BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005554
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 83/351 (23%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 30 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 87
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 88 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 147
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 148 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 205
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
+S +P +L DWG +PT
Sbjct: 206 CSIRSSTRIPLSLGPTPSVDDWGDVPT--------------------------------- 232
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
L KLG + VT VGG + V + + +
Sbjct: 233 -LEKLGVEPQE-----------------VTRGMRFVGGESAGVGRVFEYFWK-------K 267
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
D ++ ++ RN G ++T F P L G IS R ++ E ++EKER A
Sbjct: 268 DLLKVYKETRNGML--GPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVA 316
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
Length = 526
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 83/351 (23%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 30 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 87
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 88 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 147
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 148 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 205
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
+S +P +L DWG +PT
Sbjct: 206 CSIRSSTRIPLSLGPTPSVDDWGDVPT--------------------------------- 232
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
L KLG + VT VGG + V + + +
Sbjct: 233 -LEKLGVEPQE-----------------VTRGMRFVGGESAGVGRVFEYFWK-------K 267
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
D ++ ++ RN G ++T F P L G IS R ++ E ++EKER A
Sbjct: 268 DLLKVYKETRNGML--GPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVA 316
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
Length = 525
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 83/351 (23%)
Query: 34 PTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAA-SKYQAVVPLYVFDHRILSRYSNEMLE 92
P++++ + G ++WF+ DLRV D+ L A S ++P+Y D R+ ++
Sbjct: 29 PSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLF--HTTHFFN 86
Query: 93 L----------VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVE 142
++ L DLRK+L ++G +L+IR G+ E ++ L ++ A +VFA +E
Sbjct: 87 FPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC 146
Query: 143 YHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLN----DLPVSHNEFRKLQRP- 197
+ +V++ L +V + +W + Y +L DLP + +FRK
Sbjct: 147 SEEVDVERLVNQGLKRVG--NSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAK 204
Query: 198 ---LTSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTD 254
+S +P +L DWG +PT
Sbjct: 205 CSIRSSTRIPLSLGPTPSVDDWGDVPT--------------------------------- 231
Query: 255 KLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRD 314
L KLG + VT VGG + V + + +
Sbjct: 232 -LEKLGVEPQE-----------------VTRGMRFVGGESAGVGRVFEYFWK-------K 266
Query: 315 DWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEKERNA 365
D ++ ++ RN G ++T F P L G IS R ++ E ++EKER A
Sbjct: 267 DLLKVYKETRNGML--GPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVA 315
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 402 NEGVYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRD--NIYDIADGGNRVWA 459
+E Y R G + +Y AGK P ++L+HG GA E + N+ I RV A
Sbjct: 12 SERAYVERFVNAGGVETRYLEAGKGQP-VILIHGGGAGAESEGNWRNVIPILARHYRVIA 70
Query: 460 ITLLGFGRSEKPNIVYTELMWSELLRDFTVEV-VGEPVHLIGNSIGGYFVAIVACLWPAV 518
+ +LGFG++ KP+I YT+ L DF + V ++GNS+GG V+ L +
Sbjct: 71 MDMLGFGKTAKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGNSMGGATGLGVSVLHSEL 130
Query: 519 VKSVVLINSAGNVI 532
V ++VL+ SAG V+
Sbjct: 131 VNALVLMGSAGLVV 144
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
Length = 489
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 130/330 (39%), Gaps = 71/330 (21%)
Query: 46 SAVIWFKQDLRVDDHLGLVAASKYQ-AVVPLYVFDHRILSRYSNEMLE-------LVIFA 97
+ ++WF+ DLR+ DH L A K A+ +Y +D R ++ + + +
Sbjct: 7 TVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQS 66
Query: 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157
+++L +SL++ G+ L++ G E VI ++ +++ A +++ EV Q V+ L
Sbjct: 67 VQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVT----QEELDVERNLV 122
Query: 158 KVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTSPILPPTLAGAKLE 213
K + G W + ++L DLP +FRK I P A ++L
Sbjct: 123 KQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL- 181
Query: 214 ADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSP 273
LP+ + E P + P
Sbjct: 182 -----LPSPNIKLELTAPPP------------------------------------EFFP 200
Query: 274 RKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGAS 333
+ D + +G G A L LQ Y + G D++E + + GA
Sbjct: 201 QINFDHRSVLAFQG-----GETAGLARLQDY--FWHGDRLKDYKETRNGMV------GAD 247
Query: 334 FATLFGPALCLGIISRRGVHYEAIKFEKER 363
+++ F P L LG +S R ++ E ++E+ER
Sbjct: 248 YSSKFSPWLALGCLSPRFIYQEVKRYEQER 277
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF--ALEDLRKS 104
+ W ++DLR+ D++GL AA A ++ L+ D +IL + L++L++
Sbjct: 5 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 64
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
++ GS L++ G +++I +L ++++A +V+ +++E + R
Sbjct: 65 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGR 106
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
pdb|1QNF|A Chain A, Structure Of Photolyase
Length = 484
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA-VVPLYVFDHRILSRYSNEMLELVIF--ALEDLRKS 104
+ W ++DLR+ D++GL AA A ++ L+ D +IL + L++L++
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 65
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLR 146
++ GS L++ G +++I +L ++++A +V+ +++E + R
Sbjct: 66 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGR 107
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIV---YTELMWSEL 483
GPA+ L HGF +R I +A G RV A+ + G+G S P + E++ E+
Sbjct: 39 GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 98
Query: 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINS 527
+ + + V IG+ GG V +A +P V++V +N+
Sbjct: 99 VTFLDKLGLSQAV-FIGHDWGGMLVWYMALFYPERVRAVASLNT 141
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIV---YTELMWSEL 483
GPA+ L HGF +R I +A G RV A+ + G+G S P + E++ E+
Sbjct: 54 GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 113
Query: 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINS 527
+ + + V IG+ GG V +A +P V++V +N+
Sbjct: 114 VTFLDKLGLSQAV-FIGHDWGGMLVWYMALFYPERVRAVASLNT 156
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIV---YTELMWSEL 483
GPA+ L HGF +R I +A G RV A+ + G+G S P + E++ E+
Sbjct: 258 GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 317
Query: 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINS 527
+ + + V IG+ GG V +A +P V++V +N+
Sbjct: 318 VTFLDKLGLSQAV-FIGHDWGGMLVWYMALFYPERVRAVASLNT 360
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 409 RIWRWNGYQIQYTVAGK-EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGR 467
+ + G QI G E P +L +HG +++ +A G RV A L G GR
Sbjct: 7 KFLEFGGNQICLCSWGSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGR 66
Query: 468 SEKPNIV--YTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLI 525
S +V Y+ L + + E+ +P+ L+G+S+G +A + P +K ++L+
Sbjct: 67 SSHLEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILV 126
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 415 GYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIV 474
G ++ + G GPA+ L HGF +R I +A G RV AI + G+G S P +
Sbjct: 245 GIRLHFVEMGS-GPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEI 303
Query: 475 ---YTELMWSELLRDFTVEVVGEP-VHLIGNSIGGYFVAIVACLWPAVVKSVVLINS 527
EL+ E++ ++ +G P IG+ G V +A +P V++V +N+
Sbjct: 304 EEYAMELLCKEMVT--FLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNT 358
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 657 DAGHCPHDEKPEEVNSIISEWIVT 680
D GH EKP EVN I+ +W+ T
Sbjct: 520 DCGHWTQIEKPTEVNQILIKWLQT 543
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 46 SAVIWFKQDLRVDDHLGL-VAASKYQAVVPLYVFDHRIL--SRYSNEM-LELVIFALEDL 101
+ F++DLR++D+ GL A S+ V+P+++ D R L + Y +E + +I +L +L
Sbjct: 2 DCIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLEL 61
Query: 102 RKSLKEQGSDLMIRFGRVENVIRELVEEVKATSV 135
L+++GS L + FG E V+ +V A V
Sbjct: 62 DDELRKKGSRLNVFFGEAEKVVSRFFNKVDAIYV 95
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
Length = 471
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQA--VVPLYVFDHRILSRY--SNEMLELVIFALEDLRK 103
++WF+QDLR+ D+L L AA + + V+ LY+ R + + S EL+ L L+
Sbjct: 4 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 63
Query: 104 SLKEQGSDLMIR----FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKV 159
+L E+G L+ R F +++++ E T +F + E + R V+ L V
Sbjct: 64 ALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNV 123
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
Length = 537
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 44 SGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRIL-----------SRYSNEML 91
SGS +IWF++ LRV D+ L ASK + + P++V D + SR +
Sbjct: 5 SGS-LIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRI 63
Query: 92 ELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAI 151
++ +L+DL SLK+ GS L++ G V+ ++E K + E + + + + +
Sbjct: 64 RFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVK 123
Query: 152 VDETLAKVSLVDGKPKICLWQTPFYDI-KNLNDLPVSHNEFRKLQRPLTSPILPPTLAGA 210
V + + + P P + I KN P+S+ F K+ P+ A +
Sbjct: 124 VKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAG-------EPSCAKS 176
Query: 211 KLEADWGPLPTFDEL 225
+L + LP ++
Sbjct: 177 ELVMSYSSLPPIGDI 191
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRD 486
G ILL HG + I +AD G RV A+ +GF +S KP
Sbjct: 46 GRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTH 105
Query: 487 FTVEVVG-EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529
+E +G +IG+S GG A L+P V+ +VL+N G
Sbjct: 106 ALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPIG 149
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGN--RVWAITLLGFGRSEKP-NIVYTELMWSE 482
EG ++L+HG G + Y + I RV A ++GFG +++P N Y++ W +
Sbjct: 24 EGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWVD 83
Query: 483 LLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530
+ + E H++GN+ GG A + V +VL+ +AG
Sbjct: 84 HIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGT 131
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGN--RVWAITLLGFGRSEKP-NIVYTELMWSE 482
EG ++L+HG G + Y + I RV A ++GFG +++P N Y++ W +
Sbjct: 24 EGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWVD 83
Query: 483 LLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530
+ + E H++GNS GG A + V +VL+ + G
Sbjct: 84 HIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGT 131
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 417 QIQYTVAGKEGPAILLVHGFGAFLE---HYRDNIYDIADGGNRVWAITLLGFGRSEKP-N 472
+I + G+ ++L+HG G ++ NI + + G RV + G+G+S+ N
Sbjct: 26 RIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVN 85
Query: 473 IVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528
+ + +L+ ++ +HL+GNS+GG+ WP V +VL+
Sbjct: 86 SGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGG 141
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana
pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana With Amppnp Bound
Length = 509
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVF-----DHRILSRYSNEMLELVIFALEDLR 102
++WF++DLRV+D+ L AA + V+ L+V+ H R S L+ +L L
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLK---NSLAQLD 71
Query: 103 KSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAK 158
SL+ G+ L+ + R + + L++ VK+T A + HL +++V + AK
Sbjct: 72 SSLRSLGTCLITK--RSTDSVASLLDVVKSTG--ASQIFFNHLYDPLSLVRDHRAK 123
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 422 VAG-KEGPAILLVHGFGA---FLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTE 477
VAG + PA++L+HG G ++R I D+A+ V A L+GFG+SE P
Sbjct: 23 VAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIGFGQSEYPETYPGH 81
Query: 478 LM-WSELLRDFTVEVVG----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529
+M W + + + ++ E H++GNS+GG + P V L+ S G
Sbjct: 82 IMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVG 138
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+G ++ Y V G +GP ++LVHGFG + + ++A V A L G G+SE P
Sbjct: 18 DGVKLHY-VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFT-VIAPDLPGLGQSEPPKT 75
Query: 474 VYT----ELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKS 521
Y+ + +L R F+ + P L+ + IG + +P VVK+
Sbjct: 76 GYSGEQVAVYLHKLARQFSPD---RPFDLVAHDIG------IWNTYPMVVKN 118
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+G ++ Y V G +GP ++LVHGFG + + ++A V A L G G+SE P
Sbjct: 18 DGVKLHY-VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFT-VIAPDLPGLGQSEPPKT 75
Query: 474 VYT----ELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKS 521
Y+ + +L R F+ + P L+ + IG + +P VVK+
Sbjct: 76 GYSGEQVAVYLHKLARQFSPD---RPFDLVAHDIG------IWNTYPMVVKN 118
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+G ++ Y V G +GP ++LVHGFG + + ++A V A L G G+SE P
Sbjct: 18 DGVKLHY-VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFT-VIAPDLPGLGQSEPPKT 75
Query: 474 VYT----ELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKS 521
Y+ + +L R F+ + P L+ + IG + +P VVK+
Sbjct: 76 GYSGEQVAVYLHKLARQFSPD---RPFDLVAHDIG------IWNTYPMVVKN 118
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 413 WNGYQIQYTVAGKEGP-----AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGR 467
+ G ++ Y EGP L +HG ++ YR + G RV A L GFGR
Sbjct: 30 FEGLRMHYV---DEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGR 86
Query: 468 SEKP--NIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLI 525
S+KP + VYT L F + E V L+ GG + P +V ++++
Sbjct: 87 SDKPTDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVM 146
Query: 526 NSA 528
N+A
Sbjct: 147 NTA 149
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVVG----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA--GNVIPEYSFLQFSNE 543
++ + L+ GG+ + P+ K ++++N+ + + + +F F
Sbjct: 108 ALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVT- 166
Query: 544 RQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGV 597
Q + L+ L + F+K+ PT E + SY GV
Sbjct: 167 -QPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGV 219
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVVG----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA--GNVIPEYSFLQFSNE 543
++ + L+ GG+ + P+ K ++++N+ + + + +F F
Sbjct: 108 ALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVT- 166
Query: 544 RQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGV 597
Q + L+ L + F+K+ PT E + SY GV
Sbjct: 167 -QPADGFTAYKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGV 219
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVVG----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA--GNVIPEYSFLQFSNE 543
++ + L+ GG+ + P+ K ++++N+ + + + +F F
Sbjct: 108 ALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVT- 166
Query: 544 RQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGV 597
Q + L+ L + F+K+ PT E + SY GV
Sbjct: 167 -QPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGV 219
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVVG----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA--GNVIPEYSFLQFSNE 543
++ + L+ GG+ + P+ K ++++N+ + + + +F F
Sbjct: 108 ALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVT- 166
Query: 544 RQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGV 597
Q + L+ L + F+K+ PT E + SY GV
Sbjct: 167 -QPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGV 219
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVVG----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA--GNVIPEYSFLQFSNE 543
++ + L+ GG+ + P+ K ++++N+ + + + +F F
Sbjct: 108 ALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVT- 166
Query: 544 RQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGV 597
Q + L+ L + F+K+ PT E + SY GV
Sbjct: 167 -QPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGV 219
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 425 KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELL 484
++GP ++L+HGF +R I +A G RV AI G+GRS K + + +
Sbjct: 31 QQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK-----YRVQKAYRI 85
Query: 485 RDFTVEVVG-------EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLIN 526
++ +VVG E ++G+ G A L P VV I+
Sbjct: 86 KELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGIS 134
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 425 KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELL 484
++GP ++L+HGF +R I +A G RV AI G+GRS K + + +
Sbjct: 25 QQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK-----YRVQKAYRI 79
Query: 485 RDFTVEVVG-------EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLIN 526
++ +VVG E ++G+ G A L P VV I+
Sbjct: 80 KELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGIS 128
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 10/174 (5%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
L +HG + YR I A+ G RV A GFG+S+KP V E E R+F +
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKP--VDEEDYTFEFHRNFLL 107
Query: 490 EVVG----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA--GNVIPEYSFLQFSNE 543
++ + L+ GG+ + P+ K ++++N+ + + + +F F +
Sbjct: 108 ALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQ 167
Query: 544 RQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGV 597
A G L+ L + F+K+ PT E + SY GV
Sbjct: 168 -PADGWTAWKYDLVT-PSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGV 219
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 430 ILLVHG------FGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSEL 483
++LVHG F ++++ D+ G +V+ L GF + PN +L+
Sbjct: 10 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNGRGEQLL--AY 67
Query: 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINS 527
++ V+LIG+S GG VA + P +V SV I +
Sbjct: 68 VKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGT 111
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 430 ILLVHG------FGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSEL 483
++LVHG F ++++ D+ G +V+ L GF + PN +L+
Sbjct: 11 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNGRGEQLL--AY 68
Query: 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINS 527
++ V+LIG+S GG VA + P +V SV I +
Sbjct: 69 VKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGT 112
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 110/276 (39%), Gaps = 40/276 (14%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIAD-GGNRVWAITLLGFGRS----EKPNIVYTELMWSELL 484
++++HG +Y NI +AD G V +G G S + P +T ++ +
Sbjct: 57 LIVLHGGPGMAHNYVANIAALADETGRTVIHYDQVGCGNSTHLPDAPADFWTPQLFVDEF 116
Query: 485 RDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINS----------AGNV--- 531
+ E H++G S GG A +A P+ + S+ + NS AG++
Sbjct: 117 HAVCTALGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAGDLRAQ 176
Query: 532 IPEYSFLQFSNERQASGPIRLGAQLLL---FYLRLNISNFVKQCYPTRRERADDWLISEM 588
+P + + +A+G I L FY R V + PT ++ AD +++M
Sbjct: 177 LPAETRAAL-DRHEAAGTITHPDYLQAAAEFYRR-----HVCRVVPTPQDFADS--VAQM 228
Query: 589 LRASYDPGVLVVLESIFSFKLSLPLN-----YLLEGFKEKVLIIQGIKDPISDSKSKVAM 643
+P V + F + L L VL+I G D + +
Sbjct: 229 ---EAEPTVYHTMNGPNEFHVVGTLGDWSVIDRLPDVTAPVLVIAGEHDEATPKTWQP-- 283
Query: 644 FKEHCAGIVIRELDA-GHCPHDEKPEEVNSIISEWI 678
F +H + HC H EKPEE +++++++
Sbjct: 284 FVDHIPDVRSHVFPGTSHCTHLEKPEEFRAVVAQFL 319
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 430 ILLVHG------FGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSEL 483
++LVHG F ++++ D+ G +V+ L GF + PN +L+
Sbjct: 11 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNGRGEQLL--AY 68
Query: 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINS 527
++ V+LIG+S GG VA + P +V SV I +
Sbjct: 69 VKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGT 112
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 430 ILLVHG------FGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSEL 483
I+LVHG + LE++ D+ G V+ L GF + PN +L+
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNGRGEQLL--AY 68
Query: 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINS 527
++ V+L+G+S GG VA + P +V SV I +
Sbjct: 69 VKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGT 112
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus
Thermophilus
pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex
pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore
pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna
Chromophore
pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore
Length = 420
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
G ++W + DLR+ DH L+ A VV L V D L + + + + LR++
Sbjct: 2 GPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNL-KTTPRRRAWFLENVRALREA 60
Query: 105 LKEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137
+ +G L + G + E +KA +V+A
Sbjct: 61 YRARGGALWVLEGLPWEKVPEAARRLKAKAVYA 93
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 421 TVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP-----NIVY 475
V G GPA+LL+HGF L H + + V L G+G S KP + Y
Sbjct: 19 CVVGGSGPALLLLHGFPQNL-HMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANY 77
Query: 476 TELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEY 535
+ + R+ + E HL+G++ GG +A P V S+ ++ ++IP Y
Sbjct: 78 SFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVL----DIIPTY 133
Query: 536 SFLQ 539
+
Sbjct: 134 VMFE 137
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 112/280 (40%), Gaps = 32/280 (11%)
Query: 422 VAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWS 481
V G +LL+HG+ + I + V A L G+G S +P V + +S
Sbjct: 20 VKAGHGAPLLLLHGYPQTHVMWH-KIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYS 78
Query: 482 E-LLRDFTVEVVG----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYS 536
+ ++ VEV+ E +++G+ G +A P VK + L++ + P +
Sbjct: 79 KRVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLD----IAPTHK 134
Query: 537 FLQFSNERQASG---------PIRLGAQLL----LFYLRLNISNFVKQCYPTRRERADDW 583
+ +++ A+ P L L+ +YLR + + K + +A
Sbjct: 135 MYRTTDQEFATAYYHWFFLIQPDNLPETLIGANPEYYLRKCLEKWGKD-FSAFHPQA--- 190
Query: 584 LISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEK----VLIIQGIKDPISDSKS 639
++E +R P V+ + ++ L + K+K VL++ G K I
Sbjct: 191 -LAEYIRCFSQPAVIHATCEDYRAAATIDLEHDELDMKQKISCPVLVLWGEKGIIGRKYD 249
Query: 640 KVAMFKEHCAGIVIRELDAGHCPHDEKPEEVNSIISEWIV 679
+A ++E + + L GH +E PEE I ++
Sbjct: 250 VLATWRERAIDVSGQSLPCGHFLPEEAPEETYQAIYNFLT 289
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 430 ILLVHG------FGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSEL 483
I+LVHG + LE++ D+ G V+ L GF + PN +L+
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNGRGEQLL--AY 68
Query: 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINS 527
++ V+L+G+S GG VA + P +V SV I +
Sbjct: 69 VKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGT 112
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 421 TVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP-----NIVY 475
V G GPA+LL+HGF L H + + V L G+G S KP + Y
Sbjct: 19 CVVGGSGPALLLLHGFPQNL-HMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANY 77
Query: 476 TELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEY 535
+ + R+ + E HL+G+ GG +A P V S+ ++ ++IP Y
Sbjct: 78 SFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVL----DIIPTY 133
Query: 536 SFLQ 539
+
Sbjct: 134 VMFE 137
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 101/260 (38%), Gaps = 32/260 (12%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
I + HG G Y + + V+A +G G+SE +V ++ + +RD
Sbjct: 45 IFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSD--FHVFVRDVLQ 102
Query: 490 EV-------VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSN 542
V G PV L+G+S+GG + A P +VLI S L +N
Sbjct: 103 HVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLI----------SPLVLAN 152
Query: 543 ERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGV---LV 599
A+ L A++L L S + +R + D S+ L V +
Sbjct: 153 PESATTFKVLAAKVLNSVLPNLSSGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQ 212
Query: 600 VLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSK---VAMFKEHCAGIVIREL 656
+L ++ + +LP L++QG D + DSK + + K + I E
Sbjct: 213 LLNAVSRVERALP------KLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYE- 265
Query: 657 DAGHCPHDEKPEEVNSIISE 676
A H H E PE NS+ E
Sbjct: 266 GAYHVLHKELPEVTNSVFHE 285
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 102/263 (38%), Gaps = 38/263 (14%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
I + HG G Y + + V+A +G G+SE +V ++ + +RD
Sbjct: 63 IFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSD--FHVFVRDVLQ 120
Query: 490 EV-------VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSN 542
V G PV L+G+S+GG + A P +VLI S L +N
Sbjct: 121 HVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLI----------SPLVLAN 170
Query: 543 ERQASGPIRLGAQLLLFYL-RLNISNFVKQCYPTRRERAD----DWLISEM-LRASYDPG 596
A+ L A++L L L++ + D D LI L+ +
Sbjct: 171 PESATTFKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFG-- 228
Query: 597 VLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSK---VAMFKEHCAGIVI 653
+ +L ++ + +LP L++QG D + DSK + + K + I
Sbjct: 229 -IQLLNAVSRVERALP------KLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKI 281
Query: 654 RELDAGHCPHDEKPEEVNSIISE 676
E A H H E PE NS+ E
Sbjct: 282 YE-GAYHVLHKELPEVTNSVFHE 303
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 102/263 (38%), Gaps = 38/263 (14%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
I + HG G Y + + V+A +G G+SE +V ++ + +RD
Sbjct: 62 IFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSD--FHVFVRDVLQ 119
Query: 490 EV-------VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSN 542
V G PV L+G+S+GG + A P +VLI S L +N
Sbjct: 120 HVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLI----------SPLVLAN 169
Query: 543 ERQASGPIRLGAQLLLFYL-RLNISNFVKQCYPTRRERAD----DWLISEM-LRASYDPG 596
A+ L A++L L L++ + D D LI L+ +
Sbjct: 170 PESATTFKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFG-- 227
Query: 597 VLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSK---VAMFKEHCAGIVI 653
+ +L ++ + +LP L++QG D + DSK + + K + I
Sbjct: 228 -IQLLNAVSRVERALP------KLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKI 280
Query: 654 RELDAGHCPHDEKPEEVNSIISE 676
E A H H E PE NS+ E
Sbjct: 281 YE-GAYHVLHKELPEVTNSVFHE 302
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 450 IADGGNRVWAITLLGFGRSEKP-NIVYTELMWSE-LLRDFTVEVVGEPVHLIGNSIGGYF 507
+ G+RV A+ L G +P V T +S+ L+ E V L+G S GG
Sbjct: 27 LESAGHRVTAVELAASGIDPRPIQAVETVDEYSKPLIETLKSLPENEEVILVGFSFGGIN 86
Query: 508 VAIVACLWPAVVKSVVLINS 527
+A+ A ++PA +K +V +N+
Sbjct: 87 IALAADIFPAKIKVLVFLNA 106
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRS 468
NG + G EGP IL +HGF +R + +A+ G R A L G+G +
Sbjct: 19 NGLNMHLAELG-EGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDT 72
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 9/151 (5%)
Query: 394 MSLRSLRSNEGVYSTRIWRWNGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIAD 452
+SL +R STR Q +G E P ++L+HG + NI D +
Sbjct: 38 LSLWPVRCKSFYISTRFG-----QTHVIASGPEDAPPLVLLHGALFSSTXWYPNIADWS- 91
Query: 453 GGNRVWAITLLGFGRSEKP-NIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIV 511
R +A+ ++G P N+ T ++ L D + E H IG S+GG
Sbjct: 92 SKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKSHXIGLSLGGLHTXNF 151
Query: 512 ACLWPAVVKSVVLINSAGNVIP-EYSFLQFS 541
P VKS +++ A +P + F +++
Sbjct: 152 LLRXPERVKSAAILSPAETFLPFHHDFYKYA 182
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRS 468
NG + G EGP IL +HGF +R + +A+ G R A L G+G +
Sbjct: 19 NGLNMHLAELG-EGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDT 72
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 416 YQIQYTVAGKEGPAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITLLGFGRSEKPN 472
+ I Y AG G ++++HG G +Y N+ D G RV GF +S+
Sbjct: 23 FNIHYNEAGN-GETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDA-- 79
Query: 473 IVYTE---LMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529
+V E L+ + ++ + + HL+GNS+GG A +P + ++L+ G
Sbjct: 80 VVMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGG 139
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 416 YQIQYTVAGKEGPAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITLLGFGRSEKPN 472
+ I Y AG G ++++HG G +Y N+ D G RV GF +S+
Sbjct: 23 FNIHYNEAGN-GETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDA-- 79
Query: 473 IVYTE---LMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529
+V E L+ + ++ + + HL+GNS+GG A +P + ++L+ G
Sbjct: 80 VVMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGG 139
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 401 SNEGVYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAI 460
S+E ++ R G I Y G P +L +HG +R+ I + G R A
Sbjct: 4 SSEFPFAKRTVEVEGATIAYVDEGSGQP-VLFLHGNPTSSYLWRNIIPYVVAAGYRAVAP 62
Query: 461 TLLGFGRSEKPNIVY 475
L+G G S KP+I Y
Sbjct: 63 DLIGXGDSAKPDIEY 77
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 496 VHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNV 531
++L+G+S GG +++A L+P ++K VVL+ A +
Sbjct: 121 IYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATL 156
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 414 NGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE+P
Sbjct: 13 NGIYIYYKLCKAPEEKAKLMTMHGAPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEP 72
Query: 472 NIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGGYFVAIVACLWPAVVKSV 522
+ S+ D+ VE E V L+G+S GG A + +K +
Sbjct: 73 D-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGL 125
Query: 523 VLINSAGNV 531
++ +V
Sbjct: 126 IVSGGLSSV 134
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 20/137 (14%)
Query: 414 NGYQIQYTVAGKEGPAILLVHG--------FGAFLEHYRDNIYDIADGGNRVWAITLLGF 465
NG Q+ Y G+ A+LL+ G FG L++ ++ + R G+
Sbjct: 10 NGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPR-------GY 62
Query: 466 GRSEKPNIVYTELMWSELLRDFTVEVVG----EPVHLIGNSIGGYFVAIVACLWPAVVKS 521
G S P+ + + +D V+++ + V L+G S GG I A +P+ +
Sbjct: 63 GHSRPPDRDFPADFFERDAKD-AVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHK 121
Query: 522 VVLINSAGNVIPEYSFL 538
+V+ + V E S +
Sbjct: 122 MVIWGANAYVTDEDSMI 138
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 20/137 (14%)
Query: 414 NGYQIQYTVAGKEGPAILLVHG--------FGAFLEHYRDNIYDIADGGNRVWAITLLGF 465
NG Q+ Y G+ A+LL+ G FG L++ ++ + R G+
Sbjct: 10 NGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPR-------GY 62
Query: 466 GRSEKPNIVYTELMWSELLRDFTVEVVG----EPVHLIGNSIGGYFVAIVACLWPAVVKS 521
G S P+ + + +D V+++ + V L+G S GG I A +P+ +
Sbjct: 63 GHSRPPDRDFPADFFERDAKD-AVDLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHK 121
Query: 522 VVLINSAGNVIPEYSFL 538
+V+ + V E S +
Sbjct: 122 MVIWGANAYVTDEDSMI 138
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 98/263 (37%), Gaps = 38/263 (14%)
Query: 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV 489
I + HG G Y + + V+A +G G+SE V ++ + +RD
Sbjct: 62 IFVSHGAGEHSGRYEELARXLXGLDLLVFAHDHVGHGQSEGERXVVSD--FHVFVRDVLQ 119
Query: 490 EV-------VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSN 542
V G PV L+G+S GG + A P VLI S L +N
Sbjct: 120 HVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLI----------SPLVLAN 169
Query: 543 ERQASGPIRLGAQLLLFYL-RLNISNFVKQCYPTRRERAD----DWLISEM-LRASYDPG 596
A+ L A++L L L++ + D D LI L+ +
Sbjct: 170 PESATTFKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFG-- 227
Query: 597 VLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSK---VAMFKEHCAGIVI 653
+ +L ++ + +LP L++QG D + DSK + K + I
Sbjct: 228 -IQLLNAVSRVERALP------KLTVPFLLLQGSADRLCDSKGAYLLXELAKSQDKTLKI 280
Query: 654 RELDAGHCPHDEKPEEVNSIISE 676
E A H H E PE NS+ E
Sbjct: 281 YE-GAYHVLHKELPEVTNSVFHE 302
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 414 NGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE+P
Sbjct: 13 NGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEP 72
Query: 472 NIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGGYFVAIVACLWPAVVKSV 522
+ S+ D+ VE E V L+G+S GG A + +K +
Sbjct: 73 D-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGL 125
Query: 523 VLINSAGNV 531
++ +V
Sbjct: 126 IVSGGLSSV 134
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 414 NGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE+P
Sbjct: 13 NGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEP 72
Query: 472 NIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGGYFVAIVACLWPAVVKSV 522
+ S+ D+ VE E V L+G+S GG A + +K +
Sbjct: 73 D-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGL 125
Query: 523 VLINSAGNV 531
++ +V
Sbjct: 126 IVSGGLSSV 134
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 414 NGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE+P
Sbjct: 13 NGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEP 72
Query: 472 NIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGGYFVAIVACLWPAVVKSV 522
+ S+ D+ VE E V L+G+S GG A + +K +
Sbjct: 73 D-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGL 125
Query: 523 VLINSAGNV 531
++ +V
Sbjct: 126 IVSGGLSSV 134
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 414 NGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE+P
Sbjct: 13 NGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEP 72
Query: 472 NIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGGYFVAIVACLWPAVVKSV 522
+ S+ D+ VE E V L+G+S GG A + +K +
Sbjct: 73 D-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGL 125
Query: 523 VLINSAGNV 531
++ +V
Sbjct: 126 IVSGGLSSV 134
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 416 YQIQYTVAGKEGPAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITLLGFGRSEKPN 472
+ I Y AG G ++++HG G +Y N+ D G RV GF +S+
Sbjct: 23 FNIHYNEAGN-GETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDA-- 79
Query: 473 IVYTE---LMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529
+V E L+ + ++ + + HL+GN++GG A +P + ++L+ G
Sbjct: 80 VVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGG 139
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 416 YQIQYTVAGKEGPAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITLLGFGRSEKPN 472
+ I Y AG G ++++HG G +Y N+ D G RV GF +S+
Sbjct: 23 FNIHYNEAGN-GETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDA-- 79
Query: 473 IVYTE---LMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529
+V E L+ + ++ + + HL+GN++GG A +P + ++L+ G
Sbjct: 80 VVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGG 139
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 416 YQIQYTVAGKEGPAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITLLGFGRSEKPN 472
+ I Y AG G ++++HG G +Y N+ D G RV GF +S+
Sbjct: 23 FNIHYNEAGN-GETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDA-- 79
Query: 473 IVYTE---LMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529
+V E L+ + ++ + + HL+GN++GG A +P + ++L+ G
Sbjct: 80 VVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGG 139
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 416 YQIQYTVAGKEGPAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITLLGFGRSEKPN 472
+ I Y AG G ++++HG G +Y N+ D G RV GF +S+
Sbjct: 20 FNIHYNEAGN-GETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDA-- 76
Query: 473 IVYTE---LMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529
+V E L+ + ++ + + HL+GN++GG A +P + ++L+ G
Sbjct: 77 VVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGG 136
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 496 VHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNV 531
++L+G++ GG +++A L+P ++K VVL+ A +
Sbjct: 121 IYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATL 156
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G + Y G ++ P +L +HG H NI + A L+GFG+S KP+I
Sbjct: 16 GSSMAYRETGAQDAPVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDI 74
Query: 474 VY 475
Y
Sbjct: 75 AY 76
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G + Y G ++ P +L +HG H NI + A L+GFG+S KP+I
Sbjct: 16 GSSMAYRETGAQDAPVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDI 74
Query: 474 VY 475
Y
Sbjct: 75 AY 76
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G + Y G ++ P +L +HG H NI + A L+GFG+S KP+I
Sbjct: 16 GSSMAYRETGAQDAPVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDI 74
Query: 474 VY 475
Y
Sbjct: 75 AY 76
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 223 DELKEFVN-ENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSF 281
D++KE +N + P KL +L ++ +E I L++ ++ ++L + H D +
Sbjct: 114 DKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV 173
Query: 282 FVTDKGNTVGGGTNAVLNALQAYLRYLEGTVR 313
FVT++ GG A L+ YLR +G R
Sbjct: 174 FVTNQVQANGGHILAHSATLRVYLRKGKGGKR 205
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 417 QIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+I Y G GP +LL+HG+ F + I +A+ + + L GFG SEKP++
Sbjct: 20 KIHYVREGA-GPTLLLLHGWPGFWWEWSKVIGPLAEHYDVI-VPDLRGFGDSEKPDL 74
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 496 VHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNV 531
++L+G++ GG +++A L+P ++K VVL+ A +
Sbjct: 121 IYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATL 156
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 424 GKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE-KPNIVYTELMWSE 482
G P ++ +HG G H D + I G A+ L G G S + + Y+ + SE
Sbjct: 78 GGSAPRVIFLHGGGQN-AHTWDTV--IVGLGEPALAVDLPGHGHSAWREDGNYSPQLNSE 134
Query: 483 LLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFL 538
L E+ ++G S+GG +A + P +V +VL++ + + ++ L
Sbjct: 135 TLAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAEL 190
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 20/137 (14%)
Query: 414 NGYQIQYTVAGKEGPAILLVHG--------FGAFLEHYRDNIYDIADGGNRVWAITLLGF 465
NG Q+ Y G+ A+LL+ G FG L++ ++ + R G+
Sbjct: 10 NGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPR-------GY 62
Query: 466 GRSEKPNIVYTELMWSELLRDFTVEVVG----EPVHLIGNSIGGYFVAIVACLWPAVVKS 521
G S P+ + + +D V+++ + V L+G + GG I A +P+ +
Sbjct: 63 GHSRPPDRDFPADFFERDAKD-AVDLMKALKFKKVSLLGWADGGITALIAAAKYPSYIHK 121
Query: 522 VVLINSAGNVIPEYSFL 538
+V+ + V E S +
Sbjct: 122 MVIWGANAYVTDEDSMI 138
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 98/247 (39%), Gaps = 32/247 (12%)
Query: 414 NGYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN 472
+G I Y G ++G ++ HG+ + + + + G RV A G GRS++P+
Sbjct: 7 DGTNIFYKDWGPRDGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPS 66
Query: 473 IVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVA-IVACLWPAVVKSVVLINSAGNV 531
+ ++ + T + IG+S GG VA VA P V VL+++ V
Sbjct: 67 TGHDMDTYAADVAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPV 126
Query: 532 I------PEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERA----- 580
+ P+ L+ +E +A+ L A FY+ + F Y RE A
Sbjct: 127 MVKSDTNPDGLPLEVFDEFRAA----LAANRAQFYIDVPSGPF----YGFNREGATVSQG 178
Query: 581 --DDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKD---PIS 635
D W + M+ A+ E I +F L+ VL+ G D P +
Sbjct: 179 LIDHWWLQGMMGAAN-----AHYECIAAFS-ETDFTDDLKRIDVPVLVAHGTDDQVVPYA 232
Query: 636 DSKSKVA 642
D+ K A
Sbjct: 233 DAAPKSA 239
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 414 NGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP 471
NG I Y + A +E ++ +HG Y ++ D+ G V G GRSE+P
Sbjct: 13 NGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSEEP 72
Query: 472 NIVYTELMWSELLRDFTVEVV---------GEPVHLIGNSIGGYFVAIVACLWPAVVKSV 522
+ S+ D+ VE E V L+G++ GG A + +K +
Sbjct: 73 D-------QSKFTIDYGVEEAEALRSKLFGNEKVFLMGSAYGGALALAYAVKYQDHLKGL 125
Query: 523 VLINSAGNV 531
++ +V
Sbjct: 126 IVSGGLSSV 134
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 77
Query: 474 VY 475
Y
Sbjct: 78 DY 79
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 16 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 74
Query: 474 VY 475
Y
Sbjct: 75 DY 76
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 415 GYQIQYTVAG-KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
G ++ Y G ++G +L +HG +R+ I +A +R A L+G G+S+KP++
Sbjct: 16 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPS-HRCIAPDLIGMGKSDKPDL 74
Query: 474 VY 475
Y
Sbjct: 75 DY 76
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
GS+ I + D + G +AAS+ R+LS Y N VIFAL++LR+
Sbjct: 332 GSSTIMDQVDAALGLEPGKLAASR------------RVLSDYGNMSGATVIFALDELRRQ 379
Query: 105 LKEQGS 110
KE +
Sbjct: 380 RKEAAA 385
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 223 DELKEFVN-ENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSF 281
D +KE +N + P KL +L ++ +E I L++ ++ ++L + H D +
Sbjct: 114 DMIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV 173
Query: 282 FVTDKGNTVGGGTNAVLNALQAYLRYLEGTVR 313
FVT++ GG A L+ YLR +G R
Sbjct: 174 FVTNQVQANGGHILAHSATLRVYLRKGKGGKR 205
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKS 104
GS+ I + D + G +AAS+ R+LS Y N VIFAL++LR+
Sbjct: 302 GSSTIMDQVDAALGLEPGKLAASR------------RVLSDYGNMSGATVIFALDELRRQ 349
Query: 105 LKEQGS 110
KE +
Sbjct: 350 RKEAAA 355
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 26/106 (24%)
Query: 401 SNEGVYSTRIWRWNGYQIQYTVAGKEGPAI--------------------------LLVH 434
+N GV++++++ + Q + K GP + +LV
Sbjct: 76 ANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXETSFLGALANQPLSVLVE 135
Query: 435 GFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMW 480
G + Y+ ++D G A+T +G+G S+ N + + W
Sbjct: 136 AGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKNSW 181
>pdb|3T79|A Chain A, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
pdb|3T79|D Chain D, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
Length = 402
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 22 LRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR 81
L +Y S A + A+IWF + L ++++ LV + +V L FD
Sbjct: 45 LSQKYIVKYIASHDDIAKDPLPTCDAMIWFSRALDIENNDVLVLQQRLYGLVKLLEFD-- 102
Query: 82 ILSRYSNEMLELVIFALEDLRKSLKEQGSDLMI--RFGRVENVIRELVE-EVK-ATSVFA 137
YSN VI L+ + +L +D + F ++ ++ L++ + K T+V
Sbjct: 103 ----YSN-----VIAILQKISINLWNPSTDSLQSKHFKTCQDKLKLLLDFQWKFNTNVSF 153
Query: 138 EEEVEYHLRQMMAIVDETLAKVSLV-DGKPKICL---WQTPF 175
E+ L+ + I+D+ K L KP L +Q+PF
Sbjct: 154 EDRTTVSLKDLQCILDDENGKCGLAHSSKPNFVLVPNFQSPF 195
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 114/282 (40%), Gaps = 42/282 (14%)
Query: 423 AGKEGPAILLVHGFG-AFLEHYRDNIYDIADGGNRVWAITLLGFGRS--EKPNIVYTELM 479
+G EGP +LL+HG G + L I+ R+ A+ L G + + P + E M
Sbjct: 34 SGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETM 93
Query: 480 WSELLRDFTVEVVGE---PVHLIGNSIGGYFVAIVAC--LWPAVVKSVVLINSAGNVIPE 534
+ + + + G+ P+ LIG+S+GG A L P+++ ++ G +
Sbjct: 94 AKD-VGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVVEGTAMDA 152
Query: 535 YSFLQF----------SNERQASGPIRLGAQLLLFYLRLNISNFVKQC------YPTRRE 578
+ +Q S E ++ G L R+++ VKQC ++++
Sbjct: 153 LNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKKD 212
Query: 579 RADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSK 638
W I Y G L ++F LS P+ K+L++ G+ D
Sbjct: 213 HPYTWRIELAKTEKYWDGWFRGLSNLF---LSCPI--------PKLLLLAGV-----DRL 256
Query: 639 SKVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIV 679
K + ++ L GH H++ P++V ++ +++
Sbjct: 257 DKDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLI 298
>pdb|3SQI|A Chain A, Dna Binding Domain Of Ndc10
Length = 534
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 22 LRSRYKCVCCVSPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHR 81
L +Y S A + A+IWF + L ++++ LV + +V L FD
Sbjct: 45 LSQKYIVKYIASHDDIAKDPLPTCDAMIWFSRALDIENNDVLVLQQRLYGLVKLLEFD-- 102
Query: 82 ILSRYSNEMLELVIFALEDLRKSLKEQGSDLMI--RFGRVENVIRELVE-EVK-ATSVFA 137
YSN VI L+ + +L +D + F ++ ++ L++ + K T+V
Sbjct: 103 ----YSN-----VIAILQKISINLWNPSTDSLQSKHFKTCQDKLKLLLDFQWKFNTNVSF 153
Query: 138 EEEVEYHLRQMMAIVDETLAKVSLV-DGKPKICL---WQTPF 175
E+ L+ + I+D+ K L KP L +Q+PF
Sbjct: 154 EDRTTVSLKDLQCILDDENGKCGLAHSSKPNFVLVPNFQSPF 195
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 459 AITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAV 518
A+ G G S+KP Y +++ + + L+G+S+G A +P +
Sbjct: 99 AVDQRGHGLSDKPETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDL 158
Query: 519 VKSVVLIN 526
V+SVV I+
Sbjct: 159 VRSVVAID 166
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRD 486
G ++L+HGF + + D G RV GFG+S +P Y ++ L
Sbjct: 24 GVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNT 83
Query: 487 FTVEVVGEPVHLIGNSIG-GYFVAIVACLWPAVVKSVVLINS 527
+ + L+G S+G G V+ A + +V + S
Sbjct: 84 VLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLAS 125
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+G QI + G P +L HG+ + + + ++ G R A GFGRS++P
Sbjct: 7 DGTQIYFKDWGSGKP-VLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWT 65
Query: 474 VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVA-IVACLWPAVVKSVVLINSAGNVI 532
+++ + + + V L+G S+GG VA +A A V +VL+ + +
Sbjct: 66 GNDYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPIF 125
Query: 533 ---PEY 535
P+Y
Sbjct: 126 GQKPDY 131
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 414 NGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI 473
+G QI + G P +L HG+ + + + ++ G R A GFGRS++P
Sbjct: 7 DGTQIYFKDWGSGKP-VLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWT 65
Query: 474 VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVA-IVACLWPAVVKSVVLINSAGNVI 532
+++ + + + V L+G S+GG VA +A A V +VL+ G V
Sbjct: 66 GNDYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLL---GAVT 122
Query: 533 PEYS 536
P +
Sbjct: 123 PLFG 126
>pdb|1VKI|A Chain A, Crystal Structure Of A Putative Oligo-Nucleotide Binding
Protein (Atu3699, Agr_l_2275) From Agrobacterium
Tumefaciens Str. C58 At 1.60 A Resolution
pdb|1VKI|B Chain B, Crystal Structure Of A Putative Oligo-Nucleotide Binding
Protein (Atu3699, Agr_l_2275) From Agrobacterium
Tumefaciens Str. C58 At 1.60 A Resolution
Length = 181
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156
A+ DL+ K G+ + FGR E ++ L + +VF + RQ+ ++D L
Sbjct: 82 AVVDLKSVHKTIGAASRVSFGRPEKMLEYLGVVPGSVTVFG--AINDTARQVTFVLDSDL 139
Query: 157 AKVSLVDGKP 166
+ LV+G P
Sbjct: 140 LENELVNGHP 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,420,905
Number of Sequences: 62578
Number of extensions: 856413
Number of successful extensions: 2244
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 2158
Number of HSP's gapped (non-prelim): 137
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)