Query 005553
Match_columns 691
No_of_seqs 479 out of 2486
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 01:17:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02631 ferric-chelate reduct 100.0 7E-152 1E-156 1295.9 62.5 680 1-691 13-699 (699)
2 PLN02292 ferric-chelate reduct 100.0 2E-148 5E-153 1269.4 58.9 676 1-691 20-702 (702)
3 PLN02844 oxidoreductase/ferric 100.0 1E-130 3E-135 1125.8 60.1 666 1-691 15-722 (722)
4 KOG0039 Ferric reductase, NADH 100.0 1.3E-67 2.9E-72 607.3 41.0 572 3-689 47-646 (646)
5 COG4097 Predicted ferric reduc 100.0 2.3E-36 4.9E-41 312.2 27.5 312 147-484 38-378 (438)
6 cd06186 NOX_Duox_like_FAD_NADP 100.0 8.5E-30 1.9E-34 256.7 21.9 173 310-488 2-178 (210)
7 cd06216 FNR_iron_sulfur_bindin 99.9 2.4E-24 5.1E-29 222.2 19.0 211 294-524 2-222 (243)
8 cd06189 flavin_oxioreductase N 99.9 2E-24 4.4E-29 220.0 17.6 197 308-524 2-202 (224)
9 cd06215 FNR_iron_sulfur_bindin 99.9 5.8E-24 1.2E-28 217.3 18.9 200 308-524 2-209 (231)
10 PRK08051 fre FMN reductase; Va 99.9 1.3E-23 2.8E-28 215.4 19.1 200 305-524 3-206 (232)
11 cd06209 BenDO_FAD_NAD Benzoate 99.9 8.8E-24 1.9E-28 215.8 17.8 199 306-524 3-205 (228)
12 cd06210 MMO_FAD_NAD_binding Me 99.9 9.4E-24 2E-28 216.6 17.5 201 306-524 3-213 (236)
13 cd06217 FNR_iron_sulfur_bindin 99.9 1.4E-23 3E-28 215.0 18.6 203 305-524 2-213 (235)
14 cd06187 O2ase_reductase_like T 99.9 8.5E-24 1.8E-28 215.0 16.8 197 310-524 2-202 (224)
15 cd06184 flavohem_like_fad_nad_ 99.9 3.6E-23 7.7E-28 213.9 20.6 205 303-524 5-221 (247)
16 cd06190 T4MO_e_transfer_like T 99.9 1.3E-23 2.7E-28 215.1 16.6 199 310-524 2-208 (232)
17 cd06194 FNR_N-term_Iron_sulfur 99.9 3.2E-23 6.9E-28 210.7 18.4 193 310-524 2-199 (222)
18 cd06191 FNR_iron_sulfur_bindin 99.9 2.7E-23 5.7E-28 212.7 17.8 199 308-524 2-209 (231)
19 cd06198 FNR_like_3 NAD(P) bind 99.9 3.7E-23 8E-28 209.4 18.6 186 317-524 7-193 (216)
20 cd06213 oxygenase_e_transfer_s 99.9 3.6E-23 7.8E-28 211.2 18.6 199 306-524 2-205 (227)
21 cd06211 phenol_2-monooxygenase 99.9 3.4E-23 7.3E-28 213.0 18.5 202 305-524 7-216 (238)
22 cd06197 FNR_like_2 FAD/NAD(P) 99.9 6.5E-23 1.4E-27 208.6 19.8 147 312-467 3-177 (220)
23 cd06212 monooxygenase_like The 99.9 5.3E-23 1.1E-27 210.6 18.9 200 306-524 2-209 (232)
24 cd00322 FNR_like Ferredoxin re 99.9 5.9E-23 1.3E-27 208.0 18.5 196 312-524 3-203 (223)
25 cd06195 FNR1 Ferredoxin-NADP+ 99.9 5.2E-23 1.1E-27 211.9 18.0 199 309-524 2-213 (241)
26 PRK08345 cytochrome-c3 hydroge 99.9 1.3E-22 2.8E-27 214.8 21.1 169 305-492 6-180 (289)
27 PRK11872 antC anthranilate dio 99.9 1.1E-22 2.4E-27 220.0 18.6 201 305-524 107-313 (340)
28 PRK07609 CDP-6-deoxy-delta-3,4 99.9 9E-23 2E-27 220.8 17.8 200 305-524 103-310 (339)
29 cd06196 FNR_like_1 Ferredoxin 99.9 1.5E-22 3.3E-27 205.2 18.0 193 306-524 2-198 (218)
30 cd06221 sulfite_reductase_like 99.9 2.9E-22 6.3E-27 208.1 19.5 194 310-524 2-202 (253)
31 PRK10684 HCP oxidoreductase, N 99.9 3.9E-22 8.4E-27 215.2 18.9 202 305-524 10-215 (332)
32 cd06188 NADH_quinone_reductase 99.9 2.4E-22 5.3E-27 212.1 15.8 203 305-524 10-261 (283)
33 cd06183 cyt_b5_reduct_like Cyt 99.9 5E-22 1.1E-26 203.1 17.6 202 308-524 2-213 (234)
34 cd06214 PA_degradation_oxidore 99.9 1.3E-21 2.9E-26 201.2 20.4 203 306-524 3-218 (241)
35 PRK10926 ferredoxin-NADP reduc 99.9 1.3E-21 2.9E-26 202.6 19.6 203 304-524 4-218 (248)
36 PRK13289 bifunctional nitric o 99.9 1.5E-21 3.3E-26 215.8 20.6 204 304-524 154-370 (399)
37 PRK00054 dihydroorotate dehydr 99.9 3.1E-21 6.6E-26 200.1 19.6 147 305-467 5-151 (250)
38 cd06185 PDR_like Phthalate dio 99.9 8.8E-21 1.9E-25 191.2 22.4 141 311-468 2-148 (211)
39 cd06192 DHOD_e_trans_like FAD/ 99.9 3.6E-21 7.8E-26 198.6 19.1 144 310-467 2-146 (243)
40 KOG0534 NADH-cytochrome b-5 re 99.9 3.7E-21 8E-26 199.1 19.0 207 304-525 51-266 (286)
41 cd06218 DHOD_e_trans FAD/NAD b 99.9 2.1E-21 4.5E-26 200.9 16.6 145 310-468 2-148 (246)
42 PRK06222 ferredoxin-NADP(+) re 99.9 5.1E-21 1.1E-25 201.7 19.6 145 307-468 2-148 (281)
43 cd06219 DHOD_e_trans_like1 FAD 99.9 5.6E-21 1.2E-25 197.9 18.9 144 308-468 2-147 (248)
44 PF08030 NAD_binding_6: Ferric 99.9 2.7E-22 6E-27 192.5 7.6 80 411-492 1-80 (156)
45 PTZ00274 cytochrome b5 reducta 99.9 1.2E-20 2.6E-25 202.0 20.3 210 304-524 52-275 (325)
46 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 8.9E-21 1.9E-25 206.3 18.9 203 305-523 2-218 (352)
47 PTZ00319 NADH-cytochrome B5 re 99.9 2.1E-20 4.6E-25 198.7 19.7 203 305-524 34-279 (300)
48 PRK05713 hypothetical protein; 99.9 8E-21 1.7E-25 203.3 16.5 191 305-524 92-286 (312)
49 PLN03116 ferredoxin--NADP+ red 99.9 3.6E-20 7.8E-25 197.7 20.9 210 305-524 25-271 (307)
50 COG1018 Hmp Flavodoxin reducta 99.8 5.1E-20 1.1E-24 191.6 21.2 167 304-487 5-175 (266)
51 cd06208 CYPOR_like_FNR These f 99.8 3.2E-20 7E-25 196.2 19.5 210 305-524 9-251 (286)
52 PRK08221 anaerobic sulfite red 99.8 3.2E-20 7E-25 193.8 19.0 192 306-524 9-204 (263)
53 TIGR02911 sulfite_red_B sulfit 99.8 3.5E-20 7.6E-25 193.3 19.1 193 306-524 7-202 (261)
54 PRK05464 Na(+)-translocating N 99.8 4.8E-20 1E-24 204.4 17.9 202 306-524 135-385 (409)
55 PRK05802 hypothetical protein; 99.8 1.1E-19 2.5E-24 194.4 20.2 150 305-468 65-222 (320)
56 cd06220 DHOD_e_trans_like2 FAD 99.8 9.7E-20 2.1E-24 186.9 18.4 135 308-467 2-136 (233)
57 PLN02252 nitrate reductase [NA 99.8 9E-20 2E-24 216.7 19.9 207 304-525 634-868 (888)
58 TIGR01941 nqrF NADH:ubiquinone 99.8 1.2E-19 2.6E-24 200.9 17.2 201 306-524 131-381 (405)
59 cd06182 CYPOR_like NADPH cytoc 99.8 2.6E-19 5.6E-24 187.4 18.8 194 316-525 14-228 (267)
60 COG0543 UbiB 2-polyprenylpheno 99.8 6E-19 1.3E-23 183.0 19.8 192 307-524 10-204 (252)
61 PLN03115 ferredoxin--NADP(+) r 99.8 3.1E-19 6.6E-24 193.4 18.2 206 308-523 94-330 (367)
62 cd06200 SiR_like1 Cytochrome p 99.8 3.4E-19 7.4E-24 184.3 16.6 152 318-490 17-178 (245)
63 PF08022 FAD_binding_8: FAD-bi 99.8 3.5E-21 7.7E-26 172.9 -1.9 97 306-404 3-104 (105)
64 TIGR03224 benzo_boxA benzoyl-C 99.8 4.4E-18 9.6E-23 188.2 20.5 203 305-524 143-375 (411)
65 cd06201 SiR_like2 Cytochrome p 99.8 4.3E-18 9.4E-23 180.2 18.7 193 304-524 45-257 (289)
66 PRK12778 putative bifunctional 99.8 9.1E-18 2E-22 199.8 19.2 145 307-468 2-148 (752)
67 PF01794 Ferric_reduct: Ferric 99.7 2.1E-17 4.5E-22 152.4 12.8 119 153-271 1-122 (125)
68 PRK12775 putative trifunctiona 99.7 1E-16 2.2E-21 194.6 19.4 145 307-467 2-148 (1006)
69 cd06193 siderophore_interactin 99.7 1.1E-16 2.4E-21 164.5 15.9 184 310-524 2-210 (235)
70 PTZ00306 NADH-dependent fumara 99.7 1.3E-16 2.9E-21 196.9 19.5 208 304-524 914-1141(1167)
71 PRK12779 putative bifunctional 99.7 2.4E-16 5.2E-21 189.9 16.7 145 305-465 649-797 (944)
72 cd06199 SiR Cytochrome p450- l 99.4 1.6E-13 3.5E-18 149.7 9.3 143 330-491 130-284 (360)
73 cd06206 bifunctional_CYPOR The 99.4 3E-13 6.5E-18 149.0 11.1 175 332-523 147-339 (384)
74 cd06207 CyPoR_like NADPH cytoc 99.4 8.8E-13 1.9E-17 145.2 12.0 133 347-491 161-305 (382)
75 TIGR01931 cysJ sulfite reducta 99.4 3.8E-13 8.2E-18 155.6 8.8 141 330-489 367-519 (597)
76 cd06203 methionine_synthase_re 99.3 1E-11 2.2E-16 137.4 14.8 166 347-522 171-355 (398)
77 PRK06214 sulfite reductase; Pr 99.3 2.1E-11 4.5E-16 138.2 14.7 130 347-490 313-453 (530)
78 PF00970 FAD_binding_6: Oxidor 99.3 1.7E-11 3.6E-16 108.6 10.7 91 307-404 2-97 (99)
79 cd06204 CYPOR NADPH cytochrome 99.2 4.7E-11 1E-15 132.8 13.3 134 347-491 175-340 (416)
80 COG2871 NqrF Na+-transporting 99.2 2.9E-11 6.3E-16 122.2 9.9 184 321-522 151-384 (410)
81 cd06202 Nitric_oxide_synthase 99.2 5.5E-11 1.2E-15 131.9 11.9 164 347-523 174-361 (406)
82 PRK06567 putative bifunctional 99.2 2.1E-10 4.5E-15 135.8 17.0 119 306-435 792-914 (1028)
83 PRK10953 cysJ sulfite reductas 99.2 8.8E-11 1.9E-15 135.6 10.5 142 330-490 370-523 (600)
84 PF00175 NAD_binding_1: Oxidor 98.8 1.9E-09 4.1E-14 96.7 1.7 100 416-524 1-104 (109)
85 PRK05419 putative sulfite oxid 98.6 1.5E-06 3.3E-11 87.3 17.0 123 147-277 41-164 (205)
86 KOG3378 Globins and related he 98.6 3.2E-07 7E-12 92.7 11.7 127 304-437 149-288 (385)
87 COG0369 CysJ Sulfite reductase 98.2 7E-06 1.5E-10 94.3 11.6 130 348-492 371-512 (587)
88 KOG1158 NADP/FAD dependent oxi 97.9 3.9E-05 8.5E-10 88.3 10.8 136 347-491 419-567 (645)
89 COG2717 Predicted membrane pro 97.8 0.0009 1.9E-08 66.7 16.2 147 148-301 42-194 (209)
90 KOG1159 NADP-dependent flavopr 96.4 0.019 4.1E-07 63.4 10.3 108 341-465 362-481 (574)
91 COG2375 ViuB Siderophore-inter 96.3 0.13 2.8E-06 53.5 15.3 139 305-458 18-182 (265)
92 PF08021 FAD_binding_9: Sidero 95.6 0.095 2.1E-06 48.0 9.7 91 308-404 1-117 (117)
93 cd06184 flavohem_like_fad_nad_ 87.9 0.71 1.5E-05 47.5 4.9 50 640-689 194-245 (247)
94 cd06195 FNR1 Ferredoxin-NADP+ 86.0 0.67 1.4E-05 47.5 3.5 33 654-686 200-240 (241)
95 cd06197 FNR_like_2 FAD/NAD(P) 85.9 0.57 1.2E-05 47.6 2.8 27 657-686 192-218 (220)
96 PRK08051 fre FMN reductase; Va 82.9 0.78 1.7E-05 46.9 2.3 32 658-689 197-231 (232)
97 cd06209 BenDO_FAD_NAD Benzoate 81.1 2 4.3E-05 43.6 4.5 48 640-687 176-227 (228)
98 cd06217 FNR_iron_sulfur_bindin 80.7 1.1 2.5E-05 45.4 2.6 31 656-686 202-234 (235)
99 cd06212 monooxygenase_like The 79.2 2.2 4.7E-05 43.4 4.1 32 656-687 198-231 (232)
100 cd06215 FNR_iron_sulfur_bindin 78.6 2.1 4.5E-05 43.4 3.7 33 654-686 196-230 (231)
101 PF00175 NAD_binding_1: Oxidor 76.7 1.8 3.8E-05 38.2 2.3 21 652-672 89-109 (109)
102 cd06216 FNR_iron_sulfur_bindin 75.7 4 8.7E-05 41.8 4.9 32 655-686 210-242 (243)
103 cd06189 flavin_oxioreductase N 75.5 2.7 5.9E-05 42.5 3.5 32 655-686 190-223 (224)
104 COG4097 Predicted ferric reduc 75.3 1.2 2.7E-05 48.2 0.9 33 657-689 403-437 (438)
105 cd06188 NADH_quinone_reductase 74.1 2.4 5.2E-05 44.7 2.8 33 654-686 248-282 (283)
106 cd06196 FNR_like_1 Ferredoxin 73.9 2.1 4.6E-05 43.0 2.3 29 657-685 188-218 (218)
107 cd06191 FNR_iron_sulfur_bindin 73.8 2.3 4.9E-05 43.3 2.4 31 656-686 198-230 (231)
108 PRK07609 CDP-6-deoxy-delta-3,4 72.7 2.8 6.1E-05 45.4 3.0 34 656-689 299-334 (339)
109 cd06190 T4MO_e_transfer_like T 72.3 2.6 5.6E-05 42.8 2.4 34 654-687 195-231 (232)
110 cd06198 FNR_like_3 NAD(P) bind 72.1 2.4 5.2E-05 42.6 2.1 33 654-686 180-214 (216)
111 cd06187 O2ase_reductase_like T 70.5 4.7 0.0001 40.5 3.9 48 639-686 172-223 (224)
112 cd06213 oxygenase_e_transfer_s 70.0 4.6 0.0001 40.9 3.7 48 639-686 177-226 (227)
113 PRK13289 bifunctional nitric o 69.9 5 0.00011 44.4 4.3 34 655-688 358-393 (399)
114 PRK11872 antC anthranilate dio 68.3 4.3 9.3E-05 44.1 3.2 31 657-687 303-335 (340)
115 TIGR02160 PA_CoA_Oxy5 phenylac 68.1 4.1 8.9E-05 44.4 3.0 50 640-689 187-243 (352)
116 cd06218 DHOD_e_trans FAD/NAD b 68.0 7.4 0.00016 40.2 4.8 41 639-679 162-204 (246)
117 PRK10684 HCP oxidoreductase, N 67.7 4 8.6E-05 44.2 2.8 30 658-687 206-237 (332)
118 cd06210 MMO_FAD_NAD_binding Me 67.2 3.8 8.2E-05 41.7 2.4 31 657-687 203-235 (236)
119 cd06211 phenol_2-monooxygenase 66.6 5.5 0.00012 40.7 3.5 32 655-686 204-237 (238)
120 PRK05464 Na(+)-translocating N 66.3 4.3 9.4E-05 45.3 2.8 32 656-687 374-407 (409)
121 cd00322 FNR_like Ferredoxin re 65.9 3.5 7.6E-05 41.2 1.8 32 654-685 190-223 (223)
122 cd06220 DHOD_e_trans_like2 FAD 62.4 10 0.00022 38.7 4.5 45 642-686 153-199 (233)
123 TIGR01941 nqrF NADH:ubiquinone 59.7 6.7 0.00015 43.8 2.8 32 656-687 370-403 (405)
124 COG2717 Predicted membrane pro 59.1 1E+02 0.0022 31.2 10.6 58 143-206 109-166 (209)
125 cd06194 FNR_N-term_Iron_sulfur 57.6 7.9 0.00017 38.9 2.7 32 655-686 187-220 (222)
126 PRK08345 cytochrome-c3 hydroge 57.6 9.4 0.0002 40.5 3.4 29 656-684 213-243 (289)
127 cd06193 siderophore_interactin 56.3 9.5 0.00021 39.0 3.0 32 655-686 198-232 (235)
128 COG1018 Hmp Flavodoxin reducta 56.1 17 0.00036 38.3 4.8 51 637-688 178-231 (266)
129 cd06214 PA_degradation_oxidore 55.4 7.7 0.00017 39.5 2.2 34 653-686 204-239 (241)
130 PRK10926 ferredoxin-NADP reduc 50.2 11 0.00023 39.1 2.2 21 656-676 207-227 (248)
131 PRK06222 ferredoxin-NADP(+) re 49.7 16 0.00034 38.6 3.5 22 658-679 184-205 (281)
132 KOG0534 NADH-cytochrome b-5 re 49.5 17 0.00037 38.6 3.6 34 640-673 235-271 (286)
133 PRK05713 hypothetical protein; 49.5 11 0.00023 40.5 2.2 29 658-686 277-307 (312)
134 PF00033 Cytochrom_B_N: Cytoch 47.5 1.9E+02 0.0042 27.7 10.7 32 179-210 40-71 (188)
135 cd06208 CYPOR_like_FNR These f 46.2 18 0.0004 38.1 3.4 20 657-676 241-260 (286)
136 cd06221 sulfite_reductase_like 46.2 24 0.00051 36.6 4.1 25 655-679 190-214 (253)
137 cd08554 Cyt_b561 Eukaryotic cy 45.1 35 0.00076 31.4 4.7 22 182-203 105-126 (131)
138 cd06201 SiR_like2 Cytochrome p 43.9 15 0.00032 39.0 2.2 20 657-676 247-266 (289)
139 PRK00054 dihydroorotate dehydr 41.1 27 0.00059 36.0 3.6 38 641-678 167-204 (250)
140 cd06182 CYPOR_like NADPH cytoc 40.9 19 0.00042 37.7 2.5 20 657-676 216-236 (267)
141 PLN03116 ferredoxin--NADP+ red 40.2 18 0.0004 38.7 2.2 19 658-676 262-280 (307)
142 PF13706 PepSY_TM_3: PepSY-ass 40.1 36 0.00078 24.4 3.0 19 184-202 3-21 (37)
143 cd06183 cyt_b5_reduct_like Cyt 40.0 25 0.00055 35.4 3.1 25 654-678 200-225 (234)
144 PF14358 DUF4405: Domain of un 37.3 60 0.0013 26.0 4.3 31 176-206 32-62 (64)
145 COG0543 UbiB 2-polyprenylpheno 37.2 36 0.00078 35.4 3.8 41 638-678 173-215 (252)
146 PF03188 Cytochrom_B561: Eukar 37.1 56 0.0012 30.1 4.8 20 183-202 105-124 (137)
147 COG1294 AppB Cytochrome bd-typ 36.2 6.2E+02 0.013 27.8 16.5 80 138-218 113-196 (346)
148 PF13172 PepSY_TM_1: PepSY-ass 35.2 55 0.0012 22.8 3.3 22 183-204 3-24 (34)
149 PRK11281 hypothetical protein; 34.7 8.6E+02 0.019 31.1 15.6 40 167-206 598-637 (1113)
150 smart00665 B561 Cytochrome b-5 33.1 67 0.0015 29.5 4.5 20 183-202 104-123 (129)
151 PF03929 PepSY_TM: PepSY-assoc 32.7 70 0.0015 21.4 3.2 20 185-204 1-20 (27)
152 PF01292 Ni_hydr_CYTB: Prokary 32.7 2.9E+02 0.0062 26.4 9.2 23 185-207 42-64 (182)
153 cd08760 Cyt_b561_FRRS1_like Eu 32.6 2.7E+02 0.0059 27.3 9.1 26 183-208 135-160 (191)
154 cd06200 SiR_like1 Cytochrome p 32.4 32 0.00068 35.5 2.4 19 658-676 205-224 (245)
155 cd06192 DHOD_e_trans_like FAD/ 32.3 29 0.00064 35.4 2.2 21 657-677 180-200 (243)
156 PLN03115 ferredoxin--NADP(+) r 31.5 44 0.00095 36.9 3.5 22 655-676 319-340 (367)
157 cd06206 bifunctional_CYPOR The 31.1 34 0.00073 37.9 2.5 28 317-344 15-42 (384)
158 COG3354 FlaG Putative archaeal 30.8 1.2E+02 0.0027 28.7 5.7 49 362-424 68-116 (154)
159 cd06219 DHOD_e_trans_like1 FAD 28.9 42 0.00092 34.5 2.7 22 658-679 183-204 (248)
160 PF10067 DUF2306: Predicted me 28.9 1.2E+02 0.0026 26.9 5.3 23 184-206 4-26 (103)
161 PF00599 Flu_M2: Influenza Mat 28.8 14 0.0003 31.4 -0.7 44 641-688 45-95 (97)
162 TIGR02911 sulfite_red_B sulfit 28.7 40 0.00086 35.1 2.4 25 655-679 190-214 (261)
163 PF01794 Ferric_reduct: Ferric 27.9 1.1E+02 0.0024 27.3 4.9 45 233-277 2-52 (125)
164 PTZ00274 cytochrome b5 reducta 27.1 37 0.00079 36.8 1.9 17 657-673 265-281 (325)
165 TIGR03224 benzo_boxA benzoyl-C 26.0 44 0.00095 37.5 2.3 20 657-676 365-388 (411)
166 PRK05802 hypothetical protein; 25.9 43 0.00093 36.2 2.2 31 644-676 245-275 (320)
167 PRK12779 putative bifunctional 24.7 57 0.0012 40.7 3.2 23 658-680 850-872 (944)
168 PF00667 FAD_binding_1: FAD bi 23.8 73 0.0016 32.2 3.3 27 347-373 176-202 (219)
169 PF15201 Rod_cone_degen: Progr 23.4 14 0.00031 27.9 -1.5 29 576-604 4-32 (54)
170 KOG4126 Alkaline phosphatase [ 23.0 51 0.0011 37.5 2.0 33 633-665 442-490 (529)
171 cd06207 CyPoR_like NADPH cytoc 23.0 54 0.0012 36.3 2.3 28 317-344 15-43 (382)
172 PF11118 DUF2627: Protein of u 23.0 2.1E+02 0.0046 24.2 5.1 35 560-594 37-71 (77)
173 cd06204 CYPOR NADPH cytochrome 22.3 59 0.0013 36.5 2.4 37 308-344 9-50 (416)
174 PRK12778 putative bifunctional 21.7 79 0.0017 38.4 3.5 23 658-680 184-206 (752)
175 cd03497 SQR_TypeB_1_TM Succina 20.1 8.5E+02 0.018 24.5 10.0 37 187-223 8-45 (207)
No 1
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=6.6e-152 Score=1295.87 Aligned_cols=680 Identities=53% Similarity=0.989 Sum_probs=618.8
Q ss_pred CEehhhHhhHhhhccchhhhhhhhhhhhhccccceeeccccceehhhHHHHHHHHHHHHHHHHhhhhcCCCccccccCcc
Q 005553 1 MAVYLGTLMLWVLMPTNTYRQNWLPHLRAKFGFTTYFGAQGTTLLIYTFPILFIAVTGCLYLHLGNKLNDNNVLERNGKK 80 (691)
Q Consensus 1 ~~~~~~~~~~~~~~pt~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~y~~~vl~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (691)
+++|+||+++|+|+||++|+++|++++++++ +++|||.+|.++++|.+|++++|+++|+|+++.++.+.++. +++.+
T Consensus 13 ~~~f~~~~~~~~~~pt~~~~~~~~~~~~~~~-~~t~fg~~g~~~l~~~~p~~~~a~~~~~yl~~~~~~~~~~~-~~~~~- 89 (699)
T PLN02631 13 VVLFLGWIFVWIMISTNLFKSKWTPKLAKNL-NTTYFGPQGTNLVLLTVPMMFIAVLSCVYLHTQKKPTQPQR-EWKLK- 89 (699)
T ss_pred HHHHHHHHHHhheeCcHHHHhhhhHHHHhhh-cCceeccccchhhhhhhHHHHHHHHHHHheeeccccCcchh-hcccc-
Confidence 4689999999999999999999999998888 69999999999999999999999999999999977653311 11211
Q ss_pred cceeeeeeceEecCCCccchHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhHHhhhHHHHHHHhHHHHHH
Q 005553 81 HRLGIWKKPMLVKGPLGIVSGIELAFFMMLIALLIWSLSNYLHNSFADITPQSAAEEGVKVWQGKLESTALRFGLVGNIC 160 (691)
Q Consensus 81 ~~~~~~~~p~l~~~~~gi~t~~e~~~i~~~~~l~i~~~~~y~~~~~~~i~~~~~~~~~~~~~~~~~~~va~R~G~la~~~ 160 (691)
+ .|++|++|++|+|++|..|++++++|+++++|+++.|.+.+|+ +... + +...+.|+++++.+|+|+|++|.+|
T Consensus 90 -~--~~~~p~lv~~~~givs~~e~~~~~~f~~~~~w~~~~y~~~~~~-~~~~-~-~~~~~~~~~~l~~ig~RtGila~~~ 163 (699)
T PLN02631 90 -R--RMGRVIMVMNPLGIVTATELTFSLLFVALLAWSLYNYLYLSYH-VHLH-N-DDNAKIWQAKFRAFGLRIGYVGHIC 163 (699)
T ss_pred -c--cccCcEEeeCCceeeeHHHHHHHHHHHHHHHHHHHHHHHhhhe-eccC-C-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 1 3799999999999999999999999999999999999988885 3222 2 2335789999999999999999999
Q ss_pred HHHHHHhhcCcccchhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhhccchhhHHHHHHHH
Q 005553 161 LTLLFFPVARGSSVLPLFGLTSEASIKYHIWLGHMVMTLFTAHGVCYIIFWAVTNNISEMLQWAKIGISNVAGELALLSG 240 (691)
Q Consensus 161 l~~l~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~~~~~~w~~~~~~~~~G~ial~~l 240 (691)
||++++|++|||+++++|||+||++++||||+||++++++++|+++|+++|...+.+.+...|...++.+++|++|++++
T Consensus 164 lpll~L~a~Rnn~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~~~~~~w~~~~~~~~~GviA~v~~ 243 (699)
T PLN02631 164 WAFLFFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLMETFAWNPTYVPNLAGTIAMVIG 243 (699)
T ss_pred HHHHHHHHhccCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987777766667766666789999999999
Q ss_pred HHHHHhccchhhhchhhHHHHHHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccccceEEEEEEEEecCCEE
Q 005553 241 LAMWATTFPPIRRKFFELFFYTHYLYILFVVFFVFHVGISYSLIMLPSFYLFVVDRYLRFLQSRRAVRLVSARMLPGETV 320 (691)
Q Consensus 241 ~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~~~~~~~v~~~i~l~~~dR~lR~~~~~~~~~v~s~~~l~~~~~ 320 (691)
++|+++|++++||++||+|+++|++++++++++++|++..|.+|+++++++|++||++|++|+....++++++.+++|++
T Consensus 244 ~lm~~~Sl~~~RRr~YE~F~~~Hillaifiv~~~~H~g~~w~~~~~~~ialw~~DR~lR~~r~~~~~~lv~~~~l~~d~l 323 (699)
T PLN02631 244 IAMWVTSLPSFRRKKFELFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVSARILPSDNL 323 (699)
T ss_pred HHHHHhccHHHHhhhhhHHHHHHHHHHHHHHheEEecCCchHHHHHHHHHHHHHHHHHHHHHHhceEEEEEEEEeCCCeE
Confidence 99999999999999999999999999888889999998778888999999999999999999877788999999999999
Q ss_pred EEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhcCCCCCceeEEEEECC
Q 005553 321 ELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSSPSSIDRLDVSVEGP 400 (691)
Q Consensus 321 ~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~~g~~~~~~~v~VeGP 400 (691)
+++++++++++++||||+++++|..+++|+|||||+|+|+++++.++++||++|++|++|++.++++. +.+++.+|||
T Consensus 324 ~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~~g--~~i~V~VeGP 401 (699)
T PLN02631 324 ELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSSI--DSLEVSTEGP 401 (699)
T ss_pred EEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhcCC--CeeEEEEECC
Confidence 99999888899999999999999988999999999999865578999999999999999999886532 2578999999
Q ss_pred CCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCce
Q 005553 401 YGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKL 480 (691)
Q Consensus 401 YG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l 480 (691)
||++..+..+++++++||||+||||++|++++++++..+++.+.++++|+|++|+.+|+.+.|++.+....+.+.++.|+
T Consensus 402 YG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~~ni 481 (699)
T PLN02631 402 YGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISRLNL 481 (699)
T ss_pred CCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhcCce
Confidence 99875556788999999999999999999999987654333344689999999999999999999876554444556799
Q ss_pred EEEEEEeCCCCCC--CccccccceeecccCCCCCCceeeeCCCchhHHHHHHHHHHHHHHHHHHhhhheeeccccCCCCc
Q 005553 481 QIEAYVTREKQPT--TDNSKLIRALWFKPLATDAPISSVLGPNRWLWLGAIISSSFIIFLILIGIVGSYYIYPIDHNSNQ 558 (691)
Q Consensus 481 ~i~iyvTr~~~~~--~~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (691)
++++|+||++++. .+..+..++.||+|+++|+|++++.||++|+|+|++++|||++|++++|+++||||||+|||+++
T Consensus 482 ~i~iyVTR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lw~~~~~~~s~~~f~~~~~~~~~y~i~~~~~~~~~ 561 (699)
T PLN02631 482 RIEAYITREDKKPETTDDHRLLQTKWFKPQPLDSPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGS 561 (699)
T ss_pred EEEEEEcCCCCCcccccccccccccccccCCCCCCceeeecCCccHHHHHHHHHHHHHHHHHHHhhheeEecccCCCCCc
Confidence 9999999998665 44468889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhcccceeeeecccchhhhh----hhhhcccCCCCCCCCCCcccccccccccCCCCCcccee
Q 005553 559 IFSFTLRAFLNMLVLCVSIAATASAAVLWNKKQNAKEA----TQIQHMEGSTPAGSPNSWFYNADRELESLPRQSLIQAT 634 (691)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (691)
+|+||++++++|+..|++|+++|+++++||||++++++ +|+|+.|+++|..+|++|.+|+|+|+||.|+|+++|+|
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (699)
T PLN02631 562 IYNFSYRGLWDMFLGSVCIFISSSIVFLWRKKQNKEGDKESKKQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQAT 641 (699)
T ss_pred ccchHHHHHHHHHHHHhheeccceeeeeechhhccccccchhhccccccCCCCCCCCcccccccchhhhcccccccccce
Confidence 99999999999999999989899999999999999988 99999999999999999999999999999999999999
Q ss_pred eEEeCCCCChHHHHhhcCCc-eEEEEeeCCcchHHHHHHHHHcCCCCceEEEeecccC
Q 005553 635 IVHYGKRPELKRMLFECKES-SVGVLVSGPKRMRHEVATICSSGLAANLHFESISFSW 691 (691)
Q Consensus 635 ~v~~g~RP~~~~i~~~~~~~-~VGVlvcGP~~m~~~Va~~c~~~~~~~~~f~s~~f~~ 691 (691)
|||||+||||||||.|++|+ ||||||||||+||+|||++|||+|++|||||||||||
T Consensus 642 ~~~~g~rp~~~~i~~~~~~~~~vgvlv~gp~~~~~~va~~c~s~~~~~~~f~s~sf~~ 699 (699)
T PLN02631 642 SVHFGSKPNLKKILLEAEGSEDVGVMVCGPRKMRHEVAKICSSGLAKNLHFEAISFNW 699 (699)
T ss_pred eeeecCCCCHHHHHHhccCCCceeEEEECcHHHHHHHHHHHhcCCCcceeEEeecccC
Confidence 99999999999999999876 9999999999999999999999999999999999999
No 2
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=2.3e-148 Score=1269.40 Aligned_cols=676 Identities=61% Similarity=1.125 Sum_probs=610.2
Q ss_pred CEehhhHhhHhhhccchhhhhhhhhhhhhccccceeeccccceehhhHHHHHHHHHHHHHHHHhhhhcCCCcc-ccccCc
Q 005553 1 MAVYLGTLMLWVLMPTNTYRQNWLPHLRAKFGFTTYFGAQGTTLLIYTFPILFIAVTGCLYLHLGNKLNDNNV-LERNGK 79 (691)
Q Consensus 1 ~~~~~~~~~~~~~~pt~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~y~~~vl~ia~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (691)
|++|+||+++|+|+||++|+++|++++++++++++|||.+|.++++|.+|++++|+++++|+++.++.+.++. ..+..+
T Consensus 20 ~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~~~~t~fg~~g~~~~~~~~p~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (702)
T PLN02292 20 MVILMGTIVIWIMMPTSTYKTIWLPSMRAKLGKSTYFGAPGVNLLVYMFPMILLACLGCIYLHLKKQTTVNQFNREVRKK 99 (702)
T ss_pred HHHHHHHHHHheeeccHHHHhhccHHHHHhccCCceecccchhhHHHhhHHHHHHHHHHHHheecccccccchhhccccc
Confidence 4689999999999999999999999999999789999999999999999999999999999999977532211 111124
Q ss_pred ccceeeeeeceEecCCCccchHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhHHhhhHHHHHHHhHHHHH
Q 005553 80 KHRLGIWKKPMLVKGPLGIVSGIELAFFMMLIALLIWSLSNYLHNSFADITPQSAAEEGVKVWQGKLESTALRFGLVGNI 159 (691)
Q Consensus 80 ~~~~~~~~~p~l~~~~~gi~t~~e~~~i~~~~~l~i~~~~~y~~~~~~~i~~~~~~~~~~~~~~~~~~~va~R~G~la~~ 159 (691)
++..+.|++|++|++|+|++|+.|.+++++|+++++|++++|.+.++..++|++..+.....|+++++.+|+|+|++|.+
T Consensus 100 ~~~~~~~~~p~lv~~~~G~vt~~e~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vg~R~Gila~~ 179 (702)
T PLN02292 100 GGKFGALRRPMLVKGPLGIVTVTEVMFLAMFMALLLWSLANYMYNTFVTITPQSAATDGESLWQARLDSIAVRLGLVGNI 179 (702)
T ss_pred ccceeeecCcEEeeCCcceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999888776555444568899999999999999999
Q ss_pred HHHHHHHhhcCcccchhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhhccchhhHHHHHHH
Q 005553 160 CLTLLFFPVARGSSVLPLFGLTSEASIKYHIWLGHMVMTLFTAHGVCYIIFWAVTNNISEMLQWAKIGISNVAGELALLS 239 (691)
Q Consensus 160 ~l~~l~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~~~~~~w~~~~~~~~~G~ial~~ 239 (691)
|||++++|++|||+++++|||+||+++.||||+||++++++++|+++|+++|..+++..++.+|..++..+++|++|+++
T Consensus 180 ~lpll~l~~~Rnn~L~~ltG~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~~~~~~w~~~~~~~i~G~iAlv~ 259 (702)
T PLN02292 180 CLAFLFYPVARGSSLLAAVGLTSESSIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQVSQMLEWDRTGVSNLAGEIALVA 259 (702)
T ss_pred HHHHHHHHHhcCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877777777787677788999999999
Q ss_pred HHHHHHhccchhhhchhhHHHHHHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccccceEEEEEEEEecCCE
Q 005553 240 GLAMWATTFPPIRRKFFELFFYTHYLYILFVVFFVFHVGISYSLIMLPSFYLFVVDRYLRFLQSRRAVRLVSARMLPGET 319 (691)
Q Consensus 240 l~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~~~~~~~v~~~i~l~~~dR~lR~~~~~~~~~v~s~~~l~~~~ 319 (691)
+++|+++|++++||++||+|+++|++++++++++++|++..+..++++++++|++||++|++|++.++++++++.+++|+
T Consensus 260 ~~il~v~Sl~~iRR~~YE~F~~~HiL~~v~~v~~~~H~~~~~~~~~~~~i~l~~~DR~lR~~r~~~~~~Iv~~~~l~~dv 339 (702)
T PLN02292 260 GLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVFHVGISFALISFPGFYIFLVDRFLRFLQSRNNVKLVSARVLPCDT 339 (702)
T ss_pred HHHHHHHhhHHHHhcccHhHHHHHHHHHHHHeeeehhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEEEcCCCE
Confidence 99999999999999999999999999988888889999877777788999999999999999988889999999999999
Q ss_pred EEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhcCCCCCceeEEEEEC
Q 005553 320 VELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSSPSSIDRLDVSVEG 399 (691)
Q Consensus 320 ~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~~g~~~~~~~v~VeG 399 (691)
+++++++++.++++||||+|+++|..+++|+|||||+|+|++++++++++||..|++|++|++.++.+++.+++++.+||
T Consensus 340 v~L~~~~~~~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~gd~i~~~~V~VeG 419 (702)
T PLN02292 340 VELNFSKNPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSSSDQIDRLAVSVEG 419 (702)
T ss_pred EEEEEEcCCCCCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCCCCccccceEEEEC
Confidence 99999998888999999999999998899999999999885467889999999999999999998888766667899999
Q ss_pred CCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCC-CCCCCC
Q 005553 400 PYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTP-TELPNL 478 (691)
Q Consensus 400 PYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~-~~~~~~ 478 (691)
|||+...+..+++++++||||+||||++|+++++.++.+++.++.++++|+|++|+++|+.++|++.+++... +..++.
T Consensus 420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~ 499 (702)
T PLN02292 420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSFI 499 (702)
T ss_pred CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcC
Confidence 9998765566789999999999999999999999876433223347899999999999999999888765321 112457
Q ss_pred ceEEEEEEeCCCCCCCcc----ccccceeecccCCCCCCceeeeCCCchhHHHHHHHHHHHHHHHHHHhhhheeeccccC
Q 005553 479 KLQIEAYVTREKQPTTDN----SKLIRALWFKPLATDAPISSVLGPNRWLWLGAIISSSFIIFLILIGIVGSYYIYPIDH 554 (691)
Q Consensus 479 ~l~i~iyvTr~~~~~~~~----~~~~~~~~~~P~~~~~~~~~v~gp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 554 (691)
++++++|+||+++++.|. .+..++++++|+++|++++.+|||++|+|+|++++|||++|++++|+++||||||+||
T Consensus 500 ~~~i~iyvTr~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w~~~~~~~s~~~f~~~~~~~~~y~~~~~~~ 579 (702)
T PLN02292 500 DIQIKAFVTREKEAGVKESTGNMNIIKTLWFKPNLSDQPISPILGPNSWLWLAAILSSSFLIFIIIIAIITRYHIYPIDQ 579 (702)
T ss_pred CceEEEEEeCCCCCCCcccccchhhhhhhcCCCCCCCCceEEEeCCCchHHHHHHHHHHHHHHHHHHHHhheeEeccccC
Confidence 999999999998765543 2445678899999999999999999999999999999999999999999999999999
Q ss_pred CCCccccchHHHHHHHHHHHHHhhcccceeeeecccchhh-hhhhhhcccCCCCCCCCCCcccccccccccCCCCCccce
Q 005553 555 NSNQIFSFTLRAFLNMLVLCVSIAATASAAVLWNKKQNAK-EATQIQHMEGSTPAGSPNSWFYNADRELESLPRQSLIQA 633 (691)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (691)
|+++ |+||++++++|+++|+||+++|+++++||||++.+ |.+|+|+.+.+ +|+||.|+|+++|+
T Consensus 580 ~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 644 (702)
T PLN02292 580 NSNK-YTLAYKSLIYLLVISISVVATSTAAMLWNKKKYYKKSSQQVDNVDSP--------------REIESSPQQLLVQR 644 (702)
T ss_pred CCCC-CccHHHHHHHHHHHHHHhhhhhhHHHhhcccccccchhccccccccc--------------cccccCcccccccc
Confidence 9987 99999999999999999999999999999998877 88899886433 57889999999999
Q ss_pred eeEEeCCCCChHHHHhhcCCceEEEEeeCCcchHHHHHHHHHcCCCCceEEEeecccC
Q 005553 634 TIVHYGKRPELKRMLFECKESSVGVLVSGPKRMRHEVATICSSGLAANLHFESISFSW 691 (691)
Q Consensus 634 ~~v~~g~RP~~~~i~~~~~~~~VGVlvcGP~~m~~~Va~~c~~~~~~~~~f~s~~f~~ 691 (691)
||+|||+||||||||++++|+||||||||||+||+|||++|||+|++|||||||||||
T Consensus 645 ~~~~~g~rp~~~~i~~~~~~~~vgvlv~gp~~~~~~va~~c~s~~~~~~~~~s~sf~~ 702 (702)
T PLN02292 645 TNIHYGERPNLNKLLVGLKGSSVGVLVCGPKKMRQKVAKICSSGLAENLHFESISFSW 702 (702)
T ss_pred eeeeccCCCCHHHHHHhcCCCceeEEEECcHHHHHHHHHHHhcCCCcceeEEeecccC
Confidence 9999999999999999999999999999999999999999999999999999999999
No 3
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=1.5e-130 Score=1125.77 Aligned_cols=666 Identities=33% Similarity=0.685 Sum_probs=568.8
Q ss_pred CEehhhHhhHhhhccchhhhhhhhhhhhhccccceeeccccceehhhHHHHHHHHHHHHHHHHhhhhcCCCccccccCcc
Q 005553 1 MAVYLGTLMLWVLMPTNTYRQNWLPHLRAKFGFTTYFGAQGTTLLIYTFPILFIAVTGCLYLHLGNKLNDNNVLERNGKK 80 (691)
Q Consensus 1 ~~~~~~~~~~~~~~pt~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~y~~~vl~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (691)
|++|+||+++|+|+||++|+++|++..+.. +++|||+||.++++|.+|++++|+++++|+++.++.+.+ +.+++
T Consensus 15 ~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~--~~t~fg~~g~~~~~~~~p~~~~a~~~~~yl~~~~~~~~~----~~~~~ 88 (722)
T PLN02844 15 ILIFAGWIALWILKPTNLWTRKWKQAEDSA--RHTVFGYYGLNFAVYTFPPIALAIIGLVYLSLLSQEPHR----RRGAR 88 (722)
T ss_pred HHHHHHHHHHheeeCCHHHHhhhhhHHhcc--cCceecccchhhHhHhhHHHHHHHHHHHheeeccccCcc----ccccc
Confidence 468999999999999999999999976665 799999999999999999999999999999999875531 22222
Q ss_pred cceeeeeeceEecCCCccchHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhHHhhhHHHHHHHhHHHHHH
Q 005553 81 HRLGIWKKPMLVKGPLGIVSGIELAFFMMLIALLIWSLSNYLHNSFADITPQSAAEEGVKVWQGKLESTALRFGLVGNIC 160 (691)
Q Consensus 81 ~~~~~~~~p~l~~~~~gi~t~~e~~~i~~~~~l~i~~~~~y~~~~~~~i~~~~~~~~~~~~~~~~~~~va~R~G~la~~~ 160 (691)
.+...+++|++|++|+|++|..|++++++|+++++|.++.|.+.+|..+.|.+. .+...|+.++..+|+|+|++|.+|
T Consensus 89 ~~~~~~~~p~lv~~~~givs~~e~~~~~~f~~~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~va~R~G~la~~~ 166 (722)
T PLN02844 89 SATIGVSNPVIVNSFIGILSCLEILAVLLFFLFLAWTFYARISNDFKKLMPVKS--LNLNLWQLKYLRVATRFGLLAEAC 166 (722)
T ss_pred cccccccCcEEecCCceeeeHHHHHHHHHHHHHHHHHHHHHHHhhhhhhCcccc--ccchhHHHHHHHHHHHHHHHHHHH
Confidence 333346999999999999999999999999999999999999999988877553 345689999999999999999999
Q ss_pred HHHHHHhhcCcccchhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH-HHHHHHhhccchhhHHHHHHH
Q 005553 161 LTLLFFPVARGSSVLPLFGLTSEASIKYHIWLGHMVMTLFTAHGVCYIIFWAVTNNIS-EMLQWAKIGISNVAGELALLS 239 (691)
Q Consensus 161 l~~l~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~~-~~~~w~~~~~~~~~G~ial~~ 239 (691)
||++++|++|||++.+++|++||++++||||+||++++++++|+++|++.|...+... +++.|..++..+++|++|+++
T Consensus 167 Lpll~llv~Rnn~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~~~~~w~~~~~~~~~G~IAlv~ 246 (722)
T PLN02844 167 LALLLLPVLRGLALFRLLGIQFEASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQDEIWKWQKTGRIYLAGEIALVT 246 (722)
T ss_pred HHHHHHHHhcccHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhccCcchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888776653 567787777778999999999
Q ss_pred HHHHHHhccchhhhchhhHHHHHHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccccceEEEEEEEEecCCE
Q 005553 240 GLAMWATTFPPIRRKFFELFFYTHYLYILFVVFFVFHVGISYSLIMLPSFYLFVVDRYLRFLQSRRAVRLVSARMLPGET 319 (691)
Q Consensus 240 l~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~~~~~~~v~~~i~l~~~dR~lR~~~~~~~~~v~s~~~l~~~~ 319 (691)
+++|+++|++++||++||+|+++|++++++++++++|++..+.+|+++++++|++||++|+++++....+++++..++++
T Consensus 247 l~iL~itSl~~iRR~~YElF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRllR~~~s~~~~~vvs~~~~~~~~ 326 (722)
T PLN02844 247 GLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLRIVQSRPETCILSARLFPCKA 326 (722)
T ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHhheEEEeeeEEEEEEEEecCCE
Confidence 99999999999999999999999999988899999999876667899999999999999999887666777888899999
Q ss_pred EEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhcCC-----CCCceeE
Q 005553 320 VELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSSP-----SSIDRLD 394 (691)
Q Consensus 320 ~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~~g-----~~~~~~~ 394 (691)
+++++++++.++++||||+++++|..+++|+|||||+|+|+.+++.+++.||..||+|++|++.++.+ +...+++
T Consensus 327 v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~~g~~~~~~~~ 406 (722)
T PLN02844 327 IELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSETNQMNCIP 406 (722)
T ss_pred EEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhccCCCCcccceE
Confidence 99999998889999999999999999999999999999876567899999999999999999877532 1223468
Q ss_pred EEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCC
Q 005553 395 VSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTE 474 (691)
Q Consensus 395 v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~ 474 (691)
+.||||||....+..+++++++||||+||||++|+++++.++++......++|+|+|++|+.+|+.+.|++.+.+.+. .
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~-~ 485 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQ-S 485 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHh-H
Confidence 999999999865667789999999999999999999999875432222346899999999999999999986543211 1
Q ss_pred CCCCceEEEEEEeCCCCCCC------ccccccceeecccCCCCCCceeeeCCCchhHHHHHHHHHHHHHHHHHHhhhhee
Q 005553 475 LPNLKLQIEAYVTREKQPTT------DNSKLIRALWFKPLATDAPISSVLGPNRWLWLGAIISSSFIIFLILIGIVGSYY 548 (691)
Q Consensus 475 ~~~~~l~i~iyvTr~~~~~~------~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 548 (691)
.+..++++++|+||++.+.. ++++..+++.+.|.. +.+.+|||++|+|||+++++||++|++++|+++|||
T Consensus 486 ~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~---~~~~i~G~~~~lw~~~~~~~s~~~f~~~~~~~~~~~ 562 (722)
T PLN02844 486 SNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTKC---SRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIF 562 (722)
T ss_pred HHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCCCC---CceEEeCCCchHHHHHHHHHHHHHHHHHHHHHheEE
Confidence 13358999999999986532 345666777777754 448999999999999999999999999999999999
Q ss_pred eccccCCC---------------CccccchHHHHHHHHHHHHHhhcccceeeeecccchhhhhhhhhcccCCCCCCCCCC
Q 005553 549 IYPIDHNS---------------NQIFSFTLRAFLNMLVLCVSIAATASAAVLWNKKQNAKEATQIQHMEGSTPAGSPNS 613 (691)
Q Consensus 549 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (691)
| |+|||+ .++++||+++++++++|+++|++.|.++++|++++++++.+...+++...+
T Consensus 563 i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 635 (722)
T PLN02844 563 I-PSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEIPRVSQKQGIKP------ 635 (722)
T ss_pred e-ccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeeccccccCCccccccccCCC------
Confidence 9 999877 467789999999999999999997777778984444444333221111111
Q ss_pred cccccccccccCCCCCccceeeEEeCCCCChHHHHhhc----CCceEEEEeeCCcchHHHHHHHHHcCCC----------
Q 005553 614 WFYNADRELESLPRQSLIQATIVHYGKRPELKRMLFEC----KESSVGVLVSGPKRMRHEVATICSSGLA---------- 679 (691)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~v~~g~RP~~~~i~~~~----~~~~VGVlvcGP~~m~~~Va~~c~~~~~---------- 679 (691)
.++.+| ...++++++++|||+||||||||.++ +|+||||||||||+||+|||++||++|.
T Consensus 636 --~~~~~~----~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~ 709 (722)
T PLN02844 636 --EEGSME----KRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKR 709 (722)
T ss_pred --CCcccc----ccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhccccccccccccc
Confidence 111111 45678899999999999999999888 6789999999999999999999999654
Q ss_pred -CceEEEeecccC
Q 005553 680 -ANLHFESISFSW 691 (691)
Q Consensus 680 -~~~~f~s~~f~~ 691 (691)
++|||||+|||+
T Consensus 710 ~~~~~~hs~~f~l 722 (722)
T PLN02844 710 KMYFSFHSLNFTL 722 (722)
T ss_pred CCceeeeecccCC
Confidence 899999999996
No 4
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-67 Score=607.32 Aligned_cols=572 Identities=26% Similarity=0.435 Sum_probs=434.4
Q ss_pred ehhhHhhHhhhccchhhhhhhhhhhhhccccceeeccccceehhhHHHHHHHHHHHHHHHHhhhhcCCCccccccCcccc
Q 005553 3 VYLGTLMLWVLMPTNTYRQNWLPHLRAKFGFTTYFGAQGTTLLIYTFPILFIAVTGCLYLHLGNKLNDNNVLERNGKKHR 82 (691)
Q Consensus 3 ~~~~~~~~~~~~pt~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~y~~~vl~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (691)
++++| ..|++.++..+++.|.+.+|.+. ..|++..+..++....+....+.....+ .+......+.. +.. +...
T Consensus 47 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~y~~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~~~ 120 (646)
T KOG0039|consen 47 ISANW-LSLIKKQTEEYAALIMEELDPDH--KGYITNEDLEILLLQIPTLLFAILLSFA-NLSLLLSQPLK-PTR-RKPL 120 (646)
T ss_pred HHhhh-hhhhhhhhhHHHHHhhhhccccc--cceeeecchhHHHHhchHHHHHHHHHHH-HHHhhhccccc-ccc-cccc
Confidence 56789 99999999999999999998884 4488889999999989988888877775 22211111111 111 1122
Q ss_pred eeeeeeceEecCCCccchHHHHHHHHHHHHHHHHhhhcccccc-----cccccccccccccc--hhHHhhhHHHHHHHhH
Q 005553 83 LGIWKKPMLVKGPLGIVSGIELAFFMMLIALLIWSLSNYLHNS-----FADITPQSAAEEGV--KVWQGKLESTALRFGL 155 (691)
Q Consensus 83 ~~~~~~p~l~~~~~gi~t~~e~~~i~~~~~l~i~~~~~y~~~~-----~~~i~~~~~~~~~~--~~~~~~~~~va~R~G~ 155 (691)
.+..+++..+....+..++.+.+++.+++++..|.+..|.+.. +..+.........- ......+..+.+|.|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~~~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~ 200 (646)
T KOG0039|consen 121 LRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFTWRFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNRLTF 200 (646)
T ss_pred chheeeeeeeeccceEeeeeehHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHH
Confidence 2333444333445788899999999999999999887765543 11111001111111 1223345678899999
Q ss_pred HHHHHHHHHHHhhcCcccchhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHhhccchhhHH
Q 005553 156 VGNICLTLLFFPVARGSSVLPLFGLTSEASIKYHIWLGHMVMTLFTAHGVCYIIFWAVTNNI-SEMLQWAKIGISNVAGE 234 (691)
Q Consensus 156 la~~~l~~l~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~-~~~~~w~~~~~~~~~G~ 234 (691)
++....++.++|..||+.+.+++|++++.++.+|+|+|++++...++|+..+.+.|..++.. .+...|..++..+++|+
T Consensus 201 L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGv 280 (646)
T KOG0039|consen 201 LRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLHIWLHLVNFFPFLVHGLEYTISLASELFFLPKTYKWLLLGVVGLTGV 280 (646)
T ss_pred HHHhhhhheEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhhhhhhcCCCcchhH
Confidence 98888888779999999999999999999999999999999999999999999999877644 34566777888899999
Q ss_pred HHHHHHHHHHHhccchhhhchhhHHHHHHHhHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHhhccccceEEE
Q 005553 235 LALLSGLAMWATTFPPIRRKFFELFFYTHYLYILFVVFFVFHVG-----ISYSLIMLPSFYLFVVDRYLRFLQSRRAVRL 309 (691)
Q Consensus 235 ial~~l~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~-----~~~~~~v~~~i~l~~~dR~lR~~~~~~~~~v 309 (691)
++++++++|+++|++++||+.||.|+++|++++++++++.+|+. ..|.+++.+ +.+|++||++|+.|+..++++
T Consensus 281 ~~~i~~~im~v~s~~~fRR~~~e~F~ytH~l~~v~~illi~hg~~~~~~~~w~~~~~p-~~ly~~dR~~r~~r~~~~~~i 359 (646)
T KOG0039|consen 281 ILLILMLIMFVLSLPFFRRRFYEAFWYTHHLYIVFYILLIIHGGFRLLGTTWMYIAVP-VLLYILDRILRFLRSQKNVKI 359 (646)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHhcCceE
Confidence 99999999999999999999999999999999999999999987 566666666 889999999999999888999
Q ss_pred EEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhcC-CC
Q 005553 310 VSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSS-PS 388 (691)
Q Consensus 310 ~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~~-g~ 388 (691)
+++..+|+|+++++++||++++|+||||+|+++|.++++|||||||+|+| ++++++++||++||||++|++.+.+ .+
T Consensus 360 ~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~g~wT~~L~~~~~~~~~ 437 (646)
T KOG0039|consen 360 AKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKALGDWTEKLRNAFSEVSQ 437 (646)
T ss_pred EEEEEcCCCeEEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEecCcHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999 5789999999999999999998873 21
Q ss_pred --CC----ceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHH
Q 005553 389 --SI----DRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTML 462 (691)
Q Consensus 389 --~~----~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~ 462 (691)
+. ...++.||||||+++.+..+||++++|+||+|+||++|++++++.+.+.++.+.+
T Consensus 438 ~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~----------------- 500 (646)
T KOG0039|consen 438 PPESDKSYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAP----------------- 500 (646)
T ss_pred cccccccccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCc-----------------
Confidence 11 2678999999999988899999999999999999999999999987653321111
Q ss_pred HhhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceeecccCCCCCCceeeeCCCchhHHHHHHHHHHHHHHHHHH
Q 005553 463 DLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALWFKPLATDAPISSVLGPNRWLWLGAIISSSFIIFLILIG 542 (691)
Q Consensus 463 d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~~~~~~~~~s~~~~~~~~~ 542 (691)
.+|.+....+++..+.|. .-...||..|.-++.
T Consensus 501 ----------------------------------------------~~~~~~~~~~~~~~F~Wv-~~~~~sf~wf~~~l~ 533 (646)
T KOG0039|consen 501 ----------------------------------------------TSDYSDSLKLKKVYFYWV-TREQRSFEWFKGLLT 533 (646)
T ss_pred ----------------------------------------------cccccccceecceeEEEE-eccccchHHHHHHHH
Confidence 123334445555566666 556667777777777
Q ss_pred hhhheeeccccCCCCccccchHHHHHHHHHHHHHhhcccceeeeecccchhhhhhhhhcccCCCCCCCCCCccccccccc
Q 005553 543 IVGSYYIYPIDHNSNQIFSFTLRAFLNMLVLCVSIAATASAAVLWNKKQNAKEATQIQHMEGSTPAGSPNSWFYNADREL 622 (691)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (691)
.+++|...++. + +.+.++++..-.++++.. .+..+....
T Consensus 534 ~v~~~~~~~~~---------------e-----~~~~~t~~~~~~d~~~~~------~~~~~~~~~--------------- 572 (646)
T KOG0039|consen 534 EVEEYDSSGVI---------------E-----LHNYVTSSYEEGDARSAL------IQMVQKLLH--------------- 572 (646)
T ss_pred HHHHHHhcCCc---------------h-----hheehhHhHhhhhhhhHH------HHHHHhhcc---------------
Confidence 77777554431 1 111122222222333322 111111111
Q ss_pred ccCCCCCccc-eeeEEeCCCCChHHHHhhcC----CceEEEEeeCCcchHHHHHHHHHcC---CCCceEEEeecc
Q 005553 623 ESLPRQSLIQ-ATIVHYGKRPELKRMLFECK----ESSVGVLVSGPKRMRHEVATICSSG---LAANLHFESISF 689 (691)
Q Consensus 623 ~~~~~~~~~~-~~~v~~g~RP~~~~i~~~~~----~~~VGVlvcGP~~m~~~Va~~c~~~---~~~~~~f~s~~f 689 (691)
+.+.+|.++ .+..++++|||++++|.+.+ +.+|||++|||++|.++|+++|++. .+++||||..||
T Consensus 573 -~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~~~~~~~f~~E~F 646 (646)
T KOG0039|consen 573 -AKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSSTATRFEFHKENF 646 (646)
T ss_pred -cccCccccccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccccCceeeeeeccC
Confidence 012234433 33444555999999999993 3359999999999999999999997 558999999988
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=312.23 Aligned_cols=312 Identities=21% Similarity=0.286 Sum_probs=230.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcCcccchhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhc-------h--
Q 005553 147 ESTALRFGLVGNICLTLLFFPVARGSSVLPLFGLTSEASIKYHIWLGHMVMTLFTAHGVCYII-FWAVTN-------N-- 216 (691)
Q Consensus 147 ~~va~R~G~la~~~l~~l~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlg~~~~~~~~vH~i~~~~-~~~~~~-------~-- 216 (691)
.....-+|.+|.+.|.+.+++++|-+.+...++ +.|+.+++|||.|.+++++.+.|-+.+.. .|.... +
T Consensus 38 ~~~~qf~g~iaL~~msl~~~LA~R~~~iE~~~~-GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w~~~~~l~~k~a~v~ 116 (438)
T COG4097 38 LEFSQFLGFIALALMSLIFLLATRLPLIEAWFN-GLDKIYRFHKYTSILAILLLLAHNFILFIGNWLTLQLLNFKPAPVK 116 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHhhhhh-hhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcchhcccccccccccc
Confidence 345666789999999999999999999988773 35799999999999999999999998654 333220 0
Q ss_pred --hHHHHHHHhhccchhhHHHHHHHHHHHHHhccchhhhchhhHHHHHHHhHHHHHHHHHhhhhh-------hH--HHHH
Q 005553 217 --ISEMLQWAKIGISNVAGELALLSGLAMWATTFPPIRRKFFELFFYTHYLYILFVVFFVFHVGI-------SY--SLIM 285 (691)
Q Consensus 217 --~~~~~~w~~~~~~~~~G~ial~~l~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~~-------~~--~~~v 285 (691)
...++.-. .-.|..+..++..|.+.+. .--+..||.|.+.|.++++..++..+|.-. ++ ..|.
T Consensus 117 ~~l~~~~~s~-----~elG~~~~yi~~~lllV~~-l~~~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~~~~~s~~a~swl 190 (438)
T COG4097 117 PSLAGMWRSA-----KELGEWSAYIFIGLLLVWR-LWLNIGYENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWL 190 (438)
T ss_pred hhhhhhhHHH-----HHHHHHHHHHHHHHHHHHH-HHHhcCchhHHHHHHHHHHHHHHHHHHHHHhcchhHhhccHHHHH
Confidence 01111100 1124333333333332221 123568999999999999888888999732 11 1122
Q ss_pred HHHH-H--HHHHHHH--Hhhccc-cceEEEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCC-CceeeeeEeeeC
Q 005553 286 LPSF-Y--LFVVDRY--LRFLQS-RRAVRLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSIS-KLQWHPFTVTSS 358 (691)
Q Consensus 286 ~~~i-~--l~~~dR~--lR~~~~-~~~~~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s-~~q~HPFTIas~ 358 (691)
..++ . +++.-+. .+..++ +...++...+..+.|+++++....+++.++||||.|+.++... +...|||||+++
T Consensus 191 ~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s 270 (438)
T COG4097 191 VIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACS 270 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEeccccccCCCCCeeeeeC
Confidence 2222 2 2222222 233333 4567777788889999999988877777999999999998653 567899999998
Q ss_pred CCCCCCeEEEEEEcCCchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCC-EEEEEecCCCcccHHHHHHHHHHhc
Q 005553 359 SNLEPEKLSVVIKGEGSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHD-TLVMVSGGSGITPFISVIRELMYAS 437 (691)
Q Consensus 359 p~~~~~~l~l~IK~~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~-~vvlVAGG~GITp~lsil~~L~~~~ 437 (691)
. +.++++|.||..||+|+.|++.++.|+ ++.||||||.+. ++++. +.|+||||+||||++|+++.+..+.
T Consensus 271 ~--~~sel~FsIK~LGD~Tk~l~dnLk~G~-----k~~vdGPYG~F~--~~~g~~~QVWIAGGIGITPFis~l~~l~~~~ 341 (438)
T COG4097 271 H--EGSELRFSIKALGDFTKTLKDNLKVGT-----KLEVDGPYGKFD--FERGLNTQVWIAGGIGITPFISMLFTLAERK 341 (438)
T ss_pred C--CCceEEEEehhhhhhhHHHHHhccCCc-----eEEEecCcceee--cccCCcccEEEecCcCcchHHHHHHhhcccc
Confidence 6 345899999999999999999999998 899999999984 44443 4999999999999999999988743
Q ss_pred ccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEE
Q 005553 438 TVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEA 484 (691)
Q Consensus 438 ~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~i 484 (691)
. .+.|+|++++|+.++..+.+|++... .+.+++.+|+
T Consensus 342 s-----~~~V~L~Y~~~n~e~~~y~~eLr~~~-----qkl~~~~lHi 378 (438)
T COG4097 342 S-----DPPVHLFYCSRNWEEALYAEELRALA-----QKLPNVVLHI 378 (438)
T ss_pred c-----CCceEEEEEecCCchhHHHHHHHHHH-----hcCCCeEEEE
Confidence 2 57899999999999999999997653 3567888887
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.97 E-value=8.5e-30 Score=256.66 Aligned_cols=173 Identities=34% Similarity=0.571 Sum_probs=134.1
Q ss_pred EEEEEec-CCEEEEEEecCCCCccCCCCEEEEEeCCC-CCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhcC-
Q 005553 310 VSARMLP-GETVELNFSKAPGLSYNPTSIMFINVPSI-SKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSS- 386 (691)
Q Consensus 310 ~s~~~l~-~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~-s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~~- 386 (691)
++++.++ +++++++++.+..+.++||||++|++|.. +++|+|||||+|.+.++++.++|+||..+|+|+++.+.+..
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 3567788 99999999988778899999999999988 78899999999998632589999999996667777776652
Q ss_pred CCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHH-Hhh
Q 005553 387 PSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTML-DLL 465 (691)
Q Consensus 387 g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~-d~l 465 (691)
.+.....++.++||||.+..+..++++++|||||+||||++|++++++++.++ ....++++|+|++|+.+++.|+ +++
T Consensus 82 ~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~-~~~~~~v~l~w~~r~~~~~~~~~~~l 160 (210)
T cd06186 82 PGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK-TSRTRRVKLVWVVRDREDLEWFLDEL 160 (210)
T ss_pred cCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc-cCCccEEEEEEEECCHHHhHHHHHHH
Confidence 11112458999999999853466789999999999999999999999876421 1235689999999999997655 555
Q ss_pred cccCCCCCCCCCCceEEEEEEeC
Q 005553 466 LPISGTPTELPNLKLQIEAYVTR 488 (691)
Q Consensus 466 ~~~~~~~~~~~~~~l~i~iyvTr 488 (691)
.+.. ...... ++++|+|+
T Consensus 161 ~~~~----~~~~~~-~~~i~~T~ 178 (210)
T cd06186 161 RAAQ----ELEVDG-EIEIYVTR 178 (210)
T ss_pred Hhhh----hccCCc-eEEEEEee
Confidence 3201 011111 78999998
No 7
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.92 E-value=2.4e-24 Score=222.22 Aligned_cols=211 Identities=23% Similarity=0.336 Sum_probs=161.5
Q ss_pred HHHHHhhccc-----cceEEEEEEEEecCCEEEEEEecCCC-CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEE
Q 005553 294 VDRYLRFLQS-----RRAVRLVSARMLPGETVELNFSKAPG-LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLS 367 (691)
Q Consensus 294 ~dR~lR~~~~-----~~~~~v~s~~~l~~~~~~l~~~~~~~-~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~ 367 (691)
+||++|.++. ...+++.+++.+++++.++++..+.. ..++||||+.|.+|..+...+|||||+|.+..+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 5888888664 23577888999999999999987654 46999999999997656567899999998741367899
Q ss_pred EEEEcC--CchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCC
Q 005553 368 VVIKGE--GSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTP 445 (691)
Q Consensus 368 l~IK~~--Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~ 445 (691)
|.||.. |..|+.|.+.++.|+ ++.++||||.+..+....+++++||||+||||++++++++.... ..+
T Consensus 82 ~~ik~~~~G~~s~~l~~~~~~Gd-----~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~-----~~~ 151 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHLAPGD-----VVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG-----PTA 151 (243)
T ss_pred EEEEEcCCCcchhHHHhcCCCCC-----EEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC-----CCC
Confidence 999997 889999998788887 79999999997433334789999999999999999999987653 246
Q ss_pred eEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceee--cccCCCCCCceeeeCCCch
Q 005553 446 QVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALW--FKPLATDAPISSVLGPNRW 523 (691)
Q Consensus 446 ~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~--~~P~~~~~~~~~v~gp~~~ 523 (691)
++.++|++|+.+++.+.+++.+.. .+..+++++.++|++ ...+...+... ..+.. ......+|||++|
T Consensus 152 ~i~l~~~~r~~~~~~~~~el~~l~-----~~~~~~~~~~~~s~~----~~~g~~~~~~l~~~~~~~-~~~~vyvcGp~~m 221 (243)
T cd06216 152 DVVLLYYARTREDVIFADELRALA-----AQHPNLRLHLLYTRE----ELDGRLSAAHLDAVVPDL-ADRQVYACGPPGF 221 (243)
T ss_pred CEEEEEEcCChhhhHHHHHHHHHH-----HhCCCeEEEEEEcCC----ccCCCCCHHHHHHhccCc-ccCeEEEECCHHH
Confidence 899999999999998888886542 235678998888875 11122111111 11211 2357789999985
Q ss_pred h
Q 005553 524 L 524 (691)
Q Consensus 524 ~ 524 (691)
.
T Consensus 222 ~ 222 (243)
T cd06216 222 L 222 (243)
T ss_pred H
Confidence 4
No 8
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.92 E-value=2e-24 Score=220.00 Aligned_cols=197 Identities=16% Similarity=0.250 Sum_probs=153.6
Q ss_pred EEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHHHhhc
Q 005553 308 RLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLYQVLS 385 (691)
Q Consensus 308 ~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~l~ 385 (691)
++++++.+++++++++++.+...+++||||+.|++|.. ++|||||+|.+. +++.+++.||.. |.+|+.|.+.++
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPH-EDGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCC-CCCeEEEEEEecCCCccHHHHHHhcc
Confidence 57788899999999999987777899999999999864 489999999885 467899999986 779999998888
Q ss_pred CCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhh
Q 005553 386 SPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLL 465 (691)
Q Consensus 386 ~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l 465 (691)
.|+ ++.++||||.+......+++++|||||+||||++++++++..+.. .++++|+|++|+.+++.+.+++
T Consensus 78 ~G~-----~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~-----~~~v~l~~~~r~~~~~~~~~~l 147 (224)
T cd06189 78 ENG-----LVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGS-----KRPIHLYWGARTEEDLYLDELL 147 (224)
T ss_pred CCC-----EEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCC-----CCCEEEEEecCChhhccCHHHH
Confidence 887 799999999985433457899999999999999999999987542 4689999999999999888888
Q ss_pred cccCCCCCCCCCCceEEEEEEeCCCC-CCCccccccceeec-ccCCCCCCceeeeCCCchh
Q 005553 466 LPISGTPTELPNLKLQIEAYVTREKQ-PTTDNSKLIRALWF-KPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 466 ~~~~~~~~~~~~~~l~i~iyvTr~~~-~~~~~~~~~~~~~~-~P~~~~~~~~~v~gp~~~~ 524 (691)
.+.. ....++++..+++++++ .....+...+.+.- .+. .......+|||++|.
T Consensus 148 ~~l~-----~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~~-~~~~~v~vCGp~~m~ 202 (224)
T cd06189 148 EAWA-----EAHPNFTYVPVLSEPEEGWQGRTGLVHEAVLEDFPD-LSDFDVYACGSPEMV 202 (224)
T ss_pred HHHH-----HhCCCeEEEEEeCCCCcCCccccccHHHHHHhhccC-ccccEEEEECCHHHH
Confidence 6553 23467888888887643 22222332222211 111 233567899999943
No 9
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.92 E-value=5.8e-24 Score=217.29 Aligned_cols=200 Identities=22% Similarity=0.335 Sum_probs=155.0
Q ss_pred EEEEEEEecCCEEEEEEecCCC--CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHHHh
Q 005553 308 RLVSARMLPGETVELNFSKAPG--LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLYQV 383 (691)
Q Consensus 308 ~v~s~~~l~~~~~~l~~~~~~~--~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~ 383 (691)
++++++.+++++.+++++.+.. ..++||||+.|++|..+...+|||||+|.|. +++.++|.||.. |..|+.|.+.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPS-RPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCC-CCCcEEEEEEEcCCCcchHHHHhc
Confidence 5778889999999999998765 6799999999999866666789999999885 556799999987 8899999877
Q ss_pred hcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHH
Q 005553 384 LSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLD 463 (691)
Q Consensus 384 l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d 463 (691)
++.|+ ++.++||||.+.......++++|||||+||||++++++++.+... .++++++|++|+.+++.+.+
T Consensus 81 ~~~G~-----~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~ 150 (231)
T cd06215 81 LKVGD-----ELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRP-----DADIVFIHSARSPADIIFAD 150 (231)
T ss_pred CCCCC-----EEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC-----CCcEEEEEecCChhhhhHHH
Confidence 88887 799999999985433347899999999999999999999876532 46799999999999999888
Q ss_pred hhcccCCCCCCCCCCceEEEEEEeCCCC--CCCccccccceeec--ccCCCCCCceeeeCCCchh
Q 005553 464 LLLPISGTPTELPNLKLQIEAYVTREKQ--PTTDNSKLIRALWF--KPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 464 ~l~~~~~~~~~~~~~~l~i~iyvTr~~~--~~~~~~~~~~~~~~--~P~~~~~~~~~v~gp~~~~ 524 (691)
++.+.. .+..+++++.++|++++ .....+...++... .+.+.+ ....+|||++|.
T Consensus 151 ~l~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~~v~icGp~~m~ 209 (231)
T cd06215 151 ELEELA-----RRHPNFRLHLILEQPAPGAWGGYRGRLNAELLALLVPDLKE-RTVFVCGPAGFM 209 (231)
T ss_pred HHHHHH-----HHCCCeEEEEEEccCCCCcccccCCcCCHHHHHHhcCCccC-CeEEEECCHHHH
Confidence 886542 23457899999998654 22222333322211 222232 356799999953
No 10
>PRK08051 fre FMN reductase; Validated
Probab=99.91 E-value=1.3e-23 Score=215.41 Aligned_cols=200 Identities=13% Similarity=0.183 Sum_probs=152.8
Q ss_pred ceEEEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCC--chhHHHHH
Q 005553 305 RAVRLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEG--SWSKKLYQ 382 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~G--g~T~~L~~ 382 (691)
..+++.+++.+++++.++++..+..++|+||||+++++|.. +.|||||+|.|. +++.++|.||..+ ..+.++.+
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~-~~~~l~~~v~~~~~~~~~~~~~~ 78 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPR-EKGFIELHIGASELNLYAMAVME 78 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCC-CCCcEEEEEEEcCCCcchHHHHH
Confidence 35678889999999999999877778899999999999753 579999999885 5678999999854 36778888
Q ss_pred hhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHH
Q 005553 383 VLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTML 462 (691)
Q Consensus 383 ~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~ 462 (691)
.++.|+ +|.|+||||.+.......++++|||||+||||++++++++..... .+++.++|++|+.+++.+.
T Consensus 79 ~l~~G~-----~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~-----~~~v~l~~g~r~~~~~~~~ 148 (232)
T PRK08051 79 RILKDG-----EIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQGP-----NRPITLYWGGREEDHLYDL 148 (232)
T ss_pred HcCCCC-----EEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCC-----CCcEEEEEEeccHHHhhhh
Confidence 888887 799999999985433456889999999999999999999987532 4679999999999999888
Q ss_pred HhhcccCCCCCCCCCCceEEEEEEeCCCCC-CCccccccceeec-ccCCCCCCceeeeCCCchh
Q 005553 463 DLLLPISGTPTELPNLKLQIEAYVTREKQP-TTDNSKLIRALWF-KPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 463 d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~-~~~~~~~~~~~~~-~P~~~~~~~~~v~gp~~~~ 524 (691)
+++.+.. ....+++++..++++++. ..+.+...+.+.- .+.+ ...-..+|||++|.
T Consensus 149 ~el~~l~-----~~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~~~~-~~~~vyicGp~~m~ 206 (232)
T PRK08051 149 DELEALA-----LKHPNLHFVPVVEQPEEGWQGKTGTVLTAVMQDFGSL-AEYDIYIAGRFEMA 206 (232)
T ss_pred HHHHHHH-----HHCCCcEEEEEeCCCCCCcccceeeehHHHHhhccCc-ccCEEEEECCHHHH
Confidence 8887653 233578888877765432 2233333332221 1111 22346889999954
No 11
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.91 E-value=8.8e-24 Score=215.80 Aligned_cols=199 Identities=19% Similarity=0.293 Sum_probs=153.9
Q ss_pred eEEEEEEEEecCCEEEEEEecCC--CCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHH
Q 005553 306 AVRLVSARMLPGETVELNFSKAP--GLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLY 381 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~~--~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~ 381 (691)
.+++++++.+++++.+++++.+. ...++||||+.|++|+.. ++|||||+|.|+ + +.++|+||.. |..|+.|.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ysi~s~~~-~-~~i~~~i~~~~~G~~s~~l~ 78 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTD--ETRSYSFSSAPG-D-PRLEFLIRLLPGGAMSSYLR 78 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCC--cccccccccCCC-C-CeEEEEEEEcCCCcchhhHH
Confidence 46788999999999999998766 567999999999998643 689999999875 3 7899999974 77899998
Q ss_pred HhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhH
Q 005553 382 QVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTM 461 (691)
Q Consensus 382 ~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~ 461 (691)
+.++.|+ ++.|+||+|.+... ...++++|||||+||||++++++++.... ..++++|+|++|+.+++.+
T Consensus 79 ~~l~~G~-----~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~-----~~~~v~l~~~~r~~~~~~~ 147 (228)
T cd06209 79 DRAQPGD-----RLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG-----SAHPVHLVYGVTRDADLVE 147 (228)
T ss_pred hccCCCC-----EEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC-----CCCcEEEEEecCCHHHhcc
Confidence 8788887 78999999998532 33488999999999999999999988653 2458999999999999998
Q ss_pred HHhhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceeecccCCCCCCceeeeCCCchh
Q 005553 462 LDLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 462 ~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
.+++.+.. ....+++++.++++++++....+...+.+.-.....++....+|||++|.
T Consensus 148 ~~~l~~l~-----~~~~~~~~~~~~s~~~~~~~~~g~v~~~~~~~~~~~~~~~v~icGp~~m~ 205 (228)
T cd06209 148 LDRLEALA-----ERLPGFSFRTVVADPDSWHPRKGYVTDHLEAEDLNDGDVDVYLCGPPPMV 205 (228)
T ss_pred HHHHHHHH-----HhCCCeEEEEEEcCCCccCCCcCCccHHHHHhhccCCCcEEEEeCCHHHH
Confidence 88887653 23467999999998765433333332221111011234557899999853
No 12
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.91 E-value=9.4e-24 Score=216.63 Aligned_cols=201 Identities=17% Similarity=0.263 Sum_probs=153.1
Q ss_pred eEEEEEEEEecCCEEEEEEecCCC------CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--Cchh
Q 005553 306 AVRLVSARMLPGETVELNFSKAPG------LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWS 377 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~~~------~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T 377 (691)
.+++++++.+++++++++++.+.. ..++||||+.|++|... ++|||||+|.|. +++.++|.||.. |.+|
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySi~s~~~-~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGTD--TRRSYSLANTPN-WDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCCc--cceecccCCCCC-CCCEEEEEEEEcCCCccc
Confidence 467888999999999999987654 67999999999998543 689999999885 467899999975 7799
Q ss_pred HHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCC
Q 005553 378 KKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSS 457 (691)
Q Consensus 378 ~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~ 457 (691)
+.|.+.++.|+ ++.|+||||.+..+....++++|||||+||||++++++++..... .++++|+|++|+.+
T Consensus 80 ~~l~~~~~~Gd-----~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~-----~~~v~l~~~~r~~~ 149 (236)
T cd06210 80 TYLETRAKVGQ-----RLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE-----PQEARLFFGVNTEA 149 (236)
T ss_pred hhhhhCcCCCC-----EEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCC-----CceEEEEEecCCHH
Confidence 99988788887 799999999975433356789999999999999999999876532 35899999999999
Q ss_pred chhHHHhhcccCCCCCCCCCCceEEEEEEeCCCC-CCCccccccceeec-ccCCCCCCceeeeCCCchh
Q 005553 458 DLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQ-PTTDNSKLIRALWF-KPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 458 ~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~-~~~~~~~~~~~~~~-~P~~~~~~~~~v~gp~~~~ 524 (691)
++.+.+++.+.. ....+++++..++++++ ...+.+...+.+.- .+.....+...+|||+++.
T Consensus 150 ~~~~~~~l~~l~-----~~~~~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l~~~~~~~~vyicGp~~m~ 213 (236)
T cd06210 150 ELFYLDELKRLA-----DSLPNLTVRICVWRPGGEWEGYRGTVVDALREDLASSDAKPDIYLCGPPGMV 213 (236)
T ss_pred HhhhHHHHHHHH-----HhCCCeEEEEEEcCCCCCcCCccCcHHHHHHHhhcccCCCcEEEEeCCHHHH
Confidence 999988887653 23467999988887542 22233332222111 1111123456799999854
No 13
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.91 E-value=1.4e-23 Score=215.00 Aligned_cols=203 Identities=19% Similarity=0.269 Sum_probs=154.6
Q ss_pred ceEEEEEEEEecCCEEEEEEecCCC--CccCCCCEEEEEeCCC-CCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHH
Q 005553 305 RAVRLVSARMLPGETVELNFSKAPG--LSYNPTSIMFINVPSI-SKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKK 379 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~~--~~~~pGQ~v~L~~p~~-s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~ 379 (691)
+.+++++++.+++++.++++..+.. ..++||||+.+++|.. +...+|||||+|.|. +++.++|.||.. |..|+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~-~~~~l~l~v~~~~~G~~s~~ 80 (235)
T cd06217 2 RVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPT-QRGRVELTVKRVPGGEVSPY 80 (235)
T ss_pred ceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCC-CCCeEEEEEEEcCCCcchHH
Confidence 4678899999999999999998766 6799999999999843 344679999999885 557899999986 668999
Q ss_pred HHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCch
Q 005553 380 LYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDL 459 (691)
Q Consensus 380 L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l 459 (691)
|.+.++.|+ ++.++||||.+.......+++++||||+||||++++++++..... .++++++|++|+.+++
T Consensus 81 l~~~l~~Gd-----~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~-----~~~i~l~~~~r~~~~~ 150 (235)
T cd06217 81 LHDEVKVGD-----LLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW-----PVPFRLLYSARTAEDV 150 (235)
T ss_pred HHhcCCCCC-----EEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC-----CceEEEEEecCCHHHh
Confidence 988788887 799999999974332346899999999999999999999886532 4689999999999999
Q ss_pred hHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC--CCccccccceeec--ccCCCCCCceeeeCCCchh
Q 005553 460 TMLDLLLPISGTPTELPNLKLQIEAYVTREKQP--TTDNSKLIRALWF--KPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 460 ~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~--~~~~~~~~~~~~~--~P~~~~~~~~~v~gp~~~~ 524 (691)
.+.+++.+.. ....+++++.++|++.+. ....+.......- .+. .......+|||++|.
T Consensus 151 ~~~~el~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~-~~~~~v~icGp~~m~ 213 (235)
T cd06217 151 IFRDELEQLA-----RRHPNLHVTEALTRAAPADWLGPAGRITADLIAELVPP-LAGRRVYVCGPPAFV 213 (235)
T ss_pred hHHHHHHHHH-----HHCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCC-ccCCEEEEECCHHHH
Confidence 8888886543 234578888888886321 1222322222111 121 233567899999954
No 14
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.91 E-value=8.5e-24 Score=215.02 Aligned_cols=197 Identities=18% Similarity=0.298 Sum_probs=151.9
Q ss_pred EEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHHHhhcCC
Q 005553 310 VSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLYQVLSSP 387 (691)
Q Consensus 310 ~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~l~~g 387 (691)
++++.+++++.++++..+....++||||+.|.+|..+. ++|||||+|.|. +++.++|.||.. |.+|+.|.+.++.|
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~-~~~~~~~~i~~~~~G~~s~~l~~~l~~G 79 (224)
T cd06187 2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPN-EDGEIEFHVRAVPGGRVSNALHDELKVG 79 (224)
T ss_pred eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCC-CCCEEEEEEEeCCCCcchHHHhhcCccC
Confidence 46778899999999988777889999999999986532 689999999875 457899999987 88999998878888
Q ss_pred CCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcc
Q 005553 388 SSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLP 467 (691)
Q Consensus 388 ~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~ 467 (691)
+ ++.++||||.+......++++++||||+||||++++++++.... ..+++.++|++|+.+++.+.+++..
T Consensus 80 ~-----~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~-----~~~~v~l~~~~~~~~~~~~~~~l~~ 149 (224)
T cd06187 80 D-----RVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG-----EPRPVHLFFGARTERDLYDLEGLLA 149 (224)
T ss_pred C-----EEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC-----CCCCEEEEEecCChhhhcChHHHHH
Confidence 7 79999999998543334789999999999999999999988653 2468999999999999998888865
Q ss_pred cCCCCCCCCCCceEEEEEEeCCCC-CCCccccccceee-cccCCCCCCceeeeCCCchh
Q 005553 468 ISGTPTELPNLKLQIEAYVTREKQ-PTTDNSKLIRALW-FKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 468 ~~~~~~~~~~~~l~i~iyvTr~~~-~~~~~~~~~~~~~-~~P~~~~~~~~~v~gp~~~~ 524 (691)
.. ....+++++.+++++++ +..+.+...+.+. ..+ +.+.....+|||+++.
T Consensus 150 ~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~v~vcGp~~~~ 202 (224)
T cd06187 150 LA-----ARHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRDGP-DWADHDIYICGPPAMV 202 (224)
T ss_pred HH-----HhCCCeEEEEEeCCCCCccCCCcccHHHHHHHhcc-ccccCEEEEECCHHHH
Confidence 42 23457888888887643 2233333332221 122 1234567899999953
No 15
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.91 E-value=3.6e-23 Score=213.88 Aligned_cols=205 Identities=18% Similarity=0.230 Sum_probs=156.7
Q ss_pred ccceEEEEEEEEecCCEEEEEEecCCC---CccCCCCEEEEEeCCCC--CceeeeeEeeeCCCCCCCeEEEEEEcC--Cc
Q 005553 303 SRRAVRLVSARMLPGETVELNFSKAPG---LSYNPTSIMFINVPSIS--KLQWHPFTVTSSSNLEPEKLSVVIKGE--GS 375 (691)
Q Consensus 303 ~~~~~~v~s~~~l~~~~~~l~~~~~~~---~~~~pGQ~v~L~~p~~s--~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg 375 (691)
.++.+++.+++.+++++.++++..+.. ..++||||+.|.++..+ ...+|||||+|.|. ++.++|.||.. |.
T Consensus 5 ~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~l~~~ik~~~~G~ 82 (247)
T cd06184 5 GFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPN--GDYYRISVKREPGGL 82 (247)
T ss_pred CcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCC--CCeEEEEEEEcCCCc
Confidence 345678889999999999999987653 57999999999997543 45789999999874 35899999987 88
Q ss_pred hhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCC
Q 005553 376 WSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKN 455 (691)
Q Consensus 376 ~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~ 455 (691)
.|+.|.+.++.|+ ++.|+||||.+..+...+++++|||||+||||++++++++..+. ..++++|+|++|+
T Consensus 83 ~s~~l~~~~~~Gd-----~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~-----~~~~i~l~~~~r~ 152 (247)
T cd06184 83 VSNYLHDNVKVGD-----VLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG-----PGRPVTFIHAARN 152 (247)
T ss_pred chHHHHhcCCCCC-----EEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC-----CCCcEEEEEEcCc
Confidence 9999988788887 79999999997543336789999999999999999999998652 2467999999999
Q ss_pred CCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCC-----CccccccceeecccCCCCCCceeeeCCCchh
Q 005553 456 SSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPT-----TDNSKLIRALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 456 ~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~-----~~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
.+++.+.+++.... ....+++++.+++++.+.. ...+...........+.......+|||++|.
T Consensus 153 ~~~~~~~~~l~~l~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~v~icGp~~m~ 221 (247)
T cd06184 153 SAVHAFRDELEELA-----ARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRELLLPADADFYLCGPVPFM 221 (247)
T ss_pred hhhHHHHHHHHHHH-----hhCCCeEEEEEECCCCcccccccccccCccCHHHHhhccCCCCCEEEEECCHHHH
Confidence 99999888887653 2346899999999875321 1122222221111112234567899999953
No 16
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.91 E-value=1.3e-23 Score=215.11 Aligned_cols=199 Identities=19% Similarity=0.290 Sum_probs=150.7
Q ss_pred EEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHHHhhcCC
Q 005553 310 VSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLYQVLSSP 387 (691)
Q Consensus 310 ~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~l~~g 387 (691)
++++.+++|+.+++++.+..+.++||||++|++|+.+ ..|||||+|.|. +++.++|.||.. |..|+.|++.++.|
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~~~~~vk~~~~G~~s~~l~~~~~~g 78 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLAN-ASGEWEFIIKRKPGGAASNALFDNLEPG 78 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCC-CCCEEEEEEEEcCCCcchHHHhhcCCCC
Confidence 4567889999999998877778999999999998754 679999999875 467899999986 77999999877887
Q ss_pred CCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcc
Q 005553 388 SSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLP 467 (691)
Q Consensus 388 ~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~ 467 (691)
+ ++.|+||||.+.......++++|||||+||||++++++++..... ....+++|+|++|+.+++.+.|++.+
T Consensus 79 ~-----~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~---~~~~~v~l~~~~r~~~~~~~~~el~~ 150 (232)
T cd06190 79 D-----ELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY---LSDRPVDLFYGGRTPSDLCALDELSA 150 (232)
T ss_pred C-----EEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc---CCCCeEEEEEeecCHHHHhhHHHHHH
Confidence 7 789999999985433456899999999999999999999986521 12468999999999999999888876
Q ss_pred cCCCCCCCCCCceEEEEEEeCCCCC-----CCccccccceeec-ccCCCCCCceeeeCCCchh
Q 005553 468 ISGTPTELPNLKLQIEAYVTREKQP-----TTDNSKLIRALWF-KPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 468 ~~~~~~~~~~~~l~i~iyvTr~~~~-----~~~~~~~~~~~~~-~P~~~~~~~~~v~gp~~~~ 524 (691)
.. ....+++++..++++.+. ....+...+.+.- .+.........+|||+++.
T Consensus 151 l~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~~~~~~~~~~vyiCGp~~m~ 208 (232)
T cd06190 151 LV-----ALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLGDRLAEFEFYFAGPPPMV 208 (232)
T ss_pred HH-----HhCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhhccCCccccEEEEECCHHHH
Confidence 53 235678888888876532 1222222211110 1111123566899999854
No 17
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.90 E-value=3.2e-23 Score=210.71 Aligned_cols=193 Identities=17% Similarity=0.276 Sum_probs=148.5
Q ss_pred EEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHHHhhcCC
Q 005553 310 VSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLYQVLSSP 387 (691)
Q Consensus 310 ~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~l~~g 387 (691)
.+++.+++++++++++.++.+.|+||||++|++|.. ..|||||+|.|. +++.++|+||.. |.+|+.|.+.++.|
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~-~~~~~~~~i~~~~~G~~s~~l~~~~~~G 77 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPD-GDNELEFHIRRKPNGAFSGWLGEEARPG 77 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCC-CCCEEEEEEEeccCCccchHHHhccCCC
Confidence 456788999999999987778899999999999863 569999999886 447899999985 77899999877888
Q ss_pred CCCceeEEEEECCCCCCCCCC-CCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhc
Q 005553 388 SSIDRLDVSVEGPYGPVSTHF-LRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLL 466 (691)
Q Consensus 388 ~~~~~~~v~VeGPYG~~~~~~-~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~ 466 (691)
+ ++.|+||||.+.... ...+++++||||+||||+++++++++.+.. .++|.++|++|+.+++.+.+++.
T Consensus 78 ~-----~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~el~ 147 (222)
T cd06194 78 H-----ALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH-----QGEIRLVHGARDPDDLYLHPALL 147 (222)
T ss_pred C-----EEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC-----CccEEEEEecCChhhccCHHHHH
Confidence 7 799999999985432 456899999999999999999999886532 46899999999999999888886
Q ss_pred ccCCCCCCCCCCceEEEEEEeCCCCCCCc--cccccceeecccCCCCCCceeeeCCCchh
Q 005553 467 PISGTPTELPNLKLQIEAYVTREKQPTTD--NSKLIRALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 467 ~~~~~~~~~~~~~l~i~iyvTr~~~~~~~--~~~~~~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
+.. ....+++++.+++++++.... .+...+.. +.+.+.....+|||++|.
T Consensus 148 ~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vyicGp~~m~ 199 (222)
T cd06194 148 WLA-----REHPNFRYIPCVSEGSQGDPRVRAGRIAAHL---PPLTRDDVVYLCGAPSMV 199 (222)
T ss_pred HHH-----HHCCCeEEEEEEccCCCCCcccccchhhhhh---ccccCCCEEEEeCCHHHH
Confidence 552 234578888888886533111 11111111 112334667899999954
No 18
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.90 E-value=2.7e-23 Score=212.68 Aligned_cols=199 Identities=20% Similarity=0.284 Sum_probs=151.8
Q ss_pred EEEEEEEecCCEEEEEEecCCC--CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHHHh
Q 005553 308 RLVSARMLPGETVELNFSKAPG--LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLYQV 383 (691)
Q Consensus 308 ~v~s~~~l~~~~~~l~~~~~~~--~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~ 383 (691)
++++++.+++++.++++..+.. +.++||||+.|+++..+...+|||||+|.+. ++.++|.||.. |..|+.|.+.
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~~G~~s~~l~~~ 79 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVPGGRVSNYLREH 79 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECCCCccchHHHhc
Confidence 5678888999999999986544 4799999999999755555789999999874 57899999986 7799999977
Q ss_pred hcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHH
Q 005553 384 LSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLD 463 (691)
Q Consensus 384 l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d 463 (691)
++.|+ ++.|+||||.+..+....++++|||||+||||++++++++..... .++++++|++|+.+++.+.+
T Consensus 80 ~~~Gd-----~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~ 149 (231)
T cd06191 80 IQPGM-----TVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAP-----ESDFTLIHSARTPADMIFAQ 149 (231)
T ss_pred CCCCC-----EEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCC-----CCCEEEEEecCCHHHHhHHH
Confidence 88887 799999999974333456899999999999999999999876532 46899999999999999888
Q ss_pred hhcccCCCCCCCCCCceEEEEEEeCCCCCCC---ccccccceee--cccCCCCCCceeeeCCCchh
Q 005553 464 LLLPISGTPTELPNLKLQIEAYVTREKQPTT---DNSKLIRALW--FKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 464 ~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~---~~~~~~~~~~--~~P~~~~~~~~~v~gp~~~~ 524 (691)
++.+.. ....+++++.++|+++..+. ..+.....+. ..|.. +.....+|||++|.
T Consensus 150 el~~l~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vyicGp~~mv 209 (231)
T cd06191 150 ELRELA-----DKPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAALIPDR-LEREAFICGPAGMM 209 (231)
T ss_pred HHHHHH-----HhCCCeEEEEEECCCCCCccccCCcccccHHHHHHhCccc-cCCeEEEECCHHHH
Confidence 886552 23568999999998753211 1111111111 11211 23567899999954
No 19
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.90 E-value=3.7e-23 Score=209.45 Aligned_cols=186 Identities=23% Similarity=0.352 Sum_probs=139.7
Q ss_pred CCEEEEEEecCCC-CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhcCCCCCceeEE
Q 005553 317 GETVELNFSKAPG-LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSSPSSIDRLDV 395 (691)
Q Consensus 317 ~~~~~l~~~~~~~-~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~~g~~~~~~~v 395 (691)
.++.++++..+.. ..++||||+.|++|..+..++|||||+|.|. +++.++|.||..|++|+.|.+.++.|+ ++
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~l~l~vk~~G~~t~~l~~~l~~G~-----~v 80 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPD-PDGRLRFTIKALGDYTRRLAERLKPGT-----RV 80 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCC-CCCeEEEEEEeCChHHHHHHHhCCCCC-----EE
Confidence 4567777776554 6799999999999876667899999999875 457999999999999999997788887 78
Q ss_pred EEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCC
Q 005553 396 SVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTEL 475 (691)
Q Consensus 396 ~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~ 475 (691)
.++||||.+..+. .+++++|||||+||||++++++++..+.. .++++++|++|+.+++.+.+++.+...
T Consensus 81 ~i~gP~G~~~~~~-~~~~~vlia~GtGiap~~~~l~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~----- 149 (216)
T cd06198 81 TVEGPYGRFTFDD-RRARQIWIAGGIGITPFLALLEALAARGD-----ARPVTLFYCVRDPEDAVFLDELRALAA----- 149 (216)
T ss_pred EEECCCCCCcccc-cCceEEEEccccCHHHHHHHHHHHHhcCC-----CceEEEEEEECCHHHhhhHHHHHHHHH-----
Confidence 9999999985433 37899999999999999999999886532 468999999999999999888866531
Q ss_pred CCCceEEEEEEeCCCCCCCccccccceeecccCCCCCCceeeeCCCchh
Q 005553 476 PNLKLQIEAYVTREKQPTTDNSKLIRALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 476 ~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
.. +++++...+++.......+.. . ...+. .......+|||++|.
T Consensus 150 ~~-~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~~~~vyicGp~~m~ 193 (216)
T cd06198 150 AA-GVVLHVIDSPSDGRLTLEQLV-R--ALVPD-LADADVWFCGPPGMA 193 (216)
T ss_pred hc-CeEEEEEeCCCCcccchhhhh-h--hcCCC-cCCCeEEEECcHHHH
Confidence 22 677776555433221111110 0 01111 234567899999954
No 20
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.90 E-value=3.6e-23 Score=211.23 Aligned_cols=199 Identities=17% Similarity=0.284 Sum_probs=152.5
Q ss_pred eEEEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHHHh
Q 005553 306 AVRLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLYQV 383 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~ 383 (691)
..++++++.+++|+.++++..++...++||||+.|++|... ..|||||+|.|. +++.++|.||.. |.+|+.|++.
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~ 78 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQ-GDGQLSFHIRKVPGGAFSGWLFGA 78 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCC-CCCEEEEEEEECCCCcchHHHHhc
Confidence 35788899999999999998876678999999999998654 689999999886 467899999985 8899999988
Q ss_pred hcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHH
Q 005553 384 LSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLD 463 (691)
Q Consensus 384 l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d 463 (691)
++.|+ ++.++||||.+... ...++++|||||+||||++++++++.++.. .+++.++|++|+.+++.+.+
T Consensus 79 l~~G~-----~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~~-----~~~i~l~~~~r~~~~~~~~~ 147 (227)
T cd06213 79 DRTGE-----RLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAGT-----KRDVTLLFGARTQRDLYALD 147 (227)
T ss_pred CCCCC-----EEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcCC-----CCcEEEEEeeCCHHHhccHH
Confidence 88887 79999999998532 345799999999999999999999876532 45799999999999998888
Q ss_pred hhcccCCCCCCCCCCceEEEEEEeCCCCC---CCccccccceeecccCCCCCCceeeeCCCchh
Q 005553 464 LLLPISGTPTELPNLKLQIEAYVTREKQP---TTDNSKLIRALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 464 ~l~~~~~~~~~~~~~~l~i~iyvTr~~~~---~~~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
++.+.. .....+++++.+++++.+. ....+...+.+.-.. ...+...+|||++++
T Consensus 148 ~l~~l~----~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~~~~--~~~~~v~~CGp~~~~ 205 (227)
T cd06213 148 EIAAIA----ARWRGRFRFIPVLSEEPADSSWKGARGLVTEHIAEVL--LAATEAYLCGPPAMI 205 (227)
T ss_pred HHHHHH----HhccCCeEEEEEecCCCCCCCccCCcccHHHHHHhhc--cCCCEEEEECCHHHH
Confidence 886543 1224678888888876422 122222111111010 123567899999954
No 21
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.90 E-value=3.4e-23 Score=213.01 Aligned_cols=202 Identities=15% Similarity=0.209 Sum_probs=153.7
Q ss_pred ceEEEEEEEEecCCEEEEEEecCCCC--ccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHH
Q 005553 305 RAVRLVSARMLPGETVELNFSKAPGL--SYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKL 380 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~~~--~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L 380 (691)
...++.+++.+++++.+++++.+... .|+||||+.|++|... +.|||||+|.+. +++.++|.||.. |..|+.|
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~l~l~i~~~~~G~~s~~l 83 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPS-DAGEIELHIRLVPGGIATTYV 83 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCC-CCCEEEEEEEECCCCcchhhH
Confidence 35688899999999999999876654 7999999999998643 679999999885 467899999986 7899999
Q ss_pred HHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchh
Q 005553 381 YQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLT 460 (691)
Q Consensus 381 ~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~ 460 (691)
++.++.|+ ++.|+||+|.+.......++++|||||+||||+++++++++++.. .+++.|+|++|+.+++.
T Consensus 84 ~~~l~~G~-----~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~-----~~~v~l~~~~r~~~~~~ 153 (238)
T cd06211 84 HKQLKEGD-----ELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD-----TRKITLFFGARTRAELY 153 (238)
T ss_pred hhcCCCCC-----EEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC-----CCcEEEEEecCChhhhc
Confidence 87788887 799999999985433345899999999999999999999886532 35799999999999998
Q ss_pred HHHhhcccCCCCCCCCCCceEEEEEEeCCCCCC---Cccccccceee-cccCCCCCCceeeeCCCchh
Q 005553 461 MLDLLLPISGTPTELPNLKLQIEAYVTREKQPT---TDNSKLIRALW-FKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 461 ~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~---~~~~~~~~~~~-~~P~~~~~~~~~v~gp~~~~ 524 (691)
+.+++.+.. ....+++++..++++...+ ...+...+.+. ..+.........+|||+++.
T Consensus 154 ~~~~l~~l~-----~~~~~~~~~~~~s~~~~~~~~~~~~g~v~~~l~~~~~~~~~~~~vyvCGp~~m~ 216 (238)
T cd06211 154 YLDEFEALE-----KDHPNFKYVPALSREPPESNWKGFTGFVHDAAKKHFKNDFRGHKAYLCGPPPMI 216 (238)
T ss_pred cHHHHHHHH-----HhCCCeEEEEEECCCCCCcCcccccCcHHHHHHHhcccccccCEEEEECCHHHH
Confidence 888886542 2345788888888764322 22233222111 11111123567899999954
No 22
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.90 E-value=6.5e-23 Score=208.57 Aligned_cols=147 Identities=20% Similarity=0.379 Sum_probs=121.3
Q ss_pred EEEecCCEEEEEEecCCC---CccCCCCEEEEEeCCC----------------CCceeeeeEeeeCCCCC--CCeEEEEE
Q 005553 312 ARMLPGETVELNFSKAPG---LSYNPTSIMFINVPSI----------------SKLQWHPFTVTSSSNLE--PEKLSVVI 370 (691)
Q Consensus 312 ~~~l~~~~~~l~~~~~~~---~~~~pGQ~v~L~~p~~----------------s~~q~HPFTIas~p~~~--~~~l~l~I 370 (691)
.+.+++|+.++++..+.+ ..|+||||+.|++|.. +...+|||||+|.|+++ ++.++|.|
T Consensus 3 ~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~v 82 (220)
T cd06197 3 SEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITV 82 (220)
T ss_pred ceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEE
Confidence 467889999999988766 7899999999999752 11346889999998643 37999999
Q ss_pred EcCCchhHHHHHhhcC----CCCCceeEEEEECCCCCCCCCC---CCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCC
Q 005553 371 KGEGSWSKKLYQVLSS----PSSIDRLDVSVEGPYGPVSTHF---LRHDTLVMVSGGSGITPFISVIRELMYASTVTKCK 443 (691)
Q Consensus 371 K~~Gg~T~~L~~~l~~----g~~~~~~~v~VeGPYG~~~~~~---~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~ 443 (691)
|..|++|+.|++.... |+ ++.++||||.+..+. ..+++++|||||+||||++++++++++..+ .
T Consensus 83 k~~G~~T~~L~~~~~~~~~~G~-----~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~----~ 153 (220)
T cd06197 83 RKKGPVTGFLFQVARRLREQGL-----EVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRN----T 153 (220)
T ss_pred EeCCCCCHHHHHhhhcccCCCc-----eEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhccc----C
Confidence 9999999999987653 44 799999999985332 357899999999999999999999986432 2
Q ss_pred CCeEEEEEEeCCCCchhHHHhhcc
Q 005553 444 TPQVILICSFKNSSDLTMLDLLLP 467 (691)
Q Consensus 444 ~~~V~Liw~vR~~~~l~~~d~l~~ 467 (691)
.++|+|+|++|+.+++.+.|++.+
T Consensus 154 ~~~v~l~~~~r~~~~~~~~~el~~ 177 (220)
T cd06197 154 TWDITLLWSLREDDLPLVMDTLVR 177 (220)
T ss_pred CCcEEEEEEecchhhHHHHHHHHh
Confidence 468999999999999999999854
No 23
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.90 E-value=5.3e-23 Score=210.61 Aligned_cols=200 Identities=18% Similarity=0.313 Sum_probs=152.2
Q ss_pred eEEEEEEEEecCCEEEEEEecCC--CCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHH
Q 005553 306 AVRLVSARMLPGETVELNFSKAP--GLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLY 381 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~~--~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~ 381 (691)
.+++.+++.+++++.++++..++ .++++||||+.|++|+.. ++|||||+|.|. +++.++|+||.. |.+|+.|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~l~l~vk~~~~G~~s~~l~ 78 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPA-DPGRLEFIIKKYPGGLFSSFLD 78 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCC-CCCEEEEEEEECCCCchhhHHh
Confidence 45788899999999999987543 467999999999998654 789999999885 457899999986 77899998
Q ss_pred HhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhH
Q 005553 382 QVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTM 461 (691)
Q Consensus 382 ~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~ 461 (691)
+.++.|+ ++.++||||.+......+++++|||||+||||++++++++..... .++++|+|++|+.+++.+
T Consensus 79 ~~l~~G~-----~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~-----~~~v~l~~~~r~~~~~~~ 148 (232)
T cd06212 79 DGLAVGD-----PVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGS-----DRPVRFFYGARTARDLFY 148 (232)
T ss_pred hcCCCCC-----EEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCC-----CCcEEEEEeccchHHhcc
Confidence 8788887 799999999985433457899999999999999999999986532 457999999999999988
Q ss_pred HHhhcccCCCCCCCCCCceEEEEEEeCCCCCCC---ccccccceee-cccCCCCCCceeeeCCCchh
Q 005553 462 LDLLLPISGTPTELPNLKLQIEAYVTREKQPTT---DNSKLIRALW-FKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 462 ~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~---~~~~~~~~~~-~~P~~~~~~~~~v~gp~~~~ 524 (691)
.+++.... ....+++++..++++...+. ..+...+.+. ..+.. ......+|||+++.
T Consensus 149 ~~~l~~l~-----~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~v~~CGp~~~~ 209 (232)
T cd06212 149 LEEIAALG-----EKIPDFTFIPALSESPDDEGWSGETGLVTEVVQRNEATL-AGCDVYLCGPPPMI 209 (232)
T ss_pred HHHHHHHH-----HhCCCEEEEEEECCCCCCCCCcCCcccHHHHHHhhccCc-cCCEEEEECCHHHH
Confidence 88886543 23457888888887643211 1222221111 01221 23567899999953
No 24
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.90 E-value=5.9e-23 Score=208.04 Aligned_cols=196 Identities=20% Similarity=0.335 Sum_probs=151.0
Q ss_pred EEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHHHhhcCCCC
Q 005553 312 ARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLYQVLSSPSS 389 (691)
Q Consensus 312 ~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~l~~g~~ 389 (691)
++.+++++.++++..+...+++||||+.|.+|..+..++|||||+|.|. +++.++|.||.. |.+|+.|.+ ++.|+
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~~~l~vk~~~~G~~s~~l~~-~~~G~- 79 (223)
T cd00322 3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPD-EEGELELTVKIVPGGPFSAWLHD-LKPGD- 79 (223)
T ss_pred eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCC-CCCeEEEEEEEeCCCchhhHHhc-CCCCC-
Confidence 4667899999999887767899999999999976567899999999885 457999999998 999999986 47776
Q ss_pred CceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccC
Q 005553 390 IDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPIS 469 (691)
Q Consensus 390 ~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~ 469 (691)
++.++||+|.+......+++++|||||+||||++++++++.... ..++++++|++|+.+++.+.+++.+..
T Consensus 80 ----~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~-----~~~~v~l~~~~r~~~~~~~~~el~~l~ 150 (223)
T cd00322 80 ----EVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK-----PGGEITLLYGARTPADLLFLDELEELA 150 (223)
T ss_pred ----EEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC-----CCCcEEEEEecCCHHHhhHHHHHHHHH
Confidence 79999999998544456789999999999999999999998653 246899999999999999998887653
Q ss_pred CCCCCCCCCceEEEEEEeCCCCCCC-cccccc--ceeecccCCCCCCceeeeCCCchh
Q 005553 470 GTPTELPNLKLQIEAYVTREKQPTT-DNSKLI--RALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 470 ~~~~~~~~~~l~i~iyvTr~~~~~~-~~~~~~--~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
....+++++.++++++.... ..+... ................+|||++|.
T Consensus 151 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~~m~ 203 (223)
T cd00322 151 -----KEGPNFRLVLALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPPAMA 203 (223)
T ss_pred -----HhCCCeEEEEEecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECCHHHH
Confidence 24567888888888653321 111111 011111122334667899999953
No 25
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.90 E-value=5.2e-23 Score=211.95 Aligned_cols=199 Identities=18% Similarity=0.295 Sum_probs=151.9
Q ss_pred EEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCC-CCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHHHhhc
Q 005553 309 LVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSI-SKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLYQVLS 385 (691)
Q Consensus 309 v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~-s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~l~ 385 (691)
+++++.+++++.+++++.+...+++||||+.|++|.. +...+|||||+|.+. ++.++|.||.. |..|+.|. .++
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~--~~~i~~~i~~~~~G~~s~~l~-~l~ 78 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPY--EENLEFYIILVPDGPLTPRLF-KLK 78 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCC--CCeEEEEEEEecCCCCchHHh-cCC
Confidence 5677889999999999887667899999999999875 566889999999875 37899999964 88999997 488
Q ss_pred CCCCCceeEEEEE-CCCCCCCCCCC-CCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHH
Q 005553 386 SPSSIDRLDVSVE-GPYGPVSTHFL-RHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLD 463 (691)
Q Consensus 386 ~g~~~~~~~v~Ve-GPYG~~~~~~~-~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d 463 (691)
.|+ ++.+. ||+|.+..+.. ..++++|||||+||||++++++++....+ .++++|+|++|+.+++.+.|
T Consensus 79 ~Gd-----~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~-----~~~v~l~~~~r~~~d~~~~~ 148 (241)
T cd06195 79 PGD-----TIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWER-----FDKIVLVHGVRYAEELAYQD 148 (241)
T ss_pred CCC-----EEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCC-----CCcEEEEEccCCHHHhhhHH
Confidence 887 79999 99999753333 46899999999999999999999875432 46899999999999999989
Q ss_pred hhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceee--------cccCCCCCCceeeeCCCchh
Q 005553 464 LLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALW--------FKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 464 ~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~--------~~P~~~~~~~~~v~gp~~~~ 524 (691)
++.+... ....+++++.++|++++.....+...+.+. -.+.+.......+|||++|.
T Consensus 149 el~~l~~----~~~~~~~~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~ 213 (241)
T cd06195 149 EIEALAK----QYNGKFRYVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMI 213 (241)
T ss_pred HHHHHHh----hcCCCEEEEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHH
Confidence 8876531 124689999999987654222222221110 01111233566899999943
No 26
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.90 E-value=1.3e-22 Score=214.78 Aligned_cols=169 Identities=21% Similarity=0.305 Sum_probs=133.9
Q ss_pred ceEEEEEEEEecCCEEEEEE--ecC---CCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHH
Q 005553 305 RAVRLVSARMLPGETVELNF--SKA---PGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKK 379 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~--~~~---~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~ 379 (691)
...++++++.+++|+..+++ ..+ +.++++||||+.|++|..+ .||||++|.|. +++.++|.||..|.+|+.
T Consensus 6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~-~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPT-RKGFFELCIRRAGRVTTV 81 (289)
T ss_pred eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCC-CCCEEEEEEEeCChHHHH
Confidence 45788999999988554444 433 2367999999999998643 48999999885 467899999999999999
Q ss_pred HHHhhcCCCCCceeEEEEECCCCCCCC-CCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCc
Q 005553 380 LYQVLSSPSSIDRLDVSVEGPYGPVST-HFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSD 458 (691)
Q Consensus 380 L~~~l~~g~~~~~~~v~VeGPYG~~~~-~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~ 458 (691)
|.+ ++.|+ ++.++||||.... +....++++|||||+||||+++++++++.... ..++|+|+|++|+.+|
T Consensus 82 L~~-l~~Gd-----~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~----~~~~v~l~~~~r~~~d 151 (289)
T PRK08345 82 IHR-LKEGD-----IVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW----KYGNITLIYGAKYYED 151 (289)
T ss_pred HHh-CCCCC-----EEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCC----CCCcEEEEEecCCHHH
Confidence 964 88887 7999999998422 22234689999999999999999999876531 2368999999999999
Q ss_pred hhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC
Q 005553 459 LTMLDLLLPISGTPTELPNLKLQIEAYVTREKQP 492 (691)
Q Consensus 459 l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~ 492 (691)
+.+.|++.+.. ....+++++.+++++++.
T Consensus 152 ~~~~deL~~l~-----~~~~~~~~~~~~s~~~~~ 180 (289)
T PRK08345 152 LLFYDELIKDL-----AEAENVKIIQSVTRDPEW 180 (289)
T ss_pred hhHHHHHHHHH-----hcCCCEEEEEEecCCCCC
Confidence 99999987652 245689999999986543
No 27
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.89 E-value=1.1e-22 Score=220.02 Aligned_cols=201 Identities=18% Similarity=0.288 Sum_probs=152.8
Q ss_pred ceEEEEEEEEecCCEEEEEEecC---CCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHH
Q 005553 305 RAVRLVSARMLPGETVELNFSKA---PGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKK 379 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~---~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~ 379 (691)
..+++++++.+++|+.++++..+ +.+.|+||||+.|++|+.. .+||||++|.|. +++.++|+||.. |..|+.
T Consensus 107 ~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySias~p~-~~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 107 ISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTD--DWRSYSFANRPN-ATNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred eeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCC--ceeecccCCCCC-CCCeEEEEEEECCCCcchhh
Confidence 45788899999999999999865 4567999999999998643 589999999885 568999999984 668899
Q ss_pred HHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCch
Q 005553 380 LYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDL 459 (691)
Q Consensus 380 L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l 459 (691)
|++.++.|+ ++.|+||||.+..+ ...++++|||||+||||++++++++..... .++++|+|++|+.+++
T Consensus 184 L~~~l~~G~-----~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~~-----~~~v~l~~g~r~~~dl 252 (340)
T PRK11872 184 LRERCQVGD-----EILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQGC-----SPPVHLYYGVRHAADL 252 (340)
T ss_pred HhhCCCCCC-----EEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcCC-----CCcEEEEEecCChHHh
Confidence 988888887 79999999998533 345799999999999999999999986532 3579999999999999
Q ss_pred hHHHhhcccCCCCCCCCCCceEEEEEEeCCCC-CCCccccccceeecccCCCCCCceeeeCCCchh
Q 005553 460 TMLDLLLPISGTPTELPNLKLQIEAYVTREKQ-PTTDNSKLIRALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 460 ~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~-~~~~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
.+.+++.++. ....+++++..++++++ +....+...+.+.-.-.........+|||++|.
T Consensus 253 ~~~~el~~~~-----~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~l~~~~~~vy~CGp~~mv 313 (340)
T PRK11872 253 CELQRLAAYA-----ERLPNFRYHPVVSKASADWQGKRGYIHEHFDKAQLRDQAFDMYLCGPPPMV 313 (340)
T ss_pred ccHHHHHHHH-----HHCCCcEEEEEEeCCCCcCCCceeeccHHHHHhhcCcCCCEEEEeCCHHHH
Confidence 9998887652 23457899888887643 223333322211100001122346899999954
No 28
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.89 E-value=9e-23 Score=220.82 Aligned_cols=200 Identities=15% Similarity=0.214 Sum_probs=152.3
Q ss_pred ceEEEEEEEEecCCEEEEEEecCC--CCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHH
Q 005553 305 RAVRLVSARMLPGETVELNFSKAP--GLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKL 380 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~--~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L 380 (691)
..+++++++.+++|+.++++..++ .+.|+||||+.|.+|.. ++|||||+|.|. +++.++|+||.. |.+|+.|
T Consensus 103 ~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~-~~~~l~~~ik~~~~G~~s~~l 178 (339)
T PRK07609 103 LPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPH-SGGPLELHIRHMPGGVFTDHV 178 (339)
T ss_pred EEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCC-CCCEEEEEEEecCCCccHHHH
Confidence 457888899999999999998653 46799999999999853 579999999985 457899999974 7889999
Q ss_pred HHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchh
Q 005553 381 YQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLT 460 (691)
Q Consensus 381 ~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~ 460 (691)
++.++.|+ ++.++||||.+..+....++++|||||+||||+++++++++.... .++|+|+|++|+.+++.
T Consensus 179 ~~~l~~G~-----~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~-----~~~i~l~~g~r~~~dl~ 248 (339)
T PRK07609 179 FGALKERD-----ILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGI-----QRPVTLYWGARRPEDLY 248 (339)
T ss_pred HHhccCCC-----EEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCC-----CCcEEEEEecCChHHhc
Confidence 98889887 799999999985433456899999999999999999999986532 45799999999999987
Q ss_pred HHHhhcccCCCCCCCCCCceEEEEEEeCCCCC---CCccccccceeec-ccCCCCCCceeeeCCCchh
Q 005553 461 MLDLLLPISGTPTELPNLKLQIEAYVTREKQP---TTDNSKLIRALWF-KPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 461 ~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~---~~~~~~~~~~~~~-~P~~~~~~~~~v~gp~~~~ 524 (691)
+.+++.++. .+..+++++..++++..+ ....+...+.+.- .+.. ......+|||++|.
T Consensus 249 ~~e~l~~~~-----~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~~~~-~~~~vy~CGp~~m~ 310 (339)
T PRK07609 249 LSALAEQWA-----EELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLEDFPDL-SGHQVYACGSPVMV 310 (339)
T ss_pred cHHHHHHHH-----HhCCCeEEEEEecCCCCCCCccCccCcHHHHHHhhcccc-cCCEEEEECCHHHH
Confidence 666654432 234578888889985322 2233333332211 1222 23567899999953
No 29
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.89 E-value=1.5e-22 Score=205.21 Aligned_cols=193 Identities=26% Similarity=0.385 Sum_probs=146.0
Q ss_pred eEEEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCC-CceeeeeEeeeCCCCCCCeEEEEEEcC---CchhHHHH
Q 005553 306 AVRLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSIS-KLQWHPFTVTSSSNLEPEKLSVVIKGE---GSWSKKLY 381 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s-~~q~HPFTIas~p~~~~~~l~l~IK~~---Gg~T~~L~ 381 (691)
.+++++++.+++|+.+++++.++.+.|+||||+.|.++..+ ..++|||||+|.|. ++.++|.||.. |+.|+.|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~~~~g~~s~~l~ 79 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSYPDHDGVTEQLG 79 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEcCCCCcHhHHHH
Confidence 35788999999999999999888888999999999997644 34789999999874 47899999984 77899886
Q ss_pred HhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhH
Q 005553 382 QVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTM 461 (691)
Q Consensus 382 ~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~ 461 (691)
+ ++.|+ ++.++||||.+.. .++++|||||+||||++++++++....+ .++++|+|++|+.+++.+
T Consensus 80 ~-l~~G~-----~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~~-----~~~v~l~~~~r~~~~~~~ 144 (218)
T cd06196 80 R-LQPGD-----TLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKGK-----LEGNTLIFANKTEKDIIL 144 (218)
T ss_pred h-CCCCC-----EEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCCC-----CceEEEEEecCCHHHHhh
Confidence 5 78887 7999999999732 2679999999999999999999986432 457999999999999999
Q ss_pred HHhhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceeecccCCCCCCceeeeCCCchh
Q 005553 462 LDLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 462 ~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
.+++.+. .+++++.++|++..+....+...+...-.-.+.......+|||+++.
T Consensus 145 ~~el~~l---------~~~~~~~~~s~~~~~~~~~g~~~~~~l~~~~~~~~~~vyiCGp~~m~ 198 (218)
T cd06196 145 KDELEKM---------LGLKFINVVTDEKDPGYAHGRIDKAFLKQHVTDFNQHFYVCGPPPME 198 (218)
T ss_pred HHHHHHh---------hcceEEEEEcCCCCCCeeeeEECHHHHHHhcCCCCCEEEEECCHHHH
Confidence 8888653 13566677787644322233332222111001112456899999843
No 30
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.89 E-value=2.9e-22 Score=208.13 Aligned_cols=194 Identities=18% Similarity=0.293 Sum_probs=144.1
Q ss_pred EEEEEecCCEEEEEEecCC----CCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhc
Q 005553 310 VSARMLPGETVELNFSKAP----GLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLS 385 (691)
Q Consensus 310 ~s~~~l~~~~~~l~~~~~~----~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~ 385 (691)
.+++.+++++.+++++.++ ..+|+||||+.|++|..+ .||||++|.|. +++.++|.||..|.+|+.|.+ ++
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~-~~~~l~~~Ik~~G~~S~~L~~-l~ 76 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPT-RRGPLELTIRRVGRVTEALHE-LK 76 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCC-CCCeEEEEEEeCChhhHHHHc-CC
Confidence 4567788887777666543 378999999999998654 39999999885 468999999999999999974 77
Q ss_pred CCCCCceeEEEEECCCCCCCCCCC-CCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHh
Q 005553 386 SPSSIDRLDVSVEGPYGPVSTHFL-RHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDL 464 (691)
Q Consensus 386 ~g~~~~~~~v~VeGPYG~~~~~~~-~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~ 464 (691)
.|+ ++.++||||....... ..++++|||||+||||+++++++++++.+ ..++++|+|++|+.+++.+.|+
T Consensus 77 ~G~-----~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~----~~~~i~Li~~~r~~~~~~~~~~ 147 (253)
T cd06221 77 PGD-----TVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE----DYGKVTLLYGARTPEDLLFKEE 147 (253)
T ss_pred CCC-----EEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc----cCCcEEEEEecCChHHcchHHH
Confidence 777 7999999999532222 57899999999999999999999987532 1468999999999999999898
Q ss_pred hcccCCCCCCCCCCceEEEEEEeCCCCC-CCccccccceee-cccCCCCCCceeeeCCCchh
Q 005553 465 LLPISGTPTELPNLKLQIEAYVTREKQP-TTDNSKLIRALW-FKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 465 l~~~~~~~~~~~~~~l~i~iyvTr~~~~-~~~~~~~~~~~~-~~P~~~~~~~~~v~gp~~~~ 524 (691)
+.+.. .+ .+++++.+++++.+. ....+...+.+. ..+.+ ......+|||+++.
T Consensus 148 L~~l~-----~~-~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~~~~-~~~~vyicGp~~mv 202 (253)
T cd06221 148 LKEWA-----KR-SDVEVILTVDRAEEGWTGNVGLVTDLLPELTLDP-DNTVAIVCGPPIMM 202 (253)
T ss_pred HHHHH-----hc-CCeEEEEEeCCCCCCccCCccccchhHHhcCCCc-CCcEEEEECCHHHH
Confidence 87653 23 578888888865432 112222222111 11212 33566899999953
No 31
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.89 E-value=3.9e-22 Score=215.24 Aligned_cols=202 Identities=14% Similarity=0.196 Sum_probs=152.3
Q ss_pred ceEEEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHHH
Q 005553 305 RAVRLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLYQ 382 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~ 382 (691)
...++.+++.+++++..+++..++...|+||||+.|.+|.. ....|||||+|.|. +++.++|.||.. |..|+.|++
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~-~~~~l~i~Vk~~~~G~~S~~L~~ 87 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPG-VSEFITLTVRRIDDGVGSQWLTR 87 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCC-CCCcEEEEEEEcCCCcchhHHHh
Confidence 35678889999999999999877677899999999999853 23579999999885 457899999986 778999998
Q ss_pred hhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHH
Q 005553 383 VLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTML 462 (691)
Q Consensus 383 ~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~ 462 (691)
.++.|+ ++.+.||+|.+..+....++++|||||+||||+++++++++.... .++++|+|++|+.+++.+.
T Consensus 88 ~l~~Gd-----~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~-----~~~v~l~y~~r~~~~~~~~ 157 (332)
T PRK10684 88 DVKRGD-----YLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP-----QADVQVIFNVRTPQDVIFA 157 (332)
T ss_pred cCCCCC-----EEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC-----CCCEEEEEeCCChHHhhhH
Confidence 899988 799999999985433456789999999999999999999876432 3589999999999999999
Q ss_pred HhhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceeec--ccCCCCCCceeeeCCCchh
Q 005553 463 DLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALWF--KPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 463 d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~--~P~~~~~~~~~v~gp~~~~ 524 (691)
+++.+.. ....+++++...+++.......+...+...- -|.+. .....+|||++|+
T Consensus 158 ~el~~l~-----~~~~~~~~~~~~~~~~~~~~~~grl~~~~l~~~~~~~~-~~~vyiCGP~~m~ 215 (332)
T PRK10684 158 DEWRQLK-----QRYPQLNLTLVAENNATEGFIAGRLTRELLQQAVPDLA-SRTVMTCGPAPYM 215 (332)
T ss_pred HHHHHHH-----HHCCCeEEEEEeccCCCCCccccccCHHHHHHhccccc-CCEEEEECCHHHH
Confidence 9987643 2345677776666532211122333222211 12222 3456899999954
No 32
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.88 E-value=2.4e-22 Score=212.09 Aligned_cols=203 Identities=14% Similarity=0.225 Sum_probs=151.5
Q ss_pred ceEEEEEEEEecCCEEEEEEecCCC--CccCCCCEEEEEeCCC-----------------------------CCceeeee
Q 005553 305 RAVRLVSARMLPGETVELNFSKAPG--LSYNPTSIMFINVPSI-----------------------------SKLQWHPF 353 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~~--~~~~pGQ~v~L~~p~~-----------------------------s~~q~HPF 353 (691)
...++++++.+++|+.+++++.+.. ..|+||||+.|.+|.. +....|||
T Consensus 10 ~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 89 (283)
T cd06188 10 WECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAY 89 (283)
T ss_pred EEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCcccccc
Confidence 3567888899999999999988765 6799999999999753 12235999
Q ss_pred EeeeCCCCCCCeEEEEEEc-----------CCchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCC
Q 005553 354 TVTSSSNLEPEKLSVVIKG-----------EGSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSG 422 (691)
Q Consensus 354 TIas~p~~~~~~l~l~IK~-----------~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~G 422 (691)
||+|.|. +++.++|.||. .|..|+.|.+ ++.|+ ++.+.||+|.+... ...++++|||||+|
T Consensus 90 Sias~p~-~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~-l~~Gd-----~v~i~gP~G~f~l~-~~~~~~vlIAgGtG 161 (283)
T cd06188 90 SLANYPA-EEGELKLNVRIATPPPGNSDIPPGIGSSYIFN-LKPGD-----KVTASGPFGEFFIK-DTDREMVFIGGGAG 161 (283)
T ss_pred CcCCCCC-CCCeEEEEEEEeccCCccCCCCCceehhHHhc-CCCCC-----EEEEECcccccccc-CCCCcEEEEEeccc
Confidence 9999986 56789999996 5778999987 88887 79999999998543 35679999999999
Q ss_pred cccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC---CCccccc
Q 005553 423 ITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQP---TTDNSKL 499 (691)
Q Consensus 423 ITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~---~~~~~~~ 499 (691)
|||+++++++++.... ..++++|+|++|+.+++.+.+++.+.. ....+++++..+|++... ....+..
T Consensus 162 ItP~~s~l~~~~~~~~----~~~~v~l~~g~r~~~d~~~~~el~~l~-----~~~~~~~~~~~~s~~~~~~~~~~~~G~v 232 (283)
T cd06188 162 MAPLRSHIFHLLKTLK----SKRKISFWYGARSLKELFYQEEFEALE-----KEFPNFKYHPVLSEPQPEDNWDGYTGFI 232 (283)
T ss_pred HhHHHHHHHHHHhcCC----CCceEEEEEecCCHHHhhHHHHHHHHH-----HHCCCeEEEEEECCCCccCCCCCcceee
Confidence 9999999999876532 136899999999999999988886553 234578888888876421 1223333
Q ss_pred cceeec---ccC-CCCCCceeeeCCCchh
Q 005553 500 IRALWF---KPL-ATDAPISSVLGPNRWL 524 (691)
Q Consensus 500 ~~~~~~---~P~-~~~~~~~~v~gp~~~~ 524 (691)
.+.+.- ... ...+....+|||++|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~vyiCGP~~m~ 261 (283)
T cd06188 233 HQVLLENYLKKHPAPEDIEFYLCGPPPMN 261 (283)
T ss_pred cHHHHHHHhccCCCCCCeEEEEECCHHHH
Confidence 322211 111 1123456799999954
No 33
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.88 E-value=5e-22 Score=203.13 Aligned_cols=202 Identities=18% Similarity=0.310 Sum_probs=151.0
Q ss_pred EEEEEEEecCCEEEEEEecCCC---CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHHH
Q 005553 308 RLVSARMLPGETVELNFSKAPG---LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLYQ 382 (691)
Q Consensus 308 ~v~s~~~l~~~~~~l~~~~~~~---~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~ 382 (691)
++.+++.+++++.++++..++. ..++||||+.|++|..+....||||++|.+. +++.++|+||.. |..|+.|.+
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~-~~~~~~~~v~~~~~G~~s~~l~~ 80 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDD-DKGYFDLLIKIYPGGKMSQYLHS 80 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCC-cCCEEEEEEEECCCCcchhHHhc
Confidence 5778888999999999987653 6799999999999976666889999999875 456899999985 778888874
Q ss_pred hhcCCCCCceeEEEEECCCCCCCCCCCCC-CEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhH
Q 005553 383 VLSSPSSIDRLDVSVEGPYGPVSTHFLRH-DTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTM 461 (691)
Q Consensus 383 ~l~~g~~~~~~~v~VeGPYG~~~~~~~~~-~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~ 461 (691)
++.|+ ++.++||||.+....... ++++|||||+||||+++++++++.+.+ ..++|+++|++|+.+++.+
T Consensus 81 -~~~G~-----~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~----~~~~i~l~~~~r~~~~~~~ 150 (234)
T cd06183 81 -LKPGD-----TVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE----DKTKISLLYANRTEEDILL 150 (234)
T ss_pred -CCCCC-----EEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC----cCcEEEEEEecCCHHHhhh
Confidence 77777 799999999975333333 899999999999999999999986531 2468999999999999988
Q ss_pred HHhhcccCCCCCCCCCCceEEEEEEeCCCCC-CCccccccceeec--ccC-CCCCCceeeeCCCchh
Q 005553 462 LDLLLPISGTPTELPNLKLQIEAYVTREKQP-TTDNSKLIRALWF--KPL-ATDAPISSVLGPNRWL 524 (691)
Q Consensus 462 ~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~-~~~~~~~~~~~~~--~P~-~~~~~~~~v~gp~~~~ 524 (691)
.+++.+... ....+++++.++|++++. ....+...+...- -+. +.......+|||+++.
T Consensus 151 ~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~ 213 (234)
T cd06183 151 REELDELAK----KHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMI 213 (234)
T ss_pred HHHHHHHHH----hCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHH
Confidence 888876531 123678888888876432 2222332222111 111 1234567899999954
No 34
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.88 E-value=1.3e-21 Score=201.19 Aligned_cols=203 Identities=19% Similarity=0.286 Sum_probs=153.0
Q ss_pred eEEEEEEEEecCCEEEEEEecCCC----CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHH
Q 005553 306 AVRLVSARMLPGETVELNFSKAPG----LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKK 379 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~~~----~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~ 379 (691)
.+++++++.+++++.+++++.+.. ..++||||+.|++|..+..++||||++|.++ ++.++|.||.. |..|..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~--~~~l~~~i~~~~~G~~s~~ 80 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPG--DDELRITVKRVPGGRFSNW 80 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCC--CCcEEEEEEEcCCCccchh
Confidence 467889999999999999988654 4799999999999865556789999999875 34899999985 778999
Q ss_pred HHHhhcCCCCCceeEEEEECCCCCCCCCCC-CCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCc
Q 005553 380 LYQVLSSPSSIDRLDVSVEGPYGPVSTHFL-RHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSD 458 (691)
Q Consensus 380 L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~-~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~ 458 (691)
|.+.++.|+ ++.+.||+|.+..... .+++++|||||+||||++++++++..... .++++++|++|+.++
T Consensus 81 l~~~~~~G~-----~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~-----~~~v~l~~~~r~~~~ 150 (241)
T cd06214 81 ANDELKAGD-----TLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP-----ASRVTLVYGNRTEAS 150 (241)
T ss_pred HHhccCCCC-----EEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC-----CCcEEEEEEeCCHHH
Confidence 987788887 7899999999854333 47899999999999999999999886532 458999999999999
Q ss_pred hhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC-CCccccccceee---cc-c-CCCCCCceeeeCCCchh
Q 005553 459 LTMLDLLLPISGTPTELPNLKLQIEAYVTREKQP-TTDNSKLIRALW---FK-P-LATDAPISSVLGPNRWL 524 (691)
Q Consensus 459 l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~-~~~~~~~~~~~~---~~-P-~~~~~~~~~v~gp~~~~ 524 (691)
+.+.+++.+.. +....+++++.++|+++.. ....+...+... .. . .+.......+|||++++
T Consensus 151 ~~~~~~l~~l~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv 218 (241)
T cd06214 151 VIFREELADLK----ARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMM 218 (241)
T ss_pred hhHHHHHHHHH----HhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHH
Confidence 98888886542 1233478888888875432 122233222211 00 0 11234566899999954
No 35
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.88 E-value=1.3e-21 Score=202.57 Aligned_cols=203 Identities=15% Similarity=0.214 Sum_probs=148.8
Q ss_pred cceEEEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHH
Q 005553 304 RRAVRLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLY 381 (691)
Q Consensus 304 ~~~~~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~ 381 (691)
+..+++.+++.+++++.++++..+. ..|+||||+.|.++..+....|||||+|.|. ++.++++||.. |..|+.|.
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~~~G~~S~~L~ 80 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTVPEGKLSPRLA 80 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEeCCCCcChHHH
Confidence 3467888999999999999998653 3699999999998643444579999999874 45899999985 88999997
Q ss_pred HhhcCCCCCceeEEEEECCCCCC-CCCCC-CCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCch
Q 005553 382 QVLSSPSSIDRLDVSVEGPYGPV-STHFL-RHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDL 459 (691)
Q Consensus 382 ~~l~~g~~~~~~~v~VeGPYG~~-~~~~~-~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l 459 (691)
.++.|+ ++.+.||+|.. ..+.. ..++++|||||+||||++++++++..... .++++|+|++|+.+|+
T Consensus 81 -~l~~Gd-----~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~-----~~~v~l~~g~r~~~d~ 149 (248)
T PRK10926 81 -ALKPGD-----EVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLER-----FKNLVLVHAARYAADL 149 (248)
T ss_pred -hCCCCC-----EEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCC-----CCcEEEEEeCCcHHHH
Confidence 488888 79999998543 22211 34799999999999999999999864432 4579999999999999
Q ss_pred hHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCCCcccccccee----e----cccCCCCCCceeeeCCCchh
Q 005553 460 TMLDLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRAL----W----FKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 460 ~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~----~----~~P~~~~~~~~~v~gp~~~~ 524 (691)
.+.+++.+.. +..+.+++++..+++++.+....+...+.+ . ..+...+.....+|||++|.
T Consensus 150 ~~~~el~~l~----~~~~~~~~v~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv 218 (248)
T PRK10926 150 SYLPLMQELE----QRYEGKLRIQTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMV 218 (248)
T ss_pred HHHHHHHHHH----HhCcCCEEEEEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHH
Confidence 9999886542 112357889989998654332233322111 0 01111234567999999954
No 36
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.88 E-value=1.5e-21 Score=215.83 Aligned_cols=204 Identities=15% Similarity=0.203 Sum_probs=153.4
Q ss_pred cceEEEEEEEEecCCEEEEEEecCC---CCccCCCCEEEEEeCCCC--CceeeeeEeeeCCCCCCCeEEEEEEcC--Cch
Q 005553 304 RRAVRLVSARMLPGETVELNFSKAP---GLSYNPTSIMFINVPSIS--KLQWHPFTVTSSSNLEPEKLSVVIKGE--GSW 376 (691)
Q Consensus 304 ~~~~~v~s~~~l~~~~~~l~~~~~~---~~~~~pGQ~v~L~~p~~s--~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~ 376 (691)
++.+++++++.+++++..+++..+. ...++||||+.|+++..+ ..++|||||+|.|. ++.++|.||.. |..
T Consensus 154 ~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~~~G~~ 231 (399)
T PRK13289 154 WRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKREAGGKV 231 (399)
T ss_pred cEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEECCCCee
Confidence 3567899999999999999998653 257999999999986432 33579999999874 46899999987 889
Q ss_pred hHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCC
Q 005553 377 SKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNS 456 (691)
Q Consensus 377 T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~ 456 (691)
|..|.+.++.|+ ++.+.||||.+..+....++++|||||+||||++|++++++.+.. .++++|+|++|+.
T Consensus 232 S~~L~~~l~~Gd-----~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~-----~~~v~l~~~~r~~ 301 (399)
T PRK13289 232 SNYLHDHVNVGD-----VLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQP-----KRPVHFIHAARNG 301 (399)
T ss_pred hHHHhhcCCCCC-----EEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC-----CCCEEEEEEeCCh
Confidence 999998889988 799999999985433356899999999999999999999876532 4689999999999
Q ss_pred CchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCC--Cc----cccccceeecccCCCCCCceeeeCCCchh
Q 005553 457 SDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPT--TD----NSKLIRALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 457 ~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~--~~----~~~~~~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
+++.+.+++.+.. ....+++++.+++++...+ .. .+...+...-.-.+.......+|||+++.
T Consensus 302 ~~~~~~~eL~~l~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~~~~~~~~~vyiCGp~~m~ 370 (399)
T PRK13289 302 GVHAFRDEVEALA-----ARHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEAWLPDPDADFYFCGPVPFM 370 (399)
T ss_pred hhchHHHHHHHHH-----HhCCCcEEEEEECCCccccccCCcccccCcccHHHHHhhCCCCCCEEEEECCHHHH
Confidence 9999988886653 2345788888888764322 11 12222211111011123556899999853
No 37
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.87 E-value=3.1e-21 Score=200.09 Aligned_cols=147 Identities=16% Similarity=0.327 Sum_probs=126.0
Q ss_pred ceEEEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhh
Q 005553 305 RAVRLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVL 384 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l 384 (691)
...++++++.+++|+.++++..++...++||||+.|++|..+...+||||+++.| ++.++|.||..|..|+.|.+ +
T Consensus 5 ~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~G~~t~~l~~-l 80 (250)
T PRK00054 5 ENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKVGEGTKKLSK-L 80 (250)
T ss_pred eEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEcChHHHHHhc-C
Confidence 4568889999999999999997766789999999999997666678999999986 46899999999999999875 7
Q ss_pred cCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHh
Q 005553 385 SSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDL 464 (691)
Q Consensus 385 ~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~ 464 (691)
+.|+ ++.|+||||.......+.+++++||||+||||++++++++..+ .++++++|++|+.+|+.+.++
T Consensus 81 ~~G~-----~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~-------~~~v~l~~~~r~~~d~~~~~e 148 (250)
T PRK00054 81 KEGD-----ELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKK-------GVEVTTVLGARTKDEVIFEEE 148 (250)
T ss_pred CCCC-----EEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHc-------CCcEEEEEEcCCHHHhhhHHH
Confidence 7777 7999999998422223668999999999999999999998753 247999999999999999888
Q ss_pred hcc
Q 005553 465 LLP 467 (691)
Q Consensus 465 l~~ 467 (691)
+.+
T Consensus 149 l~~ 151 (250)
T PRK00054 149 FAK 151 (250)
T ss_pred HHh
Confidence 865
No 38
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.87 E-value=8.8e-21 Score=191.19 Aligned_cols=141 Identities=16% Similarity=0.295 Sum_probs=117.4
Q ss_pred EEEEecCCEEEEEEecCCCC---ccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCC---chhHHHHHhh
Q 005553 311 SARMLPGETVELNFSKAPGL---SYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEG---SWSKKLYQVL 384 (691)
Q Consensus 311 s~~~l~~~~~~l~~~~~~~~---~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~G---g~T~~L~~~l 384 (691)
+++.+++++++++++.+... .|+||||+.|++|. .+.|||||+|.|. +++.++|.||..+ +.|..|.+.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~-~~~~l~~~v~~~~~g~~~s~~l~~~~ 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPA-DRDRYRIAVLREPASRGGSRYMHELL 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCC-CCCEEEEEEEeccCCCchHHHHHhcC
Confidence 46678899999999987653 79999999999986 2679999999875 4589999999853 3788888878
Q ss_pred cCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHh
Q 005553 385 SSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDL 464 (691)
Q Consensus 385 ~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~ 464 (691)
+.|+ ++.++||||.+... ...++++|||||+||||++++++++.+. .++++++|++|+.+++.+.++
T Consensus 78 ~~Gd-----~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~-------~~~v~l~~~~r~~~~~~~~~~ 144 (211)
T cd06185 78 RVGD-----ELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR-------GADFELHYAGRSREDAAFLDE 144 (211)
T ss_pred CCCC-----EEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC-------CCCEEEEEEeCCCcchhHHHH
Confidence 8787 79999999987432 3467999999999999999999998652 247999999999999988888
Q ss_pred hccc
Q 005553 465 LLPI 468 (691)
Q Consensus 465 l~~~ 468 (691)
+.+.
T Consensus 145 l~~~ 148 (211)
T cd06185 145 LAAL 148 (211)
T ss_pred Hhhh
Confidence 7543
No 39
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.87 E-value=3.6e-21 Score=198.63 Aligned_cols=144 Identities=18% Similarity=0.296 Sum_probs=121.5
Q ss_pred EEEEEecCCEEEEEEecCC-CCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhcCCC
Q 005553 310 VSARMLPGETVELNFSKAP-GLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSSPS 388 (691)
Q Consensus 310 ~s~~~l~~~~~~l~~~~~~-~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~~g~ 388 (691)
++++.+++++.+++++.+. ...++||||++|++|.....++|||||+|.+. +++.++|.||..|..|+.|. .++.|+
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~-~~~~l~l~i~~~G~~t~~l~-~~~~G~ 79 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDP-EEGTISLLVEIRGPKTKLIA-ELKPGE 79 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCC-CCCEEEEEEEEcCchHHHHH-hCCCCC
Confidence 4567789999999998764 35799999999999754456889999999875 56899999999999999986 578887
Q ss_pred CCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcc
Q 005553 389 SIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLP 467 (691)
Q Consensus 389 ~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~ 467 (691)
++.|+||||.+.......++++|||||+||||++++++++..+ .++++++|++|+.+|+.+.|++..
T Consensus 80 -----~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~-------~~~v~l~~~~r~~~d~~~~~el~~ 146 (243)
T cd06192 80 -----KLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN-------GNKVTVLAGAKKAKEEFLDEYFEL 146 (243)
T ss_pred -----EEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC-------CCeEEEEEecCcHHHHHHHHHHHh
Confidence 7999999998744333478999999999999999999998753 258999999999999988888853
No 40
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.87 E-value=3.7e-21 Score=199.07 Aligned_cols=207 Identities=20% Similarity=0.281 Sum_probs=170.5
Q ss_pred cceEEEEEEEEecCCEEEEEEecCC---CCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEc--CCchhH
Q 005553 304 RRAVRLVSARMLPGETVELNFSKAP---GLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKG--EGSWSK 378 (691)
Q Consensus 304 ~~~~~v~s~~~l~~~~~~l~~~~~~---~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~--~Gg~T~ 378 (691)
+..+++++.+.+++|+-+++|..+. .+....|||+++.+|-.+....+|||+.|++. +.+.++++||. .|.+|+
T Consensus 51 ~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~-~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534|consen 51 YYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDD-DKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred eEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCcc-ccceEEEEEEeccCCcccH
Confidence 4677889999999999999888763 35688999999999987778899999999986 36899999998 488999
Q ss_pred HHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCc
Q 005553 379 KLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSD 458 (691)
Q Consensus 379 ~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~ 458 (691)
.|.+ ++.|| .+.+.||.|....+...++++.|||||+||||+++++++++...++ ..++.|++++++++|
T Consensus 130 ~l~~-LkiGd-----~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d----~tki~lly~N~te~D 199 (286)
T KOG0534|consen 130 HLDS-LKIGD-----TVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPED----TTKISLLYANKTEDD 199 (286)
T ss_pred HHhc-CCCCC-----EEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCC----CcEEEEEEecCCccc
Confidence 9876 88888 8999999999854445689999999999999999999999977543 678999999999999
Q ss_pred hhHHHhhcccCCCCCCCCCCceEEEEEEeCCC-CCCCccccccceeec--ccCCCC-CCceeeeCCCchhH
Q 005553 459 LTMLDLLLPISGTPTELPNLKLQIEAYVTREK-QPTTDNSKLIRALWF--KPLATD-APISSVLGPNRWLW 525 (691)
Q Consensus 459 l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~-~~~~~~~~~~~~~~~--~P~~~~-~~~~~v~gp~~~~~ 525 (691)
+.+.++++++. .....+++++.++++++ ..+...+.+..++.- -|.+.+ +....+|||++|.-
T Consensus 200 ILlr~eL~~la----~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~ 266 (286)
T KOG0534|consen 200 ILLREELEELA----SKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPMIN 266 (286)
T ss_pred cchHHHHHHHH----hhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHHHh
Confidence 99999987764 22334899999999987 445666766665432 455555 68889999999764
No 41
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.87 E-value=2.1e-21 Score=200.86 Aligned_cols=145 Identities=19% Similarity=0.356 Sum_probs=122.1
Q ss_pred EEEEEecCCEEEEEEecCC-CCccCCCCEEEEEeCC-CCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhcCC
Q 005553 310 VSARMLPGETVELNFSKAP-GLSYNPTSIMFINVPS-ISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSSP 387 (691)
Q Consensus 310 ~s~~~l~~~~~~l~~~~~~-~~~~~pGQ~v~L~~p~-~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~~g 387 (691)
.+++.+++++.+++++.+. ...|+||||+.|++|. .+..+.||||++|.|. +++.++|.||..|..|+.|. .++.|
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~-~~~~l~l~v~~~G~~s~~l~-~l~~G 79 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDP-EEGTITLLYKVVGKGTRLLS-ELKAG 79 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccC-CCCEEEEEEEEECcchHHHh-cCCCC
Confidence 4567889999999999876 4679999999999986 3456889999999875 46799999999999999886 47877
Q ss_pred CCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcc
Q 005553 388 SSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLP 467 (691)
Q Consensus 388 ~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~ 467 (691)
+ ++.++||||.........++++|||||+||||++|+++++... .++++|+|++|+.+++.+.+++.+
T Consensus 80 d-----~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~-------~~~v~l~~~~r~~~d~~~~~eL~~ 147 (246)
T cd06218 80 D-----ELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER-------GIKVTVLLGFRSADDLFLVEEFEA 147 (246)
T ss_pred C-----EEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc-------CCceEEEEEccchhhhhhHHHHHh
Confidence 7 7999999997432223578999999999999999999998752 247999999999999999999864
Q ss_pred c
Q 005553 468 I 468 (691)
Q Consensus 468 ~ 468 (691)
+
T Consensus 148 l 148 (246)
T cd06218 148 L 148 (246)
T ss_pred h
Confidence 4
No 42
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.87 E-value=5.1e-21 Score=201.74 Aligned_cols=145 Identities=21% Similarity=0.357 Sum_probs=122.5
Q ss_pred EEEEEEEEecCCEEEEEEecCCC-CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhc
Q 005553 307 VRLVSARMLPGETVELNFSKAPG-LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLS 385 (691)
Q Consensus 307 ~~v~s~~~l~~~~~~l~~~~~~~-~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~ 385 (691)
+++++++.+++++.++++..+.. ..++||||+.|+++..+ ++|||||+|.+. +++.++|.||..|..|+.|. .++
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~--~~rpySias~~~-~~~~i~l~vk~~G~~T~~L~-~l~ 77 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKG--ERIPLTIADYDR-EKGTITIVFQAVGKSTRKLA-ELK 77 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCC--CceeeEeeEEcC-CCCEEEEEEEeCCcHHHHHh-cCC
Confidence 46788899999999999986543 46999999999997543 579999999775 56789999999999999998 588
Q ss_pred CCCCCceeEE-EEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHh
Q 005553 386 SPSSIDRLDV-SVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDL 464 (691)
Q Consensus 386 ~g~~~~~~~v-~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~ 464 (691)
.|+ ++ .|.||||.+.. ....+++++||||+||||++++++++.++. .+++++|++|+.+++.+.++
T Consensus 78 ~Gd-----~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~~-------~~v~l~~g~r~~~d~~~~~e 144 (281)
T PRK06222 78 EGD-----SILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEAG-------NKVITIIGARNKDLLILEDE 144 (281)
T ss_pred CCC-----EEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHCC-------CeEEEEEecCCHHHhhcHHH
Confidence 887 68 69999999743 344689999999999999999999987532 37999999999999999888
Q ss_pred hccc
Q 005553 465 LLPI 468 (691)
Q Consensus 465 l~~~ 468 (691)
+.+.
T Consensus 145 l~~~ 148 (281)
T PRK06222 145 MKAV 148 (281)
T ss_pred HHhh
Confidence 8653
No 43
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.86 E-value=5.6e-21 Score=197.90 Aligned_cols=144 Identities=19% Similarity=0.301 Sum_probs=121.4
Q ss_pred EEEEEEEecCCEEEEEEecCCC-CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhcC
Q 005553 308 RLVSARMLPGETVELNFSKAPG-LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSS 386 (691)
Q Consensus 308 ~v~s~~~l~~~~~~l~~~~~~~-~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~~ 386 (691)
++++++.+++|+.+++++.++. ..++||||+.|+++.. .++|||||+|.|. +++.++|.||..|+.|+.|. .++.
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~-~~~~~~~~vk~~G~~t~~l~-~l~~ 77 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDP-EKGTITIVVQVVGKSTRELA-TLEE 77 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcC-CCCEEEEEEEeCCchHHHHH-hcCC
Confidence 5778889999999999987653 4699999999998643 2679999999875 56799999999999998884 4777
Q ss_pred CCCCceeEE-EEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhh
Q 005553 387 PSSIDRLDV-SVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLL 465 (691)
Q Consensus 387 g~~~~~~~v-~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l 465 (691)
|+ ++ .++||||.+.. ..+.++++|||||+||||++++++++.+. .++++|+|++|+.+++.+.+++
T Consensus 78 G~-----~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~-------~~~v~l~~~~r~~~~~~~~~el 144 (248)
T cd06219 78 GD-----KIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEA-------GNRVITIIGARTKDLVILEDEF 144 (248)
T ss_pred CC-----EeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHc-------CCeEEEEEEcCCHHHhhhHHHH
Confidence 77 67 69999999743 34568999999999999999999998753 2479999999999999998988
Q ss_pred ccc
Q 005553 466 LPI 468 (691)
Q Consensus 466 ~~~ 468 (691)
.+.
T Consensus 145 ~~l 147 (248)
T cd06219 145 RAV 147 (248)
T ss_pred Hhh
Confidence 654
No 44
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.86 E-value=2.7e-22 Score=192.49 Aligned_cols=80 Identities=26% Similarity=0.441 Sum_probs=57.9
Q ss_pred CCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCC
Q 005553 411 HDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREK 490 (691)
Q Consensus 411 ~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~ 490 (691)
|++++|||||+||||++|++++++...+++....++|+|+|++|+.+++.|+.++++.+.... ...++++++|+|++.
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~--~~~~~~~~iyvT~~~ 78 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELD--RLGNVEVHIYVTRES 78 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHH--HHTSEEEEEEETT--
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHh--ccccceEEEEEcCCc
Confidence 789999999999999999999999887645566789999999999999999876554332111 115899999999987
Q ss_pred CC
Q 005553 491 QP 492 (691)
Q Consensus 491 ~~ 492 (691)
..
T Consensus 79 ~~ 80 (156)
T PF08030_consen 79 SA 80 (156)
T ss_dssp --
T ss_pred cc
Confidence 43
No 45
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.86 E-value=1.2e-20 Score=201.98 Aligned_cols=210 Identities=12% Similarity=0.186 Sum_probs=153.9
Q ss_pred cceEEEEEEEEecCCEEEEEEecCC--CCccCCCCEEEEEeCCC---CCceeeeeEeeeCCCCCCCeEEEEEEc--CCch
Q 005553 304 RRAVRLVSARMLPGETVELNFSKAP--GLSYNPTSIMFINVPSI---SKLQWHPFTVTSSSNLEPEKLSVVIKG--EGSW 376 (691)
Q Consensus 304 ~~~~~v~s~~~l~~~~~~l~~~~~~--~~~~~pGQ~v~L~~p~~---s~~q~HPFTIas~p~~~~~~l~l~IK~--~Gg~ 376 (691)
+.++++.+++.+++|+.+++|..+. .+.+.||||+.+.++.. ..-.+||||++|.|. +++.++|.||. .|.+
T Consensus 52 ~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~-~~~~le~~IK~~~~G~~ 130 (325)
T PTZ00274 52 YEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANH-TKGYFDIIVKRKKDGLM 130 (325)
T ss_pred eEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCC-CCCeEEEEEEEcCCCcc
Confidence 4577899999999999999997644 57899999999887621 123579999999986 46799999998 4668
Q ss_pred hHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccC-CCCCCeEEEEEEeCC
Q 005553 377 SKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVT-KCKTPQVILICSFKN 455 (691)
Q Consensus 377 T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~-~~~~~~V~Liw~vR~ 455 (691)
|..|.+ ++.|+ ++.+.||+|....+....++++|||||+||||+++++++++++.... .....+|+|+|++|+
T Consensus 131 S~~L~~-lk~Gd-----~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~ 204 (325)
T PTZ00274 131 TNHLFG-MHVGD-----KLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRT 204 (325)
T ss_pred cHHHhc-CCCCC-----EEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCC
Confidence 999985 89988 79999998876433344579999999999999999999988753211 112358999999999
Q ss_pred CCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC---CCccccccceeec--ccCCC-CCCceeeeCCCchh
Q 005553 456 SSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQP---TTDNSKLIRALWF--KPLAT-DAPISSVLGPNRWL 524 (691)
Q Consensus 456 ~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~---~~~~~~~~~~~~~--~P~~~-~~~~~~v~gp~~~~ 524 (691)
.+|+.+.+++.+.. .....+++++..++++..+ ....+...+.+.- .|.+. ......+|||++|+
T Consensus 205 ~~di~~~~eL~~La----~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~Mm 275 (325)
T PTZ00274 205 ERHILLKGLFDDLA----RRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQLL 275 (325)
T ss_pred HHHhhHHHHHHHHH----HhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHHHH
Confidence 99999988886553 1122368888888875422 2233444443321 22222 22457899999943
No 46
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.86 E-value=8.9e-21 Score=206.29 Aligned_cols=203 Identities=16% Similarity=0.254 Sum_probs=150.1
Q ss_pred ceEEEEEEEEecCCEEEEEEecCCC----CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhH
Q 005553 305 RAVRLVSARMLPGETVELNFSKAPG----LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSK 378 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~~----~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~ 378 (691)
...++.+++.+++++.++++..+.. +.|+||||+.|++|..+....|||||+|.|. ++.++|.||.. |..|.
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~~~G~~S~ 79 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKIPGGLFST 79 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEeCCCcchH
Confidence 3567888999999999999986542 5799999999999744444679999999873 57899999985 56899
Q ss_pred HHHHhhcCCCCCceeEEEEECCCCCCCCCCC--CCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCC
Q 005553 379 KLYQVLSSPSSIDRLDVSVEGPYGPVSTHFL--RHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNS 456 (691)
Q Consensus 379 ~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~--~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~ 456 (691)
.|.+.++.|+ ++.+.||+|.+..+.. ..++++|||||+||||+++++++++.+.. .+++.|+|++|+.
T Consensus 80 ~l~~~l~~Gd-----~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~-----~~~v~l~~~~r~~ 149 (352)
T TIGR02160 80 WANDEIRPGD-----TLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP-----RSTFTLVYGNRRT 149 (352)
T ss_pred HHHhcCCCCC-----EEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC-----CceEEEEEEeCCH
Confidence 9988889988 7899999999743222 34789999999999999999999876532 3589999999999
Q ss_pred CchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC-CCccccccce----eecc-cCCCCCCceeeeCCCch
Q 005553 457 SDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQP-TTDNSKLIRA----LWFK-PLATDAPISSVLGPNRW 523 (691)
Q Consensus 457 ~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~-~~~~~~~~~~----~~~~-P~~~~~~~~~v~gp~~~ 523 (691)
+++.+.+++.+.. .....+++++..+++++.. +...+...+. ..-. ..........+|||++|
T Consensus 150 ~d~~~~~el~~l~----~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m 218 (352)
T TIGR02160 150 ASVMFAEELADLK----DKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAM 218 (352)
T ss_pred HHHHHHHHHHHHH----HhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHHH
Confidence 9999999886553 1123368888888876422 2222222111 1100 01122346789999994
No 47
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.85 E-value=2.1e-20 Score=198.72 Aligned_cols=203 Identities=19% Similarity=0.322 Sum_probs=150.3
Q ss_pred ceEEEEEEEEecCCEEEEEEecCC---CCccCCCCEEEEEeCCCC----CceeeeeEeeeCCCCCCCeEEEEEEcC----
Q 005553 305 RAVRLVSARMLPGETVELNFSKAP---GLSYNPTSIMFINVPSIS----KLQWHPFTVTSSSNLEPEKLSVVIKGE---- 373 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~---~~~~~pGQ~v~L~~p~~s----~~q~HPFTIas~p~~~~~~l~l~IK~~---- 373 (691)
+.+++++++.+++++..++++.+. ...++||||+.++++..+ ....||||++|.|. +++.++|+||..
T Consensus 34 ~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~ 112 (300)
T PTZ00319 34 QHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGV 112 (300)
T ss_pred EEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCC
Confidence 467889999999999999997542 256999999999997532 14689999999875 678899999975
Q ss_pred -------CchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCC---------------CCCCEEEEEecCCCcccHHHHHH
Q 005553 374 -------GSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHF---------------LRHDTLVMVSGGSGITPFISVIR 431 (691)
Q Consensus 374 -------Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~---------------~~~~~vvlVAGG~GITp~lsil~ 431 (691)
|..|+.|. .++.|+ ++.++||+|.+...- .+.++++|||||+||||++++++
T Consensus 113 ~~~~~~~G~~S~~L~-~l~~Gd-----~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~ 186 (300)
T PTZ00319 113 HPSFPNGGRLSQHLY-HMKLGD-----KIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIH 186 (300)
T ss_pred CCCCCCCCChhhhhh-cCCCCC-----EEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHH
Confidence 88999995 588888 799999999863210 12368999999999999999999
Q ss_pred HHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC--CCccccccceee--ccc
Q 005553 432 ELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQP--TTDNSKLIRALW--FKP 507 (691)
Q Consensus 432 ~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~--~~~~~~~~~~~~--~~P 507 (691)
+++.... ..++++|+|++|+.+++.+.+++.+.. ...+++++..+++++.+ ....+...+.+. ..|
T Consensus 187 ~l~~~~~----~~~~i~liyg~r~~~dl~~~~eL~~~~------~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~ 256 (300)
T PTZ00319 187 AIKKNKE----DRTKVFLVYANQTEDDILLRKELDEAA------KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLP 256 (300)
T ss_pred HHHhCCC----CCceEEEEEecCCHHHhhHHHHHHHHh------hCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcC
Confidence 9886432 235899999999999999999986521 34578888888875322 122344333222 122
Q ss_pred CCC------CCCceeeeCCCchh
Q 005553 508 LAT------DAPISSVLGPNRWL 524 (691)
Q Consensus 508 ~~~------~~~~~~v~gp~~~~ 524 (691)
.+. ++....+|||++|.
T Consensus 257 ~~~~~~~~~~~~~vyiCGp~~mv 279 (300)
T PTZ00319 257 VPDPQNSGIKKVMALMCGPPPML 279 (300)
T ss_pred CccccccccCCeEEEEECCHHHH
Confidence 221 23567999999954
No 48
>PRK05713 hypothetical protein; Provisional
Probab=99.85 E-value=8e-21 Score=203.29 Aligned_cols=191 Identities=14% Similarity=0.220 Sum_probs=143.3
Q ss_pred ceEEEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEc--CCchhHHHHH
Q 005553 305 RAVRLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKG--EGSWSKKLYQ 382 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~--~Gg~T~~L~~ 382 (691)
.+.++++++.+++|+.+++++.+..+.|+||||+.|.++. -.+|||||+|.|. +++.++|.||. .|.+|+.| +
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~-~~~~l~~~I~~~~~G~~s~~l-~ 166 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPG-EDPFLEFHIDCSRPGAFCDAA-R 166 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCC-CCCeEEEEEEEcCCCccchhh-h
Confidence 3578889999999999999987667889999999999864 2589999999885 46789999984 57789887 5
Q ss_pred hhcCCCCCceeEEEEECCCCCCC-CCCC-CCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchh
Q 005553 383 VLSSPSSIDRLDVSVEGPYGPVS-THFL-RHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLT 460 (691)
Q Consensus 383 ~l~~g~~~~~~~v~VeGPYG~~~-~~~~-~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~ 460 (691)
.++.|+ ++.+.||+|... .+.. ..++++|||||+||||++|++++++++.. .++++|+|++|+.+++.
T Consensus 167 ~l~~Gd-----~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~-----~~~v~l~~g~r~~~d~~ 236 (312)
T PRK05713 167 QLQVGD-----LLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH-----QGPIRLLHLARDSAGHY 236 (312)
T ss_pred cCCCCC-----EEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC-----CCcEEEEEEcCchHHhh
Confidence 588887 788999998532 1222 35789999999999999999999876542 35799999999999999
Q ss_pred HHHhhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceeecccCCCCCCceeeeCCCchh
Q 005553 461 MLDLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 461 ~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
+.+++.++. ....+++++...++.....+++ ..+. .......+|||++|+
T Consensus 237 ~~~el~~l~-----~~~~~~~~~~~~~~~~~~~l~~--------~~~~-~~~~~vyiCGp~~mv 286 (312)
T PRK05713 237 LAEPLAALA-----GRHPQLSVELVTAAQLPAALAE--------LRLV-SRQTMALLCGSPASV 286 (312)
T ss_pred hHHHHHHHH-----HHCCCcEEEEEECcchhhhhhh--------ccCC-CCCeEEEEeCCHHHH
Confidence 999887653 2345788776665422111111 0111 122456799999954
No 49
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.85 E-value=3.6e-20 Score=197.71 Aligned_cols=210 Identities=17% Similarity=0.172 Sum_probs=150.2
Q ss_pred ceEEEEEEEEec-----CCEEEEEEecCCCCccCCCCEEEEEeCCCC------CceeeeeEeeeCCCCC--C-CeEEEEE
Q 005553 305 RAVRLVSARMLP-----GETVELNFSKAPGLSYNPTSIMFINVPSIS------KLQWHPFTVTSSSNLE--P-EKLSVVI 370 (691)
Q Consensus 305 ~~~~v~s~~~l~-----~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s------~~q~HPFTIas~p~~~--~-~~l~l~I 370 (691)
...++++++.++ +++.+++++.+..++|.||||+.|.+|+.. ...+|+|||+|+|.++ + .+++|.|
T Consensus 25 ~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~V 104 (307)
T PLN03116 25 YTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCV 104 (307)
T ss_pred EEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEE
Confidence 357888999887 899999999888889999999999887421 1247999999998422 2 3799999
Q ss_pred Ec---------------CCchhHHHHHhhcCCCCCceeEEEEECCCCCCCC-CC-CCCCEEEEEecCCCcccHHHHHHHH
Q 005553 371 KG---------------EGSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVST-HF-LRHDTLVMVSGGSGITPFISVIREL 433 (691)
Q Consensus 371 K~---------------~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~-~~-~~~~~vvlVAGG~GITp~lsil~~L 433 (691)
|. .|..|+.|.+ ++.|+ .+.|.||+|.+.. +. +..++++|||||+||||++|+++++
T Consensus 105 r~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd-----~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~ 178 (307)
T PLN03116 105 RRAVYYDPETGKEDPAKKGVCSNFLCD-AKPGD-----KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRM 178 (307)
T ss_pred EEEEEecCCcCCCCCccCcchhhhHhh-CCCCC-----EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHH
Confidence 85 3678888887 88888 7999999999743 21 3457899999999999999999998
Q ss_pred HHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC-CCccccccceeec-c----c
Q 005553 434 MYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQP-TTDNSKLIRALWF-K----P 507 (691)
Q Consensus 434 ~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~-~~~~~~~~~~~~~-~----P 507 (691)
+..........+++.|+|++|+.+|+.+.|++.++.. ....+++++..++++.+. ....+...+.+.- . +
T Consensus 179 l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~----~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~ 254 (307)
T PLN03116 179 FMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLK----DYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFK 254 (307)
T ss_pred HhhccccccCCCcEEEEEecCCcccchHHHHHHHHHH----hCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHh
Confidence 7643210111357999999999999999999876531 122378888888886532 1122222211110 0 1
Q ss_pred CCCCCCceeeeCCCchh
Q 005553 508 LATDAPISSVLGPNRWL 524 (691)
Q Consensus 508 ~~~~~~~~~v~gp~~~~ 524 (691)
.........+|||++|.
T Consensus 255 ~~~~~~~vYiCGp~~mv 271 (307)
T PLN03116 255 LLDNGAHIYFCGLKGMM 271 (307)
T ss_pred hhcCCcEEEEeCCHHHH
Confidence 11123556799999854
No 50
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.85 E-value=5.1e-20 Score=191.58 Aligned_cols=167 Identities=23% Similarity=0.384 Sum_probs=139.0
Q ss_pred cceEEEEEEEEecCCEEEEEEecCCCCc--cCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHH
Q 005553 304 RRAVRLVSARMLPGETVELNFSKAPGLS--YNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKK 379 (691)
Q Consensus 304 ~~~~~v~s~~~l~~~~~~l~~~~~~~~~--~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~ 379 (691)
+...++.+++..++|+..+++..+.+.. |+||||+.|.++..+....+.||++|+|. +++.+.+.||+. |+.|+.
T Consensus 5 ~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~-~~~~~~isVk~~~~G~~S~~ 83 (266)
T COG1018 5 FRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPD-EDSLYRISVKREDGGGGSNW 83 (266)
T ss_pred eEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCC-CCceEEEEEEEeCCCcccHH
Confidence 4567889999999999999999988874 99999999999977667899999999997 557899999996 789999
Q ss_pred HHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCch
Q 005553 380 LYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDL 459 (691)
Q Consensus 380 L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l 459 (691)
|++.+++|| ++.+.+|.|.+..+....++++|+|||+||||++||++++...+ . .+|.|++++|+.+++
T Consensus 84 Lh~~lk~Gd-----~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~-----~-~~v~l~h~~R~~~~~ 152 (266)
T COG1018 84 LHDHLKVGD-----TLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG-----P-ADVVLVHAARTPADL 152 (266)
T ss_pred HHhcCCCCC-----EEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC-----C-CCEEEEEecCChhhc
Confidence 999999998 78889999999655545558999999999999999999988753 2 589999999999999
Q ss_pred hHHHhhcccCCCCCCCCCCceEEEEEEe
Q 005553 460 TMLDLLLPISGTPTELPNLKLQIEAYVT 487 (691)
Q Consensus 460 ~~~d~l~~~~~~~~~~~~~~l~i~iyvT 487 (691)
.+.|+ .... +.......+..+..
T Consensus 153 af~de-~~l~----~~~~~~~~~~~~~~ 175 (266)
T COG1018 153 AFRDE-LELA----AELPNALLLGLYTE 175 (266)
T ss_pred chhhH-HHHH----hhCCCCeeEEEEEe
Confidence 99986 3332 11223355555554
No 51
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.85 E-value=3.2e-20 Score=196.22 Aligned_cols=210 Identities=22% Similarity=0.244 Sum_probs=150.4
Q ss_pred ceEEEEEEEEec-----CCEEEEEEecCCCCccCCCCEEEEEeCCCC-----CceeeeeEeeeCCCC---CCCeEEEEEE
Q 005553 305 RAVRLVSARMLP-----GETVELNFSKAPGLSYNPTSIMFINVPSIS-----KLQWHPFTVTSSSNL---EPEKLSVVIK 371 (691)
Q Consensus 305 ~~~~v~s~~~l~-----~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s-----~~q~HPFTIas~p~~---~~~~l~l~IK 371 (691)
..+++++++.++ +++.++++..+..++|+||||+.|.+|... ....|||||+|.|.+ +++.++|.||
T Consensus 9 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk 88 (286)
T cd06208 9 LIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVK 88 (286)
T ss_pred eEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEE
Confidence 346788888887 689999998876788999999999877432 234799999998753 2468999999
Q ss_pred cC------------CchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCC-CCCCEEEEEecCCCcccHHHHHHHHHHhcc
Q 005553 372 GE------------GSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHF-LRHDTLVMVSGGSGITPFISVIRELMYAST 438 (691)
Q Consensus 372 ~~------------Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~-~~~~~vvlVAGG~GITp~lsil~~L~~~~~ 438 (691)
.. |..|+.|.+ ++.|+ +|.+.||+|.+.... ...++++|||||+||||+++++++++....
T Consensus 89 ~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd-----~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~ 162 (286)
T cd06208 89 RLVYTDPETDETKKGVCSNYLCD-LKPGD-----DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKH 162 (286)
T ss_pred EEEEecCCCCceeccchHHHHhh-CCCCC-----EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhh
Confidence 85 778888887 78887 799999999874322 234689999999999999999999886521
Q ss_pred cCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC-CCccccccceee------cccCCCC
Q 005553 439 VTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQP-TTDNSKLIRALW------FKPLATD 511 (691)
Q Consensus 439 ~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~-~~~~~~~~~~~~------~~P~~~~ 511 (691)
......+++.|+|++|+.+++.+.+++.+.. +....+++++..+++++.. ....+...+.+. .......
T Consensus 163 ~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~----~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~ 238 (286)
T cd06208 163 ADYKFTGLAWLFFGVPNSDSLLYDDELEKYP----KQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKD 238 (286)
T ss_pred cccCCCCCEEEEEEecCccchhHHHHHHHHH----HhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcC
Confidence 1111245799999999999999988886653 1123478898889886532 222222222111 0001113
Q ss_pred CCceeeeCCCchh
Q 005553 512 APISSVLGPNRWL 524 (691)
Q Consensus 512 ~~~~~v~gp~~~~ 524 (691)
.....+|||++|.
T Consensus 239 ~~~vYiCGp~~m~ 251 (286)
T cd06208 239 NTHVYICGLKGME 251 (286)
T ss_pred CcEEEEeCCchHH
Confidence 3467899999943
No 52
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.85 E-value=3.2e-20 Score=193.83 Aligned_cols=192 Identities=16% Similarity=0.276 Sum_probs=140.9
Q ss_pred eEEEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhc
Q 005553 306 AVRLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLS 385 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~ 385 (691)
..++++++.+++++.+++++.+ ..++||||+.|++|..+ .|||||++.+ ++.++|+||..|..|+.|.+ ++
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~---~~~~~~~Ik~~G~~S~~L~~-l~ 79 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG---DGYIDLTIRRVGKVTDEIFN-LK 79 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC---CCEEEEEEEeCCchhhHHHh-CC
Confidence 4688899999999999999864 47999999999998653 3999998863 46899999999999999974 88
Q ss_pred CCCCCceeEEEEECCCCC-CCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHh
Q 005553 386 SPSSIDRLDVSVEGPYGP-VSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDL 464 (691)
Q Consensus 386 ~g~~~~~~~v~VeGPYG~-~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~ 464 (691)
+|+ ++.|+||+|. +..+....++++|||||+||||++|+++++.++.+ ..++++|+|++|+.+++.+.++
T Consensus 80 ~Gd-----~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~----~~~~v~L~~g~r~~~~l~~~~e 150 (263)
T PRK08221 80 EGD-----KLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ----EIKSLDLILGFKNPDDILFKED 150 (263)
T ss_pred CCC-----EEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc----cCceEEEEEecCCHHHhhHHHH
Confidence 887 7899999998 43322345799999999999999999999876432 2358999999999999999999
Q ss_pred hcccCCCCCCCCCCceEEEEEEeCCCC-CCCccccccceeec--ccCCCCCCceeeeCCCchh
Q 005553 465 LLPISGTPTELPNLKLQIEAYVTREKQ-PTTDNSKLIRALWF--KPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 465 l~~~~~~~~~~~~~~l~i~iyvTr~~~-~~~~~~~~~~~~~~--~P~~~~~~~~~v~gp~~~~ 524 (691)
+.+.. .+ .++++.++++++ .....+...+.+.- .+.+ ..+...+|||++|.
T Consensus 151 l~~~~------~~--~~~~~~~~~~~~~~~~~~G~v~~~l~~~~~~~~-~~~~vylCGp~~mv 204 (263)
T PRK08221 151 LKRWR------EK--INLILTLDEGEEGYRGNVGLVTKYIPELTLKDI-DNMQVIVVGPPIMM 204 (263)
T ss_pred HHHHh------hc--CcEEEEecCCCCCCccCccccChhhHhccCCCc-CCeEEEEECCHHHH
Confidence 87653 11 224444454432 12222332221111 1111 34567899999953
No 53
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.85 E-value=3.5e-20 Score=193.35 Aligned_cols=193 Identities=16% Similarity=0.280 Sum_probs=140.0
Q ss_pred eEEEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhc
Q 005553 306 AVRLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLS 385 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~ 385 (691)
.++++++...++++..++++.+ ..++||||+.|.+|..+ .||||+++. +++.++|.||..|+.|..|.+ ++
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~~---~~pySi~~~---~~~~l~~~Vk~~G~~S~~L~~-l~ 77 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKYG---EAPISVSGI---GEGYIDLTIRRVGKVTDEVFT-LK 77 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCCC---ccceecCCC---CCCeEEEEEEeCchhhHHHHc-CC
Confidence 4678888888999999988764 57999999999998643 489999874 357899999999999999975 88
Q ss_pred CCCCCceeEEEEECCCCC-CCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHh
Q 005553 386 SPSSIDRLDVSVEGPYGP-VSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDL 464 (691)
Q Consensus 386 ~g~~~~~~~v~VeGPYG~-~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~ 464 (691)
.|+ ++.|+||||. +..+....++++|||||+||||+++++++++++.+ ..++++|+|++|+.+++.+.++
T Consensus 78 ~Gd-----~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~----~~~~v~L~~~~r~~~~~~~~~e 148 (261)
T TIGR02911 78 EGD-----NLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK----EIKSLNLILGFKTPDDILFKED 148 (261)
T ss_pred CCC-----EEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc----cCceEEEEEecCCHHHhhHHHH
Confidence 887 7999999998 43222346799999999999999999999876432 2358999999999999999998
Q ss_pred hcccCCCCCCCCCCceEEEEEEeCCC-CCCCccccccceeecc-cCCCCCCceeeeCCCchh
Q 005553 465 LLPISGTPTELPNLKLQIEAYVTREK-QPTTDNSKLIRALWFK-PLATDAPISSVLGPNRWL 524 (691)
Q Consensus 465 l~~~~~~~~~~~~~~l~i~iyvTr~~-~~~~~~~~~~~~~~~~-P~~~~~~~~~v~gp~~~~ 524 (691)
+.+.. .+.++ +..+.++. +...+.+...+.+.-. ..+...+...+|||+++.
T Consensus 149 L~~l~------~~~~~--~~~~~~~~~~~~~~~g~v~~~l~~~~~~~~~~~~v~lCGp~~mv 202 (261)
T TIGR02911 149 IAEWK------GNINL--TLTLDEAEEDYKGNIGLVTKYIPELTLKDIEEVQAIVVGPPIMM 202 (261)
T ss_pred HHHHH------hcCcE--EEEEcCCCCCCcCCeeccCHhHHhccCCCccceEEEEECCHHHH
Confidence 87653 12233 33344332 2222333322222111 111123567899999953
No 54
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.84 E-value=4.8e-20 Score=204.37 Aligned_cols=202 Identities=13% Similarity=0.215 Sum_probs=150.7
Q ss_pred eEEEEEEEEecCCEEEEEEecC--CCCccCCCCEEEEEeCCC-----------------------------CCceeeeeE
Q 005553 306 AVRLVSARMLPGETVELNFSKA--PGLSYNPTSIMFINVPSI-----------------------------SKLQWHPFT 354 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~--~~~~~~pGQ~v~L~~p~~-----------------------------s~~q~HPFT 354 (691)
..++++++.+++++.++++..+ ...+|+||||+.|++|.. +....||||
T Consensus 135 ~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~yS 214 (409)
T PRK05464 135 ECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYS 214 (409)
T ss_pred EEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeec
Confidence 5688889999999999999876 346799999999998742 123579999
Q ss_pred eeeCCCCCCCeEEEEEEc-----------CCchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCc
Q 005553 355 VTSSSNLEPEKLSVVIKG-----------EGSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGI 423 (691)
Q Consensus 355 Ias~p~~~~~~l~l~IK~-----------~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GI 423 (691)
|+|.|. +++.++|.||. .|..|+.|.+ ++.|+ ++.|+||+|.+... ...++++|||||+||
T Consensus 215 ias~p~-~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~~Gd-----~v~v~gP~G~f~~~-~~~~~ivlIAgGtGI 286 (409)
T PRK05464 215 MANYPE-EKGIIMLNVRIATPPPGNPDVPPGIMSSYIFS-LKPGD-----KVTISGPFGEFFAK-DTDAEMVFIGGGAGM 286 (409)
T ss_pred cCCCCC-CCCeEEEEEEEeecCCCcCCCCCCchhhHHHh-CCCCC-----EEEEEccccCcEec-CCCceEEEEEeccCh
Confidence 999986 56789999995 4889999985 88887 78999999998543 456899999999999
Q ss_pred ccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCC---Ccccccc
Q 005553 424 TPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPT---TDNSKLI 500 (691)
Q Consensus 424 Tp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~---~~~~~~~ 500 (691)
||+++++++++.+.+ ..++++|+|++|+.+++.+.+++.+.. ....++++++.++++.+.+ ...+...
T Consensus 287 aP~~sml~~~l~~~~----~~~~v~L~~g~r~~~d~~~~~el~~l~-----~~~~~~~~~~~~s~~~~~~~~~g~~G~v~ 357 (409)
T PRK05464 287 APMRSHIFDQLKRLK----SKRKISFWYGARSLREMFYVEDFDQLA-----AENPNFKWHVALSDPLPEDNWTGYTGFIH 357 (409)
T ss_pred hHHHHHHHHHHhCCC----CCceEEEEEecCCHHHhhHHHHHHHHH-----HhCCCeEEEEEEcCCCCCCCCCCccceeC
Confidence 999999998876532 246899999999999999988886653 2446788888888754322 2223322
Q ss_pred ceee---ccc-CCCCCCceeeeCCCchh
Q 005553 501 RALW---FKP-LATDAPISSVLGPNRWL 524 (691)
Q Consensus 501 ~~~~---~~P-~~~~~~~~~v~gp~~~~ 524 (691)
+.+. ... ...+.....+|||++|.
T Consensus 358 ~~l~~~~l~~~~~~~~~~vyiCGP~~m~ 385 (409)
T PRK05464 358 NVLYENYLKDHEAPEDCEYYMCGPPMMN 385 (409)
T ss_pred HHHHHhhhhhcCCCCCeEEEEECCHHHH
Confidence 2111 110 11123456799999954
No 55
>PRK05802 hypothetical protein; Provisional
Probab=99.84 E-value=1.1e-19 Score=194.40 Aligned_cols=150 Identities=17% Similarity=0.241 Sum_probs=124.6
Q ss_pred ceEEEEEEEEecCCEEEEEEecCCC---CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHH
Q 005553 305 RAVRLVSARMLPGETVELNFSKAPG---LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLY 381 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~~---~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~ 381 (691)
...++++++.+++++.++++..|.. ..++||||++|++|..+.+..|||||++.+. +++.+++.||..|..|+.|.
T Consensus 65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~-~~g~l~l~ik~~G~~T~~L~ 143 (320)
T PRK05802 65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADT-EENIIKVAIEIRGVKTKKIA 143 (320)
T ss_pred EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCC-CCCEEEEEEEecChhHHHHh
Confidence 3578899999999999999987643 2479999999999865556789999999875 57899999999999999997
Q ss_pred HhhcCCCCCceeEEEEECCCCCC--CC-C--CCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCC
Q 005553 382 QVLSSPSSIDRLDVSVEGPYGPV--ST-H--FLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNS 456 (691)
Q Consensus 382 ~~l~~g~~~~~~~v~VeGPYG~~--~~-~--~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~ 456 (691)
.++.|+ ++.|.||||+. .. + ....+++++||||+||||++++++++.+++ .++++++++|+.
T Consensus 144 -~l~~Gd-----~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~-------~~v~li~g~r~~ 210 (320)
T PRK05802 144 -KLNKGD-----EILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG-------NKIIVIIDKGPF 210 (320)
T ss_pred -cCCCCC-----EEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC-------CcEEEEEeCCCH
Confidence 588887 79999999653 21 1 123568999999999999999999997643 379999999999
Q ss_pred CchhHHHhhccc
Q 005553 457 SDLTMLDLLLPI 468 (691)
Q Consensus 457 ~~l~~~d~l~~~ 468 (691)
+++.+.|++.+.
T Consensus 211 ~~~~~~~el~~~ 222 (320)
T PRK05802 211 KNNFIKEYLELY 222 (320)
T ss_pred HHHHHHHHHHHh
Confidence 999888888543
No 56
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.83 E-value=9.7e-20 Score=186.86 Aligned_cols=135 Identities=19% Similarity=0.362 Sum_probs=117.2
Q ss_pred EEEEEEEecCCEEEEEEecCCCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhcCC
Q 005553 308 RLVSARMLPGETVELNFSKAPGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLSSP 387 (691)
Q Consensus 308 ~v~s~~~l~~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~~g 387 (691)
++.+++.+++|+.+++++.+ .+|+||||+.|++|.. ..||||++|.| +.++|.||..|.+|+.|.+ ++.|
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~----~~l~~~v~~~G~~s~~L~~-l~~G 71 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID----GPNSITVKKVGEATSALHD-LKEG 71 (233)
T ss_pred EEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC----CeEEEEEEecChHHHHHHh-cCCC
Confidence 67888999999999999864 4799999999999864 35999999986 6899999999999999987 8888
Q ss_pred CCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcc
Q 005553 388 SSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLP 467 (691)
Q Consensus 388 ~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~ 467 (691)
+ ++.++||||.... .. .+++++||||+||||++++++++..+ ++++++|++|+.+++.+.+++.+
T Consensus 72 d-----~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~--------~~i~l~~~~r~~~d~~~~~eL~~ 136 (233)
T cd06220 72 D-----KLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKA--------ADVTVLLGARTKEELLFLDRLRK 136 (233)
T ss_pred C-----EEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhc--------CCEEEEEecCChHHChhHHHHhh
Confidence 7 7899999998422 22 78999999999999999999998753 47999999999999999888853
No 57
>PLN02252 nitrate reductase [NADPH]
Probab=99.83 E-value=9e-20 Score=216.67 Aligned_cols=207 Identities=22% Similarity=0.284 Sum_probs=157.4
Q ss_pred cceEEEEEEEEecCCEEEEEEecCCC---CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC-------
Q 005553 304 RRAVRLVSARMLPGETVELNFSKAPG---LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE------- 373 (691)
Q Consensus 304 ~~~~~v~s~~~l~~~~~~l~~~~~~~---~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~------- 373 (691)
+..+++++++.+++|+.+++|..+.. +.+.||||++|+++..+....||||++|.+. +++.++|+||..
T Consensus 634 ~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~-~~g~lel~VK~~~~~~~~~ 712 (888)
T PLN02252 634 KIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDD-EVGHFELVIKVYFKNVHPK 712 (888)
T ss_pred eEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCC-CCCEEEEEEEEEeccccCc
Confidence 56788999999999999999987643 4689999999998754555789999999885 567999999975
Q ss_pred ----CchhHHHHHhhcCCCCCceeEEEEECCCCCCCCC----------CCCCCEEEEEecCCCcccHHHHHHHHHHhccc
Q 005553 374 ----GSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTH----------FLRHDTLVMVSGGSGITPFISVIRELMYASTV 439 (691)
Q Consensus 374 ----Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~----------~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~ 439 (691)
|.+|+.|. .++.|+ ++.|.||+|.+... ....++++|||||+||||+++++++++....
T Consensus 713 ~p~gG~~S~~L~-~L~vGd-----~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~- 785 (888)
T PLN02252 713 FPNGGLMSQYLD-SLPIGD-----TIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE- 785 (888)
T ss_pred cCCCCchhhHHh-cCCCCC-----EEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC-
Confidence 77999885 588887 79999999986210 1235799999999999999999999986532
Q ss_pred CCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCC--CCCCccccccceee--cccCCCCCCce
Q 005553 440 TKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREK--QPTTDNSKLIRALW--FKPLATDAPIS 515 (691)
Q Consensus 440 ~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~--~~~~~~~~~~~~~~--~~P~~~~~~~~ 515 (691)
..+++.|+|++|+.+|+.+.++|.+.. +....+++++..+|++. ......+...+.+. ..+.+.+....
T Consensus 786 ---d~t~i~Liyg~Rt~~Dil~~eEL~~la----~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~v 858 (888)
T PLN02252 786 ---DKTEMSLVYANRTEDDILLREELDRWA----AEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLA 858 (888)
T ss_pred ---CCCcEEEEEEECCHHHhhHHHHHHHHH----HhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEE
Confidence 246899999999999999999987653 22335799988888753 22333454444322 12323345678
Q ss_pred eeeCCCchhH
Q 005553 516 SVLGPNRWLW 525 (691)
Q Consensus 516 ~v~gp~~~~~ 525 (691)
.+|||++|+.
T Consensus 859 yiCGPp~Mi~ 868 (888)
T PLN02252 859 LMCGPPPMIE 868 (888)
T ss_pred EEeCCHHHHH
Confidence 9999999653
No 58
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.82 E-value=1.2e-19 Score=200.94 Aligned_cols=201 Identities=12% Similarity=0.211 Sum_probs=149.6
Q ss_pred eEEEEEEEEecCCEEEEEEecCC--CCccCCCCEEEEEeCCC-----------------------------CCceeeeeE
Q 005553 306 AVRLVSARMLPGETVELNFSKAP--GLSYNPTSIMFINVPSI-----------------------------SKLQWHPFT 354 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~~--~~~~~pGQ~v~L~~p~~-----------------------------s~~q~HPFT 354 (691)
..++++.+.+++++.+++++.++ ...|+||||+.+.+|.. +...+||||
T Consensus 131 ~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~yS 210 (405)
T TIGR01941 131 ECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYS 210 (405)
T ss_pred eeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeec
Confidence 45788888899999999988753 36799999999998742 123569999
Q ss_pred eeeCCCCCCCeEEEEEEc-----------CCchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCc
Q 005553 355 VTSSSNLEPEKLSVVIKG-----------EGSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGI 423 (691)
Q Consensus 355 Ias~p~~~~~~l~l~IK~-----------~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GI 423 (691)
|+|.|. +++.++|.||. .|..|..|.+ ++.|+ ++.++||+|.+... ...++++|||||+||
T Consensus 211 ias~p~-~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~~Gd-----~v~i~gP~G~f~l~-~~~~~lvlIAgGtGI 282 (405)
T TIGR01941 211 MANYPA-EKGIIKLNVRIATPPFINSDIPPGIMSSYIFS-LKPGD-----KVTISGPFGEFFAK-DTDAEMVFIGGGAGM 282 (405)
T ss_pred CCCCCC-CCCeEEEEEEEeccCcccCCCCCCcHHHHHhc-CCCcC-----EEEEEeccCCCeec-CCCCCEEEEecCcCc
Confidence 999986 56789999996 3889999985 88888 79999999998543 346789999999999
Q ss_pred ccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCC---Ccccccc
Q 005553 424 TPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPT---TDNSKLI 500 (691)
Q Consensus 424 Tp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~---~~~~~~~ 500 (691)
||+++++++++.+.+ ..++++++|++|+.+++.+.+++.+.. ....++++++.++++.+.+ ...+...
T Consensus 283 aP~lsmi~~~l~~~~----~~~~v~l~~g~R~~~dl~~~~el~~l~-----~~~~~~~~~~~~s~~~~~~~~~g~~G~v~ 353 (405)
T TIGR01941 283 APMRSHIFDQLKRLK----SKRKISFWYGARSLREMFYQEDFDQLE-----AENPNFVWHVALSDPQPEDNWTGYTGFIH 353 (405)
T ss_pred chHHHHHHHHHhcCC----CCCeEEEEEecCCHHHHhHHHHHHHHH-----HhCCCeEEEEEeCCCCccCCCCCccceeC
Confidence 999999998775422 245899999999999999998886642 2456888888888754322 2223322
Q ss_pred ceee---cc--cCCCCCCceeeeCCCchh
Q 005553 501 RALW---FK--PLATDAPISSVLGPNRWL 524 (691)
Q Consensus 501 ~~~~---~~--P~~~~~~~~~v~gp~~~~ 524 (691)
+.+. .. +.+ ......+|||+.|+
T Consensus 354 ~~l~~~~l~~~~~~-~~~~vylCGP~~m~ 381 (405)
T TIGR01941 354 NVLYENYLKDHDAP-EDCEFYMCGPPMMN 381 (405)
T ss_pred HHHHHhhhcccCCC-CCeEEEEeCCHHHH
Confidence 2111 11 111 23456899999954
No 59
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.82 E-value=2.6e-19 Score=187.40 Aligned_cols=194 Identities=20% Similarity=0.215 Sum_probs=142.0
Q ss_pred cCCEEEEEEecC--CCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC-----------CchhHHHHH
Q 005553 316 PGETVELNFSKA--PGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE-----------GSWSKKLYQ 382 (691)
Q Consensus 316 ~~~~~~l~~~~~--~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~-----------Gg~T~~L~~ 382 (691)
++++.+++|..+ ...+|.||||+.|.+|. ....|||||+|.|+++++.++|.||.. |..|+.|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 457899999887 46789999999999875 346799999999864468999999985 778999875
Q ss_pred hhcCCCCCceeEEEEECCCC-CCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCC-Cchh
Q 005553 383 VLSSPSSIDRLDVSVEGPYG-PVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNS-SDLT 460 (691)
Q Consensus 383 ~l~~g~~~~~~~v~VeGPYG-~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~-~~l~ 460 (691)
++.|+ .+.+.||+| .+..+....++++|||||+||||+++++++++....+. ...+++.|+|++|+. +++.
T Consensus 92 -lk~Gd-----~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~-~~~~~v~l~~g~r~~~~d~~ 164 (267)
T cd06182 92 -LQLGA-----KVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANG-KARGPAWLFFGCRNFASDYL 164 (267)
T ss_pred -CCCCC-----EEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc-ccCCCEEEEEeCCCCccccc
Confidence 88887 799999999 66433334679999999999999999999998642110 124579999999999 9999
Q ss_pred HHHhhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceee-----cccCCCCCCceeeeCCCc-hhH
Q 005553 461 MLDLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALW-----FKPLATDAPISSVLGPNR-WLW 525 (691)
Q Consensus 461 ~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~-----~~P~~~~~~~~~v~gp~~-~~~ 525 (691)
+.|++.+.. ....+++++..+++++.. ..+...+.+. ......+.....+|||+. |..
T Consensus 165 ~~del~~~~-----~~~~~~~~~~~~S~~~~~--~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp~~~m~~ 228 (267)
T cd06182 165 YREELQEAL-----KDGALTRLDVAFSREQAE--PKVYVQDKLKEHAEELRRLLNEGAHIYVCGDAKSMAK 228 (267)
T ss_pred HHHHHHHHH-----hCCCcceEEEEEccCCCC--CceehHHHHHHhHHHHHHHHhcCCEEEEECCcccchH
Confidence 988887653 245678888888876432 1111111000 000001234678999998 653
No 60
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.82 E-value=6e-19 Score=182.98 Aligned_cols=192 Identities=17% Similarity=0.314 Sum_probs=143.2
Q ss_pred EEEEEEEEecCCEEEEEEecCCC-CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCe--EEEEEEcCCchhHHHHHh
Q 005553 307 VRLVSARMLPGETVELNFSKAPG-LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEK--LSVVIKGEGSWSKKLYQV 383 (691)
Q Consensus 307 ~~v~s~~~l~~~~~~l~~~~~~~-~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~--l~l~IK~~Gg~T~~L~~~ 383 (691)
.++.+++.+++++.++++..+.. +.++||||+.|+.|+ ...+|||++|.+. +++. +.+.+++.|..|+.+.+.
T Consensus 10 ~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~-~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 10 YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPD-DKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred cEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCC-cCCcEEEEEEEEeCChHHHHHhhc
Confidence 68899999999999999887654 579999999999998 4899999999986 4554 455555589999999874
Q ss_pred hcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHH
Q 005553 384 LSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLD 463 (691)
Q Consensus 384 l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d 463 (691)
+++| .+.+.||||+........+.+++||||+|++|++++++++.+++ + ..+|+++|++|+++++.+.+
T Consensus 86 -k~gd-----~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~----~~~V~~~~G~~~~~dl~~~~ 154 (252)
T COG0543 86 -KEGD-----KIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-D----ANKVTLLYGARTAKDLLLLD 154 (252)
T ss_pred -cCCC-----EEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-C----CceEEEEEeccChhhcccHH
Confidence 7777 69999999998543334455999999999999999999998754 1 46899999999999999999
Q ss_pred hhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceeecccCCCCCCceeeeCCCchh
Q 005553 464 LLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 464 ~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
++.+... . +++..+. +.+.+..+.....+.-.....+.....+|||+.|.
T Consensus 155 el~~~~~-----~----~~~~~~~--~~~~G~~G~v~~~~~~~~~~~~~~~v~~cGp~~M~ 204 (252)
T COG0543 155 ELEELAE-----K----EVHPVTD--DGWKGRKGFVTTDVLKELLDLEVDDVYICGPPAMV 204 (252)
T ss_pred HHHHhhc-----C----cEEEEEC--CCCCccCcceeHHHHhhhccccCCEEEEECCHHHH
Confidence 9866531 1 3333333 44455555442222221111244566899999854
No 61
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.82 E-value=3.1e-19 Score=193.39 Aligned_cols=206 Identities=19% Similarity=0.249 Sum_probs=146.7
Q ss_pred EEEEEEEec-----CCEEEEEEecCCCCccCCCCEEEEEeCCCC----CceeeeeEeeeCCCC---CCCeEEEEEEc---
Q 005553 308 RLVSARMLP-----GETVELNFSKAPGLSYNPTSIMFINVPSIS----KLQWHPFTVTSSSNL---EPEKLSVVIKG--- 372 (691)
Q Consensus 308 ~v~s~~~l~-----~~~~~l~~~~~~~~~~~pGQ~v~L~~p~~s----~~q~HPFTIas~p~~---~~~~l~l~IK~--- 372 (691)
++++.+.+. +++.++++..+..++|.||||+.|.+|... ....|||||+|.+.. ++++++|.||.
T Consensus 94 ~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y 173 (367)
T PLN03115 94 RCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 173 (367)
T ss_pred EEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEe
Confidence 555555553 388999998777788999999999987432 235799999998742 24689999996
Q ss_pred --------CCchhHHHHHhhcCCCCCceeEEEEECCCCCCCC-CCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCC
Q 005553 373 --------EGSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVST-HFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCK 443 (691)
Q Consensus 373 --------~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~-~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~ 443 (691)
.|..|..|.+ ++.|+ .+.+.||+|.+.. +.+..++++|||||+||||+++++++++.+.......
T Consensus 174 ~~~~g~~~~G~~S~~L~~-Lk~Gd-----~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~ 247 (367)
T PLN03115 174 TNDQGEIVKGVCSNFLCD-LKPGA-----EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKF 247 (367)
T ss_pred ecCCCccCCeehHhhHhh-CCCcC-----EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccC
Confidence 3668888877 88888 7999999998732 2233468999999999999999999876543211111
Q ss_pred CCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC-CCccccccceeec-cc----C-CCCCCcee
Q 005553 444 TPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQP-TTDNSKLIRALWF-KP----L-ATDAPISS 516 (691)
Q Consensus 444 ~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~-~~~~~~~~~~~~~-~P----~-~~~~~~~~ 516 (691)
.+++.|+|++|+.+|+.+.|++.+.. .....+++++..++|+++. +...++..+.+.- .. . ..+.....
T Consensus 248 ~~~v~Lf~G~R~~~dlly~dELe~l~----~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vY 323 (367)
T PLN03115 248 NGLAWLFLGVPTSSSLLYKEEFEKMK----EKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVY 323 (367)
T ss_pred CCcEEEEEccCCHHHhhHHHHHHHHH----HhCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEE
Confidence 35799999999999999999986652 1223589999999987632 3333433332220 11 0 12346778
Q ss_pred eeCCCch
Q 005553 517 VLGPNRW 523 (691)
Q Consensus 517 v~gp~~~ 523 (691)
+|||++|
T Consensus 324 iCGp~~M 330 (367)
T PLN03115 324 MCGLKGM 330 (367)
T ss_pred EeCCHHH
Confidence 9999985
No 62
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.81 E-value=3.4e-19 Score=184.27 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=120.6
Q ss_pred CEEEEEEecC-CCCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC-------CchhHHHHHhhcCCCC
Q 005553 318 ETVELNFSKA-PGLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE-------GSWSKKLYQVLSSPSS 389 (691)
Q Consensus 318 ~~~~l~~~~~-~~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~-------Gg~T~~L~~~l~~g~~ 389 (691)
++.++++..+ +..+|+||||+.|.++. ..+.|||||+|.|. ++.++|.||.. |..|+.|.+.++.|+
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~--~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~~Gd- 91 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPA--DGALELLVRQVRHADGGLGLGSGWLTRHAPIGA- 91 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCC--CCEEEEEEEEeccCCCCCeeechhhhhCCCCCC-
Confidence 5888999876 56789999999999764 34779999999984 47899999985 448999998788887
Q ss_pred CceeEEEEECCCCC-CCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCC-chhHHHhhcc
Q 005553 390 IDRLDVSVEGPYGP-VSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSS-DLTMLDLLLP 467 (691)
Q Consensus 390 ~~~~~v~VeGPYG~-~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~-~l~~~d~l~~ 467 (691)
++.+.||.|. +.. ....++++|||||+||||++|+++++.... .+++.+++++|+.+ ++.+.+++.+
T Consensus 92 ----~v~i~gp~gg~F~~-~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~------~~~~~l~~g~r~~~~d~~~~~el~~ 160 (245)
T cd06200 92 ----SVALRLRENPGFHL-PDDGRPLILIGNGTGLAGLRSHLRARARAG------RHRNWLLFGERQAAHDFFCREELEA 160 (245)
T ss_pred ----EEEEEecCCCcccC-CCCCCCEEEEecCcChHHHHHHHHHHHhcc------CCCeEEEEecCCccccHhHHHHHHH
Confidence 7999998764 432 224578999999999999999999987542 24689999999984 8888888876
Q ss_pred cCCCCCCCCCCceEEEEEEeCCC
Q 005553 468 ISGTPTELPNLKLQIEAYVTREK 490 (691)
Q Consensus 468 ~~~~~~~~~~~~l~i~iyvTr~~ 490 (691)
.. ....+.+++..+++++
T Consensus 161 ~~-----~~~~~~~~~~~~s~~~ 178 (245)
T cd06200 161 WQ-----AAGHLARLDLAFSRDQ 178 (245)
T ss_pred HH-----HCCCcceEEEEEccCC
Confidence 53 2445677777888764
No 63
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.79 E-value=3.5e-21 Score=172.94 Aligned_cols=97 Identities=39% Similarity=0.817 Sum_probs=7.2
Q ss_pred eEEEEEEEEecCCEEEEEEecCCC-CccCCCCEEEEEeCCCC--CceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHH
Q 005553 306 AVRLVSARMLPGETVELNFSKAPG-LSYNPTSIMFINVPSIS--KLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQ 382 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~~~-~~~~pGQ~v~L~~p~~s--~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~ 382 (691)
++++++++.+++|+++++++++.. ++|+||||+||++|..+ .+|||||||+|.|. ++.++++||..||||++|++
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~g~~T~~L~~ 80 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKARGGWTKRLYE 80 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeCCCchHHHHH
Confidence 356778899999999999999876 89999999999999999 56999999999985 68999999999999999999
Q ss_pred hhcCC--CCCceeEEEEECCCCCC
Q 005553 383 VLSSP--SSIDRLDVSVEGPYGPV 404 (691)
Q Consensus 383 ~l~~g--~~~~~~~v~VeGPYG~~ 404 (691)
.+.+. +....+++.||||||.+
T Consensus 81 ~~~~~~~~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 81 HLSESPSKQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp ----------------TTSTTSHH
T ss_pred HHhhhcccCCCceEEEEECCCCCC
Confidence 87653 23346799999999974
No 64
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.79 E-value=4.4e-18 Score=188.17 Aligned_cols=203 Identities=15% Similarity=0.167 Sum_probs=142.6
Q ss_pred ceEEEEEEEEec-----CCEEEEEEecCC-CCccCCCCEEEEEeCCCC----CceeeeeEeeeCCCCCC---CeEEEEEE
Q 005553 305 RAVRLVSARMLP-----GETVELNFSKAP-GLSYNPTSIMFINVPSIS----KLQWHPFTVTSSSNLEP---EKLSVVIK 371 (691)
Q Consensus 305 ~~~~v~s~~~l~-----~~~~~l~~~~~~-~~~~~pGQ~v~L~~p~~s----~~q~HPFTIas~p~~~~---~~l~l~IK 371 (691)
...+|++.+.++ +++.+++++.+. .+.++||||+.|.+|... ....|||||+|.++.+. +.++|+||
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk 222 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVK 222 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEE
Confidence 456788888884 489999998755 477999999999988532 24579999999864221 47999999
Q ss_pred cC----------CchhHHHHHhhcCCCCCceeEEEEECCCCCCCC-CCCCCCEEEEEecCCCcccHHHHHHHHHHhcccC
Q 005553 372 GE----------GSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVST-HFLRHDTLVMVSGGSGITPFISVIRELMYASTVT 440 (691)
Q Consensus 372 ~~----------Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~-~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~ 440 (691)
.. |..|+.|.+ ++.|+ ++.+.||||.... +....++++|||||+||||++++++++......
T Consensus 223 ~v~~~~~g~~~~G~~S~~L~~-lk~Gd-----~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~- 295 (411)
T TIGR03224 223 RVTTDHQGNAVRGVASNYLCD-LKKGD-----KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDH- 295 (411)
T ss_pred EEEecCCCCcCcccchhHHhc-CCCcC-----EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhc-
Confidence 74 778999988 88888 7999999998532 222346899999999999999999998764211
Q ss_pred CCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceeec-cc-----CCCCCCc
Q 005553 441 KCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALWF-KP-----LATDAPI 514 (691)
Q Consensus 441 ~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~-~P-----~~~~~~~ 514 (691)
...+++.|+|++|+.+++.+.+++.++. ...++++..++++++. ..+...+.+.- .+ ...+...
T Consensus 296 -~~~~~v~L~~G~Rt~~dl~y~~eL~~l~-------~~~~~~~~~~sr~~~~--~~g~V~d~l~~~~~~v~~ll~~~~~~ 365 (411)
T TIGR03224 296 -GEGGKLMLFFGARTKEELPYFGPLQKLP-------KDFIDINFAFSRTPEQ--PKRYVQDAIRERAADVAALLKDPNTY 365 (411)
T ss_pred -CCCCCEEEEEecCccccchHHHHHHHHH-------hcCceEEEEeccCCcc--CcccHhhHHHHhHHHHHHHHhcCCcE
Confidence 1246899999999999999999886542 1234556666765321 22222211110 00 0012355
Q ss_pred eeeeCCCchh
Q 005553 515 SSVLGPNRWL 524 (691)
Q Consensus 515 ~~v~gp~~~~ 524 (691)
..+|||++|.
T Consensus 366 vYiCGp~~M~ 375 (411)
T TIGR03224 366 IYICGLKGME 375 (411)
T ss_pred EEEECCHHHH
Confidence 7899999853
No 65
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.78 E-value=4.3e-18 Score=180.22 Aligned_cols=193 Identities=19% Similarity=0.193 Sum_probs=139.2
Q ss_pred cceEEEEEEEEec----CCEEEEEEecCC-------CCccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEc
Q 005553 304 RRAVRLVSARMLP----GETVELNFSKAP-------GLSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKG 372 (691)
Q Consensus 304 ~~~~~v~s~~~l~----~~~~~l~~~~~~-------~~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~ 372 (691)
...+++++.+.++ +++..+++..+. ...|+||||+.|..++. ...|||||+|.|. ++.++|.||.
T Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~--~~~R~YSias~p~--~g~l~l~Vk~ 120 (289)
T cd06201 45 TKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS--DVPRFYSLASSSS--DGFLEICVRK 120 (289)
T ss_pred ccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC--CCCceEecCCCCC--CCeEEEEEEe
Confidence 4567888888887 589999998765 35699999999986643 2579999999873 5789999997
Q ss_pred --CCchhHHHHHhhcCCCCCceeEEEEE-CCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEE
Q 005553 373 --EGSWSKKLYQVLSSPSSIDRLDVSVE-GPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVIL 449 (691)
Q Consensus 373 --~Gg~T~~L~~~l~~g~~~~~~~v~Ve-GPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~L 449 (691)
.|..|+.|.+ ++.|+ ++.+. +|+|.+..+ ...++++|||||+||||+++++++.. ..++++|
T Consensus 121 ~~~G~~S~~L~~-l~~Gd-----~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~--------~~~~v~L 185 (289)
T cd06201 121 HPGGLCSGYLHG-LKPGD-----TIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANA--------ARRPMHL 185 (289)
T ss_pred CCCccchhhHhh-CCCcC-----EEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhh--------ccCCEEE
Confidence 6889999986 88887 56666 578887532 44678999999999999999998752 1357999
Q ss_pred EEEeCCCC-chhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceee-----cccCCCCCCceeeeCCCch
Q 005553 450 ICSFKNSS-DLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALW-----FKPLATDAPISSVLGPNRW 523 (691)
Q Consensus 450 iw~vR~~~-~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~-----~~P~~~~~~~~~v~gp~~~ 523 (691)
+|++|+.+ |+.+.+++.+.. ....+++++..++++... +...+.+. ......+.....+|||++|
T Consensus 186 ~~g~r~~~~d~~~~~eL~~l~-----~~~~~~~~~~~~s~~~~~----g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~~M 256 (289)
T cd06201 186 YWGGRDPASDFLYEDELDQYL-----ADGRLTQLHTAFSRTPDG----AYVQDRLRADAERLRRLIEDGAQIMVCGSRAM 256 (289)
T ss_pred EEEecCcccchHHHHHHHHHH-----HcCCCceEEEEECCCCCc----ccchhHHHHhHHHHHHHHHCCcEEEEECCHHH
Confidence 99999985 888888886653 234466777777765321 11111000 0000113456789999984
Q ss_pred h
Q 005553 524 L 524 (691)
Q Consensus 524 ~ 524 (691)
.
T Consensus 257 ~ 257 (289)
T cd06201 257 A 257 (289)
T ss_pred H
Confidence 3
No 66
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.76 E-value=9.1e-18 Score=199.75 Aligned_cols=145 Identities=21% Similarity=0.338 Sum_probs=123.7
Q ss_pred EEEEEEEEecCCEEEEEEecCCC-CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhc
Q 005553 307 VRLVSARMLPGETVELNFSKAPG-LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLS 385 (691)
Q Consensus 307 ~~v~s~~~l~~~~~~l~~~~~~~-~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~ 385 (691)
+++++.+.+++++..+++..|.. ..++||||+.|+++..+ +.|||||++.+. +++.++|.||..|..|+.|.+ ++
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~-~~g~i~~~vk~vG~~T~~L~~-l~ 77 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADP-EKGTITLVIQEVGLSTTKLCE-LN 77 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCC-CCCEEEEEEEEcCchHHHHhc-CC
Confidence 46788899999999999986543 46899999999997544 579999999875 578999999999999999985 88
Q ss_pred CCCCCceeEE-EEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHh
Q 005553 386 SPSSIDRLDV-SVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDL 464 (691)
Q Consensus 386 ~g~~~~~~~v-~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~ 464 (691)
.|+ .+ .|.||||.+.. ....++++|||||+||||++++++++.+++ .+++++|++|+.+++.+.|+
T Consensus 78 ~Gd-----~v~~v~GP~G~~~~-~~~~~~~llvaGG~GiaPl~~l~~~l~~~~-------~~v~l~~g~r~~~~l~~~~e 144 (752)
T PRK12778 78 EGD-----YITDVVGPLGNPSE-IENYGTVVCAGGGVGVAPMLPIVKALKAAG-------NRVITILGGRSKELIILEDE 144 (752)
T ss_pred CCC-----EeCeEeCCCCCCcc-CCCCCeEEEEECCEeHHHHHHHHHHHHHCC-------CeEEEEeccCCHHHhhhHHH
Confidence 887 78 79999999854 344579999999999999999999987642 37999999999999999998
Q ss_pred hccc
Q 005553 465 LLPI 468 (691)
Q Consensus 465 l~~~ 468 (691)
+.+.
T Consensus 145 l~~~ 148 (752)
T PRK12778 145 MRES 148 (752)
T ss_pred HHhh
Confidence 8654
No 67
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.74 E-value=2.1e-17 Score=152.40 Aligned_cols=119 Identities=32% Similarity=0.567 Sum_probs=101.5
Q ss_pred HhHHHHHHHHHHHHhhcCcccchhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHHHHhhccch
Q 005553 153 FGLVGNICLTLLFFPVARGSSVLPLFGLTSEASIKYHIWLGHMVMTLFTAHGVCYIIFWAVTNNI--SEMLQWAKIGISN 230 (691)
Q Consensus 153 ~G~la~~~l~~l~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~--~~~~~w~~~~~~~ 230 (691)
+|.+|.+++++++++++|||++...+|+++|+.+.+|||+|+++++++++|++.+...+...+.. .........+..+
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYN 80 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHH
Confidence 48999999999999999999999999999999999999999999999999999999877654321 1111123345667
Q ss_pred hhHHHHHHHHHHHHHhccchhh-hchhhHHHHHHHhHHHHHH
Q 005553 231 VAGELALLSGLAMWATTFPPIR-RKFFELFFYTHYLYILFVV 271 (691)
Q Consensus 231 ~~G~ial~~l~~l~~~Sl~~iR-r~~YE~F~~~H~l~~~~lv 271 (691)
.+|+++++++++|.++|.+++| |+.||.|+++|++++++++
T Consensus 81 ~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~~~H~~~~~~~~ 122 (125)
T PF01794_consen 81 LTGIIALLLLLILAVTSFPWIRRRRNYEIFYYLHILFYIAFL 122 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999 8999999999998755443
No 68
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.72 E-value=1e-16 Score=194.60 Aligned_cols=145 Identities=17% Similarity=0.263 Sum_probs=123.1
Q ss_pred EEEEEEEEecCCEEEEEEecCCC-CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHhhc
Q 005553 307 VRLVSARMLPGETVELNFSKAPG-LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQVLS 385 (691)
Q Consensus 307 ~~v~s~~~l~~~~~~l~~~~~~~-~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~l~ 385 (691)
.++++.+.+++++..+++..|.. ..++||||+.|+++..+ +.+||||++.+. +++.+++.+|..|+.|+.|++.++
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~-~~g~i~l~vk~vG~~T~~L~~~lk 78 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDR-KKGTITMVVQALGKTTREMMTKFK 78 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCC-CCCEEEEEEEecCcHHHHHHhcCC
Confidence 36788899999999999987653 45999999999997543 579999998764 578999999999999999988899
Q ss_pred CCCCCceeEE-EEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHh
Q 005553 386 SPSSIDRLDV-SVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDL 464 (691)
Q Consensus 386 ~g~~~~~~~v-~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~ 464 (691)
.|+ .+ .+.||+|.+.. ....++++|||||+||||++++++++.+.+ .+++++|+.|+.+++.+.++
T Consensus 79 ~Gd-----~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~g-------~~v~li~g~R~~~~l~~~de 145 (1006)
T PRK12775 79 AGD-----TFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEAG-------ARTTGIIGFRNKDLVFWEDK 145 (1006)
T ss_pred CCC-----EEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhCC-------CcEEEEEeCCChHHcccHHH
Confidence 998 56 79999998743 345679999999999999999999987543 36999999999999988888
Q ss_pred hcc
Q 005553 465 LLP 467 (691)
Q Consensus 465 l~~ 467 (691)
+..
T Consensus 146 l~~ 148 (1006)
T PRK12775 146 FGK 148 (1006)
T ss_pred HHh
Confidence 854
No 69
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.71 E-value=1.1e-16 Score=164.51 Aligned_cols=184 Identities=11% Similarity=0.088 Sum_probs=131.2
Q ss_pred EEEEEecCCEEEEEEecCCC---CccCCCCEEEEEeCCCC-------------------CceeeeeEeeeCCCCCCCeEE
Q 005553 310 VSARMLPGETVELNFSKAPG---LSYNPTSIMFINVPSIS-------------------KLQWHPFTVTSSSNLEPEKLS 367 (691)
Q Consensus 310 ~s~~~l~~~~~~l~~~~~~~---~~~~pGQ~v~L~~p~~s-------------------~~q~HPFTIas~p~~~~~~l~ 367 (691)
++++.+++++.+++++.+.. ..+.||||+.|.+|..+ ....|+||+++.+. ++++++
T Consensus 2 ~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~-~~~~l~ 80 (235)
T cd06193 2 VRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP-EAGELD 80 (235)
T ss_pred ceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-CCCEEE
Confidence 46788999999999987654 56899999999997643 45789999999875 568899
Q ss_pred EEEEcC---CchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCC
Q 005553 368 VVIKGE---GSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKT 444 (691)
Q Consensus 368 l~IK~~---Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~ 444 (691)
|.||.. |..|+.+. .++.|+ ++.+.||+|.+... ...++++|||||+||||++++++++.. .
T Consensus 81 ~~v~~~~~~G~~s~~l~-~l~~Gd-----~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~~il~~~~~--------~ 145 (235)
T cd06193 81 IDFVLHGDEGPASRWAA-SAQPGD-----TLGIAGPGGSFLPP-PDADWYLLAGDETALPAIAAILEELPA--------D 145 (235)
T ss_pred EEEEeCCCCCchHHHHh-hCCCCC-----EEEEECCCCCCCCC-CCcceEEEEeccchHHHHHHHHHhCCC--------C
Confidence 999775 55788875 588888 89999999998543 356799999999999999999998742 1
Q ss_pred CeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCCCccccccceeecccCCCCCCceeeeCCCchh
Q 005553 445 PQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPTTDNSKLIRALWFKPLATDAPISSVLGPNRWL 524 (691)
Q Consensus 445 ~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~gp~~~~ 524 (691)
.++++++++|+.+|+..+++ ..+++++..++++.+ ....+..... . .+.+.+....-+|||++|.
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~------------~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~vyicGp~~mv 210 (235)
T cd06193 146 ARGTALIEVPDAADEQPLPA------------PAGVEVTWLHRGGAE-AGELALLAVR-A-LAPPAGDGYVWIAGEAGAV 210 (235)
T ss_pred CeEEEEEEECCHHHccccCC------------CCCcEEEEEeCCCCC-cchhHHHHHh-c-ccCCCCCeEEEEEccHHHH
Confidence 48999999999855432111 125666655554322 2222111011 1 1112233466799999953
No 70
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.71 E-value=1.3e-16 Score=196.88 Aligned_cols=208 Identities=16% Similarity=0.168 Sum_probs=149.4
Q ss_pred cceEEEEEEE---EecCCEEEEEEecCCC---CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEc-CCch
Q 005553 304 RRAVRLVSAR---MLPGETVELNFSKAPG---LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKG-EGSW 376 (691)
Q Consensus 304 ~~~~~v~s~~---~l~~~~~~l~~~~~~~---~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~-~Gg~ 376 (691)
+.++++.+++ ..++++..++|..|.. ..++||||+.|+++..+.-..++||++|.|+ +++.++|.||. .|..
T Consensus 914 w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr~~~G~~ 992 (1167)
T PTZ00306 914 WTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILARGDKGTL 992 (1167)
T ss_pred eEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEEcCCChh
Confidence 4567777776 4578988888876643 3599999999998643333579999999986 56789999998 4779
Q ss_pred hHHHHHhhcCCCCCceeEEEEECCCCCCC----------CCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCe
Q 005553 377 SKKLYQVLSSPSSIDRLDVSVEGPYGPVS----------THFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQ 446 (691)
Q Consensus 377 T~~L~~~l~~g~~~~~~~v~VeGPYG~~~----------~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~ 446 (691)
|..|. .++.|+ ++.|.||+|... .+....++++|||||+||||+++++++++++.+. ...++
T Consensus 993 S~~L~-~l~~Gd-----~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~--~~~~~ 1064 (1167)
T PTZ00306 993 KEWIS-ALRPGD-----SVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYV--DSIES 1064 (1167)
T ss_pred HHHHh-hCCCCC-----EEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCccc--CCCce
Confidence 99995 588888 799999988421 1123457899999999999999999998865310 12458
Q ss_pred EEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC-CCccccccceee--cccCCCCCCceeeeCCCch
Q 005553 447 VILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQP-TTDNSKLIRALW--FKPLATDAPISSVLGPNRW 523 (691)
Q Consensus 447 V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~-~~~~~~~~~~~~--~~P~~~~~~~~~v~gp~~~ 523 (691)
++|+|++|+.+++.+.+++.++. ...+.+++++..++++++. ....+...+... +-|.+.......+|||+.|
T Consensus 1065 i~Llyg~r~~~dl~~~~eL~~l~----~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCGP~~m 1140 (1167)
T PTZ00306 1065 IRLIYAAEDVSELTYRELLESYR----KENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICGPPVM 1140 (1167)
T ss_pred EEEEEEeCCHHHhhHHHHHHHHH----HHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeCCHHH
Confidence 99999999999999999887653 1223468998888875432 222343333221 1233334566789999995
Q ss_pred h
Q 005553 524 L 524 (691)
Q Consensus 524 ~ 524 (691)
.
T Consensus 1141 v 1141 (1167)
T PTZ00306 1141 Q 1141 (1167)
T ss_pred H
Confidence 3
No 71
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.69 E-value=2.4e-16 Score=189.88 Aligned_cols=145 Identities=20% Similarity=0.271 Sum_probs=118.2
Q ss_pred ceEEEEEEEEecCCEEEEEEecCCC-CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHHHh
Q 005553 305 RAVRLVSARMLPGETVELNFSKAPG-LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLYQV 383 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~~-~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~ 383 (691)
...++++++.+++++..+++..+.. ..++||||+.|+++..+ +.|||||++.+. +++.+++.||..|..|+.|. .
T Consensus 649 ~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~-~~g~i~l~Vk~vG~~T~~L~-~ 724 (944)
T PRK12779 649 IPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDA-EKGTIDLVVQGMGTSSLEIN-R 724 (944)
T ss_pred eEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCC-CCCEEEEEEEeeccHHHHHh-c
Confidence 4678889999999999999987654 36899999999986444 569999999875 56889999999998887664 5
Q ss_pred hcCCCCCceeEE-EEECCCCCCCCCC--CCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchh
Q 005553 384 LSSPSSIDRLDV-SVEGPYGPVSTHF--LRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLT 460 (691)
Q Consensus 384 l~~g~~~~~~~v-~VeGPYG~~~~~~--~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~ 460 (691)
++.|+ ++ .|.||+|.+.... ...++++|||||+||||++++++++.+++ .+|+++|++|+.+++.
T Consensus 725 lk~Gd-----~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g-------~~V~li~G~Rs~edl~ 792 (944)
T PRK12779 725 MAIGD-----AFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG-------NHVTLISGFRAKEFLF 792 (944)
T ss_pred CCCcC-----EEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-------CCEEEEEEeCCHHHhh
Confidence 88887 68 4999999974211 12368999999999999999999987542 4799999999999888
Q ss_pred HHHhh
Q 005553 461 MLDLL 465 (691)
Q Consensus 461 ~~d~l 465 (691)
+.+++
T Consensus 793 ~~del 797 (944)
T PRK12779 793 WTGDD 797 (944)
T ss_pred hHHHH
Confidence 76554
No 72
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.45 E-value=1.6e-13 Score=149.71 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=110.1
Q ss_pred CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEc----------CCchhHHHHHhhcCCCCCceeEEEEEC
Q 005553 330 LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKG----------EGSWSKKLYQVLSSPSSIDRLDVSVEG 399 (691)
Q Consensus 330 ~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~----------~Gg~T~~L~~~l~~g~~~~~~~v~VeG 399 (691)
.++.|||++.+..| .+.|+|||+|+|...++.+++.||. .|..|..|.+.++.|+ ++.+.+
T Consensus 130 ~~~~~gq~l~l~~~----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd-----~v~v~~ 200 (360)
T cd06199 130 ARLTAEELLDLLRP----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGD-----TVPVFV 200 (360)
T ss_pred CCCCHHHHHHhCcC----CCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCC-----EEEEEE
Confidence 56789999988754 2679999999996546789998874 4788999988777777 688887
Q ss_pred CC-CCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCC-CchhHHHhhcccCCCCCCCCC
Q 005553 400 PY-GPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNS-SDLTMLDLLLPISGTPTELPN 477 (691)
Q Consensus 400 PY-G~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~-~~l~~~d~l~~~~~~~~~~~~ 477 (691)
|. |.+..+.....+++|||||+||||++|++++...... ..++.|+|++|+. +|+.+.+++.+.. ...
T Consensus 201 ~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~-----~~~~~L~~G~R~~~~D~~y~~el~~~~-----~~~ 270 (360)
T cd06199 201 QPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA-----KGKNWLFFGERHFATDFLYQDELQQWL-----KDG 270 (360)
T ss_pred ecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC-----CCcEEEEEcCCCCccchhHHHHHHHHH-----HcC
Confidence 55 4564333345799999999999999999998765432 3579999999997 6898888887653 234
Q ss_pred CceEEEEEEeCCCC
Q 005553 478 LKLQIEAYVTREKQ 491 (691)
Q Consensus 478 ~~l~i~iyvTr~~~ 491 (691)
.+++++...+|+++
T Consensus 271 ~~~~~~~a~Sr~~~ 284 (360)
T cd06199 271 VLTRLDTAFSRDQA 284 (360)
T ss_pred CCeEEEEEEccCCC
Confidence 56778888888653
No 73
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.44 E-value=3e-13 Score=148.99 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=119.1
Q ss_pred cCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEc------------CCchhHHHHHhhcCCCCCceeEEEEEC
Q 005553 332 YNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKG------------EGSWSKKLYQVLSSPSSIDRLDVSVEG 399 (691)
Q Consensus 332 ~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~------------~Gg~T~~L~~~l~~g~~~~~~~v~VeG 399 (691)
...||++.+. |. .+.|||||+|+|..+++.+++.|+. .|..|+.|. .++.|+ .+.+.+.|
T Consensus 147 ~~~~~~l~~~-p~---l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~-~l~~Gd---~v~v~i~~ 218 (384)
T cd06206 147 LPLATFLAML-PP---MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLS-SLRPGD---SIHVSVRP 218 (384)
T ss_pred CCHHHHHHhC-cc---cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHh-hCCCCC---eEEEEEec
Confidence 3558877776 43 3779999999986445666666654 466888886 488877 45666789
Q ss_pred CCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCC-CchhHHHhhcccCCCCCCCCCC
Q 005553 400 PYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNS-SDLTMLDLLLPISGTPTELPNL 478 (691)
Q Consensus 400 PYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~-~~l~~~d~l~~~~~~~~~~~~~ 478 (691)
|+|.+..+....++++|||||+||||+++++++......++ ....++.|++++|+. +|+.+.+++.+.. ...
T Consensus 219 p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~v~L~~G~R~~~~d~ly~~el~~~~------~~~ 291 (384)
T cd06206 219 SHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQG-RKLAPALLFFGCRHPDHDDLYRDELEEWE------AAG 291 (384)
T ss_pred CCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcC-CCcCCEEEEEeCCCCCcccchHHHHHHHH------HCC
Confidence 99998544445678999999999999999999876542211 123579999999999 7898988887653 235
Q ss_pred ceEEEEEEeCCCCCCCccccccceeec-c----cCCCCCCceeeeCCCch
Q 005553 479 KLQIEAYVTREKQPTTDNSKLIRALWF-K----PLATDAPISSVLGPNRW 523 (691)
Q Consensus 479 ~l~i~iyvTr~~~~~~~~~~~~~~~~~-~----P~~~~~~~~~v~gp~~~ 523 (691)
++++...++|+++. ..+...+.+.- . ....+.+...+|||++|
T Consensus 292 ~~~l~~a~Sr~~~~--~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~M 339 (384)
T cd06206 292 VVSVRRAYSRPPGG--GCRYVQDRLWAEREEVWELWEQGARVYVCGDGRM 339 (384)
T ss_pred CeEEEEEecccCCC--CCEechhhHHhhHHHHHHHHHCCcEEEEECCCch
Confidence 68888888886432 11221111100 0 00113455679999994
No 74
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.41 E-value=8.8e-13 Score=145.18 Aligned_cols=133 Identities=16% Similarity=0.181 Sum_probs=103.3
Q ss_pred CceeeeeEeeeCCCCCCCeEEEEEEcC-----------CchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEE
Q 005553 347 KLQWHPFTVTSSSNLEPEKLSVVIKGE-----------GSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLV 415 (691)
Q Consensus 347 ~~q~HPFTIas~p~~~~~~l~l~IK~~-----------Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vv 415 (691)
..+.|||||+|+|..+++.+++.||.. |-.|+.|.+ ++.|+ ++.+.||+|.+..+.+...+++
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~Gd-----~v~v~~p~g~F~lp~~~~~plI 234 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAG-LKVGQ-----RVTVFIKKSSFKLPKDPKKPII 234 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhh-cCCCC-----EEEEEEECCcccCCCCCCCCEE
Confidence 458899999999975568899999853 778888875 78887 7899999998754333457899
Q ss_pred EEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCC-CchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCC
Q 005553 416 MVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNS-SDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQ 491 (691)
Q Consensus 416 lVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~-~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~ 491 (691)
|||||+||||+++++++.....++ ....+++.|+|++|+. +|+.+.+++.+.. ....+++++...+|+++
T Consensus 235 mIa~GtGIAP~rs~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~~y~~el~~~~-----~~~~~~~~~~a~Srd~~ 305 (382)
T cd06207 235 MVGPGTGLAPFRAFLQERAALLAQ-GPEIGPVLLYFGCRHEDKDYLYKEELEEYE-----KSGVLTTLGTAFSRDQP 305 (382)
T ss_pred EEcCCccHHHHHHHHHHHHHHhhc-CccCCCEEEEECCCCCCccccHHHHHHHHH-----hCCCCceEEEEecCCCC
Confidence 999999999999999987654211 1235689999999998 8988888887653 23456788888888653
No 75
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.40 E-value=3.8e-13 Score=155.63 Aligned_cols=141 Identities=13% Similarity=0.146 Sum_probs=109.0
Q ss_pred CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEc----------CCchhHHHHHhhcCCCCCceeEEEEEC
Q 005553 330 LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKG----------EGSWSKKLYQVLSSPSSIDRLDVSVEG 399 (691)
Q Consensus 330 ~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~----------~Gg~T~~L~~~l~~g~~~~~~~v~VeG 399 (691)
.++.|||++.+..| .+.|||||+|+|...++.+++.||. .|..|..|.+.++.|+ ++.+.|
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd-----~v~v~~ 437 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGD-----TVPVYI 437 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCC-----EEEEEE
Confidence 56899999988865 3679999999986556789999884 4889999998888887 677887
Q ss_pred CCC-CCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCC-CCchhHHHhhcccCCCCCCCCC
Q 005553 400 PYG-PVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKN-SSDLTMLDLLLPISGTPTELPN 477 (691)
Q Consensus 400 PYG-~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~-~~~l~~~d~l~~~~~~~~~~~~ 477 (691)
|.| .+..+.+...+++|||||+||||+++++++...+.. .+++.|+|++|+ .+|+.+.+++..... ..
T Consensus 438 ~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~-----~g~~~LffG~R~~~~D~ly~~El~~~~~-----~~ 507 (597)
T TIGR01931 438 EPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA-----KGKNWLFFGNPHFTTDFLYQVEWQNYLK-----KG 507 (597)
T ss_pred eeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccC-----CCCEEEEECCCCCCcchhHHHHHHHHHH-----cC
Confidence 554 564333445689999999999999999998876532 357999999999 778888888865531 22
Q ss_pred CceEEEEEEeCC
Q 005553 478 LKLQIEAYVTRE 489 (691)
Q Consensus 478 ~~l~i~iyvTr~ 489 (691)
...+++...+|+
T Consensus 508 ~l~~l~~afSRd 519 (597)
T TIGR01931 508 VLTKMDLAFSRD 519 (597)
T ss_pred CCceeEEEEecC
Confidence 344566777774
No 76
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.34 E-value=1e-11 Score=137.39 Aligned_cols=166 Identities=16% Similarity=0.141 Sum_probs=112.6
Q ss_pred CceeeeeEeeeCCCCCCCeEEEEEEcC-----CchhHHHHHhhc----CCCCCceeEEEEEC-CCCCCCCCCC-CCCEEE
Q 005553 347 KLQWHPFTVTSSSNLEPEKLSVVIKGE-----GSWSKKLYQVLS----SPSSIDRLDVSVEG-PYGPVSTHFL-RHDTLV 415 (691)
Q Consensus 347 ~~q~HPFTIas~p~~~~~~l~l~IK~~-----Gg~T~~L~~~l~----~g~~~~~~~v~VeG-PYG~~~~~~~-~~~~vv 415 (691)
..+.|+|||+|+|...++.+++.||.. |..|+.|.+..+ .|+ ++.+.| |.|.+..+.. ...+++
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~-----~v~i~~~~~g~F~lp~~~~~~piI 245 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGV-----KVPFYLRSSSRFRLPPDDLRRPII 245 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCC-----EEEEEEecCCCcCCCCcCCCCCEE
Confidence 457899999999864468899988773 668888887554 666 688888 6777644333 357899
Q ss_pred EEecCCCcccHHHHHHHHHHhccc-CCCCCCeEEEEEEeCCC-CchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCC
Q 005553 416 MVSGGSGITPFISVIRELMYASTV-TKCKTPQVILICSFKNS-SDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPT 493 (691)
Q Consensus 416 lVAGG~GITp~lsil~~L~~~~~~-~~~~~~~V~Liw~vR~~-~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~ 493 (691)
|||||+||||+.+++++....... ......++.|+|++|+. +|..+.+++.+.. ......++....+|+++..
T Consensus 246 mIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~-----~~~~~~~~~~a~SRd~~~~ 320 (398)
T cd06203 246 MVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFL-----EEGILTRLIVAFSRDENDG 320 (398)
T ss_pred EEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHH-----HcCCCceEEEEECCCCCCC
Confidence 999999999999999987653210 01234679999999999 6888889887653 2344556788888875432
Q ss_pred Cccccccceeec-ccC-----CCCCCceeeeCCCc
Q 005553 494 TDNSKLIRALWF-KPL-----ATDAPISSVLGPNR 522 (691)
Q Consensus 494 ~~~~~~~~~~~~-~P~-----~~~~~~~~v~gp~~ 522 (691)
..+++..+.+.- ++. ........+|||+.
T Consensus 321 g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~ 355 (398)
T cd06203 321 STPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAK 355 (398)
T ss_pred CCceecchHHHhCHHHHHHHHhcCCcEEEEECCcc
Confidence 223333222211 110 01335567999965
No 77
>PRK06214 sulfite reductase; Provisional
Probab=99.30 E-value=2.1e-11 Score=138.17 Aligned_cols=130 Identities=21% Similarity=0.284 Sum_probs=98.5
Q ss_pred CceeeeeEeeeCCCCCCCeEEEEEEc----------CCchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEE
Q 005553 347 KLQWHPFTVTSSSNLEPEKLSVVIKG----------EGSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVM 416 (691)
Q Consensus 347 ~~q~HPFTIas~p~~~~~~l~l~IK~----------~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvl 416 (691)
..+.|||||+|+|..+++.+++.||. .|..|..|.+.++.|+ .+.+.+.+|+| +..+.+...+++|
T Consensus 313 ~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd---~V~v~i~~~~g-F~lp~~~~~PiIm 388 (530)
T PRK06214 313 PLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGT---RVRVYVQKAHG-FALPADPNTPIIM 388 (530)
T ss_pred CCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCC---EEEEEecCCCC-CccCCCCCCCEEE
Confidence 45889999999986557899999975 3778899988888887 55677777887 6433334568999
Q ss_pred EecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCC-CCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCC
Q 005553 417 VSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKN-SSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREK 490 (691)
Q Consensus 417 VAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~-~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~ 490 (691)
||||+||||+++++++...... ..++.|+|++|+ .+|..+.|++.+.. ......+++...+|+.
T Consensus 389 Ig~GTGIAPfrsfLq~r~~~~~-----~g~~~LffG~R~~~~D~ly~dEL~~l~-----~~g~l~~l~~afSRd~ 453 (530)
T PRK06214 389 VGPGTGIAPFRAFLHERAATKA-----PGRNWLFFGHQRSATDFFYEDELNGLK-----AAGVLTRLSLAWSRDG 453 (530)
T ss_pred EcCCeeHHHHHHHHHHHHHhcC-----CCCeEEEEEecCChhhhHHHHHHHHHH-----HhCCceEEEEEEecCC
Confidence 9999999999999998765432 357899999965 56888888886653 2334556777788764
No 78
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.30 E-value=1.7e-11 Score=108.59 Aligned_cols=91 Identities=26% Similarity=0.426 Sum_probs=76.9
Q ss_pred EEEEEEEEecCCEEEEEEecCCC---CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEcC--CchhHHHH
Q 005553 307 VRLVSARMLPGETVELNFSKAPG---LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKGE--GSWSKKLY 381 (691)
Q Consensus 307 ~~v~s~~~l~~~~~~l~~~~~~~---~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~ 381 (691)
+++++++.+++++..+++..+.. ..+.||||+.|+++..+...+||||++|.++ +++.++|.||.. |..|+.|.
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEECTTSHHHHHHH
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEeccCCHHHHHHH
Confidence 57889999999999998876632 5699999999999955556789999999986 677999999997 88999995
Q ss_pred HhhcCCCCCceeEEEEECCCCCC
Q 005553 382 QVLSSPSSIDRLDVSVEGPYGPV 404 (691)
Q Consensus 382 ~~l~~g~~~~~~~v~VeGPYG~~ 404 (691)
+ ++.|+ ++.++||+|.+
T Consensus 81 ~-l~~Gd-----~v~i~gP~G~f 97 (99)
T PF00970_consen 81 Q-LKPGD-----EVEIRGPYGNF 97 (99)
T ss_dssp T-SCTTS-----EEEEEEEESSE
T ss_pred h-CCCCC-----EEEEEEccccc
Confidence 5 89998 89999999986
No 79
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.24 E-value=4.7e-11 Score=132.79 Aligned_cols=134 Identities=19% Similarity=0.231 Sum_probs=99.5
Q ss_pred CceeeeeEeeeCCCCCCCeEEEEEEcC-----------CchhHHHHHhhc--------------------CCCCCceeEE
Q 005553 347 KLQWHPFTVTSSSNLEPEKLSVVIKGE-----------GSWSKKLYQVLS--------------------SPSSIDRLDV 395 (691)
Q Consensus 347 ~~q~HPFTIas~p~~~~~~l~l~IK~~-----------Gg~T~~L~~~l~--------------------~g~~~~~~~v 395 (691)
..+.|+|||+|+|..+++.+++.||.. |-.|..|.+..+ .|+ .+
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~v 249 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGS-----KV 249 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCC-----eE
Confidence 458899999999975678898888742 667888887554 344 56
Q ss_pred EEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCC-CchhHHHhhcccCCCCCC
Q 005553 396 SVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNS-SDLTMLDLLLPISGTPTE 474 (691)
Q Consensus 396 ~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~-~~l~~~d~l~~~~~~~~~ 474 (691)
.+.+|.|.+..+.....+++|||||+||||+++++++.....+.+ ....++.|+|++|+. +|+.+.+++.+..
T Consensus 250 ~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~v~L~~G~R~~~~d~ly~~el~~~~----- 323 (416)
T cd06204 250 PVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESG-KKVGPTLLFFGCRHPDEDFIYKDELEEYA----- 323 (416)
T ss_pred EEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhcc-CccCCEEEEEcCCCCCcccchHHHHHHHH-----
Confidence 777788887543344579999999999999999999865432211 124579999999998 7888888887653
Q ss_pred CCCCceEEEEEEeCCCC
Q 005553 475 LPNLKLQIEAYVTREKQ 491 (691)
Q Consensus 475 ~~~~~l~i~iyvTr~~~ 491 (691)
....+++++...+|+++
T Consensus 324 ~~~~~~~l~~a~Sr~~~ 340 (416)
T cd06204 324 KLGGLLELVTAFSREQP 340 (416)
T ss_pred HcCCceEEEEEECcCCC
Confidence 23457888888888643
No 80
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.24 E-value=2.9e-11 Score=122.17 Aligned_cols=184 Identities=14% Similarity=0.246 Sum_probs=135.8
Q ss_pred EEEEec--CCCCccCCCCEEEEEeCCC--------------CCc---------------eeeeeEeeeCCCCCCCeEEEE
Q 005553 321 ELNFSK--APGLSYNPTSIMFINVPSI--------------SKL---------------QWHPFTVTSSSNLEPEKLSVV 369 (691)
Q Consensus 321 ~l~~~~--~~~~~~~pGQ~v~L~~p~~--------------s~~---------------q~HPFTIas~p~~~~~~l~l~ 369 (691)
++.+.- .+..+++||.|+.+..|.- +.| ..+.||.+|.|. |.+.+.|-
T Consensus 151 EL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPe-E~giI~~N 229 (410)
T COG2871 151 ELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPE-EKGIIKLN 229 (410)
T ss_pred hheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChh-hcCeEEEE
Confidence 444443 3457799999999998731 001 125689999886 77888888
Q ss_pred EEcC-----------CchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcc
Q 005553 370 IKGE-----------GSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYAST 438 (691)
Q Consensus 370 IK~~-----------Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~ 438 (691)
||.. |-.++.++. ++.|| +|.|.||||.+.. -+....+|||.||.|.+|+.|.+-|++.+-.
T Consensus 230 vRIAtPPp~~~~~PpG~mSSyi~s-LKpGD-----KvtisGPfGEfFa-KdtdaemvFigGGAGmapmRSHIfDqL~rlh 302 (410)
T COG2871 230 VRIATPPPRNPDAPPGQMSSYIWS-LKPGD-----KVTISGPFGEFFA-KDTDAEMVFIGGGAGMAPMRSHIFDQLKRLH 302 (410)
T ss_pred EEeccCCCCCCCCCccceeeeEEe-ecCCC-----eEEEeccchhhhh-ccCCCceEEEecCcCcCchHHHHHHHHHhhc
Confidence 8862 667777776 77887 8999999999843 3456789999999999999999999887754
Q ss_pred cCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCCC---ccccccceee-----cccCCC
Q 005553 439 VTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPTT---DNSKLIRALW-----FKPLAT 510 (691)
Q Consensus 439 ~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~---~~~~~~~~~~-----~~P~~~ 510 (691)
.+|++.+-|+.|+..+..+.+++.++ +..++|+.-|+.++++...+. ..+.....+. -.|.|.
T Consensus 303 ----SkRkis~WYGARS~rE~fY~Ed~d~L-----~ae~pNF~wH~aLSdplpEDnW~g~TgFihnv~~en~Lk~h~aPE 373 (410)
T COG2871 303 ----SKRKISFWYGARSLREMFYQEDFDQL-----QAENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYENYLKDHEAPE 373 (410)
T ss_pred ----ccceeeeeeccchHHHhHHHHHHHHH-----HhhCCCcEEEEEecCCCCcCCcccchhHHHHHHHhhhhhcCCCch
Confidence 36799999999999999998888665 347789999999998865442 2222222211 157777
Q ss_pred CCCceeeeCCCc
Q 005553 511 DAPISSVLGPNR 522 (691)
Q Consensus 511 ~~~~~~v~gp~~ 522 (691)
|+-.. +|||+-
T Consensus 374 DceyY-mCGPp~ 384 (410)
T COG2871 374 DCEYY-MCGPPL 384 (410)
T ss_pred heeEE-eeCcch
Confidence 77554 899984
No 81
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.22 E-value=5.5e-11 Score=131.86 Aligned_cols=164 Identities=18% Similarity=0.121 Sum_probs=105.1
Q ss_pred CceeeeeEeeeCCCCCCCeEEEEEEc-------------CCchhHHHHHhhcCCCCCceeEEEEECCCC-CCCCCCCCCC
Q 005553 347 KLQWHPFTVTSSSNLEPEKLSVVIKG-------------EGSWSKKLYQVLSSPSSIDRLDVSVEGPYG-PVSTHFLRHD 412 (691)
Q Consensus 347 ~~q~HPFTIas~p~~~~~~l~l~IK~-------------~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG-~~~~~~~~~~ 412 (691)
..+.|||||+|+|...++.+++.|+. .|-.|+.|. .++.|+ .+.+.+|-| .+..+.+...
T Consensus 174 ~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~-~l~~Gd-----~v~v~~~~~~~F~lp~~~~~ 247 (406)
T cd06202 174 LLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLN-GLTPGD-----TVPCFVRSAPSFHLPEDPSV 247 (406)
T ss_pred ccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHH-hCCCCC-----EEEEEEeeCCccCCCCCCCC
Confidence 34789999999986445666666543 367888884 588887 455554432 3433333457
Q ss_pred EEEEEecCCCcccHHHHHHHHHHhcc---cCCCCCCeEEEEEEeCCC-CchhHHHhhcccCCCCCCCCCCceEEEEEEeC
Q 005553 413 TLVMVSGGSGITPFISVIRELMYAST---VTKCKTPQVILICSFKNS-SDLTMLDLLLPISGTPTELPNLKLQIEAYVTR 488 (691)
Q Consensus 413 ~vvlVAGG~GITp~lsil~~L~~~~~---~~~~~~~~V~Liw~vR~~-~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr 488 (691)
+++|||||+||||+.+++++.....+ ......+++.|++++|+. +|..+.+++.+.. ......+++..++|
T Consensus 248 piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~-----~~~~~~~~~~a~SR 322 (406)
T cd06202 248 PVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAK-----NKGVLTEVYTALSR 322 (406)
T ss_pred CEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHH-----HcCCCceEEEEEcC
Confidence 89999999999999999998643211 111234689999999999 7888888886553 23455678888888
Q ss_pred CCCCCCccccccceeec-ccC-----CCCCCceeeeCCCch
Q 005553 489 EKQPTTDNSKLIRALWF-KPL-----ATDAPISSVLGPNRW 523 (691)
Q Consensus 489 ~~~~~~~~~~~~~~~~~-~P~-----~~~~~~~~v~gp~~~ 523 (691)
++.. .+++..+.+.- +.. ........+|||++|
T Consensus 323 ~~~~--~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M 361 (406)
T cd06202 323 EPGK--PKTYVQDLLKEQAESVYDALVREGGHIYVCGDVTM 361 (406)
T ss_pred CCCC--CCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCch
Confidence 6431 12222221111 100 012455679999873
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.21 E-value=2.1e-10 Score=135.81 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=96.6
Q ss_pred eEEEEEEEEecCCEEEEEEecCCCC-ccCCCCEEEEEeCCCC--Cc-eeeeeEeeeCCCCCCCeEEEEEEcCCchhHHHH
Q 005553 306 AVRLVSARMLPGETVELNFSKAPGL-SYNPTSIMFINVPSIS--KL-QWHPFTVTSSSNLEPEKLSVVIKGEGSWSKKLY 381 (691)
Q Consensus 306 ~~~v~s~~~l~~~~~~l~~~~~~~~-~~~pGQ~v~L~~p~~s--~~-q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~ 381 (691)
..++++.+.+++++.++++..|... .++||||+.|+.++.+ .+ +..||||++.+. +++.+++++|..|..|+.|.
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~-e~g~It~i~rvVGkgT~~Ls 870 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDV-EKGLISFIVFEVGKSTSLCK 870 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCC-CCCEEEEEEEEEChHHHHHh
Confidence 4578899999999999999876533 5889999999986432 22 557999999865 57889999999999999997
Q ss_pred HhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHH
Q 005553 382 QVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMY 435 (691)
Q Consensus 382 ~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~ 435 (691)
+ +++|+ ++.+.||+|.+.+ ....+++++||||+|++| +++++.+
T Consensus 871 ~-l~~Gd-----~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~Lk~ 914 (1028)
T PRK06567 871 T-LSENE-----KVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKVLKE 914 (1028)
T ss_pred c-CCCCC-----EEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHHHHH
Confidence 6 78887 6999999998743 434689999999999996 5566654
No 83
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.16 E-value=8.8e-11 Score=135.60 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=106.6
Q ss_pred CccCCCCEEEEEeCCCCCceeeeeEeeeCCCCCCCeEEEEEEc----------CCchhHHHHHhhcCCCCCceeEEEEEC
Q 005553 330 LSYNPTSIMFINVPSISKLQWHPFTVTSSSNLEPEKLSVVIKG----------EGSWSKKLYQVLSSPSSIDRLDVSVEG 399 (691)
Q Consensus 330 ~~~~pGQ~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~----------~Gg~T~~L~~~l~~g~~~~~~~v~VeG 399 (691)
.++.|||++.+..| .+.|+|||+|+|...++.+.+.|+. .|..|..|.+.++.|+ ++.+.|
T Consensus 370 ~~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd-----~v~v~~ 440 (600)
T PRK10953 370 AQLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEG-----EVRVFI 440 (600)
T ss_pred CCCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCC-----EEEEEe
Confidence 36789998888765 3679999999986556677776532 4667888888788887 688888
Q ss_pred CCC-CCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCC-CCchhHHHhhcccCCCCCCCCC
Q 005553 400 PYG-PVSTHFLRHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKN-SSDLTMLDLLLPISGTPTELPN 477 (691)
Q Consensus 400 PYG-~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~-~~~l~~~d~l~~~~~~~~~~~~ 477 (691)
|.| .+..+.+...+++|||+|+||||+.+++++...... ..++.|+|++|+ ..|..+.+|+.+... +.
T Consensus 441 ~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~-----~~~~~LffG~R~~~~D~lY~~El~~~~~-----~g 510 (600)
T PRK10953 441 EHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGA-----PGKNWLFFGNPHFTEDFLYQVEWQRYVK-----EG 510 (600)
T ss_pred ccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCC-----CCCeEEEeeccCCccchhHHHHHHHHHH-----cC
Confidence 876 454333445789999999999999999998765432 457999999998 678889999876531 22
Q ss_pred CceEEEEEEeCCC
Q 005553 478 LKLQIEAYVTREK 490 (691)
Q Consensus 478 ~~l~i~iyvTr~~ 490 (691)
..-+++...+|++
T Consensus 511 ~l~~l~~afSRd~ 523 (600)
T PRK10953 511 LLTRIDLAWSRDQ 523 (600)
T ss_pred CcceEEEEECCCC
Confidence 2234667778765
No 84
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=98.78 E-value=1.9e-09 Score=96.72 Aligned_cols=100 Identities=19% Similarity=0.308 Sum_probs=64.4
Q ss_pred EEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCCCCc
Q 005553 416 MVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQPTTD 495 (691)
Q Consensus 416 lVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~~~~ 495 (691)
|||||+||||++|++++++.+. ..++++|+|++|+.+++.+.+++.+... ....++++....+.+++....
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~-----~~~~v~l~~~~r~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~ 71 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN-----DNRKVTLFYGARTPEDLLFRDELEALAQ----EYPNRFHVVYVSSPDDGWDGF 71 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT-----CTSEEEEEEEESSGGGSTTHHHHHHHHH----HSTTCEEEEEETTTTSSTTSE
T ss_pred CeecceeHHHHHHHHHHHHHhC-----CCCCEEEEEEEcccccccchhHHHHHHh----hcccccccccccccccccCCc
Confidence 7999999999999999999873 2579999999999999999888876531 111234444331111222233
Q ss_pred cccccceeec---c-cCCCCCCceeeeCCCchh
Q 005553 496 NSKLIRALWF---K-PLATDAPISSVLGPNRWL 524 (691)
Q Consensus 496 ~~~~~~~~~~---~-P~~~~~~~~~v~gp~~~~ 524 (691)
.+...+.+.- . ....+.....+|||++|.
T Consensus 72 ~g~v~~~~~~~~~~~~~~~~~~~v~iCGp~~m~ 104 (109)
T PF00175_consen 72 KGRVTDLLLEDLLPEKIDPDDTHVYICGPPPMM 104 (109)
T ss_dssp ESSHHHHHHHHHHHHHHCTTTEEEEEEEEHHHH
T ss_pred eeehhHHHHHhhcccccCCCCCEEEEECCHHHH
Confidence 3333333211 1 112345667899999853
No 85
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=98.62 E-value=1.5e-06 Score=87.25 Aligned_cols=123 Identities=18% Similarity=0.067 Sum_probs=94.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcCcccchhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhh
Q 005553 147 ESTALRFGLVGNICLTLLFFPVARGSSVLPLFGLTSEASIKYHIWLGHMVMTLFTAHGVCYIIFWAVTNNISEMLQWAKI 226 (691)
Q Consensus 147 ~~va~R~G~la~~~l~~l~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~~~~~~w~~~ 226 (691)
+.+...+|..|...+.+.++. +++.+++|++ ++..+||++|..+++.+++|...|...... ..+++...--..
T Consensus 41 ~~~~~~tG~~Al~llll~l~l----~pL~~l~~~~--~l~~~RR~LGl~af~~a~lH~~~y~~~~~~-~~~~~~~~~i~~ 113 (205)
T PRK05419 41 KDIEHFTGLWALVFLLATLAV----TPLRRLTGQP--LLIRTRRLLGLWAFFYATLHLLSYLLLDLG-LDWSLLGKEIVK 113 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccHHHHHHHHHh
Confidence 467899999999888777654 5678888875 899999999999999999999988765321 112222211122
Q ss_pred ccchhhHHHHHHHHHHHHHhccchhhhc-hhhHHHHHHHhHHHHHHHHHhhh
Q 005553 227 GISNVAGELALLSGLAMWATTFPPIRRK-FFELFFYTHYLYILFVVFFVFHV 277 (691)
Q Consensus 227 ~~~~~~G~ial~~l~~l~~~Sl~~iRr~-~YE~F~~~H~l~~~~lv~~~~H~ 277 (691)
.++...|.+|++.++.|.+||....||| .| .|..+|.+..++.+....|.
T Consensus 114 ~~~i~~G~ia~~lLl~LaiTS~~~~~rrLg~-~Wk~LH~l~Y~a~~L~~~H~ 164 (205)
T PRK05419 114 RPYITVGMAAFLILLPLALTSTRASQRRLGK-RWQKLHRLVYLIAILAPLHY 164 (205)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999998876 56 89999998766666778884
No 86
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.61 E-value=3.2e-07 Score=92.69 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=92.5
Q ss_pred cceEEEEEEEEecCCEEEEEEecCC----CCccCCCCEEEEEeCCCCCceeee----eEeeeCCCCCCCeEEEEEEcC--
Q 005553 304 RRAVRLVSARMLPGETVELNFSKAP----GLSYNPTSIMFINVPSISKLQWHP----FTVTSSSNLEPEKLSVVIKGE-- 373 (691)
Q Consensus 304 ~~~~~v~s~~~l~~~~~~l~~~~~~----~~~~~pGQ~v~L~~p~~s~~q~HP----FTIas~p~~~~~~l~l~IK~~-- 373 (691)
+..+++....-.++|+.++.+.+.. ..+..||||+-+.-.-++ ++|- ++.+...+.-.+.+++.+|..
T Consensus 149 ~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~--~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~ 226 (385)
T KOG3378|consen 149 EVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPG--LSHKTLREYSLSNRVDTCRNQFRISVRRVAG 226 (385)
T ss_pred ccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCc--cchhHHHHHHHhhhhhhhccceeEEEeehhc
Confidence 4567777777788999999885422 245889999988753332 3332 333333222467899999984
Q ss_pred CchhHHHHHhhcCCCCCceeEEEEECCCCCCCC---CCCCCCEEEEEecCCCcccHHHHHHHHHHhc
Q 005553 374 GSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVST---HFLRHDTLVMVSGGSGITPFISVIRELMYAS 437 (691)
Q Consensus 374 Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~---~~~~~~~vvlVAGG~GITp~lsil~~L~~~~ 437 (691)
|-.+.-+++.++.|| .+.+.-|-|.+.. ..+....++|.|||+||||.+++++..+...
T Consensus 227 G~VS~~~H~~~KVGD-----~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~ 288 (385)
T KOG3378|consen 227 GVVSNFVHDNLKVGD-----IVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCY 288 (385)
T ss_pred hhhHHHhhccccccc-----eeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhcC
Confidence 447778888899998 7999999999842 2234578999999999999999999877643
No 87
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=98.21 E-value=7e-06 Score=94.26 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=93.9
Q ss_pred ceeeeeEeeeCCCCCCCeEEEEEEc----------CCchhHHHHHhhcCCCCCceeEEEEECCCC-CCCCCCCCCCEEEE
Q 005553 348 LQWHPFTVTSSSNLEPEKLSVVIKG----------EGSWSKKLYQVLSSPSSIDRLDVSVEGPYG-PVSTHFLRHDTLVM 416 (691)
Q Consensus 348 ~q~HPFTIas~p~~~~~~l~l~IK~----------~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG-~~~~~~~~~~~vvl 416 (691)
+..|=|||+|++...++.+.++|.. .|.-|..|.+....|+ .+++.+ .-+ ++..+.+...+++|
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~---~i~v~v--~~n~nf~lp~~~~~PiIM 445 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGD---TIPVFV--QPNKNFRLPEDPETPIIM 445 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCC---eEEEEe--ccCCccccCCCCCCceEE
Confidence 3567899999998777777776643 3667778887766566 334444 344 33222233488999
Q ss_pred EecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCC-CCchhHHHhhcccCCCCCCCCCCceEEEEEEeCCCCC
Q 005553 417 VSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKN-SSDLTMLDLLLPISGTPTELPNLKLQIEAYVTREKQP 492 (691)
Q Consensus 417 VAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~-~~~l~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~~ 492 (691)
|+-|+||+|+.+.+++-..... ..++.|++++|+ ..|..+.+|+.+.. .+....++....+|++..
T Consensus 446 IG~GTGIAPFRafvq~r~~~~~-----~gk~wLfFG~R~~~~DfLY~~Ewe~~~-----~~G~~~~l~~AfSRdq~~ 512 (587)
T COG0369 446 IGPGTGIAPFRAFVQERAANGA-----EGKNWLFFGCRHFTEDFLYQEEWEEYL-----KDGVLTRLDLAFSRDQEE 512 (587)
T ss_pred EcCCCCchhHHHHHHHHHhccc-----cCceEEEecCCCCccchhhHHHHHHHH-----hcCCceeEEEEEeecCCC
Confidence 9999999999999999776543 238999999999 67888888886642 244578888899998643
No 88
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=97.95 E-value=3.9e-05 Score=88.31 Aligned_cols=136 Identities=15% Similarity=0.224 Sum_probs=88.4
Q ss_pred CceeeeeEeeeCCCCCCCeEEEEEEc------CC-----chhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEE
Q 005553 347 KLQWHPFTVTSSSNLEPEKLSVVIKG------EG-----SWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLV 415 (691)
Q Consensus 347 ~~q~HPFTIas~p~~~~~~l~l~IK~------~G-----g~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vv 415 (691)
.+|.|+|||+|+|...++.+.+++-. .| |.++.....++.++.... ....++..-. .+.+...+++
T Consensus 419 ~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~--~~~~~~s~fr-lp~dp~~PiI 495 (645)
T KOG1158|consen 419 RLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPN--PVPVGKSMFR-LPSDPSTPII 495 (645)
T ss_pred cccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCc--ceeeccccee-cCCCCCCcEE
Confidence 56899999999987666655544322 22 444444444666653211 2333333322 1223456899
Q ss_pred EEecCCCcccHHHHHHHHHHhcccCC-CCCCeEEEEEEeCCCCch-hHHHhhcccCCCCCCCCCCceEEEEEEeCCCC
Q 005553 416 MVSGGSGITPFISVIRELMYASTVTK-CKTPQVILICSFKNSSDL-TMLDLLLPISGTPTELPNLKLQIEAYVTREKQ 491 (691)
Q Consensus 416 lVAGG~GITp~lsil~~L~~~~~~~~-~~~~~V~Liw~vR~~~~l-~~~d~l~~~~~~~~~~~~~~l~i~iyvTr~~~ 491 (691)
||+-|+||+||.+.+++.....+++. .... +.|++++|+.++- .+.+|+... .....+.++....+|++.
T Consensus 496 MIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~-----~~~~~l~~l~~A~SReq~ 567 (645)
T KOG1158|consen 496 MIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEY-----KKAGILTRLDVAFSREQT 567 (645)
T ss_pred EEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHH-----HhcCcchhheeeeeccCC
Confidence 99999999999999999887755432 2233 8999999999876 556666543 234556678888898863
No 89
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.81 E-value=0.0009 Score=66.69 Aligned_cols=147 Identities=14% Similarity=0.064 Sum_probs=97.9
Q ss_pred HHHHHHhHHHHHHHHHHHHhhcCcccchhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhhc
Q 005553 148 STALRFGLVGNICLTLLFFPVARGSSVLPLFGLTSEASIKYHIWLGHMVMTLFTAHGVCYIIFWAVTNNISEMLQWAKIG 227 (691)
Q Consensus 148 ~va~R~G~la~~~l~~l~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlg~~~~~~~~vH~i~~~~~~~~~~~~~~~~~w~~~~ 227 (691)
.+-..+|.-+...+-+.++.+ +...+.+++ ..+.+-|-+|..+++.++.|...|......-+ ......--...
T Consensus 42 ~~~~~~g~~al~fLl~~la~t----p~~~~~~~~--~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~-~~~~~~d~~~r 114 (209)
T COG2717 42 EAQHFTGIWALIFLLVTLAVT----PLARLLKQP--KLIRIRRALGLWAFFYALLHFTAYLVLDLGLD-LALLGLDLLKR 114 (209)
T ss_pred HHHHHhhHHHHHHHHHHHHHH----HHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHhhHHHHHh
Confidence 344555665543333332212 223344555 88999999999999999999999987543222 22211111223
Q ss_pred cchhhHHHHHHHHHHHHHhccchhhhchhhHHHHHHHhHHHHHHHHHhhhhh-----hHHHHHHHHH-HHHHHHHHHhhc
Q 005553 228 ISNVAGELALLSGLAMWATTFPPIRRKFFELFFYTHYLYILFVVFFVFHVGI-----SYSLIMLPSF-YLFVVDRYLRFL 301 (691)
Q Consensus 228 ~~~~~G~ial~~l~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~~-----~~~~~v~~~i-~l~~~dR~lR~~ 301 (691)
++...|.+|++++..|.+||.++.|||.=..+..+|.+..++++..++|.-. ...++++..+ +.+...|+-+..
T Consensus 115 pyitiG~iaflll~pLalTS~k~~~rrlG~rW~~LHrLvYl~~~L~~lH~~~s~K~~~~~~vlY~ii~~~lll~R~~k~~ 194 (209)
T COG2717 115 PYITIGMIAFLLLIPLALTSFKWVRRRLGKRWKKLHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRVTKTR 194 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999997799999999988888888999742 1222333322 345667777654
No 90
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=96.39 E-value=0.019 Score=63.39 Aligned_cols=108 Identities=24% Similarity=0.394 Sum_probs=71.6
Q ss_pred EeCCCCCceeeeeEeeeCCCCCCCeEEEEEE-----------cCCchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCC
Q 005553 341 NVPSISKLQWHPFTVTSSSNLEPEKLSVVIK-----------GEGSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFL 409 (691)
Q Consensus 341 ~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK-----------~~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~ 409 (691)
.+|.+ ..|.|||+|.|.. -++++.|- ++|--|+.|.+ +++|+ .+++.|+- |+...+..
T Consensus 362 ~~P~I---rPR~fSIas~~~~--~~leL~VAiV~ykT~l~~pRrGlCS~wl~s-L~~g~---~i~~~v~~--g~l~~p~~ 430 (574)
T KOG1159|consen 362 LLPVI---RPRAFSIASSPGA--HHLELLVAIVEYKTILKEPRRGLCSNWLAS-LKPGD---EIPIKVRP--GTLYFPSD 430 (574)
T ss_pred hcccc---ccceeeeccCCCC--CceeEEEEEEEEeeeccccccchhHHHHhh-cCCCC---eEEEEEec--CccccCCC
Confidence 34555 5689999999863 34665542 14556666665 77776 45666662 33322223
Q ss_pred CCCEEEEEecCCCcccHHHHHHHHHHhcccCCCCCCeEEEEEEeCCCC-chhHHHhh
Q 005553 410 RHDTLVMVSGGSGITPFISVIRELMYASTVTKCKTPQVILICSFKNSS-DLTMLDLL 465 (691)
Q Consensus 410 ~~~~vvlVAGG~GITp~lsil~~L~~~~~~~~~~~~~V~Liw~vR~~~-~l~~~d~l 465 (691)
....++||+-|+||||+.+++++-..++. ...-|.+++|+.+ |..|.|+.
T Consensus 431 ~~~PlImVGPGTGvAPfRa~i~er~~q~~------~~~~lFfGCR~K~~Df~y~~eW 481 (574)
T KOG1159|consen 431 LNKPLIMVGPGTGVAPFRALIQERIYQGD------KENVLFFGCRNKDKDFLYEDEW 481 (574)
T ss_pred CCCCeEEEcCCCCcccHHHHHHHHHhhcc------CCceEEEecccCCccccccchh
Confidence 35699999999999999999998775432 2347778999876 45555554
No 91
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.13 Score=53.54 Aligned_cols=139 Identities=10% Similarity=0.180 Sum_probs=99.2
Q ss_pred ceEEEEEEEEecCCEEEEEEecCCCCcc---CC-CCEEEEEeCCCC--C------------------ceeeeeEeeeCCC
Q 005553 305 RAVRLVSARMLPGETVELNFSKAPGLSY---NP-TSIMFINVPSIS--K------------------LQWHPFTVTSSSN 360 (691)
Q Consensus 305 ~~~~v~s~~~l~~~~~~l~~~~~~~~~~---~p-GQ~v~L~~p~~s--~------------------~q~HPFTIas~p~ 360 (691)
+.+++..++.+++..+++++..+....+ .+ +||+.|-||..+ . .-.++|||-+...
T Consensus 18 ~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~d~ 97 (265)
T COG2375 18 HEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAVDA 97 (265)
T ss_pred eEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeeecc
Confidence 5678888999999999999987654332 34 459999997532 1 2268999976533
Q ss_pred CCCC--eEEEEEEcCCchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcccHHHHHHHHHHhcc
Q 005553 361 LEPE--KLSVVIKGEGSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGITPFISVIRELMYAST 438 (691)
Q Consensus 361 ~~~~--~l~l~IK~~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GITp~lsil~~L~~~~~ 438 (691)
+.+ .+.|++-..+|-.+.=...++.|| ++.+-||=|... +...++..+|++==+++..+..+|+++-..
T Consensus 98 -~~~e~~vDfVlH~~~gpas~WA~~a~~GD-----~l~i~GP~g~~~-p~~~~~~~lLigDetAlPAIa~iLE~lp~~-- 168 (265)
T COG2375 98 -AAGELDVDFVLHGEGGPASRWARTAQPGD-----TLTIMGPRGSLV-PPEAADWYLLIGDETALPAIARILETLPAD-- 168 (265)
T ss_pred -cccEEEEEEEEcCCCCcchhhHhhCCCCC-----EEEEeCCCCCCC-CCCCcceEEEeccccchHHHHHHHHhCCCC--
Confidence 333 456777755555555556688898 899999999964 356789999999999999999999887432
Q ss_pred cCCCCCCeEEEEEEeCCCCc
Q 005553 439 VTKCKTPQVILICSFKNSSD 458 (691)
Q Consensus 439 ~~~~~~~~V~Liw~vR~~~~ 458 (691)
.+.+.+-.+++.++
T Consensus 169 ------~~~~a~lev~d~ad 182 (265)
T COG2375 169 ------TPAEAFLEVDDAAD 182 (265)
T ss_pred ------CceEEEEEeCChHH
Confidence 23344555555544
No 92
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=95.60 E-value=0.095 Score=48.01 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=53.8
Q ss_pred EEEEEEEecCCEEEEEEecCCCCc---cCCCCEEEEEeCCCCC---------------------ceeeeeEeeeCCCCCC
Q 005553 308 RLVSARMLPGETVELNFSKAPGLS---YNPTSIMFINVPSISK---------------------LQWHPFTVTSSSNLEP 363 (691)
Q Consensus 308 ~v~s~~~l~~~~~~l~~~~~~~~~---~~pGQ~v~L~~p~~s~---------------------~q~HPFTIas~p~~~~ 363 (691)
++.+++.++++.+++++..+.-.. ..||||+.|.+|.... ...+.||+-+... +.
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~-~~ 79 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDP-ET 79 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEET-T-
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcC-CC
Confidence 467788999999999998754322 4699999999986431 1468899988754 56
Q ss_pred CeEEEEEEcCC--chhHHHHHhhcCCCCCceeEEEEECCCCCC
Q 005553 364 EKLSVVIKGEG--SWSKKLYQVLSSPSSIDRLDVSVEGPYGPV 404 (691)
Q Consensus 364 ~~l~l~IK~~G--g~T~~L~~~l~~g~~~~~~~v~VeGPYG~~ 404 (691)
+++.+-+-..| |-..+=.+.++.|+ ++.+-||=|++
T Consensus 80 ~~l~iDfv~Hg~~Gpas~WA~~A~pGd-----~v~v~gP~g~~ 117 (117)
T PF08021_consen 80 GELDIDFVLHGDEGPASRWARSARPGD-----RVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEEE--SS--HHHHHHHH--TT------EEEEEEEE---
T ss_pred CEEEEEEEECCCCCchHHHHhhCCCCC-----EEEEeCCCCCC
Confidence 77777665544 44555556688888 89999998764
No 93
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=87.87 E-value=0.71 Score=47.50 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=36.0
Q ss_pred CCCChHHHHhhcCCceEEEEeeCCcchHHHHHHHHHcCCC--CceEEEeecc
Q 005553 640 KRPELKRMLFECKESSVGVLVSGPKRMRHEVATICSSGLA--ANLHFESISF 689 (691)
Q Consensus 640 ~RP~~~~i~~~~~~~~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s~~f 689 (691)
+|.+...+-.....++.-|++|||++|.++|.+..++... +++|+|+...
T Consensus 194 g~~~~~~l~~~~~~~~~~v~icGp~~m~~~v~~~l~~~G~~~~~i~~e~f~~ 245 (247)
T cd06184 194 GRIDLALLRELLLPADADFYLCGPVPFMQAVREGLKALGVPAERIHYEVFGP 245 (247)
T ss_pred CccCHHHHhhccCCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeeccCC
Confidence 4665433322133456789999999999999999998644 6889888754
No 94
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=86.05 E-value=0.67 Score=47.54 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=26.8
Q ss_pred ceEEEEeeCCcchHHHHHHHHHcCC--C------CceEEEe
Q 005553 654 SSVGVLVSGPKRMRHEVATICSSGL--A------ANLHFES 686 (691)
Q Consensus 654 ~~VGVlvcGP~~m~~~Va~~c~~~~--~------~~~~f~s 686 (691)
++--|++|||+.|.++|+++++... . .++|+|+
T Consensus 200 ~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~~~~~E~ 240 (241)
T cd06195 200 ETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPGNITVEK 240 (241)
T ss_pred ccCEEEEeCCHHHHHHHHHHHHHcCCCccccCCCceEEEec
Confidence 3445999999999999999998843 2 6788886
No 95
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=85.87 E-value=0.57 Score=47.61 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=23.4
Q ss_pred EEEeeCCcchHHHHHHHHHcCCCCceEEEe
Q 005553 657 GVLVSGPKRMRHEVATICSSGLAANLHFES 686 (691)
Q Consensus 657 GVlvcGP~~m~~~Va~~c~~~~~~~~~f~s 686 (691)
=|++|||+.|.++|.+.+++. ++|.|.
T Consensus 192 ~v~~CGP~~m~~~~~~~~~~~---~~~~e~ 218 (220)
T cd06197 192 EVYLCGPPALEKAVLEWLEGK---KVHRES 218 (220)
T ss_pred cEEEECcHHHHHHHHHHhhhc---eeEecc
Confidence 499999999999999999975 677665
No 96
>PRK08051 fre FMN reductase; Validated
Probab=82.87 E-value=0.78 Score=46.91 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=27.2
Q ss_pred EEeeCCcchHHHHHHHH-HcCCC--CceEEEeecc
Q 005553 658 VLVSGPKRMRHEVATIC-SSGLA--ANLHFESISF 689 (691)
Q Consensus 658 VlvcGP~~m~~~Va~~c-~~~~~--~~~~f~s~~f 689 (691)
|++|||+.|.++|.+.+ +.... +++|+|+.+|
T Consensus 197 vyicGp~~m~~~v~~~l~~~~G~~~~~i~~e~f~~ 231 (232)
T PRK08051 197 IYIAGRFEMAKIARELFCRERGAREEHLFGDAFAF 231 (232)
T ss_pred EEEECCHHHHHHHHHHHHHHcCCCHHHeecccccc
Confidence 99999999999999999 77433 7888888655
No 97
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=81.15 E-value=2 Score=43.60 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=33.4
Q ss_pred CCCChHHHHhhc--CCceEEEEeeCCcchHHHHHHHHHcCCC--CceEEEee
Q 005553 640 KRPELKRMLFEC--KESSVGVLVSGPKRMRHEVATICSSGLA--ANLHFESI 687 (691)
Q Consensus 640 ~RP~~~~i~~~~--~~~~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s~ 687 (691)
.+-.+++.+.+. ...+.-|++|||++|.++|++.++.... +++|+|..
T Consensus 176 ~~g~v~~~~~~~~~~~~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i~~E~F 227 (228)
T cd06209 176 RKGYVTDHLEAEDLNDGDVDVYLCGPPPMVDAVRSWLDEQGIEPANFYYEKF 227 (228)
T ss_pred CcCCccHHHHHhhccCCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEeeecc
Confidence 333455544432 2234569999999999999999998644 57888764
No 98
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=80.69 E-value=1.1 Score=45.42 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=26.1
Q ss_pred EEEEeeCCcchHHHHHHHHHcCCC--CceEEEe
Q 005553 656 VGVLVSGPKRMRHEVATICSSGLA--ANLHFES 686 (691)
Q Consensus 656 VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s 686 (691)
--|++|||+.|.++|.+.++.... +++|+|+
T Consensus 202 ~~v~icGp~~m~~~v~~~l~~~Gv~~~~i~~E~ 234 (235)
T cd06217 202 RRVYVCGPPAFVEAATRLLLELGVPRDRIRTEA 234 (235)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCHHHEeecc
Confidence 359999999999999999998543 6788875
No 99
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=79.24 E-value=2.2 Score=43.40 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=27.0
Q ss_pred EEEEeeCCcchHHHHHHHHHcCCC--CceEEEee
Q 005553 656 VGVLVSGPKRMRHEVATICSSGLA--ANLHFESI 687 (691)
Q Consensus 656 VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s~ 687 (691)
--|++|||++|.++|.+.++.... +++|+|+.
T Consensus 198 ~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~~e~f 231 (232)
T cd06212 198 CDVYLCGPPPMIDAALPVLEMSGVPPDQIFYDKF 231 (232)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence 349999999999999999999655 68888763
No 100
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=78.59 E-value=2.1 Score=43.40 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=27.0
Q ss_pred ceEEEEeeCCcchHHHHHHHHHcCCC--CceEEEe
Q 005553 654 SSVGVLVSGPKRMRHEVATICSSGLA--ANLHFES 686 (691)
Q Consensus 654 ~~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s 686 (691)
++--|++|||++|.+++.+..+.... +++|+|+
T Consensus 196 ~~~~v~icGp~~m~~~~~~~l~~~gv~~~~i~~e~ 230 (231)
T cd06215 196 KERTVFVCGPAGFMKAVKSLLAELGFPMSRFHQES 230 (231)
T ss_pred cCCeEEEECCHHHHHHHHHHHHHcCCCHHHeeeec
Confidence 33469999999999999999987544 7788875
No 101
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=76.69 E-value=1.8 Score=38.18 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.7
Q ss_pred CCceEEEEeeCCcchHHHHHH
Q 005553 652 KESSVGVLVSGPKRMRHEVAT 672 (691)
Q Consensus 652 ~~~~VGVlvcGP~~m~~~Va~ 672 (691)
...+.-|++|||+.|.++|++
T Consensus 89 ~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 89 DPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp CTTTEEEEEEEEHHHHHHHHH
T ss_pred CCCCCEEEEECCHHHHHHhcC
Confidence 456777999999999999874
No 102
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=75.71 E-value=4 Score=41.81 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=26.6
Q ss_pred eEEEEeeCCcchHHHHHHHHHcCCC-CceEEEe
Q 005553 655 SVGVLVSGPKRMRHEVATICSSGLA-ANLHFES 686 (691)
Q Consensus 655 ~VGVlvcGP~~m~~~Va~~c~~~~~-~~~~f~s 686 (691)
+--|++|||++|..+|.++.+.... +++|+|+
T Consensus 210 ~~~vyvcGp~~m~~~~~~~l~~~Gv~~~i~~e~ 242 (243)
T cd06216 210 DRQVYACGPPGFLDAAEELLEAAGLADRLHTER 242 (243)
T ss_pred cCeEEEECCHHHHHHHHHHHHHCCCccceeecc
Confidence 4479999999999999999988433 7788775
No 103
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=75.54 E-value=2.7 Score=42.50 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=26.4
Q ss_pred eEEEEeeCCcchHHHHHHHHHcCC--CCceEEEe
Q 005553 655 SVGVLVSGPKRMRHEVATICSSGL--AANLHFES 686 (691)
Q Consensus 655 ~VGVlvcGP~~m~~~Va~~c~~~~--~~~~~f~s 686 (691)
+--|++|||+.|.+++.++.+... .+++|+|+
T Consensus 190 ~~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~~e~ 223 (224)
T cd06189 190 DFDVYACGSPEMVYAARDDFVEKGLPEENFFSDA 223 (224)
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCHHHcccCC
Confidence 445999999999999999998843 37778775
No 104
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=75.26 E-value=1.2 Score=48.17 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=27.8
Q ss_pred EEEeeCCcchHHHHHHHHHcCCC--CceEEEeecc
Q 005553 657 GVLVSGPKRMRHEVATICSSGLA--ANLHFESISF 689 (691)
Q Consensus 657 GVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s~~f 689 (691)
-|+.|||.+|.+++++..+..|. .+||+|-.+|
T Consensus 403 sv~fCGP~~m~dsL~r~l~~~~~~i~~~h~E~F~~ 437 (438)
T COG4097 403 SVFFCGPIKMMDSLRRDLKKQNVPITNFHYEHFNF 437 (438)
T ss_pred eEEEEcCHHHHHHHHHHHHHcCCCHHHHHHHhccc
Confidence 48999999999999999999877 4688776655
No 105
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=74.09 E-value=2.4 Score=44.73 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=27.2
Q ss_pred ceEEEEeeCCcchHHHHHHHHHcC--CCCceEEEe
Q 005553 654 SSVGVLVSGPKRMRHEVATICSSG--LAANLHFES 686 (691)
Q Consensus 654 ~~VGVlvcGP~~m~~~Va~~c~~~--~~~~~~f~s 686 (691)
.+.-|++|||+.|.+++.+.+... ..+++|+|.
T Consensus 248 ~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~~i~~e~ 282 (283)
T cd06188 248 EDIEFYLCGPPPMNSAVIKMLDDLGVPRENIAFDD 282 (283)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCHHHeeccC
Confidence 456699999999999999999885 337778775
No 106
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=73.94 E-value=2.1 Score=43.01 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=23.8
Q ss_pred EEEeeCCcchHHHHHHHHHcCCC--CceEEE
Q 005553 657 GVLVSGPKRMRHEVATICSSGLA--ANLHFE 685 (691)
Q Consensus 657 GVlvcGP~~m~~~Va~~c~~~~~--~~~~f~ 685 (691)
-|++|||+.|.+++.+++..... +++|+|
T Consensus 188 ~vyiCGp~~m~~~~~~~l~~~G~~~~~i~~E 218 (218)
T cd06196 188 HFYVCGPPPMEEAINGALKELGVPEDSIVFE 218 (218)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCHHHEecC
Confidence 48999999999999999988533 666664
No 107
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=73.78 E-value=2.3 Score=43.26 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=26.3
Q ss_pred EEEEeeCCcchHHHHHHHHHcCCC--CceEEEe
Q 005553 656 VGVLVSGPKRMRHEVATICSSGLA--ANLHFES 686 (691)
Q Consensus 656 VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s 686 (691)
--|++|||+.|.+++.+.++.... +++|+|.
T Consensus 198 ~~vyicGp~~mv~~~~~~l~~~G~~~~~i~~E~ 230 (231)
T cd06191 198 REAFICGPAGMMDAVETALKELGMPPERIHTER 230 (231)
T ss_pred CeEEEECCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence 459999999999999999987544 6888875
No 108
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=72.73 E-value=2.8 Score=45.41 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=28.5
Q ss_pred EEEEeeCCcchHHHHHHHHHcCCC--CceEEEeecc
Q 005553 656 VGVLVSGPKRMRHEVATICSSGLA--ANLHFESISF 689 (691)
Q Consensus 656 VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s~~f 689 (691)
--|++|||+.|.++|.+....... +++|+|+..+
T Consensus 299 ~~vy~CGp~~m~~~~~~~l~~~G~~~~~i~~e~F~~ 334 (339)
T PRK07609 299 HQVYACGSPVMVYAARDDFVAAGLPAEEFFADAFTY 334 (339)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCHHHeEEeeccc
Confidence 359999999999999999988543 8889988654
No 109
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=72.28 E-value=2.6 Score=42.82 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=27.1
Q ss_pred ceEEEEeeCCcchHHHHHHHHHcC-C--CCceEEEee
Q 005553 654 SSVGVLVSGPKRMRHEVATICSSG-L--AANLHFESI 687 (691)
Q Consensus 654 ~~VGVlvcGP~~m~~~Va~~c~~~-~--~~~~~f~s~ 687 (691)
.+--|++|||++|.++|.++.+.. . .+++|+|..
T Consensus 195 ~~~~vyiCGp~~m~~~v~~~l~~~g~~~~~~i~~e~f 231 (232)
T cd06190 195 AEFEFYFAGPPPMVDAVQRMLMIEGVVPFDQIHFDRF 231 (232)
T ss_pred cccEEEEECCHHHHHHHHHHHHHhCCCChHheeeccc
Confidence 345699999999999999988763 2 578998864
No 110
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=72.05 E-value=2.4 Score=42.61 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=26.7
Q ss_pred ceEEEEeeCCcchHHHHHHHHHcCCC--CceEEEe
Q 005553 654 SSVGVLVSGPKRMRHEVATICSSGLA--ANLHFES 686 (691)
Q Consensus 654 ~~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s 686 (691)
++.-|++|||+.|.++|.+.++.... +++|+|.
T Consensus 180 ~~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~~E~ 214 (216)
T cd06198 180 ADADVWFCGPPGMADALEKGLRALGVPARRFHYER 214 (216)
T ss_pred CCCeEEEECcHHHHHHHHHHHHHcCCChHhcchhh
Confidence 34569999999999999999988533 6777765
No 111
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=70.50 E-value=4.7 Score=40.53 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=33.2
Q ss_pred CCCCChHHHHhhcC--CceEEEEeeCCcchHHHHHHHHHcCCC--CceEEEe
Q 005553 639 GKRPELKRMLFECK--ESSVGVLVSGPKRMRHEVATICSSGLA--ANLHFES 686 (691)
Q Consensus 639 g~RP~~~~i~~~~~--~~~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s 686 (691)
|.+-.+++.+.+.. .++--|++|||+.|.++|.+..+.... +++|+|.
T Consensus 172 ~~~g~~~~~~~~~~~~~~~~~v~vcGp~~~~~~v~~~l~~~G~~~~~i~~e~ 223 (224)
T cd06187 172 GRRGLVTDVVGRDGPDWADHDIYICGPPAMVDATVDALLARGAPPERIHFDK 223 (224)
T ss_pred CCcccHHHHHHHhccccccCEEEEECCHHHHHHHHHHHHHcCCCHHHeeccC
Confidence 44555566555432 123359999999999999999988533 6777764
No 112
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=70.01 E-value=4.6 Score=40.87 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=32.4
Q ss_pred CCCCChHHHHhhcCCceEEEEeeCCcchHHHHHHHHHcCCC--CceEEEe
Q 005553 639 GKRPELKRMLFECKESSVGVLVSGPKRMRHEVATICSSGLA--ANLHFES 686 (691)
Q Consensus 639 g~RP~~~~i~~~~~~~~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s 686 (691)
|.+...++.+.+....+--|++|||+.|.++|+++++..+. +++|.|+
T Consensus 177 g~~g~v~~~l~~~~~~~~~v~~CGp~~~~~~~~~~l~~~G~~~~~i~~e~ 226 (227)
T cd06213 177 GARGLVTEHIAEVLLAATEAYLCGPPAMIDAAIAVLRALGIAREHIHADR 226 (227)
T ss_pred CCcccHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEeccC
Confidence 33344455444332333459999999999999999988544 5777765
No 113
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=69.88 E-value=5 Score=44.45 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=28.3
Q ss_pred eEEEEeeCCcchHHHHHHHHHcCCC--CceEEEeec
Q 005553 655 SVGVLVSGPKRMRHEVATICSSGLA--ANLHFESIS 688 (691)
Q Consensus 655 ~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s~~ 688 (691)
+.-|++|||+.|.++|.+.+..... +++|+|+..
T Consensus 358 ~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~I~~E~F~ 393 (399)
T PRK13289 358 DADFYFCGPVPFMQFVAKQLLELGVPEERIHYEFFG 393 (399)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeeccC
Confidence 4569999999999999999988543 788988754
No 114
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=68.28 E-value=4.3 Score=44.14 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=26.3
Q ss_pred EEEeeCCcchHHHHHHHHHcC--CCCceEEEee
Q 005553 657 GVLVSGPKRMRHEVATICSSG--LAANLHFESI 687 (691)
Q Consensus 657 GVlvcGP~~m~~~Va~~c~~~--~~~~~~f~s~ 687 (691)
-|++|||+.|.++|.+.+... ..+++|+|..
T Consensus 303 ~vy~CGp~~mv~~~~~~L~~~Gv~~~~i~~E~F 335 (340)
T PRK11872 303 DMYLCGPPPMVEAVKQWLDEQALENYRLYYEKF 335 (340)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCHHHEEEeee
Confidence 499999999999999999874 3478888875
No 115
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=68.12 E-value=4.1 Score=44.40 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=34.6
Q ss_pred CCCCh---HHHHhhcC--CceEEEEeeCCcchHHHHHHHHHcCCC--CceEEEeecc
Q 005553 640 KRPEL---KRMLFECK--ESSVGVLVSGPKRMRHEVATICSSGLA--ANLHFESISF 689 (691)
Q Consensus 640 ~RP~~---~~i~~~~~--~~~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s~~f 689 (691)
+|.|. .+.+.+.. +++--|++|||+.|.++|++..+.... +++|+|+...
T Consensus 187 gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F~~ 243 (352)
T TIGR02160 187 GRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLGVPAGRVHLELFYT 243 (352)
T ss_pred CccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcCCCHHHEEEEeccC
Confidence 56653 34444431 222359999999999999999988533 6889888653
No 116
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=67.97 E-value=7.4 Score=40.17 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCCCChHHHHhhcCC--ceEEEEeeCCcchHHHHHHHHHcCCC
Q 005553 639 GKRPELKRMLFECKE--SSVGVLVSGPKRMRHEVATICSSGLA 679 (691)
Q Consensus 639 g~RP~~~~i~~~~~~--~~VGVlvcGP~~m~~~Va~~c~~~~~ 679 (691)
|.+..+++.+.+... ++--|++|||+.|.+++.+.++....
T Consensus 162 ~~~g~v~~~l~~~~~~~~~~~vyiCGp~~mv~~~~~~L~~~Gv 204 (246)
T cd06218 162 GTKGFVTDLLKELLAEARPDVVYACGPEPMLKAVAELAAERGV 204 (246)
T ss_pred CcceehHHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 445566776655522 35579999999999999999988443
No 117
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=67.72 E-value=4 Score=44.20 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=25.7
Q ss_pred EEeeCCcchHHHHHHHHHcCCC--CceEEEee
Q 005553 658 VLVSGPKRMRHEVATICSSGLA--ANLHFESI 687 (691)
Q Consensus 658 VlvcGP~~m~~~Va~~c~~~~~--~~~~f~s~ 687 (691)
|++|||+.|.++|.++.+.... +++|+|+.
T Consensus 206 vyiCGP~~m~~~v~~~l~~~Gv~~~~i~~E~F 237 (332)
T PRK10684 206 VMTCGPAPYMDWVEQEVKALGVTADRFFKEKF 237 (332)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCHHHeEeecc
Confidence 8999999999999999988533 67888875
No 118
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=67.24 E-value=3.8 Score=41.73 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=25.5
Q ss_pred EEEeeCCcchHHHHHHHHHcCCC--CceEEEee
Q 005553 657 GVLVSGPKRMRHEVATICSSGLA--ANLHFESI 687 (691)
Q Consensus 657 GVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s~ 687 (691)
-|++|||+.|.++|.+..+.... +++|.|..
T Consensus 203 ~vyicGp~~m~~~~~~~l~~~G~~~~~i~~E~f 235 (236)
T cd06210 203 DIYLCGPPGMVDAAFAAAREAGVPDEQVYLEKF 235 (236)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence 38999999999999999998543 67887753
No 119
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=66.59 E-value=5.5 Score=40.69 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=26.3
Q ss_pred eEEEEeeCCcchHHHHHHHHHcCCC--CceEEEe
Q 005553 655 SVGVLVSGPKRMRHEVATICSSGLA--ANLHFES 686 (691)
Q Consensus 655 ~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s 686 (691)
+--|++|||+.|.++|.++...... +++|+|.
T Consensus 204 ~~~vyvCGp~~m~~~~~~~L~~~Gv~~~~i~~e~ 237 (238)
T cd06211 204 GHKAYLCGPPPMIDACIKTLMQGRLFERDIYYEK 237 (238)
T ss_pred cCEEEEECCHHHHHHHHHHHHHcCCCHHHccccC
Confidence 3359999999999999999998555 6777764
No 120
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=66.30 E-value=4.3 Score=45.33 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=26.6
Q ss_pred EEEEeeCCcchHHHHHHHHHcCC--CCceEEEee
Q 005553 656 VGVLVSGPKRMRHEVATICSSGL--AANLHFESI 687 (691)
Q Consensus 656 VGVlvcGP~~m~~~Va~~c~~~~--~~~~~f~s~ 687 (691)
--|++|||+.|.++|.+.++... .+++|+|..
T Consensus 374 ~~vyiCGP~~m~~av~~~L~~~Gv~~~~I~~E~F 407 (409)
T PRK05464 374 CEYYMCGPPMMNAAVIKMLKDLGVEDENILLDDF 407 (409)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCHHHEEEccc
Confidence 44899999999999999998853 477888764
No 121
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=65.87 E-value=3.5 Score=41.18 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=24.5
Q ss_pred ceEEEEeeCCcchHHHHHHHHHcCC--CCceEEE
Q 005553 654 SSVGVLVSGPKRMRHEVATICSSGL--AANLHFE 685 (691)
Q Consensus 654 ~~VGVlvcGP~~m~~~Va~~c~~~~--~~~~~f~ 685 (691)
++--|++|||+.|.++|.+...+.. .+++|+|
T Consensus 190 ~~~~~yvCGp~~m~~~~~~~L~~~gv~~~~i~~e 223 (223)
T cd00322 190 SGALVYICGPPAMAKAVREALVSLGVPEERIHTE 223 (223)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHcCCCHHHcccC
Confidence 4556999999999999999998743 3555543
No 122
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=62.45 E-value=10 Score=38.73 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=29.3
Q ss_pred CChHHHHhhcC-CceEEEEeeCCcchHHHHHHHHHcCCC-CceEEEe
Q 005553 642 PELKRMLFECK-ESSVGVLVSGPKRMRHEVATICSSGLA-ANLHFES 686 (691)
Q Consensus 642 P~~~~i~~~~~-~~~VGVlvcGP~~m~~~Va~~c~~~~~-~~~~f~s 686 (691)
...++++.+.. ..+--|++|||+.|.+++.+..++.+. .++|+|+
T Consensus 153 g~~~~~l~~~~~~~~~~vyicGp~~m~~~~~~~L~~~g~~~~i~~e~ 199 (233)
T cd06220 153 GFVTDLLKELDLEEYDAIYVCGPEIMMYKVLEILDERGVRAQFSLER 199 (233)
T ss_pred ceehHHHhhhcccCCCEEEEECCHHHHHHHHHHHHhcCCcEEEEecc
Confidence 34445544442 222248999999999999999987444 4555554
No 123
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=59.73 E-value=6.7 Score=43.75 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=26.4
Q ss_pred EEEEeeCCcchHHHHHHHHHcCCC--CceEEEee
Q 005553 656 VGVLVSGPKRMRHEVATICSSGLA--ANLHFESI 687 (691)
Q Consensus 656 VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s~ 687 (691)
-=|++|||+.|.++|.+.++.... .++|+|..
T Consensus 370 ~~vylCGP~~m~~av~~~L~~~Gv~~~~I~~E~F 403 (405)
T TIGR01941 370 CEFYMCGPPMMNAAVIKMLEDLGVERENILLDDF 403 (405)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEecc
Confidence 348999999999999999988543 77888764
No 124
>COG2717 Predicted membrane protein [Function unknown]
Probab=59.12 E-value=1e+02 Score=31.23 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=44.0
Q ss_pred HhhhHHHHHHHhHHHHHHHHHHHHhhcCcccchhccCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 005553 143 QGKLESTALRFGLVGNICLTLLFFPVARGSSVLPLFGLTSEASIKYHIWLGHMVMTLFTAHGVC 206 (691)
Q Consensus 143 ~~~~~~va~R~G~la~~~l~~l~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlg~~~~~~~~vH~i~ 206 (691)
.+.......-.|++|...|..+. .+-++...+-.| .+-.++||| ++.+.+++.+|-+.
T Consensus 109 ~d~~~rpyitiG~iaflll~pLa--lTS~k~~~rrlG---~rW~~LHrL-vYl~~~L~~lH~~~ 166 (209)
T COG2717 109 LDLLKRPYITIGMIAFLLLIPLA--LTSFKWVRRRLG---KRWKKLHRL-VYLALILGALHYLW 166 (209)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH--HHhhHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33444556667888887777776 477888888888 599999997 58888999999664
No 125
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=57.63 E-value=7.9 Score=38.94 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=26.0
Q ss_pred eEEEEeeCCcchHHHHHHHHHcCCC--CceEEEe
Q 005553 655 SVGVLVSGPKRMRHEVATICSSGLA--ANLHFES 686 (691)
Q Consensus 655 ~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s 686 (691)
+--|++|||+.|.+++.+...+... +++|+|.
T Consensus 187 ~~~vyicGp~~m~~~~~~~L~~~Gv~~~~i~~e~ 220 (222)
T cd06194 187 DDVVYLCGAPSMVNAVRRRAFLAGAPMKRIYADP 220 (222)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence 4569999999999999999988544 6677665
No 126
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=57.63 E-value=9.4 Score=40.48 Aligned_cols=29 Identities=14% Similarity=-0.016 Sum_probs=22.8
Q ss_pred EEEEeeCCcchHHHHHHHHHcCCC--CceEE
Q 005553 656 VGVLVSGPKRMRHEVATICSSGLA--ANLHF 684 (691)
Q Consensus 656 VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f 684 (691)
--|++|||+.|.++|++..++... +++|+
T Consensus 213 ~~vyiCGP~~m~~~v~~~L~~~Gv~~~~i~~ 243 (289)
T PRK08345 213 TYAAICGPPVMYKFVFKELINRGYRPERIYV 243 (289)
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 348999999999999999987543 35554
No 127
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=56.25 E-value=9.5 Score=38.97 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=25.7
Q ss_pred eEEEEeeCCcchHHHHHHHHHc--CCC-CceEEEe
Q 005553 655 SVGVLVSGPKRMRHEVATICSS--GLA-ANLHFES 686 (691)
Q Consensus 655 ~VGVlvcGP~~m~~~Va~~c~~--~~~-~~~~f~s 686 (691)
+.=|.+|||+.|-+.|.+.++. +-. +++|++.
T Consensus 198 ~~~vyicGp~~mv~~v~~~l~~~~g~~~~~i~~~~ 232 (235)
T cd06193 198 DGYVWIAGEAGAVRALRRHLREERGVPRAQVYASG 232 (235)
T ss_pred CeEEEEEccHHHHHHHHHHHHHccCCCHHHEEEEE
Confidence 3459999999999999999986 333 7788764
No 128
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=56.06 E-value=17 Score=38.31 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=39.8
Q ss_pred EeCCCCChHHHHhhcC-CceEEEEeeCCcchHHHHHHHHHcCCC--CceEEEeec
Q 005553 637 HYGKRPELKRMLFECK-ESSVGVLVSGPKRMRHEVATICSSGLA--ANLHFESIS 688 (691)
Q Consensus 637 ~~g~RP~~~~i~~~~~-~~~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s~~ 688 (691)
....|+|..++..... ..+ =+++|||..|.+.|...+.+.+. +++|+|+..
T Consensus 178 ~~~g~~~~~~l~~~~~~~~r-~~y~CGp~~fm~av~~~l~~~g~~~~~vh~E~F~ 231 (266)
T COG1018 178 KLQGRIDVSRLLSAAPDGGR-EVYLCGPGPFMQAVRLALEALGVPDDRVHLEGFG 231 (266)
T ss_pred CccccccHHHHhccCCCCCC-EEEEECCHHHHHHHHHHHHHcCCChhcEEEeecC
Confidence 3578999999877762 213 38999999999999999976544 789998754
No 129
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=55.40 E-value=7.7 Score=39.53 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=26.8
Q ss_pred CceEEEEeeCCcchHHHHHHHHHcCCC--CceEEEe
Q 005553 653 ESSVGVLVSGPKRMRHEVATICSSGLA--ANLHFES 686 (691)
Q Consensus 653 ~~~VGVlvcGP~~m~~~Va~~c~~~~~--~~~~f~s 686 (691)
+++.-|++|||+.|.++|.+....... +++|+|+
T Consensus 204 ~~~~~v~icGp~~mv~~v~~~l~~~G~~~~~i~~e~ 239 (241)
T cd06214 204 TEFDEAFLCGPEPMMDAVEAALLELGVPAERIHREL 239 (241)
T ss_pred ccCcEEEEECCHHHHHHHHHHHHHcCCCHHHeeccc
Confidence 345569999999999999999987533 5777765
No 130
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=50.24 E-value=11 Score=39.07 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=19.0
Q ss_pred EEEEeeCCcchHHHHHHHHHc
Q 005553 656 VGVLVSGPKRMRHEVATICSS 676 (691)
Q Consensus 656 VGVlvcGP~~m~~~Va~~c~~ 676 (691)
--|++|||+.|.++|.+.+..
T Consensus 207 ~~vy~CGp~~Mv~~~~~~l~~ 227 (248)
T PRK10926 207 SHVMLCGNPQMVRDTQQLLKE 227 (248)
T ss_pred CEEEEECCHHHHHHHHHHHHH
Confidence 349999999999999999975
No 131
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=49.70 E-value=16 Score=38.61 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=19.8
Q ss_pred EEeeCCcchHHHHHHHHHcCCC
Q 005553 658 VLVSGPKRMRHEVATICSSGLA 679 (691)
Q Consensus 658 VlvcGP~~m~~~Va~~c~~~~~ 679 (691)
|++|||+.|-++|++.++....
T Consensus 184 vy~CGP~~M~~~v~~~l~~~gv 205 (281)
T PRK06222 184 VVAIGPVIMMKFVAELTKPYGI 205 (281)
T ss_pred EEEECCHHHHHHHHHHHHhcCC
Confidence 8999999999999999987544
No 132
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=49.54 E-value=17 Score=38.57 Aligned_cols=34 Identities=24% Similarity=0.112 Sum_probs=21.8
Q ss_pred CCCChHHHHhhc---CCceEEEEeeCCcchHHHHHHH
Q 005553 640 KRPELKRMLFEC---KESSVGVLVSGPKRMRHEVATI 673 (691)
Q Consensus 640 ~RP~~~~i~~~~---~~~~VGVlvcGP~~m~~~Va~~ 673 (691)
+|.+...|-.-+ ...++=||+|||++|.+.++..
T Consensus 235 g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~~~ 271 (286)
T KOG0534|consen 235 GFITKDLIKEHLPPPKEGETLVLICGPPPMINGAAQG 271 (286)
T ss_pred CccCHHHHHhhCCCCCCCCeEEEEECCHHHHhHHHHH
Confidence 455555554333 2225889999999999854443
No 133
>PRK05713 hypothetical protein; Provisional
Probab=49.49 E-value=11 Score=40.51 Aligned_cols=29 Identities=14% Similarity=0.007 Sum_probs=24.8
Q ss_pred EEeeCCcchHHHHHHHHHcCCC--CceEEEe
Q 005553 658 VLVSGPKRMRHEVATICSSGLA--ANLHFES 686 (691)
Q Consensus 658 VlvcGP~~m~~~Va~~c~~~~~--~~~~f~s 686 (691)
|++|||+.|.++|.+.+++... +++|+|+
T Consensus 277 vyiCGp~~mv~~~~~~L~~~Gv~~~~i~~e~ 307 (312)
T PRK05713 277 ALLCGSPASVERFARRLYLAGLPRNQLLADV 307 (312)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence 9999999999999999987544 6777775
No 134
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=47.52 E-value=1.9e+02 Score=27.66 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005553 179 GLTSEASIKYHIWLGHMVMTLFTAHGVCYIIF 210 (691)
Q Consensus 179 G~~~e~~~~~Hrwlg~~~~~~~~vH~i~~~~~ 210 (691)
+-..+....+|+++|.+.++...++.+.....
T Consensus 40 ~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~ 71 (188)
T PF00033_consen 40 FPGRQLLRWLHFSLGIVFLALFLLRILWRLFS 71 (188)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34577889999999999999999988765543
No 135
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=46.24 E-value=18 Score=38.14 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=18.1
Q ss_pred EEEeeCCcchHHHHHHHHHc
Q 005553 657 GVLVSGPKRMRHEVATICSS 676 (691)
Q Consensus 657 GVlvcGP~~m~~~Va~~c~~ 676 (691)
-|++|||++|.++|.+.+.+
T Consensus 241 ~vYiCGp~~m~~~v~~~L~~ 260 (286)
T cd06208 241 HVYICGLKGMEPGVDDALTS 260 (286)
T ss_pred EEEEeCCchHHHHHHHHHHH
Confidence 49999999999999988876
No 136
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=46.21 E-value=24 Score=36.57 Aligned_cols=25 Identities=24% Similarity=0.076 Sum_probs=21.4
Q ss_pred eEEEEeeCCcchHHHHHHHHHcCCC
Q 005553 655 SVGVLVSGPKRMRHEVATICSSGLA 679 (691)
Q Consensus 655 ~VGVlvcGP~~m~~~Va~~c~~~~~ 679 (691)
+--|++|||++|.+++.++.+..+.
T Consensus 190 ~~~vyicGp~~mv~~~~~~L~~~Gv 214 (253)
T cd06221 190 NTVAIVCGPPIMMRFVAKELLKLGV 214 (253)
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCC
Confidence 3459999999999999999988554
No 137
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=45.08 E-value=35 Score=31.43 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 005553 182 SEASIKYHIWLGHMVMTLFTAH 203 (691)
Q Consensus 182 ~e~~~~~Hrwlg~~~~~~~~vH 203 (691)
...+..+|||+|+.+++++.+-
T Consensus 105 r~~~~~~H~~~G~~~~~la~~t 126 (131)
T cd08554 105 RSSLLPFHRFFGLAIFVLAIAT 126 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888888777653
No 138
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=43.92 E-value=15 Score=38.96 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.5
Q ss_pred EEEeeCCcchHHHHHHHHHc
Q 005553 657 GVLVSGPKRMRHEVATICSS 676 (691)
Q Consensus 657 GVlvcGP~~m~~~Va~~c~~ 676 (691)
-|++|||+.|.++|.+.+.+
T Consensus 247 ~vyiCGp~~M~~~v~~~L~~ 266 (289)
T cd06201 247 QIMVCGSRAMAQGVAAVLEE 266 (289)
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 49999999999999887765
No 139
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=41.10 E-value=27 Score=35.95 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=25.9
Q ss_pred CCChHHHHhhcCCceEEEEeeCCcchHHHHHHHHHcCC
Q 005553 641 RPELKRMLFECKESSVGVLVSGPKRMRHEVATICSSGL 678 (691)
Q Consensus 641 RP~~~~i~~~~~~~~VGVlvcGP~~m~~~Va~~c~~~~ 678 (691)
+...++++.+...+.-=|++|||+.|.++|.+..+...
T Consensus 167 ~g~v~~~l~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G 204 (250)
T PRK00054 167 KGFVTDVLDELDSEYDAIYSCGPEIMMKKVVEILKEKK 204 (250)
T ss_pred ccchhHhHhhhccCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 34445555444311113899999999999999998843
No 140
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=40.85 E-value=19 Score=37.69 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=17.2
Q ss_pred EEEeeCCcc-hHHHHHHHHHc
Q 005553 657 GVLVSGPKR-MRHEVATICSS 676 (691)
Q Consensus 657 GVlvcGP~~-m~~~Va~~c~~ 676 (691)
-|++|||+. |.++|.+++.+
T Consensus 216 ~vyvCGp~~~m~~~v~~~L~~ 236 (267)
T cd06182 216 HIYVCGDAKSMAKDVEDALVK 236 (267)
T ss_pred EEEEECCcccchHHHHHHHHH
Confidence 599999999 98888877766
No 141
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=40.22 E-value=18 Score=38.65 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=16.2
Q ss_pred EEeeCCcchHHHHHHHHHc
Q 005553 658 VLVSGPKRMRHEVATICSS 676 (691)
Q Consensus 658 VlvcGP~~m~~~Va~~c~~ 676 (691)
|++|||++|.++|.+.+.+
T Consensus 262 vYiCGp~~mv~~v~~~L~~ 280 (307)
T PLN03116 262 IYFCGLKGMMPGIQDTLKR 280 (307)
T ss_pred EEEeCCHHHHHHHHHHHHH
Confidence 8999999999888776665
No 142
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=40.05 E-value=36 Score=24.42 Aligned_cols=19 Identities=32% Similarity=0.488 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005553 184 ASIKYHIWLGHMVMTLFTA 202 (691)
Q Consensus 184 ~~~~~Hrwlg~~~~~~~~v 202 (691)
.+.+.|+|+|.++-++..+
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~ 21 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFV 21 (37)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678899999988776655
No 143
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=39.97 E-value=25 Score=35.38 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.4
Q ss_pred ceEEEEeeCCcchHH-HHHHHHHcCC
Q 005553 654 SSVGVLVSGPKRMRH-EVATICSSGL 678 (691)
Q Consensus 654 ~~VGVlvcGP~~m~~-~Va~~c~~~~ 678 (691)
++--|++|||++|.+ +|++.++...
T Consensus 200 ~~~~~~icGp~~~~~~~~~~~l~~~G 225 (234)
T cd06183 200 EDTLVLVCGPPPMIEGAVKGLLKELG 225 (234)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHcC
Confidence 455799999999999 9999998744
No 144
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=37.32 E-value=60 Score=26.02 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=27.6
Q ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 005553 176 PLFGLTSEASIKYHIWLGHMVMTLFTAHGVC 206 (691)
Q Consensus 176 ~ltG~~~e~~~~~Hrwlg~~~~~~~~vH~i~ 206 (691)
.+.|.+.+.....|.|.|..+++.+.+|...
T Consensus 32 ~~~~~~~~~~~~iH~~~g~~~~~l~~~Hl~l 62 (64)
T PF14358_consen 32 PFLGLNKHFWRNIHLWAGYLFLILIILHLGL 62 (64)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899999999999999999999864
No 145
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=37.23 E-value=36 Score=35.37 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=28.2
Q ss_pred eCCCCCh-HHHHhhcC-CceEEEEeeCCcchHHHHHHHHHcCC
Q 005553 638 YGKRPEL-KRMLFECK-ESSVGVLVSGPKRMRHEVATICSSGL 678 (691)
Q Consensus 638 ~g~RP~~-~~i~~~~~-~~~VGVlvcGP~~m~~~Va~~c~~~~ 678 (691)
.|..... .+.+.+.. .+.-=|++|||+.|...|++......
T Consensus 173 ~G~~G~v~~~~~~~~~~~~~~~v~~cGp~~M~~~v~~~~~~~g 215 (252)
T COG0543 173 KGRKGFVTTDVLKELLDLEVDDVYICGPPAMVKAVREKLKEYG 215 (252)
T ss_pred CccCcceeHHHHhhhccccCCEEEEECCHHHHHHHHHHHHhcC
Confidence 3444444 45555543 23345999999999999999988855
No 146
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=37.11 E-value=56 Score=30.12 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 005553 183 EASIKYHIWLGHMVMTLFTA 202 (691)
Q Consensus 183 e~~~~~Hrwlg~~~~~~~~v 202 (691)
...+++||++|+++++++.+
T Consensus 105 ~~~~~~H~~~G~~~~~l~~~ 124 (137)
T PF03188_consen 105 PIWNKWHRWLGYLIYVLAIA 124 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777776664
No 147
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=36.19 E-value=6.2e+02 Score=27.79 Aligned_cols=80 Identities=10% Similarity=0.229 Sum_probs=49.4
Q ss_pred cchhHHhhhHHHHHHHhHHHHHHHHHHHHhhcCcccch---hccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005553 138 GVKVWQGKLESTALRFGLVGNICLTLLFFPVARGSSVL---PLFGLTSEASI-KYHIWLGHMVMTLFTAHGVCYIIFWAV 213 (691)
Q Consensus 138 ~~~~~~~~~~~va~R~G~la~~~l~~l~l~~~Rnn~l~---~ltG~~~e~~~-~~Hrwlg~~~~~~~~vH~i~~~~~~~~ 213 (691)
.++.|+..++..-.-.|.++.+.+-..+=-..++-++. .-.|.+++.+. .+--+.|........+|+..|.... .
T Consensus 113 ~~~~~k~~wd~~~~igs~~~~~~~Gvalg~~~~G~pi~~~~~~~g~~~~~l~~pf~~l~gl~~~~~~~l~Ga~~l~~k-T 191 (346)
T COG1294 113 EDPRWKKFWDWAFFIGSFLPPLLLGVALGNLLQGVPIELNGGYAGLSFDQLLNPFALLCGLGLVLMYVLHGAAWLLLK-T 191 (346)
T ss_pred cChhhHhHHHHHHHhhhHHHHHHHHHHHHHHhcCceeccCCCcccccHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 34566666665555555555554444432122333322 24455666655 7889999999999999999999876 3
Q ss_pred hchhH
Q 005553 214 TNNIS 218 (691)
Q Consensus 214 ~~~~~ 218 (691)
++..+
T Consensus 192 ~g~l~ 196 (346)
T COG1294 192 EGALQ 196 (346)
T ss_pred ccHHH
Confidence 44443
No 148
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=35.17 E-value=55 Score=22.85 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 005553 183 EASIKYHIWLGHMVMTLFTAHG 204 (691)
Q Consensus 183 e~~~~~Hrwlg~~~~~~~~vH~ 204 (691)
....++|+|+|..+.+..++=+
T Consensus 3 ~~~~~~H~~~g~~~~~~ll~~~ 24 (34)
T PF13172_consen 3 KFWRKIHRWLGLIAAIFLLLLA 24 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999988877666533
No 149
>PRK11281 hypothetical protein; Provisional
Probab=34.68 E-value=8.6e+02 Score=31.13 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=31.5
Q ss_pred hhcCcccchhccCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 005553 167 PVARGSSVLPLFGLTSEASIKYHIWLGHMVMTLFTAHGVC 206 (691)
Q Consensus 167 ~~~Rnn~l~~ltG~~~e~~~~~Hrwlg~~~~~~~~vH~i~ 206 (691)
+...|-....-+||+-+..-.+||++-+.+++...+-.+.
T Consensus 598 ~~~~~Gl~~~HF~w~~~~~~~~~~~~~~~~~~~~pl~~~~ 637 (1113)
T PRK11281 598 VLRPNGVAERHFGMPKEQVSHFRRQIVRLSLALLPLLFWS 637 (1113)
T ss_pred HhCCCCeeHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668889999999999999999988777776665543
No 150
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=33.12 E-value=67 Score=29.51 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 005553 183 EASIKYHIWLGHMVMTLFTA 202 (691)
Q Consensus 183 e~~~~~Hrwlg~~~~~~~~v 202 (691)
...+.+|||+|+++++++.+
T Consensus 104 ~~~~~~H~~~G~~~~~la~~ 123 (129)
T smart00665 104 SYLNPYHRFVGLAAFILAIV 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556778887777776654
No 151
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=32.71 E-value=70 Score=21.44 Aligned_cols=20 Identities=15% Similarity=0.424 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005553 185 SIKYHIWLGHMVMTLFTAHG 204 (691)
Q Consensus 185 ~~~~Hrwlg~~~~~~~~vH~ 204 (691)
++++|||++-++.+..++=+
T Consensus 1 ~~~LH~w~~~i~al~~lv~~ 20 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFA 20 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 35789988877766655533
No 152
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=32.70 E-value=2.9e+02 Score=26.43 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005553 185 SIKYHIWLGHMVMTLFTAHGVCY 207 (691)
Q Consensus 185 ~~~~Hrwlg~~~~~~~~vH~i~~ 207 (691)
....|.++|.+.+...+++.+..
T Consensus 42 ~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 42 VRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999998877655
No 153
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=32.60 E-value=2.7e+02 Score=27.31 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005553 183 EASIKYHIWLGHMVMTLFTAHGVCYI 208 (691)
Q Consensus 183 e~~~~~Hrwlg~~~~~~~~vH~i~~~ 208 (691)
...+.+|+|+|+++++++.+-...=.
T Consensus 135 ~~~~~~H~~~G~~~~~l~~v~i~~G~ 160 (191)
T cd08760 135 SIWNWAHRWLGRAALILAIVNIFLGL 160 (191)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999998876543
No 154
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=32.42 E-value=32 Score=35.46 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.6
Q ss_pred EEeeCCc-chHHHHHHHHHc
Q 005553 658 VLVSGPK-RMRHEVATICSS 676 (691)
Q Consensus 658 VlvcGP~-~m~~~Va~~c~~ 676 (691)
|++|||+ .|.++|.+.+..
T Consensus 205 vy~CGp~~~m~~~v~~~l~~ 224 (245)
T cd06200 205 IYVCGSLQGMAPGVDAVLDE 224 (245)
T ss_pred EEEECCchhhhHHHHHHHHH
Confidence 8999999 999999887654
No 155
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=32.26 E-value=29 Score=35.44 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=19.0
Q ss_pred EEEeeCCcchHHHHHHHHHcC
Q 005553 657 GVLVSGPKRMRHEVATICSSG 677 (691)
Q Consensus 657 GVlvcGP~~m~~~Va~~c~~~ 677 (691)
-|++|||+.|.+++.+..++.
T Consensus 180 ~v~icGp~~mv~~~~~~l~~~ 200 (243)
T cd06192 180 RIIVAGSDIMMKAVVEALDEW 200 (243)
T ss_pred EEEEECCHHHHHHHHHHHHhh
Confidence 499999999999999998773
No 156
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=31.55 E-value=44 Score=36.90 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=17.3
Q ss_pred eEEEEeeCCcchHHHHHHHHHc
Q 005553 655 SVGVLVSGPKRMRHEVATICSS 676 (691)
Q Consensus 655 ~VGVlvcGP~~m~~~Va~~c~~ 676 (691)
+-=|++|||++|.++|.++...
T Consensus 319 ~~~vYiCGp~~M~~~V~~~l~~ 340 (367)
T PLN03115 319 NTYVYMCGLKGMEKGIDDIMVS 340 (367)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH
Confidence 3349999999998888776654
No 157
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=31.15 E-value=34 Score=37.88 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=22.2
Q ss_pred CCEEEEEEecCCCCccCCCCEEEEEeCC
Q 005553 317 GETVELNFSKAPGLSYNPTSIMFINVPS 344 (691)
Q Consensus 317 ~~~~~l~~~~~~~~~~~pGQ~v~L~~p~ 344 (691)
.++..+++..+.+..|+||+++-|..+.
T Consensus 15 ~~~~~~~~~~~~~~~y~~GD~l~v~P~N 42 (384)
T cd06206 15 PSKRHLELRLPDGMTYRAGDYLAVLPRN 42 (384)
T ss_pred ccEEEEEEECCCCCccCCCCEEEEECCC
Confidence 4677778876667889999999998753
No 158
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=30.85 E-value=1.2e+02 Score=28.67 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=32.1
Q ss_pred CCCeEEEEEEcCCchhHHHHHhhcCCCCCceeEEEEECCCCCCCCCCCCCCEEEEEecCCCcc
Q 005553 362 EPEKLSVVIKGEGSWSKKLYQVLSSPSSIDRLDVSVEGPYGPVSTHFLRHDTLVMVSGGSGIT 424 (691)
Q Consensus 362 ~~~~l~l~IK~~Gg~T~~L~~~l~~g~~~~~~~v~VeGPYG~~~~~~~~~~~vvlVAGG~GIT 424 (691)
.+.+++|+||.-|+-+-. . ....+.|.|+|-+=... ..-+..+.|+||.
T Consensus 68 g~~t~t~yiKNtG~~~~~-----f---d~~sitVliDG~iv~~a------~~~~~~~~gs~i~ 116 (154)
T COG3354 68 GPYTYTFYIKNTGSDSIA-----F---DNTSITVLIDGNIVTPA------YVTFTSVNGSSIR 116 (154)
T ss_pred CceEEEEEEecCCCcccc-----c---CCCeEEEEEcCcEeccc------eEEEEecCCCeeE
Confidence 345899999998874421 1 12368999999664431 2335667888886
No 159
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=28.93 E-value=42 Score=34.51 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.3
Q ss_pred EEeeCCcchHHHHHHHHHcCCC
Q 005553 658 VLVSGPKRMRHEVATICSSGLA 679 (691)
Q Consensus 658 VlvcGP~~m~~~Va~~c~~~~~ 679 (691)
|++|||+.|-+++.+..+....
T Consensus 183 vyiCGP~~m~~~~~~~l~~~Gv 204 (248)
T cd06219 183 VIAIGPPIMMKAVSELTRPYGI 204 (248)
T ss_pred EEEECCHHHHHHHHHHHHHcCC
Confidence 8999999999999999976433
No 160
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=28.93 E-value=1.2e+02 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.469 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005553 184 ASIKYHIWLGHMVMTLFTAHGVC 206 (691)
Q Consensus 184 ~~~~~Hrwlg~~~~~~~~vH~i~ 206 (691)
+...+||++|++-+..+++=+++
T Consensus 4 k~~~~HR~lGrvyv~~~~~~a~s 26 (103)
T PF10067_consen 4 KGPRLHRWLGRVYVAAMLISALS 26 (103)
T ss_pred CcccHHHhhhHHHHHHHHHHHHH
Confidence 44579999999998888855544
No 161
>PF00599 Flu_M2: Influenza Matrix protein (M2); InterPro: IPR002089 This entry contains Influenza virus matrix protein 2. It is an integral membrane protein that is expressed on the infected cell surface and incorporated into virions where it is a minor component. The protein spans the viral membrane with an extracellular amino-terminus and a cytoplasmic carboxy-terminus. The transmembrane domain of the M2 protein forms the channel pore. The M2 protein, which forms a homotetramer, has H+ ion channel which was found to be regulated by pH [ and may have a pivotal role in the biology of Influenza virus infection [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015992 proton transport, 0033644 host cell membrane, 0055036 virion membrane; PDB: 2L0J_A 2KWX_B 2KIH_A 2RLF_A 1MP6_A 2LJB_D 2LJC_A 2H95_B 1NYJ_B 3BKD_E ....
Probab=28.82 E-value=14 Score=31.42 Aligned_cols=44 Identities=30% Similarity=0.261 Sum_probs=5.0
Q ss_pred CCChHHHHhhc------CCceEEEEeeCCcchHHHHHHHHHc-CCCCceEEEeec
Q 005553 641 RPELKRMLFEC------KESSVGVLVSGPKRMRHEVATICSS-GLAANLHFESIS 688 (691)
Q Consensus 641 RP~~~~i~~~~------~~~~VGVlvcGP~~m~~~Va~~c~~-~~~~~~~f~s~~ 688 (691)
|.=||-|++.+ +-|+.|| |++||++-.++=++ -+.++=||-||-
T Consensus 45 RlffkciYrr~kyglk~gpsTegv----pesmREEyrqeq~~av~~ddghfv~ie 95 (97)
T PF00599_consen 45 RLFFKCIYRRFKYGLKRGPSTEGV----PESMREEYRQEQQSAVDVDDGHFVNIE 95 (97)
T ss_dssp HCTCCHHHHHHHHHHHC--------------------------------------
T ss_pred HHHHHHHHHHHHhhcccCCCCCCC----CHHHHHHHhhhhccccccCCCceEEEE
Confidence 34444454444 3468887 99999999888776 355777887763
No 162
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=28.70 E-value=40 Score=35.13 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=20.9
Q ss_pred eEEEEeeCCcchHHHHHHHHHcCCC
Q 005553 655 SVGVLVSGPKRMRHEVATICSSGLA 679 (691)
Q Consensus 655 ~VGVlvcGP~~m~~~Va~~c~~~~~ 679 (691)
+--|++|||++|.+++.+..+....
T Consensus 190 ~~~v~lCGp~~mv~~~~~~L~~~Gv 214 (261)
T TIGR02911 190 EVQAIVVGPPIMMKFTVQELLKKGI 214 (261)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCC
Confidence 3459999999999999999887543
No 163
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=27.86 E-value=1.1e+02 Score=27.28 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhc-----cchhhhchhhHHHHHHHhH-HHHHHHHHhhh
Q 005553 233 GELALLSGLAMWATT-----FPPIRRKFFELFFYTHYLY-ILFVVFFVFHV 277 (691)
Q Consensus 233 G~ial~~l~~l~~~S-----l~~iRr~~YE~F~~~H~l~-~~~lv~~~~H~ 277 (691)
|.+|++.+.+..+.+ +...++..+|.....|... ...+++...|.
T Consensus 2 G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~ 52 (125)
T PF01794_consen 2 GILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHG 52 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655554 2234567899999999976 46667777886
No 164
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=27.11 E-value=37 Score=36.83 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.5
Q ss_pred EEEeeCCcchHHHHHHH
Q 005553 657 GVLVSGPKRMRHEVATI 673 (691)
Q Consensus 657 GVlvcGP~~m~~~Va~~ 673 (691)
-|++|||+.|.+.||..
T Consensus 265 ~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 265 IIMLCGPDQLLNHVAGT 281 (325)
T ss_pred EEEEeCCHHHHHHhcCC
Confidence 48999999999999877
No 165
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=26.04 E-value=44 Score=37.45 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=14.9
Q ss_pred EEEeeCCcch----HHHHHHHHHc
Q 005553 657 GVLVSGPKRM----RHEVATICSS 676 (691)
Q Consensus 657 GVlvcGP~~m----~~~Va~~c~~ 676 (691)
=|++|||+.| .+.++++|..
T Consensus 365 ~vYiCGp~~M~~~v~~~L~~~~~~ 388 (411)
T TIGR03224 365 YIYICGLKGMEEGVLDAFRDVCAT 388 (411)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHH
Confidence 3999999999 5555566654
No 166
>PRK05802 hypothetical protein; Provisional
Probab=25.93 E-value=43 Score=36.16 Aligned_cols=31 Identities=10% Similarity=0.205 Sum_probs=22.8
Q ss_pred hHHHHhhcCCceEEEEeeCCcchHHHHHHHHHc
Q 005553 644 LKRMLFECKESSVGVLVSGPKRMRHEVATICSS 676 (691)
Q Consensus 644 ~~~i~~~~~~~~VGVlvcGP~~m~~~Va~~c~~ 676 (691)
+++++.+.+ .++ |++|||+.|.+.|++....
T Consensus 245 v~~~l~~~~-~~~-vy~CGP~~M~k~v~~~l~~ 275 (320)
T PRK05802 245 LKEIIKKED-INL-IHCGGSDILHYKIIEYLDK 275 (320)
T ss_pred HHHHhcCCC-CCE-EEEECCHHHHHHHHHHHhh
Confidence 444443322 255 9999999999999999876
No 167
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=24.74 E-value=57 Score=40.66 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.4
Q ss_pred EEeeCCcchHHHHHHHHHcCCCC
Q 005553 658 VLVSGPKRMRHEVATICSSGLAA 680 (691)
Q Consensus 658 VlvcGP~~m~~~Va~~c~~~~~~ 680 (691)
|++|||+.|.+.|++.+...+.+
T Consensus 850 Vy~CGP~~Mmkav~~~l~~~Gv~ 872 (944)
T PRK12779 850 VIAIGPPLMMRAVSDLTKPYGVK 872 (944)
T ss_pred EEEECCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999876543
No 168
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=23.83 E-value=73 Score=32.20 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=18.2
Q ss_pred CceeeeeEeeeCCCCCCCeEEEEEEcC
Q 005553 347 KLQWHPFTVTSSSNLEPEKLSVVIKGE 373 (691)
Q Consensus 347 ~~q~HPFTIas~p~~~~~~l~l~IK~~ 373 (691)
..+-|.|||+|+|...++.+++.+...
T Consensus 176 ~l~PR~YSIsSS~~~~p~~v~ltv~vv 202 (219)
T PF00667_consen 176 PLQPRYYSISSSPLVHPNKVHLTVSVV 202 (219)
T ss_dssp B---EEEEB-S-TTTSTTEEEEEEEE-
T ss_pred CCCCcceeecccccCCCCEEEEEEEEE
Confidence 457899999999977788999988763
No 169
>PF15201 Rod_cone_degen: Progressive rod-cone degeneration
Probab=23.38 E-value=14 Score=27.85 Aligned_cols=29 Identities=14% Similarity=0.405 Sum_probs=16.0
Q ss_pred HhhcccceeeeecccchhhhhhhhhcccC
Q 005553 576 SIAATASAAVLWNKKQNAKEATQIQHMEG 604 (691)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (691)
.....+..|.+|+++-..+-+++.+.+++
T Consensus 4 tlfllstlamlwrrrfanrvqpeps~vdg 32 (54)
T PF15201_consen 4 TLFLLSTLAMLWRRRFANRVQPEPSGVDG 32 (54)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCCCc
Confidence 33444567788887665554444444443
No 170
>KOG4126 consensus Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=23.04 E-value=51 Score=37.54 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=25.5
Q ss_pred eeeEEeCCCCChHHHHhhc----------------CCceEEEEeeCCcc
Q 005553 633 ATIVHYGKRPELKRMLFEC----------------KESSVGVLVSGPKR 665 (691)
Q Consensus 633 ~~~v~~g~RP~~~~i~~~~----------------~~~~VGVlvcGP~~ 665 (691)
.+....|.|+|+.++...- .|+||+|+.+||-+
T Consensus 442 ~y~~~~g~R~~~~~~~~~~~~~~~~a~ip~~~~~HggeDV~VfA~Gp~a 490 (529)
T KOG4126|consen 442 GYLDEDGQRIDLTAIESKSDDYSFPSAVPLDSETHGGEDVAVFASGPQA 490 (529)
T ss_pred ccccccCCcCCchhhccCCcceeccccccccCCCcCcceeeEEecccHH
Confidence 3455667799999986541 67899999999964
No 171
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=23.03 E-value=54 Score=36.26 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCEEEEEEec-CCCCccCCCCEEEEEeCC
Q 005553 317 GETVELNFSK-APGLSYNPTSIMFINVPS 344 (691)
Q Consensus 317 ~~~~~l~~~~-~~~~~~~pGQ~v~L~~p~ 344 (691)
.++..+++.. +++..|+||+|+.|..+.
T Consensus 15 ~~~~hl~l~~~~~~~~y~~GD~l~v~p~N 43 (382)
T cd06207 15 RSTRHIEFDLGGSGLSYETGDNLGIYPEN 43 (382)
T ss_pred ceEEEEEEecCCCCCccCCCCEEEEEcCC
Confidence 3577888875 356889999999998754
No 172
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=23.02 E-value=2.1e+02 Score=24.18 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=29.6
Q ss_pred ccchHHHHHHHHHHHHHhhcccceeeeecccchhh
Q 005553 560 FSFTLRAFLNMLVLCVSIAATASAAVLWNKKQNAK 594 (691)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (691)
..+|++.+.-++++.+++...||.++...+|+++-
T Consensus 37 ~~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRKrnkV 71 (77)
T PF11118_consen 37 PSLWLQFLAGLLLFAIGVGFIAGFILHRDRKRNKV 71 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhheeecccccc
Confidence 46789999999999999999999998877766653
No 173
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=22.33 E-value=59 Score=36.48 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=25.4
Q ss_pred EEEEEEEec----CCEEEEEEecCC-CCccCCCCEEEEEeCC
Q 005553 308 RLVSARMLP----GETVELNFSKAP-GLSYNPTSIMFINVPS 344 (691)
Q Consensus 308 ~v~s~~~l~----~~~~~l~~~~~~-~~~~~pGQ~v~L~~p~ 344 (691)
++++.+.+. .++..+++..+. +.+|+||+++.|..+.
T Consensus 9 ~v~~~~~lt~~~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N 50 (416)
T cd06204 9 PVAVSRELFTGSDRSCLHIEFDISGSGIRYQTGDHLAVWPTN 50 (416)
T ss_pred EEEEEeeccCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCC
Confidence 444444443 367777777543 6789999999998754
No 174
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=21.66 E-value=79 Score=38.36 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.2
Q ss_pred EEeeCCcchHHHHHHHHHcCCCC
Q 005553 658 VLVSGPKRMRHEVATICSSGLAA 680 (691)
Q Consensus 658 VlvcGP~~m~~~Va~~c~~~~~~ 680 (691)
|++|||+.|.+.|+++++..+.+
T Consensus 184 vy~CGP~~M~~~v~~~l~~~gv~ 206 (752)
T PRK12778 184 VFAIGPAIMMKFVCLLTKKYGIP 206 (752)
T ss_pred EEEECCHHHHHHHHHHHHHcCCC
Confidence 89999999999999999875443
No 175
>cd03497 SQR_TypeB_1_TM Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers,
Probab=20.08 E-value=8.5e+02 Score=24.49 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=25.5
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 005553 187 KYHIWLGHM-VMTLFTAHGVCYIIFWAVTNNISEMLQW 223 (691)
Q Consensus 187 ~~Hrwlg~~-~~~~~~vH~i~~~~~~~~~~~~~~~~~w 223 (691)
+.|-..|.+ ..++.+.|...-.......+.+.++.++
T Consensus 8 ~~~slTGl~pL~lFl~~Hl~gN~~i~~g~~afn~ya~~ 45 (207)
T cd03497 8 RLHSLLGVVPIGLFLIEHLLTNSSAASGPEGFNAAVNF 45 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 578899999 9999999999876554333333333333
Done!