BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005552
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 269 bits (688), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 165/400 (41%), Positives = 214/400 (53%), Gaps = 54/400 (13%)
Query: 274 KGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVN 333
K + +++G GNT N +HP V Q ++D LRYWVTEMHVDGFRFDLA+ + R + +N
Sbjct: 320 KRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFDLAAALARELYSVNMLN 379
Query: 334 VYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIW 392
+ I ++ DPIL VKLIAE WD G G YQVG FP+ W
Sbjct: 380 TFFIALQ--------------------QDPILSQVKLIAEPWDVGQGGYQVGNFPYQ--W 417
Query: 393 SEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLAD 452
+EWNGKYRD +R+F +G A L GSP++Y G + P+ SIN+V +HDGF+L D
Sbjct: 418 AEWNGKYRDSIRRFWRGEALPYSEIANRLLGSPDIYLGNNKTPFASINYVTSHDGFTLED 477
Query: 453 LVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGV 512
LVSYNQKHN ANG +N DG N SWNCG EG + V R +Q RNF + L+VSQG
Sbjct: 478 LVSYNQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVICREKQKRNFMITLLVSQGT 537
Query: 513 PMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTK-------FRH 565
PMI GDE T+ GNNN +C DN+I +F W+ +E KS F F + + FR
Sbjct: 538 PMILGGDELSRTQRGNNNAFCQDNEITWFDWN-LDERKSKFLEFVKKMIQFYRAHPAFRR 596
Query: 566 ECESLG--LSDFPTADRLQW--HGHAPGLPDWSDKSRFVAFTLIDSVKGEI--------- 612
E G L P D + G WS ++ V F L SV EI
Sbjct: 597 ERYFQGKKLFGMPLKDVTFYTLEGREVDEKTWSSPTQLVIFVLEGSVMDEINMYGERIAD 656
Query: 613 ---YVAFNASHLPVIISLPKRPGYRWEPLVDTS----KPE 645
+ NA+ V + PK +WE ++ + KPE
Sbjct: 657 DSFLIILNANPNNVKVKFPKG---KWELVISSYLREIKPE 693
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 106/207 (51%), Gaps = 34/207 (16%)
Query: 93 GYPTPFGATL--RDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDV 150
G P P G+ D GVNFS+FS NA L L +L++ + K E+ NKTGD+
Sbjct: 15 GDPYPLGSNWIEDDDGVNFSLFSENAEKVELLLYSLTNQKYPKEIIEVK-----NKTGDI 69
Query: 151 WHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKA-----VISRAQFGVLGP 205
WHVF+ G LY Y+ G + P+ G F+P K+++DPYAKA + + A FG
Sbjct: 70 WHVFVPGLRPGQLYAYRVYGPYKPELGLRFNPNKVLIDPYAKAINGSVIWNDAVFGYKIG 129
Query: 206 DEN------------CWPQMACLVPTPEDEFDWEGDLPL---KYPQRDLIIYEVHVRGFT 250
D+N P+ + P F+W+ + + K P +D +IYEVHV+GFT
Sbjct: 130 DQNQDLTYDERDSGEYVPKSVVINPY----FEWDDEDFIKGKKVPLKDTVIYEVHVKGFT 185
Query: 251 RHESSKTEH-PGTYLGVV--EKLDHLK 274
+ E+ GTY G+ + + +LK
Sbjct: 186 KLRLDLPENIRGTYEGLASEQMISYLK 212
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 163/297 (54%), Gaps = 27/297 (9%)
Query: 275 GEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNV 334
G+++N++GCGNT N +HP V + CLRYWV HVDGFRFDLA++M R
Sbjct: 294 GDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEF------ 347
Query: 335 YGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWS 393
+ PL I N P+L VKLIAE WD G YQVG FP +++
Sbjct: 348 ---------------RQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFP--PLFA 390
Query: 394 EWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADL 453
EWN +RD R+F D GAFA S ++++ GR P +IN V AHDGF+L D
Sbjct: 391 EWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDC 450
Query: 454 VSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVP 513
V +N KHN ANGE+N DG +N S N G+EG ++ + + RR + L++SQG P
Sbjct: 451 VCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTP 510
Query: 514 MISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESL 570
M+ GDE+GH++ GNNN YC DN + + W ++ S F L R +L
Sbjct: 511 MLLAGDEHGHSQHGNNNAYCQDNQLTWLDW---SQASSGLTAFTAALIHLRKRIPAL 564
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 17/195 (8%)
Query: 89 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTG 148
Q++ G P P GA GVNF++FS++A LC+ ++ QE++ +G
Sbjct: 3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFD-ANGQEHRY-------DLPGHSG 54
Query: 149 DVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVL---GP 205
D+WH +L + YGY+ G + P EGH F+P K+++DP A+ + + L G
Sbjct: 55 DIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDGEFKDNPLLHAGH 114
Query: 206 DENCWPQMACLVP---TPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTR-HESSKTEHPG 261
+E + A + P D +DWE D P + P IIYE HV+G T H E G
Sbjct: 115 NEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKGLTYLHPEIPVEIRG 174
Query: 262 TY--LGVVEKLDHLK 274
TY LG +++LK
Sbjct: 175 TYKALGHPVMINYLK 189
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 186/385 (48%), Gaps = 28/385 (7%)
Query: 277 FYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYG 336
FY+ +G G FN + V + IVD L YW M VDGFRFDLAS++ G+S +
Sbjct: 335 FYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVL--GNSCLNGAYTAS 392
Query: 337 IPIEGDLLTTGTPLRSPPLIDLISNDPILR------GVKLIAEAWDTGG-LYQVGIFPHW 389
P + S I+ I + +R G+ L AE W GG YQ+G FP
Sbjct: 393 APNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFPQ- 451
Query: 390 GIWSEWNGKYRDIVRQF---IKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHD 446
WSEWNG +RD +RQ + + A GS NL+Q GR PWNSINF+ HD
Sbjct: 452 -GWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHD 510
Query: 447 GFSLADLVSYNQKHN-LANGEDNNDGETHNN-SWNCGQEGEFANILVKKLRRRQMRNFFL 504
G +L D+ S N +N A +DG T N SW+ +G A +RR R
Sbjct: 511 GMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWD---QGMSAGTGAAVDQRRAARTGMA 567
Query: 505 CLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFR 564
M+S G P++ GDEY T NNN Y D+ N+ + + +S+F+ F L FR
Sbjct: 568 FEMLSAGTPLMQGGDEYLRTLQCNNNAYNLDSSANWLTYSWTTD-QSNFYTFAQRLIAFR 626
Query: 565 HECESLGLSDFPTADRLQWHGHAPGLPD---WSDKSRF-VAFTLIDSVKGE---IYVAFN 617
+L S + + +L W+ + + D W++ S + +A+ + G+ IYVA+N
Sbjct: 627 KAHPALRPSSWYSGSQLTWYQPSGAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYN 686
Query: 618 ASHLPVIISLPKRP-GYRWEPLVDT 641
V +LP P G +W + DT
Sbjct: 687 GWSSSVTFTLPAPPSGTQWYRVTDT 711
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 24/116 (20%)
Query: 176 EGHYFDPTKIVLDPYAKAV---------------ISRAQFGVLGPDENCW-PQMACLVPT 219
G F+P K++LDPYA+ V S A + D + P+ LVP+
Sbjct: 107 NGDRFNPNKLLLDPYAQEVSQDPLNPSNQNGNVFASGASYRTT--DSGIYAPKGVVLVPS 164
Query: 220 PEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESS-KTEHPGTYLGVVEKLDHLK 274
+ G P + Q+D +IYEVHVRGFT ++S ++ GTY G K +L
Sbjct: 165 TQST----GTKPTR-AQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLA 215
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 142/314 (45%), Gaps = 60/314 (19%)
Query: 275 GEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASI-----MTRGSSLW 329
G + N SG GN F HP+ ++F++D + YWV E HVDGFRFDL ++ M + S+
Sbjct: 580 GNYTNGSGXGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFDLMALLGKDTMAKISNEL 639
Query: 330 DSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHW 389
++N GI + G+ T GT L S+ + +G + GL +G+F
Sbjct: 640 HAINP-GIVLYGEPWTGGTS-------GLSSDQLVTKGQQ--------KGL-GIGVFND- 681
Query: 390 GIWSEWNGKYRDIVRQ-FIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGF 448
I + +G D Q F G + GS Q P +IN+V +HD
Sbjct: 682 NIRNGLDGNVFDKTAQGFATGDPNQVDVIKNGVIGS---IQDFTSAPSETINYVTSHDNM 738
Query: 449 SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMV 508
+L D + LA+ + + + +++ ++ + +
Sbjct: 739 TLWDKI-------LASNPSDTEAD--------------------RIKMDELAH--AVVFT 769
Query: 509 SQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECE 568
SQGVP + G+E TKGGN+N+Y + +N F W +K + K D F + + R++
Sbjct: 770 SQGVPFMQGGEEMLRTKGGNDNSYNAGDSVNQFDWSRKAQFK-DVFDYFSSMIHLRNQHP 828
Query: 569 SLGLSDFPTADRLQ 582
+ ++ TAD+++
Sbjct: 829 AFRMT---TADQIK 839
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 38/178 (21%)
Query: 110 SIFSSNAVSATLCLITLSDLQ-------ENKVTEEIALDSFANKTGDVWHVFLKGDFKDM 162
+++S +A S + T S++Q + +T+++ + N T W + + G+ ++
Sbjct: 320 NVYSKDATSFRVWAPTASNVQLLLYNSEKGSITKQLEMQKSDNGT---WKLQVSGNLENW 376
Query: 163 LYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPED 222
Y Y+ + T+ +DPYA+A+ A G++ L T D
Sbjct: 377 YYLYQVTVNGT---------TQTAVDPYARAISVNATRGMI----------VDLKAT--D 415
Query: 223 EFDWEGDLPLKYPQR--DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEK----LDHLK 274
W+GD + P D +IYE HVR F+ +S ++ G YL E DH+K
Sbjct: 416 PAGWQGDHE-QTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVK 472
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 147/370 (39%), Gaps = 64/370 (17%)
Query: 275 GEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNV 334
G+ N +G GN + R+FI DC+ YW+ E +VDGFRFDL I+ + L+
Sbjct: 364 GKPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLLGILDIDTVLYMKEKA 423
Query: 335 Y----GIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAW------DTGGLYQVG 384
GI + G+ TPL L +N P + G+ + + +T L G
Sbjct: 424 TKAKPGILLFGEGWDLATPLPHEQKAAL-ANAPRMPGIGFFNDMFRDAVKGNTFHLKATG 482
Query: 385 IFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCA 444
++ NG+ V I G+ G+ A A + +P SIN+V +
Sbjct: 483 -------FALGNGESAQAVMHGIAGSSGWK-ALAPIVP-----------EPSQSINYVES 523
Query: 445 HDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFL 504
HD + D +S+ A ++N+ +R + R
Sbjct: 524 HDNHTFWDKMSF------ALPQEND-----------------------SRKRSRQRLAVA 554
Query: 505 CLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFR 564
++++QGVP I G E+ TK G N+Y + IN WD++E K D + L R
Sbjct: 555 IILLAQGVPFIHSGQEFFRTKQGVENSYQSSDSINQLDWDRRETFKED-VHYIRRLISLR 613
Query: 565 HECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVI 624
+ L +A +Q H L + R +D K +I V +AS V
Sbjct: 614 KAHPAFRLR---SAADIQRHLECLTLKEHLIAYRLYDLDEVDEWK-DIIVIHHASPDSVE 669
Query: 625 ISLPKRPGYR 634
LP YR
Sbjct: 670 WRLPNDIPYR 679
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 17/83 (20%)
Query: 187 LDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDL-PLKYPQRDLIIYEVH 245
+D YAKAV + GV+ L P D+ W L P +P D +IYE H
Sbjct: 178 VDQYAKAVTVNGEKGVV------------LRP---DQMKWTAPLKPFSHPV-DAVIYETH 221
Query: 246 VRGFTRHESSKTEHPGTYLGVVE 268
+R F+ HE+S + G YL + E
Sbjct: 222 LRDFSIHENSGMINKGKYLALTE 244
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/309 (21%), Positives = 116/309 (37%), Gaps = 63/309 (20%)
Query: 240 IIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKGEFYNY---------SGCGNTFNCN 290
+I E+H RG H V+ + L+ +Y++ S G
Sbjct: 260 LINEIHKRGMGAILDVVYNHTAK----VDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTT 315
Query: 291 HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPL 350
H + ++ ++D ++Y V VDGFRFD+ + ++ + + +L+ G
Sbjct: 316 HHMTKRLLIDSIKYLVDTYKVDGFRFDM--MGDHDAASIEEAYKAARALNPNLIMLGEGW 373
Query: 351 RSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGI-------FPHWGIWSEWNGKYRDIV 403
R+ + N P + + DT ++ I +P+ G + G RD+
Sbjct: 374 RTYAGDE---NMPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVN 430
Query: 404 RQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLA 463
F + L P ++ P + I ++ AHD +L D+++ + K + +
Sbjct: 431 TIF------------KNLIAQPTNFEADS--PGDVIQYIAAHDNLTLFDIIAQSIKKDPS 476
Query: 464 NGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGH 523
E N E H R++R L ++ +QG P I G EYG
Sbjct: 477 KAE--NYAEIH----------------------RRLRLGNLMVLTAQGTPFIHSGQEYGR 512
Query: 524 TKGGNNNTY 532
TK N Y
Sbjct: 513 TKQFRNPAY 521
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 20/216 (9%)
Query: 94 YPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVW 151
Y GA L++ G V+ +++S +A ++ + +D +KV +AL+ T W
Sbjct: 11 YDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKND--PDKVVGTVALEKGERGT---W 65
Query: 152 HVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWP 211
L D + L F G + + T + LDPYAK++ + D +
Sbjct: 66 KQTL--DSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVA 123
Query: 212 QMACLVPTPEDEFDWE-GDLPLKYPQRDLIIYEVHVRGFTRHES---SKTEHPGTYLGVV 267
+ A + P D G + + D +IYE HVR FT + T+ GT+ +
Sbjct: 124 KAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFI 183
Query: 268 EKLDHLKGEFYNYSGCGNTFNCNHPVVRQFIVDCLR 303
EKLD+LK G T PV+ + V+ L+
Sbjct: 184 EKLDYLK-------DLGVTHIQLLPVLSYYFVNELK 212
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/309 (21%), Positives = 116/309 (37%), Gaps = 63/309 (20%)
Query: 240 IIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKGEFYNY---------SGCGNTFNCN 290
+I E+H RG H V+ + L+ +Y++ S G
Sbjct: 261 LINEIHKRGMGAILDVVYNHTAK----VDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTT 316
Query: 291 HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPL 350
H + ++ ++D ++Y V VDGFRFD+ + ++ + + +L+ G
Sbjct: 317 HHMTKRLLIDSIKYLVDTYKVDGFRFDM--MGDHDAASIEEAYKAARALNPNLIMLGEGW 374
Query: 351 RSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGI-------FPHWGIWSEWNGKYRDIV 403
R+ + N P + + DT ++ I +P+ G + G RD+
Sbjct: 375 RTYAGDE---NMPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVN 431
Query: 404 RQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLA 463
F + L P ++ P + I ++ AHD +L D+++ + K + +
Sbjct: 432 TIF------------KNLIAQPTNFEADS--PGDVIQYIAAHDDLTLFDIIAQSIKKDPS 477
Query: 464 NGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGH 523
E N E H R++R L ++ +QG P I G EYG
Sbjct: 478 KAE--NYAEIH----------------------RRLRLGNLMVLTAQGTPFIHSGQEYGR 513
Query: 524 TKGGNNNTY 532
TK N Y
Sbjct: 514 TKQFRNPAY 522
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 20/216 (9%)
Query: 94 YPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVW 151
Y GA L++ G V+ +++S +A ++ + +D +KV +AL+ T W
Sbjct: 12 YDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKND--PDKVVGTVALEKGERGT---W 66
Query: 152 HVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWP 211
L D + L F G + + T + LDPYAK++ + D +
Sbjct: 67 KQTL--DSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVA 124
Query: 212 QMACLVPTPEDEFDWE-GDLPLKYPQRDLIIYEVHVRGFTRHES---SKTEHPGTYLGVV 267
+ A + P D G + + D +IYE HVR FT + T+ GT+ +
Sbjct: 125 KAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFI 184
Query: 268 EKLDHLKGEFYNYSGCGNTFNCNHPVVRQFIVDCLR 303
EKLD+LK G T PV+ + V+ L+
Sbjct: 185 EKLDYLK-------DLGVTHIQLLPVLSYYFVNELK 213
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/309 (21%), Positives = 116/309 (37%), Gaps = 63/309 (20%)
Query: 240 IIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKGEFYNY---------SGCGNTFNCN 290
+I E+H RG H V+ + L+ +Y++ S G
Sbjct: 567 LINEIHKRGMGAILDVVYNHTAK----VDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTT 622
Query: 291 HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPL 350
H + ++ ++D ++Y V VDGFRFD+ + ++ + + +L+ G
Sbjct: 623 HHMTKRLLIDSIKYLVDTYKVDGFRFDM--MGDHDAASIEEAYKAARALNPNLIMLGEGW 680
Query: 351 RSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGI-------FPHWGIWSEWNGKYRDIV 403
R+ + N P + + DT ++ I +P+ G + G RD+
Sbjct: 681 RTYAGDE---NMPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVN 737
Query: 404 RQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLA 463
F + L P ++ P + I ++ AHD +L D+++ + K + +
Sbjct: 738 TIF------------KNLIAQPTNFEADS--PGDVIQYIAAHDNLTLFDIIAQSIKKDPS 783
Query: 464 NGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGH 523
E N E H R++R L ++ +QG P I G EYG
Sbjct: 784 KAE--NYAEIH----------------------RRLRLGNLMVLTAQGTPFIHSGQEYGR 819
Query: 524 TKGGNNNTY 532
TK N Y
Sbjct: 820 TKQFRNPAY 828
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 24/218 (11%)
Query: 94 YPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVW 151
Y GA L++ G V+ +++S +A ++ + +D +KV +AL+ T W
Sbjct: 318 YDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKND--PDKVVGTVALEKGERGT---W 372
Query: 152 HVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWP 211
L D + L F G + + T + LDPYAK++ + D +
Sbjct: 373 KQTL--DSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVA 430
Query: 212 QMACLVPT---PEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHES---SKTEHPGTYLG 265
+ A + P P+D G + + D +IYE HVR FT + T+ GT+
Sbjct: 431 KAAFVDPAKLGPQDLT--YGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEA 488
Query: 266 VVEKLDHLKGEFYNYSGCGNTFNCNHPVVRQFIVDCLR 303
+EKLD+LK G T PV+ + V+ L+
Sbjct: 489 FIEKLDYLK-------DLGVTHIQLLPVLSYYFVNELK 519
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 92/436 (21%), Positives = 147/436 (33%), Gaps = 117/436 (26%)
Query: 240 IIYEVHVRGFTRHESSKTEHPG-TYLGVVEKLDHLKGEFYNYSGC------GNTFNCNHP 292
+I+++H RG H TYL E ++ F N G G H
Sbjct: 375 LIHDIHKRGMGVILDVVYNHTAKTYL--FEDIEPNYYHFMNEDGSPRESFGGGRLGTTHA 432
Query: 293 VVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRS 352
+ R+ +VD ++Y +E VDGFRFD+ D+ + +L +
Sbjct: 433 MSRRVLVDSIKYLTSEFKVDGFRFDMMGD-------HDAAAI-------ELAYKEAKAIN 478
Query: 353 PPLIDLISNDPILRGVKLIAEAWDT-GGLYQVGIFP---HWGIWSEWNGKYRDIVRQFIK 408
P +I +I E W T G + P W ++ G + D +R +K
Sbjct: 479 PNMI-------------MIGEGWRTFQGDQGKPVKPADQDWMKSTDTVGVFSDDIRNSLK 525
Query: 409 ------GTDGFAGAFAECLCG-------SPNLYQGGGRKPWNSINFVCAHDGFSLADLVS 455
GT F + L G P ++ P + + ++ AHD +L D+++
Sbjct: 526 SGFPNEGTPAFITGGPQSLQGIFKNIKAQPGNFEADS--PGDVVQYIAAHDNLTLHDVIA 583
Query: 456 YNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMI 515
++ N +E R++R + ++ SQG I
Sbjct: 584 ----------------KSINKDPKVAEED----------IHRRLRLGNVMILTSQGTAFI 617
Query: 516 SMGDEYGHTKGGNNNTY-------------------------CHD-----NDINYFRW-- 543
G EYG TK N Y HD + IN+F W
Sbjct: 618 HSGQEYGRTKRLLNPDYMTKVSDDKLPNKATLIEAVKEYPYFIHDSYDSSDAINHFDWAA 677
Query: 544 ---DKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFV 600
+ K + + L R ++ DR G D +K +
Sbjct: 678 ATDNNKHPISTKTQAYTAGLITLRRSTDAFRKLSKAEIDREVSLITEVGQGDIKEKDLVI 737
Query: 601 AFTLIDSVKGEIYVAF 616
A+ IDS KG+IY F
Sbjct: 738 AYQTIDS-KGDIYAVF 752
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 39/199 (19%)
Query: 93 GYPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDV 150
Y GA L G V S++S +A S T+ + + +N+V +A V
Sbjct: 130 AYSGNLGAVLNQDGSKVEASLWSPSADSVTMIIYDKDN--QNRV---VATTPLVKNNKGV 184
Query: 151 WHVFLKGDFKDMLYGYK-FDGKFSPQEGHYFDPTKIVLDPYAKAV-----------ISRA 198
W L D G K + G + E +LDPYAK++ I A
Sbjct: 185 WQTIL-----DTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKSLAEWDSNTVNDDIKTA 239
Query: 199 QFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHES---S 255
+ + P + PQ +++G ++D +IYE HVR FT +S
Sbjct: 240 KAAFVNPSQ-LGPQNLSFAKIA----NFKG-------RQDAVIYEAHVRDFTSDQSLDGK 287
Query: 256 KTEHPGTYLGVVEKLDHLK 274
GT+ EKLD+L+
Sbjct: 288 LKNQLGTFAAFSEKLDYLQ 306
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 92/264 (34%), Gaps = 74/264 (28%)
Query: 284 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDL 343
GN + VR++I++ YW+TE H+DG RFD + S+ V + I D+
Sbjct: 252 GNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQIEDSSARHVLVEI-AQRIREDI 310
Query: 344 LTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIV 403
L + ++IS P Q G P + +EWN + + V
Sbjct: 311 TDRPIHLTTEDSRNIISLHP----------------RDQDGNAPLFT--AEWNDDFHNAV 352
Query: 404 RQFIKG-TDGFAGAFAEC---------------------LCGSPNLYQGGGRKPWNSINF 441
F G T + FA+ G P + G+ P ++F
Sbjct: 353 HVFATGETQAYYNDFADAPEKHLARALAEGFAYQGEISPQTGEPRGVKSTGQPPVAFVDF 412
Query: 442 VCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRN 501
+ HD Q N A G+ L+ + +
Sbjct: 413 IQNHD-----------QVGNRAQGDR----------------------LITLAGAERTKV 439
Query: 502 FFLCLMVSQGVPMISMGDEYGHTK 525
L++S +P++ MG+EYG ++
Sbjct: 440 LLATLLLSPHIPLLFMGEEYGESR 463
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 103/301 (34%), Gaps = 73/301 (24%)
Query: 268 EKLDHLKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASI 321
++L+ G + + C ++ H + + I D L W T+ +DGFRFDL A I
Sbjct: 466 QRLNETTGSVESATCCSDS-APEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQI 524
Query: 322 MT---RGSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPIL 365
++ R +L WDS + + I + +L TG S L D + P
Sbjct: 525 LSAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFD 584
Query: 366 RGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC-- 422
G L G G+ P+ E D R T G AG A+ +
Sbjct: 585 SGDALRQNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLID 636
Query: 423 -------GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDG 471
GS Y G P +N+V HD +L D++SY
Sbjct: 637 KDGAVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY--------------- 681
Query: 472 ETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNT 531
QE + R R +M+ QG+ G E +K ++
Sbjct: 682 -------KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDS 728
Query: 532 Y 532
Y
Sbjct: 729 Y 729
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 103/301 (34%), Gaps = 73/301 (24%)
Query: 268 EKLDHLKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASI 321
++L+ G + + C ++ H + + I D L W T+ +DGFRFDL A I
Sbjct: 629 QRLNETTGSVESATCCSDSA-PEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQI 687
Query: 322 MT---RGSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPIL 365
++ R +L WDS + + I + +L TG S L D + P
Sbjct: 688 LSAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFD 747
Query: 366 RGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC-- 422
G L G G+ P+ E D R T G AG A+ +
Sbjct: 748 SGDALRQNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLID 799
Query: 423 -------GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDG 471
GS Y G P +N+V HD +L D++SY
Sbjct: 800 KDGAVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY--------------- 844
Query: 472 ETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNT 531
QE + R R +M+ QG+ G E +K ++
Sbjct: 845 -------KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDS 891
Query: 532 Y 532
Y
Sbjct: 892 Y 892
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 103/301 (34%), Gaps = 73/301 (24%)
Query: 268 EKLDHLKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASI 321
++L+ G + + C ++ H + + I D L W T+ +DGFRFDL A I
Sbjct: 468 QRLNETTGSVESATCCSDS-APEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQI 526
Query: 322 MT---RGSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPIL 365
++ R +L WDS + + I + +L TG S L D + P
Sbjct: 527 LSAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFD 586
Query: 366 RGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC-- 422
G L G G+ P+ E D R T G AG A+ +
Sbjct: 587 SGDALRQNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLID 638
Query: 423 -------GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDG 471
GS Y G P +N+V HD +L D++SY
Sbjct: 639 KDGAVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY--------------- 683
Query: 472 ETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNT 531
QE + R R +M+ QG+ G E +K ++
Sbjct: 684 -------KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDS 730
Query: 532 Y 532
Y
Sbjct: 731 Y 731
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 103/301 (34%), Gaps = 73/301 (24%)
Query: 268 EKLDHLKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASI 321
++L+ G + + C ++ H + + I D L W T+ +DGFRFDL A I
Sbjct: 472 QRLNETTGSVESATCCSDS-APEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQI 530
Query: 322 MT---RGSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPIL 365
++ R +L WDS + + I + +L TG S L D + P
Sbjct: 531 LSAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFD 590
Query: 366 RGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC-- 422
G L G G+ P+ E D R T G AG A+ +
Sbjct: 591 SGDALRQNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLID 642
Query: 423 -------GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDG 471
GS Y G P +N+V HD +L D++SY
Sbjct: 643 KDGAVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY--------------- 687
Query: 472 ETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNT 531
QE + R R +M+ QG+ G E +K ++
Sbjct: 688 -------KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDS 734
Query: 532 Y 532
Y
Sbjct: 735 Y 735
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320
N HP V+++++D YW+ E +DG+R D+A+
Sbjct: 298 LNTAHPEVKRYLLDVATYWIREFDIDGWRLDVAN 331
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 497 RQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRF 556
R+++ FL + G P I GDE G T G N+ C + WD ++++K + +
Sbjct: 437 RKVKLLFLFQLTFTGSPCIYYGDEIGMT--GGNDPECRKCMV----WDPEKQNK-ELYEH 489
Query: 557 CCLLTKFRHECESLGLSD--FPTAD 579
L R + +L D F TAD
Sbjct: 490 VKQLIALRKQYRALRRGDVAFLTAD 514
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320
N HP V+++++D YW+ E +DG+R D+A+
Sbjct: 298 LNTAHPEVKRYLLDVATYWIREFDIDGWRLDVAN 331
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 497 RQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRF 556
R+++ FL + G P I GDE G T G N+ C + WD ++++K + +
Sbjct: 437 RKVKLLFLFQLTFTGSPCIYYGDEIGMT--GGNDPECRKCMV----WDPEKQNK-ELYEH 489
Query: 557 CCLLTKFRHECESLGLSD--FPTAD 579
L R + +L D F TAD
Sbjct: 490 VKQLIALRKQYRALRRGDVAFLTAD 514
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 322
F+ ++ +R+++++ +RYWV E VDGFR D+A ++
Sbjct: 139 FDYSNGELREYMINMMRYWVEEFDVDGFRCDVAGLV 174
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 286 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 322
F+ P VR F+V YW+ E H+DG R D + M
Sbjct: 371 VFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASM 407
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 275 GEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL-ASIMTR 324
G+ N + NT + H +V + IVD L W VDGFRFDL IM R
Sbjct: 431 GQIENSAAMNNTAS-EHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKR 480
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 29/169 (17%)
Query: 93 GYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWH 152
Y P GA + V+ +++ A ++C D E + L ++ VW
Sbjct: 124 AYTGPLGAVFSEDSVSLHLWAPTAQGVSVCFF---DGPAGPALETVQL----KESNGVWS 176
Query: 153 VFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTK------IVLDPYAKAVISRAQFGVLGPD 206
V ++++ Y Y+ D + PTK + DPYA+++ + L
Sbjct: 177 VTGPREWENRYYLYEVD---------VYHPTKAQVLKCLAGDPYARSLSANGARTWLVDI 227
Query: 207 ENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESS 255
N L P DE E P D+ IYE+H+R F+ H+ +
Sbjct: 228 NN-----ETLKPASWDELADEK--PKLDSFSDITIYELHIRDFSAHDGT 269
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320
N HP V+++++ YW+ E +DG+R D+A+
Sbjct: 295 LNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVAN 328
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 284 GNTFN---CNHPVVRQFIVDCLRYWVTEMHVDGFRFD 317
G TFN VR+FI++ + YW+ E +VDGFR D
Sbjct: 216 GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLD 252
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 8/39 (20%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLK 274
+ DLIIYE+HV FT GT+ GV+ KLD+LK
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLK 129
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 284 GNTFN---CNHPVVRQFIVDCLRYWVTEMHVDGFRFD 317
G TFN VR+FI++ + YW+ E +VDGFR D
Sbjct: 216 GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLD 252
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 8/39 (20%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLK 274
+ DLIIYE+HV FT GT+ GV+ KLD+LK
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLK 129
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 284 GNTFN---CNHPVVRQFIVDCLRYWVTEMHVDGFRFD 317
G TFN VR+FI++ + YW+ E +VDGFR D
Sbjct: 216 GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLD 252
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 8/39 (20%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLK 274
+ DLIIYE+HV FT GT+ GV+ KLD+LK
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLK 129
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320
N +P V+++++D YW+ E +DG+R D+A+
Sbjct: 298 LNTANPEVKRYLLDVATYWIREFDIDGWRLDVAN 331
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320
N +P V+++++D YW+ E +DG+R D+A+
Sbjct: 298 LNTANPEVKRYLLDVATYWIREFDIDGWRLDVAN 331
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 8/39 (20%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLK 274
+ DLIIYE+HV FT GT+ GV+ KLD+LK
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLK 129
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 284 GNTFN---CNHPVVRQFIVDCLRYWVTEMHVDGFRF 316
G TFN VR+FI++ + YW+ E +VDGFR
Sbjct: 216 GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRL 251
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 8/39 (20%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLK 274
+ DLIIYE+HV FT GT+ GV+ KLD+LK
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLK 129
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 284 GNTFN---CNHPVVRQFIVDCLRYWVTEMHVDGFRFD 317
G TFN VR+FI++ + YW+ E +VDGFR +
Sbjct: 216 GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLE 252
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 322
FN + V +F++ LRYW+ E DGFRFD + M
Sbjct: 314 FNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSM 349
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 322
FN + V +F++ LRYW+ E DGFRFD + M
Sbjct: 314 FNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSM 349
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 270 LDHLKGEF-YNYSG-CGN----TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 318
L GEF NY G GN FN ++P VR++I++ YW+ + +DG+R D+
Sbjct: 158 LSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDGWRLDV 211
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 281 SGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT 323
S G + P +R+++ R W+ + H DG R D MT
Sbjct: 239 SAWGMGLDYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYMT 281
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 268 EKLDHLKGEFYNYSGCGNT-----FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 319
EK +K +NY + N ++P VR+FI + + +W T VDGFR D+A
Sbjct: 358 EKYKKIKSLGWNYESFFSVWIMPRLNHDNPKVREFIKNVILFW-TNKGVDGFRMDVA 413
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRG--SSLWDSVNVY 335
N +PV+ +++ D ++ W+ +M +DG R D M G SL D ++ Y
Sbjct: 196 LNHQNPVIDRYLKDAVKMWI-DMGIDGIRMDAVKHMPFGWQKSLMDEIDNY 245
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 261 GTYLGVVEKLDHLKGEFYN--YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 318
+ G + D + E+Y +S N ++ VRQ + + +++W+ E +DGFR D+
Sbjct: 142 AAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWL-EKGIDGFRMDV 200
Query: 319 ASIMTRGSSL 328
+ +++ L
Sbjct: 201 INFISKEEGL 210
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 275 GEFYNYSGCGN-TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 319
G +Y Y G N N+P V++ ++ +YW+ + VDGFR D A
Sbjct: 155 GMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGA 199
>pdb|3O66|A Chain A, Crystal Structure Of Glycine BetaineCARNITINECHOLINE ABC
TRANSPORTER
pdb|3O66|B Chain B, Crystal Structure Of Glycine BetaineCARNITINECHOLINE ABC
TRANSPORTER
Length = 282
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 28/192 (14%)
Query: 72 SAELETAVIKKPQSQRFQVSKGYPTPFGATLRD--GGVN-FSIFSSNAVSATLCLITLSD 128
+ L+ A IK P+ +G+ F T D G N ++ + + L T+SD
Sbjct: 76 TGALKEAPIKDPKKAXIATQQGFKKKFDQTFFDSYGFANTYAFXVTKETAKKYHLETVSD 135
Query: 129 LQENKVTEEIALDS-FANKTGDVWHVFLKG---DFK-------------------DMLYG 165
L ++ + DS + N+ GD + F K DF D+ G
Sbjct: 136 LAKHSKDLRLGXDSSWXNRKGDGYEGFKKEYGFDFGTVRPXQIGLVYDALNTEKLDVALG 195
Query: 166 YKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPD-ENCWPQMACLVPTPEDE- 223
Y DG+ + + K PYA + ++ + P+ + ++ + T E +
Sbjct: 196 YSTDGRIAAYDLKVLKDDKQFFPPYAASAVATNELLRQHPELKTTINKLTGKISTSEXQR 255
Query: 224 FDWEGDLPLKYP 235
++E D K P
Sbjct: 256 LNYEADGKGKEP 267
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 4 LQFTSSPLLHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFANSKAFENVTK 63
L F + + + ++S F +K S LK+ F +HPN+ +S AF+N
Sbjct: 90 LDFLNQSFIQQKANLLSSSNFEATKKSVLKQ--VQDFEDNDHPNRVLEHLHSTAFQNTPL 147
Query: 64 NLVIRASKSAELETAVIKKPQS 85
+L R + + LE V+ +S
Sbjct: 148 SLPTRGTLES-LENLVVADLES 168
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 4 LQFTSSPLLHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFANSKAFENVTK 63
L F + + + ++S F +K S LK+ F +HPN+ +S AF+N
Sbjct: 91 LDFLNQSFIQQKANLLSSSNFEATKKSVLKQ--VQDFEDNDHPNRVLEHLHSTAFQNTPL 148
Query: 64 NLVIRASKSAELETAVIKKPQS 85
+L R + + LE V+ +S
Sbjct: 149 SLPTRGTLES-LENLVVADLES 169
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 319
FN ++P + +D ++W+ + +DGFR D+A
Sbjct: 413 FNHDNPRTVDYFIDITKFWIDK-GIDGFRIDVA 444
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,197,509
Number of Sequences: 62578
Number of extensions: 1093586
Number of successful extensions: 2279
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2174
Number of HSP's gapped (non-prelim): 101
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)