BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005553
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 395 VSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMY 435
++V+GP+G S ++ +++V G G+TPF S+++ + Y
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWY 41
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 327 APGLSYNP---TSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQV 383
P +++ P TS+ I+VP++ Q ++++ N ++SV +G G
Sbjct: 180 GPVVNFEPGQYTSVA-IDVPALGLQQIRQYSLSDMPNGRSYRISVKREGGGPQPPGYVSN 238
Query: 384 LSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCK 443
L V + PYG +V++SGG G+TP +S+++ + A
Sbjct: 239 LLHDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQAPPR---- 294
Query: 444 TPQVILICSFKNSSDLTMLDLLLPISGT 471
QV+ + +NS+ M D L + T
Sbjct: 295 --QVVFVHGARNSAVHAMRDRLREAAKT 320
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 327 APGLSYNP---TSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQV 383
P +++ P TS+ I+VP++ Q ++++ N ++SV +G G
Sbjct: 180 GPVVNFEPGQYTSVA-IDVPALGLQQIRQYSLSDMPNGRTYRISVKREGGGPQPPGYVSN 238
Query: 384 LSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCK 443
L V + PYG +V++SGG G+TP +S+++ + A
Sbjct: 239 LLHDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQAPPR---- 294
Query: 444 TPQVILICSFKNSSDLTMLDLLLPISGT 471
QV+ + +NS+ M D L + T
Sbjct: 295 --QVVFVHGARNSAVHAMRDRLREAAKT 320
>pdb|3FPK|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Salmonella Typhimurium
pdb|3FPK|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Salmonella Typhimurium
Length = 251
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 412 DTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGT 471
+TL M++ G+ I P++S+ L Y V + K ++L+ + + ++DL+ L L+L +
Sbjct: 110 ETLWMLATGTAIGPYLSI---LQYGQDVARFKN--LVLVHAARFAADLSYLPLMLELQ-- 162
Query: 472 PTELPNLKLQIEAYVTREKQP 492
+ KL+I+ V+RE P
Sbjct: 163 --QRYEGKLRIQTVVSRENVP 181
>pdb|2NNA|B Chain B, Structure Of The Mhc Class Ii Molecule Hla-Dq8 Bound With
A Deamidated Gluten Peptide
Length = 207
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 586 LWNKKQNAKEATQIQHMEGSTPAGSPNSWFYNADRELESLPRQSLIQATIVHYGKRPELK 645
++N+++ A+ + + TP G P + ++N+ +E+ R L T+ + + EL+
Sbjct: 46 IYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAEL--DTVCRHNYQLELR 103
Query: 646 RMLFECKESSVGVLVSGPKRMRHEVATICS 675
L E +V + S + + H +CS
Sbjct: 104 TTLQRRVEPTVTISPSRTEALNHHNLLVCS 133
>pdb|1JK8|B Chain B, Crystal Structure Of A Human Insulin Peptide-Hla-Dq8
Complex
Length = 190
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 586 LWNKKQNAKEATQIQHMEGSTPAGSPNSWFYNADRELESLPRQSLIQATIVHYGKRPELK 645
++N+++ A+ + + TP G P + ++N+ +E+ R L T+ + + EL+
Sbjct: 29 IYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAEL--DTVCRHNYQLELR 86
Query: 646 RMLFECKESSVGVLVSGPKRMRHEVATICS 675
L E +V + S + + H +CS
Sbjct: 87 TTLQRRVEPTVTISPSRTEALNHHNLLVCS 116
>pdb|4GG6|B Chain B, Protein Complex
pdb|4GG6|D Chain D, Protein Complex
Length = 215
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 586 LWNKKQNAKEATQIQHMEGSTPAGSPNSWFYNADRELESLPRQSLIQATIVHYGKRPELK 645
++N+++ A+ + + TP G P + ++N+ +E+ R L T+ + + EL+
Sbjct: 46 IYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAEL--DTVCRHNYQLELR 103
Query: 646 RMLFECKESSVGVLVSGPKRMRHEVATICS 675
L E +V + S + + H +CS
Sbjct: 104 TTLQRRVEPTVTISPSRTEALNHHNLLVCS 133
>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC6|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
Length = 314
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 402 GPVSTHFLRHDT-----LVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNS 456
GP FL +T ++ ++ G+GI PFI + EL+ + T + L+ S
Sbjct: 151 GPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLIK--FTGNITLVYGAPYS 208
Query: 457 SDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKL 499
+L M+D L G ++ N KL I A ++RE++ + D ++
Sbjct: 209 DELVMMDYL---KGLESKHKNFKL-ITA-ISREEKNSFDGGRM 246
>pdb|1NDH|A Chain A, Crystal Structure Of Nadh-Cytochrome B5 Reductase From Pig
Liver At 2.4 Angstroms Resolution
Length = 272
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 416 MVSGGSGITPFISVIRELMYASTVTKCKTPQVILICS--FKNSSDLTML 462
M++GG+GITP + VIR +M K P +C F N ++ +L
Sbjct: 148 MIAGGTGITPMLQVIRAIM--------KDPDDHTVCHLLFANQTEKDIL 188
>pdb|1UMK|A Chain A, The Structure Of Human Erythrocyte Nadh-Cytochrome B5
Reductase
Length = 275
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 416 MVSGGSGITPFISVIRELMYASTVTKCKTPQVILICS--FKNSSDLTML 462
M++GG+GITP + VIR +M K P +C F N ++ +L
Sbjct: 151 MIAGGTGITPMLQVIRAIM--------KDPDDHTVCHLLFANQTEKDIL 191
>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
pdb|2EIX|B Chain B, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
Length = 243
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 350 WHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSSPSSIDRLD----VSVEGPYGPVS 405
+ P+T SS + E ++IK +Y+ ID L+ + V GP G
Sbjct: 60 YRPYTPVSSDD-EKGYFDLIIK--------VYEKGQMSQYIDHLNPGDFLQVRGPKGQFD 110
Query: 406 THFLRHDTLVMVSGGSGITPFISVIRELM 434
+ M++GG+GITP + V R ++
Sbjct: 111 YKPNMVKEMGMIAGGTGITPMLQVARAII 139
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 442 CKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIR 501
C+ + SFKN +LD ++ PTE+P +K T E + D+++
Sbjct: 262 CEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFS 321
Query: 502 ALWFKPLATD 511
+L FK +ATD
Sbjct: 322 SLAFK-IATD 330
>pdb|3BFJ|A Chain A, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|B Chain B, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|C Chain C, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|D Chain D, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|E Chain E, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|F Chain F, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|G Chain G, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|H Chain H, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|I Chain I, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|J Chain J, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|K Chain K, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|L Chain L, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|M Chain M, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|N Chain N, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|O Chain O, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|P Chain P, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|Q Chain Q, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|R Chain R, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|S Chain S, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|T Chain T, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
Length = 387
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 428 SVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTP------TELPNLKLQ 481
V R + +T TK K +I S++N +++ D LL I G P T + L
Sbjct: 149 EVTRHCVLTNTETKVK----FVIVSWRNLPSVSINDPLLMI-GKPAALTAATGMDALTHA 203
Query: 482 IEAYVTREKQPTTDNSKL 499
+EAY++++ P TD + +
Sbjct: 204 VEAYISKDANPVTDAAAM 221
>pdb|1UVQ|B Chain B, Crystal Structure Of Hla-Dq0602 In Complex With A
Hypocretin Peptide
Length = 198
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 586 LWNKKQNAKEATQIQHMEGSTPAGSPNSWFYNADRELESLPRQSLIQATIVHYGKRPELK 645
++N+++ A+ + + TP G P++ ++N+ +E+ R L T+ + +
Sbjct: 29 IYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAEL--DTVCRHNYEVAFR 86
Query: 646 RMLFECKESSVGVLVSGPKRMRHEVATICS 675
+L E +V + S + + H +CS
Sbjct: 87 GILQRRVEPTVTISPSRTEALNHHNLLVCS 116
>pdb|1IAO|B Chain B, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
Length = 222
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 586 LWNKKQNAKEATQIQHMEGSTPAGSPNSWFYNADRELESLPRQSLIQATIVHYGKRPELK 645
++N+++ + + + T G P++ ++N+ E+ R + A +Y + PE
Sbjct: 56 IYNREEYVRYDSDVGEYRAVTELGRPDAEYWNSQPEILDRTRAEVDTACRHNY-EGPETS 114
Query: 646 RMLFECKESSVGVLVSGPKRMRHEVATICS 675
L ++ +V + +S + + H +CS
Sbjct: 115 TSLRRLEQPNVAISLSRTEALNHHNTLVCS 144
>pdb|2XNJ|A Chain A, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
pdb|2XNJ|B Chain B, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
Length = 266
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 339 FINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSSPSSIDRLDVSVE 398
++N P L+++ TV +++ V+KG KL L++ D + V E
Sbjct: 64 YVNSPDNPDLEFYLVTVVYTNDA-----GEVVKG------KLSPRLAALKPGDEVQVVSE 112
Query: 399 GPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSD 458
V +TL M++ G+ I P++S++R + + K ++L+ + + ++D
Sbjct: 113 AAGFFVLDEVPHCETLWMLATGTAIGPYLSILR---LGKDLDRFKN--LVLVHAARYAAD 167
Query: 459 LTMLDLLLPISGTPTELPNLKLQIEAYVTRE 489
L+ L L+ + + KL+I+ V+RE
Sbjct: 168 LSYLPLMQELE----KRYEGKLRIQTVVSRE 194
>pdb|2IAD|B Chain B, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 205
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 586 LWNKKQNAKEATQIQHMEGSTPAGSPNSWFYNADRELESLPRQSLIQATIVHYGKRPELK 645
++N+++ + + + T G P++ ++N+ E+ R + A +Y + PE
Sbjct: 45 IYNREEYVRYDSDVGEYRAVTELGRPDAEYWNSQPEILERTRAEVDTACRHNY-EGPETS 103
Query: 646 RMLFECKESSVGVLVSGPKRMRHEVATICS 675
L ++ +V + +S + + H +CS
Sbjct: 104 TSLRRLEQPNVAISLSRTEALNHHNTLVCS 133
>pdb|4F7D|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264
pdb|4F7D|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264
pdb|4FK8|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264 With Bound Fad
pdb|4FK8|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264 With Bound Fad
Length = 271
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 404 VSTHFLRHDTLVMVSGGSGITPFISVIRE 432
V+ + L TL M+S G+G+ PF+S+IR+
Sbjct: 115 VADNLLPGKTLWMLSTGTGLAPFMSIIRD 143
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 402 GPVSTHFLRH--DTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDL 459
GP + +LR ++M++GG+GI PF+S+++ L K V L+ DL
Sbjct: 199 GPFGSFYLRDVKRPVLMLAGGTGIAPFLSMLQVLE-----QKGSEHPVRLVFGVTQDCDL 253
Query: 460 TMLDLL 465
L+ L
Sbjct: 254 VALEQL 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,326,465
Number of Sequences: 62578
Number of extensions: 756042
Number of successful extensions: 1432
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1424
Number of HSP's gapped (non-prelim): 25
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)