31.28 Aligned_cols=44 Identities=32% Similarity=0.480 Sum_probs=28.0
Q ss_pred HHHHHHHhcc---ceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCc
Q 005551 9 EGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 60 (691)
Q Consensus 9 ~~vA~~lN~~---Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~ 60 (691)
++..+.++++ +..+.++.+.+-.+-+ ..|--++|..+++.|||+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 48 EEWKKFLKKNNFPWYNVPFDDDNNSELLK--------KYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp HHHHHHHHTCTTSSEEEETTTHHHHHHHH--------HTT-TSSSEEEEEETTSB
T ss_pred HHHHHHHHhcCCCceEEeeCcchHHHHHH--------HCCCCcCCEEEEECCCCC
Confidence 4555555555 6676666554333322 227678999999999997
No 163
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=37.59 E-value=4.7e+02 Score=31.36 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEe-c--CCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcccc
Q 005551 428 EVAESAASFIRRHLYDEQTHRLQHSF-R--NGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 504 (691)
Q Consensus 428 ~~A~~~~~~l~~~~~d~~~g~l~~~~-~--~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~ 504 (691)
+.|+.....+.++. +.|++.|.. . +|. ..-+..|.-=+.|..+.+.+..|+|..+++........+.+.+.-
T Consensus 303 elArg~L~~~a~~~---~~GkIPhe~~~~~~~~-~~Y~tvD~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~- 377 (641)
T COG3408 303 ELARGTLNTLARYS---EPGKIPHEILLSIPGE-PYYNTVDATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWILK- 377 (641)
T ss_pred HHHHHHHHHHHhhc---cCCCCcchhhhcCCCc-ceeccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-
Confidence 57788777777773 368898875 2 232 233455666678889999999999999988877766666665421
Q ss_pred cCCcc-ccCCCC----CCccccccccCCCC---------CCCChHHH---HHHHHHHHHHHhCCC-CchHHHHHHHHHHH
Q 005551 505 EGGGY-FNTTGE----DPSVLLRVKEDHDG---------AEPSGNSV---SVINLVRLASIVAGS-KSDYYRQNAEHSLA 566 (691)
Q Consensus 505 ~~Gg~-f~~~~~----~~~l~~r~~~~~D~---------a~PS~nsv---~a~~LlrL~~lt~~~-~~~~y~~~A~~~l~ 566 (691)
.+.+ |.+..+ +.. ...+++..+. ..---|++ +..++.+++.+.+.. +.+.|.+.|+++.+
T Consensus 378 -~~~~~~~~~~~~l~~~~~-~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~~~~~~~~a~~l~~ 455 (641)
T COG3408 378 -GFDFGFDTYGDGLLEGGS-NQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEEDAARLEKIARRLKE 455 (641)
T ss_pred -cCCccceecCcccccCCC-CCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 1111 211110 000 0111221111 11124556 566788888888721 12678888888888
Q ss_pred HHHHHHH
Q 005551 567 VFETRLK 573 (691)
Q Consensus 567 ~~~~~i~ 573 (691)
.|.....
T Consensus 456 ~F~~~fw 462 (641)
T COG3408 456 SFEAKFW 462 (641)
T ss_pred HHHHHhh
Confidence 8876653
No 164
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=37.30 E-value=56 Score=29.80 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=17.2
Q ss_pred cCCCCCCceEEeCCCCccee
Q 005551 44 YGGGGWPLSVFLSPDLKPLM 63 (691)
Q Consensus 44 ~g~gGWPl~vfltPd~~Pf~ 63 (691)
.|-.|-|.++++.|+|+.+.
T Consensus 95 ~~v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 95 FKIEGIPTLIILDADGEVVT 114 (131)
T ss_pred cCCCCCCEEEEECCCCCEEc
Confidence 47789999999999999764
No 165
>PRK07921 RNA polymerase sigma factor SigB; Reviewed
Probab=37.29 E-value=94 Score=33.88 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=40.6
Q ss_pred HHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005551 298 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 372 (691)
Q Consensus 298 i~~~l~----~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~ 372 (691)
|.++|. .+..++..+||+..+. ..++.++++.+|++.+.+.++-.++..||+.
T Consensus 256 l~~~L~~L~eREr~Vl~~rygl~~~~----------------------~~Tl~eIa~~lgvS~eRVrQIe~~Al~KLr~ 312 (324)
T PRK07921 256 IRSVLATLDEREQQVIRLRFGLDDGQ----------------------PRTLDQIGKLFGLSRERVRQIEREVMSKLRN 312 (324)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCC----------------------CcCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 555554 2567888889985321 1257899999999999999999999999976
No 166
>PRK05949 RNA polymerase sigma factor; Validated
Probab=36.09 E-value=97 Score=33.77 Aligned_cols=54 Identities=9% Similarity=0.170 Sum_probs=41.7
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005551 297 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 372 (691)
Q Consensus 297 Ei~~~l~----~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~ 372 (691)
+|.++|. .+..++...||+..... .+.+++|+.+|++.+.++.++..++++|++
T Consensus 259 ~L~~~L~~L~~rer~Vi~lr~gl~~~e~----------------------~Tl~EIa~~lgiS~erVrq~~~rAl~kLr~ 316 (327)
T PRK05949 259 DLNNLLAELTPQQREVLTLRFGLEDGKE----------------------LSLAKVGERLNLSRERVRQLEHQALAHLRR 316 (327)
T ss_pred HHHHHHHhCCHHHHHHHHHHhccCCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3455554 25678888899864221 257899999999999999999999999987
No 167
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=35.32 E-value=2.2e+02 Score=33.31 Aligned_cols=111 Identities=11% Similarity=0.024 Sum_probs=69.5
Q ss_pred CCCCCcchhhchHHHHHHH---HHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-c
Q 005551 379 RPHLDDKVIVSWNGLVISS---FARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-R 454 (691)
Q Consensus 379 ~P~~Ddkilt~WNal~i~a---La~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~-~ 454 (691)
.|.-.|----.|=|+-.|+ +|+.|-++|| ++....-.+-+.|++.+..-..+|.+..-. -
T Consensus 394 ~PVyhDPpSN~WfG~Q~Wsm~R~AeyYy~tGd----------------~~ak~ildKWv~W~~~~~~~~~dG~f~IPs~L 457 (619)
T PF02011_consen 394 QPVYHDPPSNRWFGMQAWSMERVAEYYYETGD----------------ARAKAILDKWVAWALSNTTVNSDGTFEIPSTL 457 (619)
T ss_dssp SSS-TTTTTTTBTHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHTT-EE-TTS-EEEEEEE
T ss_pred CcccCCCCCCCcccccchhHHHHHHHHHHhcc----------------HHHHHHHHHHHHHHHhhceeCCCCcEecCCCC
Confidence 4444444344577887776 5666677888 667777788888888886443345544311 1
Q ss_pred --CCCCCC---------------CCCcccH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccccc
Q 005551 455 --NGPSKA---------------PGFLDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 505 (691)
Q Consensus 455 --~g~~~~---------------~~~l~Dy---A~li~all~Ly~~Tgd~~~L~~A~~L~~~~~~~F~D~~ 505 (691)
.|+|+. ..+..|- +.++.+|+-....+|+.+..+.|++|++.+.++..|..
T Consensus 458 ~WSGqPDtW~~s~t~N~nLHV~V~~yg~DvGva~S~AktL~yYAA~sg~~~Ak~~Ak~LLD~iW~~~~D~~ 528 (619)
T PF02011_consen 458 EWSGQPDTWTGSPTGNPNLHVTVTDYGQDVGVAGSYAKTLTYYAAKSGDQEAKDTAKQLLDAIWNNYQDDK 528 (619)
T ss_dssp EEES-----TTS----TTEEEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCECTT
T ss_pred cccCCCCCccCCCCCCCceEEEEecCCCchhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhCCCCC
Confidence 344311 1222233 56888999888999999999999999999999887753
No 168
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=34.64 E-value=59 Score=27.20 Aligned_cols=43 Identities=30% Similarity=0.360 Sum_probs=35.8
Q ss_pred HHHHHH--hccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCc
Q 005551 10 GVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 60 (691)
Q Consensus 10 ~vA~~l--N~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~ 60 (691)
++++.+ +..+.-++||.++.|.+-+.| |--+.|..+++.|+++
T Consensus 39 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~~~~~~~~~ 83 (101)
T cd02961 39 KLAKELKGDGKVVVAKVDCTANNDLCSEY--------GVRGYPTIKLFPNGSK 83 (101)
T ss_pred HHHHHhccCCceEEEEeeccchHHHHHhC--------CCCCCCEEEEEcCCCc
Confidence 567777 688999999999988887777 7789999999988863
No 169
>PRK07405 RNA polymerase sigma factor SigD; Validated
Probab=34.12 E-value=1.1e+02 Score=33.07 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=40.7
Q ss_pred HHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005551 298 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 372 (691)
Q Consensus 298 i~~~l~----~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~ 372 (691)
|.+++. .+..++.-.||+.... ..+++++++.+|++.+.+......++.||++
T Consensus 250 l~~al~~L~~rer~Vi~lr~gl~~~~----------------------~~Tl~EIa~~lgiS~erVRqi~~rAl~kLr~ 306 (317)
T PRK07405 250 LERLMEDLTPQQKEVIALRFGLEDGQ----------------------PLTLAKIGERLNISRERVRQIEREALSKLRK 306 (317)
T ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCC----------------------CcCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 555554 2466888889885321 1257899999999999999999999999987
No 170
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=34.08 E-value=55 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=22.7
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHH
Q 005551 344 DSSASASKLGMPLEKYLNILGECRRKL 370 (691)
Q Consensus 344 ~~~~~a~~~g~~~~~~~~~l~~~~~~L 370 (691)
+..++|+.+|+++..+...+..++++|
T Consensus 28 s~~eIa~~l~~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 28 SYAEIAEILGISESTVKRRLRRARKKL 54 (54)
T ss_dssp -HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhhC
Confidence 467899999999999999999998876
No 171
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=34.02 E-value=64 Score=25.58 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=26.4
Q ss_pred cCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005551 342 LNDSSASASKLGMPLEKYLNILGECRRKLF 371 (691)
Q Consensus 342 ~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~ 371 (691)
..+..++|+++|++...+.+.|..+-+||.
T Consensus 23 ~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 23 RITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999988885
No 172
>PRK07598 RNA polymerase sigma factor SigC; Validated
Probab=33.43 E-value=97 Score=35.01 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=42.2
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005551 297 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 372 (691)
Q Consensus 297 Ei~~~l~----~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~ 372 (691)
+|..+|. .+..++.-.|++..+.. .+.+++++.+|++.+.+...+..++.+|++
T Consensus 343 ~L~~~L~~L~~reR~VI~LRygl~d~~~----------------------~Tl~EIA~~LGvS~erVRqie~rAl~KLR~ 400 (415)
T PRK07598 343 DLQHLLADLTSRERDVIRMRFGLADGHT----------------------YSLAEIGRALDLSRERVRQIESKALQKLRQ 400 (415)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCC----------------------CCHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 4566655 25667787888864322 257899999999999999999999999986
Q ss_pred h
Q 005551 373 V 373 (691)
Q Consensus 373 ~ 373 (691)
.
T Consensus 401 ~ 401 (415)
T PRK07598 401 P 401 (415)
T ss_pred h
Confidence 4
No 173
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=32.80 E-value=49 Score=28.26 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.6
Q ss_pred CCCCCCceEEeCCCCccee
Q 005551 45 GGGGWPLSVFLSPDLKPLM 63 (691)
Q Consensus 45 g~gGWPl~vfltPd~~Pf~ 63 (691)
|.-+.|..++++|+|+..+
T Consensus 94 ~~~~~P~~~l~d~~g~v~~ 112 (116)
T cd02966 94 GVRGLPTTFLIDRDGRIRA 112 (116)
T ss_pred CcCccceEEEECCCCcEEE
Confidence 5558999999999998764
No 174
>PLN00119 endoglucanase
Probab=32.19 E-value=8.6e+02 Score=28.23 Aligned_cols=116 Identities=11% Similarity=0.106 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC-----------CCCC---------cccH-HHHHHHHHHHHHHcC
Q 005551 424 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK-----------APGF---------LDDY-AFLISGLLDLYEFGS 482 (691)
Q Consensus 424 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~-----------~~~~---------l~Dy-A~li~all~Ly~~Tg 482 (691)
+..|+.++-..+|+++-.- ..+.+++...+|... ..+. ..|- +-++-+|...+.+-.
T Consensus 117 ~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk 194 (489)
T PLN00119 117 GNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFA 194 (489)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 6789999999999997653 346677654333211 0111 0122 334444555555544
Q ss_pred --ChH----HHHHHHHHHHHHHHh---cccc--cCCccccCCCCCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCC
Q 005551 483 --GTK----WLVWAIELQNTQDEL---FLDR--EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 551 (691)
Q Consensus 483 --d~~----~L~~A~~L~~~~~~~---F~D~--~~Gg~f~~~~~~~~l~~r~~~~~D~a~PS~nsv~a~~LlrL~~lt~~ 551 (691)
|+. .|+.|+++++.+..+ +.+. ..++||.+. +-.-.++++-..|+..||+
T Consensus 195 ~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g~Y~ss-------------------~~~DEl~WAAawLY~aTgd 255 (489)
T PLN00119 195 PSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGGFYASS-------------------GYEDELLWAAAWLHRATND 255 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCC-------------------chhhHHHHHHHHHHHHhCC
Confidence 444 578888888887663 1010 011233221 1112577777889999996
Q ss_pred CCchHHHHHHHH
Q 005551 552 SKSDYYRQNAEH 563 (691)
Q Consensus 552 ~~~~~y~~~A~~ 563 (691)
..|.+.+..
T Consensus 256 ---~~Yl~~~~~ 264 (489)
T PLN00119 256 ---QTYLDYLTQ 264 (489)
T ss_pred ---HHHHHHHHh
Confidence 678876653
No 175
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=31.93 E-value=69 Score=27.76 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=33.7
Q ss_pred HHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcce
Q 005551 10 GVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 62 (691)
Q Consensus 10 ~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf 62 (691)
++|+.+...+.=++||.++.|++-+-| +-.+-|..++. ++|++.
T Consensus 42 ~~a~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 42 EFAKEMDGVIRIGAVNCGDDRMLCRSQ--------GVNSYPSLYVF-PSGMNP 85 (101)
T ss_pred HHHHHhcCceEEEEEeCCccHHHHHHc--------CCCccCEEEEE-cCCCCc
Confidence 467777777667899999988776655 66799998888 788763
No 176
>PLN02993 lupeol synthase
Probab=31.85 E-value=2.6e+02 Score=34.20 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CCeEEEEecCCCC---------CCC
Q 005551 392 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-THRLQHSFRNGPS---------KAP 461 (691)
Q Consensus 392 al~i~aLa~a~~~~~d~~~~~~~~~~~~~~~~~~~l~~A~~~~~~l~~~~~d~~-~g~l~~~~~~g~~---------~~~ 461 (691)
++++.||..++.. +++-...+++.+||++.....+ .|-+-..+++..+ ..-
T Consensus 422 a~a~qAl~~agl~-------------------~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gy 482 (763)
T PLN02993 422 GFAIQALLASDLS-------------------DETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGW 482 (763)
T ss_pred HHHHHHHHHcCCC-------------------cccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCC
Confidence 5788888888621 1345688899999988776321 1222111222211 123
Q ss_pred CCcccHHHHHHHHHHHHHHc
Q 005551 462 GFLDDYAFLISGLLDLYEFG 481 (691)
Q Consensus 462 ~~l~DyA~li~all~Ly~~T 481 (691)
.-.||-|..+.+++.|....
T Consensus 483 p~sDdTAe~lka~l~l~~~~ 502 (763)
T PLN02993 483 QVSDCTAEALKCCMLLSMMP 502 (763)
T ss_pred CcCCchHHHHHHHHHHhhCc
Confidence 45678899999877777654
No 177
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393).
Probab=31.73 E-value=1e+02 Score=32.90 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=39.7
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005551 297 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 371 (691)
Q Consensus 297 Ei~~~l~----~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~ 371 (691)
.|.+++. .+..++...||+... ++ .+.+++|+.+|++.+.+...+..+++||+
T Consensus 242 ~L~~~L~~L~~rer~Vi~lr~gl~~~---------------~~-------~Tl~EIa~~lgiS~erVrq~~~rAl~kLr 298 (298)
T TIGR02997 242 DLESLLAELTPRERQVLRLRFGLDGG---------------EP-------LTLAEIGRRLNLSRERVRQIEAKALRKLR 298 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCC---------------CC-------cCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 3555554 356788888988522 11 35789999999999999999999998873
No 178
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=31.21 E-value=71 Score=37.08 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccCCC
Q 005551 471 ISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 514 (691)
Q Consensus 471 i~all~Ly~~Tgd~----~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~ 514 (691)
...|..+++..|+. .|.++|.++.+.+.+.|||++.|.||+-..
T Consensus 317 e~~LA~~a~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~ 364 (512)
T PF01204_consen 317 EKDLAEFAELLGDQEKAEEYRQRAEERKEAINQYLWDEEDGFYYDYDL 364 (512)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE--EET
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhCccCCCCeEEeeeC
Confidence 34566778888865 699999999999999999999999987543
No 179
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=30.94 E-value=3.7e+02 Score=28.43 Aligned_cols=114 Identities=11% Similarity=0.091 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcccccCCCCCCCC-CCCChh-HHHHHHHhHhhhcccCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcEE
Q 005551 130 LRLCAEQLSKSYDSRFGGFGSAP-KFPRPV-EIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 207 (691)
Q Consensus 130 ~~~~~~~l~~~~D~~~GGfg~ap-KFP~~~-~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~ 207 (691)
++++++.+.+...+ .|||+..| |=++.. +.--+.-...... .. .....+.+..-+..... .|||.
T Consensus 150 ~~~~~~~l~~~q~~-dGGF~~~~~~es~~~~t~cavasL~llg~----~~-~~~~~~~~~~L~~~q~~-------~GGf~ 216 (287)
T cd02894 150 VDKAVDYLLSCYNF-DGGFGCRPGAESHAGQIFCCVGALAILGS----LD-LIDRDRLGWWLCERQLP-------SGGLN 216 (287)
T ss_pred HHHHHHHHHHcCCC-CCCcCCCCCCCCchhHHHHHHHHHHHcCc----cc-ccCHHHHHHHHHHhCCC-------CCCcC
Confidence 56677777766544 59999987 444432 1111111111100 00 01122333333333322 58884
Q ss_pred EEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 005551 208 RYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 269 (691)
Q Consensus 208 RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfy 269 (691)
.+..+.||- .|. -++++-.+. .+...+.+ .....+||.+....+.|||-
T Consensus 217 ----gr~~k~~D~---~ys----f~~~a~l~~-l~~~~~~~-~~~l~~~l~~~q~~~~GGf~ 265 (287)
T cd02894 217 ----GRPEKLPDV---CYS----WWVLSSLKI-IGRLHWIN-KNKLKNFILACQDEEDGGFA 265 (287)
T ss_pred ----CCCCCCCch---hHh----hHHHHHHHH-hccccccC-HHHHHHHHHHhcCCCCCCcC
Confidence 223334542 222 222232233 34444444 78899999997766789994
No 180
>PRK09210 RNA polymerase sigma factor RpoD; Validated
Probab=30.57 E-value=1.3e+02 Score=33.37 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=41.7
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005551 297 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 372 (691)
Q Consensus 297 Ei~~~l~----~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~ 372 (691)
.|.++|. .+..++..+||+..+.. .++.++++.+|++.+.+.++..++..||+.
T Consensus 298 ~l~~~l~~L~~rEr~Vl~lrygl~~~~~----------------------~tl~EIa~~lgvs~erVrQi~~~Al~kLr~ 355 (367)
T PRK09210 298 QLEDVLDTLTDREENVLRLRFGLDDGRT----------------------RTLEEVGKVFGVTRERIRQIEAKALRKLRH 355 (367)
T ss_pred HHHHHHHhCCHHHHHHHHHHhccCCCCC----------------------ccHHHHHHHHCCCHHHHHHHHHHHHHHHhC
Confidence 4555554 25678888899853211 247899999999999999999999999986
Q ss_pred h
Q 005551 373 V 373 (691)
Q Consensus 373 ~ 373 (691)
.
T Consensus 356 ~ 356 (367)
T PRK09210 356 P 356 (367)
T ss_pred h
Confidence 3
No 181
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=30.41 E-value=66 Score=27.73 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCC--CCCCceEEeCCC
Q 005551 9 EGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPD 58 (691)
Q Consensus 9 ~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~--gGWPl~vfltPd 58 (691)
.+||+-+...+.=++||.++-|++-+.| |- .+.|.-++....
T Consensus 35 ~~vA~~~~~~v~f~~vd~~~~~~~~~~~--------~i~~~~~P~~~~~~~~ 78 (103)
T cd02982 35 KEVAKKFKGKLLFVVVDADDFGRHLEYF--------GLKEEDLPVIAIINLS 78 (103)
T ss_pred HHHHHHhCCeEEEEEEchHhhHHHHHHc--------CCChhhCCEEEEEecc
Confidence 4678888878889999999987766655 53 399998888873
No 182
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=30.12 E-value=4.6e+02 Score=32.40 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHcC--Ch--HHHHHHHHHHHHHHHhcccccCCccccCCCC
Q 005551 468 AFLISGLLDLYEFGS--GT--KWLVWAIELQNTQDELFLDREGGGYFNTTGE 515 (691)
Q Consensus 468 A~li~all~Ly~~Tg--d~--~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~~ 515 (691)
|++...++.+....+ |+ +|.+.+..|.+.+.+..||++.|.||+....
T Consensus 565 a~~a~~M~~IA~~L~~~d~~~ef~~~~~~i~~~l~~~hWdeedgfYyD~~~~ 616 (801)
T PF03200_consen 565 AFFALNMARIALELGKEDDAYEFFEHFEYISDALNKLHWDEEDGFYYDVGLH 616 (801)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcccCceeeeccc
Confidence 344455555554444 33 4569999999999999999999988886543
No 183
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=29.03 E-value=3.1e+02 Score=28.22 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=33.7
Q ss_pred HHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcce
Q 005551 10 GVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 62 (691)
Q Consensus 10 ~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf 62 (691)
++|+-+...+.-.+||.++.|++-+.| |-.|.|..+++. +|+++
T Consensus 76 ~la~~~~~~v~~~~VD~~~~~~l~~~~--------~I~~~PTl~~f~-~G~~v 119 (224)
T PTZ00443 76 RLAKALKGQVNVADLDATRALNLAKRF--------AIKGYPTLLLFD-KGKMY 119 (224)
T ss_pred HHHHHcCCCeEEEEecCcccHHHHHHc--------CCCcCCEEEEEE-CCEEE
Confidence 466666665556789999988877776 778999988876 78865
No 184
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=28.52 E-value=79 Score=37.61 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=41.5
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005551 297 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 372 (691)
Q Consensus 297 Ei~~~l~----~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~ 372 (691)
.|.++|. .+..++..+||+.... ..++.++++.+|++.+++.+.-.++..||+.
T Consensus 549 ~l~~~l~~L~~rE~~Vl~~r~g~~~~~----------------------~~tl~ei~~~lgvs~eRVrQie~~al~kLr~ 606 (619)
T PRK05658 549 ATTDVLASLTPREAKVLRMRFGIDMNT----------------------DHTLEEVGKQFDVTRERIRQIEAKALRKLRH 606 (619)
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCC----------------------CccHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 3445554 2567888889984211 1247899999999999999999999999987
Q ss_pred h
Q 005551 373 V 373 (691)
Q Consensus 373 ~ 373 (691)
.
T Consensus 607 ~ 607 (619)
T PRK05658 607 P 607 (619)
T ss_pred h
Confidence 4
No 185
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=27.69 E-value=87 Score=26.62 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=34.9
Q ss_pred HHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCccee
Q 005551 10 GVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 63 (691)
Q Consensus 10 ~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~ 63 (691)
++++-++..+.-++||.++-|++-+.| |--|-|..+|+ .+|+...
T Consensus 38 ~l~~~~~~~i~~~~vd~~~~~~~~~~~--------~i~~~Pt~~~~-~~g~~~~ 82 (97)
T cd02984 38 ELAKEAFPSVLFLSIEAEELPEISEKF--------EITAVPTFVFF-RNGTIVD 82 (97)
T ss_pred HHHHHhCCceEEEEEccccCHHHHHhc--------CCccccEEEEE-ECCEEEE
Confidence 344455668899999999988877766 77789998888 5899863
No 186
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=27.56 E-value=1.2e+02 Score=32.14 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=38.5
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHH
Q 005551 344 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 403 (691)
Q Consensus 344 ~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~ 403 (691)
+.+++|+.+|+++..+...+..+|++|.+.+.. +..+. .=+.-++.++..|..
T Consensus 126 s~~EIA~~lg~s~~tVr~~l~RAr~~Lr~~~~~---~~~~~----~~~~~~~~~f~~a~~ 178 (281)
T TIGR02957 126 PYEEIASIVGKSEANCRQLVSRARRHLDARRPR---FEVSR----EESRQLLERFVEAAQ 178 (281)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCC---CCCCh----HHHHHHHHHHHHHHH
Confidence 467899999999999999999999999875432 11111 123557777777765
No 187
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=27.10 E-value=1.6e+02 Score=33.10 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=58.0
Q ss_pred CCccCCCCHHHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcceeeccccCCCCCCCCccHH
Q 005551 1 MEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFK 80 (691)
Q Consensus 1 M~~esF~d~~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf~~gTY~P~~~~~g~~gf~ 80 (691)
|++-+|.|.-|++.+-..||.|||+.-+- -|.+|.++- -----|-..|+.-.|.|+...|=|- +--
T Consensus 36 l~r~~w~d~~vs~~ls~~fVaIkiqags~-----aa~qFs~IY-p~v~vPs~ffIg~sGtpLevitg~v--------~ad 101 (506)
T KOG2507|consen 36 LNRLTWTDASVSDSLSKYFVAIKIQAGSV-----AATQFSAIY-PYVSVPSIFFIGFSGTPLEVITGFV--------TAD 101 (506)
T ss_pred HhhccchhhhhhhhhhcceEEEEeccCch-----hhhhhhhhc-ccccccceeeecCCCceeEEeeccc--------cHH
Confidence 56779999999999999999999998752 333443321 2234677778888888888777665 345
Q ss_pred HHHHHHHHHHHh
Q 005551 81 TILRKVKDAWDK 92 (691)
Q Consensus 81 ~~L~~i~~~w~~ 92 (691)
+|..+|..+|.-
T Consensus 102 eL~~~i~Kv~~~ 113 (506)
T KOG2507|consen 102 ELASSIEKVWLG 113 (506)
T ss_pred HHHHHHHHHHHH
Confidence 889999999973
No 188
>PHA02125 thioredoxin-like protein
Probab=27.08 E-value=1.3e+02 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=26.8
Q ss_pred cceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcce
Q 005551 18 WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 62 (691)
Q Consensus 18 ~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~Pf 62 (691)
.|.-++||.++.+++.+.| |--|+|..+ +|++.
T Consensus 24 ~~~~~~vd~~~~~~l~~~~--------~v~~~PT~~----~g~~~ 56 (75)
T PHA02125 24 EYTYVDVDTDEGVELTAKH--------HIRSLPTLV----NTSTL 56 (75)
T ss_pred hheEEeeeCCCCHHHHHHc--------CCceeCeEE----CCEEE
Confidence 3677999999999988888 778999866 67665
No 189
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=26.77 E-value=1.1e+02 Score=26.17 Aligned_cols=44 Identities=32% Similarity=0.468 Sum_probs=33.4
Q ss_pred HHHHHHh--ccceEEeecCCC-CCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcc
Q 005551 10 GVAKLLN--DWFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 61 (691)
Q Consensus 10 ~vA~~lN--~~Fv~iKVDree-rPdid~~ym~~~q~~~g~gGWPl~vfltPd~~P 61 (691)
++++.+. .+++-+++|.++ -|++-+.| |-.|.|..+|+.+.+++
T Consensus 42 ~~~~~~~~~~~~~~~~id~~~~~~~~~~~~--------~i~~~P~~~~~~~~~~~ 88 (105)
T cd02998 42 KLAAVFANEDDVVIAKVDADEANKDLAKKY--------GVSGFPTLKFFPKGSTE 88 (105)
T ss_pred HHHHHhCCCCCEEEEEEECCCcchhhHHhC--------CCCCcCEEEEEeCCCCC
Confidence 3455554 568999999999 78777666 66789999999887643
No 190
>PRK13271 treA trehalase; Provisional
Probab=26.74 E-value=94 Score=36.59 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCh----HHHHHHHHHHHHHHHhcccccCCccccCCC
Q 005551 472 SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTTG 514 (691)
Q Consensus 472 ~all~Ly~~Tgd~----~~L~~A~~L~~~~~~~F~D~~~Gg~f~~~~ 514 (691)
.-|.++++..|+. +|..+|.++.+.+.+.|||++.|.||+...
T Consensus 350 ~~LA~la~~lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl 396 (569)
T PRK13271 350 KILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKEGWYADYDL 396 (569)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEC
Confidence 3344566777765 689999999999999999998898887653
No 191
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=25.93 E-value=5.9e+02 Score=26.76 Aligned_cols=35 Identities=11% Similarity=-0.080 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc
Q 005551 224 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI 262 (691)
Q Consensus 224 LydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~ 262 (691)
.+-.|..+.+++++. .+.+...+.++++||.+.+.
T Consensus 140 ~~~TA~vl~aL~~~g----~~~~~~~i~~a~~yL~~~~~ 174 (292)
T cd02897 140 VALTAYVLIALLEAG----LPSERPVVEKALSCLEAALD 174 (292)
T ss_pred cchHHHHHHHHHhcC----CccccHHHHHHHHHHHHhcc
Confidence 345888888888754 33466788999999998664
No 192
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=25.42 E-value=95 Score=26.36 Aligned_cols=44 Identities=32% Similarity=0.447 Sum_probs=33.7
Q ss_pred HHHHHHhc--cceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcc
Q 005551 10 GVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 61 (691)
Q Consensus 10 ~vA~~lN~--~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~P 61 (691)
++|+.+.. .+.-++||-++-|++-+.| |--+.|..+|+.+++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 37 KLAKELKGDPDIVLAKVDATAEKDLASRF--------GVSGFPTIKFFPKGKKP 82 (102)
T ss_pred HHHHHhccCCceEEEEEEccchHHHHHhC--------CCCcCCEEEEecCCCcc
Confidence 46666765 6888999999987776666 56689988888887763
No 193
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=24.53 E-value=81 Score=28.65 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.3
Q ss_pred CCCCCCceEEeCCCCccee
Q 005551 45 GGGGWPLSVFLSPDLKPLM 63 (691)
Q Consensus 45 g~gGWPl~vfltPd~~Pf~ 63 (691)
|..|+|.++++.++|+..+
T Consensus 102 ~v~~~P~~~vid~~G~v~~ 120 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRH 120 (126)
T ss_pred CCCcCCeEEEECCCCcEEE
Confidence 6678999999999998765
No 194
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=24.34 E-value=1.1e+02 Score=26.57 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=31.8
Q ss_pred HHHHHHhccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeCCCCcc
Q 005551 10 GVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 61 (691)
Q Consensus 10 ~vA~~lN~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vfltPd~~P 61 (691)
++|+-++....-++||-++.|++-+.| |-.|.|..+|..+.+++
T Consensus 43 ~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~i~~~Pt~~~~~~g~~~ 86 (104)
T cd03004 43 KAARALKGKVKVGSVDCQKYESLCQQA--------NIRAYPTIRLYPGNASK 86 (104)
T ss_pred HHHHHhcCCcEEEEEECCchHHHHHHc--------CCCcccEEEEEcCCCCC
Confidence 355555555556799999988776655 77899988888666454
No 195
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=24.19 E-value=1.1e+02 Score=29.14 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=17.1
Q ss_pred CCCCCCceEEeCCCCccee
Q 005551 45 GGGGWPLSVFLSPDLKPLM 63 (691)
Q Consensus 45 g~gGWPl~vfltPd~~Pf~ 63 (691)
|-.++|.++++.++|+...
T Consensus 135 ~v~~~P~~~lid~~g~i~~ 153 (173)
T PRK03147 135 GVGPLPTTFLIDKDGKVVK 153 (173)
T ss_pred CCCCcCeEEEECCCCcEEE
Confidence 7789999999999999874
No 196
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=23.86 E-value=89 Score=36.38 Aligned_cols=20 Identities=10% Similarity=-0.094 Sum_probs=17.5
Q ss_pred CCCCCCceEEeCCCCcceee
Q 005551 45 GGGGWPLSVFLSPDLKPLMG 64 (691)
Q Consensus 45 g~gGWPl~vfltPd~~Pf~~ 64 (691)
|--|+|.++|+.|+|+....
T Consensus 136 gV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 136 NISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred CCCCcCeEEEEcCCCeEEEE
Confidence 66799999999999999753
No 197
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=23.67 E-value=76 Score=27.87 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005551 424 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 494 (691)
Q Consensus 424 ~~~l~~A~~~~~~l~~~~~d~~~g~l~~~~~~g~~~~~~~l~DyA~li~all~Ly~~Tgd~~~L~~A~~L~ 494 (691)
+.+.+..+++.+||.++... +|++-. . +. ......+.+ .+++.++...++...++++.+..
T Consensus 42 ~~~~~ai~ka~~~l~~~Q~~--dG~w~~--~-~~----~~~~~t~~~-~~~l~~~~~~~~~~~~~r~~~wi 102 (109)
T PF13243_consen 42 AAVDEAIKKAIDWLLSHQNP--DGGWGY--S-GG----EYVSMTAAA-IAALALAGVYPDDEAVERGLEWI 102 (109)
T ss_dssp S-SSBSSHHHHHHHHH---T--TS--S---T-S------HHHHHHHH-HHHHHHHHTT--HHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCC--CCCCCC--c-CC----CCHHHHHHH-HHHHHHhCCCCCCHHHHHHHHHH
Confidence 35667889999999998754 565531 1 10 011122333 33335556656556666655443
No 198
>COG0568 RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]
Probab=23.60 E-value=2.1e+02 Score=31.51 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=37.2
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 005551 305 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 371 (691)
Q Consensus 305 ~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~ 371 (691)
+..++...||+. .|. ..+++++++.+|++.|++.+...++.+||+
T Consensus 284 E~~Vi~~R~gl~-~~~---------------------~~TLeevg~~~~isrERvRQIE~kAl~KLr 328 (342)
T COG0568 284 ERRVIRLRFGLD-DGE---------------------PKTLEELGEEFGISRERVRQIEAKALRKLR 328 (342)
T ss_pred HHHHHHHHhccC-CCC---------------------cchHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 567888889987 221 135789999999999999999999999998
No 199
>PRK07406 RNA polymerase sigma factor RpoD; Validated
Probab=23.34 E-value=2.1e+02 Score=31.92 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=40.0
Q ss_pred HHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCccCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005551 298 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 372 (691)
Q Consensus 298 i~~~l~----~~~~~~~~~~~i~~~Gn~~~~~~~d~~~~~~g~nvL~~~~~~~~~a~~~g~~~~~~~~~l~~~~~~L~~ 372 (691)
|..+|. .+..++..+|++... . ..+..++|+.+|++.+.+.++...+++||+.
T Consensus 305 L~~aL~~L~~rEr~IL~lrygl~~~-~---------------------~~Tl~EIA~~lgiS~eRVRQie~rAL~KLR~ 361 (373)
T PRK07406 305 LEGVLATLSPRERDVLRLRYGLDDG-R---------------------MKTLEEIGQIFNVTRERIRQIEAKALRKLRH 361 (373)
T ss_pred HHHHHHcCCHHHHHHHHHHHhcCCC-C---------------------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 455554 256688888887421 1 1246899999999999999999999999986
No 200
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=23.08 E-value=1.3e+02 Score=26.23 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=29.1
Q ss_pred HHHHHHhccceEEeecCCC--CCCHHHHHHHHHHHhcCCCCCCceEEeCCCC
Q 005551 10 GVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 59 (691)
Q Consensus 10 ~vA~~lN~~Fv~iKVDree--rPdid~~ym~~~q~~~g~gGWPl~vfltPd~ 59 (691)
++|+.++..+.-++||-++ .+++-+.| |-.|.|..+|+.+.+
T Consensus 42 ~~a~~~~~~~~~~~v~~~~~~~~~~~~~~--------~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 42 KAAKELDGLVQVAAVDCDEDKNKPLCGKY--------GVQGFPTLKVFRPPK 85 (109)
T ss_pred HHHHHhcCCceEEEEecCccccHHHHHHc--------CCCcCCEEEEEeCCC
Confidence 4677777644444555554 77766655 677999999998876
No 201
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=23.05 E-value=1.7e+02 Score=30.90 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=38.3
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHH
Q 005551 344 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 403 (691)
Q Consensus 344 ~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~ 403 (691)
+.+++|+.+|+++..++..+..+|++|.+.+.. ..+ +. .=|.-++.++..|..
T Consensus 133 s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~~~~-~~~--~~----~~~~~~v~~f~~A~~ 185 (293)
T PRK09636 133 PFDEIASTLGRSPAACRQLASRARKHVRAARPR-FPV--SD----EEGAELVEAFFAALA 185 (293)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCC-CCC--Cc----hHHHHHHHHHHHHHH
Confidence 467999999999999999999999999986542 111 11 124556677777664
No 202
>PLN02710 farnesyltranstransferase subunit beta
Probab=22.95 E-value=7.6e+02 Score=28.23 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcccccCCCCCCCCCCCC--hhHHHHHHHhHhhhcccCCCCCcHHHHHHH--HHHHHHHHhCCCcc
Q 005551 125 LPQNALRLCAEQLSKSYDSRFGGFGSAPKFPR--PVEIQMMLYHSKKLEDTGKSGEASEGQKMV--LFTLQCMAKGGIHD 200 (691)
Q Consensus 125 ~~~~~~~~~~~~l~~~~D~~~GGfg~apKFP~--~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~--~~TL~~m~~GGi~D 200 (691)
++....+.+++.+.+-.++. ||||+.|--+. .+++..++-.... +++++...+ ...++-+.+ +.+
T Consensus 89 l~~~~~~~ii~~l~~cQ~~d-GGFgg~pg~~~hl~~TY~Av~~L~iL--------g~~~~l~~Idr~~l~~fl~s--~q~ 157 (439)
T PLN02710 89 LDDELENDTIDFLSRCQDPN-GGYGGGPGQLPHLATTYAAVNTLVTI--------GGERALSSINREKLYTFLLR--MKD 157 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCC-cCCCCCCCCCccHHHHHHHHHHHHHc--------CCchhhcccCHHHHHHHHHH--cCC
Q ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 005551 201 HVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 268 (691)
Q Consensus 201 ~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggf 268 (691)
. .|||.- ..|.-+|. ...|-=..++.++ +..-.....++++||.+ .+..+|||
T Consensus 158 ~-dGgF~~----~~~gE~D~-R~tYcAlail~LL--------~~l~~~~~e~~~~~I~s-cQ~~dGGF 210 (439)
T PLN02710 158 P-SGGFRM----HDGGEMDV-RACYTAISVASLL--------NILDDELVKGVGDYILS-CQTYEGGI 210 (439)
T ss_pred C-CCCccc----CCCCCCCc-CCcHHHHHHHHHh--------CcCchhhHHHHHHHHHH-hCCCCCCC
No 203
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=21.92 E-value=2.2e+02 Score=30.79 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=38.2
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhc--CCCCCCCcchhhchHHHHHHHHHHHH
Q 005551 344 DSSASASKLGMPLEKYLNILGECRRKLFDVRSK--RPRPHLDDKVIVSWNGLVISSFARAS 402 (691)
Q Consensus 344 ~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~--R~~P~~Ddkilt~WNal~i~aLa~a~ 402 (691)
+..++|+.+|+++..++.+|..+|++|.+.|.+ +..|..|.. =|--++.++..|.
T Consensus 171 s~~EIA~~lgis~~tVk~~l~RAr~~Lr~~~~~~~~~~~~~~~~----~~~~~v~~~~~A~ 227 (339)
T PRK08241 171 SAAEVAELLDTSVAAVNSALQRARATLAERGPSAADTLREPDDP----EERALLARYVAAF 227 (339)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHhhcCCCcccccCCCCCh----HHHHHHHHHHHHH
Confidence 567999999999999999999999999884321 112444444 2344555555554
No 204
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=21.49 E-value=1.5e+02 Score=25.94 Aligned_cols=44 Identities=11% Similarity=0.004 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeee
Q 005551 222 KMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 271 (691)
Q Consensus 222 KmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~m~~~~Ggfysa 271 (691)
-.+++.++.+.++..+..... .+.+. .++||.+ +++|+|||.+.
T Consensus 21 ~~~~~T~~al~aL~~~g~~~~----~~~~~-~~~~L~~-~q~~dGg~~~~ 64 (113)
T PF13249_consen 21 SDVWDTAFALLALAALGEEPD----RDRAA-AVEWLLS-QQNPDGGWGSN 64 (113)
T ss_dssp BEHHHHHHHHHHHHHHTSHHC----HHHHH-HHHHHHH-HB-TTSGBBSS
T ss_pred CCHHHHHHHHHHHHHhCCccc----HHHHH-HHHHHHH-hCCCCCCccCC
Confidence 378899999998887655552 22222 5999998 55789999774
No 205
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=21.39 E-value=1.8e+02 Score=31.11 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=37.3
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhchHHHHHHHHHHHHH
Q 005551 344 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASK 403 (691)
Q Consensus 344 ~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~R~~R~~P~~Ddkilt~WNal~i~aLa~a~~ 403 (691)
+..++|+.+|+++..+...+..+|++|.+.+. |..+.-+ =..-++.++..|..
T Consensus 136 s~~EIA~~Lgis~~tVr~~l~RAr~~Lr~~~~-~~~~~~~------~~~~~~~~f~~a~~ 188 (290)
T PRK09635 136 PYQQIATTIGSQASTCRQLAHRARRKINESRI-AASVEPA------QHRVVTRAFIEACS 188 (290)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHhhCC-CCCCChH------HHHHHHHHHHHHHH
Confidence 46789999999999999999999999987543 1112111 12456666666654
No 206
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=21.24 E-value=1.5e+02 Score=25.86 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHHh---ccceEEeecCCCCCCHHHHHHHHHHHhcCCCCCCceEEeC
Q 005551 10 GVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 56 (691)
Q Consensus 10 ~vA~~lN---~~Fv~iKVDreerPdid~~ym~~~q~~~g~gGWPl~vflt 56 (691)
++++.++ .++.-.+||-++.|++-+.| |--|-|..+|+.
T Consensus 39 ~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~I~~~Pt~~l~~ 80 (104)
T cd03000 39 EVGAELKSSGSPVRVGKLDATAYSSIASEF--------GVRGYPTIKLLK 80 (104)
T ss_pred HHHHHHHhcCCcEEEEEEECccCHhHHhhc--------CCccccEEEEEc
Confidence 3455553 23666789999988876666 666899999983
No 207
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=21.11 E-value=1.4e+02 Score=26.56 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=29.7
Q ss_pred ceEEeecCCCCCCHHHHHHHHHHHhcC--CCCCCceEEeCCC
Q 005551 19 FVSIKVDREERPDVDKVYMTYVQALYG--GGGWPLSVFLSPD 58 (691)
Q Consensus 19 Fv~iKVDreerPdid~~ym~~~q~~~g--~gGWPl~vfltPd 58 (691)
-.-|=||-++ .|...++..+.++... .+|||+.+...-+
T Consensus 50 ~~li~vd~~~-~~~~~~~~~i~~~~~~~~~~~~~vd~~~~~~ 90 (108)
T PF14581_consen 50 SLLIGVDFDG-EDIEEIFQEIGRAARPYLPDGWPVDFVLLDD 90 (108)
T ss_pred eEEEEEeccC-hhHHHHHHHHHHHhhhcCCCCceEEEEEccC
Confidence 3445666666 8899998888888776 5679999887666
No 208
>PRK05803 sporulation sigma factor SigK; Reviewed
Probab=20.54 E-value=3e+02 Score=28.04 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=26.6
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 005551 344 DSSASASKLGMPLEKYLNILGECRRKLFDV 373 (691)
Q Consensus 344 ~~~~~a~~~g~~~~~~~~~l~~~~~~L~~~ 373 (691)
+.+++|+.+|++...+...+..++++|+..
T Consensus 197 S~~EIA~~lgis~~tV~~~~~rA~~kLr~~ 226 (233)
T PRK05803 197 TQREIAKALGISRSYVSRIEKRALKKLFKE 226 (233)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999998763
No 209
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=20.27 E-value=3.9e+02 Score=27.59 Aligned_cols=77 Identities=9% Similarity=0.077 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 005551 181 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 260 (691)
Q Consensus 181 ~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHfEKmLydnA~ll~~ya~Ay~~tg~~~y~~~A~~~~~~l~~~ 260 (691)
++.+.+...+..+.. +-.-+|||--|.... +--.+..|..+.++.+|-+.. +.-..+..++++||.+.
T Consensus 46 ~~~~~i~~~~~~l~~---~Q~~dGgf~~w~~~~-------~~~~~~Ta~~~~~L~~a~~~~--~v~~~~i~ra~~~L~~~ 113 (282)
T cd02891 46 KALEYIRKGYQRLLT---YQRSDGSFSAWGNSD-------SGSTWLTAYVVKFLSQARKYI--DVDENVLARALGWLVPQ 113 (282)
T ss_pred HHHHHHHHHHHHHHh---hcCCCCCccccCCCC-------CCchHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhc
Confidence 556666666666654 223578885332221 335678999999999987765 23357789999999986
Q ss_pred ccCCCCceee
Q 005551 261 MIGPGGEIFS 270 (691)
Q Consensus 261 m~~~~Ggfys 270 (691)
..++|+|..
T Consensus 114 -q~~~g~~~~ 122 (282)
T cd02891 114 -QKEDGSFRE 122 (282)
T ss_pred -cCCCCCcCC
Confidence 466787754
No 210
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=20.02 E-value=1.3e+02 Score=27.20 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=26.3
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 005551 344 DSSASASKLGMPLEKYLNILGECRRKLFD 372 (691)
Q Consensus 344 ~~~~~a~~~g~~~~~~~~~l~~~~~~L~~ 372 (691)
+..++|+.+|+++..+...+..++++|.+
T Consensus 128 s~~eIA~~l~~s~~~v~~~~~~~~~kl~~ 156 (158)
T TIGR02937 128 SYKEIAEILGISVGTVKRRLKRARKKLRE 156 (158)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999875
Done!