Query 005552
Match_columns 691
No_of_seqs 360 out of 2290
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 01:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02100 glgX_debranch glycog 100.0 6.3E-93 1.4E-97 812.5 54.1 546 92-685 1-688 (688)
2 PRK03705 glycogen debranching 100.0 2.1E-91 4.6E-96 793.8 50.7 533 90-685 4-657 (658)
3 COG1523 PulA Type II secretory 100.0 1.1E-87 2.3E-92 753.9 40.9 550 88-689 10-695 (697)
4 PRK14510 putative bifunctional 100.0 4.9E-78 1.1E-82 724.5 48.4 506 89-629 7-648 (1221)
5 TIGR02104 pulA_typeI pullulana 100.0 4.7E-71 1E-75 631.4 42.5 463 85-644 2-601 (605)
6 TIGR02102 pullulan_Gpos pullul 100.0 4.5E-70 9.6E-75 639.5 46.8 515 84-687 308-1006(1111)
7 PLN02877 alpha-amylase/limit d 100.0 1.2E-67 2.6E-72 605.7 39.0 510 83-686 203-969 (970)
8 TIGR02103 pullul_strch alpha-1 100.0 3.1E-67 6.6E-72 605.1 40.5 506 83-686 113-897 (898)
9 PRK12568 glycogen branching en 100.0 2.8E-63 6.2E-68 560.5 39.6 506 88-686 113-729 (730)
10 PRK14706 glycogen branching en 100.0 8.3E-62 1.8E-66 551.2 39.2 499 97-688 26-624 (639)
11 KOG0470 1,4-alpha-glucan branc 100.0 1.7E-61 3.7E-66 526.3 32.1 518 96-653 103-733 (757)
12 PRK14705 glycogen branching en 100.0 1.4E-60 3E-65 562.5 38.8 501 88-686 609-1223(1224)
13 PRK12313 glycogen branching en 100.0 2.7E-59 5.9E-64 537.8 37.8 499 96-689 25-631 (633)
14 TIGR01515 branching_enzym alph 100.0 1E-58 2.3E-63 529.4 35.0 489 97-684 16-613 (613)
15 PRK05402 glycogen branching en 100.0 1.7E-58 3.6E-63 537.1 36.9 499 96-687 118-725 (726)
16 PLN02447 1,4-alpha-glucan-bran 100.0 2E-57 4.4E-62 513.8 39.5 509 96-689 105-734 (758)
17 TIGR02402 trehalose_TreZ malto 100.0 5.1E-57 1.1E-61 507.3 30.9 398 107-624 1-540 (542)
18 COG0296 GlgB 1,4-alpha-glucan 100.0 8.3E-53 1.8E-57 464.8 27.5 504 85-684 9-627 (628)
19 PLN02960 alpha-amylase 100.0 1.8E-49 3.9E-54 447.8 38.6 457 148-687 324-893 (897)
20 PLN03244 alpha-amylase; Provis 100.0 1.9E-42 4.2E-47 383.1 34.4 464 147-687 328-868 (872)
21 PRK10785 maltodextrin glucosid 100.0 3.1E-38 6.7E-43 360.1 28.3 253 284-629 297-568 (598)
22 TIGR02403 trehalose_treC alpha 100.0 3.1E-38 6.8E-43 356.5 26.8 316 284-684 161-542 (543)
23 PRK10933 trehalose-6-phosphate 100.0 1.6E-37 3.4E-42 350.2 27.5 318 284-686 168-551 (551)
24 TIGR02456 treS_nterm trehalose 100.0 1.2E-36 2.6E-41 344.4 23.7 331 284-684 165-537 (539)
25 PRK09505 malS alpha-amylase; R 100.0 1.1E-31 2.5E-36 305.4 18.8 243 291-619 435-682 (683)
26 PRK09441 cytoplasmic alpha-amy 99.9 5.8E-27 1.2E-31 262.3 19.6 274 284-684 200-479 (479)
27 TIGR03852 sucrose_gtfA sucrose 99.9 7.2E-21 1.6E-25 207.2 21.4 293 279-625 152-467 (470)
28 PF00128 Alpha-amylase: Alpha 99.8 1.3E-21 2.9E-26 207.1 6.3 174 283-526 135-313 (316)
29 PLN00196 alpha-amylase; Provis 99.8 2.4E-20 5.1E-25 203.6 15.8 233 283-642 169-420 (428)
30 cd02852 Isoamylase_N_term Isoa 99.8 5.5E-20 1.2E-24 166.7 12.5 101 99-201 1-101 (119)
31 PLN02361 alpha-amylase 99.8 5.8E-19 1.3E-23 190.4 21.0 194 283-577 145-355 (401)
32 cd02856 Glycogen_debranching_e 99.8 1.4E-19 3E-24 159.5 11.9 96 97-200 1-96 (103)
33 PRK13840 sucrose phosphorylase 99.8 8.2E-19 1.8E-23 192.3 19.3 294 279-628 156-476 (495)
34 KOG0471 Alpha-amylase [Carbohy 99.8 2.8E-18 6.1E-23 193.3 18.3 169 474-684 345-544 (545)
35 COG0366 AmyA Glycosidases [Car 99.8 1.7E-18 3.7E-23 196.4 16.7 121 496-630 331-495 (505)
36 TIGR02455 TreS_stutzeri trehal 99.8 4.6E-17 1E-21 179.1 25.1 354 274-689 247-685 (688)
37 cd02860 Pullulanase_N_term Pul 99.8 2E-18 4.4E-23 151.4 9.7 92 98-202 1-92 (100)
38 PLN02784 alpha-amylase 99.6 1.8E-14 3.9E-19 163.9 18.6 178 284-567 640-835 (894)
39 PF02922 CBM_48: Carbohydrate- 99.6 3.1E-15 6.6E-20 127.2 7.2 81 97-191 1-85 (85)
40 cd02853 MTHase_N_term Maltooli 99.5 2.2E-14 4.7E-19 121.8 9.0 72 99-195 1-73 (85)
41 cd02854 Glycogen_branching_enz 99.5 2.2E-14 4.7E-19 124.7 8.1 79 103-197 3-88 (99)
42 cd02855 Glycogen_branching_enz 99.3 6.7E-12 1.5E-16 111.3 10.7 86 97-197 9-98 (106)
43 PF14872 GHL5: Hypothetical gl 99.3 1.3E-09 2.8E-14 118.7 24.2 145 97-268 27-200 (811)
44 cd02858 Esterase_N_term Estera 99.1 4.8E-10 1E-14 95.0 8.3 68 105-195 6-74 (85)
45 PRK14511 maltooligosyl trehalo 99.0 1.6E-09 3.4E-14 125.8 12.7 123 502-642 706-854 (879)
46 TIGR02401 trehalose_TreY malto 98.9 6E-09 1.3E-13 120.5 11.8 126 496-642 644-802 (825)
47 KOG2212 Alpha-amylase [Carbohy 98.9 4.2E-08 9E-13 99.7 15.5 269 285-644 184-466 (504)
48 PF11941 DUF3459: Domain of un 98.9 8E-09 1.7E-13 88.4 8.3 89 556-683 1-89 (89)
49 PRK05402 glycogen branching en 98.8 5.5E-09 1.2E-13 122.8 7.6 79 97-194 20-98 (726)
50 PF11852 DUF3372: Domain of un 98.8 5.1E-09 1.1E-13 98.3 5.1 116 551-686 41-167 (168)
51 cd02861 E_set_proteins_like E 98.8 2E-08 4.3E-13 84.6 8.1 68 106-196 3-71 (82)
52 cd02688 E_set E or "early" set 98.5 4.2E-07 9E-12 76.2 8.7 59 105-172 4-63 (83)
53 PF02806 Alpha-amylase_C: Alph 98.4 4.6E-07 1E-11 78.5 5.1 87 594-686 6-94 (95)
54 cd02859 AMPKbeta_GBD_like AMP- 97.1 0.0018 3.8E-08 54.0 7.2 54 106-171 3-57 (79)
55 PF10438 Cyc-maltodext_C: Cycl 96.9 0.0007 1.5E-08 55.8 2.9 72 595-685 7-78 (78)
56 PRK14507 putative bifunctional 96.8 0.013 2.8E-07 73.7 13.5 120 505-642 1502-1665(1693)
57 PF08533 Glyco_hydro_42C: Beta 96.3 0.011 2.5E-07 45.9 5.8 55 601-685 4-58 (58)
58 COG3280 TreY Maltooligosyl tre 94.5 0.016 3.5E-07 65.7 1.5 95 505-618 714-826 (889)
59 PLN03244 alpha-amylase; Provis 94.3 0.052 1.1E-06 62.9 5.0 58 96-157 121-180 (872)
60 smart00632 Aamy_C Aamy_C domai 93.7 0.34 7.4E-06 40.4 7.6 44 594-641 5-49 (81)
61 PF02324 Glyco_hydro_70: Glyco 93.6 0.12 2.7E-06 58.3 6.2 232 284-569 143-400 (809)
62 TIGR02401 trehalose_TreY malto 93.4 0.13 2.8E-06 60.8 6.2 46 285-330 222-267 (825)
63 PRK12568 glycogen branching en 89.2 0.82 1.8E-05 53.7 6.9 76 97-194 29-105 (730)
64 COG1523 PulA Type II secretory 88.2 1.6 3.4E-05 51.1 8.4 78 108-198 70-155 (697)
65 PF02638 DUF187: Glycosyl hydr 86.7 0.72 1.6E-05 49.0 4.1 32 286-317 130-161 (311)
66 cd02857 CD_pullulan_degrading_ 85.9 3 6.4E-05 36.9 7.2 66 97-169 12-80 (116)
67 PF02903 Alpha-amylase_N: Alph 81.7 4 8.6E-05 36.7 6.2 68 103-170 19-89 (120)
68 cd06597 GH31_transferase_CtsY 79.3 2.3 4.9E-05 45.9 4.4 37 285-321 152-188 (340)
69 cd06592 GH31_glucosidase_KIAA1 74.2 3.4 7.4E-05 43.7 4.0 36 285-320 130-165 (303)
70 PRK14705 glycogen branching en 72.3 8.7 0.00019 48.0 7.3 77 97-194 522-601 (1224)
71 PF02065 Melibiase: Melibiase; 71.5 5.3 0.00012 43.8 4.8 37 287-323 160-196 (394)
72 TIGR01531 glyc_debranch glycog 67.4 1.1E+02 0.0024 38.9 15.0 32 290-323 487-518 (1464)
73 cd05816 CBM20_DPE2_repeat2 Dis 66.2 18 0.00038 31.3 6.1 56 107-169 2-65 (99)
74 cd05817 CBM20_DSP Dual-specifi 61.4 21 0.00047 30.8 5.7 59 107-169 2-63 (100)
75 cd06593 GH31_xylosidase_YicI Y 58.2 11 0.00025 39.8 4.1 39 285-324 125-163 (308)
76 COG1649 Uncharacterized protei 55.4 11 0.00024 41.3 3.4 35 287-321 176-210 (418)
77 PF13199 Glyco_hydro_66: Glyco 53.7 15 0.00032 42.2 4.2 36 287-322 235-270 (559)
78 cd05808 CBM20_alpha_amylase Al 51.0 36 0.00078 28.8 5.4 56 107-169 3-64 (95)
79 cd06594 GH31_glucosidase_YihQ 49.6 18 0.00039 38.6 3.9 38 284-321 130-167 (317)
80 cd06602 GH31_MGAM_SI_GAA This 48.3 24 0.00052 38.0 4.6 38 284-321 129-166 (339)
81 cd06600 GH31_MGAM-like This fa 46.6 22 0.00049 37.8 4.1 35 286-320 126-160 (317)
82 PLN02808 alpha-galactosidase 45.3 1.3E+02 0.0028 33.0 9.6 73 597-687 308-385 (386)
83 PF00686 CBM_20: Starch bindin 44.1 47 0.001 28.3 5.0 61 107-169 4-69 (96)
84 cd06599 GH31_glycosidase_Aec37 41.8 28 0.00062 37.0 4.0 35 286-320 134-168 (317)
85 cd06598 GH31_transferase_CtsZ 41.1 30 0.00064 36.8 4.0 35 285-320 130-164 (317)
86 cd06591 GH31_xylosidase_XylS X 40.8 35 0.00076 36.3 4.5 36 285-320 124-159 (319)
87 cd05814 CBM20_Prei4 Prei4, N-t 40.4 61 0.0013 29.0 5.3 59 106-169 2-67 (120)
88 cd02871 GH18_chitinase_D-like 37.1 48 0.001 35.1 4.8 32 288-319 88-119 (312)
89 PF09154 DUF1939: Domain of un 36.5 43 0.00094 25.9 3.1 55 612-683 1-56 (57)
90 PF01055 Glyco_hydro_31: Glyco 36.5 38 0.00083 37.7 4.2 38 285-322 145-182 (441)
91 smart00642 Aamy Alpha-amylase 35.7 12 0.00026 35.8 -0.1 28 243-273 1-28 (166)
92 cd06604 GH31_glucosidase_II_Ma 35.6 40 0.00087 36.2 4.0 35 286-321 126-160 (339)
93 cd05815 CBM20_DPE2_repeat1 Dis 35.3 1.1E+02 0.0024 26.3 6.0 59 107-169 2-66 (101)
94 cd00598 GH18_chitinase-like Th 34.7 45 0.00097 32.6 3.9 31 289-319 83-113 (210)
95 PLN02692 alpha-galactosidase 34.3 81 0.0018 34.8 6.0 72 597-688 332-411 (412)
96 cd06548 GH18_chitinase The GH1 33.0 48 0.001 35.3 4.0 29 290-318 105-133 (322)
97 PRK10658 putative alpha-glucos 30.3 52 0.0011 38.9 4.0 37 286-323 385-421 (665)
98 PRK14510 putative bifunctional 30.1 4.6E+02 0.01 33.6 12.3 20 435-454 1116-1135(1221)
99 PF03711 OKR_DC_1_C: Orn/Lys/A 29.0 48 0.001 30.6 2.7 41 507-572 84-124 (136)
100 smart00636 Glyco_18 Glycosyl h 29.0 60 0.0013 34.5 4.0 29 290-318 87-115 (334)
101 cd02876 GH18_SI-CLP Stabilin-1 28.9 60 0.0013 34.4 3.9 28 290-317 88-115 (318)
102 cd02874 GH18_CFLE_spore_hydrol 27.7 63 0.0014 34.1 3.8 31 289-319 82-112 (313)
103 cd02879 GH18_plant_chitinase_c 27.6 61 0.0013 34.1 3.7 28 290-317 88-115 (299)
104 COG1501 Alpha-glucosidases, fa 27.6 1.2E+02 0.0025 36.6 6.3 36 286-322 381-417 (772)
105 cd05809 CBM20_beta_amylase Bet 27.5 1.4E+02 0.003 25.6 5.3 57 107-169 5-69 (99)
106 PF00704 Glyco_hydro_18: Glyco 27.5 66 0.0014 34.2 4.0 32 290-321 95-126 (343)
107 cd06545 GH18_3CO4_chitinase Th 27.1 67 0.0015 32.8 3.8 30 289-318 78-107 (253)
108 cd05467 CBM20 The family 20 ca 26.6 1.8E+02 0.004 24.3 5.9 59 107-169 2-66 (96)
109 cd06549 GH18_trifunctional GH1 26.5 67 0.0015 33.8 3.7 31 289-319 83-113 (298)
110 cd02872 GH18_chitolectin_chito 25.8 68 0.0015 34.6 3.7 29 290-318 92-120 (362)
111 PRK11052 malQ 4-alpha-glucanot 25.7 1.1E+02 0.0023 36.5 5.4 21 434-454 538-558 (695)
112 cd06542 GH18_EndoS-like Endo-b 25.6 98 0.0021 31.5 4.7 30 289-318 83-112 (255)
113 PRK10426 alpha-glucosidase; Pr 25.6 82 0.0018 37.0 4.5 39 286-324 329-367 (635)
114 cd02875 GH18_chitobiase Chitob 25.4 77 0.0017 34.4 4.0 30 289-318 91-120 (358)
115 KOG0470 1,4-alpha-glucan branc 24.3 27 0.00058 40.7 0.2 103 69-171 46-157 (757)
116 cd06546 GH18_CTS3_chitinase GH 22.9 92 0.002 32.0 3.8 29 290-318 92-120 (256)
117 cd02878 GH18_zymocin_alpha Zym 21.6 91 0.002 33.6 3.6 29 291-319 88-116 (345)
118 PF14509 GH97_C: Glycosyl-hydr 21.6 2.9E+02 0.0062 24.1 6.1 87 597-687 14-103 (103)
119 cd05806 CBM20_laforin Laforin 21.0 4E+02 0.0086 23.7 6.9 61 107-168 3-74 (112)
120 PLN02229 alpha-galactosidase 20.3 2.2E+02 0.0047 31.7 6.1 74 598-689 342-421 (427)
No 1
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=6.3e-93 Score=812.48 Aligned_cols=546 Identities=42% Similarity=0.766 Sum_probs=458.7
Q ss_pred CCCCCCCCeEEeCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCc
Q 005552 92 KGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (691)
Q Consensus 92 ~g~~~~lGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~ 171 (691)
+|.|.+|||++.++||+|+||||+|++|+|+||+..+ ..+..+++|. ++++|||+++|+++.+|++|+|+|+|+
T Consensus 1 ~g~~~~LGa~~~~~g~~F~vwap~A~~V~L~l~~~~~---~~~~~~~~m~---~~~~gvW~~~v~~~~~g~~Y~yrv~g~ 74 (688)
T TIGR02100 1 PGMPFPLGATWDGQGVNFALFSANAEKVELCLFDAQG---EKEEARLPLP---ERTDDIWHGYLPGAQPGQLYGYRVHGP 74 (688)
T ss_pred CCCCcCCCeEEeCCcEEEEEECCCCCEEEEEEEcCCC---CceeeEEecc---cCCCCEEEEEECCCCCCCEEEEEEeee
Confidence 3789999999999999999999999999999996432 1234567885 467899999999999999999999998
Q ss_pred cCCCCCCccCCCccccCccccceecccccCC-------CCC--------CCCCCCCceecccCCCCCCCCCCC-CCCCCC
Q 005552 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGV-------LGP--------DENCWPQMACLVPTPEDEFDWEGD-LPLKYP 235 (691)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~-------~~~--------~~~~~~~~~~~v~~~~~~~~W~~~-~~~~~~ 235 (691)
+.|..|++|++.+.++||||+++..+..++. ..+ .+.......|+|++ .+|.|+++ ..+..+
T Consensus 75 ~~~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d--~~~~w~~~~~~p~~~ 152 (688)
T TIGR02100 75 YDPENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVD--PDFDWGGDEQRPRTP 152 (688)
T ss_pred eCCCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeC--CCCCCCCcccCCCCC
Confidence 8899999999999999999999986533211 000 00000112567776 36999987 455678
Q ss_pred CCCceEEEEeecCccc-cCCCCCCCCcchhccccc--cccc---------------------------------------
Q 005552 236 QRDLIIYEVHVRGFTR-HESSKTEHPGTYLGVVEK--LDHL--------------------------------------- 273 (691)
Q Consensus 236 ~~~~vIYElHVr~Ft~-~~~~~~~~~Gtf~g~~ek--LdyL--------------------------------------- 273 (691)
++++||||+|||+||. +++++...+|||+|++++ ||||
T Consensus 153 ~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~ 232 (688)
T TIGR02100 153 WEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFF 232 (688)
T ss_pred ccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccccc
Confidence 8999999999999998 444445678999999996 9999
Q ss_pred ---------------------------------------C--------------------------CccccccCccCcCC
Q 005552 274 ---------------------------------------K--------------------------GEFYNYSGCGNTFN 288 (691)
Q Consensus 274 ---------------------------------------~--------------------------g~y~n~sg~g~dln 288 (691)
. +.|.++++||++||
T Consensus 233 a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln 312 (688)
T TIGR02100 233 APEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLN 312 (688)
T ss_pred ccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCcccccc
Confidence 0 22334678999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcCCCCCCc
Q 005552 289 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGV 368 (691)
Q Consensus 289 ~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~dp~~~~~ 368 (691)
+++|+||+||+++++||++||||||||||+|..|.+....+.. ..++.+++.++|+++++
T Consensus 313 ~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~--------------------~~~~~~~i~~d~~~~~~ 372 (688)
T TIGR02100 313 LSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDM--------------------LSGFFTAIRQDPVLAQV 372 (688)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcc--------------------cHHHHHHHHhCcccCCe
Confidence 9999999999999999999999999999999999764211111 13477888888899999
Q ss_pred EEEeecCCCC-CcccccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCCC
Q 005552 369 KLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDG 447 (691)
Q Consensus 369 ~liaE~w~~~-~~~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~ 447 (691)
+||||.|+.+ +.+++++||. .+++||+.|++.+|+|++|+.+....|+..|+++.++|....+.|.++||||+|||+
T Consensus 373 ~ligE~W~~~~~~~~~~~~~~--~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~ 450 (688)
T TIGR02100 373 KLIAEPWDIGPGGYQVGNFPP--GWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHDG 450 (688)
T ss_pred EEEEeeecCCCCcccccCCCC--ceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCCC
Confidence 9999999986 5667777874 679999999999999999998889999999999988887666678999999999999
Q ss_pred CchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCC
Q 005552 448 FSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGG 527 (691)
Q Consensus 448 ~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g 527 (691)
+||+|+++|+.|||.+||+.|+||+++|+|||||.||++.+..+.++|.+++|++++++||+||+||||||||||+++.|
T Consensus 451 ~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G 530 (688)
T TIGR02100 451 FTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQG 530 (688)
T ss_pred chHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCCC
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCCCCCCCC-------cceEe---ccCCCCCCCCCC-C
Q 005552 528 NNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTA-------DRLQW---HGHAPGLPDWSD-K 596 (691)
Q Consensus 528 ~~n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~~~-------~~i~~---~~~~~~~~~~~~-~ 596 (691)
++|+||+++++++|+|+..+.+ .++++|+|+||+|||+||+|+.+.+... ..|+| +|..+..++|+. .
T Consensus 531 ~~n~y~~~~~~~~~dW~~~~~~-~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~w~~~~ 609 (688)
T TIGR02100 531 NNNAYCQDNEIGWVDWSLDEGD-DELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPMTEEDWENPE 609 (688)
T ss_pred CCCCccCCCcccccCccccccc-HHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcCChhhcCCCC
Confidence 9999999999999999977666 8999999999999999999999877642 46999 777888888976 4
Q ss_pred CcEEEEEEEccC-------CCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCC
Q 005552 597 SRFVAFTLIDSV-------KGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLD 669 (691)
Q Consensus 597 ~~vlaf~r~~~~-------~~~llVv~N~~~~~~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (691)
.++++|.+.... .+.++|++|.+.+.+++.||..+ ..|+++++|.......+. ...
T Consensus 610 ~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~~-~~w~~~~dt~~~~~~~~~----------------~~~ 672 (688)
T TIGR02100 610 TRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGGG-GRWELVLDTADEEAPGIH----------------LDA 672 (688)
T ss_pred CCEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCCC-CcEEEEecCCCCCCcccc----------------ccC
Confidence 689999997532 14799999999999999999753 589999999653321110 022
Q ss_pred CceEEeeCCeEEEEEe
Q 005552 670 ANLYPMLSYSSIILLL 685 (691)
Q Consensus 670 ~~~~~l~p~s~~Vl~~ 685 (691)
...+.|+|+|++||++
T Consensus 673 ~~~~~v~~~s~~vl~~ 688 (688)
T TIGR02100 673 GQEAELPARSVLLLRR 688 (688)
T ss_pred CCEEEEcCCEEEEEeC
Confidence 4579999999999974
No 2
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.1e-91 Score=793.79 Aligned_cols=533 Identities=37% Similarity=0.704 Sum_probs=450.6
Q ss_pred ccCCCCCCCCeEEeCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEc
Q 005552 90 VSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFD 169 (691)
Q Consensus 90 ~~~g~~~~lGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~ 169 (691)
+.+|.+.||||++.++||+|+||||+|++|+|+||+..+ . ...++|. ++++|||+++|+++.+|++|+|+|+
T Consensus 4 ~~~g~~~pLGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~--~---~~~~~m~---~~~~gvW~~~v~~~~~G~~Y~yrv~ 75 (658)
T PRK03705 4 LAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDENG--Q---EQRYDLP---ARSGDIWHGYLPGARPGLRYGYRVH 75 (658)
T ss_pred cCCCCCCCcceEEeCCCEEEEEECCCCCEEEEEEEcCCC--C---eeeEeee---eccCCEEEEEECCCCCCCEEEEEEc
Confidence 567999999999999999999999999999999987422 1 1357775 4678999999999999999999999
Q ss_pred CccCCCCCCccCCCccccCccccceecccccCCC--C----C--CCCCCCCceecccCCCCCCCCCCCCCCCCCCCCceE
Q 005552 170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVL--G----P--DENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLII 241 (691)
Q Consensus 170 g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~--~----~--~~~~~~~~~~~v~~~~~~~~W~~~~~~~~~~~~~vI 241 (691)
|++.|..|++|++.+.++||||+++.....++.. + + .+...-...++|++ .+|+|+++.++..+++++||
T Consensus 76 g~~~p~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~W~~~~~p~~~~~~~vI 153 (658)
T PRK03705 76 GPWQPAQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVD--DHYDWEDDAPPRTPWGSTVI 153 (658)
T ss_pred cccCcccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEec--CCCCCCCCCCCCCCccccEE
Confidence 9988999999999999999999999764221100 0 0 00000013456665 57999998888888999999
Q ss_pred EEEeecCccc-cCCCCCCCCcchhccccc--cccc---------------------------------------------
Q 005552 242 YEVHVRGFTR-HESSKTEHPGTYLGVVEK--LDHL--------------------------------------------- 273 (691)
Q Consensus 242 YElHVr~Ft~-~~~~~~~~~Gtf~g~~ek--LdyL--------------------------------------------- 273 (691)
||+|||+||. +++++...+|||+|++++ ||||
T Consensus 154 YE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y 233 (658)
T PRK03705 154 YEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY 233 (658)
T ss_pred EEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc
Confidence 9999999997 666777889999999974 9999
Q ss_pred -----------------------------------C------------------------CccccccCccCcCCCCCHHH
Q 005552 274 -----------------------------------K------------------------GEFYNYSGCGNTFNCNHPVV 294 (691)
Q Consensus 274 -----------------------------------~------------------------g~y~n~sg~g~dln~~~p~v 294 (691)
. |.|.++++||++||+++|+|
T Consensus 234 gt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~V 313 (658)
T PRK03705 234 ASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAV 313 (658)
T ss_pred CCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHH
Confidence 0 11124568999999999999
Q ss_pred HHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcCCCCCCcEEEeec
Q 005552 295 RQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEA 374 (691)
Q Consensus 295 r~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~dp~~~~~~liaE~ 374 (691)
|++|+++++||++||||||||||+|.+|.+.+.+|.. .++.++++.+|++++++||||+
T Consensus 314 r~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~---------------------~~~~~ai~~d~vl~~~~ligE~ 372 (658)
T PRK03705 314 VDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQD---------------------APLFTAIQNDPVLSQVKLIAEP 372 (658)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchh---------------------hHHHHHHhhCccccceEEEEec
Confidence 9999999999999999999999999999876545432 2367888889999999999999
Q ss_pred CCCC-CcccccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCCCCchhhh
Q 005552 375 WDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADL 453 (691)
Q Consensus 375 w~~~-~~~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~ 453 (691)
|+.+ +.++++.||. .+++||+.|++.+|.++.+..+...+++.+++|+.++|...++.|.++||||++||++||+|+
T Consensus 373 Wd~~~~~~~~g~~~~--~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~ 450 (658)
T PRK03705 373 WDIGPGGYQVGNFPP--PFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDC 450 (658)
T ss_pred ccCCCChhhhcCCCc--ceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHHH
Confidence 9987 5678888874 689999999999999999888888899999999988887667789999999999999999999
Q ss_pred hhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCCCCCCC
Q 005552 454 VSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYC 533 (691)
Q Consensus 454 ~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~ 533 (691)
++|+.|||.+||+.++||+++|+|||||.||++.+..+.++|.+++|+++++||++||+||||+|||||++|.|++|+||
T Consensus 451 ~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~grtq~G~nN~y~ 530 (658)
T PRK03705 451 VCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYC 530 (658)
T ss_pred HhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhccCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCCCCCCC--CcceEec---cCCCCCCCCCCCCcEEEEEEEccC
Q 005552 534 HDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPT--ADRLQWH---GHAPGLPDWSDKSRFVAFTLIDSV 608 (691)
Q Consensus 534 ~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~~--~~~i~~~---~~~~~~~~~~~~~~vlaf~r~~~~ 608 (691)
+++.+++|+|+... .++++|+|+||+|||+||+|+..++.. ...|+|. +..+...+|.+....++|...
T Consensus 531 ~~~~i~~~dW~~~~---~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~~~~~~~~--- 604 (658)
T PRK03705 531 QDNALTWLDWSQAD---RGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPKQLQILLS--- 604 (658)
T ss_pred CCCCccccccchhh---hHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcceEEEEEEC---
Confidence 99999999999653 799999999999999999999988732 2478996 444566778766778888874
Q ss_pred CCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEEe
Q 005552 609 KGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLL 685 (691)
Q Consensus 609 ~~~llVv~N~~~~~~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~~ 685 (691)
+.++|++|.+.++++++||. +.|+++++++... . + .....+.++++|++||..
T Consensus 605 -~~~~v~~N~~~~~~~~~lp~---~~w~~~~~~~~~~--~------~------------~~~~~~~~~~~~~~~~~~ 657 (658)
T PRK03705 605 -DRWLIAINATLEVTEIVLPE---GEWHAIPPFAGED--N------P------------VITAVWHGPAHGVCVFQR 657 (658)
T ss_pred -CCEEEEECCCCCCeEEECCC---cceEEEEccCCCc--c------c------------ccCceeeecCcEEEEEec
Confidence 56999999999999999996 3899996554321 0 0 112457899999999875
No 3
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-87 Score=753.86 Aligned_cols=550 Identities=44% Similarity=0.792 Sum_probs=474.3
Q ss_pred ccccCCCCCCCCeEEe---CCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceE
Q 005552 88 FQVSKGYPTPFGATLR---DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLY 164 (691)
Q Consensus 88 ~~~~~g~~~~lGa~~~---~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y 164 (691)
+.+..|.|.||||++. +.|++|.+|+.+|++|.|||++...-. +....++++ .+.+.+|++.+|+..+|+.|
T Consensus 10 ~~~~~g~~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~--~~~~~~~~~---~~~G~iw~~~~p~~~~g~~y 84 (697)
T COG1523 10 MTLQPGKPYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNT--EEGRLYPYD---GELGAIWHLWLPGAKPGQVY 84 (697)
T ss_pred eeeccCCcccccceeeeccCcceEEeeeccccceEEEEecCccccc--ccccccccC---CccccEEEEEcCCCceeeEE
Confidence 5667899999999984 489999999999999999998765321 222236664 56778999999999999999
Q ss_pred EEEEcCccCCCCCCccCCCccccCccccceecccccC---CCCC------------CCCCCCCceecccCCCCCCCCCCC
Q 005552 165 GYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFG---VLGP------------DENCWPQMACLVPTPEDEFDWEGD 229 (691)
Q Consensus 165 ~y~i~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~---~~~~------------~~~~~~~~~~~v~~~~~~~~W~~~ 229 (691)
.|+++|++.|..|++|++.+...||||+++.+...++ ..+. .+...+...++|+++ .|+|+.+
T Consensus 85 ~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~--~~~w~~~ 162 (697)
T COG1523 85 GYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDP--LFDWEND 162 (697)
T ss_pred EEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEecc--ccccccC
Confidence 9999999999999999999999999999998776554 1100 111123344666652 3999999
Q ss_pred CCCCCCCCCceEEEEeecCcc-ccCCCCCCCCcchhccccc--cccc---------------------------------
Q 005552 230 LPLKYPQRDLIIYEVHVRGFT-RHESSKTEHPGTYLGVVEK--LDHL--------------------------------- 273 (691)
Q Consensus 230 ~~~~~~~~~~vIYElHVr~Ft-~~~~~~~~~~Gtf~g~~ek--LdyL--------------------------------- 273 (691)
.++..|++++||||+|||+|| .+++++...+|||+|++++ |+||
T Consensus 163 ~~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGY 242 (697)
T COG1523 163 KPPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGY 242 (697)
T ss_pred CCCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCC
Confidence 888889999999999999999 5888888899999999999 9998
Q ss_pred -------------------------------------------------------------------------CCccccc
Q 005552 274 -------------------------------------------------------------------------KGEFYNY 280 (691)
Q Consensus 274 -------------------------------------------------------------------------~g~y~n~ 280 (691)
+|.|.|+
T Consensus 243 dP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~ 322 (697)
T COG1523 243 DPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNG 322 (697)
T ss_pred CcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecC
Confidence 4456689
Q ss_pred cCccCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHh
Q 005552 281 SGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLIS 360 (691)
Q Consensus 281 sg~g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~ 360 (691)
+||||++|+++||||++|+|+|+||++||||||||||+|+.+++++...+ ....++..+.
T Consensus 323 TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~--------------------~~~~l~~~~~ 382 (697)
T COG1523 323 TGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFD--------------------INANLFLAGE 382 (697)
T ss_pred CccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccc--------------------cCcchhhhcc
Confidence 99999999999999999999999999999999999999999998753111 1134778889
Q ss_pred cCCCCCCcEEEeecCCCC-CcccccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceE
Q 005552 361 NDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSI 439 (691)
Q Consensus 361 ~dp~~~~~~liaE~w~~~-~~~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~v 439 (691)
.+|++.++++|||+||.+ +.+++|.||....|++||+.|+|.+|.|++|+.+....|+.++.||.++|...++.|.++|
T Consensus 383 ~~p~l~~~kliAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~~~~p~~sI 462 (697)
T COG1523 383 GDPVLSGVKLIAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRNGRRPSQSI 462 (697)
T ss_pred CCccccCceeeecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhccCCCcccee
Confidence 999999999999999998 7899999996668999999999999999999999999999999999999988889999999
Q ss_pred EEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCC
Q 005552 440 NFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGD 519 (691)
Q Consensus 440 nyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~ 519 (691)
||+++||++||+|+++|+.|||.+||+.++||+++|+|||||.+|.+.++.+...|.++.+++++.+|+++|+|||-+||
T Consensus 463 Nyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~~gD 542 (697)
T COG1523 463 NYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLLAGD 542 (697)
T ss_pred eEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCCCCCCCC----cceEe---ccCCCCCCC
Q 005552 520 EYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTA----DRLQW---HGHAPGLPD 592 (691)
Q Consensus 520 E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~~~----~~i~~---~~~~~~~~~ 592 (691)
|+|+++.||+|+||+++++|+++|+. +. ..++++|.|.||+|||++|+|+...+..+ .+|.| ++..+...+
T Consensus 543 e~~rtq~gnnNsYcqdn~inwlDW~~-~~-~~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~g~~~~~~~ 620 (697)
T COG1523 543 EFGRTQYGNNNAYCQDNEINWLDWST-EA-NNDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWNGIPLTQDD 620 (697)
T ss_pred ccccccccccccccCCcccceeccCc-cc-cHHHHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccCCeeechhc
Confidence 99999999999999999999999993 33 38999999999999999999999777664 46774 566677788
Q ss_pred CCCC-CcEEEEEEEccCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCc
Q 005552 593 WSDK-SRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDAN 671 (691)
Q Consensus 593 ~~~~-~~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (691)
|+.. ...+++.+.+. ..+++|++|...+...+.||... .+|..++++...... ...
T Consensus 621 w~~~~~~~l~~~l~~~-~~~~lv~~N~~~~~~~~~lp~~~-~~~~~~~~~~~~~~~---------------------~~~ 677 (697)
T COG1523 621 WNNGFTGALAVVLDGD-KERLLVLINATAEPVEFELPEDE-GKWAGLVDTSTPPGF---------------------DIR 677 (697)
T ss_pred ccCCCCceEEEEecCC-CccEEEEecCCccccceeccccc-CcceeeecccCCCCc---------------------ccc
Confidence 8775 67888888654 37999999999999999999865 579999988654311 112
Q ss_pred eEEeeCCeEEEEEecCCC
Q 005552 672 LYPMLSYSSIILLLSPDE 689 (691)
Q Consensus 672 ~~~l~p~s~~Vl~~~~~~ 689 (691)
.++++++|+.||....+.
T Consensus 678 ~~~~~~~s~~vl~~~~~~ 695 (697)
T COG1523 678 EVSLPGRSVLVLTRRSEV 695 (697)
T ss_pred eeecCCcEEEEEeecccc
Confidence 688999999999876643
No 4
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=4.9e-78 Score=724.50 Aligned_cols=506 Identities=38% Similarity=0.688 Sum_probs=424.9
Q ss_pred cccCCCCCCCCeEEeCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEE
Q 005552 89 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKF 168 (691)
Q Consensus 89 ~~~~g~~~~lGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i 168 (691)
.+..|.+.||||++.++||+|+||||+|++|+||||+. |.. ....+++|. .+++|||+++|+++.+|++|+|+|
T Consensus 7 ~~~~g~~~plGA~~~~~gv~F~v~ap~A~~V~L~lf~~--~~~-~~~~~~~l~---~~~g~vW~~~i~~~~~g~~Ygyrv 80 (1221)
T PRK14510 7 SVSPGFREPLGAVPDGGGVNLALFSGAAERVEFCLFDL--WGV-REEARIKLP---GRTGDVWHGFIVGVGPGARYGNRQ 80 (1221)
T ss_pred ccCCCCCCCCceEEECCeEEEEEECCCCCEEEEEEEEC--CCC-CeeEEEECC---CCcCCEEEEEEccCCCCcEEEEEe
Confidence 35579999999999999999999999999999999864 322 223467774 468899999999999999999999
Q ss_pred cCccCCCCCCccCCCccccCccccceecccccC--CC------CCC--CCCCC-CceecccCCCCCCCCCCCCCCCCCCC
Q 005552 169 DGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFG--VL------GPD--ENCWP-QMACLVPTPEDEFDWEGDLPLKYPQR 237 (691)
Q Consensus 169 ~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~--~~------~~~--~~~~~-~~~~~v~~~~~~~~W~~~~~~~~~~~ 237 (691)
+|++.|..|++|+|.+.++||||+++..+..++ +. +.. .+... ...++|+ ++|+|.++.++..+|+
T Consensus 81 ~g~~~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~---~~~~W~~~~~~~~~~~ 157 (1221)
T PRK14510 81 EGPGGPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVP---TPFTWAPRSPLHGDWD 157 (1221)
T ss_pred ccCCCcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceee---cccccCCCCCCCCCcc
Confidence 999888999999999999999999998654321 10 000 00000 1123443 2799999888888999
Q ss_pred CceEEEEeecCccc-cCCCCCCCCcchhccc--cccccc-----------------------------------------
Q 005552 238 DLIIYEVHVRGFTR-HESSKTEHPGTYLGVV--EKLDHL----------------------------------------- 273 (691)
Q Consensus 238 ~~vIYElHVr~Ft~-~~~~~~~~~Gtf~g~~--ekLdyL----------------------------------------- 273 (691)
++||||+|||+||. ++..|...+|+|+++. ++|+||
T Consensus 158 d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~ 237 (1221)
T PRK14510 158 DSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAP 237 (1221)
T ss_pred cCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCc
Confidence 99999999999997 6777778899999999 558888
Q ss_pred ---------------------------------------------------CC-----------ccccccCccCcCCCCC
Q 005552 274 ---------------------------------------------------KG-----------EFYNYSGCGNTFNCNH 291 (691)
Q Consensus 274 ---------------------------------------------------~g-----------~y~n~sg~g~dln~~~ 291 (691)
.. .|.+++||++.+|+++
T Consensus 238 dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~ 317 (1221)
T PRK14510 238 DPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLER 317 (1221)
T ss_pred ChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCC
Confidence 01 1235678999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccEEEEeccccccccC-cccccccccCcccccccccCCCCCCChhHHHHHhcCCCCCCcEE
Q 005552 292 PVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGS-SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKL 370 (691)
Q Consensus 292 p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~-~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~dp~~~~~~l 370 (691)
|+|+++|+|+++||++ |||||||||+|..+.+.+ .||+.+ .+.++.+..++++.++++
T Consensus 318 p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~--------------------~~~l~ai~~d~~l~~~~l 376 (1221)
T PRK14510 318 PFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEF--------------------RQFLKAMDQDPVLRRLKM 376 (1221)
T ss_pred HHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHH--------------------HHHHHHhCCCcCcccCcE
Confidence 9999999999999998 999999999999996532 355542 235677777888899999
Q ss_pred EeecCCCC-CcccccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCCCCc
Q 005552 371 IAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFS 449 (691)
Q Consensus 371 iaE~w~~~-~~~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~r 449 (691)
|||.|+.+ +.++++.||. .+++||+.|++.+|+|++|+.+...+++..+.++.+.|....+.+..+||||+|||++|
T Consensus 377 igE~Wd~~~~~~~~g~f~~--~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~r 454 (1221)
T PRK14510 377 IAEVWDDGLGGYQYGKFPQ--YWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFT 454 (1221)
T ss_pred EEecccCCCCccccCCCCc--ceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchH
Confidence 99999986 4578888886 37899999999999999998887889999999998888765677899999999999999
Q ss_pred hhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCCC
Q 005552 450 LADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNN 529 (691)
Q Consensus 450 l~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~ 529 (691)
|+|+++|+.|||.+|||.|+||.++|+|||||.||++.+..+..++.+++|++++++||+||+||||||||+|+++.||+
T Consensus 455 l~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g~tq~Gn~ 534 (1221)
T PRK14510 455 LLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAGRSQNGNN 534 (1221)
T ss_pred HHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCCCCCCCC--------cceEecc---CCCCCCCCCC-CC
Q 005552 530 NTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTA--------DRLQWHG---HAPGLPDWSD-KS 597 (691)
Q Consensus 530 n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~~~--------~~i~~~~---~~~~~~~~~~-~~ 597 (691)
|+||+++.+++|+|+..+ .++++|||+||+|||++|+|+.+++... .+|.|+. ..+..++|.+ ..
T Consensus 535 n~y~~~~~r~~~~W~~~~---~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~~~g~~~~~~~w~~~~~ 611 (1221)
T PRK14510 535 NGYAQDNNRGTYPWGNED---EELLSFFRRLIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLRRKGEQNQDRFWDKRST 611 (1221)
T ss_pred CCCCCCCccccCCccccc---HHHHHHHHHHHHHHHhChhhccCccccCcccccCCCCCEEEECCCCCcCChhhcCCCCC
Confidence 999999999999998753 6899999999999999999999988742 4799964 4455566754 35
Q ss_pred cEEEEEEEccC-----CCEEEEEEeCCCCcEEEEcCC
Q 005552 598 RFVAFTLIDSV-----KGEIYVAFNASHLPVIISLPK 629 (691)
Q Consensus 598 ~vlaf~r~~~~-----~~~llVv~N~~~~~~~v~lp~ 629 (691)
+.+++...... ++.++|++|++.+++++.||.
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 612 EALVAVLNRPAGERQVDDRFAVLLNSHHEELTLHLPE 648 (1221)
T ss_pred CEEEEEEecCCCCCCCCCeEEEEECCCCCCeEEECCh
Confidence 66676664321 247999999999999999996
No 5
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=4.7e-71 Score=631.45 Aligned_cols=463 Identities=29% Similarity=0.478 Sum_probs=357.7
Q ss_pred cccccccCCCCCCCCeEEeCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceE
Q 005552 85 SQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLY 164 (691)
Q Consensus 85 ~~~~~~~~g~~~~lGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y 164 (691)
|+..+.|.| +|||++.++||+|+||||+|++|+|+|++ +|+...+...++|.+ ..+|||+++|+++.+|++|
T Consensus 2 ~~~~~~~~~---~lG~~~~~~~~~F~vwaP~a~~V~l~~~~--~~~~~~~~~~~~m~~---~~~gvw~~~i~~~~~g~~Y 73 (605)
T TIGR02104 2 FDDKFYYDG---ELGAVYTPEKTVFRVWAPTATEVELLLYK--SGEDGEPYKVVKMKR---GENGVWSAVLEGDLHGYFY 73 (605)
T ss_pred cccccCCCC---CCccEEECCeeEEEEECCCCCEEEEEEEc--CCCCCccceEEeccc---CCCCEEEEEECCCCCCCEE
Confidence 566667776 79999999999999999999999999874 443333445788863 5689999999999999999
Q ss_pred EEEEcCccCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCC--CCCCCCCCCC-CCCCCCCCceE
Q 005552 165 GYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTP--EDEFDWEGDL-PLKYPQRDLII 241 (691)
Q Consensus 165 ~y~i~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~W~~~~-~~~~~~~~~vI 241 (691)
+|+|++. | ....++||||+++..++. .|+|+++ ..+++|..+. ++..+++++||
T Consensus 74 ~y~v~~~-----~----~~~~~~DPya~~~~~~~~--------------~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vI 130 (605)
T TIGR02104 74 TYQVCIN-----G----KWRETVDPYAKAVTVNGK--------------RGAVIDLERTNPEGWEKDHRPRLENPEDAII 130 (605)
T ss_pred EEEEEcC-----C----CeEEEcCCCcceeccCCC--------------cEEEEcccccCccCcccccCCCCCChhHcEE
Confidence 9999853 1 124689999999865432 2455552 2467898876 66778899999
Q ss_pred EEEeecCccccCCCCCCCCcchhccccc-----------cccc-------------------------------------
Q 005552 242 YEVHVRGFTRHESSKTEHPGTYLGVVEK-----------LDHL------------------------------------- 273 (691)
Q Consensus 242 YElHVr~Ft~~~~~~~~~~Gtf~g~~ek-----------LdyL------------------------------------- 273 (691)
||+|||+||.++++++..+|||+|++++ ||||
T Consensus 131 YElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y 210 (605)
T TIGR02104 131 YELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNY 210 (605)
T ss_pred EEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccC
Confidence 9999999999888888889999999987 8998
Q ss_pred --------------------------------------------------------CCccc---------cccCccCcCC
Q 005552 274 --------------------------------------------------------KGEFY---------NYSGCGNTFN 288 (691)
Q Consensus 274 --------------------------------------------------------~g~y~---------n~sg~g~dln 288 (691)
++.|| ++++||+++|
T Consensus 211 ~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 290 (605)
T TIGR02104 211 NVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTA 290 (605)
T ss_pred CCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcc
Confidence 01121 3567889999
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcCCCCCCc
Q 005552 289 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGV 368 (691)
Q Consensus 289 ~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~dp~~~~~ 368 (691)
+++|+||+||+++++||++||||||||||+|.++..+ +|+. +.+.+ +++.+++
T Consensus 291 ~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~--~~~~-----------------------~~~~~--~~~~p~~ 343 (605)
T TIGR02104 291 SEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIE--TMNE-----------------------IRKAL--NKIDPNI 343 (605)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHH--HHHH-----------------------HHHHH--HhhCCCe
Confidence 9999999999999999999999999999999888543 3432 23333 2245699
Q ss_pred EEEeecCCCCC-cc--cc---cCCCCCcccceecCcccHHHHH---------HHcCCCCcHHHHHHHHcCCCccc--cCC
Q 005552 369 KLIAEAWDTGG-LY--QV---GIFPHWGIWSEWNGKYRDIVRQ---------FIKGTDGFAGAFAECLCGSPNLY--QGG 431 (691)
Q Consensus 369 ~liaE~w~~~~-~~--~~---~~fp~~g~~~~wn~~f~d~~r~---------~~~g~~~~~~~~~~~l~g~~~~~--~~~ 431 (691)
++|||.|+.+. +. +. .+...+..++.||+.|++.++. ++.|..+....++..+.++...+ ...
T Consensus 344 ~ligE~w~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~ 423 (605)
T TIGR02104 344 LLYGEGWDLGTPLPPEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPS 423 (605)
T ss_pred EEEEccCCCCCCcchhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccc
Confidence 99999998762 11 00 1112223478999999999983 44454445567777777764433 123
Q ss_pred CCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCC
Q 005552 432 GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQG 511 (691)
Q Consensus 432 ~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspG 511 (691)
...|.++|||++|||+.||+|++++..+ +. ....+.+++|++++++||+||
T Consensus 424 ~~~p~~~vnyl~~HD~~~l~d~l~~~~~------~~-----------------------~~~~~~~r~rla~alllts~G 474 (605)
T TIGR02104 424 ALDPSQSINYVECHDNHTLWDKLSLANP------DE-----------------------TEEQLKKRQKLATAILLLSQG 474 (605)
T ss_pred cCChhheEEEEEecCCCCHHHHHHhhCC------CC-----------------------CHHHHHHHHHHHHHHHHHcCC
Confidence 4578899999999999999999875321 10 013457788999999999999
Q ss_pred ceeEecCCccccCCCCCCCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCC
Q 005552 512 VPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLP 591 (691)
Q Consensus 512 iP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~ 591 (691)
+||||||||+|+++.+++|+||+++.+++|+|+..+.. .++++|||+||+|||++|+|+.+++.. +.|+.....
T Consensus 475 iP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~~~~-~~~~~~~~~Li~lRk~~pal~~~~~~~---i~~~~~~~~-- 548 (605)
T TIGR02104 475 IPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDRKATF-KDDVNYIKGLIALRKAHPAFRLSSAED---IRKHLEFLP-- 548 (605)
T ss_pred CceeecchhhhccCCCCCCCccCCCcccccCccccccc-hHHHHHHHHHHHHHhhCccccCCChhh---hcceeEEcc--
Confidence 99999999999999999999999999999999976655 789999999999999999999987643 444433210
Q ss_pred CCCCCCcEEEEEEEccCC----CEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCC
Q 005552 592 DWSDKSRFVAFTLIDSVK----GEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKP 644 (691)
Q Consensus 592 ~~~~~~~vlaf~r~~~~~----~~llVv~N~~~~~~~v~lp~~~g~~w~~l~~t~~~ 644 (691)
...+++++|.|..... +.++|++|++.+++++.||.. +.|+.++++..+
T Consensus 549 --~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~~~~v~lp~~--~~w~~~~~~~~~ 601 (605)
T TIGR02104 549 --AEPSGVIAYRLKDHANGDPWKDIIVIHNANPEPVDIQLPSD--GTWNVVVDNKNA 601 (605)
T ss_pred --CCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCCCeEEECCCC--CCEEEEECCCcC
Confidence 1346799999986432 479999999999999999853 489999998654
No 6
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=4.5e-70 Score=639.55 Aligned_cols=515 Identities=23% Similarity=0.372 Sum_probs=371.1
Q ss_pred ccccccccCCCCCCCCeEEeCCc-EEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcC-----
Q 005552 84 QSQRFQVSKGYPTPFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKG----- 157 (691)
Q Consensus 84 ~~~~~~~~~g~~~~lGa~~~~~g-~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g----- 157 (691)
.|+..+.+.| +|||++.++| ++|+||||+|++|+|+||+++++.. +..+++|. +..+|||+++|++
T Consensus 308 ~~d~~y~y~g---~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~--~~~~~~m~---~~~~GvW~v~v~~~~~G~ 379 (1111)
T TIGR02102 308 LKDEMYAYDG---KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDK--VVGTVELK---KGDRGVWEVQLTKENTGI 379 (1111)
T ss_pred hhhhhhccCC---CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCC--ceeeEecc---cCCCCEEEEEECCcccCc
Confidence 5566566655 7999998776 8999999999999999998766532 33578886 4678999999995
Q ss_pred -CCCCceEEEEEcCccCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCC----CCCCCCCCCCC
Q 005552 158 -DFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPE----DEFDWEGDLPL 232 (691)
Q Consensus 158 -~~~g~~Y~y~i~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~W~~~~~~ 232 (691)
+++|.+|+|+|++. ++.+.++||||+++....... .+.......++|+++. ..|.|.+ .+.
T Consensus 380 ~d~~G~~Y~Y~V~~~---------~~~~~~~DPYA~al~~~n~~~----~~~~~~~~ks~vvD~~~~~p~~~~~~~-~~~ 445 (1111)
T TIGR02102 380 DSLTGYYYHYEITRG---------GDKVLALDPYAKSLAAWNDAT----SDDQIKVAKAAFVDPSSLGPQELDFAK-IEN 445 (1111)
T ss_pred ccCCCceEEEEEECC---------CceEEEeChhheEEeccCccc----ccccCCCCceEEEcCcccCcccccccc-ccc
Confidence 57899999999863 245689999999997522100 0000011234555531 2466764 233
Q ss_pred CCCCCCceEEEEeecCccccCCCCCC---CCcchhccccccccc--------------C---------------------
Q 005552 233 KYPQRDLIIYEVHVRGFTRHESSKTE---HPGTYLGVVEKLDHL--------------K--------------------- 274 (691)
Q Consensus 233 ~~~~~~~vIYElHVr~Ft~~~~~~~~---~~Gtf~g~~ekLdyL--------------~--------------------- 274 (691)
..+++++||||+|||+||.+++++.+ .+|||+|++++|||| +
T Consensus 446 ~~~~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~ 525 (1111)
T TIGR02102 446 FKKREDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNT 525 (1111)
T ss_pred cCCccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCcccccccccccccccccccccccc
Confidence 34679999999999999987776654 479999999999998 0
Q ss_pred -----------------------------------------------------------------Ccccc---c------
Q 005552 275 -----------------------------------------------------------------GEFYN---Y------ 280 (691)
Q Consensus 275 -----------------------------------------------------------------g~y~n---~------ 280 (691)
..||. .
T Consensus 526 ~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~ 605 (1111)
T TIGR02102 526 NYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRT 605 (1111)
T ss_pred ccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCccc
Confidence 01110 0
Q ss_pred cCccCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHh
Q 005552 281 SGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLIS 360 (691)
Q Consensus 281 sg~g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~ 360 (691)
+.||+++|++++|||++|+|+++||++||||||||||+|++++.. +|.. .+.+..+
T Consensus 606 ~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~--~~~~----------------------~~~~l~~ 661 (1111)
T TIGR02102 606 SFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAA--SIEI----------------------AYKEAKA 661 (1111)
T ss_pred ccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHH--HHHH----------------------HHHHHHH
Confidence 124678899999999999999999999999999999999877542 2221 1223333
Q ss_pred cCCCCCCcEEEeecCCCC---CcccccCCCCCcccceec---CcccHHHHHHHcCC-------------CCcHHHHHHHH
Q 005552 361 NDPILRGVKLIAEAWDTG---GLYQVGIFPHWGIWSEWN---GKYRDIVRQFIKGT-------------DGFAGAFAECL 421 (691)
Q Consensus 361 ~dp~~~~~~liaE~w~~~---~~~~~~~fp~~g~~~~wn---~~f~d~~r~~~~g~-------------~~~~~~~~~~l 421 (691)
.+| +++||||.|+.. .......++. .+..|+ +.|+|.+|++++|. .+....+...+
T Consensus 662 ~dP---~~~liGE~W~~~~g~~~~~~~~~~~--~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i 736 (1111)
T TIGR02102 662 INP---NIIMIGEGWRTYAGDEGDPVQAADQ--DWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNI 736 (1111)
T ss_pred hCc---CEEEEEecccccCCCCcccccccch--hhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHHHHHHhh
Confidence 455 999999999862 1122222221 223333 57777777777753 12234566777
Q ss_pred cCCCccccCCCCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHH
Q 005552 422 CGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRN 501 (691)
Q Consensus 422 ~g~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~ 501 (691)
.+++..|. ...|.++|||++|||++||+|+++++.+||.++++.. ....++.|+
T Consensus 737 ~g~~~~~~--~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~------------------------~~~~~r~rl 790 (1111)
T TIGR02102 737 KAQPHNFE--ADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQ------------------------EEIHRRIRL 790 (1111)
T ss_pred cCCccccc--cCCcccEEEEEecCCCCchHhhhhhccccCcccccch------------------------HHHHHHHHH
Confidence 77765442 3578999999999999999999999988887766521 112456778
Q ss_pred HHHHHHhcCCceeEecCCccccCCCCCC----------------------------------CCCCCCCCccccccCccc
Q 005552 502 FFLCLMVSQGVPMISMGDEYGHTKGGNN----------------------------------NTYCHDNDINYFRWDKKE 547 (691)
Q Consensus 502 a~a~lltspGiP~iy~G~E~g~~~~g~~----------------------------------n~y~~~~~~~~~~W~~~~ 547 (691)
+++++||+||+||||+||||+++|.|++ |||++++.+|+++|++.+
T Consensus 791 a~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~ 870 (1111)
T TIGR02102 791 GNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKAT 870 (1111)
T ss_pred HHHHHHHhCcHhhhhcchhhhcccCCCcccccccccccccccccccccccccccccccccccccccCCCccceecccccc
Confidence 8899999999999999999999999984 455557889999999886
Q ss_pred cc-----chhHHHHHHHHHHHHHhCccCCCCCCCCC-cceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEeCCCC
Q 005552 548 ES-----KSDFFRFCCLLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHL 621 (691)
Q Consensus 548 ~~-----~~~l~~f~r~Li~LRk~~paL~~g~~~~~-~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N~~~~ 621 (691)
.. ..++++|+|.||+|||++|+|+.+++..+ ..|.|+... ..++|...+.+++|+..+..++.++|++|.+.+
T Consensus 871 ~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~~~i~~~v~~~~~~-g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~~ 949 (1111)
T TIGR02102 871 DADAYPINNKTRDYTAGLIELRRSTDAFRLGSKALVDRKVTLITIP-GQNEIEEEDLVVAYQIVATNGDIYAVFVNADDK 949 (1111)
T ss_pred cccccchhHHHHHHHHHHHHHHhcCccccccchhhhcCcEEEECCC-CCcccccCCcEEEEEEecCCCCeEEEEECCCCC
Confidence 43 15899999999999999999999987654 457786432 123455567999999876545689999999999
Q ss_pred cEEEEcCCC-C-CCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEEecC
Q 005552 622 PVIISLPKR-P-GYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSP 687 (691)
Q Consensus 622 ~~~v~lp~~-~-g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~~~~ 687 (691)
++++.||.. + ...|.++++...+....+.... ++ ......++|+|+|++||....
T Consensus 950 ~~~~~lp~~~~~~~~~~v~~~~~~~g~~~~~~~~---------~~--~~~~~~~~v~~~s~~V~~~~~ 1006 (1111)
T TIGR02102 950 ARTLTLGEDYAHLTVGEVVVDAEQAGVTGIAEPK---------GV--ELTAEGLKLDPLTAAVVRVGG 1006 (1111)
T ss_pred CEEEECCCCcccccceEEEEcccccCcccccccc---------cc--cccCCeEEEcCcEEEEEEecc
Confidence 999999973 1 2379999987543211111000 00 023568999999999999864
No 7
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.2e-67 Score=605.73 Aligned_cols=510 Identities=22% Similarity=0.343 Sum_probs=352.4
Q ss_pred cccccccccCCCCCCCCeEEeCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCc
Q 005552 83 PQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDM 162 (691)
Q Consensus 83 ~~~~~~~~~~g~~~~lGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~ 162 (691)
..|+..+.+.| +|||++.+++|+|+||||+|++|+|+||+.. +...+...++|+ ..+|||+++++++++|.
T Consensus 203 ~~lD~~y~y~~---~LGA~~~~~g~~F~VWAPtA~~V~L~lyd~~--~~~~~~~~~~m~----~~~GVWsv~v~~~~~G~ 273 (970)
T PLN02877 203 GVLDDLFAYDG---PLGAHFSKDAVSLYLWAPTAQAVSLCLYDDP--RGKEPLEIVQLK----ESNGVWSVEGPKSWEGC 273 (970)
T ss_pred hhhhhhccCCC---CCcceEecCCEEEEEECCCCCEEEEEEecCC--CCccceEEeccc----CCCCEEEEEeccCCCCC
Confidence 36777777665 8999999999999999999999999998743 222334567774 57899999999999999
Q ss_pred eEEEEEcCccCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCC----CCCCCCCCC---CCCCCC
Q 005552 163 LYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTP----EDEFDWEGD---LPLKYP 235 (691)
Q Consensus 163 ~Y~y~i~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~W~~~---~~~~~~ 235 (691)
+|+|+|+. +.|..|.. ..+.++||||+++..++.++ ++++. ..+.+|+.. .++..+
T Consensus 274 ~Y~Y~V~v-~~p~~g~~--~~~~v~DPYA~als~ng~~S--------------~vvDl~~~~~~p~gW~~~~~~~p~~~~ 336 (970)
T PLN02877 274 YYVYEVSV-YHPSTGKV--ETCYANDPYARGLSADGRRT--------------LLVDLDSDDLKPEGWDNLAKEKPCLLS 336 (970)
T ss_pred eeEEEEee-cccCCCcc--cccccCCccceEEecCCCce--------------EEECCccccCCChhhhhcccccCccCC
Confidence 99999983 44555543 34578999999998665443 33331 135678752 233456
Q ss_pred CCCceEEEEeecCccccC-CCCCCCCcchhccccc----cccc-------------------------------------
Q 005552 236 QRDLIIYEVHVRGFTRHE-SSKTEHPGTYLGVVEK----LDHL------------------------------------- 273 (691)
Q Consensus 236 ~~~~vIYElHVr~Ft~~~-~~~~~~~Gtf~g~~ek----LdyL------------------------------------- 273 (691)
++++||||+|||+||.+. +.+.+++|||+|++|+ |+||
T Consensus 337 ~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l 416 (970)
T PLN02877 337 FSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKEL 416 (970)
T ss_pred CcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchh
Confidence 789999999999999854 4456789999999986 3222
Q ss_pred --------------------------------------------------------------------------------
Q 005552 274 -------------------------------------------------------------------------------- 273 (691)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (691)
T Consensus 417 ~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~ 496 (970)
T PLN02877 417 EKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGP 496 (970)
T ss_pred ccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCC
Confidence
Q ss_pred -----------CCcccc--------ccCccCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccc
Q 005552 274 -----------KGEFYN--------YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNV 334 (691)
Q Consensus 274 -----------~g~y~n--------~sg~g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~ 334 (691)
++.||. .++|+++++.+++|||++|+|+++||++||||||||||+|++++.+. |..+
T Consensus 497 ~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~t--m~~~-- 572 (970)
T PLN02877 497 FDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRT--MVRA-- 572 (970)
T ss_pred cchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHH--HHHH--
Confidence 122321 13678888999999999999999999999999999999999997652 2211
Q ss_pred cCcccccccccCCCCCCChhHHHHHhcC--CC-CCCcEEEeecCCCCCccc------cc--CCCCCcccceecCcccHHH
Q 005552 335 YGIPIEGDLLTTGTPLRSPPLIDLISND--PI-LRGVKLIAEAWDTGGLYQ------VG--IFPHWGIWSEWNGKYRDIV 403 (691)
Q Consensus 335 ~g~~~~~~~~~~g~~~~~~~~~~~i~~d--p~-~~~~~liaE~w~~~~~~~------~~--~fp~~g~~~~wn~~f~d~~ 403 (691)
...++.|..+ .+ .++++++||+|+.+.... .. +.... ..+.||+.+||++
T Consensus 573 ------------------~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~-gIg~FnD~~RDav 633 (970)
T PLN02877 573 ------------------KDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGT-GIGSFNDRIRDAM 633 (970)
T ss_pred ------------------HHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCC-ceEEecchhHHHH
Confidence 0122333211 11 258999999998774211 11 11111 3567777777777
Q ss_pred HH---H-HcCCCCcHH--------------------------HHHHHHcCCCcc------------------ccC----C
Q 005552 404 RQ---F-IKGTDGFAG--------------------------AFAECLCGSPNL------------------YQG----G 431 (691)
Q Consensus 404 r~---~-~~g~~~~~~--------------------------~~~~~l~g~~~~------------------~~~----~ 431 (691)
|. | -....|+.. .+...|.|+..- |.+ .
T Consensus 634 kGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~y 713 (970)
T PLN02877 634 LGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAY 713 (970)
T ss_pred cCCCCCCCcCCCceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCccccc
Confidence 63 1 000111111 112234443221 221 1
Q ss_pred CCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCC
Q 005552 432 GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQG 511 (691)
Q Consensus 432 ~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspG 511 (691)
..+|.++|||+++|||.||+|++.+....+. ..+.|.++.+++++++||+||
T Consensus 714 a~~P~q~InYvs~HDN~TL~D~l~~~~~~~~----------------------------s~~~r~r~~~la~aiv~lsQG 765 (970)
T PLN02877 714 ASSPTETINYVSAHDNETLFDIISLKTPMEI----------------------------SVDERCRINHLATSIIALSQG 765 (970)
T ss_pred ccCHHHheeeeeccCCchHHHHHHhhcCCCC----------------------------CHHHHHHHHHHHHHHHHHhCh
Confidence 2478999999999999999999986421100 013467888999999999999
Q ss_pred ceeEecCCccccCCCCCCCCCCCCCCccccccCcc-----------ccc----------------------chhHHHHHH
Q 005552 512 VPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKK-----------EES----------------------KSDFFRFCC 558 (691)
Q Consensus 512 iP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~-----------~~~----------------------~~~l~~f~r 558 (691)
||||++|+||+|+|.++.|||++++.+|++||+.. +++ -....++||
T Consensus 766 ipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~ 845 (970)
T PLN02877 766 IPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFL 845 (970)
T ss_pred hhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999983 221 045689999
Q ss_pred HHHHHHHhCccCCCCCCCCC-cceEeccCCCCCCCCCCCCcEEEEEEEccC------------CCEEEEEEeCCCCcEEE
Q 005552 559 LLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRFVAFTLIDSV------------KGEIYVAFNASHLPVII 625 (691)
Q Consensus 559 ~Li~LRk~~paL~~g~~~~~-~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~------------~~~llVv~N~~~~~~~v 625 (691)
.||+|||++|+|+.++...+ +++.++... -....+||+|+..+.. .+.++||+|.+++.+++
T Consensus 846 ~Li~lRks~plFrl~t~~~I~~~v~F~~~g-----~~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~~~~ 920 (970)
T PLN02877 846 DLLRIRYSSPLFRLRTANAIQERVRFHNTG-----PSSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARPTEVSF 920 (970)
T ss_pred HHHHHHhcCcccCCCCHHHHHhhcEEeccC-----CCcCCCEEEEEEcCCCCccccccccccccCcEEEEEcCCCccEEE
Confidence 99999999999999886643 345555321 1234689999997642 14699999999999999
Q ss_pred EcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEEec
Q 005552 626 SLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLS 686 (691)
Q Consensus 626 ~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~~~ 686 (691)
++|...+ |..-+..-.....|..... +. +. ....+++|||+|++||++.
T Consensus 921 ~~~~~~~--~~~~l~~v~~~~~d~~~~~-----~~---~~--~~~~~~tvp~~t~aVfv~~ 969 (970)
T PLN02877 921 ESPALKG--RTLELHPVQVMSADEVVKK-----SV---YE--ASSGVFTVPPRTTAVFVEH 969 (970)
T ss_pred ecccccc--cceeecccccccccceecc-----ce---ee--ccCCeEEecCceEEEEEee
Confidence 9997532 3222221111111111000 00 00 3357899999999999973
No 8
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=3.1e-67 Score=605.07 Aligned_cols=506 Identities=22% Similarity=0.361 Sum_probs=358.2
Q ss_pred cccccccccCCCCCCCCeEEeCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCc
Q 005552 83 PQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDM 162 (691)
Q Consensus 83 ~~~~~~~~~~g~~~~lGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~ 162 (691)
..|+..+.+.|...+|||++.++||+|+||||+|++|+|+||+. +++ ....++|.+ ...+|||+++++++++|.
T Consensus 113 ~~lD~~y~y~~~~~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~-~~~---~~~~~~M~~--~~~~GVWsv~v~g~~~G~ 186 (898)
T TIGR02103 113 GVLDALYAYAGPALSLGATLTDSGVTFRLWAPTAQQVKLHIYSA-SKK---VETTLPMTR--DSTSGVWSAEGGSSWKGA 186 (898)
T ss_pred hhhhHHhhcCCCCCCCCcEEeCCcEEEEEECCCCCEEEEEEEcC-CCC---ccceEeCcc--CCCCCEEEEEECcCCCCC
Confidence 47888888888777899999999999999999999999999874 332 235788863 236799999999999999
Q ss_pred eEEEEEcCccCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCC----CCCCCCCCCCCCC---CC
Q 005552 163 LYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTP----EDEFDWEGDLPLK---YP 235 (691)
Q Consensus 163 ~Y~y~i~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~W~~~~~~~---~~ 235 (691)
+|+|+|+. +.|..|.. ++..++||||+++..++.++ +|++. ..+.+|..+..+. .+
T Consensus 187 ~Y~Y~V~v-~~p~~G~v--~~~~v~DPYA~als~n~~~S--------------~VvDl~~~~~~p~~W~~~~~p~p~~~~ 249 (898)
T TIGR02103 187 YYRYEVTV-YHPSTGKV--ETYLVTDPYSVSLSANSEYS--------------QVVDLNDPALKPEGWDALAMPKPQLAS 249 (898)
T ss_pred EeEEEEEE-ecCCCCeE--CCeEEeCcCcceEcCCCCCe--------------EEeCCccccCCCcchhhcccccCCcCC
Confidence 99999983 44445542 34679999999997665443 34432 1356787665322 36
Q ss_pred CCCceEEEEeecCccccCCCCC-CCCcchhccccc-------cccc----------------------------------
Q 005552 236 QRDLIIYEVHVRGFTRHESSKT-EHPGTYLGVVEK-------LDHL---------------------------------- 273 (691)
Q Consensus 236 ~~~~vIYElHVr~Ft~~~~~~~-~~~Gtf~g~~ek-------LdyL---------------------------------- 273 (691)
++++||||+|||+||.+++++. +++|||+|++|+ |+||
T Consensus 250 ~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~ 329 (898)
T TIGR02103 250 FADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFS 329 (898)
T ss_pred CcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchh
Confidence 7999999999999998655543 689999999885 2211
Q ss_pred --------------------------------------------------------------------------------
Q 005552 274 -------------------------------------------------------------------------------- 273 (691)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (691)
T Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~m 409 (898)
T TIGR02103 330 KLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREM 409 (898)
T ss_pred hhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHH
Confidence
Q ss_pred -----------------------------------CCccc---------cccCccCcCCCCCHHHHHHHHHHHHHHHHhc
Q 005552 274 -----------------------------------KGEFY---------NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEM 309 (691)
Q Consensus 274 -----------------------------------~g~y~---------n~sg~g~dln~~~p~vr~~iid~l~yWl~ey 309 (691)
++.|+ ++++| +++|++|||||++|+|+++||++||
T Consensus 410 V~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~-~d~a~e~~~Vrk~iiDsl~~W~~ey 488 (898)
T TIGR02103 410 VQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCC-SNTATEHRMMAKLIVDSLVVWAKDY 488 (898)
T ss_pred HHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCC-cCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 11121 22333 5689999999999999999999999
Q ss_pred cccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcCCCCCCcEEEeecCCCCCccc------c
Q 005552 310 HVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQ------V 383 (691)
Q Consensus 310 gVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~dp~~~~~~liaE~w~~~~~~~------~ 383 (691)
||||||||+|++++.+ +|.. +.+.+.+ +.++++++||.|+.+.... .
T Consensus 489 ~VDGFRfDlm~~~~~~--f~~~-----------------------~~~~l~~--i~pdi~l~GEgW~~~~~~~~~~~~~a 541 (898)
T TIGR02103 489 KVDGFRFDLMGHHPKA--QMLA-----------------------AREAIKA--LTPEIYFYGEGWDFGEVANNRRFINA 541 (898)
T ss_pred CCCEEEEechhhCCHH--HHHH-----------------------HHHHHHH--hCCCEEEEecCCCcccccchhhhhhh
Confidence 9999999999999754 4443 2333322 3449999999998763211 1
Q ss_pred c--CCCCCcccceecCcccHHHHHH--HcC------CCCcHH-------------------------HHHHHHcCCCc--
Q 005552 384 G--IFPHWGIWSEWNGKYRDIVRQF--IKG------TDGFAG-------------------------AFAECLCGSPN-- 426 (691)
Q Consensus 384 ~--~fp~~g~~~~wn~~f~d~~r~~--~~g------~~~~~~-------------------------~~~~~l~g~~~-- 426 (691)
. +.... ..+.||+.+||++|.- +.+ ..|+.. .+...|.|+..
T Consensus 542 ~~~n~~~~-~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~ 620 (898)
T TIGR02103 542 TQLNLAGT-GIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDF 620 (898)
T ss_pred hccccCCC-CeEEeccchhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccc
Confidence 1 11111 3466777777776641 111 111110 12223444321
Q ss_pred ---------------ccc----CCCCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchh
Q 005552 427 ---------------LYQ----GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFA 487 (691)
Q Consensus 427 ---------------~~~----~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~ 487 (691)
.|. +...+|.++|||+++|||.||+|++.++...+ .
T Consensus 621 ~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~----~--------------------- 675 (898)
T TIGR02103 621 VLTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAE----T--------------------- 675 (898)
T ss_pred cccccccccccccccccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCC----C---------------------
Confidence 111 11257889999999999999999998642110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCccccc------------------
Q 005552 488 NILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEES------------------ 549 (691)
Q Consensus 488 ~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~------------------ 549 (691)
..+.|.++.+++++++||+||||||++|+||+|+|.+..|+|++++.+|+++|+.....
T Consensus 676 ---~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~ 752 (898)
T TIGR02103 676 ---PSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPII 752 (898)
T ss_pred ---CHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCCCCcCchhhheecccccccccccCCCcccccccchhhh
Confidence 01346778899999999999999999999999999999999999999999999876431
Q ss_pred ---------------chhHHHHHHHHHHHHHhCccCCCCCCCCC-cceEeccCCCCCCCCCCCCcEEEEEEEccC-----
Q 005552 550 ---------------KSDFFRFCCLLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRFVAFTLIDSV----- 608 (691)
Q Consensus 550 ---------------~~~l~~f~r~Li~LRk~~paL~~g~~~~~-~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~----- 608 (691)
...+.+|||.||+|||++|+|+.++...+ +.|.++... -+...++|+|+..+..
T Consensus 753 ~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~v~F~~~g-----~~~~~g~i~~~i~d~~~~~~~ 827 (898)
T TIGR02103 753 APVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKRVDFRNTG-----PDQIPGLIVMSIDDGGIQAGA 827 (898)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhheEEeccC-----CcCCCCEEEEEEcCCcccccc
Confidence 25789999999999999999999886643 345554321 1234689999997641
Q ss_pred -----CCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEE
Q 005552 609 -----KGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIIL 683 (691)
Q Consensus 609 -----~~~llVv~N~~~~~~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl 683 (691)
.+.++||+|.+++.+++ +|...+..|+++..-.. ..+.. +. ... + .....+++|||+|++||
T Consensus 828 ~~d~~~~~ivVv~Na~~~~~~~-~~~~~~~~~~l~~~~~~--~~d~~---v~--~~~---~--~~~~~~~~vp~~s~~V~ 894 (898)
T TIGR02103 828 SLDPRYDGIVVIFNARPEEVTL-SPDFAGTGLELHAVQQA--SGDES---VA--KSV---Y--SAANGTFTVPAWTTAVF 894 (898)
T ss_pred ccccccCeEEEEEcCCCccEEE-ecccCCCcEEEEecccc--cCccc---cc--cce---e--eccCCEEEEcCcEEEEE
Confidence 25799999999999998 87765557988644321 11110 00 000 0 02357899999999999
Q ss_pred Eec
Q 005552 684 LLS 686 (691)
Q Consensus 684 ~~~ 686 (691)
++.
T Consensus 895 ~~~ 897 (898)
T TIGR02103 895 VLP 897 (898)
T ss_pred Eec
Confidence 974
No 9
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.8e-63 Score=560.49 Aligned_cols=506 Identities=17% Similarity=0.258 Sum_probs=352.4
Q ss_pred ccccCCCCC----CCCeEEe----CCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCC
Q 005552 88 FQVSKGYPT----PFGATLR----DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDF 159 (691)
Q Consensus 88 ~~~~~g~~~----~lGa~~~----~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~ 159 (691)
+.+.+|... .||||.. .+||+|+||||+|++|+|+ ++|++|+. ..+||. ++.+|||+++||++.
T Consensus 113 ~~~~~g~~~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVv-GDFN~Wdg----~~~pM~---~~~~GVWelfipg~~ 184 (730)
T PRK12568 113 LQIAAGDGQALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVV-GDFNGWDV----RRHPMR---QRIGGFWELFLPRVE 184 (730)
T ss_pred HHHhCCchhhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEE-EecCCCCc----cceecc---cCCCCEEEEEECCCC
Confidence 456667544 5999975 4589999999999999998 79999964 467885 357899999999999
Q ss_pred CCceEEEEEcCccCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCCCCCCCCCCCCCC-----C
Q 005552 160 KDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK-----Y 234 (691)
Q Consensus 160 ~g~~Y~y~i~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~-----~ 234 (691)
+|.+|+|+|.+. +|.. ..++||||++++.+ |..+++|.+ ..+|.|+++.|.. .
T Consensus 185 ~G~~YKYeI~~~----~G~~----~~k~DPYA~~~e~~-------------p~~asvV~~-~~~~~W~d~~W~~~r~~~~ 242 (730)
T PRK12568 185 AGARYKYAITAA----DGRV----LLKADPVARQTELP-------------PATASVVPS-AAAFAWTDAAWMARRDPAA 242 (730)
T ss_pred CCCEEEEEEEcC----CCeE----eecCCCcceEeecC-------------CCCCeEEcC-CCCCCCCChhhhhcccccC
Confidence 999999999864 3432 35899999998654 234567765 3579999886532 3
Q ss_pred CCCCceEEEEeecCccccCCCCCCCCcchhccccc-cccc----------------------------------------
Q 005552 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEK-LDHL---------------------------------------- 273 (691)
Q Consensus 235 ~~~~~vIYElHVr~Ft~~~~~~~~~~Gtf~g~~ek-LdyL---------------------------------------- 273 (691)
+.++++|||+|||+|+.+.+.+ .++|++++++ ||||
T Consensus 243 ~~~~~~IYEvHvgsf~~~~~~~---~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~ 319 (730)
T PRK12568 243 VPAPLSIYEVHAASWRRDGHNQ---PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPD 319 (730)
T ss_pred CCCCcEEEEEEhHHhcCCCCCC---CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHH
Confidence 4689999999999999864332 5899999998 5999
Q ss_pred -----------------------------------CCc-cccc--------cCccC-cCCCCCHHHHHHHHHHHHHHHHh
Q 005552 274 -----------------------------------KGE-FYNY--------SGCGN-TFNCNHPVVRQFIVDCLRYWVTE 308 (691)
Q Consensus 274 -----------------------------------~g~-y~n~--------sg~g~-dln~~~p~vr~~iid~l~yWl~e 308 (691)
+|. +|.. ..|+. .||+++|+||+||+++++||++|
T Consensus 320 dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~e 399 (730)
T PRK12568 320 GFAQFVDACHRAGIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEH 399 (730)
T ss_pred HHHHHHHHHHHCCCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHH
Confidence 111 1110 12322 47999999999999999999999
Q ss_pred ccccEEEEeccccccc-----cCcccccccccCcccccccccCCCCCCChhHHHHHhc--CCCCCCcEEEeecCCCC-Cc
Q 005552 309 MHVDGFRFDLASIMTR-----GSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWDTG-GL 380 (691)
Q Consensus 309 ygVDGFRfD~~~~i~~-----~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--dp~~~~~~liaE~w~~~-~~ 380 (691)
|||||||||++.+|.. ....|.+ +.+|. ...+....|++.+.. ....|++++|||.+... +.
T Consensus 400 yhIDG~R~DAva~mly~d~~r~~g~w~p-n~~gg---------~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~v 469 (730)
T PRK12568 400 YHLDGLRVDAVASMLYRDYGRAEGEWVP-NAHGG---------RENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGV 469 (730)
T ss_pred hCceEEEEcCHhHhhhhccccccccccc-cccCC---------ccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccc
Confidence 9999999999887742 1223322 22211 111222234443311 12346999999986543 11
Q ss_pred ccccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCCCCchhhhhhhcccc
Q 005552 381 YQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKH 460 (691)
Q Consensus 381 ~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~ 460 (691)
.......++||+++||+.|++.+.++++.++.........|+.+. .|. ...+.| +..|||++.-. +-+.-
T Consensus 470 t~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~-~y~----~~e~fv-lp~SHDEvvhg-k~sl~--- 539 (730)
T PRK12568 470 TAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGL-VYA----FSERFV-LPLSHDEVVHG-TGGLL--- 539 (730)
T ss_pred cccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhh-hhh----hhccEe-ccCCCcccccC-chhhh---
Confidence 111112346899999999999999999987655544444444332 221 011223 66899997311 00000
Q ss_pred ccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCCCCCCCCCCCccc
Q 005552 461 NLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINY 540 (691)
Q Consensus 461 n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~ 540 (691)
+.+.|+. ..+.+.+|++++++|+.||+||||||+|||+.+.++.+ ..
T Consensus 540 ~kmpGd~-------------------------~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~--------~~ 586 (730)
T PRK12568 540 GQMPGDD-------------------------WRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHD--------QS 586 (730)
T ss_pred hcCCCCH-------------------------HHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCC--------CC
Confidence 1112221 23577889999999999999999999999998877544 56
Q ss_pred cccCcccc-cchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccC--CCEEEEEEe
Q 005552 541 FRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSV--KGEIYVAFN 617 (691)
Q Consensus 541 ~~W~~~~~-~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~--~~~llVv~N 617 (691)
++|...+. .++.+.+|+|+|++||+++|+|...++.. ..++|.... +.+++|++|.|...+ ++.++||+|
T Consensus 587 ldW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~~d~~~-~gf~wi~~~------d~~~sv~af~R~~~~~~~~~v~vV~N 659 (730)
T PRK12568 587 LDWHLLDGARHRGMQQLVGDLNAALRRTPALYRGTHRA-DGFDWSVAD------DARNSVLAFIRHDPDGGGVPLLAVSN 659 (730)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHhChhhhcccCCC-CCeEEEeCC------CCCCcEEEEEEecCCCCCCeEEEEEC
Confidence 99998764 35789999999999999999999888765 678887542 456789999998753 346999999
Q ss_pred CCCCcEE-EEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEEec
Q 005552 618 ASHLPVI-ISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLS 686 (691)
Q Consensus 618 ~~~~~~~-v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~~~ 686 (691)
|++.++. +.|..+..+.|++++||+...+++..........+...+..+...+..++|||++++||++.
T Consensus 660 ft~~~~~~Y~ig~p~~G~~~eilNsd~~~ygG~~~~n~~~~~~~~~~~~g~~~s~~i~lppl~~~~~~~~ 729 (730)
T PRK12568 660 LTPQPHHDYRVGVPRAGGWREILNTDSAHYGGSNLGNSGRLATEPTGMHGHAQSLRLTLPPLATIYLQAE 729 (730)
T ss_pred CCCCCccCeEECCCCCCeEEEEEcCchhhhCCCCcCCCCceeecccccCCCccEEEEEeCCCEEEEEEEC
Confidence 9997653 44433335699999999987655542211111122222344456788999999999999875
No 10
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=8.3e-62 Score=551.17 Aligned_cols=499 Identities=17% Similarity=0.237 Sum_probs=335.2
Q ss_pred CCCeEEeCC----cEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCcc
Q 005552 97 PFGATLRDG----GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (691)
Q Consensus 97 ~lGa~~~~~----g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~~ 172 (691)
.||||.... ||+||||||+|++|+|+ +++++|+. ..+||.+ ..+|+|+++||++.+|+.|+|+|++.
T Consensus 26 ~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lv-gdfn~w~~----~~~pM~~---~~~GvW~~~vpg~~~g~~Yky~I~~~- 96 (639)
T PRK14706 26 LLGAHPATEGGVEGVRFAVWAPGAQHVSVV-GDFNDWNG----FDHPMQR---LDFGFWGAFVPGARPGQRYKFRVTGA- 96 (639)
T ss_pred hcCccCccCCCcccEEEEEECCCCCEEEEE-EecCCccc----ccccccc---cCCCEEEEEECCCCCCCEEEEEEECC-
Confidence 799997653 79999999999999999 68999864 3467753 46799999999999999999999864
Q ss_pred CCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCC--C--CCCceEEEEeecC
Q 005552 173 SPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKY--P--QRDLIIYEVHVRG 248 (691)
Q Consensus 173 ~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~~--~--~~~~vIYElHVr~ 248 (691)
.|.. ..++||||+++..+. ..+|+|.+ ..|.|+++.|+.. + .++++|||+|||+
T Consensus 97 ---~g~~----~~~~DPYa~~~~~~~-------------~~~svv~~--~~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~ 154 (639)
T PRK14706 97 ---AGQT----VDKMDPYGSFFEVRP-------------NTASIIWE--DRFEWTDTRWMSSRTAGFDQPISIYEVHVGS 154 (639)
T ss_pred ---CCCE----EeccCcceEEEecCC-------------CCceEECC--CCCCCCCcccccccCCccCCCcEEEEEehhh
Confidence 3332 357999999986542 23467665 3699998887532 1 2469999999999
Q ss_pred ccccCCCCCCCCcchhcccccc-ccc------------------------------------------------------
Q 005552 249 FTRHESSKTEHPGTYLGVVEKL-DHL------------------------------------------------------ 273 (691)
Q Consensus 249 Ft~~~~~~~~~~Gtf~g~~ekL-dyL------------------------------------------------------ 273 (691)
|+...+. ..|+|++++++| +||
T Consensus 155 f~~~~~g---~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi 231 (639)
T PRK14706 155 WARRDDG---WFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGI 231 (639)
T ss_pred cccCCCC---CccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCC
Confidence 9875322 258999999996 898
Q ss_pred ---------------------CC-ccc--cc------cCccC-cCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccc
Q 005552 274 ---------------------KG-EFY--NY------SGCGN-TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 322 (691)
Q Consensus 274 ---------------------~g-~y~--n~------sg~g~-dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i 322 (691)
+| .+| .. ..|+. .||+.+|+||+||+++++||++||||||||||++.+|
T Consensus 232 ~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ 311 (639)
T PRK14706 232 GVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASM 311 (639)
T ss_pred EEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehhe
Confidence 11 111 10 12332 4899999999999999999999999999999999887
Q ss_pred cccCcccccccccCcccccccccCCCCCCChhHHHHHhc--CCCCCCcEEEeecCCCC-CcccccCCCCCcccceecCcc
Q 005552 323 TRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKY 399 (691)
Q Consensus 323 ~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--dp~~~~~~liaE~w~~~-~~~~~~~fp~~g~~~~wn~~f 399 (691)
..-. ++.. .|.+........+....+++.+.. ....|++++|||.|... ++..... .++||+++||+.|
T Consensus 312 ly~d-~~~~------~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~-~G~gFD~~w~~~w 383 (639)
T PRK14706 312 LYLD-FSRT------EWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTP-YGLGFDYKWAMGW 383 (639)
T ss_pred eecc-cCcc------cccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccC-CCCccccEeccHH
Confidence 4211 1110 011111111112222334444321 11345899999998643 2211111 2578999999999
Q ss_pred cHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCc
Q 005552 400 RDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWN 479 (691)
Q Consensus 400 ~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~ 479 (691)
++.+..++..+..........++.+ .+|. .....| |++|||+.+....... ..+.|+.
T Consensus 384 ~~~~l~~~~~~~~~r~~~~~~lt~~-~~y~----~~e~~i-l~~SHDev~~~k~sl~----~k~~g~~------------ 441 (639)
T PRK14706 384 MNDTLAYFEQDPLWRKYHHHKLTFF-NVYR----TSENYV-LAISHDEVVHLKKSMV----MKMPGDW------------ 441 (639)
T ss_pred HHHHHHHhccCchhhhhchhccchh-hhhh----ccccEe-cCCCCccccCCccchH----hHcCCCH------------
Confidence 9998888765443322111112111 1121 111233 6799999874321110 1112211
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccc-cchhHHHHHH
Q 005552 480 CGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCC 558 (691)
Q Consensus 480 ~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~-~~~~l~~f~r 558 (691)
..+.+++|++++++||+||+||||||+|||+.+.++ ...+++|+..+. .+..+++|+|
T Consensus 442 -------------~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~--------~~~~l~W~l~~~~~~~~l~~~~k 500 (639)
T PRK14706 442 -------------YTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWN--------HDASLPWYLTDVPDHRGVMNLVR 500 (639)
T ss_pred -------------HHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCC--------cccCCCCcccCCHHHHHHHHHHH
Confidence 124577899999999999999999999999765432 346789997653 3467999999
Q ss_pred HHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccC-CCEEEEEEeCCCCcE-EEEcCCCCCCceE
Q 005552 559 LLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSV-KGEIYVAFNASHLPV-IISLPKRPGYRWE 636 (691)
Q Consensus 559 ~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~-~~~llVv~N~~~~~~-~v~lp~~~g~~w~ 636 (691)
+||+||+++|+|+.+++.. ..++|.... +.+++|++|.|...+ ++.++||+|+++... .+.|..+..+.|+
T Consensus 501 ~L~~L~k~~paL~~gd~~~-~~f~wi~~~------d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~~~y~ig~p~~g~~~ 573 (639)
T PRK14706 501 RLNQLYRERPDWHRGDKRE-EGLYWVSAD------DTDNSVYAYVRRDSESGAWSLAVANLTPVYREQYRIGVPQGGEYR 573 (639)
T ss_pred HHHHHHHhCHHHhhCCCCC-CCeEEEEee------cCCCCEEEEEEecCCCCeeEEEEEeCCCCCcCCeEECCCCCCeEE
Confidence 9999999999999988654 456665331 345789999998753 235999999999543 3444443456999
Q ss_pred EEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEEecCC
Q 005552 637 PLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSPD 688 (691)
Q Consensus 637 ~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~~~~~ 688 (691)
+++||+...++|....... ..+...+..+...+..++|||++++||++..+
T Consensus 574 ~i~nsd~~~~gG~g~~n~~-~~~~~~~~~g~~~si~i~lp~~~~~~~~~~~~ 624 (639)
T PRK14706 574 VLLSTDDGEYGGFGTQQPD-LMASQEGWHGQPHSLSLNLPPSSVLILEFVGD 624 (639)
T ss_pred EEEcCCccccCCCCCCCCc-eeccccccCCCccEEEEEeCCcEEEEEEECCC
Confidence 9999998776665332211 11111122334567889999999999998644
No 11
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-61 Score=526.33 Aligned_cols=518 Identities=31% Similarity=0.448 Sum_probs=397.7
Q ss_pred CCCCeEEeCCc-EEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCC--CCCceEEEEEcCcc
Q 005552 96 TPFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD--FKDMLYGYKFDGKF 172 (691)
Q Consensus 96 ~~lGa~~~~~g-~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~--~~g~~Y~y~i~g~~ 172 (691)
.+||+|...++ +.|+.|||.|.+|.|+ +++|+|+. ....|.+ +...|+|++++|.. ..+..+.|.+..
T Consensus 103 ~~~g~h~~~d~~v~~~ewaP~a~~~s~~-gd~n~W~~----~~~~~~~--k~~~g~w~i~l~~~~~~s~~v~H~s~~~-- 173 (757)
T KOG0470|consen 103 EPLGTHRTPDGRVDFTEWAPLAEAVSLI-GDFNNWNP----SSNELKP--KDDLGVWEIDLPPKVNGSGAVPHGSVSK-- 173 (757)
T ss_pred cccceeccCCCceeeeeecccccccccc-cccCCCCC----cccccCc--ccccceeEEecCcccCCCccccccceeE--
Confidence 37899998877 9999999999999999 89999975 2334432 56789999999843 444433332221
Q ss_pred CCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCCCCCCCCCCCCCC-CCCCCceEEEEeecCccc
Q 005552 173 SPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK-YPQRDLIIYEVHVRGFTR 251 (691)
Q Consensus 173 ~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~-~~~~~~vIYElHVr~Ft~ 251 (691)
....+||+..+.....|..-++.+++.+++.++.+++..+++|+.+..++ .|.++++|||+|||+||.
T Consensus 174 -----------~~~~~p~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~ 242 (757)
T KOG0470|consen 174 -----------IHLSTPYGETCKRIPAWATYVDQEGEGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSS 242 (757)
T ss_pred -----------EEeecCCcceeeccChHhhcccCCCcccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccC
Confidence 12334444333333333322333334567778888877789998887655 455599999999999999
Q ss_pred cCCCCCCCCcchhccccc-cccc---------------------------------------------------------
Q 005552 252 HESSKTEHPGTYLGVVEK-LDHL--------------------------------------------------------- 273 (691)
Q Consensus 252 ~~~~~~~~~Gtf~g~~ek-LdyL--------------------------------------------------------- 273 (691)
++++.....| |+|+++| |+||
T Consensus 243 ~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aH 321 (757)
T KOG0470|consen 243 HESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAH 321 (757)
T ss_pred CCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHh
Confidence 8877666444 9999999 9998
Q ss_pred ------------------------------CCccc-------cccCccCcCCCCCHHHHHHHHHHHHHHHHhccccEEEE
Q 005552 274 ------------------------------KGEFY-------NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRF 316 (691)
Q Consensus 274 ------------------------------~g~y~-------n~sg~g~dln~~~p~vr~~iid~l~yWl~eygVDGFRf 316 (691)
++.|| +.++|++.|||++|+|++||+++|+||++|||||||||
T Consensus 322 s~GI~VlLDVV~sHaa~n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRF 401 (757)
T KOG0470|consen 322 SLGIEVLLDVVHSHAAKNSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRF 401 (757)
T ss_pred hCCcEEehhhhhhhcccCcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEE
Confidence 24454 56789999999999999999999999999999999999
Q ss_pred eccccccccCcccccccccCcccccccccCCCCCCChhHHH-HHhcCCCCCCcE-EEeecCCCCCcccccCCCCCcccce
Q 005552 317 DLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLID-LISNDPILRGVK-LIAEAWDTGGLYQVGIFPHWGIWSE 394 (691)
Q Consensus 317 D~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~i~~dp~~~~~~-liaE~w~~~~~~~~~~fp~~g~~~~ 394 (691)
|++++|.+.++.|..- ++....+.-...|+++...++.. +|++|+++.... +|++.|+.++++..+.+|.+..+.+
T Consensus 402 D~~ssm~~~~~g~~~~--f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~ 479 (757)
T KOG0470|consen 402 DLVSSMLYTHHGNAAG--FDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAG 479 (757)
T ss_pred cchhhhhhhccccccc--cCCcchhhhccCCCcccccHHHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccc
Confidence 9999999988777642 22222222223455677777888 889999888888 9999999999999999999999999
Q ss_pred ecCcccHHHHHHHcCCCCcHH-HHHHHHcCCCccccCCCCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCC
Q 005552 395 WNGKYRDIVRQFIKGTDGFAG-AFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGET 473 (691)
Q Consensus 395 wn~~f~d~~r~~~~g~~~~~~-~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~ 473 (691)
||..|+.+++.+.++...... .++++++|+...+..+.+.|+.++||+++||++.+.|+++++.| +.+
T Consensus 480 ~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq~~v~d~~T~af~-----------~l~ 548 (757)
T KOG0470|consen 480 FDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNRRYPEKSVNYAESHDQALVGDLVTIAFK-----------WLM 548 (757)
T ss_pred cchhhhHHhhhHHHHHHHhccCchhheeccCcceeeeccccccceeeeeeccCCccccceeeecch-----------hhc
Confidence 999999999999988765544 57889999988888888899999999999999999998887553 345
Q ss_pred CCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccccchhH
Q 005552 474 HNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDF 553 (691)
Q Consensus 474 ~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l 553 (691)
++.+|+|+.++......+++.+..++++-+..+++++|+||+|||+|||+++.++.+.|+.+...+..+|...+....++
T Consensus 549 d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~r~~~f~~~~~~~ 628 (757)
T KOG0470|consen 549 DETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYARRKRFDLADSDL 628 (757)
T ss_pred chhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCccccCCCcccCCccccccCccccccccchh
Confidence 67799999999999888888888777777778889999999999999999999999999999888888886555544889
Q ss_pred HHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEE---------EccC-CCEEEEEEeCCCCcE
Q 005552 554 FRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTL---------IDSV-KGEIYVAFNASHLPV 623 (691)
Q Consensus 554 ~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r---------~~~~-~~~llVv~N~~~~~~ 623 (691)
++|.+.|+.+++++..|..........++|+... .+.+.+++|+| .... ..++.|.+|......
T Consensus 629 ~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k------~e~~~~i~fer~~~~~vfn~h~~~s~~d~~vg~n~~~~~~ 702 (757)
T KOG0470|consen 629 LRYRRQLNSFDREMNLLEERNGFTTSELQYISLK------HEADEVIVFERGPLLFVFNFHDSNSYIDYRVGFNAPGKYT 702 (757)
T ss_pred hhhhhhhhhhhhHHHHHHHhcccccccccccccc------chhhheeeeccCCeEEEEEecCCCCCceeEEEecCCCceE
Confidence 9999999999999998877766665677777543 23344555554 3322 245666666666655
Q ss_pred EEEcCCCC-CCceEEEecCCCCCCCCCcCCC
Q 005552 624 IISLPKRP-GYRWEPLVDTSKPEPFDFLSSD 653 (691)
Q Consensus 624 ~v~lp~~~-g~~w~~l~~t~~~~~~~~~~~~ 653 (691)
.+-+|..+ ++.|..|.+|....+.++...+
T Consensus 703 iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g 733 (757)
T KOG0470|consen 703 IVLNSDRPKGGGWNRLDDTALFFPYDFRSEG 733 (757)
T ss_pred EEECCCCCCCCCccccccccccCccccccCC
Confidence 56666654 6678888777776666665444
No 12
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.4e-60 Score=562.51 Aligned_cols=501 Identities=18% Similarity=0.245 Sum_probs=347.3
Q ss_pred ccccCCCCC----CCCeEEe--------CCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEE
Q 005552 88 FQVSKGYPT----PFGATLR--------DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFL 155 (691)
Q Consensus 88 ~~~~~g~~~----~lGa~~~--------~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v 155 (691)
+.+.+|... .||||.. ..||+|+||||+|++|+|+ ++||+|+. ...+|.+ ...+|||+++|
T Consensus 609 ~lf~~g~~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vv-gdFN~w~~----~~~~m~~--~~~~GvW~~fi 681 (1224)
T PRK14705 609 HLIGEGRHEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVK-GDFNGWDG----REHSMRS--LGSSGVWELFI 681 (1224)
T ss_pred HHHhCCchhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEE-EEecCCCC----CcccceE--CCCCCEEEEEE
Confidence 455666554 4999973 2489999999999999999 78999975 3457753 24679999999
Q ss_pred cCCCCCceEEEEEcCccCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCC-
Q 005552 156 KGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKY- 234 (691)
Q Consensus 156 ~g~~~g~~Y~y~i~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~~- 234 (691)
|++.+|+.|+|+|.+. .|.. ..+.||||+++..+ |..+|+|++. .|.|++..|...
T Consensus 682 pg~~~G~~Yky~i~~~----~g~~----~~k~DPyA~~~e~~-------------p~~aS~V~d~--~~~w~d~~W~~~r 738 (1224)
T PRK14705 682 PGVVAGACYKFEILTK----AGQW----VEKADPLAFGTEVP-------------PLTASRVVEA--SYAFKDAEWMSAR 738 (1224)
T ss_pred CCCCCCCEEEEEEEcC----CCcE----EecCCccccccccC-------------CCCCeEEeCC--CCCcCChhhhhcc
Confidence 9999999999999864 3433 35799999987543 2345788773 599998877531
Q ss_pred ----C-CCCceEEEEeecCccccCCCCCCCCcchhccccc-cccc-----------------------------------
Q 005552 235 ----P-QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEK-LDHL----------------------------------- 273 (691)
Q Consensus 235 ----~-~~~~vIYElHVr~Ft~~~~~~~~~~Gtf~g~~ek-LdyL----------------------------------- 273 (691)
+ .++++|||+|||+|+. .|+|++++++ ||||
T Consensus 739 ~~~~~~~~p~~IYEvHvgsf~~--------~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~r 810 (1224)
T PRK14705 739 AERDPHNSPMSVYEVHLGSWRL--------GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSR 810 (1224)
T ss_pred ccCCCCcCCcEEEEEEeccccc--------CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcc
Confidence 2 4789999999999987 4899999988 6999
Q ss_pred ----------------------------------------CCc-ccc--------ccCccC-cCCCCCHHHHHHHHHHHH
Q 005552 274 ----------------------------------------KGE-FYN--------YSGCGN-TFNCNHPVVRQFIVDCLR 303 (691)
Q Consensus 274 ----------------------------------------~g~-y~n--------~sg~g~-dln~~~p~vr~~iid~l~ 303 (691)
+|. +|. ...||. .||+++++||+||+++++
T Consensus 811 yGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 811 FGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 221 221 123443 589999999999999999
Q ss_pred HHHHhccccEEEEeccccccc-----cCcccccccccCcccccccccCCCCCCChhHHHHHhc--CCCCCCcEEEeecCC
Q 005552 304 YWVTEMHVDGFRFDLASIMTR-----GSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWD 376 (691)
Q Consensus 304 yWl~eygVDGFRfD~~~~i~~-----~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--dp~~~~~~liaE~w~ 376 (691)
||++||||||||||++.+|.. ....|.. +.+|. ...+....|++.+.. ....+++++|||.+.
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~p-n~~gg---------~en~~ai~fl~~ln~~v~~~~p~~~~IAEest 960 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRP-NRFGG---------RENLEAISFLQEVNATVYKTHPGAVMIAEEST 960 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccc-cccCC---------ccChHHHHHHHHHHHHHHHHCCCeEEEEEcCC
Confidence 999999999999999988732 2233432 33321 122333345544421 113459999999876
Q ss_pred CC-CcccccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCCCCchhhhhh
Q 005552 377 TG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVS 455 (691)
Q Consensus 377 ~~-~~~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~ 455 (691)
.. ++.......++||+++||+.|++.+..++..+..+...-...++.+ ..|. ...+.+ +..|||+..-.. -+
T Consensus 961 ~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~-~~ya----~~e~fv-l~~SHDevvhgk-~s 1033 (1224)
T PRK14705 961 AFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFS-LVYA----FTENFL-LPISHDEVVHGK-GS 1033 (1224)
T ss_pred CCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHH-HHHH----hhcCEe-cccccccccccc-hh
Confidence 53 2211112345789999999999988888876543221111111111 1111 001222 557999874211 11
Q ss_pred hccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCCCCCCCCC
Q 005552 456 YNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHD 535 (691)
Q Consensus 456 ~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~ 535 (691)
. .|.+.|++ ..+.+.+|++++++|++||+||||||+|||+..+++.
T Consensus 1034 l---~~km~Gd~-------------------------~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~------ 1079 (1224)
T PRK14705 1034 M---LRKMPGDR-------------------------WQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSE------ 1079 (1224)
T ss_pred H---HHhCCCcH-------------------------HHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccc------
Confidence 0 12233332 1245678899999999999999999999999987643
Q ss_pred CCccccccCcccc-cchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEE
Q 005552 536 NDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYV 614 (691)
Q Consensus 536 ~~~~~~~W~~~~~-~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llV 614 (691)
...++|...+. .++.+++|+|+|++||+++|+|+..+... ..++|.... +.+++|++|.|.+..++.++|
T Consensus 1080 --~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~d~~~-~gf~wi~~~------d~~~~vlaf~R~~~~~~~vlv 1150 (1224)
T PRK14705 1080 --QHGLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQRDNEP-GGFQWINGG------DADRNVLSFIRWDGDGNPLVC 1150 (1224)
T ss_pred --cccCCCcccCChhhHHHHHHHHHHHHHHhcChhhhccCCCC-CceEEeecC------CCCCcEEEEEEeCCCCCEEEE
Confidence 24699998764 35789999999999999999999887665 678886432 356789999998754467999
Q ss_pred EEeCCCCcEE-EEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEEec
Q 005552 615 AFNASHLPVI-ISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLS 686 (691)
Q Consensus 615 v~N~~~~~~~-v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~~~ 686 (691)
|+||++.++. +.|..+..+.|++++||+...+++..........+...+..+...+..++|||++++||++.
T Consensus 1151 v~Nftp~~~~~y~igvp~~G~y~eilnsd~~~ygGsg~~n~~~~~~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1151 AINFSGGPHKGYTLGVPAAGAWTEVLNTDHETYGGSGVLNPGSLKATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred EEcCCCCCccCceECCCCCCeEEEEEeCchhhcCCCCcCCCCceeecccccCCCCceEEEEecCCEEEEEEEC
Confidence 9999998775 55544434699999999987655543222112222222334456688999999999999864
No 13
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.7e-59 Score=537.83 Aligned_cols=499 Identities=19% Similarity=0.269 Sum_probs=328.9
Q ss_pred CCCCeEEeCC----cEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCc
Q 005552 96 TPFGATLRDG----GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (691)
Q Consensus 96 ~~lGa~~~~~----g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~ 171 (691)
..||||+.++ ||+||||||+|++|+|+ +++++|+. ..++|.+ ..+|+|++++++..+|..|+|+|...
T Consensus 25 ~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~-gdfn~w~~----~~~~m~~---~~~Gvw~~~i~~~~~g~~Y~y~v~~~ 96 (633)
T PRK12313 25 EYLGAHLEEVDGEKGTYFRVWAPNAQAVSVV-GDFNDWRG----NAHPLVR---RESGVWEGFIPGAKEGQLYKYHISRQ 96 (633)
T ss_pred hcCCcEEeccCCcccEEEEEECCCCCEEEEE-EecCCCCc----ccccccc---cCCCEEEEEeCCCCCCCEEEEEEECC
Confidence 3799999876 89999999999999999 79999864 3467753 47899999999999999999999642
Q ss_pred cCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCC------CCCCceEEEEe
Q 005552 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKY------PQRDLIIYEVH 245 (691)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~~------~~~~~vIYElH 245 (691)
.|. ...+.||||+++.... ..+|+|++ .+.|.|+++.|... ..++++|||+|
T Consensus 97 ----~g~----~~~~~DPya~~~~~~~-------------~~~s~v~d-~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~h 154 (633)
T PRK12313 97 ----DGY----QVEKIDPFAFYFEARP-------------GTASIVWD-LPEYKWKDGLWLARRKRWNALDRPISIYEVH 154 (633)
T ss_pred ----CCe----EEecCCCceEEEecCC-------------CCceEECC-CcccCCCChhhhhccccCCCCCCCceEEEEe
Confidence 232 2357999999986431 23467776 35799999876422 23789999999
Q ss_pred ecCccccCCCCCCCCcchhcccccc-ccc---------------------------------------------------
Q 005552 246 VRGFTRHESSKTEHPGTYLGVVEKL-DHL--------------------------------------------------- 273 (691)
Q Consensus 246 Vr~Ft~~~~~~~~~~Gtf~g~~ekL-dyL--------------------------------------------------- 273 (691)
||+|+.++..+ .|||++++++| |||
T Consensus 155 v~~f~~~~~~~---~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~ 231 (633)
T PRK12313 155 LGSWKRNEDGR---PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQ 231 (633)
T ss_pred hhccccCCCCC---ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHH
Confidence 99999865433 69999999995 999
Q ss_pred ------------------------CCc-ccc--------ccCcc-CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEecc
Q 005552 274 ------------------------KGE-FYN--------YSGCG-NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 319 (691)
Q Consensus 274 ------------------------~g~-y~n--------~sg~g-~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~ 319 (691)
+|. +|. ...|+ .+||++||+||+||+++++||++||||||||||++
T Consensus 232 ~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~ 311 (633)
T PRK12313 232 NGIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAV 311 (633)
T ss_pred CCCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCh
Confidence 010 111 01222 37999999999999999999999999999999999
Q ss_pred cccc-ccCcccccccccCcccccccccCCCCCCChhHHHHHhc--CCCCCCcEEEeecCCCCCccccc-CCCCCccccee
Q 005552 320 SIMT-RGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWDTGGLYQVG-IFPHWGIWSEW 395 (691)
Q Consensus 320 ~~i~-~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--dp~~~~~~liaE~w~~~~~~~~~-~fp~~g~~~~w 395 (691)
..|. .+.... ..|.+.............+++.+.. ..+.|++++|||.|......... ...++||++.|
T Consensus 312 ~~~~~~d~~~~-------~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w 384 (633)
T PRK12313 312 SNMLYLDYDEE-------GEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKW 384 (633)
T ss_pred hhhhhcccccc-------cCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCcee
Confidence 8663 211000 0011110000000111223333211 11345999999987543111111 11246799999
Q ss_pred cCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCCCC-----chhhhhhhccccccccCCCCCC
Q 005552 396 NGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGF-----SLADLVSYNQKHNLANGEDNND 470 (691)
Q Consensus 396 n~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~-----rl~d~~~~~~k~n~~~G~~~~d 470 (691)
|..|++.++.++.....+.......+... ..+. .... .++++|||+. |+..++ .|++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~e~-~~l~~sHD~~~~g~~~~~~~~---------~g~~--- 446 (633)
T PRK12313 385 NMGWMNDTLRYFEEDPIYRKYHHNLLTFS-FMYA----FSEN-FVLPFSHDEVVHGKKSLMHKM---------PGDR--- 446 (633)
T ss_pred CcHHHHHHHHHhhhCccccccccccchHH-Hhhh----hhcc-cccCCCCcccccCCccHHHhc---------CCCH---
Confidence 99999998888765432111000000000 0000 0011 1367899995 333221 1110
Q ss_pred CCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccc-c
Q 005552 471 GETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE-S 549 (691)
Q Consensus 471 g~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~-~ 549 (691)
..+.+++|++++++||+||+||||||+|+|+.+.+. ...+|+|+..+. .
T Consensus 447 ----------------------~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~--------~~~~l~W~~~~~~~ 496 (633)
T PRK12313 447 ----------------------WQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWK--------HDESLEWHLLEDPM 496 (633)
T ss_pred ----------------------HHHHHHHHHHHHHHHhCCCCcEeecccccccCccCC--------ccCCCCccccCChh
Confidence 113567889999999999999999999999987543 236799997543 2
Q ss_pred chhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEc-cCCCEEEEEEeCCCCcEE-EEc
Q 005552 550 KSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLID-SVKGEIYVAFNASHLPVI-ISL 627 (691)
Q Consensus 550 ~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~-~~~~~llVv~N~~~~~~~-v~l 627 (691)
+.++++|||+||+||+++|+|+.+++.. ..+.|.... +.++++++|.|.. ..++.++||+|+++.+.. +.|
T Consensus 497 ~~~l~~~~r~Li~LRr~~paL~~~d~~~-~~~~~l~~~------~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i 569 (633)
T PRK12313 497 NAGMQRFTSDLNQLYKDEPALWELDFSP-DGFEWIDAD------DADQSVLSFIRKGKNKGDFLVVVFNFTPVEREDYRI 569 (633)
T ss_pred HHHHHHHHHHHHHHHHhChHhhcccCCC-CCcEEEECc------CCCCCEEEEEEeCCCCCceEEEEEeCCCCcccceeE
Confidence 4789999999999999999999887633 345554321 2356899999986 225789999999986543 444
Q ss_pred CCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEEecCCC
Q 005552 628 PKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSPDE 689 (691)
Q Consensus 628 p~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~~~~~~ 689 (691)
+.+.++.|+++++|+...+++..........+......+...+..+.|||+|++||+++++.
T Consensus 570 ~~p~~g~~~~ilnsd~~~ygG~~~~~~~~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~~~~ 631 (633)
T PRK12313 570 GVPVAGIYEEILNTDSEEFGGSGKGNNGTVKAQEGPWHGRPQSLTLTLPPLGALVLKPKRRL 631 (633)
T ss_pred CCCCCCeEEEEEcCCchhcCCCCcCCCCceeecccccCCCCCEEEEEeCCCEEEEEEEcccc
Confidence 43334699999999987655442211000111101112223456799999999999998753
No 14
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=1e-58 Score=529.36 Aligned_cols=489 Identities=17% Similarity=0.240 Sum_probs=320.9
Q ss_pred CCCeEEeC----CcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCcc
Q 005552 97 PFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (691)
Q Consensus 97 ~lGa~~~~----~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~~ 172 (691)
.||||+.+ +||+||||||+|++|+|+ +++++|+. ...+|.+ ...+|+|+++++++.+|+.|+|+|+..
T Consensus 16 ~LGah~~~~~~~~g~~FrvwAP~A~~V~L~-~dfn~w~~----~~~~m~~--~~~~Gvw~~~i~~~~~g~~Y~y~v~~~- 87 (613)
T TIGR01515 16 LLGSHYMELDGVSGTRFCVWAPNAREVRVA-GDFNYWDG----REHPMRR--RNDNGIWELFIPGIGEGELYKYEIVTN- 87 (613)
T ss_pred hcCceEeccCCcCcEEEEEECCCCCEEEEE-EecCCCCC----ceecceE--ecCCCEEEEEeCCCCCCCEEEEEEECC-
Confidence 69999986 789999999999999999 68888854 3457753 234799999999999999999999743
Q ss_pred CCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCCCCCCCCCCCCCC-----CCC-CCceEEEEee
Q 005552 173 SPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK-----YPQ-RDLIIYEVHV 246 (691)
Q Consensus 173 ~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~-----~~~-~~~vIYElHV 246 (691)
+|. ...++||||+++..+. ..+|+|++ .+.|.|++..|.. .+. +++||||+||
T Consensus 88 ---~g~----~~~~~DPYA~~~~~~~-------------~~~s~v~d-~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv 146 (613)
T TIGR01515 88 ---NGE----IRLKADPYAFYAEVRP-------------NTASLVYD-LEGYSWQDQKWQEKRKAKTPYEKPVSIYELHL 146 (613)
T ss_pred ---CCc----EEEeCCCCEeeeccCC-------------CCcEEEEC-CccCccCchhhhhcccccCcccCCceEEEEeh
Confidence 222 2468999999886431 23467776 3578887765532 233 4789999999
Q ss_pred cCccccCCCCCCCCcchhcccccc-ccc----------------------------------------------------
Q 005552 247 RGFTRHESSKTEHPGTYLGVVEKL-DHL---------------------------------------------------- 273 (691)
Q Consensus 247 r~Ft~~~~~~~~~~Gtf~g~~ekL-dyL---------------------------------------------------- 273 (691)
|+|+. .|||++++++| |||
T Consensus 147 ~~~~~--------~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~ 218 (613)
T TIGR01515 147 GSWRH--------GLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQA 218 (613)
T ss_pred hhccC--------CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHC
Confidence 99976 49999999996 999
Q ss_pred -----------------------CCc--cc-c------ccCcc-CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccc
Q 005552 274 -----------------------KGE--FY-N------YSGCG-NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320 (691)
Q Consensus 274 -----------------------~g~--y~-n------~sg~g-~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~ 320 (691)
++. |+ . ...|| ++||+++|+||+||+++++||++||||||||||++.
T Consensus 219 Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~ 298 (613)
T TIGR01515 219 GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVA 298 (613)
T ss_pred CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHH
Confidence 111 11 0 11233 368999999999999999999999999999999997
Q ss_pred cccc-----cCcccccccccCcccccccccCCCCCCChhHHHHHhc--CCCCCCcEEEeecCCCCCcccccC-CCCCccc
Q 005552 321 IMTR-----GSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWDTGGLYQVGI-FPHWGIW 392 (691)
Q Consensus 321 ~i~~-----~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--dp~~~~~~liaE~w~~~~~~~~~~-fp~~g~~ 392 (691)
.|.. ....|.. .............|++.+.. ..+.+++++|||.+.......... -.+++|+
T Consensus 299 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd 368 (613)
T TIGR01515 299 SMLYLDYSRDEGEWSP----------NEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFH 368 (613)
T ss_pred Hhhhhccccccccccc----------cccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcC
Confidence 7632 1111211 10000011111224433321 113459999999864331110000 1235799
Q ss_pred ceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCC
Q 005552 393 SEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGE 472 (691)
Q Consensus 393 ~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~ 472 (691)
++||+.|++.++.++.... ....+..........+. ..... .+++|||+.+..+... .|.+.|++
T Consensus 369 ~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~e~~-~~~~sHD~~~~g~~~i----~~~~~g~~----- 433 (613)
T TIGR01515 369 YKWNMGWMHDTLDYMSTDP-VERQYHHQLITFSMLYA----FSENF-VLPLSHDEVVHGKKSL----LNKMPGDY----- 433 (613)
T ss_pred eeeCchHHHHHHHHHhhCh-hhHhhccccccHHHHHH----hhhcc-ccCCCCCCcccCcccH----HHhCCCch-----
Confidence 9999999999998875432 22222110000000010 00122 2678999953211000 01222221
Q ss_pred CCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccc-cch
Q 005552 473 THNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE-SKS 551 (691)
Q Consensus 473 ~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~-~~~ 551 (691)
....+++|++++++||+||+||||||+|+|+.+++.. ...++|+..+. .+.
T Consensus 434 --------------------~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~--------~~~l~W~~~~~~~~~ 485 (613)
T TIGR01515 434 --------------------WQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWND--------TEQLDWHLLSFPMHQ 485 (613)
T ss_pred --------------------HHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCC--------CccCCCccccCcccH
Confidence 0124578889999999999999999999999875432 25799986442 347
Q ss_pred hHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccC-CCEEEEEEeCCCCcEE---EEc
Q 005552 552 DFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSV-KGEIYVAFNASHLPVI---ISL 627 (691)
Q Consensus 552 ~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~-~~~llVv~N~~~~~~~---v~l 627 (691)
.+++|||+||+||+++|+|+.+++.. ..++|.... +.+.++++|.|.... ++.++||+|+++.+.. +.+
T Consensus 486 ~l~~~~k~L~~Lr~~~paL~~~~~~~-~~~~~~~~~------~~~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~~Y~i~~ 558 (613)
T TIGR01515 486 GVSVFVRDLNRTYQKSKALYEHDFDP-QGFEWIDVD------DDEQSVFSFIRRAKKHGEALVIICNFTPVVRHQYRVGV 558 (613)
T ss_pred HHHHHHHHHHHHHhhCHHhhccCCCC-CceEEEEcc------cCCCCEEEEEEecCCCCCeEEEEEeCCCCCccceEeCC
Confidence 89999999999999999999888754 446665321 235689999998642 3579999999997654 555
Q ss_pred CCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEE
Q 005552 628 PKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILL 684 (691)
Q Consensus 628 p~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~ 684 (691)
|. +++|+++++|+...+.+..........+......+..++..++|||+|++||+
T Consensus 559 p~--~g~~~~il~Sd~~~~gG~g~~~~~~~~~~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 559 PQ--PGQYREVLNSDSETYGGSGQGNKGPLSAEEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred CC--CCeEEEEEeCChhhcCCCCcCCCCceeccccccCCCCCEEEEEeCCcEEEEeC
Confidence 54 35999999998866444322221111111112223345678999999999984
No 15
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.7e-58 Score=537.08 Aligned_cols=499 Identities=19% Similarity=0.296 Sum_probs=326.5
Q ss_pred CCCCeEEeC----CcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCc
Q 005552 96 TPFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (691)
Q Consensus 96 ~~lGa~~~~----~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~ 171 (691)
..||||+.. +||+||||||+|++|+|+ +++++|+. ...+|.+ ...+|+|+++||++.+|..|+|+|+..
T Consensus 118 ~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~-gdfn~w~~----~~~~m~~--~~~~Gvw~~~i~~~~~g~~Y~y~v~~~ 190 (726)
T PRK05402 118 ETLGAHPVTVDGVSGVRFAVWAPNARRVSVV-GDFNGWDG----RRHPMRL--RGESGVWELFIPGLGEGELYKFEILTA 190 (726)
T ss_pred hccccEEeccCCCCcEEEEEECCCCCEEEEE-EEcCCCCC----ccccceE--cCCCCEEEEEeCCCCCCCEEEEEEeCC
Confidence 479999875 789999999999999999 68998864 2457753 126799999999999999999999853
Q ss_pred cCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCCCCCCCCCCCCCC------CCCCCceEEEEe
Q 005552 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK------YPQRDLIIYEVH 245 (691)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~------~~~~~~vIYElH 245 (691)
.|.. ..+.||||+++..+. ..+|+|++ .+.|.|+++.|+. ...++++|||+|
T Consensus 191 ----~g~~----~~~~DPYa~~~~~~~-------------~~~s~v~d-~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~h 248 (726)
T PRK05402 191 ----DGEL----LLKADPYAFAAEVRP-------------ATASIVAD-LSQYQWNDAAWMEKRAKRNPLDAPISIYEVH 248 (726)
T ss_pred ----CCcE----eecCCCceEEEecCC-------------CCcEEEeC-CccCCCCCcchhhcccccCcccCCcEEEEEe
Confidence 3332 357999999997541 23567776 4689999998763 245789999999
Q ss_pred ecCccccCCCCCCCCcchhcccccc-ccc---------------------------------------------------
Q 005552 246 VRGFTRHESSKTEHPGTYLGVVEKL-DHL--------------------------------------------------- 273 (691)
Q Consensus 246 Vr~Ft~~~~~~~~~~Gtf~g~~ekL-dyL--------------------------------------------------- 273 (691)
||+|+.+.+. ...|||+|++++| |||
T Consensus 249 v~~f~~~~~~--~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~ 326 (726)
T PRK05402 249 LGSWRRHEDG--GRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQ 326 (726)
T ss_pred hhhhccCCCC--CcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHH
Confidence 9999986222 2369999999995 999
Q ss_pred ------------------------CCc-cccc--------cCcc-CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEecc
Q 005552 274 ------------------------KGE-FYNY--------SGCG-NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 319 (691)
Q Consensus 274 ------------------------~g~-y~n~--------sg~g-~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~ 319 (691)
+|. +|.+ ..|+ ..||+++|+||+||+++++||++||||||||||++
T Consensus 327 ~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v 406 (726)
T PRK05402 327 AGIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAV 406 (726)
T ss_pred CCCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCH
Confidence 010 0100 1122 25799999999999999999999999999999998
Q ss_pred ccccc-c----CcccccccccCcccccccccCCCCCCChhHHHHHhc--CCCCCCcEEEeecCCCCC-cccccCCCCCcc
Q 005552 320 SIMTR-G----SSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWDTGG-LYQVGIFPHWGI 391 (691)
Q Consensus 320 ~~i~~-~----~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--dp~~~~~~liaE~w~~~~-~~~~~~fp~~g~ 391 (691)
..+.. + ...|.. +.++ .........+++.+.+ ..+.+++++|||.+.... ........+.+|
T Consensus 407 ~~~~~~~~~~~~g~~~~-~~~~---------~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gf 476 (726)
T PRK05402 407 ASMLYLDYSRKEGEWIP-NIYG---------GRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGF 476 (726)
T ss_pred HHhhhcccccccccccc-cccc---------CcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCC
Confidence 77631 1 111211 0000 0000111123333311 113459999999754321 100011123578
Q ss_pred cceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCC
Q 005552 392 WSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDG 471 (691)
Q Consensus 392 ~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg 471 (691)
++.||+.|++.+..++.............+..+ ..+. ...+ .+++.|||+.+....-. .+...|++
T Consensus 477 d~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~----~~e~-~~l~~sHD~~~~g~~~l----~~~~~g~~---- 542 (726)
T PRK05402 477 GYKWNMGWMHDTLDYMERDPIYRKYHHNELTFS-LLYA----YSEN-FVLPLSHDEVVHGKGSL----LGKMPGDD---- 542 (726)
T ss_pred CceecCCcchHHHHHHhhCcccccccccchhHH-HhHh----hhcc-ccCCCCCceeeeCcccH----HhhCCCCH----
Confidence 999999998887777654321111000000000 0000 0011 23778999964211000 00111110
Q ss_pred CCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccc-cc
Q 005552 472 ETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE-SK 550 (691)
Q Consensus 472 ~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~-~~ 550 (691)
..+.+++|++++++||+||+||||||||+|+++.+. ..++|+|+..+. .+
T Consensus 543 ---------------------~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~--------~~~~l~W~~~~~~~~ 593 (726)
T PRK05402 543 ---------------------WQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWN--------HDASLDWHLLDFPWH 593 (726)
T ss_pred ---------------------HHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCC--------ccCcCCccccCCcch
Confidence 113567889999999999999999999999997542 247899987543 24
Q ss_pred hhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccC-CCEEEEEEeCCCCcE---EEE
Q 005552 551 SDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSV-KGEIYVAFNASHLPV---IIS 626 (691)
Q Consensus 551 ~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~-~~~llVv~N~~~~~~---~v~ 626 (691)
..+++|||+||+||+++|+|+.+++.. ..+.|.... +.+++|++|.|.... ++.++||+|+++.++ .+.
T Consensus 594 ~~l~~~~k~Li~Lr~~~~aL~~g~~~~-~~~~~~~~~------~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~ 666 (726)
T PRK05402 594 RGVQRLVRDLNHLYRAEPALHELDFDP-EGFEWIDAD------DAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLG 666 (726)
T ss_pred HHHHHHHHHHHHHHHhChhhhccccCc-CCeeEEecc------cCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEEC
Confidence 789999999999999999999887754 345554221 235689999998542 478999999998653 455
Q ss_pred cCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEEecC
Q 005552 627 LPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSP 687 (691)
Q Consensus 627 lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~~~~ 687 (691)
+|. +++|+++++|+...+.+..........+...+......+..++|||+|++||++..
T Consensus 667 ~p~--~g~~~~ilnsd~~~~gg~~~~~~~~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~~~ 725 (726)
T PRK05402 667 VPQ--AGRWREVLNTDAEHYGGSNVGNGGGVHAEEVPWHGRPHSLSLTLPPLATLILKPEA 725 (726)
T ss_pred CCC--CCeEEEEEcCcchhhCCCCCCCCCceeccccccCCCCCEEEEEeCCCEEEEEEEcC
Confidence 554 46999999999876555432111111111111222345678999999999998753
No 16
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2e-57 Score=513.76 Aligned_cols=509 Identities=17% Similarity=0.189 Sum_probs=338.5
Q ss_pred CCCCeEEeCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcC------CCCCceEEEEEc
Q 005552 96 TPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKG------DFKDMLYGYKFD 169 (691)
Q Consensus 96 ~~lGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g------~~~g~~Y~y~i~ 169 (691)
..||||+.++||+||||||+|++|+|+ ++||+|+. ..++|++ ...|+|+++||+ +.+|++|+|+|.
T Consensus 105 ~~lGa~~~~~g~~FrvWAP~A~~V~Lv-GdFN~W~~----~~~~M~~---~~~GvWe~~ip~~~g~~~~~~G~~Yky~i~ 176 (758)
T PLN02447 105 EKFGFNRSEGGITYREWAPGAKAAALI-GDFNNWNP----NAHWMTK---NEFGVWEIFLPDADGSPAIPHGSRVKIRME 176 (758)
T ss_pred HhceeEEecCCEEEEEECCCCCEEEEE-EecCCCCC----CccCcee---CCCCEEEEEECCccccccCCCCCEEEEEEE
Confidence 479999999999999999999999998 89999964 3467763 568999999999 889999999998
Q ss_pred CccCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCC--CCCCCCCCCCCCCCCCCceEEEEeec
Q 005552 170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPE--DEFDWEGDLPLKYPQRDLIIYEVHVR 247 (691)
Q Consensus 170 g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~W~~~~~~~~~~~~~vIYElHVr 247 (691)
+. +|. ...++||||+.++..... . ....+++++++. ++|.|++..++ .+.+++|||+|||
T Consensus 177 ~~----~g~----~~~r~dpya~~~~~~p~~--~------~~~~~svv~dp~~~~~y~w~~~~~~--~~~~~~IYE~Hvg 238 (758)
T PLN02447 177 TP----DGR----WVDRIPAWIKYAVQAPGE--I------GAPYNGVYWDPPEEEKYVFKHPRPP--RPAALRIYEAHVG 238 (758)
T ss_pred eC----CCc----EEeecCchHheeeccCCc--c------CCCCceEEeCCCCCCCCCCCCCCCC--CCCCCEEEEEeCC
Confidence 54 232 246899999988654210 0 012357888753 35999987543 4578999999999
Q ss_pred CccccCCCCCCCCcchhccccc-cccc-----------------------------------------------------
Q 005552 248 GFTRHESSKTEHPGTYLGVVEK-LDHL----------------------------------------------------- 273 (691)
Q Consensus 248 ~Ft~~~~~~~~~~Gtf~g~~ek-LdyL----------------------------------------------------- 273 (691)
+|+.++ ..|||++++++ ||||
T Consensus 239 ~~~~~~-----~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~G 313 (758)
T PLN02447 239 MSSEEP-----KVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLG 313 (758)
T ss_pred cccCCC-----CCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCC
Confidence 997533 25999998765 8998
Q ss_pred -----------------------C---Cccccc------cCccC-cCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccc
Q 005552 274 -----------------------K---GEFYNY------SGCGN-TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320 (691)
Q Consensus 274 -----------------------~---g~y~n~------sg~g~-dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~ 320 (691)
+ +.||.. ..|+. .||+++++||+||+++++||++||||||||||++.
T Consensus 314 I~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~ 393 (758)
T PLN02447 314 LRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVT 393 (758)
T ss_pred CEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchh
Confidence 0 123321 12332 59999999999999999999999999999999999
Q ss_pred cccccC-----cccccccc-cCcccccccccCCCCCCChhHHHHHhc--CCCCCCcEEEeecCCCC-CcccccCCCCCcc
Q 005552 321 IMTRGS-----SLWDSVNV-YGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWDTG-GLYQVGIFPHWGI 391 (691)
Q Consensus 321 ~i~~~~-----~~w~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~i~~--dp~~~~~~liaE~w~~~-~~~~~~~fp~~g~ 391 (691)
+|..-. .|....+. +|. .+......++..+.. +...|++++|||.++.. ++...-.-.++||
T Consensus 394 smlY~~hg~~~~f~~~~~~~~g~---------~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGF 464 (758)
T PLN02447 394 SMLYHHHGLQMAFTGNYNEYFGM---------ATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGF 464 (758)
T ss_pred hhhccccCcccccccCcccccCC---------ccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCc
Confidence 985321 12211111 111 111222223333211 12456999999986543 2211112235789
Q ss_pred cceecCcccHHHHHHHcCCCCc---HHHHHHHHcCCCccccCCCCCCCceEEEeecCCCCchhhhhhhccccccccCCCC
Q 005552 392 WSEWNGKYRDIVRQFIKGTDGF---AGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDN 468 (691)
Q Consensus 392 ~~~wn~~f~d~~r~~~~g~~~~---~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~ 468 (691)
++.||+.+++....+++..... ...+...|. + .+...+.|.|.+|||++...++-.. ..++.++.
T Consensus 465 Dykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~-----~---r~~~E~~I~y~eSHDevv~Gkksl~---~~l~d~~m- 532 (758)
T PLN02447 465 DYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLT-----N---RRYTEKCVAYAESHDQALVGDKTIA---FWLMDKEM- 532 (758)
T ss_pred ceEECCccchHHHHHHhhCCCcccCHHHHHHHHh-----c---ccccCceEeccCCcCeeecCcchhH---hhhcchhh-
Confidence 9999999999999999875421 223333332 1 1233588899999999865432210 00010000
Q ss_pred CCCCCCCCCCccCCCCch-hhHHHHHHHHHHHHHHHHHHHhcCCc-eeEecCCccccCC------CCCCCCCCCCCCccc
Q 005552 469 NDGETHNNSWNCGQEGEF-ANILVKKLRRRQMRNFFLCLMVSQGV-PMISMGDEYGHTK------GGNNNTYCHDNDINY 540 (691)
Q Consensus 469 ~dg~~~n~sw~~g~~g~~-~~~~~~~~r~~~~k~a~a~lltspGi-P~iy~G~E~g~~~------~g~~n~y~~~~~~~~ 540 (691)
. + ...+.. .+..+. ...+..|++.+++|++||. +|+|||+|||++. .+++.+|. ..+
T Consensus 533 -----y---~--~m~~~~~~~~~~~-R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~----~~~ 597 (758)
T PLN02447 533 -----Y---D--GMSTLTPATPVVD-RGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYD----KCR 597 (758)
T ss_pred -----h---h--cCCCChhhhhhHH-HHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcccccccCcc----ccc
Confidence 0 0 001100 111111 1234467788899999999 7999999999974 34444442 245
Q ss_pred cccCccccc---chhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEe
Q 005552 541 FRWDKKEES---KSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFN 617 (691)
Q Consensus 541 ~~W~~~~~~---~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N 617 (691)
++|+..+.. ++.|.+|+|+|++|++++|+|..+ ..|... .+++++||+|.|. .++||+|
T Consensus 598 ~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~-------~~~i~~------~d~~~~Viaf~R~-----~ll~V~N 659 (758)
T PLN02447 598 RRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSE-------HQYVSR------KDEGDKVIVFERG-----DLVFVFN 659 (758)
T ss_pred CCccccCCCchhhhHHHHHHHHHHHHHhcCccccCC-------Cceeee------ecCCCCEEEEEeC-----CeEEEEe
Confidence 899987643 588999999999999999999753 223221 2466799999993 4999999
Q ss_pred CCCC-cE-EEEcCCCCCCceEEEecCCCCCCCCCcCCCCch-hHHHhhhcCCCCCCceEEeeCCeEEEEEecCCC
Q 005552 618 ASHL-PV-IISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPA-KEIAIKQYAPFLDANLYPMLSYSSIILLLSPDE 689 (691)
Q Consensus 618 ~~~~-~~-~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~p~s~~Vl~~~~~~ 689 (691)
|++. +. .+.|..+..++|++++||+...++|....+... ..+...+......+..++|||++++||.++.+.
T Consensus 660 F~p~~s~~~Y~igvp~~G~y~~ilnSD~~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~~~~~ 734 (758)
T PLN02447 660 FHPTNSYSDYRVGCDKPGKYKIVLDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRTAVVYAPVDED 734 (758)
T ss_pred CCCCCCCCCcEECCCCCCeEEEEECCCchhcCCCCccCCCccEEecccCcCCCCcEEEEEeCCceEEEEEECCcc
Confidence 9984 33 455555445699999999988776654322111 111112233445678899999999999997754
No 17
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=5.1e-57 Score=507.32 Aligned_cols=398 Identities=26% Similarity=0.397 Sum_probs=285.3
Q ss_pred EEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCccCCCCCCccCCCccc
Q 005552 107 VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIV 186 (691)
Q Consensus 107 ~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~~~~~~g~~~~~~~~~ 186 (691)
|+|+||||+|++|+|+|+. ..++|. +.++|+|+++++++.+|.+|+|+|+|. ..+
T Consensus 1 v~FrlwAP~A~~V~L~l~~----------~~~~m~---k~~~GvW~~~v~~~~~G~~Y~y~v~g~------------~~v 55 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNG----------ALHAMQ---RLGDGWFEITVPPVGPGDRYGYVLDDG------------TPV 55 (542)
T ss_pred CEEEEECCCCCEEEEEeCC----------CEEeCe---ECCCCEEEEEECCCCCCCEEEEEEeee------------EEe
Confidence 6899999999999999731 257886 457799999999999999999999862 268
Q ss_pred cCccccceecccccCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCCCceEEEEeecCccccCCCCCCCCcchhcc
Q 005552 187 LDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGV 266 (691)
Q Consensus 187 ~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~~~~~~~~~~~~~vIYElHVr~Ft~~~~~~~~~~Gtf~g~ 266 (691)
+||||+++.. ++++ .|+|++ ...|.|+++.|+..+++++||||+|||+|+. .|||+|+
T Consensus 56 ~DPya~~~~~----~~~~---------~S~V~d-~~~~~w~~~~~~~~~~~~~viYE~hv~~f~~--------~G~~~gi 113 (542)
T TIGR02402 56 PDPASRRQPD----GVHG---------PSQVVD-PDRYAWQDTGWRGRPLEEAVIYELHVGTFTP--------EGTFDAA 113 (542)
T ss_pred cCcccccccc----CCCC---------CeEEec-CcccCCCCccccCCCccccEEEEEEhhhcCC--------CCCHHHH
Confidence 9999998632 2222 256666 3579999999988889999999999999987 6999999
Q ss_pred ccccccc-------------------------------------------------------------------CCc---
Q 005552 267 VEKLDHL-------------------------------------------------------------------KGE--- 276 (691)
Q Consensus 267 ~ekLdyL-------------------------------------------------------------------~g~--- 276 (691)
+++|||| ++.
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~ 193 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLP 193 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccccc
Confidence 9999999 111
Q ss_pred ----cc---cccCccCcCCCCCH---HHHHHHHHHHHHHHHhccccEEEEeccccccccC--cccccccccCcccccccc
Q 005552 277 ----FY---NYSGCGNTFNCNHP---VVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGS--SLWDSVNVYGIPIEGDLL 344 (691)
Q Consensus 277 ----y~---n~sg~g~dln~~~p---~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~--~~w~~~~~~g~~~~~~~~ 344 (691)
|| ..++||+++|+++| +||++|+++++||++||||||||||++..|.+.. .+|+++
T Consensus 194 ~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~------------ 261 (542)
T TIGR02402 194 RYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEEL------------ 261 (542)
T ss_pred ccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHH------------
Confidence 33 24689999999999 9999999999999999999999999999886432 244432
Q ss_pred cCCCCCCChhHHHHHh-cCCCCCCcEEEeecCCCC-CcccccCCCCCcccceecCcccHHHHHHHcCCC-Cc-------H
Q 005552 345 TTGTPLRSPPLIDLIS-NDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GF-------A 414 (691)
Q Consensus 345 ~~g~~~~~~~~~~~i~-~dp~~~~~~liaE~w~~~-~~~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~-~~-------~ 414 (691)
.+.++ ..|..+.++||||.|... .........+++++++||+.|++.++.++.|.. ++ .
T Consensus 262 -----------~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~ 330 (542)
T TIGR02402 262 -----------AREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPL 330 (542)
T ss_pred -----------HHHHHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCH
Confidence 22222 223112399999987432 111111112356899999999999999998743 22 2
Q ss_pred HHHHHHHcCC------Ccccc-------CCCCCCCceEEEeecCCCC---chhhhhhhccccccccCCCCCCCCCCCCCC
Q 005552 415 GAFAECLCGS------PNLYQ-------GGGRKPWNSINFVCAHDGF---SLADLVSYNQKHNLANGEDNNDGETHNNSW 478 (691)
Q Consensus 415 ~~~~~~l~g~------~~~~~-------~~~~~p~~~vnyl~nHD~~---rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw 478 (691)
..+...|... ...+. .....+.+.|||++|||+. ++.+.+..
T Consensus 331 ~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~gn~~~~~Rl~~---------------------- 388 (542)
T TIGR02402 331 AALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQIGNRALGERLSQ---------------------- 388 (542)
T ss_pred HHHHHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEccCcccccccchhhhhhh----------------------
Confidence 2344443311 00010 0012457899999999963 33333321
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCC------C--------------------CCC
Q 005552 479 NCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGN------N--------------------NTY 532 (691)
Q Consensus 479 ~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~------~--------------------n~y 532 (691)
.+..+++|++++++||+||+||||||||+|++++.. + +++
T Consensus 389 --------------~~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~ 454 (542)
T TIGR02402 389 --------------LLSPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPE 454 (542)
T ss_pred --------------cCCHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccc
Confidence 011357889999999999999999999999998531 0 000
Q ss_pred CCC-------CCccccccCcccc-cchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEE
Q 005552 533 CHD-------NDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTL 604 (691)
Q Consensus 533 ~~~-------~~~~~~~W~~~~~-~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r 604 (691)
..+ ..+++++|+..+. .+.++++|||+||+|||++++|+.++... +... ...++++++|+.
T Consensus 455 ~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~---~~~~--------~~~~~~~~~~~~ 523 (542)
T TIGR02402 455 DVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARA---LEVV--------VDEDPGWVAVRF 523 (542)
T ss_pred cCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCccc---ceee--------ecCCCCEEEEEE
Confidence 011 1358899998752 34889999999999999999999886544 2211 123467888873
Q ss_pred EccCCCEEEEEEeCCCCcEE
Q 005552 605 IDSVKGEIYVAFNASHLPVI 624 (691)
Q Consensus 605 ~~~~~~~llVv~N~~~~~~~ 624 (691)
+ +++++|++|+++++++
T Consensus 524 --~-~~~~~v~~N~~~~~~~ 540 (542)
T TIGR02402 524 --G-RGELVLAANLSTSPVA 540 (542)
T ss_pred --C-CCeEEEEEeCCCCCcC
Confidence 2 4689999999987654
No 18
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.3e-53 Score=464.83 Aligned_cols=504 Identities=20% Similarity=0.294 Sum_probs=335.9
Q ss_pred cccccccCCC----CCCCCeEEeCC---cEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcC
Q 005552 85 SQRFQVSKGY----PTPFGATLRDG---GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKG 157 (691)
Q Consensus 85 ~~~~~~~~g~----~~~lGa~~~~~---g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g 157 (691)
++.+.+..|. ...|||++... ||+|+||||+|.+|.|+ ++||+|+. ...+|.. ..+.|+|+++||+
T Consensus 9 ~d~~~~~~~~~~~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vv-gdfn~w~~----~~~~~~~--~~~~G~we~~vp~ 81 (628)
T COG0296 9 MDDYLFAEGTHLRLYEKLGAHPIENGVSGVRFRVWAPNARRVSLV-GDFNDWDG----RRMPMRD--RKESGIWELFVPG 81 (628)
T ss_pred ccccccccccchhhHhhhCcccccCCCCceEEEEECCCCCeEEEE-eecCCccc----eeccccc--CCCCceEEEeccC
Confidence 3344444443 33799997643 69999999999999999 79999974 3455532 2367999999999
Q ss_pred CCCCceEEEEEcCccCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCCCCCCCC----CCCCCC
Q 005552 158 DFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWE----GDLPLK 233 (691)
Q Consensus 158 ~~~g~~Y~y~i~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~W~----~~~~~~ 233 (691)
+.+|++|+|+|.+. .|. ...++||||++... + |..+|+|.+. .+|.|+ +..|..
T Consensus 82 ~~~G~~Yky~l~~~----~g~----~~~~~DP~a~~~~~----~---------p~~aS~v~~~-~~y~W~d~~~~~~~~~ 139 (628)
T COG0296 82 APPGTRYKYELIDP----SGQ----LRLKADPYARRQEV----G---------PHTASQVVDL-PDYEWQDERWDRAWRG 139 (628)
T ss_pred CCCCCeEEEEEeCC----CCc----eeeccCchhhccCC----C---------CCCcceecCC-CCcccccccccccccC
Confidence 99999999999865 342 24799999997642 2 3456778763 459999 555666
Q ss_pred CCCCCceEEEEeecCccccCCCCCCCCcchhccccccccc----------------------------------------
Q 005552 234 YPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHL---------------------------------------- 273 (691)
Q Consensus 234 ~~~~~~vIYElHVr~Ft~~~~~~~~~~Gtf~g~~ekLdyL---------------------------------------- 273 (691)
+.+++++|||+|||+|+.+ ...|+|.+++++||||
T Consensus 140 ~~~e~~vIYElHvGs~~~~-----~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPe 214 (628)
T COG0296 140 RFWEPIVIYELHVGSFTPD-----RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPE 214 (628)
T ss_pred CCCCCceEEEEEeeeccCC-----CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHH
Confidence 7789999999999999982 3479999999999999
Q ss_pred -----------------------------------CCccc-c--------ccCccCcCC-CCCHHHHHHHHHHHHHHHHh
Q 005552 274 -----------------------------------KGEFY-N--------YSGCGNTFN-CNHPVVRQFIVDCLRYWVTE 308 (691)
Q Consensus 274 -----------------------------------~g~y~-n--------~sg~g~dln-~~~p~vr~~iid~l~yWl~e 308 (691)
+|.++ . .+.||..++ +.+++||+||+++++||+++
T Consensus 215 dfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~ 294 (628)
T COG0296 215 DFKALVDAAHQAGIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEE 294 (628)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHH
Confidence 22211 1 235776544 44999999999999999999
Q ss_pred ccccEEEEeccccccccC-----cccccccccCcccccccccCCCC-CCChhHHHHHh--cCCCCCCcEEEeecCCCCCc
Q 005552 309 MHVDGFRFDLASIMTRGS-----SLWDSVNVYGIPIEGDLLTTGTP-LRSPPLIDLIS--NDPILRGVKLIAEAWDTGGL 380 (691)
Q Consensus 309 ygVDGFRfD~~~~i~~~~-----~~w~~~~~~g~~~~~~~~~~g~~-~~~~~~~~~i~--~dp~~~~~~liaE~w~~~~~ 380 (691)
|||||||+||+..|.... ..|. .+.+| |++ +....++.... ..+..+++++|+|.|.....
T Consensus 295 yHiDGlRvDAV~smly~d~~~~~~~~~-~n~~g----------gr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~ 363 (628)
T COG0296 295 YHIDGLRVDAVASMLYLDYSRAEGEWV-PNEYG----------GRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPH 363 (628)
T ss_pred hCCcceeeehhhhhhccchhhhhhccc-ccccC----------CcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCC
Confidence 999999999999996432 1111 12221 222 11111111110 12245689999999977532
Q ss_pred cccc-CCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCCCCchhhhhhhccc
Q 005552 381 YQVG-IFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQK 459 (691)
Q Consensus 381 ~~~~-~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k 459 (691)
.... ...+.+++..||+.++.++..++.-.+-+...-...++.+ .+ ..+...++|+.|||++--
T Consensus 364 ~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~-~~-----y~~se~~~l~~sHDevvh--------- 428 (628)
T COG0296 364 VTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFG-LL-----YAFSENVVLPLSHDEVVH--------- 428 (628)
T ss_pred ceeeecccccchhhhhhhhhHhhHHHhcccCccccccccCCCccc-cc-----cccceeEeccccccceee---------
Confidence 1111 2234678999999977776666544332221111112111 11 134467779999999821
Q ss_pred cccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCCCCCCCCCCCCCcc
Q 005552 460 HNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDIN 539 (691)
Q Consensus 460 ~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~ 539 (691)
+|.+.|++.. |. ...+.+.+|+++++++++||+||||||+|||+..+++.. .
T Consensus 429 Gk~sl~~rm~--------------g~------~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~--------~ 480 (628)
T COG0296 429 GKRSLGERMP--------------GD------AWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFF--------S 480 (628)
T ss_pred cccchhccCC--------------cc------hhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCccc--------C
Confidence 2333333221 00 123577899999999999999999999999999877532 4
Q ss_pred ccccCcccc---c--chhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEE-c-cCCCEE
Q 005552 540 YFRWDKKEE---S--KSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLI-D-SVKGEI 612 (691)
Q Consensus 540 ~~~W~~~~~---~--~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~-~-~~~~~l 612 (691)
.++|...+. . ++.+.++.+.|.++.+..+.+...++.. +.+.|.... +.+.++++|.|. . ...+.+
T Consensus 481 ~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~-~~~~W~~~~------~~~~~v~af~R~l~~~~~~~l 553 (628)
T COG0296 481 SLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLHEQDFQP-EGFEWIDAD------DAENSVLAFYRRLLALRHEHL 553 (628)
T ss_pred CCChhhhhhccccchHHHHHHHHHhhHHhhccCCccchhhhcc-cCCceeecC------chhhhHHHHHHHHhhcCCceE
Confidence 578854442 2 5889999999999999999999887765 678886542 223479999995 2 323458
Q ss_pred EEEEeCCCCcE-EEEcCCCCCCceEEEecCCCCCCCCCcC--CCCchhHHHhhhcCCCCCCceEEeeCCeEEEEE
Q 005552 613 YVAFNASHLPV-IISLPKRPGYRWEPLVDTSKPEPFDFLS--SDLPAKEIAIKQYAPFLDANLYPMLSYSSIILL 684 (691)
Q Consensus 613 lVv~N~~~~~~-~v~lp~~~g~~w~~l~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~ 684 (691)
++++|++.... .+.++.+.+++|+++++|+.....+... ..++ ..+..........+..++|||++++||.
T Consensus 554 v~~~n~~~~~~~~y~~~~~~~g~~~~~lntd~~~~ggs~~~~~~~~-~~~~~~~~~~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 554 VVVNNFTPVPRVDYRVGVPVAGRWREVLNTDLAEYGGSGAGNLGLP-VSGEDILWHGREWSLSLTLPPLAALVLK 627 (628)
T ss_pred EEEeCCCCCcccccccCCcccccEEEeccchHHHhcCCccccccce-ecceeeeccCcceeeEEecCCceeeEee
Confidence 88888888554 4555554456999999997655444321 1111 1111100011133678899999999986
No 19
>PLN02960 alpha-amylase
Probab=100.00 E-value=1.8e-49 Score=447.82 Aligned_cols=457 Identities=18% Similarity=0.203 Sum_probs=275.4
Q ss_pred CCeEEEEEcCCCCCceEEEEEcCccCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCC--CCCCC
Q 005552 148 GDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTP--EDEFD 225 (691)
Q Consensus 148 ~gvW~~~v~g~~~g~~Y~y~i~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~ 225 (691)
+|.|+.+||++.+|++|+|+|+.. +| .....||||+++..... .+ ..++++.++ ..+|.
T Consensus 324 ~gw~~~~ip~~~hG~~Yky~v~~~----~g-----~~~~vdpyA~~~qp~~~---~~-------~~~~v~~d~~~~~~y~ 384 (897)
T PLN02960 324 KAWLKKYIPAIPHGSKYRVYFNTP----DG-----PLERVPAWATYVLPDPD---GK-------QWYAIHWEPPPEEAYK 384 (897)
T ss_pred CcEEEEEccCCCCCCEEEEEEEeC----CC-----ceEECCCcceeEeecCC---Cc-------cceEEEeCCCCCCCCC
Confidence 455556666677777777777532 11 12468999988743211 11 123444453 25799
Q ss_pred CCCCCCCCCCCCCceEEEEeecCccccCCCCCCCCcchhccccc-cccc-------------------------------
Q 005552 226 WEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEK-LDHL------------------------------- 273 (691)
Q Consensus 226 W~~~~~~~~~~~~~vIYElHVr~Ft~~~~~~~~~~Gtf~g~~ek-LdyL------------------------------- 273 (691)
|+++.+ ..++++||||+|||+|+.+. ..|||++++++ ||||
T Consensus 385 W~~~~p--~~~~~~vIYElHvg~~~~e~-----~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa 457 (897)
T PLN02960 385 WKFERP--KVPKSLRIYECHVGISGSEP-----KISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFA 457 (897)
T ss_pred CCCCCC--CCCCCcEEEEEecccccCCC-----CCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCC
Confidence 988743 25579999999999987532 25899999987 9998
Q ss_pred ---------------------------------------------CC---cccc------ccCccC-cCCCCCHHHHHHH
Q 005552 274 ---------------------------------------------KG---EFYN------YSGCGN-TFNCNHPVVRQFI 298 (691)
Q Consensus 274 ---------------------------------------------~g---~y~n------~sg~g~-dln~~~p~vr~~i 298 (691)
+| .||. .+.||. .||+++++||+||
T Consensus 458 ~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fL 537 (897)
T PLN02960 458 VSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFL 537 (897)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHH
Confidence 11 1332 123554 4799999999999
Q ss_pred HHHHHHHHHhccccEEEEeccccccccCcccccccccCc-ccccccccCCCCCCChhHHHHHhc--CCCCCCcEEEeecC
Q 005552 299 VDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGI-PIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAW 375 (691)
Q Consensus 299 id~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~-~~~~~~~~~g~~~~~~~~~~~i~~--dp~~~~~~liaE~w 375 (691)
+++++||++||||||||||+++.|..-..... +..|. .|..... .......+++.+.. +...+++++|||.+
T Consensus 538 lsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~--~~~G~~~~~~n~~---~d~~Ai~fL~~lN~~v~~~~P~vilIAEds 612 (897)
T PLN02960 538 LSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFA--SFTGDLDEYCNQY---VDRDALIYLILANEMLHQLHPNIITIAEDA 612 (897)
T ss_pred HHHHHHHHHHHCCCceeecccceeeeeccCcc--ccCCcccccCCcc---CCchHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 99999999999999999999998754211000 00000 0001100 11222234433321 12356999999986
Q ss_pred CCC-CcccccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCCCCc-----
Q 005552 376 DTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFS----- 449 (691)
Q Consensus 376 ~~~-~~~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~r----- 449 (691)
... ++.....-.++||++.||..+++.+..+++.... ...-...+.++.. + ....+.+.|+|++|||++.
T Consensus 613 s~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~-r~~~~~~l~~s~~-~--~~~~~~~~v~Y~EnHDQVv~Gkrs 688 (897)
T PLN02960 613 TFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPD-QEWSMSKIVSTLV-K--NKENADKMLSYAENHNQSISGGKS 688 (897)
T ss_pred CCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcC-CCCChhccEeeec-c--CcCCcceEEEEecCcCccccCccc
Confidence 543 2211112235789999999999998888865321 1101123443322 1 2346678999999999942
Q ss_pred hhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHH----HHHHHHHHHHHHhcCCceeEecCCccccCC
Q 005552 450 LADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLR----RRQMRNFFLCLMVSQGVPMISMGDEYGHTK 525 (691)
Q Consensus 450 l~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r----~~~~k~a~a~lltspGiP~iy~G~E~g~~~ 525 (691)
+.+++. |... .++ ... +.. .+| .++++ ++++++ +||+||+|||+|||+..
T Consensus 689 l~~rL~---------g~~~-------~k~-~~~-----~~~--~lRa~al~~~~r-llt~~~-~Pg~pLlFMG~EFGh~e 742 (897)
T PLN02960 689 FAEILL---------GKNK-------ESS-PAV-----KEL--LLRGVSLHKMIR-LITFTL-GGSAYLNFMGNEFGHPE 742 (897)
T ss_pred HHHHCC---------Cchh-------hhh-ccc-----Chh--hhhhhhHHHHHH-HHHHHh-CCCCCEeeCccccCChh
Confidence 232221 1110 001 000 000 011 12222 234444 49999999999999865
Q ss_pred CC------CCCCCCCCCCccccccCcccc-cchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCc
Q 005552 526 GG------NNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSR 598 (691)
Q Consensus 526 ~g------~~n~y~~~~~~~~~~W~~~~~-~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~ 598 (691)
.. ++.+| ....++|+..+. .+..+++|+|+|++||+++|+|+.+.. |... .+++++
T Consensus 743 ~~~~PdP~n~~tf----~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~-------~i~~------~d~~~~ 805 (897)
T PLN02960 743 RVEFPRASNNFSF----SLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLP-------NIHH------VNDTSM 805 (897)
T ss_pred hhhCcCCCCcccc----ccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcc-------eeee------ecCCCC
Confidence 22 11221 235799998764 358999999999999999999975432 2211 245678
Q ss_pred EEEEEEEccCCCEEEEEEeCCCCc--EEEEcCCCCCCceEEEecCCCCCCCCCcCCCCch-h-HHHhhhcCCCCCCceEE
Q 005552 599 FVAFTLIDSVKGEIYVAFNASHLP--VIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPA-K-EIAIKQYAPFLDANLYP 674 (691)
Q Consensus 599 vlaf~r~~~~~~~llVv~N~~~~~--~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 674 (691)
||+|.| +.++||+||++.. ..+.+..+..+.|++|+||+...+++........ . .+...+..+...+..++
T Consensus 806 Viaf~R-----~~llvV~NFsp~~~~~~Y~vgvP~~G~y~eilNSD~~~yGG~g~~~~~~~~~~t~~~~~~g~~~si~i~ 880 (897)
T PLN02960 806 VISFTR-----GPLLFAFNFHPTNSYEEYEVGVEEAGEYELILNTDEVKYGGQGRLTEDQYLQRTKSKRIDGLRNCLELT 880 (897)
T ss_pred EEEEEe-----CCeEEEEeCCCCCcCcCceECCCCCCcEEEEEeCchhhcCCCCccCCCcceeeccccccCCCCceEEEE
Confidence 999999 3599999999852 2233333334599999999987654432221111 0 01112233445678899
Q ss_pred eeCCeEEEEEecC
Q 005552 675 MLSYSSIILLLSP 687 (691)
Q Consensus 675 l~p~s~~Vl~~~~ 687 (691)
|||++++||++..
T Consensus 881 LPp~sa~v~k~~~ 893 (897)
T PLN02960 881 LPSRSAQVYKLAR 893 (897)
T ss_pred eCCCEEEEEEEee
Confidence 9999999998753
No 20
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1.9e-42 Score=383.13 Aligned_cols=464 Identities=16% Similarity=0.138 Sum_probs=292.4
Q ss_pred CCCeEEEEEcCCCCCceEEEEEcCccCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCC--CCC
Q 005552 147 TGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPE--DEF 224 (691)
Q Consensus 147 ~~gvW~~~v~g~~~g~~Y~y~i~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~ 224 (691)
.+|.|...++.+.||..|+..+..+ +|. ...+.+|++.++....-. .+.+++++|+ ..|
T Consensus 328 ~~~w~~~~~~~i~H~s~~k~~~~~~----~g~-----~~RiPaw~~~~~~~~~~~----------~~~~~~w~P~~~~~y 388 (872)
T PLN03244 328 RKAWLKKYIPAIPHGSKYRLYFNTP----DGP-----LERIPAWATYVLPDDDGK----------QAFAIHWEPPPEAAH 388 (872)
T ss_pred cCceeecccCCCCCCCeEEEEEEcC----CCC-----cccCCCCeeeEEecCCCC----------ceeeeEeCCCcccCC
Confidence 5688999999999999999998743 232 245788888887542111 2345677754 359
Q ss_pred CCCCCCCCCCCCCCceEEEEeecCccccCCCCCCCCcchhccccccccc-------------------------------
Q 005552 225 DWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHL------------------------------- 273 (691)
Q Consensus 225 ~W~~~~~~~~~~~~~vIYElHVr~Ft~~~~~~~~~~Gtf~g~~ekLdyL------------------------------- 273 (691)
.|++.+++ .+..+.|||+|||..+..+. .|||+.+++++...
T Consensus 389 ~~k~~~p~--~p~~lrIYE~HvGms~~e~k-----v~ty~eF~~~vt~fFApssRYGTPeDLK~LVD~aH~~GI~VILDv 461 (872)
T PLN03244 389 KWKNMKPK--VPESLRIYECHVGISGSEPK-----ISSFEEFTEKVTNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDI 461 (872)
T ss_pred ccCCCCCC--CCCCceEEEEEeeecCCCCC-----cccHHHHhhccCcccccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 99987543 34788999999999988665 48899988874322
Q ss_pred ----------------CC---cccc------ccCcc-CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCc
Q 005552 274 ----------------KG---EFYN------YSGCG-NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSS 327 (691)
Q Consensus 274 ----------------~g---~y~n------~sg~g-~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~ 327 (691)
+| .||. ...|| +.||+.+++||+||+++++||++||||||||||++..|..-..
T Consensus 462 V~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~ 541 (872)
T PLN03244 462 VHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHN 541 (872)
T ss_pred cCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeecc
Confidence 11 2332 11244 4699999999999999999999999999999999988864321
Q ss_pred ccccccccCcccccccccCCCCCCChhHHHHHhc--CCCCCCcEEEeecCCCC-CcccccCCCCCcccceecCcccHHHH
Q 005552 328 LWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVR 404 (691)
Q Consensus 328 ~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--dp~~~~~~liaE~w~~~-~~~~~~~fp~~g~~~~wn~~f~d~~r 404 (691)
....+.. ...|.... .....+..++..+.. ....|++++|||..+.. ++...-.-.++||++.||+.+++...
T Consensus 542 G~~~f~g-~~~~y~n~---~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwmdd~l 617 (872)
T PLN03244 542 GFASFNG-DLDDYCNQ---YVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWL 617 (872)
T ss_pred ccccccC-Cccccccc---cCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcchHHHH
Confidence 1111100 00011000 011222223332211 12456999999986532 22211123457899999999999999
Q ss_pred HHHcCCCCcHH---HHHHHHcCCCccccCCCCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccC
Q 005552 405 QFIKGTDGFAG---AFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCG 481 (691)
Q Consensus 405 ~~~~g~~~~~~---~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g 481 (691)
.+++-...... .+...|.. +.+.....++|.||||++-..|+... ....+... .++.+
T Consensus 618 kylk~~pderw~~~~ItfsL~~-------nrr~~ek~~aYsESHDqaLvGdKTla----f~l~d~~~--------y~~~~ 678 (872)
T PLN03244 618 DFLDNIPDHEWSMSKIVSTLIA-------NKEYADKMLSYAENHNQSISGGRSFA----EILFGAID--------EDPLG 678 (872)
T ss_pred HHHHhCCCcccCHHHHhhhhhc-------ccCCcceEEEEecccceeccccchHH----hhhccccc--------ccccc
Confidence 99876543322 22222211 12234578999999999532221110 00111100 01110
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHhcCCce-eEecCCccccCCC------CCCCCCCCCCCccccccCcccc-cchhH
Q 005552 482 QEGEFANILVKKLRRRQMRNFFLCLMVSQGVP-MISMGDEYGHTKG------GNNNTYCHDNDINYFRWDKKEE-SKSDF 553 (691)
Q Consensus 482 ~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP-~iy~G~E~g~~~~------g~~n~y~~~~~~~~~~W~~~~~-~~~~l 553 (691)
. +..+. .+.+..||+.+++++++|.| |+|||+|||+... ||+.+|. ..+++|+..+. .++.|
T Consensus 679 -~----~~vv~-Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~----~arrdW~Lld~~~hk~L 748 (872)
T PLN03244 679 -G----KELLD-RGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFS----LANRCWDLLENEVHHHL 748 (872)
T ss_pred -c----chhhh-hhhHHHHHHHHHHHHccCccceeecccccCCchheeccccCCCcccc----ccccCccccCChhHHHH
Confidence 0 01111 12335566777789999987 7999999999763 4555442 34679998764 25889
Q ss_pred HHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEeCCCC-cE-EEEcCCCC
Q 005552 554 FRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHL-PV-IISLPKRP 631 (691)
Q Consensus 554 ~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N~~~~-~~-~v~lp~~~ 631 (691)
.+|+|+|++|++++++|..+. .|... .+++++||||.|. .++||+||++. +. .+.|..+.
T Consensus 749 ~~FdrdLn~Ly~~~~aL~~gf-------~wI~~------~d~e~kVIAF~R~-----~LLfVfNF~P~~sy~dYrIGVp~ 810 (872)
T PLN03244 749 FSFDKDLMDLDENEGILSRGL-------PNIHH------VKDAAMVISFMRG-----PFLFIFNFHPSNSYEGYDVGVEE 810 (872)
T ss_pred HHHHHHHHHHHhcCcccccCC-------cEEee------ecCCCCEEEEEec-----CEEEEEeCCCCCCccCCEECCCC
Confidence 999999999999999997442 23221 2466789999993 59999999985 33 45555544
Q ss_pred CCceEEEecCCCCCCCCCcCCCCchhHH--HhhhcCCCCCCceEEeeCCeEEEEEecC
Q 005552 632 GYRWEPLVDTSKPEPFDFLSSDLPAKEI--AIKQYAPFLDANLYPMLSYSSIILLLSP 687 (691)
Q Consensus 632 g~~w~~l~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~p~s~~Vl~~~~ 687 (691)
.+.|++++||+...++|..........+ ..........+..++|||++++||++..
T Consensus 811 ~G~Y~eILNSD~~~FGG~g~~~~~~~~t~~~~~~~~gr~~sl~l~LPprsavVlk~~~ 868 (872)
T PLN03244 811 AGEYQIILNSDETKYGGQGIIEEDHYLQRSINKRIDGLRNCLEVFLPSRTAQVYKLSR 868 (872)
T ss_pred CCeEEEEEeCChhhhCCCCccCCCceeecccccccCCCCceEEEEeCCCEEEEEEEee
Confidence 5699999999988766653322111111 1111233456778999999999998754
No 21
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=3.1e-38 Score=360.07 Aligned_cols=253 Identities=18% Similarity=0.241 Sum_probs=179.0
Q ss_pred cCcCCCCCHHHHHHHHH----HHHHHHHh-ccccEEEEecccccccc------CcccccccccCcccccccccCCCCCCC
Q 005552 284 GNTFNCNHPVVRQFIVD----CLRYWVTE-MHVDGFRFDLASIMTRG------SSLWDSVNVYGIPIEGDLLTTGTPLRS 352 (691)
Q Consensus 284 g~dln~~~p~vr~~iid----~l~yWl~e-ygVDGFRfD~~~~i~~~------~~~w~~~~~~g~~~~~~~~~~g~~~~~ 352 (691)
.++||++||+||++|++ +++||+++ |||||||+|+|..+.+. ..||+.
T Consensus 297 lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~--------------------- 355 (598)
T PRK10785 297 LPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAG--------------------- 355 (598)
T ss_pred CccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHH---------------------
Confidence 36899999999999995 89999986 99999999999888642 123332
Q ss_pred hhHHHHHhcCCCCCCcEEEeecCCCCCcccccCCCCCcccceecC-cccHHHHHHHcCCC-------CcHHHHHHHHcCC
Q 005552 353 PPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNG-KYRDIVRQFIKGTD-------GFAGAFAECLCGS 424 (691)
Q Consensus 353 ~~~~~~i~~dp~~~~~~liaE~w~~~~~~~~~~fp~~g~~~~wn~-~f~d~~r~~~~g~~-------~~~~~~~~~l~g~ 424 (691)
+.+.+++ ..+++++|||.|.....+..+ -++++.+|. .|...++.++.+.. .....+...+...
T Consensus 356 --~~~~vk~--~~pd~~ligE~~~~~~~~l~~----~~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 427 (598)
T PRK10785 356 --ITQAAKE--ENPEAYVLGEHFGDARQWLQA----DVEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEY 427 (598)
T ss_pred --HHHHHHh--hCCCeEEEEeccCChhhhccC----ccccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHH
Confidence 2333322 345999999998653211111 124556664 57778888876532 1123444433321
Q ss_pred CccccCCCCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHH
Q 005552 425 PNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFL 504 (691)
Q Consensus 425 ~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a 504 (691)
...+.. ......+||++|||+.|+...+. + ..+++|+|++
T Consensus 428 ~~~~~~--~~~~~~~n~l~nHD~~R~~~~~~---------~-----------------------------~~~~~kla~~ 467 (598)
T PRK10785 428 RAGLPH--QQQLRQFNQLDSHDTARFKTLLG---------G-----------------------------DKARMPLALV 467 (598)
T ss_pred HHhCCH--HHHHHhhhccCCCccchhhhhhC---------C-----------------------------CHHHHHHHHH
Confidence 111110 01123568999999999766542 0 0346788999
Q ss_pred HHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEec
Q 005552 505 CLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWH 584 (691)
Q Consensus 505 ~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~ 584 (691)
++||+||+|+||||||+|+++.. + ++.|.+|+|+....+ .++++|||+||+|||++|+|+.|++...
T Consensus 468 ll~t~pGiP~IYYGdE~G~~g~~--d----p~~R~~m~W~~~~~~-~~l~~~~r~Li~lRk~~~aL~~G~~~~l------ 534 (598)
T PRK10785 468 WLFTWPGVPCIYYGDEVGLDGGN--D----PFCRKPFPWDEAKQD-GALLALYQRMIALRKKSQALRRGGCQVL------ 534 (598)
T ss_pred HHHhCCCCcEEEeeeeccccCCC--C----CCccCCcCCCcccCc-hHHHHHHHHHHHHHhhCcccccCcEEEE------
Confidence 99999999999999999998642 2 335678999876555 7999999999999999999999876431
Q ss_pred cCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEeCCCCcEEEEcCC
Q 005552 585 GHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPK 629 (691)
Q Consensus 585 ~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp~ 629 (691)
..++.+++|.|..+ ++.++|++|++ +.+++.||.
T Consensus 535 ---------~~~~~v~af~R~~~-~~~vlVviN~s-~~~~v~lp~ 568 (598)
T PRK10785 535 ---------YAEGNVVVFARVLQ-QQRVLVAINRG-EACEVVLPA 568 (598)
T ss_pred ---------EeCCCEEEEEEECC-CCEEEEEEECC-CCeEEeccc
Confidence 12357999999876 48999999999 678888886
No 22
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=3.1e-38 Score=356.54 Aligned_cols=316 Identities=17% Similarity=0.213 Sum_probs=199.0
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcC-
Q 005552 284 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND- 362 (691)
Q Consensus 284 g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d- 362 (691)
+++||++||+||++|+++++||+ ++||||||||++.+|.+...+++.... .+.......+. ...+++.++..
T Consensus 161 ~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~-----~~~~~~~~~~~-~~~f~~~~~~~~ 233 (543)
T TIGR02403 161 QADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIG-----DGRRFYTDGPR-VHEYLQEMNQEV 233 (543)
T ss_pred CCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCC-----CCccccCCChH-HHHHHHHHHHHh
Confidence 57899999999999999999999 689999999999999765444432100 00000011110 11234433210
Q ss_pred CCCCCcEEEeecCCCCCcccccCC---CCCcccceecCcccHHHHHHHcCCC-----CcHHHHHHHHcCCCccccCCCCC
Q 005552 363 PILRGVKLIAEAWDTGGLYQVGIF---PHWGIWSEWNGKYRDIVRQFIKGTD-----GFAGAFAECLCGSPNLYQGGGRK 434 (691)
Q Consensus 363 p~~~~~~liaE~w~~~~~~~~~~f---p~~g~~~~wn~~f~d~~r~~~~g~~-----~~~~~~~~~l~g~~~~~~~~~~~ 434 (691)
...+++++|||.|+... .....+ ..-.+++.+| |......+..+.. .....+...+......+. ..
T Consensus 234 ~~~~~~~lvgE~~~~~~-~~~~~y~~~~~~~~d~~~n--f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~ 307 (543)
T TIGR02403 234 FGDNDSVTVGEMSSTTI-ENCIRYSNPENKELSMVFT--FHHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQ---AG 307 (543)
T ss_pred hccCCeEEEEEeCCCCH-HHHHhhhCCCCCeeCeEEC--hhhhhchhccccccccCCCCHHHHHHHHHHHHHhcc---cc
Confidence 01348999999986421 000001 0112455565 4444444443321 112233332211111111 01
Q ss_pred CCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcee
Q 005552 435 PWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPM 514 (691)
Q Consensus 435 p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~ 514 (691)
....++|++|||+.|+...+. ... ..+.+.+|++++++||+||+||
T Consensus 308 ~~~~~~fl~NHD~~R~~s~~g--------------------------~~~--------~~~~~~~k~~a~ll~tlpG~P~ 353 (543)
T TIGR02403 308 GGWNALFWNNHDQPRAVSRFG--------------------------DDG--------EYRVESAKMLAAAIHLLRGTPY 353 (543)
T ss_pred CcceeeecCCCChhhHHHhcC--------------------------Cch--------hhHHHHHHHHHHHHHHCCCCeE
Confidence 224456999999999766542 000 1123457788889999999999
Q ss_pred EecCCccccCCCCCC-------------------------------CCCCCCCCccccccCccc----------------
Q 005552 515 ISMGDEYGHTKGGNN-------------------------------NTYCHDNDINYFRWDKKE---------------- 547 (691)
Q Consensus 515 iy~G~E~g~~~~g~~-------------------------------n~y~~~~~~~~~~W~~~~---------------- 547 (691)
||||||+|+++.... +.-.+++.|.+|+|+...
T Consensus 354 IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~ 433 (543)
T TIGR02403 354 IYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATN 433 (543)
T ss_pred EEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCC
Confidence 999999999874210 012345678999998642
Q ss_pred ----------ccchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEe
Q 005552 548 ----------ESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFN 617 (691)
Q Consensus 548 ----------~~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N 617 (691)
.+..++++|||+||+|||++|+|+.|++... ...+++|++|.|..+ ++.++||+|
T Consensus 434 ~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~--------------~~~~~~v~a~~R~~~-~~~~lVv~N 498 (543)
T TIGR02403 434 YKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFL--------------LPDDPSVWAYTRTYK-NQKLLVINN 498 (543)
T ss_pred ccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEe--------------ecCCCcEEEEEEEcC-CcEEEEEEE
Confidence 1237899999999999999999999886541 112347999999877 489999999
Q ss_pred CCCCcEEEEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEE
Q 005552 618 ASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILL 684 (691)
Q Consensus 618 ~~~~~~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~ 684 (691)
++.+++++.||... ..|++++.+.... .....++|+|++++|+.
T Consensus 499 ~s~~~~~~~l~~~~-~~~~~~~~~~~~~----------------------~~~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 499 FYGEEKTIELPLDL-LSGKILLSNYEEA----------------------EKDAKLELKPYEAIVLL 542 (543)
T ss_pred CCCCCeEeeCCccC-cCceEEEecCCCc----------------------CCCCcEEECCceEEEEe
Confidence 99999999998653 3577777663211 00156899999999985
No 23
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.6e-37 Score=350.24 Aligned_cols=318 Identities=17% Similarity=0.235 Sum_probs=202.3
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcCC
Q 005552 284 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDP 363 (691)
Q Consensus 284 g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~dp 363 (691)
.++||++||+||++|+++++||+ ++||||||||+|.++.+...||+.... .+ ..+....+. ...+++.+...-
T Consensus 168 ~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~---~~--~~~~~~~~~-~~~~l~~~~~~~ 240 (551)
T PRK10933 168 QADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDG---DG--RRFYTDGPR-AHEFLQEMNRDV 240 (551)
T ss_pred CCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCccc---cc--ccccCCChH-HHHHHHHHHHHh
Confidence 56999999999999999999999 799999999999999877666653210 00 000011110 123455443321
Q ss_pred -CCCCcEEEeecCCCCCcccccCC---CCCcccceecCcccHHHHHHHcCCCC-----cHHHHHHHHcCCCccccCCCCC
Q 005552 364 -ILRGVKLIAEAWDTGGLYQVGIF---PHWGIWSEWNGKYRDIVRQFIKGTDG-----FAGAFAECLCGSPNLYQGGGRK 434 (691)
Q Consensus 364 -~~~~~~liaE~w~~~~~~~~~~f---p~~g~~~~wn~~f~d~~r~~~~g~~~-----~~~~~~~~l~g~~~~~~~~~~~ 434 (691)
..+++++|||.|...- ..+..+ .+-.++..|| |......+..|... ....+...+..-...+ ..
T Consensus 241 ~~~~~~~~vgE~~~~~~-~~~~~y~~~~~~~~~~~fn--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 313 (551)
T PRK10933 241 FTPRGLMTVGEMSSTSL-EHCQRYAALTGSELSMTFN--FHHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGM----HN 313 (551)
T ss_pred hcccCcEEEEeecCCCH-HHHHHhhcccCCeeeeEec--HHHhhhhhccCCcccccccCHHHHHHHHHHHHHhh----cc
Confidence 1236789999985321 011111 1111333444 44444444444221 1122322221100001 01
Q ss_pred CCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcee
Q 005552 435 PWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPM 514 (691)
Q Consensus 435 p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~ 514 (691)
.....+|++|||+.|+.+.+. .+. ..+.+.+|++++++||+||+|+
T Consensus 314 ~~~~~~fl~NHD~~R~~sr~g--------------------------~~~--------~~~~~~aklla~ll~tlpG~P~ 359 (551)
T PRK10933 314 VAWNALFWCNHDQPRIVSRFG--------------------------DEG--------EYRVPAAKMLAMVLHGMQGTPY 359 (551)
T ss_pred cCeeccccCCCCcccHHHHcC--------------------------Cch--------hHHHHHHHHHHHHHHhCCCceE
Confidence 123456999999999766542 110 1234567888899999999999
Q ss_pred EecCCccccCCCCCC----------------------C---------CCCCCCCccccccCcccc---------------
Q 005552 515 ISMGDEYGHTKGGNN----------------------N---------TYCHDNDINYFRWDKKEE--------------- 548 (691)
Q Consensus 515 iy~G~E~g~~~~g~~----------------------n---------~y~~~~~~~~~~W~~~~~--------------- 548 (691)
||||||+|+++.... + .-.++..|.+|+|+....
T Consensus 360 IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~ 439 (551)
T PRK10933 360 IYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDN 439 (551)
T ss_pred EEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcc
Confidence 999999999873100 0 013556799999987531
Q ss_pred -----------cchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEe
Q 005552 549 -----------SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFN 617 (691)
Q Consensus 549 -----------~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N 617 (691)
+..++++|||+||+|||++|+|..|++... ....+.|++|.|..+ ++.++||+|
T Consensus 440 ~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~--------------~~~~~~v~af~R~~~-~~~~lvv~N 504 (551)
T PRK10933 440 YQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDL--------------LPNHPSLWCYRREWQ-GQTLLVIAN 504 (551)
T ss_pred cccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEe--------------ccCCCcEEEEEEEcC-CcEEEEEEE
Confidence 236799999999999999999999986531 112357999999876 489999999
Q ss_pred CCCCcEEEEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEEec
Q 005552 618 ASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLS 686 (691)
Q Consensus 618 ~~~~~~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~~~ 686 (691)
++.+++.+.++.. .+.|+.++.+.... . .....++|+|++++|+..+
T Consensus 505 ~s~~~~~~~~~~~-~~~~~~~l~~~~~~----~-----------------~~~~~~~L~p~~~~~~~~~ 551 (551)
T PRK10933 505 LSREPQPWQPGQM-RGNWQLLMHNYEEA----S-----------------PQPCAMTLRPFEAVWWLQK 551 (551)
T ss_pred CCCCCeeeecCcc-cCCceEEeecCccc----c-----------------CCCCcEEECCCeEEEEEeC
Confidence 9999999988843 34788888762110 0 0113589999999999864
No 24
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=1.2e-36 Score=344.37 Aligned_cols=331 Identities=17% Similarity=0.198 Sum_probs=189.0
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCC---hhHHHHHh
Q 005552 284 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRS---PPLIDLIS 360 (691)
Q Consensus 284 g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~---~~~~~~i~ 360 (691)
+++||++||+||++|+++++||+ ++||||||||++.++.+.... . . ...+... ..+.+.++
T Consensus 165 ~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~--~-------~------~~~p~~~~f~~~~~~~v~ 228 (539)
T TIGR02456 165 QPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGT--S-------C------ENLPETHEFLKRLRKMVD 228 (539)
T ss_pred CCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCC--c-------c------CCCchHHHHHHHHHHHHH
Confidence 57899999999999999999999 599999999999988542100 0 0 0000000 11223332
Q ss_pred cCCCCCCcEEEeecCCCCCc--ccccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCce
Q 005552 361 NDPILRGVKLIAEAWDTGGL--YQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNS 438 (691)
Q Consensus 361 ~dp~~~~~~liaE~w~~~~~--~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~ 438 (691)
. ..+++++|||.|..... ...+.....++++.+|..+...+...+... ....+...+..... + ..+...
T Consensus 229 ~--~~p~~~~iaE~~~~~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~--~~~~l~~~l~~~~~-~----~~~~~~ 299 (539)
T TIGR02456 229 R--EYPGRMLLAEANQWPEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRRE--DRSPIIDILKETPD-I----PDSCQW 299 (539)
T ss_pred H--hCCCeEEEEEeCCCHHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccC--CHHHHHHHHHHhhh-c----cCCCce
Confidence 2 23599999997532110 000111111345556655544332222111 12233333322111 1 122345
Q ss_pred EEEeecCCCCchhhhhhhcccccc--ccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEe
Q 005552 439 INFVCAHDGFSLADLVSYNQKHNL--ANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMIS 516 (691)
Q Consensus 439 vnyl~nHD~~rl~d~~~~~~k~n~--~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy 516 (691)
++|++|||+.|+. .++-...... ..+. ++....+.+..... .+......+++|++++++||+||+|+||
T Consensus 300 ~~fl~nHD~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~R~--~s~~~~~~~~~kla~~~l~tlpG~P~IY 370 (539)
T TIGR02456 300 CIFLRNHDELTLE-MVTDEERDFMYAAYAP------DPRMRINLGIRRRL--APLLDNDRRRIELLTALLLSLPGSPILY 370 (539)
T ss_pred eeecCCCCccCcc-ccChhhhhhhhhhccC------Ccchhcccchhhhh--hhcccccHHHHHHHHHHHHhCCCceEEE
Confidence 6799999997632 1100000000 0000 00000000000000 0000001346889999999999999999
Q ss_pred cCCccccCCCCCCCCCCCCCCccccccCccc---------------------------------ccchhHHHHHHHHHHH
Q 005552 517 MGDEYGHTKGGNNNTYCHDNDINYFRWDKKE---------------------------------ESKSDFFRFCCLLTKF 563 (691)
Q Consensus 517 ~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~---------------------------------~~~~~l~~f~r~Li~L 563 (691)
||+|+|+.+... ....+..|.+|+|+... ....++++|||+||+|
T Consensus 371 YG~EiGm~~~~~--~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~l 448 (539)
T TIGR02456 371 YGDEIGMGDNIW--LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHV 448 (539)
T ss_pred echhhcCcCCCc--cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHH
Confidence 999999975311 11123456789997531 1236799999999999
Q ss_pred HHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEeCCCCcEEEEcCCCC--CCceEEEecC
Q 005552 564 RHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRP--GYRWEPLVDT 641 (691)
Q Consensus 564 Rk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp~~~--g~~w~~l~~t 641 (691)
||++|+|+.|++... ...++++++|.|..+ ++.++||+|++.++++++|+... +..+..++.+
T Consensus 449 Rk~~~aL~~G~~~~l--------------~~~~~~v~~f~R~~~-~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~dl~~~ 513 (539)
T TIGR02456 449 RKAHPAFGRGSLTFL--------------PTGNRRVLAFLREYE-GERVLCVFNFSRNPQAVELDLSEFAGRVPVELIGG 513 (539)
T ss_pred HhcCcccccCceEEE--------------ecCCCCEEEEEEEcC-CcEEEEEEeCCCCCEEeeccccccccCcceecccC
Confidence 999999999876541 112347999999877 48999999999999999887642 3345555543
Q ss_pred CCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEEE
Q 005552 642 SKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILL 684 (691)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl~ 684 (691)
.... . .. .....++|+|+++++|.
T Consensus 514 ~~~~-----~------------~~--~~~~~~~l~p~~~~~~~ 537 (539)
T TIGR02456 514 APFP-----P------------VG--GDGYLLTLGPHGFYWFR 537 (539)
T ss_pred Cccc-----c------------cc--CCcceEEECCceEEEEE
Confidence 2110 0 00 12257899999999986
No 25
>PRK09505 malS alpha-amylase; Reviewed
Probab=99.97 E-value=1.1e-31 Score=305.39 Aligned_cols=243 Identities=17% Similarity=0.285 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcCCC----CC
Q 005552 291 HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPI----LR 366 (691)
Q Consensus 291 ~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~dp~----~~ 366 (691)
||+||++|+++++||+++|||||||+|++.++.. .||..++... ...+.+..+..|. .+
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~--~FW~~~~~~~---------------~~~l~~~k~~~~d~~~~~~ 497 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVEL--PAWQQLKQEA---------------SAALAEWKKANPDKALDDA 497 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCH--HHHHHHHHHH---------------HHHHHHHHHhccccccccC
Confidence 5699999999999999999999999999999964 4777643100 0001111122221 23
Q ss_pred CcEEEeecCCCCCcccccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEEeecCC
Q 005552 367 GVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHD 446 (691)
Q Consensus 367 ~~~liaE~w~~~~~~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vnyl~nHD 446 (691)
++++|||.|..+.. ....+. -++++.+|..|+..+...... ...+.......... ......++|++|||
T Consensus 498 ~~~~vGEvw~~~~~-~~~y~~-~~fDsv~NF~~~~~~~~~~~~----~~~l~~~~~~~~~~-----~~~~~~l~FLdNHD 566 (683)
T PRK09505 498 PFWMTGEAWGHGVM-KSDYYR-HGFDAMINFDYQEQAAKAVDC----LAQMDPTYQQMAEK-----LQDFNVLSYLSSHD 566 (683)
T ss_pred CeEEEEEecCCchh-hHHHHh-hcCccccCchHHHHHHHHHHH----HHHHHHHHHHHhhh-----cCccceeecccCCC
Confidence 68999999964421 111111 257788888887765544321 11111111000000 12235678999999
Q ss_pred CCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCC
Q 005552 447 GFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKG 526 (691)
Q Consensus 447 ~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~ 526 (691)
+.|+.+... . ..++|++++++||+||+|+||||||+|+++.
T Consensus 567 t~Rf~s~~~-------------------------------------~--~~~~klAaall~tlpGiP~IYYGdEiGm~gg 607 (683)
T PRK09505 567 TRLFFEGGQ-------------------------------------S--YAKQRRAAELLLLAPGAVQIYYGDESARPFG 607 (683)
T ss_pred hhhhhhhcC-------------------------------------c--hHHHHHHHHHHHhCCCCcEEEechhhCccCC
Confidence 998754321 0 1356789999999999999999999999763
Q ss_pred CC-CCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEE
Q 005552 527 GN-NNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLI 605 (691)
Q Consensus 527 g~-~n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~ 605 (691)
.. .+. ..+.|..|+|+.......+|++|||+|++||+++|+|+.|++... ..+.+++|.|.
T Consensus 608 ~~g~DP--~~~~R~~M~W~~~~~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l----------------~~~~~~aF~R~ 669 (683)
T PRK09505 608 PTGSDP--LQGTRSDMNWQEVSGKSAALLAHWQKLGQFRARHPAIGAGKQTTL----------------SLKQYYAFVRE 669 (683)
T ss_pred CCCCCC--cccccccCCccccccchHHHHHHHHHHHHHHhhCHHhhCCceEEe----------------ccCCEEEEEEE
Confidence 21 111 123678899986443447899999999999999999999976431 23579999998
Q ss_pred ccCCCEEEEEEeCC
Q 005552 606 DSVKGEIYVAFNAS 619 (691)
Q Consensus 606 ~~~~~~llVv~N~~ 619 (691)
.+ ++.++||+|-.
T Consensus 670 ~~-~d~vlVv~~~~ 682 (683)
T PRK09505 670 HG-DDKVMVVWAGQ 682 (683)
T ss_pred eC-CCEEEEEEeCC
Confidence 77 48999999854
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=99.95 E-value=5.8e-27 Score=262.29 Aligned_cols=274 Identities=15% Similarity=0.198 Sum_probs=177.1
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcCC
Q 005552 284 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDP 363 (691)
Q Consensus 284 g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~dp 363 (691)
.+|||++||+||++|+++++||++++||||||+|++.+|... +|.. +.+.+++.
T Consensus 200 lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~--f~~~-----------------------~~~~~~~~- 253 (479)
T PRK09441 200 GADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAW--FIKE-----------------------WIEHVREV- 253 (479)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHH--HHHH-----------------------HHHHHHHh-
Confidence 589999999999999999999998899999999999999643 4543 33444321
Q ss_pred CCCCcEEEeecCCCCCcccccCCCCC--cccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEE
Q 005552 364 ILRGVKLIAEAWDTGGLYQVGIFPHW--GIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINF 441 (691)
Q Consensus 364 ~~~~~~liaE~w~~~~~~~~~~fp~~--g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vny 441 (691)
..+++++|||.|+.... .+..+-.. +....++..+...++..+.+.. ..++...+... .. ...+...++|
T Consensus 254 ~~~~~~~vGE~~~~~~~-~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~--~~~l~~~~~~~-~~----~~~~~~~~~F 325 (479)
T PRK09441 254 AGKDLFIVGEYWSHDVD-KLQDYLEQVEGKTDLFDVPLHYNFHEASKQGR--DYDMRNIFDGT-LV----EADPFHAVTF 325 (479)
T ss_pred cCCCeEEEEeecCCChH-HHHHHHHhcCCCceEecHHHHHHHHHHHhcCC--ccchHhhhCcc-hh----hcCcccceee
Confidence 12379999999975420 00000000 0224566667777777765421 12333333211 11 1345678999
Q ss_pred eecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcC-CceeEecCCc
Q 005552 442 VCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQ-GVPMISMGDE 520 (691)
Q Consensus 442 l~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltsp-GiP~iy~G~E 520 (691)
++|||..|+..... . ......++|++++||+| |+|+||||+|
T Consensus 326 ldNHD~~R~~~~~~----------~---------------------------~~~~~~~lA~a~llT~p~GiP~IYYGdE 368 (479)
T PRK09441 326 VDNHDTQPGQALES----------P---------------------------VEPWFKPLAYALILLREEGYPCVFYGDY 368 (479)
T ss_pred eccccCCCcccccc----------c---------------------------ccccchHHHHHHHHhCCCCceeeEeccc
Confidence 99999998643210 0 00112468999999999 9999999999
Q ss_pred cccCCCCCCCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEE
Q 005552 521 YGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFV 600 (691)
Q Consensus 521 ~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vl 600 (691)
+|+.+... + ..+++++|+||+|||+++ .|+... +..+++++
T Consensus 369 ~g~~g~~~--------------------~-~~l~~~i~~Li~lRk~~~---~G~~~~---------------~~~~~~~~ 409 (479)
T PRK09441 369 YGASGYYI--------------------D-MPFKEKLDKLLLARKNFA---YGEQTD---------------YFDHPNCI 409 (479)
T ss_pred cCCCCCcc--------------------c-chHHHHHHHHHHHHHHhC---CCCeeE---------------eecCCCEE
Confidence 99864311 1 568999999999999853 444322 12346899
Q ss_pred EEEEEccCC-CEEEEEEeCCCCc-EEEEcCCC-CCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeC
Q 005552 601 AFTLIDSVK-GEIYVAFNASHLP-VIISLPKR-PGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLS 677 (691)
Q Consensus 601 af~r~~~~~-~~llVv~N~~~~~-~~v~lp~~-~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 677 (691)
+|.|..... +.++||+|.+... .+++++.. +++.|+.++...... +.. . + .....++|||
T Consensus 410 ~~~R~~~~~~~~vvvvinn~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~-~-----------~--~G~~~~~l~~ 472 (479)
T PRK09441 410 GWTRSGDEENPGLAVVISNGDAGEKTMEVGENYAGKTWRDYTGNRQET---VTI-D-----------E--DGWGTFPVNG 472 (479)
T ss_pred EEEEecCCCCccEEEEEECCCCCcEEEEeCccCCCCEeEhhhCCCCCe---EEE-C-----------C--CCeEEEEECC
Confidence 999986532 4688888776543 44777653 355687766532210 100 0 0 1235789999
Q ss_pred CeEEEEE
Q 005552 678 YSSIILL 684 (691)
Q Consensus 678 ~s~~Vl~ 684 (691)
.|+.|++
T Consensus 473 ~s~~i~~ 479 (479)
T PRK09441 473 GSVSVWV 479 (479)
T ss_pred ceEEEeC
Confidence 9999984
No 27
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.87 E-value=7.2e-21 Score=207.23 Aligned_cols=293 Identities=13% Similarity=0.092 Sum_probs=175.5
Q ss_pred cccCccCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHH
Q 005552 279 NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDL 358 (691)
Q Consensus 279 n~sg~g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 358 (691)
.|+..++|||+.||+|+++|.++++||+ +.||||||+||++++.+...-- .. ...+. ...+++.
T Consensus 152 tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~-----------c~---~l~pe-t~~~l~~ 215 (470)
T TIGR03852 152 TFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTN-----------DF---FVEPE-IWELLDE 215 (470)
T ss_pred cCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCC-----------cc---cCChh-HHHHHHH
Confidence 6788999999999999999999999999 8999999999999997642100 00 00010 1123333
Q ss_pred HhcCCCCCCcEEEeecCCCCCcccccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCce
Q 005552 359 ISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNS 438 (691)
Q Consensus 359 i~~dp~~~~~~liaE~w~~~~~~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~ 438 (691)
++.--..+++.+|+|.+..- .. +-..|-.+.+++.|.-....+..-..+....+.+++...+ ...
T Consensus 216 ~r~~~~~~~~~ll~E~~~~~---~~--~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~~p----------~~~ 280 (470)
T TIGR03852 216 VRDILAPTGAEILPEIHEHY---TI--QFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRKSP----------MKQ 280 (470)
T ss_pred HHHHhccCCCEEEeHhhhhc---cc--ccccccceeEEccCccchhhHHHhhccCHHHHHHHHHhCc----------ccc
Confidence 33211334999999986321 00 0001223455555655444443222334566777775332 233
Q ss_pred EEEeecCCCCchhh---hhhhccccc-----cccCCCC-------CCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHH
Q 005552 439 INFVCAHDGFSLAD---LVSYNQKHN-----LANGEDN-------NDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFF 503 (691)
Q Consensus 439 vnyl~nHD~~rl~d---~~~~~~k~n-----~~~G~~~-------~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~ 503 (691)
.|||.|||+..|.| +++-.+... ..+|..- .+|....|..||.-- .+... ..++..++.
T Consensus 281 ~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~-----~aL~~-~~~r~~~a~ 354 (470)
T TIGR03852 281 FTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYY-----SALGD-DDQAYLLAR 354 (470)
T ss_pred eEEeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhH-----HHhCC-CHHHHHHHH
Confidence 69999999998743 221111000 0122221 133333333333210 11111 135677899
Q ss_pred HHHHhcCCceeEecCCccccCCCC--C-CCCCCCCCCccccccCccccc---chhHHHHHHHHHHHHHhCccCCC-CCCC
Q 005552 504 LCLMVSQGVPMISMGDEYGHTKGG--N-NNTYCHDNDINYFRWDKKEES---KSDFFRFCCLLTKFRHECESLGL-SDFP 576 (691)
Q Consensus 504 a~lltspGiP~iy~G~E~g~~~~g--~-~n~y~~~~~~~~~~W~~~~~~---~~~l~~f~r~Li~LRk~~paL~~-g~~~ 576 (691)
+++|++||||.||||+|+|+...- . ....++ .+|+-.|+..+-. ...+..-...||++|+++|+|+. |.+.
T Consensus 355 ai~~~lpGiP~iYy~~llg~~nD~~~~~rt~~~R--~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~ 432 (470)
T TIGR03852 355 AIQFFAPGIPQVYYVGLLAGKNDIELLEETKEGR--NINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSID 432 (470)
T ss_pred HHHHcCCCCceEEechhhcCCchHHHHHhcCCCC--CCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceE
Confidence 999999999999999999985421 0 011222 3566666654321 23455555669999999999987 5543
Q ss_pred CCcceEeccCCCCCCCCCCCCcEEEEEEEccC-CCEEEEEEeCCCCcEEE
Q 005552 577 TADRLQWHGHAPGLPDWSDKSRFVAFTLIDSV-KGEIYVAFNASHLPVII 625 (691)
Q Consensus 577 ~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~-~~~llVv~N~~~~~~~v 625 (691)
. ....+.++++.|...+ ++.+++++|++++.+.+
T Consensus 433 ~---------------~~~~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~ 467 (470)
T TIGR03852 433 I---------------ETPSENQIEIVRTNKDGGNKAILTANLKTKTFTI 467 (470)
T ss_pred e---------------cCCCCcEEEEEEEcCCCCceEEEEEecCCCcEec
Confidence 2 1235689999997543 47899999999987554
No 28
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.84 E-value=1.3e-21 Score=207.15 Aligned_cols=174 Identities=27% Similarity=0.487 Sum_probs=107.3
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcC
Q 005552 283 CGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND 362 (691)
Q Consensus 283 ~g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d 362 (691)
..++||++||+||++|+++++||+ +++|||||||+++++... +|+. +...+...
T Consensus 135 ~~~dln~~n~~v~~~i~~~~~~w~-~~giDGfR~D~~~~~~~~--~~~~-----------------------~~~~~~~~ 188 (316)
T PF00128_consen 135 DLPDLNYENPEVREYIIDVLKFWI-EEGIDGFRLDAAKHIPKE--FWKE-----------------------FRDEVKEE 188 (316)
T ss_dssp TSEEBETTSHHHHHHHHHHHHHHH-HTTESEEEETTGGGSSHH--HHHH-----------------------HHHHHHHH
T ss_pred ccchhhhhhhhhhhhhcccccchh-hceEeEEEEccccccchh--hHHH-----------------------Hhhhhhhh
Confidence 346899999999999999999999 666999999999999752 4443 33333221
Q ss_pred CCCCCcEEEeecCCCCCc-ccccCCC-CCcccceecCcccHHHHHH---HcCCCCcHHHHHHHHcCCCccccCCCCCCCc
Q 005552 363 PILRGVKLIAEAWDTGGL-YQVGIFP-HWGIWSEWNGKYRDIVRQF---IKGTDGFAGAFAECLCGSPNLYQGGGRKPWN 437 (691)
Q Consensus 363 p~~~~~~liaE~w~~~~~-~~~~~fp-~~g~~~~wn~~f~d~~r~~---~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~ 437 (691)
.+++++|+|.|..... ....... ........+.......... ..........+...+......+ ..+..
T Consensus 189 --~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 262 (316)
T PF00128_consen 189 --KPDFFLIGEVWGGDNEDLRQYAYDGYFDLDSVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSY----PDPYR 262 (316)
T ss_dssp --HTTSEEEEEESSSSHHHHHHHHHHGTTSHSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHS----TTGGG
T ss_pred --ccccceeeeeccCCccccchhhhccccccchhhcccccccccchhhhhccccchhhhhhhhhhhhhhhh----cccce
Confidence 1489999999876421 0000000 0011111221111122221 2222222333333332111111 12458
Q ss_pred eEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEec
Q 005552 438 SINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISM 517 (691)
Q Consensus 438 ~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~ 517 (691)
.++|++|||+.|+...+.. ...+++++++++||+||+|||||
T Consensus 263 ~~~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~~~ll~~pG~P~iy~ 304 (316)
T PF00128_consen 263 AVNFLENHDTPRFASRFGN--------------------------------------NRDRLKLALAFLLTSPGIPMIYY 304 (316)
T ss_dssp EEEESSHTTSSTHHHHTTT--------------------------------------HHHHHHHHHHHHHHSSSEEEEET
T ss_pred eeecccccccccchhhhcc--------------------------------------cchHHHHHHHHHHcCCCccEEEe
Confidence 8999999999997665420 12267889999999999999999
Q ss_pred CCccccCCC
Q 005552 518 GDEYGHTKG 526 (691)
Q Consensus 518 G~E~g~~~~ 526 (691)
|||+|+++.
T Consensus 305 G~E~g~~~~ 313 (316)
T PF00128_consen 305 GDEIGMTGS 313 (316)
T ss_dssp TGGGTBBTS
T ss_pred ChhccCCCC
Confidence 999999864
No 29
>PLN00196 alpha-amylase; Provisional
Probab=99.84 E-value=2.4e-20 Score=203.56 Aligned_cols=233 Identities=14% Similarity=0.196 Sum_probs=141.5
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcC
Q 005552 283 CGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND 362 (691)
Q Consensus 283 ~g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d 362 (691)
..+|||++||+||++|+++++||++++||||||||+++++... |+ .+.+..
T Consensus 169 ~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~--f~--------------------------~~~v~~- 219 (428)
T PLN00196 169 AAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAE--VA--------------------------KVYIDG- 219 (428)
T ss_pred CCCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHH--HH--------------------------HHHHHc-
Confidence 4689999999999999999999988999999999999988532 11 122222
Q ss_pred CCCCCcEEEeecCCCCCcccccCCC---------------CCc----ccceecCcccHHHHHHHcCCCCcHHHHHHHHcC
Q 005552 363 PILRGVKLIAEAWDTGGLYQVGIFP---------------HWG----IWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCG 423 (691)
Q Consensus 363 p~~~~~~liaE~w~~~~~~~~~~fp---------------~~g----~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g 423 (691)
.. ..++|||.|+.....+.+... ..+ ..+.++......+..++.+.. + .+.+....
T Consensus 220 -~~-p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~~-~--~l~~~~~~ 294 (428)
T PLN00196 220 -TE-PSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGEL-W--RLRGADGK 294 (428)
T ss_pred -cC-CcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCccCcceeecccchHHHHHHhcCCc-h--hhhhhccc
Confidence 12 368999999752100000000 000 001122222221222222110 0 00000000
Q ss_pred CCccccCCCCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHH
Q 005552 424 SPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFF 503 (691)
Q Consensus 424 ~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~ 503 (691)
...+ -...|..+|+||+|||+.|+..... . ....+++|+
T Consensus 295 ~~~~---~~~~P~~aVtFvdNHDT~r~~~~~~----------~----------------------------~~~~~~lAy 333 (428)
T PLN00196 295 APGV---IGWWPAKAVTFVDNHDTGSTQHMWP----------F----------------------------PSDKVMQGY 333 (428)
T ss_pred Ccch---hhcChhhceeeccCCCCccccccCC----------C----------------------------ccchHHHHH
Confidence 0000 1245778999999999998533211 0 012357899
Q ss_pred HHHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEe
Q 005552 504 LCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQW 583 (691)
Q Consensus 504 a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~ 583 (691)
|++||+||+|+||||+ .++|. +.+++++||.+||+++++..|++.. .
T Consensus 334 A~iLT~pG~P~IyYg~--------------------~~~~~--------~~~~i~~Li~~Rk~~~~~~~g~~~~----~- 380 (428)
T PLN00196 334 AYILTHPGNPCIFYDH--------------------FFDWG--------LKEEIAALVSIRNRNGITPTSELRI----M- 380 (428)
T ss_pred HHHHcCCCcceEeeCC--------------------CcCcc--------HHHHHHHHHHHHHhCCCcCCccEEE----E-
Confidence 9999999999999994 13452 3468999999999999999987654 1
Q ss_pred ccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCC
Q 005552 584 HGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTS 642 (691)
Q Consensus 584 ~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp~~~g~~w~~l~~t~ 642 (691)
..++.+++++| ++.++|.+|..-..-.. +|. .|++.+...
T Consensus 381 ----------~a~~d~yv~~~----~~~~~~~i~~~~~~~~~-~~~----~~~~~~~g~ 420 (428)
T PLN00196 381 ----------EADADLYLAEI----DGKVIVKIGSRYDVSHL-IPE----GFQVVAHGN 420 (428)
T ss_pred ----------EecCCEEEEEE----CCEEEEEECCCCCcccc-Ccc----cceEEEecC
Confidence 13457999999 36899999986322111 232 488777653
No 30
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.82 E-value=5.5e-20 Score=166.70 Aligned_cols=101 Identities=52% Similarity=0.910 Sum_probs=86.3
Q ss_pred CeEEeCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCccCCCCCC
Q 005552 99 GATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGH 178 (691)
Q Consensus 99 Ga~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~~~~~~g~ 178 (691)
||++.++|++|+||||+|++|+|+||+. ++...+...++|++..++++|+|+++|+++.+|++|+|+|+|++.|..|+
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~lf~~--~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~~Y~y~v~g~~~p~~g~ 78 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLLFDP--GDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQLYGYRVDGPFEPEQGH 78 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEEEeC--CCCCCceEEEeCcCcccccCCEEEEEECCCCCCCEEEEEECCCCCCCccc
Confidence 8999999999999999999999999864 22223445788875434568999999999999999999999988889999
Q ss_pred ccCCCccccCccccceecccccC
Q 005552 179 YFDPTKIVLDPYAKAVISRAQFG 201 (691)
Q Consensus 179 ~~~~~~~~~DPYA~~~~~~~~~~ 201 (691)
+++++++++||||+++..+..++
T Consensus 79 ~~~~~~~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 79 RFDPSKVLLDPYAKAVSGDEYFG 101 (119)
T ss_pred ccCCCcEEECCCcCeEcCccccC
Confidence 99999999999999998776554
No 31
>PLN02361 alpha-amylase
Probab=99.82 E-value=5.8e-19 Score=190.37 Aligned_cols=194 Identities=15% Similarity=0.232 Sum_probs=121.3
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcC
Q 005552 283 CGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND 362 (691)
Q Consensus 283 ~g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d 362 (691)
..+|||++||+||++|++++++|++++||||||||+++++... ||.. +.+..
T Consensus 145 ~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~~~--f~~~-----------------------~~~~~--- 196 (401)
T PLN02361 145 GVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYSAK--FVKE-----------------------YIEAA--- 196 (401)
T ss_pred cCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCCHH--HHHH-----------------------HHHhh---
Confidence 3689999999999999999997777799999999999999642 4332 22211
Q ss_pred CCCCCcEEEeecCCCCCcccc---cCCC-------------CC-cccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCC
Q 005552 363 PILRGVKLIAEAWDTGGLYQV---GIFP-------------HW-GIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSP 425 (691)
Q Consensus 363 p~~~~~~liaE~w~~~~~~~~---~~fp-------------~~-g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~ 425 (691)
. .+++|||.|+....... .++. .. +..+.++..+...+++.+.+. ..++.+.+...+
T Consensus 197 --~-p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~l~~~l~~a~~~~---~~~l~~~~~~~~ 270 (401)
T PLN02361 197 --K-PLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFTTKGILQEAVKGQ---WWRLRDAQGKPP 270 (401)
T ss_pred --C-CeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHHHHHHHHHHHhhh---HHHHhhhhcCCc
Confidence 1 37899999976311000 0000 00 011222333333333333210 111111111011
Q ss_pred ccccCCCCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHH
Q 005552 426 NLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLC 505 (691)
Q Consensus 426 ~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~ 505 (691)
.+ -+..|..+|+||+|||..|...... ....+.++|+|+
T Consensus 271 ~~---~~~~p~~aVTFvdNHDt~r~~~~~~--------------------------------------~~~~~~~~AyA~ 309 (401)
T PLN02361 271 GV---MGWWPSRAVTFIDNHDTGSTQAHWP--------------------------------------FPSDHIMEGYAY 309 (401)
T ss_pred ch---hhcChhhceEecccCcCcchhhccC--------------------------------------CchHHHHHHHHH
Confidence 11 1245778999999999987432210 012346678999
Q ss_pred HHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCCCCCCC
Q 005552 506 LMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPT 577 (691)
Q Consensus 506 lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~~ 577 (691)
+||.||+|+||||+= ++|+ .++.+++++||.|||++++++.++...
T Consensus 310 iLT~pG~P~Vyyg~~--------------------~~~~------~~~~~~I~~Li~lRk~~~~~~~s~~~i 355 (401)
T PLN02361 310 ILTHPGIPTVFYDHF--------------------YDWG------GSIHDQIVKLIDIRKRQDIHSRSSIRI 355 (401)
T ss_pred HHCCCCcCeEeeccc--------------------cCCC------hHHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence 999999999999871 2443 357899999999999999999887543
No 32
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.81 E-value=1.4e-19 Score=159.54 Aligned_cols=96 Identities=38% Similarity=0.751 Sum_probs=83.0
Q ss_pred CCCeEEeCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCccCCCC
Q 005552 97 PFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQE 176 (691)
Q Consensus 97 ~lGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~~~~~~ 176 (691)
||||++.++|++|+||||+|++|+|+||+.. .. ...++|+ +.++|+|++.++++.+|.+|+|+|+|++.|..
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l~~~~--~~---~~~~~m~---~~~~GvW~~~v~~~~~g~~Y~y~i~g~~~p~~ 72 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCLFDED--GS---ETRLPLT---EEYGGVWHGFLPGIKAGQRYGFRVHGPYDPER 72 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEEEeCC--CC---EEEEEcc---cccCCEEEEEECCCCCCCEEEEEECCccCccc
Confidence 6999999999999999999999999998632 11 2467885 45789999999999999999999999888889
Q ss_pred CCccCCCccccCccccceeccccc
Q 005552 177 GHYFDPTKIVLDPYAKAVISRAQF 200 (691)
Q Consensus 177 g~~~~~~~~~~DPYA~~~~~~~~~ 200 (691)
|+++++...++||||++++.+..+
T Consensus 73 ~~~~~~~~~~~DPYA~~~~~~~~~ 96 (103)
T cd02856 73 GLRFNPAKLLLDPYARALDGPLAY 96 (103)
T ss_pred CcccCCCeEEecCCcceEcCCccC
Confidence 999999999999999999765544
No 33
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.81 E-value=8.2e-19 Score=192.35 Aligned_cols=294 Identities=14% Similarity=0.191 Sum_probs=173.0
Q ss_pred cccCccCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHH
Q 005552 279 NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDL 358 (691)
Q Consensus 279 n~sg~g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 358 (691)
.|+..++|||++||+|+++|+++++||+ +.||||||+||+.++.+...- .. ...+. ...+++.
T Consensus 156 tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt-~c--------------~~~pe-~~~~l~~ 218 (495)
T PRK13840 156 TFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGT-SC--------------FMIPE-TFEFIDR 218 (495)
T ss_pred cCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCC-Cc--------------CCChH-HHHHHHH
Confidence 5677899999999999999999999999 889999999999988653210 00 00010 1123333
Q ss_pred HhcCCCCCCcEEEeecCCCCCcccccCCCCCcccceecCcccHHHHHHH-cCCCCcHHHHHHHHcCCCccccCCCCCCCc
Q 005552 359 ISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFI-KGTDGFAGAFAECLCGSPNLYQGGGRKPWN 437 (691)
Q Consensus 359 i~~dp~~~~~~liaE~w~~~~~~~~~~fp~~g~~~~wn~~f~d~~r~~~-~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~ 437 (691)
++..-...+..+|+|.|...+... ... -.....+|..+...+...+ .|+ ...+.+++... |..
T Consensus 219 lr~~~~~~~~~ll~Ei~~y~~~~~--~~~-~e~~~vYnF~Lp~ll~~aL~~~~---~~~L~~~l~~~----------p~~ 282 (495)
T PRK13840 219 LAKEARARGMEVLVEIHSYYKTQI--EIA-KKVDRVYDFALPPLILHTLFTGD---VEALAHWLEIR----------PRN 282 (495)
T ss_pred HHHHhhhcCCEEEEeCccccCccc--ccc-ccccEEecchhhHHHHHHHHhCC---chHHHHHHHhC----------CCc
Confidence 322111126679999875432100 000 0245666766666555443 443 33455555432 334
Q ss_pred eEEEeecCCCCchhh----------hhhhccccc-------cccCC---CCCCC--CCCCCCCccCCCCchhhHHHHHHH
Q 005552 438 SINFVCAHDGFSLAD----------LVSYNQKHN-------LANGE---DNNDG--ETHNNSWNCGQEGEFANILVKKLR 495 (691)
Q Consensus 438 ~vnyl~nHD~~rl~d----------~~~~~~k~n-------~~~G~---~~~dg--~~~n~sw~~g~~g~~~~~~~~~~r 495 (691)
+.|||.|||+..+-| ++.-.++.. ...|. .+.+| ....|..||+-...... .
T Consensus 283 ~~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~------~ 356 (495)
T PRK13840 283 AVTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGR------N 356 (495)
T ss_pred cEEeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcC------C
Confidence 579999999999822 222111110 00010 11112 12234555554211100 0
Q ss_pred HHHHHHHHHHHHhcCCceeEecCCccccCCCC--C-CCCCCCCCCccccccCccccc-chhHHHHHHHHHHHHHhCccCC
Q 005552 496 RRQMRNFFLCLMVSQGVPMISMGDEYGHTKGG--N-NNTYCHDNDINYFRWDKKEES-KSDFFRFCCLLTKFRHECESLG 571 (691)
Q Consensus 496 ~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g--~-~n~y~~~~~~~~~~W~~~~~~-~~~l~~f~r~Li~LRk~~paL~ 571 (691)
.++..++.+++|.+||||.||||+|+|....- . .-.-++.-.|..++|+..+.. ...+++-.++||++|+++|+|.
T Consensus 357 d~r~lla~ai~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF~ 436 (495)
T PRK13840 357 DQDYLAARAIQFFAPGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAFD 436 (495)
T ss_pred cHHHHHHHHHHHcCCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 23567788999999999999999999985410 0 001234445667777765532 3678999999999999999995
Q ss_pred CCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEeCCCCcEEEEcC
Q 005552 572 LSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLP 628 (691)
Q Consensus 572 ~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp 628 (691)
|++.. . ...+..+..++..+ .....+.+|+......+...
T Consensus 437 -~~~~~------~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 476 (495)
T PRK13840 437 -GAFSY------A---------ADGDTSLTLSWTAG-DSSASLTLDFAPKKGLITAL 476 (495)
T ss_pred -ceEEE------e---------cCCCCeEEEEEecC-CceEEEEEEcccceEEEEec
Confidence 44322 0 12345566766654 35677788888776555443
No 34
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=2.8e-18 Score=193.26 Aligned_cols=169 Identities=14% Similarity=0.214 Sum_probs=107.2
Q ss_pred CCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCceeEecCCccccCCC--CCCCCCCCC--CCccccccCccc--
Q 005552 474 HNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKG--GNNNTYCHD--NDINYFRWDKKE-- 547 (691)
Q Consensus 474 ~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltspGiP~iy~G~E~g~~~~--g~~n~y~~~--~~~~~~~W~~~~-- 547 (691)
....|..+..-. .+...++..+..++..++++++||+|.+|+|+|+|+... ...+..... ..+++|+|+...
T Consensus 345 ~~a~W~~~~~~~--~r~~sr~~~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~~ 422 (545)
T KOG0471|consen 345 RWAHWVLGNHDQ--ARLASRFGSDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTNA 422 (545)
T ss_pred CceeeeecCccc--hhhHHHhcchhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCcccccccccc
Confidence 334566554322 122223344456778889999999999999999999876 222221111 126788887651
Q ss_pred -------------------------ccchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEE
Q 005552 548 -------------------------ESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAF 602 (691)
Q Consensus 548 -------------------------~~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf 602 (691)
.++++++..++++..||++...+..+.... ...+..+++|
T Consensus 423 gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~---------------~~~~~~if~~ 487 (545)
T KOG0471|consen 423 GFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVL---------------FAATPGLFSF 487 (545)
T ss_pred CCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceee---------------ecCCCceEEE
Confidence 124788999999999999876555544322 1245689999
Q ss_pred EEEccCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEE
Q 005552 603 TLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSII 682 (691)
Q Consensus 603 ~r~~~~~~~llVv~N~~~~~~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~V 682 (691)
.|.......+++++|++..+....+-.... ...+.++. .. .....+.|.|++++|
T Consensus 488 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~--------------~~~~~~~l~p~e~~v 542 (545)
T KOG0471|consen 488 SRNWDGNERFIAVLNFGDSPLSLNLTDLDS--VSLLSSNY---------SD--------------VDLSRLKLEPHEGLV 542 (545)
T ss_pred EeccCCCceEEEEEecCCcccccccccccc--eeeeeccc---------cc--------------cccceeeecCCceEE
Confidence 998776678888889988776554433211 11111111 00 234578999999999
Q ss_pred EE
Q 005552 683 LL 684 (691)
Q Consensus 683 l~ 684 (691)
|.
T Consensus 543 l~ 544 (545)
T KOG0471|consen 543 LR 544 (545)
T ss_pred Ee
Confidence 85
No 35
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.7e-18 Score=196.38 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcCCceeEecCCccccCCCCCCC-------------CCCCCCCccccccC------------------
Q 005552 496 RRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNN-------------TYCHDNDINYFRWD------------------ 544 (691)
Q Consensus 496 ~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n-------------~y~~~~~~~~~~W~------------------ 544 (691)
...++++++++++.+|+|+||+|+|+|++.....+ .-.++..+.+|.|+
T Consensus 331 ~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~ 410 (505)
T COG0366 331 DASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVN 410 (505)
T ss_pred HHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccC
Confidence 45677888899999999999999999998754432 11234678889988
Q ss_pred ---------ccc-cc--chhHHHHHHHHHHHHHhCccC-CCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCE
Q 005552 545 ---------KKE-ES--KSDFFRFCCLLTKFRHECESL-GLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGE 611 (691)
Q Consensus 545 ---------~~~-~~--~~~l~~f~r~Li~LRk~~paL-~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~ 611 (691)
... .+ ..+++.++++|+++|+.+..+ ..+.... ........+++|.|... ++.
T Consensus 411 ~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~-------------~~~~~~~~~~~~~~~~~-~~~ 476 (505)
T COG0366 411 PNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFV-------------LLADDDPSLLAFLRESG-GET 476 (505)
T ss_pred hhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccce-------------ecCCCCceEEEEecccC-Cce
Confidence 111 11 358899999999999998444 4442221 00123447999999866 367
Q ss_pred EEEEEeCCCCcEEEEcCCC
Q 005552 612 IYVAFNASHLPVIISLPKR 630 (691)
Q Consensus 612 llVv~N~~~~~~~v~lp~~ 630 (691)
++|++|++.....+.+|..
T Consensus 477 ~~~~~n~~~~~~~~~~p~~ 495 (505)
T COG0366 477 LLVVNNLSEEEQEVELPGS 495 (505)
T ss_pred EEEEEcCCCccccccCCch
Confidence 9999999988766777753
No 36
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.77 E-value=4.6e-17 Score=179.14 Aligned_cols=354 Identities=16% Similarity=0.094 Sum_probs=202.7
Q ss_pred CCccc--cccCccCcCCCCCHH--HHHHHH-HHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCC
Q 005552 274 KGEFY--NYSGCGNTFNCNHPV--VRQFIV-DCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGT 348 (691)
Q Consensus 274 ~g~y~--n~sg~g~dln~~~p~--vr~~ii-d~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~ 348 (691)
.+.|| .|..-+|+|||.||. ||+.|+ |+++||+ +.|+||||+||++++..+.. .++..+
T Consensus 247 Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~-----------~~~~~~---- 310 (688)
T TIGR02455 247 RRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERR-----------AEGTAW---- 310 (688)
T ss_pred hhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecC-----------CCCCCC----
Confidence 34455 356678999999999 999999 9999999 99999999999999965321 011111
Q ss_pred CCCChhHHHH----HhcCCCCCCcEEEeecCCCCCcccccCCCCCcccceecCcccHHHHHH-HcCCCCcHHHHHHHHcC
Q 005552 349 PLRSPPLIDL----ISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQF-IKGTDGFAGAFAECLCG 423 (691)
Q Consensus 349 ~~~~~~~~~~----i~~dp~~~~~~liaE~w~~~~~~~~~~fp~~g~~~~wn~~f~d~~r~~-~~g~~~~~~~~~~~l~g 423 (691)
+.. .++++. +...-..++.++++|.--... ....-|.+ +.+..+|...+-.+.-. .+|+. .-+...|..
T Consensus 311 ~e~-h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~~~-d~~~~~g~-~~dl~~dF~t~p~~~~AL~tgda---~pLr~~L~~ 384 (688)
T TIGR02455 311 SEG-HPLSLTGNQLIAGAIRKAGGFSFQELNLTID-DIAAMSHG-GADLSYDFITRPAYHHALLTGDT---EFLRLMLKE 384 (688)
T ss_pred Ccc-CHHHHHHHHHHHHhhhcCCeeEeeeccCCHH-HHHHHhCC-CcceeecccccHHHHHHHHcCCH---HHHHHHHHh
Confidence 111 223322 221113358899999621100 00001122 44455555444443333 34432 333344433
Q ss_pred CCccccCCCCCCCceEEEeecCCCCchhhhhhhcc---------ccccccCCCC-----------CCCCCCCCC---C--
Q 005552 424 SPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQ---------KHNLANGEDN-----------NDGETHNNS---W-- 478 (691)
Q Consensus 424 ~~~~~~~~~~~p~~~vnyl~nHD~~rl~d~~~~~~---------k~n~~~G~~~-----------~dg~~~n~s---w-- 478 (691)
.... +-++.+.++|+.|||+.++. ++..-. ++....|... -.++..+|. |
T Consensus 385 ~~~~----gid~~~~~~~LrNHDELtle-lvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~ 459 (688)
T TIGR02455 385 MHAF----GIDPASLIHALQNHDELTLE-LVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLKFVTN 459 (688)
T ss_pred hhcC----CCCchhhhhhccCccccchh-hhhhcccccccccccccccCCccccCHHHHHHHHHHhcCCCccccceEEec
Confidence 2221 12456788999999998863 231000 0000011100 001111111 1
Q ss_pred ------------ccCCCCchhhHHHHHHHHHHHHHHHHHHHh----cCCceeEecC--------------CccccCCC-C
Q 005552 479 ------------NCGQEGEFANILVKKLRRRQMRNFFLCLMV----SQGVPMISMG--------------DEYGHTKG-G 527 (691)
Q Consensus 479 ------------~~g~~g~~~~~~~~~~r~~~~k~a~a~llt----spGiP~iy~G--------------~E~g~~~~-g 527 (691)
+.|.. +...+..-..++++++.++|++ +||+|+|||| +|+|+-.. +
T Consensus 460 gi~~t~a~~ia~~~GIR---rLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~w 536 (688)
T TIGR02455 460 GIACTTASLIAAALGIR---DLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTRW 536 (688)
T ss_pred cccccchhhhhhhcCCc---cchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCcccc
Confidence 22321 1111222235678888888888 9999999999 99998742 1
Q ss_pred C-CCCCCCCC----C--------ccccccCcccc---cchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCC
Q 005552 528 N-NNTYCHDN----D--------INYFRWDKKEE---SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLP 591 (691)
Q Consensus 528 ~-~n~y~~~~----~--------~~~~~W~~~~~---~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~ 591 (691)
- +..|..-+ . +...-+...+. ++.++++.+|+|++.||.++++..+.+...
T Consensus 537 l~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~------------- 603 (688)
T TIGR02455 537 IHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIP------------- 603 (688)
T ss_pred ccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeec-------------
Confidence 1 11121110 0 11112222221 358999999999999999999998876541
Q ss_pred CCCCCCcEEEEEEEcc-CCCEEEEEEeCCCCcEE--EEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCC
Q 005552 592 DWSDKSRFVAFTLIDS-VKGEIYVAFNASHLPVI--ISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFL 668 (691)
Q Consensus 592 ~~~~~~~vlaf~r~~~-~~~~llVv~N~~~~~~~--v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (691)
......|+++.+... .++.+++|.||+.+++. +.++..+++.+..+++....... . + .
T Consensus 604 -~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~~~~--~--~--------------~ 664 (688)
T TIGR02455 604 -DVQAPGLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVEGDL--T--D--------------D 664 (688)
T ss_pred -CCCCCcEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCccCCc--C--C--------------C
Confidence 134568999988743 23679999999997764 55666556677777765432110 0 0 2
Q ss_pred CCceEEeeCCeEEEEEecCCC
Q 005552 669 DANLYPMLSYSSIILLLSPDE 689 (691)
Q Consensus 669 ~~~~~~l~p~s~~Vl~~~~~~ 689 (691)
..-.++|+||....|..+++.
T Consensus 665 ~~~~i~L~~y~~~wl~~~~~~ 685 (688)
T TIGR02455 665 CELMINLDPYEALALRIVNAA 685 (688)
T ss_pred ceeEEEecCcceEEEEecccc
Confidence 245789999999998877654
No 37
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.76 E-value=2e-18 Score=151.41 Aligned_cols=92 Identities=29% Similarity=0.466 Sum_probs=75.7
Q ss_pred CCeEEeCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCccCCCCC
Q 005552 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEG 177 (691)
Q Consensus 98 lGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~~~~~~g 177 (691)
|||++.+++++|+||||+|++|+|+||+ +|+...+..+++|+ ++++|+|+++|+++.+|.+|+|+|++.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l~~--~~~~~~~~~~~~m~---~~~~gvw~~~v~~~~~g~~Y~y~i~~~------ 69 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLLYD--KDDQDKVLETVQMK---RGENGVWSVTLDGDLEGYYYLYEVKVY------ 69 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEEEc--CCCCCCcceeEeee---cCCCCEEEEEeCCccCCcEEEEEEEEe------
Confidence 7999999999999999999999999985 33322334578886 367899999999999999999999865
Q ss_pred CccCCCccccCccccceecccccCC
Q 005552 178 HYFDPTKIVLDPYAKAVISRAQFGV 202 (691)
Q Consensus 178 ~~~~~~~~~~DPYA~~~~~~~~~~~ 202 (691)
+++...++||||+++..++.+++
T Consensus 70 --~~~~~~~~DPyA~~~~~~~~~s~ 92 (100)
T cd02860 70 --KGETNEVVDPYAKALSANGERSV 92 (100)
T ss_pred --ceEEEEEcCcccEeEeeCCCceE
Confidence 12346899999999988876653
No 38
>PLN02784 alpha-amylase
Probab=99.60 E-value=1.8e-14 Score=163.89 Aligned_cols=178 Identities=17% Similarity=0.273 Sum_probs=107.5
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcCC
Q 005552 284 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDP 363 (691)
Q Consensus 284 g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~dp 363 (691)
.+|||++||.||++|.+.++||++++||||||||+++++.. .+ +.+.+..-
T Consensus 640 lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~------~F----------------------vkeyv~a~- 690 (894)
T PLN02784 640 APNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWG------GY----------------------VKDYMEAS- 690 (894)
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCH------HH----------------------HHHHHhcc-
Confidence 36899999999999999999999999999999999987632 11 12222221
Q ss_pred CCCCcEEEeecCCCCCcccccCCCCCcccceecCc-ccHHHHHHHcCCCCc--------HHHHHHHHcCCC-----ccc-
Q 005552 364 ILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGK-YRDIVRQFIKGTDGF--------AGAFAECLCGSP-----NLY- 428 (691)
Q Consensus 364 ~~~~~~liaE~w~~~~~~~~~~fp~~g~~~~wn~~-f~d~~r~~~~g~~~~--------~~~~~~~l~g~~-----~~~- 428 (691)
...++|||.|+.... .. .+..+|.+ -++.+.+++....+. ...|...+.+.. +..
T Consensus 691 --kp~F~VGEyWd~~~~-~~-------g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e~wrL~d~~g 760 (894)
T PLN02784 691 --EPYFAVGEYWDSLSY-TY-------GEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQKG 760 (894)
T ss_pred --CCcEEEEEecccccc-cc-------CccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccchhhhhhccC
Confidence 147999999986310 00 01112211 155566666432211 111222222100 000
Q ss_pred -cC--CCCCCCceEEEeecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHH
Q 005552 429 -QG--GGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLC 505 (691)
Q Consensus 429 -~~--~~~~p~~~vnyl~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~ 505 (691)
.. -+..|..+|.||+|||+.+... +|... .....+++|+
T Consensus 761 ~~~glv~~~P~~AVTFVDNHDTg~~Q~------------------------~w~~p--------------~~k~~~AYAy 802 (894)
T PLN02784 761 KPPGVVGWWPSRAVTFIENHDTGSTQG------------------------HWRFP--------------EGKEMQGYAY 802 (894)
T ss_pred CCCCeeccccCceEEEecCCCCCCCcc------------------------cCCCC--------------ccchhhHHHH
Confidence 00 1346788999999999874210 12110 1123458899
Q ss_pred HHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhC
Q 005552 506 LMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHEC 567 (691)
Q Consensus 506 lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~ 567 (691)
+||.||+|+||||+=++. +..-++.||.+||+.
T Consensus 803 ILthpG~PcVFy~h~y~~-----------------------------~~~~I~~Li~iRk~~ 835 (894)
T PLN02784 803 ILTHPGTPAVFYDHIFSH-----------------------------YHPEIASLISLRNRQ 835 (894)
T ss_pred HHcCCCcceEEehhhhhh-----------------------------hHHHHHHHHHHHHHc
Confidence 999999999999874321 122399999999985
No 39
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.58 E-value=3.1e-15 Score=127.17 Aligned_cols=81 Identities=36% Similarity=0.651 Sum_probs=61.0
Q ss_pred CCCeEEeCC--cEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCC-CCC-ceEEEEEcCcc
Q 005552 97 PFGATLRDG--GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-FKD-MLYGYKFDGKF 172 (691)
Q Consensus 97 ~lGa~~~~~--g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~-~~g-~~Y~y~i~g~~ 172 (691)
||||++.++ +++|+||||+|++|+|+++..+.| +...++|++ +..+|+|++++++. .+| .+|+|+|++.
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~----~~~~~~m~~--~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~- 73 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSW----PAEEYPMTR--KDDDGVWEVTVPGDLPPGGYYYKYRIDGD- 73 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTTSS----EEEEEEEEE--ECTTTEEEEEEEGCGTTTT-EEEEEEEET-
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeeecC----CCceEEeee--cCCCCEEEEEEcCCcCCCCEEEEEEEEeC-
Confidence 799999986 899999999999999997654313 346788863 46789999999954 556 6999999975
Q ss_pred CCCCCCccCCCccccCccc
Q 005552 173 SPQEGHYFDPTKIVLDPYA 191 (691)
Q Consensus 173 ~~~~g~~~~~~~~~~DPYA 191 (691)
.| ....++||||
T Consensus 74 ---~g----~~~~~~DPYA 85 (85)
T PF02922_consen 74 ---DG----ETPEVVDPYA 85 (85)
T ss_dssp ---TT----EEEEET-TT-
T ss_pred ---CC----cEEEEeCCCC
Confidence 22 3457999997
No 40
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.54 E-value=2.2e-14 Score=121.78 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=60.3
Q ss_pred CeEEeC-CcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCccCCCCC
Q 005552 99 GATLRD-GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEG 177 (691)
Q Consensus 99 Ga~~~~-~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~~~~~~g 177 (691)
||++.+ ++++|+||||+|++|+|+|++ + ..++|. +.++|+|+++++++ +|..|+|+|++.
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~---~------~~~~m~---~~~~G~W~~~v~~~-~g~~Y~y~v~~~------ 61 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD---G------EEIPMQ---RDGDGWFEAEVPGA-AGTRYRYRLDDG------ 61 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC---C------CcccCc---cCCCcEEEEEeCCC-CCCeEEEEECCC------
Confidence 788887 799999999999999999864 1 246775 46789999999999 999999999832
Q ss_pred CccCCCccccCcccccee
Q 005552 178 HYFDPTKIVLDPYAKAVI 195 (691)
Q Consensus 178 ~~~~~~~~~~DPYA~~~~ 195 (691)
..++||||++..
T Consensus 62 ------~~~~DP~a~~~~ 73 (85)
T cd02853 62 ------TPVPDPASRFQP 73 (85)
T ss_pred ------cCCCCCccccCC
Confidence 258999999863
No 41
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.53 E-value=2.2e-14 Score=124.66 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=64.1
Q ss_pred eCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCC-------CCCceEEEEEcCccCCC
Q 005552 103 RDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-------FKDMLYGYKFDGKFSPQ 175 (691)
Q Consensus 103 ~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~-------~~g~~Y~y~i~g~~~~~ 175 (691)
.++|++||||||+|++|+|+ ++|++|+. ..++|.+ ...|+|+++||++ .+|.+|+|+|...
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~-GdFn~W~~----~~~~m~k---~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~---- 70 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLI-GDFNNWDR----NAHPLKK---DEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTP---- 70 (99)
T ss_pred CCCeEEEEEECCCCCEEEEE-ccCCCCCC----cCcccEE---CCCCEEEEEECCcccccccCCCCCEEEEEEEeC----
Confidence 45689999999999999999 99999964 3467763 4689999999995 5999999999753
Q ss_pred CCCccCCCccccCccccceecc
Q 005552 176 EGHYFDPTKIVLDPYAKAVISR 197 (691)
Q Consensus 176 ~g~~~~~~~~~~DPYA~~~~~~ 197 (691)
+|. ...+.||||+.++.+
T Consensus 71 ~G~----~~~~~DPyA~~~~~~ 88 (99)
T cd02854 71 SGE----WIDRIPAWIKYVTQD 88 (99)
T ss_pred CCC----EEEEcCcceeEEEeC
Confidence 333 346899999999754
No 42
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.34 E-value=6.7e-12 Score=111.26 Aligned_cols=86 Identities=26% Similarity=0.471 Sum_probs=67.2
Q ss_pred CCCeEEeC----CcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCcc
Q 005552 97 PFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (691)
Q Consensus 97 ~lGa~~~~----~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~~ 172 (691)
.||+|+.+ ++++||||||.|++|+|+ .++++|+. ..++|.+ ....|+|++++++..+|..|+|++.+.
T Consensus 9 ~lG~~~~~~~~~~~~~frv~aP~A~~V~l~-~~~~~~~~----~~~~m~~--~~~~G~w~~~v~~~~~~~~Y~~~v~~~- 80 (106)
T cd02855 9 KLGAHPTEVDGVSGVRFAVWAPNARRVSVV-GDFNGWDG----RRHPMRR--RGDSGVWELFIPGLGEGELYKYEILGA- 80 (106)
T ss_pred hcCCEEcccCCcCCEEEEEECCCCCEEEEE-EECCCCCC----cceecEE--CCCCCEEEEEECCCCCCCEEEEEEECC-
Confidence 69999988 889999999999999998 46666643 2456753 234899999999999999999999853
Q ss_pred CCCCCCccCCCccccCccccceecc
Q 005552 173 SPQEGHYFDPTKIVLDPYAKAVISR 197 (691)
Q Consensus 173 ~~~~g~~~~~~~~~~DPYA~~~~~~ 197 (691)
.|. ...+.||||+.+...
T Consensus 81 ---~g~----~~~~~DPYa~~~~~~ 98 (106)
T cd02855 81 ---DGH----LPLKADPYAFYSELR 98 (106)
T ss_pred ---CCC----EEEeeCCCceeeEeC
Confidence 222 236799999988653
No 43
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.25 E-value=1.3e-09 Score=118.69 Aligned_cols=145 Identities=20% Similarity=0.373 Sum_probs=84.2
Q ss_pred CCCeEEeCCc-EEEEEEcCCCC-------eEEEEeeeCCCc-cC----Cce---eeEeecccccCCCCCeEEEEEcCC--
Q 005552 97 PFGATLRDGG-VNFSIFSSNAV-------SATLCLITLSDL-QE----NKV---TEEIALDSFANKTGDVWHVFLKGD-- 158 (691)
Q Consensus 97 ~lGa~~~~~g-~~F~vwAP~A~-------~V~L~l~~~~~~-~~----~~~---~~~~~m~~~~~~~~gvW~~~v~g~-- 158 (691)
.||||+..+| |.|-.|.|.-. .|.|.++..-+- +. ... -..+||. +.+.+-+..+.|.
T Consensus 27 rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~----~qgey~WgVv~Glra 102 (811)
T PF14872_consen 27 RLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLE----RQGEYHWGVVAGLRA 102 (811)
T ss_pred HhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeec----cccceeeehhhccCC
Confidence 7999999888 89999999876 889988865321 00 111 1234543 3455555667764
Q ss_pred ----CCCceEEEEEcCccCCCCCCccCCCccccCccccceecccccCCCCCCCCCCCCceecccCCCC-CC-CC-----C
Q 005552 159 ----FKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPED-EF-DW-----E 227 (691)
Q Consensus 159 ----~~g~~Y~y~i~g~~~~~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~-~W-----~ 227 (691)
..|.+|-.+--.. +| ....+.||-|.++ +||+-+|.+- + .+.++-....+ .| .= +
T Consensus 103 Gtr~q~GsfYwLry~d~----~~----~~~~I~DpLaySl----PyGvfaPAEl-Y-Dl~~lq~~RaD~~Yf~~~~a~~~ 168 (811)
T PF14872_consen 103 GTRDQAGSFYWLRYRDQ----DG----EVQIIRDPLAYSL----PYGVFAPAEL-Y-DLERLQRRRADLDYFEATGAADP 168 (811)
T ss_pred CCcccccceEEEEEccC----CC----CeEEecccccccC----cccccChHHh-h-chHhHhhhhhhHHHHHhhccccC
Confidence 4567787664321 12 3457999999877 5777766420 0 00000000000 00 00 0
Q ss_pred CCCCCCCCCCCceEEEEeecCccccCCCCCCCCcchhcccc
Q 005552 228 GDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVE 268 (691)
Q Consensus 228 ~~~~~~~~~~~~vIYElHVr~Ft~~~~~~~~~~Gtf~g~~e 268 (691)
.+..+.. .....|-++||++-|+ .||+.|+++
T Consensus 169 ~~~~~rv-~~P~nILQiHv~TAsp--------~GtlaGLT~ 200 (811)
T PF14872_consen 169 SDGIPRV-PAPRNILQIHVGTASP--------EGTLAGLTR 200 (811)
T ss_pred CCCCccc-CCCceeEEEecCCCCC--------CcchHHHHH
Confidence 1112222 2467899999999988 689998876
No 44
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.07 E-value=4.8e-10 Score=94.96 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=49.4
Q ss_pred CcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCC-ceEEEEEcCccCCCCCCccCCC
Q 005552 105 GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKD-MLYGYKFDGKFSPQEGHYFDPT 183 (691)
Q Consensus 105 ~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g-~~Y~y~i~g~~~~~~g~~~~~~ 183 (691)
+.++|+||||.|++|+|++ +++++ ..++|++ ...|+|+++++....| ..|.|+++|.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~-~~~~~------~~~~m~~---~~~G~W~~~v~~l~~g~Y~Y~~~vdg~------------ 63 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRG-SWGGA------GSHPMTK---DEAGVWSVTTGPLAPGIYTYSFLVDGV------------ 63 (85)
T ss_pred CcEEEEEECCCCCEEEEEe-ecCCC------ccEeCeE---CCCeEEEEEECCCCCcEEEEEEEECCe------------
Confidence 4699999999999999995 45433 3577864 4579999999654444 2456666653
Q ss_pred ccccCcccccee
Q 005552 184 KIVLDPYAKAVI 195 (691)
Q Consensus 184 ~~~~DPYA~~~~ 195 (691)
.++||+++...
T Consensus 64 -~~~DP~s~~~~ 74 (85)
T cd02858 64 -RVIDPSNPTTK 74 (85)
T ss_pred -EecCCCCCcee
Confidence 57999998553
No 45
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.02 E-value=1.6e-09 Score=125.78 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=90.4
Q ss_pred HHHHHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccc---------------cchhHHHHHHHHHHHHHh
Q 005552 502 FFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE---------------SKSDFFRFCCLLTKFRHE 566 (691)
Q Consensus 502 a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~---------------~~~~l~~f~r~Li~LRk~ 566 (691)
..+++||+||+|.||||+|++.... ..|+.+.+++|+.... +....+.++++|++||++
T Consensus 706 q~lLqlT~PGVPdIYqG~E~wd~sl------vDPDNRRpvd~~~r~~~L~~l~~~~~~~~~~dg~~kl~~~~~lL~lRr~ 779 (879)
T PRK14511 706 QTLLKLTSPGVPDVYQGTELWDFSL------VDPDNRRPVDFAARAAALARLDEGAELLPWDDGRIKLLLIARALRLRRD 779 (879)
T ss_pred HHHHHHCcCCCCcccCcccchhccC------CCCCCCCCCChHHHHHHHhhcccccccccCCcchHHHHHHHHHHHHHHh
Confidence 3456799999999999999998653 2456778899986331 123458899999999999
Q ss_pred CccCC-CCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEeCCC---------CcEEEEcCCC-CCCce
Q 005552 567 CESLG-LSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASH---------LPVIISLPKR-PGYRW 635 (691)
Q Consensus 567 ~paL~-~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N~~~---------~~~~v~lp~~-~g~~w 635 (691)
+|+|. .|++.. +...| ...+++++|.|..+ ++.++||+|-.. ....+.||.. .++.|
T Consensus 780 ~p~Lf~~G~y~p---L~~~G--------~~a~~v~AFaR~~~-~~~~vvvv~R~~~~l~~~~~W~dt~v~LP~~~~~~~w 847 (879)
T PRK14511 780 RPELFAGGEYLP---LEVSG--------PHAGHVLAFARGGG-GGRALTVAPRLPAGLLGAGGWGDTRLVLPEILSGGRW 847 (879)
T ss_pred CHHHhhCCceEE---EEecC--------CCCCcEEEEEEecC-CceEEEEeccccccccccCCcCCeEEeCCCccCCCce
Confidence 99994 588765 22211 12468999999875 478888987654 3557889974 45689
Q ss_pred EEEecCC
Q 005552 636 EPLVDTS 642 (691)
Q Consensus 636 ~~l~~t~ 642 (691)
+.++...
T Consensus 848 ~d~lTG~ 854 (879)
T PRK14511 848 RDLLTGE 854 (879)
T ss_pred eEeccCC
Confidence 9999764
No 46
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=98.91 E-value=6e-09 Score=120.51 Aligned_cols=126 Identities=16% Similarity=0.228 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccc------------------cchhHHHHH
Q 005552 496 RRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE------------------SKSDFFRFC 557 (691)
Q Consensus 496 ~~~~k~a~a~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~------------------~~~~l~~f~ 557 (691)
....+..+++.||+||+|.||||+|+++.... .|+.|.+|+|+.... +....+.++
T Consensus 644 ~~nsLsq~lLklT~PGvPdIYqGtE~wd~slv------DPDNRRpvd~~~r~~~L~~l~~~~~~~l~~~~~dg~~Kl~~i 717 (825)
T TIGR02401 644 LQNSLSQTLLKLTAPGVPDIYQGTEFWDLSLV------DPDNRRPVDYAARRAALLQLTTPNWSELELWLLDGLVKLAVT 717 (825)
T ss_pred HHHHHHHHHHHHcCCCCCcccccccccccCCC------CCCccCCCChHHHHHHHHhhhcccchhhhccccccHHHHHHH
Confidence 44556677889999999999999999987533 345778999974432 125577999
Q ss_pred HHHHHHHHhCcc-CCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEeCCCCc--------------
Q 005552 558 CLLTKFRHECES-LGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLP-------------- 622 (691)
Q Consensus 558 r~Li~LRk~~pa-L~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N~~~~~-------------- 622 (691)
++|++|||++|+ |..|++.. +.-.| ...+.+++|.|..+ ++.++||+|-....
T Consensus 718 ~~lL~lRr~~p~lF~~G~y~p---L~~~G--------~~~~~vvaFaR~~~-~~~~vvvv~R~~~~l~~~~~~~~~~W~d 785 (825)
T TIGR02401 718 AAALQLRREHPELFGQGDYQP---LEAGG--------PGAAHVIAFARGTD-RQAAIVVVTRLSLRLIQTGLPPNGFWRD 785 (825)
T ss_pred HHHHHHHHhCHHhhhcCCeEE---EeccC--------CCcCcEEEEEEecC-CcEEEEEEecchhhhhhccCccccccCC
Confidence 999999999997 57888765 11111 13468999999876 47888888864321
Q ss_pred EEEEcCCCCCCceEEEecCC
Q 005552 623 VIISLPKRPGYRWEPLVDTS 642 (691)
Q Consensus 623 ~~v~lp~~~g~~w~~l~~t~ 642 (691)
..+.||. +.|+.++...
T Consensus 786 T~l~LP~---g~w~d~Ltg~ 802 (825)
T TIGR02401 786 TALTLPA---GAWRDILTGE 802 (825)
T ss_pred ceEecCC---cceeecccCc
Confidence 2456664 3799888754
No 47
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=4.2e-08 Score=99.69 Aligned_cols=269 Identities=17% Similarity=0.184 Sum_probs=145.1
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChhHHHHHhcC--
Q 005552 285 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND-- 362 (691)
Q Consensus 285 ~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~d-- 362 (691)
-|||-.+.-||.-|++-|.+.+ ++||-|||.||++||.-..- ..+++. +..+..|
T Consensus 184 ~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di----~~I~~~------------------l~nLnsD~f 240 (504)
T KOG2212|consen 184 LDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDI----KAILDK------------------LHNLNSDWF 240 (504)
T ss_pred chhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHH----HHHHHH------------------Hhhcccccc
Confidence 3789999999999999999999 99999999999999953210 001000 0011111
Q ss_pred CCCCCcEEEeecCCCCCcc-cccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccccCCCCCCCceEEE
Q 005552 363 PILRGVKLIAEAWDTGGLY-QVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINF 441 (691)
Q Consensus 363 p~~~~~~liaE~w~~~~~~-~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~p~~~vny 441 (691)
|.....+++-|.-|.++-. .-+.+-+.|- .-+..|.+.+-..+++...+ .-+..+ |...-| ....++++|
T Consensus 241 ~s~srpfi~qEVID~GgE~v~~~dY~g~G~--~TeF~f~~~ig~~~r~~~~~-kyL~nw--G~~wGf----~~s~~~L~F 311 (504)
T KOG2212|consen 241 PSGSKPFIYQEVIDLGGEPIKSSDYFGNGR--VTEFKFGAKLGTVIRKWNKM-KYLKNW--GEGWGF----MPSDRALVF 311 (504)
T ss_pred cCCCCceehhhhhhcCCceeecccccCCce--eeeeechHHHHHHHhcchhH-HHHHhc--CCccCc----CCCcceEEE
Confidence 1223456666666655311 1112222222 22345777887777775321 112211 111111 123488999
Q ss_pred eecCCCCchhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHHHHHHHHHHHHHhcC-CceeEecCCc
Q 005552 442 VCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQ-GVPMISMGDE 520 (691)
Q Consensus 442 l~nHD~~rl~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~~~~k~a~a~lltsp-GiP~iy~G~E 520 (691)
++|||+.|-.. +.|.. --+. ...++.|||.+++|..| |+|=+..-=-
T Consensus 312 vDNHDNQR~~g----------agga~----------------VltY------K~~~~YkmA~~FmLA~PyG~~RVMSSFa 359 (504)
T KOG2212|consen 312 VDNHDNQRGHG----------AGGAS----------------VLTY------KDARLYKMAVGFMLAHPYGFTRVMSSFA 359 (504)
T ss_pred eccCcccccCC----------CCcce----------------EEEe------cchhhhhhhhhhheecccCcchhheeee
Confidence 99999987221 10100 0000 01567899999999988 7776543323
Q ss_pred cccCCCCC--CCCC-------CCCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCC
Q 005552 521 YGHTKGGN--NNTY-------CHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLP 591 (691)
Q Consensus 521 ~g~~~~g~--~n~y-------~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~ 591 (691)
|-.+..+. .+.+ +.|..-+ --|-. ..-.+-++.|.++|.+- +...... |
T Consensus 360 F~~~D~~PP~~~~~~i~SP~Fn~D~tC~-~GWvC-----EHRWrqI~~Mv~FrnAV---~~t~~~~-----w-------- 417 (504)
T KOG2212|consen 360 FDVNDWVPPPNNNGVIKSPTFNPDTTCG-NGWVC-----EHRWRQIRNMVNFRNAV---DGTPFTN-----W-------- 417 (504)
T ss_pred eecCCCCCCCCCCcceecceeCCCCccc-Cceee-----echHHHHHHHHhhhhhc---CCccccc-----e--------
Confidence 32222221 1211 1111000 02322 12245688999999763 2221111 1
Q ss_pred CCCCCCcEEEEEEEccCCCEEEEEEeCCCCcEEEEcCC-CCCCceEEEecCCCC
Q 005552 592 DWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPK-RPGYRWEPLVDTSKP 644 (691)
Q Consensus 592 ~~~~~~~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp~-~~g~~w~~l~~t~~~ 644 (691)
|++..+-|+|.| +.+=++++|...-..+-.|-. .|.++|-.++..+..
T Consensus 418 -~d~g~nqIaF~R----g~kGF~A~Nn~~~d~s~~l~T~LPAGtYCDviSG~~~ 466 (504)
T KOG2212|consen 418 -YDNGSNQIAFGR----GNRGFIAFNNDDWDFSLTLQTGLPAGTYCDVISGDKI 466 (504)
T ss_pred -eeCCCcEEEEec----CCccEEEEeCcchhHHHHHhcCCCCCceeeeeccccc
Confidence 345578899999 356678888877554433322 233588888876553
No 48
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.86 E-value=8e-09 Score=88.40 Aligned_cols=89 Identities=24% Similarity=0.309 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhCccCCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEeCCCCcEEEEcCCCCCCce
Q 005552 556 FCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRW 635 (691)
Q Consensus 556 f~r~Li~LRk~~paL~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp~~~g~~w 635 (691)
|||+||+|||++|+|+.+++.. +.+. ...++.++++.|..+ ++.++|++|++++++++. ....|
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~---~~~~--------~~~~~~l~~~~r~~~-~~~l~v~~Nls~~~~~~~----~~~~~ 64 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRF---LEVE--------RDAPDALLAFRRTGG-GERLLVAFNLSDEPVTVP----EGPWG 64 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEE---EEEE--------EEEETTEEEEEEEET-TEEEEEEEE-SSS-EEEE----TSCCE
T ss_pred CHHHHHHHHhhCccccCCCccc---EEEE--------ecCCCEEEEEEEEcC-CceEEEEEecCCCcEEcc----CCCCC
Confidence 7999999999999999987654 2221 023457888888655 479999999999998887 23368
Q ss_pred EEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEE
Q 005552 636 EPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIIL 683 (691)
Q Consensus 636 ~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl 683 (691)
+.++.++.... ...++|||++++|+
T Consensus 65 ~~l~~s~~~~~-----------------------~~~~~L~p~~~~v~ 89 (89)
T PF11941_consen 65 EVLFSSEPARA-----------------------GGAGTLPPWSVVVL 89 (89)
T ss_dssp EEEEECSCSSE-------------------------EEEE-TTEEEEE
T ss_pred eEEEcCCCccc-----------------------ccCceECCCEEEEC
Confidence 88887754321 12789999999986
No 49
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.82 E-value=5.5e-09 Score=122.83 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=65.0
Q ss_pred CCCeEEeCCcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCccCCCC
Q 005552 97 PFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQE 176 (691)
Q Consensus 97 ~lGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~~~~~~ 176 (691)
.||||....|++|+||||+|++|+|+ ++|++ . ...||++ ....|+|+++|| ..+|..|+|+|.. +
T Consensus 20 ~lGah~~~~g~~f~vwaP~A~~V~vv-gdfn~--~----~~~~m~~--~~~~G~w~~~ip-~~~g~~YKy~i~~-----~ 84 (726)
T PRK05402 20 VLGPHPTGAGLVVRALLPGAEEVWVI-LPGGG--R----KLAELER--LHPRGLFAGVLP-RKGPFDYRLRVTW-----G 84 (726)
T ss_pred hcCCCCCCCcEEEEEECCCCeEEEEE-eecCC--C----ccccceE--cCCCceEEEEec-CCCCCCeEEEEEe-----C
Confidence 59999988899999999999999997 88874 1 3567764 246799999999 9999999999973 2
Q ss_pred CCccCCCccccCccccce
Q 005552 177 GHYFDPTKIVLDPYAKAV 194 (691)
Q Consensus 177 g~~~~~~~~~~DPYA~~~ 194 (691)
|. ...+.||||...
T Consensus 85 g~----~~~k~DPyaf~~ 98 (726)
T PRK05402 85 GG----EQLIDDPYRFGP 98 (726)
T ss_pred Cc----eeEeccccccCC
Confidence 32 347999999854
No 50
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=98.79 E-value=5.1e-09 Score=98.32 Aligned_cols=116 Identities=17% Similarity=0.275 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHHhCccCCCCCCCCC-cceEeccCCCCCCCCCCCCcEEEEEEEccC---------CCEEEEEEeCCC
Q 005552 551 SDFFRFCCLLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRFVAFTLIDSV---------KGEIYVAFNASH 620 (691)
Q Consensus 551 ~~l~~f~r~Li~LRk~~paL~~g~~~~~-~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~---------~~~llVv~N~~~ 620 (691)
....++|+.|++||+++|.|+.++...+ +++.+|..-+ +...++|++...++. .+.++||||.++
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~-----~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~ 115 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGP-----DQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATP 115 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-ST-----T--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SS
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCC-----CCCCcEEEEEecCCCccccccCCccCeEEEEEeCCC
Confidence 5568999999999999999999875543 5677876532 345799999998732 246999999999
Q ss_pred CcEEEEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCC-CCCceEEeeCCeEEEEEec
Q 005552 621 LPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPF-LDANLYPMLSYSSIILLLS 686 (691)
Q Consensus 621 ~~~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~p~s~~Vl~~~ 686 (691)
+++++++|...| |++.--- ....|-. +.+ +.+ ..+++++|||+|++||++.
T Consensus 116 ~~~t~~~~~~~g--~~Lhpvq--~~~~D~~----------v~~-a~~~~~~G~~tVPa~T~aVFv~~ 167 (168)
T PF11852_consen 116 EEQTFTVPGLAG--FQLHPVQ--AESSDPV----------VKQ-ASFDAANGTFTVPARTVAVFVQP 167 (168)
T ss_dssp S-EEEETGGGSS---EE-HHH--HTGSGTT----------GGG-TEEETTTTEEEE-TTEEEEEEEE
T ss_pred CeEEEEcCCcCc--eEechHH--hcccchh----------hhc-eeEecCCCeEEECCceEEEEEec
Confidence 999999997655 5442211 0111110 010 111 2368999999999999975
No 51
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.79 E-value=2e-08 Score=84.56 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=54.1
Q ss_pred cEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCc-eEEEEEcCccCCCCCCccCCCc
Q 005552 106 GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDM-LYGYKFDGKFSPQEGHYFDPTK 184 (691)
Q Consensus 106 g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~-~Y~y~i~g~~~~~~g~~~~~~~ 184 (691)
.++|++|||.|++|+|. +++++|+ .++|++ ...|+|+++++ +..|. .|+|.|+|.+
T Consensus 3 ~vtf~~~ap~a~~V~v~-G~fn~W~------~~~m~~---~~~G~w~~~~~-l~~G~y~Ykf~vdg~~------------ 59 (82)
T cd02861 3 PVVFAYRGPEADSVYLA-GSFNNWN------AIPMER---EGDGLWVVTVE-LRPGRYEYKFVVDGEW------------ 59 (82)
T ss_pred cEEEEEECCCCCEEEEE-eECCCCC------cccCEE---CCCCcEEEEEe-CCCCcEEEEEEECCEE------------
Confidence 48999999999999998 8999995 356753 34599999997 77777 7888898752
Q ss_pred cccCccccceec
Q 005552 185 IVLDPYAKAVIS 196 (691)
Q Consensus 185 ~~~DPYA~~~~~ 196 (691)
.+.||.+.....
T Consensus 60 ~~~DP~~~~~~~ 71 (82)
T cd02861 60 VIVDPNAAAYVD 71 (82)
T ss_pred eeCCCCCCceec
Confidence 258999886643
No 52
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.53 E-value=4.2e-07 Score=76.18 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=48.2
Q ss_pred CcEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCC-CCceEEEEEcCcc
Q 005552 105 GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDF-KDMLYGYKFDGKF 172 (691)
Q Consensus 105 ~g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~-~g~~Y~y~i~g~~ 172 (691)
++++|+||||.|++|.|+++. ++|. ..++|.+ ..+|+|++.+++.. .+..|+|++++..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~-~~~~-----~~~~~~~---~~~g~w~~~v~~~~~~~~~Y~~~v~~~~ 63 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSF-NGDT-----QLIPMTK---VEDGYWEVELPLPSPGKYQYKYVLDGGK 63 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEE-CCCC-----CcccCEE---CCCceEEEEEcCCCCCCeEEEEEEeCCC
Confidence 579999999999999999764 3321 3567753 46699999999988 9999999999864
No 53
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=98.37 E-value=4.6e-07 Score=78.50 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCCCcEEEEEEEccCCCEEEEEEeCCCC--cEEEEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCc
Q 005552 594 SDKSRFVAFTLIDSVKGEIYVAFNASHL--PVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDAN 671 (691)
Q Consensus 594 ~~~~~vlaf~r~~~~~~~llVv~N~~~~--~~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (691)
+++++|+||.|.+..++.++||+||+++ ..++.++.+.+++|+.+++|+.....+... ... . . +. .......
T Consensus 6 d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~g~~~-~~~-~-~-v~--~~~~g~~ 79 (95)
T PF02806_consen 6 DNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYGGSGK-GNS-G-E-VT--VDSNGRI 79 (95)
T ss_dssp EESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEEESSC-SET-S-E-EE--EETTSEE
T ss_pred cCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEECCccc-ccC-c-e-EE--EeeCCEE
Confidence 3567999999975322389999999998 345666665456999999998765544321 100 0 0 00 0002236
Q ss_pred eEEeeCCeEEEEEec
Q 005552 672 LYPMLSYSSIILLLS 686 (691)
Q Consensus 672 ~~~l~p~s~~Vl~~~ 686 (691)
+++|||+|++||..+
T Consensus 80 ~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 80 TVTLPPYSALVLKLK 94 (95)
T ss_dssp EEEESTTEEEEEEEE
T ss_pred EEEECCCEEEEEEEc
Confidence 899999999999875
No 54
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=97.11 E-value=0.0018 Score=53.95 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=41.3
Q ss_pred cEEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCc-eEEEEEcCc
Q 005552 106 GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDM-LYGYKFDGK 171 (691)
Q Consensus 106 g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~-~Y~y~i~g~ 171 (691)
-|+|+..+ .|++|+|. ++|++|+. .+||.+ ..++ |.+.++ +..|. .|+|.|+|.
T Consensus 3 ~v~f~~~~-~a~~V~v~-G~F~~W~~-----~~pm~~---~~~~-~~~~~~-L~~g~y~YkF~Vdg~ 57 (79)
T cd02859 3 PTTFVWPG-GGKEVYVT-GSFDNWKK-----KIPLEK---SGKG-FSATLR-LPPGKYQYKFIVDGE 57 (79)
T ss_pred EEEEEEcC-CCcEEEEE-EEcCCCCc-----cccceE---CCCC-cEEEEE-cCCCCEEEEEEECCE
Confidence 37899888 89999999 99999963 367764 3444 999996 66665 688888875
No 55
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=96.91 E-value=0.0007 Score=55.80 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=45.4
Q ss_pred CCCcEEEEEEEccCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEE
Q 005552 595 DKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYP 674 (691)
Q Consensus 595 ~~~~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (691)
..++|++|.|..+ ++.++|++|.+++++++++. ++.+++.... ...|++++.. ..-+..++
T Consensus 7 P~~gvYvYfR~~~-~~tVmVilN~n~~~~~ldl~-----ry~E~l~~~~-~~~diltg~~------------i~l~~~l~ 67 (78)
T PF10438_consen 7 PQDGVYVYFRYYD-GKTVMVILNKNDKEQTLDLK-----RYAEVLGGFT-SAKDILTGKT------------IDLSKNLT 67 (78)
T ss_dssp -BTTEEEEEEEES-SEEEEEEEE-SSS-EEEEGG-----GGHHHHTT---EEEETTT--E------------EE-SSEEE
T ss_pred ccCCEEEEEEEcC-CCEEEEEEcCCCCCeEEcHH-----HHHHhhCCCc-ceEECCCCCE------------EecCCcEE
Confidence 3578999999887 48999999999999999886 3444443322 2233333220 02245899
Q ss_pred eeCCeEEEEEe
Q 005552 675 MLSYSSIILLL 685 (691)
Q Consensus 675 l~p~s~~Vl~~ 685 (691)
|||+++.||+.
T Consensus 68 l~~~~~~ILel 78 (78)
T PF10438_consen 68 LPPKSVLILEL 78 (78)
T ss_dssp E-TTEEEEEEE
T ss_pred ECCCceEEEEC
Confidence 99999999973
No 56
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=96.75 E-value=0.013 Score=73.70 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=77.7
Q ss_pred HHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccc--------------------------cchhHHHHHH
Q 005552 505 CLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE--------------------------SKSDFFRFCC 558 (691)
Q Consensus 505 ~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~--------------------------~~~~l~~f~r 558 (691)
+-+|+||||=||+|.|+=. -|.-.||.|.++|+..... +..-=+..+.
T Consensus 1502 Lklt~PGVPD~YQG~E~wd------~SLVDPDNRRPVDf~~r~~~L~~l~~~~~~~~~~~~~~~l~~~~~dG~iKl~l~~ 1575 (1693)
T PRK14507 1502 LKLTLPGVPDTYQGTEFWD------FSLVDPDNRRPVDYAARARALEALGAMHAEGGHAACPDALLGSWQDGRIKLAVLW 1575 (1693)
T ss_pred HHHcCCCCCcccCCccccc------ccCcCCCCCCCCCHHHHHHHHHhhhhcccccccccchhhhhccCCCchHHHHHHH
Confidence 4589999999999999633 3344556677777652210 0011245688
Q ss_pred HHHHHHHhCccCC-CCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEeC-----------------CC
Q 005552 559 LLTKFRHECESLG-LSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNA-----------------SH 620 (691)
Q Consensus 559 ~Li~LRk~~paL~-~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N~-----------------~~ 620 (691)
++++||+++|.|. .|+|.. +.-.| ...+.++||.|..+ +..++||+=- ..
T Consensus 1576 ~~L~lRr~~p~lF~~G~Y~P---L~~~G--------~~~~hv~AFaR~~~-~~~~vvvvpR~~~~l~~~~~~~~~~~~~W 1643 (1693)
T PRK14507 1576 RLLADRRARPALFRDGDYRP---LKAEG--------ARAEHVVAFARRRG-GDDLVVAVPRLVARLAGEDGELPWSAEAW 1643 (1693)
T ss_pred HHHHHHHhChhhhccCCeeE---EeccC--------CccccEEEEEecCC-CcEEEEEEecchhhhhcccccCCcccCCC
Confidence 9999999999774 677765 22212 23568999999865 3555555311 22
Q ss_pred CcEEEEcCCCCCCceEEEecCC
Q 005552 621 LPVIISLPKRPGYRWEPLVDTS 642 (691)
Q Consensus 621 ~~~~v~lp~~~g~~w~~l~~t~ 642 (691)
....+.||...++.|+.++...
T Consensus 1644 ~dT~~~LP~~~~~~w~d~ltg~ 1665 (1693)
T PRK14507 1644 AGTVVPLVLPAGSRWVDVLTGR 1665 (1693)
T ss_pred CCCEEeCCCccCccceEeccCc
Confidence 3346888865556899999753
No 57
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=96.28 E-value=0.011 Score=45.91 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=29.7
Q ss_pred EEEEEccCCCEEEEEEeCCCCcEEEEcCCCCCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeE
Q 005552 601 AFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSS 680 (691)
Q Consensus 601 af~r~~~~~~~llVv~N~~~~~~~v~lp~~~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~ 680 (691)
+-.|.++ ++.+++++|+++++++++||. .++.++..... ...++|+|+.+
T Consensus 4 v~~R~~~-~~~y~F~~N~s~~~~~v~l~~----~~~dll~g~~~-------------------------~~~~~L~p~~v 53 (58)
T PF08533_consen 4 VTVREND-GGRYLFLLNFSDEPQTVTLPE----SYTDLLTGETV-------------------------SGGLTLPPYGV 53 (58)
T ss_dssp EEE-----ETTEEEEEE-SSS-EE----T----T-EEEES--------------------------------SEE-TTEE
T ss_pred EEEEEcC-CCEEEEEEECCCCCEEEEcCC----CceecccCcce-------------------------eeEEEECCCEE
Confidence 3445444 478999999999999999965 67888775321 12389999999
Q ss_pred EEEEe
Q 005552 681 IILLL 685 (691)
Q Consensus 681 ~Vl~~ 685 (691)
.||++
T Consensus 54 ~Vl~~ 58 (58)
T PF08533_consen 54 RVLKE 58 (58)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 99974
No 58
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=94.49 E-value=0.016 Score=65.74 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=61.1
Q ss_pred HHHhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccc-----------------cchhHHHHHHHHHHHHHhC
Q 005552 505 CLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE-----------------SKSDFFRFCCLLTKFRHEC 567 (691)
Q Consensus 505 ~lltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~-----------------~~~~l~~f~r~Li~LRk~~ 567 (691)
+-||+||||=||+|.|.-.. |--.||.+.++|+..... +.. =+..+.+++++|+++
T Consensus 714 lkltaPGVPD~YQGtE~wd~------SLVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~-K~~v~~~aL~lR~~~ 786 (889)
T COG3280 714 LKLTAPGVPDIYQGTELWDF------SLVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGI-KQAVTAAALRLRREH 786 (889)
T ss_pred HHHcCCCCCccccchhhhhc------cccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhH-HHHHHHHHHHHHHhc
Confidence 45899999999999996433 222344455565543210 001 133678999999999
Q ss_pred cc-CCCCCCCCCcceEeccCCCCCCCCCCCCcEEEEEEEccCCCEEEEEEeC
Q 005552 568 ES-LGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNA 618 (691)
Q Consensus 568 pa-L~~g~~~~~~~i~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~llVv~N~ 618 (691)
+. |..|+|... .-+| ...+.+++|.|... ++.+++|.+.
T Consensus 787 ~elF~~GdY~Pl---~~~G--------~~a~hviAFaR~~~-~~~~i~v~Pr 826 (889)
T COG3280 787 PELFAGGDYLPL---FAAG--------PAADHVIAFARGKD-DQFAITVAPR 826 (889)
T ss_pred hHhhcCCCeeee---cccC--------chhHHHHHHhhccC-CceeEEeehH
Confidence 97 788888762 1111 13468999999765 3667777664
No 59
>PLN03244 alpha-amylase; Provisional
Probab=94.28 E-value=0.052 Score=62.89 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=44.9
Q ss_pred CCCCeEEeCC-cEEEEEEcCCCCeEEEEeeeCCCccCCcee-eEeecccccCCCCCeEEEEEcC
Q 005552 96 TPFGATLRDG-GVNFSIFSSNAVSATLCLITLSDLQENKVT-EEIALDSFANKTGDVWHVFLKG 157 (691)
Q Consensus 96 ~~lGa~~~~~-g~~F~vwAP~A~~V~L~l~~~~~~~~~~~~-~~~~m~~~~~~~~gvW~~~v~g 157 (691)
..||.|...+ ++.|+.|||.|.-++|+ +|||+|+..+-. ++=-| .+.+-|+|++.++.
T Consensus 121 e~~g~~r~~~~~~~~~ewapga~~~~~~-gdfn~w~~~~~~~r~~~~---~~~~~g~~~~~~~~ 180 (872)
T PLN03244 121 EILGMHRHMEHRVDFMDWAPGARYCAII-GDFNGWSPTENAAREGHF---GHDDYGYWFIILED 180 (872)
T ss_pred hhhccccCcccCceeEeecCCcceeeee-ccccCCCccccccccccc---cccccceEEEEech
Confidence 3689998875 89999999999999998 999999764321 11113 24678999999986
No 60
>smart00632 Aamy_C Aamy_C domain.
Probab=93.69 E-value=0.34 Score=40.40 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=31.3
Q ss_pred CCCCcEEEEEEEccCCCEEEEEEeCCCCcEEEEcCC-CCCCceEEEecC
Q 005552 594 SDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPK-RPGYRWEPLVDT 641 (691)
Q Consensus 594 ~~~~~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp~-~~g~~w~~l~~t 641 (691)
.+++.+|+|.| ++..+|++|.+...++..+.. .+.+.|..++..
T Consensus 5 ~~~~~~laF~R----g~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g 49 (81)
T smart00632 5 DNGDNQIAFER----GSKGFVAINRSDSDLTITLQTSLPAGTYCDVISG 49 (81)
T ss_pred ECCCeEEEEEC----CCeEEEEEECCCCceEEEEeecCCCcceEEEecC
Confidence 34556999999 367889999988777766533 233478887764
No 61
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=93.63 E-value=0.12 Score=58.34 Aligned_cols=232 Identities=19% Similarity=0.203 Sum_probs=107.3
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHH---------hccccEEEEeccccccccCcccccccccCcccccccccCCCCCCChh
Q 005552 284 GNTFNCNHPVVRQFIVDCLRYWVT---------EMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPP 354 (691)
Q Consensus 284 g~dln~~~p~vr~~iid~l~yWl~---------eygVDGFRfD~~~~i~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~ 354 (691)
+||++=+||.|+.+-+..+-|.+. +-.+||||+||+..++-+ +++- .++.+.. . .|..
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdAD--lLqi---a~dyfka-a--Ygv~----- 209 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDAD--LLQI---AGDYFKA-A--YGVD----- 209 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-TH--HHHH---HHHHHHH-H--H-TT-----
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHH--HHHH---HHHHHHH-H--hCCC-----
Confidence 578999999999999999999996 788999999999999643 1111 0000000 0 0000
Q ss_pred HHHHHhcCCCCCCcEEEeecCCCCCcccccCCCCCcccceecCcccHHHHHHHcCCCCcHHHHHHHHcCCCccc--cCCC
Q 005552 355 LIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLY--QGGG 432 (691)
Q Consensus 355 ~~~~i~~dp~~~~~~liaE~w~~~~~~~~~~fp~~g~~~~wn~~f~d~~r~~~~g~~~~~~~~~~~l~g~~~~~--~~~~ 432 (691)
--++.++ .=+-|-|.|+...-..+.... +.-..++..++-.+...+.........+...+..+...- ....
T Consensus 210 ~~~a~An-----~HlSilE~ws~nd~~y~~~~g--~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~e 282 (809)
T PF02324_consen 210 KNDANAN-----KHLSILEAWSSNDPDYVKDTG--NPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTE 282 (809)
T ss_dssp TBHHHHC-----TC--EESSSTTTHHHHHHHTT--SSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--S
T ss_pred cChhhHh-----hhheeeeccccCChHHHhcCC--CceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCcC
Confidence 0011112 226788999876311111100 011234455666666666554333333333333321100 0011
Q ss_pred CCCCceEEEeecCCCCc---hhhhhhhccccccccCCCCCCCCCCCCCCccCCCCchhhHHHHHHHH-----------HH
Q 005552 433 RKPWNSINFVCAHDGFS---LADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRR-----------RQ 498 (691)
Q Consensus 433 ~~p~~~vnyl~nHD~~r---l~d~~~~~~k~n~~~G~~~~dg~~~n~sw~~g~~g~~~~~~~~~~r~-----------~~ 498 (691)
..+...-.|+.+||..- +++.+.- ++|.. .||-.. .-+..+.+.+.+-. -.
T Consensus 283 n~a~pNYsFvrAHDsevQ~vI~~II~~--~i~~~-----~dg~t~--------t~d~l~qAf~iYnaD~~~~~K~Yt~yN 347 (809)
T PF02324_consen 283 NEAQPNYSFVRAHDSEVQTVIAQIIKD--KINPN-----SDGLTF--------TLDQLKQAFEIYNADQKKTDKKYTQYN 347 (809)
T ss_dssp SESS-EEEES-BSSTTTHHHHHHHHHH--HT-TT-----TCTTC----------HHHHHHHHHHHHHHHTSSS-SSS-S-
T ss_pred CcccCceeeeecccHHHHHHHHHHHHh--hcCCc-----ccCccC--------CHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 22344556999999872 3444432 12211 111100 00000011111111 11
Q ss_pred HHHHHHHHHh-cCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhCcc
Q 005552 499 MRNFFLCLMV-SQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECES 569 (691)
Q Consensus 499 ~k~a~a~llt-spGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~pa 569 (691)
+-.+.|+||+ ---||-+||||=+-..++ | |. ....-++-+-.|++-|.++-+
T Consensus 348 iPsaYAllLtNKDTVPRVYYGDLYtDdGQ-----Y--------Ma------~KSpYyDaI~tLLKaRikYva 400 (809)
T PF02324_consen 348 IPSAYALLLTNKDTVPRVYYGDLYTDDGQ-----Y--------MA------TKSPYYDAITTLLKARIKYVA 400 (809)
T ss_dssp HHHHHHHHHH-SSSEEEEEHHHHBESSSS-----T--------TT------SB-TTHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHhCCCCCceEEecccccccch-----h--------hh------hcCchHHHHHHHHHHHHHhhc
Confidence 3456677776 568999999997654331 2 11 013347778899999998644
No 62
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=93.39 E-value=0.13 Score=60.82 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=39.9
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccccCcccc
Q 005552 285 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWD 330 (691)
Q Consensus 285 ~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~~~~~w~ 330 (691)
..++.++|+|.+.....+..|+++..|||+|+|.+..+.....+|+
T Consensus 222 ~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL~dP~~Yl~ 267 (825)
T TIGR02401 222 AGVRVEDPAVFDATHRLVLELVAEGLVDGLRIDHIDGLADPEGYLR 267 (825)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCCceEEeccccccCChHHHHH
Confidence 5688999999999999999999888999999999999965444444
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.17 E-value=0.82 Score=53.69 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=51.6
Q ss_pred CCCeEEeCCc-EEEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCCceEEEEEcCccCCC
Q 005552 97 PFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQ 175 (691)
Q Consensus 97 ~lGa~~~~~g-~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~Y~y~i~g~~~~~ 175 (691)
-||.|..++| +.+|+|-|.|.+|.|+.. . . . ...+|++ ....|+|...+|.. ..|++++.-.
T Consensus 29 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-~-~----~--~~~~~~~--~~~~g~f~~~~~~~---~~y~~~~~~~---- 91 (730)
T PRK12568 29 VLGPHPQADGRRQVRVLAPGAEAMGLIDG-R-G----K--LLARMQA--SPIDGVFEGILPAD---GPYRLRIVWP---- 91 (730)
T ss_pred hcCCcCCCCCcEEEEEECCCCcEEEEEec-C-C----c--cccccEe--cCCCCeEEEecCCC---CCEEEEEEeC----
Confidence 4899987888 799999999999999621 1 1 0 1125653 24569999999843 2488887621
Q ss_pred CCCccCCCccccCccccce
Q 005552 176 EGHYFDPTKIVLDPYAKAV 194 (691)
Q Consensus 176 ~g~~~~~~~~~~DPYA~~~ 194 (691)
.+ .....|||+...
T Consensus 92 ~~-----~~~~~dpy~~~~ 105 (730)
T PRK12568 92 DV-----VQEIEDPYAFAP 105 (730)
T ss_pred Cc-----eEEeeccccccc
Confidence 11 235789999754
No 64
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=88.25 E-value=1.6 Score=51.06 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=52.4
Q ss_pred EEEEEcCCCCeEEEEeeeCCC-ccCCceeeEeecccccCCCCCeEEEEEcCCCCCce-------EEEEEcCccCCCCCCc
Q 005552 108 NFSIFSSNAVSATLCLITLSD-LQENKVTEEIALDSFANKTGDVWHVFLKGDFKDML-------YGYKFDGKFSPQEGHY 179 (691)
Q Consensus 108 ~F~vwAP~A~~V~L~l~~~~~-~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g~~-------Y~y~i~g~~~~~~g~~ 179 (691)
.|++|+|.|+.+++.+|+..+ |+. .....+.|+ +-..|+|...+.|+..... |.|.+... +
T Consensus 70 iw~~~~p~~~~g~~y~yr~~g~~~~-~~g~~f~~~---k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~-----~-- 138 (697)
T COG1523 70 IWHLWLPGAKPGQVYGYRVHGPYDP-EEGHRFDPN---KLLLDPYAKALDGDLKWGTPALFGYYYGYQITNL-----S-- 138 (697)
T ss_pred EEEEEcCCCceeeEEEEecCCCcCC-ccCeeeccc---cccccceeEEeccccccCcccccccccccccccc-----C--
Confidence 999999999999999998655 332 223455554 3467999999998765443 33343311 0
Q ss_pred cCCCccccCccccceeccc
Q 005552 180 FDPTKIVLDPYAKAVISRA 198 (691)
Q Consensus 180 ~~~~~~~~DPYA~~~~~~~ 198 (691)
+.....|||+|++....
T Consensus 139 --~~~~~~~~~~Ksvv~~~ 155 (697)
T COG1523 139 --PDRDSADPYPKSVVIDP 155 (697)
T ss_pred --ccccccccCCceEEecc
Confidence 11457888998887665
No 65
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=86.68 E-value=0.72 Score=49.00 Aligned_cols=32 Identities=38% Similarity=0.664 Sum_probs=30.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccccEEEEe
Q 005552 286 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFD 317 (691)
Q Consensus 286 dln~~~p~vr~~iid~l~yWl~eygVDGFRfD 317 (691)
-||-.+|+||+||++.++--++.|.|||+.||
T Consensus 130 ~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlD 161 (311)
T PF02638_consen 130 WLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLD 161 (311)
T ss_pred EECCCCHHHHHHHHHHHHHHHhcCCCCeEEec
Confidence 37889999999999999999999999999999
No 66
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=85.91 E-value=3 Score=36.91 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=40.6
Q ss_pred CCCeEEeCCcEEEEEEcCC--CCeEEEEeeeCCCccCCceeeEeecccccCC-CCCeEEEEEcCCCCCceEEEEEc
Q 005552 97 PFGATLRDGGVNFSIFSSN--AVSATLCLITLSDLQENKVTEEIALDSFANK-TGDVWHVFLKGDFKDMLYGYKFD 169 (691)
Q Consensus 97 ~lGa~~~~~g~~F~vwAP~--A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~-~~gvW~~~v~g~~~g~~Y~y~i~ 169 (691)
|+|| +.++|||+++. +++|.|++.+... . ++ ...++|.+.... ....|++.|+-...-..|.|+|.
T Consensus 12 p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~-~-~~-~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l~ 80 (116)
T cd02857 12 PYGA----DTLHIRLRTKKGDVAKVYLRYGDPYD-K-GE-EEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFELV 80 (116)
T ss_pred EcCC----CEEEEEEEecCCCccEEEEEEECCCC-C-CC-ceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEEE
Confidence 6776 67999999875 5788888664421 1 11 136788653221 12579999974443344666664
No 67
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=81.74 E-value=4 Score=36.69 Aligned_cols=68 Identities=10% Similarity=0.138 Sum_probs=46.8
Q ss_pred eCCcEEEEEEcC--CCCeEEEEeeeCCCccCCceeeEeeccccc-CCCCCeEEEEEcCCCCCceEEEEEcC
Q 005552 103 RDGGVNFSIFSS--NAVSATLCLITLSDLQENKVTEEIALDSFA-NKTGDVWHVFLKGDFKDMLYGYKFDG 170 (691)
Q Consensus 103 ~~~g~~F~vwAP--~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~-~~~~gvW~~~v~g~~~g~~Y~y~i~g 170 (691)
.++.+++||++. .+++|.|+-.+..++.........+|++.. ...-+.|++.|+-......|.|+|.+
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~ 89 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELED 89 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEe
Confidence 456688888875 677999987777766333334677887632 23447999999866666889999874
No 68
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=79.27 E-value=2.3 Score=45.86 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=33.3
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEecccc
Q 005552 285 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASI 321 (691)
Q Consensus 285 ~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~ 321 (691)
.-+|+.||++|+...+-++.+++++|||||-+|....
T Consensus 152 ~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 152 LMLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCc
Confidence 3589999999999999999999899999999996643
No 69
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=74.20 E-value=3.4 Score=43.72 Aligned_cols=36 Identities=17% Similarity=0.421 Sum_probs=32.9
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccc
Q 005552 285 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320 (691)
Q Consensus 285 ~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~ 320 (691)
.-+|+.||++|+++.+.++..+.++|||||-+|...
T Consensus 130 ~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 130 AVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred ceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 458999999999999999999999999999999654
No 70
>PRK14705 glycogen branching enzyme; Provisional
Probab=72.30 E-value=8.7 Score=48.02 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=51.1
Q ss_pred CCCeEEeCCcE-EEEEEcCCCCeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcCC--CCCceEEEEEcCccC
Q 005552 97 PFGATLRDGGV-NFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD--FKDMLYGYKFDGKFS 173 (691)
Q Consensus 97 ~lGa~~~~~g~-~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~--~~g~~Y~y~i~g~~~ 173 (691)
-||.|..++|+ .+|+|-|.|.+|.|+.. . ...+|++ ...|+|...+|+. .....|+++++-.
T Consensus 522 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~~--~--------~~~~~~~---~~~g~~~~~~~~~~~~~~~~y~~~~~~~-- 586 (1224)
T PRK14705 522 VLGAHLDDHGHVTVRTVKHLAKAVSVVTA--A--------GRVPMTH---EAHGVWAAVLEPLQAGHVPDYRLEVTYD-- 586 (1224)
T ss_pred hcCCcCCCCceEEEEEECCCCeEEEEEeC--C--------Cceeeee---CCCCEEEEeccccccCCCCCeEEEEEeC--
Confidence 48999878884 79999999999999731 1 1235652 4569999999853 1223488887621
Q ss_pred CCCCCccCCCccccCccccce
Q 005552 174 PQEGHYFDPTKIVLDPYAKAV 194 (691)
Q Consensus 174 ~~~g~~~~~~~~~~DPYA~~~ 194 (691)
.+. .....|||+...
T Consensus 587 --~~~----~~~~~d~y~~~~ 601 (1224)
T PRK14705 587 --GAE----PVTIDDPYHYLP 601 (1224)
T ss_pred --Ccc----ceEeccccccCC
Confidence 111 135789999653
No 71
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=71.52 E-value=5.3 Score=43.81 Aligned_cols=37 Identities=19% Similarity=0.465 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccEEEEecccccc
Q 005552 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT 323 (691)
Q Consensus 287 ln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~ 323 (691)
||+.+|+|+++|.+.+.-.++++|||.|.+|....+.
T Consensus 160 LD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~ 196 (394)
T PF02065_consen 160 LDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDIT 196 (394)
T ss_dssp B-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TT
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCC
Confidence 8999999999999999999999999999999887764
No 72
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=67.37 E-value=1.1e+02 Score=38.87 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEecccccc
Q 005552 290 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT 323 (691)
Q Consensus 290 ~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~ 323 (691)
++|.++++|.+-.+-=+ --++|||+|-.++-+
T Consensus 487 DsP~LW~~M~~Y~~~~A--kiF~G~RiDNCHSTP 518 (1464)
T TIGR01531 487 DSPYLWQHMKEYTEMTA--RIFDGVRIDNCHSTP 518 (1464)
T ss_pred CCHHHHHHHHHHHHHHH--HhhcceeeecccCCc
Confidence 56888888888777666 456899999887764
No 73
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=66.17 E-value=18 Score=31.25 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=36.7
Q ss_pred EEEEEEcCCC---CeEEEEeeeC---CCccCCceeeEeecccccCCCCCeEEEEEcCCC--CCceEEEEEc
Q 005552 107 VNFSIFSSNA---VSATLCLITL---SDLQENKVTEEIALDSFANKTGDVWHVFLKGDF--KDMLYGYKFD 169 (691)
Q Consensus 107 ~~F~vwAP~A---~~V~L~l~~~---~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~--~g~~Y~y~i~ 169 (691)
++|+|-.|.- +.|.|+ ++. ++|+ +...++|.. ..+..|++.++-.. ....|+|.+.
T Consensus 2 v~f~v~~~~~~~Ge~v~i~-Gs~~~LG~W~---~~~a~~l~~---~~~~~W~~~v~~p~~~~~ieYKyvi~ 65 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVT-GSSPELGNWD---PQKALKLSD---VGFPIWEADIDISKDSFPFEYKYIIA 65 (99)
T ss_pred EEEEEEcCccCCCCEEEEE-EChHHhCCCC---ccccccCCC---CCCCcEEEEEEeCCCCccEEEEEEEE
Confidence 7899998853 467776 553 4554 345678853 45689998875322 2457888875
No 74
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=61.44 E-value=21 Score=30.81 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=34.4
Q ss_pred EEEEEEcCCC--CeEEEEeeeCCCccCCceeeEeecccccCCCCCeEEEEEcC-CCCCceEEEEEc
Q 005552 107 VNFSIFSSNA--VSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKG-DFKDMLYGYKFD 169 (691)
Q Consensus 107 ~~F~vwAP~A--~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g-~~~g~~Y~y~i~ 169 (691)
++|++-+++. +.|.|+ ++......+.+...++|.. .++.+|++.+.- ......|+|.+.
T Consensus 2 v~F~i~~~t~~Ge~l~v~-Gs~~~LG~W~~~~a~~m~~---~~~~~W~~~v~lp~~~~veYKY~i~ 63 (100)
T cd05817 2 VTFKIHYPTQFGEAVYIS-GNCNQLGNWNPSKAKRMQW---NEGDLWTVDVGIPESVYIEYKYFVS 63 (100)
T ss_pred EEEEEEEEcCCCCEEEEE-eCcHHHCCCCccccCcccC---CCCCCEEEEEEECCCCcEEEEEEEE
Confidence 5677766654 466665 5532222223445677753 456799887732 134477888774
No 75
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=58.22 E-value=11 Score=39.77 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=33.9
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccc
Q 005552 285 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 324 (691)
Q Consensus 285 ~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~ 324 (691)
.-+|+.||++|+++.+.++.++ ++|||||-+|....+..
T Consensus 125 ~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~~e~~p~ 163 (308)
T cd06593 125 GIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDFGERIPT 163 (308)
T ss_pred ccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCCCCCCCc
Confidence 3589999999999999999888 69999999998776543
No 76
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.41 E-value=11 Score=41.32 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccEEEEecccc
Q 005552 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASI 321 (691)
Q Consensus 287 ln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~ 321 (691)
||=.+|+||+||.+.+.--++.|.|||.-||---.
T Consensus 176 ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy 210 (418)
T COG1649 176 LDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFY 210 (418)
T ss_pred eCCCChHHHHHHHHHHHHHHhCCCCCceecceeec
Confidence 77889999999999999999999999999995544
No 77
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=53.70 E-value=15 Score=42.16 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccc
Q 005552 287 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 322 (691)
Q Consensus 287 ln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i 322 (691)
+|-.|++-|+||++-+...++++|+|||.+|.++..
T Consensus 235 ~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~ 270 (559)
T PF13199_consen 235 MDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNR 270 (559)
T ss_dssp B-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--E
T ss_pred ecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCC
Confidence 578899999999999999999999999999999954
No 78
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=50.97 E-value=36 Score=28.81 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=33.6
Q ss_pred EEEEEEcCC--CCeEEEEeee---CCCccCCceeeEeecccccCCCCCeEEEEEcCC-CCCceEEEEEc
Q 005552 107 VNFSIFSSN--AVSATLCLIT---LSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-FKDMLYGYKFD 169 (691)
Q Consensus 107 ~~F~vwAP~--A~~V~L~l~~---~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~-~~g~~Y~y~i~ 169 (691)
++|+|=+.+ .++|.|+ ++ .++|+. ...++|.. ..++.|++.+.-. .....|+|.+.
T Consensus 3 v~F~v~~~t~~ge~l~v~-G~~~~lG~W~~---~~a~~l~~---~~~~~W~~~v~l~~~~~~eYKy~~~ 64 (95)
T cd05808 3 VTFNVTATTVWGQNVYVV-GNVPELGNWSP---ANAVALSA---ATYPVWSGTVDLPAGTAIEYKYIKK 64 (95)
T ss_pred EEEEEEEECCCCCEEEEE-eCcHHhCCCCh---hhCccCCC---CCCCCEEEEEEeCCCCeEEEEEEEE
Confidence 567775543 4677776 64 456653 34567753 4568998887421 22466777653
No 79
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=49.64 E-value=18 Score=38.56 Aligned_cols=38 Identities=11% Similarity=0.366 Sum_probs=32.9
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEecccc
Q 005552 284 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASI 321 (691)
Q Consensus 284 g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~ 321 (691)
+.-+|+.||++|+...+-++..+.++|||||=+|.-..
T Consensus 130 ~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 167 (317)
T cd06594 130 CGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEY 167 (317)
T ss_pred ceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCC
Confidence 34589999999999999999987799999999996543
No 80
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.27 E-value=24 Score=37.97 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=33.2
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhccccEEEEecccc
Q 005552 284 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASI 321 (691)
Q Consensus 284 g~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~ 321 (691)
+.-+|+.||++|+...+.++..++++|||||=+|....
T Consensus 129 ~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 129 TVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred CcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 34489999999999999999999889999999997653
No 81
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=46.59 E-value=22 Score=37.78 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=32.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccc
Q 005552 286 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320 (691)
Q Consensus 286 dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~ 320 (691)
-+|+.||++++...+-++..+.++|||||=+|...
T Consensus 126 ~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 126 YPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred ccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 48999999999999999998889999999999654
No 82
>PLN02808 alpha-galactosidase
Probab=45.34 E-value=1.3e+02 Score=33.01 Aligned_cols=73 Identities=12% Similarity=0.000 Sum_probs=43.2
Q ss_pred CcEEEEEEEccCCCEEEEEEeCCCCcEEEEcCCC----CC-CceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCc
Q 005552 597 SRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKR----PG-YRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDAN 671 (691)
Q Consensus 597 ~~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp~~----~g-~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (691)
+.+-+|.+...++...++++|.+.++++++++.. .+ ..|++ .|....... ..+....
T Consensus 308 ~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~~~~lgl~~~~~~~v---------rDlWs~~~~---------g~~~~~~ 369 (386)
T PLN02808 308 GDLEVWAGPLSKKRVAVVLWNRGSSRATITARWSDIGLNSSAVVNA---------RDLWAHSTQ---------SSVKGQL 369 (386)
T ss_pred CCeEEEEEECCCCCEEEEEEECCCCCEEEEEEHHHhCCCCCCceEE---------EECCCCCcc---------CcccceE
Confidence 4567787776555678889999998887765531 11 12221 111111100 0012235
Q ss_pred eEEeeCCeEEEEEecC
Q 005552 672 LYPMLSYSSIILLLSP 687 (691)
Q Consensus 672 ~~~l~p~s~~Vl~~~~ 687 (691)
+.+|+|.+++||..+|
T Consensus 370 ~~~v~pHg~~~~rlt~ 385 (386)
T PLN02808 370 SALVESHACKMYVLTP 385 (386)
T ss_pred EEEECCceEEEEEEeC
Confidence 6899999999999876
No 83
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=44.14 E-value=47 Score=28.29 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=34.0
Q ss_pred EEEEEEcCC--CCeEEEEeeeCCCccCCceeeEeecccccC-CCCCeEEEEEcCCCCC--ceEEEEEc
Q 005552 107 VNFSIFSSN--AVSATLCLITLSDLQENKVTEEIALDSFAN-KTGDVWHVFLKGDFKD--MLYGYKFD 169 (691)
Q Consensus 107 ~~F~vwAP~--A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~-~~~gvW~~~v~g~~~g--~~Y~y~i~ 169 (691)
++|+|-+.. .++|.|+ ++......+.+...++|..... ....+|++.+. ...+ ..|+|.+.
T Consensus 4 V~F~v~~~~~~ge~v~i~-Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~-lp~~~~~eYKy~i~ 69 (96)
T PF00686_consen 4 VTFRVNYQTQPGESVYIV-GSCPELGNWDPKKAVPLQWNEGTENYPIWSATVD-LPAGTPFEYKYVIK 69 (96)
T ss_dssp EEEEESE---TTEEEEEE-ESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEE-EETTSEEEEEEEEE
T ss_pred EEEEEEeECCCCCEEEEE-ECcHHhCCCChHhccccccccCCCCCCeEEEEEE-CcCCCEEEEEEEEE
Confidence 678883333 2466666 6654322333445788864210 14589999984 3334 46777764
No 84
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.82 E-value=28 Score=36.98 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=30.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccc
Q 005552 286 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320 (691)
Q Consensus 286 dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~ 320 (691)
-+|+.||++|++..+.++.-+.+.|||||=+|...
T Consensus 134 ~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 134 FVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred eecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 58999999999999999777779999999999553
No 85
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.13 E-value=30 Score=36.84 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=30.6
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccc
Q 005552 285 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320 (691)
Q Consensus 285 ~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~ 320 (691)
--+|+.||++|+...+.++.. .++|||||=+|...
T Consensus 130 ~~~Dftnp~a~~w~~~~~~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 130 GLIDWFDPAAQAWFHDNYKKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred cccCCCCHHHHHHHHHHHHHh-hhCCccEEEecCCC
Confidence 358999999999999999887 48999999999664
No 86
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=40.82 E-value=35 Score=36.34 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=30.3
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccc
Q 005552 285 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 320 (691)
Q Consensus 285 ~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~ 320 (691)
.-+|+.||++|+...+.++.-+.++|||||=+|...
T Consensus 124 ~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 124 RFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 469999999999988777655669999999999764
No 87
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=40.38 E-value=61 Score=29.03 Aligned_cols=59 Identities=19% Similarity=0.337 Sum_probs=36.4
Q ss_pred cEEEEEEcC---CCCeEEEEeee---CCCccCCceeeEeecccccCCCCCeEEEEEcCC-CCCceEEEEEc
Q 005552 106 GVNFSIFSS---NAVSATLCLIT---LSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-FKDMLYGYKFD 169 (691)
Q Consensus 106 g~~F~vwAP---~A~~V~L~l~~---~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~-~~g~~Y~y~i~ 169 (691)
.++|+|-+| --+.|.|+ ++ .++|+. ...++|... ....+.|++.+.-. ..-..|+|-+.
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~-G~~~~LG~W~~---~~a~~l~~~-~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVV-GSLPVLGNWQP---EKAVPLEKE-DDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred eEEEEEeeccCCCCCEEEEE-eChHHhCCCCH---HhCeeCccC-CCcCCccEEEEEECCCCeEEEEEEEE
Confidence 378999886 23466665 66 566753 356788642 12568998887421 22467777764
No 88
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=37.09 E-value=48 Score=35.14 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccccEEEEecc
Q 005552 288 NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 319 (691)
Q Consensus 288 n~~~p~vr~~iid~l~yWl~eygVDGFRfD~~ 319 (691)
...++.-|+.+++++.-++++|++||+=||--
T Consensus 88 ~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 88 DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 35677888999999999999999999999844
No 89
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=36.55 E-value=43 Score=25.86 Aligned_cols=55 Identities=15% Similarity=0.003 Sum_probs=31.9
Q ss_pred EEEEEeCCCCcEEEEcCCC-CCCceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceEEeeCCeEEEE
Q 005552 612 IYVAFNASHLPVIISLPKR-PGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIIL 683 (691)
Q Consensus 612 llVv~N~~~~~~~v~lp~~-~g~~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~s~~Vl 683 (691)
|+|++|.++......+... +|..|..++...... +. .+ -..-..|++||.|..|.
T Consensus 1 L~v~iN~~~~~k~~~Vgt~~ag~~~~D~tGn~~~~---vt-id-------------~dG~~~f~v~~~s~SVW 56 (57)
T PF09154_consen 1 LAVYINGSAGWKRMWVGTNWAGKTFYDYTGNSSET---VT-ID-------------EDGWGEFPVPPGSVSVW 56 (57)
T ss_dssp EEEEEE-SSSEEEEEEEGGGTTEEEEETTSSSSSE---EE-E--------------TTSEEEEEE-TTEEEEE
T ss_pred CEEEEeCCCCeEEEEEccccCCCEEEEccCCCCCe---EE-EC-------------CCeEEEEEECCCEEEEe
Confidence 4677799988887777653 455666655443211 10 00 02347899999988775
No 90
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=36.51 E-value=38 Score=37.71 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=31.7
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccc
Q 005552 285 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 322 (691)
Q Consensus 285 ~dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i 322 (691)
.-+|+.||+++++..+.++..+..+|||||-+|.....
T Consensus 145 ~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 145 GFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp EEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTB
T ss_pred cccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcc
Confidence 45899999999999999999998889999999985544
No 91
>smart00642 Aamy Alpha-amylase domain.
Probab=35.68 E-value=12 Score=35.81 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=21.6
Q ss_pred EEeecCccccCCCCCCCCcchhccccccccc
Q 005552 243 EVHVRGFTRHESSKTEHPGTYLGVVEKLDHL 273 (691)
Q Consensus 243 ElHVr~Ft~~~~~~~~~~Gtf~g~~ekLdyL 273 (691)
++.+++|..+..++ .|+|++++++|+||
T Consensus 1 qi~~~~F~~~~~~~---~G~~~gi~~~l~yl 28 (166)
T smart00642 1 QIYPDRFADGNGDG---GGDLQGIIEKLDYL 28 (166)
T ss_pred CeeeccccCCCCCC---CcCHHHHHHHHHHH
Confidence 35677887755444 69999999999988
No 92
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=35.55 E-value=40 Score=36.19 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=31.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccccEEEEecccc
Q 005552 286 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASI 321 (691)
Q Consensus 286 dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~ 321 (691)
-+|+.||+++++..+.++..+ ++|||||=+|....
T Consensus 126 ~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~Ep 160 (339)
T cd06604 126 FPDFTNPKVREWWGSLYKKFV-DLGVDGIWNDMNEP 160 (339)
T ss_pred ccCCCChHHHHHHHHHHHHHh-hCCCceEeecCCCc
Confidence 479999999999999999877 89999999997653
No 93
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=35.27 E-value=1.1e+02 Score=26.26 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=32.9
Q ss_pred EEEEEEcCCC--CeEEEEeeeC---CCccCCceeeEeecccccCCCCCeEEEEEcC-CCCCceEEEEEc
Q 005552 107 VNFSIFSSNA--VSATLCLITL---SDLQENKVTEEIALDSFANKTGDVWHVFLKG-DFKDMLYGYKFD 169 (691)
Q Consensus 107 ~~F~vwAP~A--~~V~L~l~~~---~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g-~~~g~~Y~y~i~ 169 (691)
++|++=..+. +++.|+ ++. ++|+ +...++|......++..|++.+.- ......|+|-+.
T Consensus 2 l~f~i~~~t~~Ge~l~v~-G~~~~LG~W~---~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v~ 66 (101)
T cd05815 2 LSFKLPYYTQWGQSLLIC-GSDPLLGSWN---VKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYVV 66 (101)
T ss_pred EEEEEEEEccCCCEEEEE-cChHHcCCcC---hHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEEE
Confidence 4566654444 456555 443 4454 445778853111233589888742 134577888873
No 94
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=34.74 E-value=45 Score=32.62 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEecc
Q 005552 289 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 319 (691)
Q Consensus 289 ~~~p~vr~~iid~l~yWl~eygVDGFRfD~~ 319 (691)
..++..|+.+++++.-++++|++||+=+|--
T Consensus 83 ~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E 113 (210)
T cd00598 83 ASDPASRAAFANSLVSFLKTYGFDGVDIDWE 113 (210)
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCCceEEeee
Confidence 4678888989999999999999999999854
No 95
>PLN02692 alpha-galactosidase
Probab=34.30 E-value=81 Score=34.76 Aligned_cols=72 Identities=14% Similarity=0.031 Sum_probs=43.8
Q ss_pred CcEEEEEEEccCCCEEEEEEeCCCCcEEEEcCCC----CC-C--ceEEEecCCCCCCCCCcCCC-CchhHHHhhhcCCCC
Q 005552 597 SRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKR----PG-Y--RWEPLVDTSKPEPFDFLSSD-LPAKEIAIKQYAPFL 668 (691)
Q Consensus 597 ~~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp~~----~g-~--~w~~l~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 668 (691)
+.+-+|.+....+...++++|.++.++++.++.. .+ . +.+.|.. .. +.. .+.
T Consensus 332 ~~~~vW~k~l~~g~~aVal~N~~~~~~~i~~~~~~lgl~~~~~~~vrDLW~-----------~~~~g~---------~~~ 391 (412)
T PLN02692 332 GDLEIWAGPLSGYRVALLLLNRGPWRNSITANWDDIGIPANSIVEARDLWE-----------HKTLKQ---------HFV 391 (412)
T ss_pred CCeEEEEEECCCCCEEEEEEECCCCCEEEEEeHHHhCCCCCCceEEEECCC-----------CCccCc---------ccc
Confidence 3566777766544568888999998888776631 11 1 1222221 11 000 012
Q ss_pred CCceEEeeCCeEEEEEecCC
Q 005552 669 DANLYPMLSYSSIILLLSPD 688 (691)
Q Consensus 669 ~~~~~~l~p~s~~Vl~~~~~ 688 (691)
...+.+|+|..+++|+.+|+
T Consensus 392 ~~~~~~v~~Hg~~l~rl~~~ 411 (412)
T PLN02692 392 GNLTATVDSHACKMYILKPI 411 (412)
T ss_pred ceEEEEECCceEEEEEEecC
Confidence 34568999999999998875
No 96
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=33.03 E-value=48 Score=35.28 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEec
Q 005552 290 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 318 (691)
Q Consensus 290 ~~p~vr~~iid~l~yWl~eygVDGFRfD~ 318 (691)
.++..|+-+++++.-|++++++||+=+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46888999999999999999999999983
No 97
>PRK10658 putative alpha-glucosidase; Provisional
Probab=30.27 E-value=52 Score=38.87 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=32.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccccEEEEecccccc
Q 005552 286 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT 323 (691)
Q Consensus 286 dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~ 323 (691)
-+|+.||++|+...+-++..+ ++|||||-.|....++
T Consensus 385 ~~Dftnp~ar~W~~~~~~~l~-d~Gvdgfw~D~gE~~p 421 (665)
T PRK10658 385 IVDFTNPDACKWYADKLKGLL-DMGVDCFKTDFGERIP 421 (665)
T ss_pred eecCCCHHHHHHHHHHHHHHH-hcCCcEEEecCCceee
Confidence 489999999999999999977 8999999999766554
No 98
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=30.11 E-value=4.6e+02 Score=33.55 Aligned_cols=20 Identities=25% Similarity=0.116 Sum_probs=16.5
Q ss_pred CCceEEEeecCCCCchhhhh
Q 005552 435 PWNSINFVCAHDGFSLADLV 454 (691)
Q Consensus 435 p~~~vnyl~nHD~~rl~d~~ 454 (691)
+.++|.|+..||+.|+..-.
T Consensus 1116 ~~~~va~t~THD~~Tl~Gww 1135 (1221)
T PRK14510 1116 NALAAAYVGTHDLPTLAGWW 1135 (1221)
T ss_pred CCCcEEECCCCCCHHHHHHH
Confidence 56889999999999987644
No 99
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=29.00 E-value=48 Score=30.59 Aligned_cols=41 Identities=12% Similarity=0.317 Sum_probs=28.6
Q ss_pred HhcCCceeEecCCccccCCCCCCCCCCCCCCccccccCcccccchhHHHHHHHHHHHHHhCccCCC
Q 005552 507 MVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGL 572 (691)
Q Consensus 507 ltspGiP~iy~G~E~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~f~r~Li~LRk~~paL~~ 572 (691)
--=||||+|.-|+.+... ...+.+|++.|-++-+..|.|..
T Consensus 84 pYPPGIPll~pGE~it~~-------------------------~~~~i~yl~~l~~~~~~fpGf~~ 124 (136)
T PF03711_consen 84 PYPPGIPLLVPGERITEE-------------------------TEEIIDYLLALQEFGAHFPGFEP 124 (136)
T ss_dssp ECTTTS-SB-TTEEB-ST-------------------------THHHHHHHHHHHHHHTCSTTS--
T ss_pred ecCCCCcEECCccccccc-------------------------hHHHHHHHHHHHHhCCcCcCCCC
Confidence 345899999999987542 16788999999998888887753
No 100
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=28.97 E-value=60 Score=34.54 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEec
Q 005552 290 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 318 (691)
Q Consensus 290 ~~p~vr~~iid~l~yWl~eygVDGFRfD~ 318 (691)
.++..|+.+++++.-|+++|++||+-+|-
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDw 115 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDW 115 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECC
Confidence 56788999999999999999999999984
No 101
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=28.89 E-value=60 Score=34.43 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEe
Q 005552 290 NHPVVRQFIVDCLRYWVTEMHVDGFRFD 317 (691)
Q Consensus 290 ~~p~vr~~iid~l~yWl~eygVDGFRfD 317 (691)
.++..|+-+++++.-++++||+||+-+|
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD 115 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLE 115 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEe
Confidence 5688999999999999999999999998
No 102
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=27.67 E-value=63 Score=34.13 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEecc
Q 005552 289 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 319 (691)
Q Consensus 289 ~~~p~vr~~iid~l~yWl~eygVDGFRfD~~ 319 (691)
..++..|+-+++++.-++++||+||+-+|--
T Consensus 82 l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE 112 (313)
T cd02874 82 LSNPEARQRLINNILALAKKYGYDGVNIDFE 112 (313)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 4578889999999999999999999999853
No 103
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=27.62 E-value=61 Score=34.11 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEe
Q 005552 290 NHPVVRQFIVDCLRYWVTEMHVDGFRFD 317 (691)
Q Consensus 290 ~~p~vr~~iid~l~yWl~eygVDGFRfD 317 (691)
.++..|+-+++++.-|+++|++||+-+|
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiD 115 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLD 115 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeec
Confidence 5788999999999999999999999998
No 104
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=27.59 E-value=1.2e+02 Score=36.57 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=29.5
Q ss_pred cCCCCCHHHHHHHHHHH-HHHHHhccccEEEEeccccc
Q 005552 286 TFNCNHPVVRQFIVDCL-RYWVTEMHVDGFRFDLASIM 322 (691)
Q Consensus 286 dln~~~p~vr~~iid~l-~yWl~eygVDGFRfD~~~~i 322 (691)
-+||.||++|+...+.. .+++ ++|||||=.|.-...
T Consensus 381 ~~DFtnp~~r~Ww~~~~~~~l~-d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 381 FPDFTNPDAREWWASDKKKNLL-DLGVDGFWNDMNEPE 417 (772)
T ss_pred ccCCCCHHHHHHHHHHHHhHHH-hcCccEEEccCCCCc
Confidence 48999999999999544 4555 999999999976554
No 105
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=27.54 E-value=1.4e+02 Score=25.64 Aligned_cols=57 Identities=7% Similarity=0.100 Sum_probs=30.9
Q ss_pred EEEEEEcCCC---CeEEEEee---eCCCccCCceeeEeecccccCCCCCeEEEEEcCCCCC--ceEEEEEc
Q 005552 107 VNFSIFSSNA---VSATLCLI---TLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKD--MLYGYKFD 169 (691)
Q Consensus 107 ~~F~vwAP~A---~~V~L~l~---~~~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~g~~~g--~~Y~y~i~ 169 (691)
|+|+|-.+.- +.|.|+ + +.++|+.. ..+|..+....++.|++.+. +..| ..|+|.+.
T Consensus 5 v~f~v~~~~t~~G~~v~v~-Gs~~~LG~W~~~----~~~~~~~~~~~~~~W~~~~~-lp~~~~veyKyv~~ 69 (99)
T cd05809 5 QTFVVKNVPTTIGETVYIT-GSRAELGNWDTK----QYPIQLYYNSHSNDWRGTVH-LPAGRNIEFKAIKK 69 (99)
T ss_pred EEEEEcccccCCCCEEEEE-eChHHhCCCChh----hhhhccccCCCCCCEEEEEE-ecCCCcEEEEEEEE
Confidence 6777754443 577775 6 34567532 22333221234689988874 3333 45666553
No 106
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=27.46 E-value=66 Score=34.16 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEecccc
Q 005552 290 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASI 321 (691)
Q Consensus 290 ~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~ 321 (691)
.++.-|+-+++++.-|+++|++||+=||--..
T Consensus 95 ~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~ 126 (343)
T PF00704_consen 95 SNPAKRQNFINNIVSFLKKYGFDGIDIDWEYP 126 (343)
T ss_dssp HSHHHHHHHHHHHHHHHHHHT-SEEEEEESST
T ss_pred ccHHHHHHHHHhhhhhhcccCcceeeeeeeec
Confidence 35678899999999999999999999985443
No 107
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=27.07 E-value=67 Score=32.81 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEec
Q 005552 289 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 318 (691)
Q Consensus 289 ~~~p~vr~~iid~l~yWl~eygVDGFRfD~ 318 (691)
..++..|+-+++++.-++++|++||+=+|-
T Consensus 78 ~~~~~~r~~fi~~lv~~~~~~~~DGIdiDw 107 (253)
T cd06545 78 LNDPAKRKALVDKIINYVVSYNLDGIDVDL 107 (253)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCceeEEe
Confidence 457889999999999999999999999984
No 108
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=26.55 E-value=1.8e+02 Score=24.28 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=32.3
Q ss_pred EEEEEEcCC--CCeEEEEeeeCCCccCCceeeEeecccccCCC-CCeEEEEEcCC---CCCceEEEEEc
Q 005552 107 VNFSIFSSN--AVSATLCLITLSDLQENKVTEEIALDSFANKT-GDVWHVFLKGD---FKDMLYGYKFD 169 (691)
Q Consensus 107 ~~F~vwAP~--A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~~~-~gvW~~~v~g~---~~g~~Y~y~i~ 169 (691)
++|++-+.. -+.+.|+ ++......+.+...++|.. .. ++.|++.++-. ..-..|+|.+.
T Consensus 2 v~f~i~~~t~~Ge~l~v~-G~~~~LG~W~~~~a~~m~~---~~~~~~W~~~v~~~~~~~~~~~yKy~~~ 66 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVV-GSHPELGNWDPAKALRLNT---SNSYPLWTGEIPLPAPEGQVIEYKYVIV 66 (96)
T ss_pred EEEEEEEECCCCCEEEEE-eCcHHhCCcChhcCccccC---CCCCCcEEEEEEecCCCCCeEEEEEEEE
Confidence 566665433 3466665 5543222223345677753 33 68999887522 22356777764
No 109
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=26.55 E-value=67 Score=33.77 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEecc
Q 005552 289 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 319 (691)
Q Consensus 289 ~~~p~vr~~iid~l~yWl~eygVDGFRfD~~ 319 (691)
..++..|+-+++++.-+++++++||+-+|--
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E 113 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFE 113 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecC
Confidence 4678899999999999999999999999853
No 110
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=25.84 E-value=68 Score=34.65 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEec
Q 005552 290 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 318 (691)
Q Consensus 290 ~~p~vr~~iid~l~yWl~eygVDGFRfD~ 318 (691)
.++..|+-+++++.-|+++|++||+-+|-
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDw 120 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDW 120 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence 46788999999999999999999999983
No 111
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=25.72 E-value=1.1e+02 Score=36.48 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=17.1
Q ss_pred CCCceEEEeecCCCCchhhhh
Q 005552 434 KPWNSINFVCAHDGFSLADLV 454 (691)
Q Consensus 434 ~p~~~vnyl~nHD~~rl~d~~ 454 (691)
.+.++|.|+..||+.|+....
T Consensus 538 y~~~sva~t~THD~pTl~Gww 558 (695)
T PRK11052 538 YPEQSMATLTTHDLPTLRGYW 558 (695)
T ss_pred CcCCeEEECCCCCChhHHHHH
Confidence 356889999999999987654
No 112
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=25.63 E-value=98 Score=31.52 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEec
Q 005552 289 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 318 (691)
Q Consensus 289 ~~~p~vr~~iid~l~yWl~eygVDGFRfD~ 318 (691)
..+++-|+-+++++.-+++.||+||+=+|-
T Consensus 83 ~~~~~~~~~fa~~l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 83 NLSDAAAKAYAKAIVDTVDKYGLDGVDFDD 112 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 356677788888888899999999999984
No 113
>PRK10426 alpha-glucosidase; Provisional
Probab=25.56 E-value=82 Score=37.01 Aligned_cols=39 Identities=8% Similarity=0.269 Sum_probs=33.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhccccEEEEeccccccc
Q 005552 286 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 324 (691)
Q Consensus 286 dln~~~p~vr~~iid~l~yWl~eygVDGFRfD~~~~i~~ 324 (691)
-+|+.||++|+...+.++..+.++|||||=.|.-..++.
T Consensus 329 ~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~ 367 (635)
T PRK10426 329 VVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPT 367 (635)
T ss_pred eecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCC
Confidence 589999999999999988777799999999997765543
No 114
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=25.38 E-value=77 Score=34.37 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccEEEEec
Q 005552 289 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 318 (691)
Q Consensus 289 ~~~p~vr~~iid~l~yWl~eygVDGFRfD~ 318 (691)
..++..|+-+++++.-++++||.||+-+|-
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdIDw 120 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINIDI 120 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEcc
Confidence 568999999999999999999999999984
No 115
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=24.33 E-value=27 Score=40.73 Aligned_cols=103 Identities=22% Similarity=0.115 Sum_probs=70.6
Q ss_pred ccccccccceeecc-cccccccccCCCCCCCCeEEeCCcEEEEEEcCCCCeEEEEeeeCCCc----cC-CceeeEeeccc
Q 005552 69 ASKSAELETAVIKK-PQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDL----QE-NKVTEEIALDS 142 (691)
Q Consensus 69 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~lGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~----~~-~~~~~~~~m~~ 142 (691)
+.+..+..+.+|++ ++.+.+.+..+...+.+.....+++.|-..+-...++.++.|+.-.. +. -......|+.+
T Consensus 46 e~~~~~~p~~~ve~~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~~ewaP~a~ 125 (757)
T KOG0470|consen 46 EAKSGDLPADVVEKFYEIDPFLVPFALFLRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDFTEWAPLAE 125 (757)
T ss_pred hhhcCCCChHHhhcccccccccccccccchhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceeeeeeccccc
Confidence 33344334567777 79999999888888888877778888888877777777776432110 00 12234556665
Q ss_pred ccCCCCCe--EEEEEcCCC-CCceEEEEEcCc
Q 005552 143 FANKTGDV--WHVFLKGDF-KDMLYGYKFDGK 171 (691)
Q Consensus 143 ~~~~~~gv--W~~~v~g~~-~g~~Y~y~i~g~ 171 (691)
.....++. |..+..... ....|.|+|+++
T Consensus 126 ~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 126 AVSLIGDFNNWNPSSNELKPKDDLGVWEIDLP 157 (757)
T ss_pred ccccccccCCCCCcccccCcccccceeEEecC
Confidence 55556666 999887754 888899999976
No 116
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=22.90 E-value=92 Score=32.00 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHhccccEEEEec
Q 005552 290 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 318 (691)
Q Consensus 290 ~~p~vr~~iid~l~yWl~eygVDGFRfD~ 318 (691)
.+++-|+-+++++.-++++|++||+=||-
T Consensus 92 ~~~~~r~~f~~s~~~~~~~~~~DGiDiDw 120 (256)
T cd06546 92 DDDEDFERYYGQLRDMIRRRGLDGLDLDV 120 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 45666777778888899999999999984
No 117
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=21.65 E-value=91 Score=33.58 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHHHhccccEEEEecc
Q 005552 291 HPVVRQFIVDCLRYWVTEMHVDGFRFDLA 319 (691)
Q Consensus 291 ~p~vr~~iid~l~yWl~eygVDGFRfD~~ 319 (691)
++..|+-+++++.-++++|++||+-+|--
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE 116 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWE 116 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeeccc
Confidence 68889999999999999999999999843
No 118
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=21.62 E-value=2.9e+02 Score=24.13 Aligned_cols=87 Identities=13% Similarity=0.186 Sum_probs=38.4
Q ss_pred CcEEEEEEEccCCCEEEE-EEeCCC-CcEEEEcCCCCCC-ceEEEecCCCCCCCCCcCCCCchhHHHhhhcCCCCCCceE
Q 005552 597 SRFVAFTLIDSVKGEIYV-AFNASH-LPVIISLPKRPGY-RWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLY 673 (691)
Q Consensus 597 ~~vlaf~r~~~~~~~llV-v~N~~~-~~~~v~lp~~~g~-~w~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (691)
...+++.|...+++..+| .+|... ...+++|+....+ .|+..+-++...... .... ........+. ..+...+
T Consensus 14 GeyvviARr~~~G~~Wyvg~in~~~~r~i~l~L~FL~~g~~y~a~i~~D~~~a~~-~~~~--~~~~~~~~v~-~~~~l~i 89 (103)
T PF14509_consen 14 GEYVVIARRKRDGDDWYVGGINGEDARTITLPLSFLDKGKKYTATIYTDGPDADY-TNPE--AYKIETRKVT-SGDKLTI 89 (103)
T ss_dssp TTEEEEEEEETTTTEEEEEEEE-TT-EEEEEEGCCS-TT--EEEEEEEE-TTTCT-TCTT---EEEEEEEE--TT-EEEE
T ss_pred ceEEEEEEEcCCCCCEEEEEeeCCCceEEEEECcccCCCCcEEEEEEEeCCcccc-cCCc--ceEEEEEEEC-CCCEEEE
Confidence 356677776632245444 567664 3456666665544 577655444332110 0000 0000000011 1234678
Q ss_pred EeeCCeEEEEEecC
Q 005552 674 PMLSYSSIILLLSP 687 (691)
Q Consensus 674 ~l~p~s~~Vl~~~~ 687 (691)
+|.|....|+.-+|
T Consensus 90 ~l~~~GG~vi~~~p 103 (103)
T PF14509_consen 90 TLAPGGGFVIRITP 103 (103)
T ss_dssp EE-TT-EEEEEEEE
T ss_pred EEeCCCcEEEEEEC
Confidence 99999998887654
No 119
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=21.01 E-value=4e+02 Score=23.68 Aligned_cols=61 Identities=8% Similarity=0.158 Sum_probs=33.5
Q ss_pred EEEEE---EcCCCCeEEEEeeeCCCccCCceeeEeecccccC----CCCCeEEEEEcCCC----CCceEEEEE
Q 005552 107 VNFSI---FSSNAVSATLCLITLSDLQENKVTEEIALDSFAN----KTGDVWHVFLKGDF----KDMLYGYKF 168 (691)
Q Consensus 107 ~~F~v---wAP~A~~V~L~l~~~~~~~~~~~~~~~~m~~~~~----~~~gvW~~~v~g~~----~g~~Y~y~i 168 (691)
++|.| +.+.-++|.|+ ++-.....+.+...++|.+... .....|++.+.-.. ....|+|..
T Consensus 3 ~~f~~~~~~~~~gq~v~Iv-GsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 3 FRFGVVLTFADRDTELLVL-GSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred EEEEEEEeecCCCCEEEEE-ECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 56776 45666788776 6533222233445677764211 13457998885221 235677654
No 120
>PLN02229 alpha-galactosidase
Probab=20.28 E-value=2.2e+02 Score=31.66 Aligned_cols=74 Identities=9% Similarity=0.007 Sum_probs=42.8
Q ss_pred cEEEEEEEccCCCEEEEEEeCCCCcEEEEcCCC----CCC-ceEEEecCCCCCCCCCcCCC-CchhHHHhhhcCCCCCCc
Q 005552 598 RFVAFTLIDSVKGEIYVAFNASHLPVIISLPKR----PGY-RWEPLVDTSKPEPFDFLSSD-LPAKEIAIKQYAPFLDAN 671 (691)
Q Consensus 598 ~vlaf~r~~~~~~~llVv~N~~~~~~~v~lp~~----~g~-~w~~l~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 671 (691)
..-+|.+....+..+++++|.+.++++++++.. .+. .|++ .|..... +.. ......
T Consensus 342 ~~~vW~~~L~~g~~aValfN~~~~~~~v~v~~~~lGl~~~~~~~V---------rDLW~~~dlg~---------~~~~~~ 403 (427)
T PLN02229 342 CQQVWAGPLSGDRLVVALWNRCSEPATITASWDVIGLESSISVSV---------RDLWKHKDLSE---------NVVGSF 403 (427)
T ss_pred ceEEEEEECCCCCEEEEEEeCCCCCEEEEEEHHHcCCCCCCceEE---------EECCCCCccCc---------cccceE
Confidence 466777765544568888999998888776532 111 1211 1111111 000 002235
Q ss_pred eEEeeCCeEEEEEecCCC
Q 005552 672 LYPMLSYSSIILLLSPDE 689 (691)
Q Consensus 672 ~~~l~p~s~~Vl~~~~~~ 689 (691)
+.+|+|.++++|+.+|..
T Consensus 404 ~~~v~~Hg~~l~rl~~~~ 421 (427)
T PLN02229 404 GAQVDAHDCHMYIFTPQT 421 (427)
T ss_pred EEEECCCeEEEEEEeccc
Confidence 678999999999988754
Done!