Query 005554
Match_columns 691
No_of_seqs 558 out of 3393
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 01:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02765 crypto_DASH cryptoch 100.0 6.8E-42 1.5E-46 370.0 24.1 251 46-361 2-269 (429)
2 COG0415 PhrB Deoxyribodipyrimi 100.0 1.1E-41 2.5E-46 353.5 20.1 246 45-362 2-257 (461)
3 TIGR03556 photolyase_8HDF deox 100.0 5.8E-41 1.3E-45 363.7 22.4 246 46-361 2-264 (471)
4 TIGR02766 crypt_chrom_pln cryp 100.0 4.4E-39 9.5E-44 351.6 20.6 243 48-357 1-255 (475)
5 PRK10674 deoxyribodipyrimidine 100.0 7.5E-39 1.6E-43 347.3 21.5 241 47-359 4-259 (472)
6 TIGR00591 phr2 photolyase PhrI 100.0 1.4E-38 3E-43 346.1 22.3 250 41-358 19-279 (454)
7 PLN02824 hydrolase, alpha/beta 100.0 1.8E-31 3.9E-36 276.3 30.6 276 403-681 5-294 (294)
8 PF00875 DNA_photolyase: DNA p 100.0 6E-33 1.3E-37 259.9 15.0 155 47-205 1-164 (165)
9 PRK03592 haloalkane dehalogena 100.0 5.5E-30 1.2E-34 265.3 27.0 273 404-683 5-291 (295)
10 KOG4178 Soluble epoxide hydrol 100.0 5.8E-30 1.2E-34 251.5 23.5 277 404-681 20-320 (322)
11 PLN02679 hydrolase, alpha/beta 100.0 4.6E-29 1E-33 264.5 31.7 272 409-682 64-358 (360)
12 TIGR02240 PHA_depoly_arom poly 100.0 2.4E-29 5.2E-34 257.8 26.0 267 406-685 2-270 (276)
13 PLN02578 hydrolase 100.0 1.9E-28 4.1E-33 259.5 30.9 268 408-679 68-353 (354)
14 PRK00870 haloalkane dehalogena 100.0 3.2E-28 6.9E-33 252.9 26.4 266 401-681 14-301 (302)
15 KOG0133 Deoxyribodipyrimidine 100.0 5.2E-29 1.1E-33 261.2 14.8 263 45-370 5-287 (531)
16 PRK03204 haloalkane dehalogena 100.0 3.3E-27 7.1E-32 242.7 27.8 265 404-678 12-285 (286)
17 PRK10349 carboxylesterase BioH 100.0 2.7E-27 5.8E-32 240.0 25.7 250 417-680 3-255 (256)
18 TIGR03056 bchO_mg_che_rel puta 100.0 4.9E-27 1.1E-31 240.9 27.2 268 405-679 5-278 (278)
19 TIGR03343 biphenyl_bphD 2-hydr 100.0 1.6E-26 3.6E-31 237.7 27.7 256 415-680 19-282 (282)
20 PLN02965 Probable pheophorbida 100.0 2.4E-27 5.2E-32 239.9 20.2 243 429-682 5-254 (255)
21 PRK06489 hypothetical protein; 100.0 2.1E-26 4.6E-31 244.6 28.3 268 413-683 47-359 (360)
22 PLN03087 BODYGUARD 1 domain co 100.0 4.9E-26 1.1E-30 244.3 30.8 272 405-680 175-478 (481)
23 PRK08775 homoserine O-acetyltr 99.9 3E-26 6.4E-31 242.0 23.3 270 405-683 35-341 (343)
24 PLN03084 alpha/beta hydrolase 99.9 2.1E-25 4.6E-30 235.1 29.4 259 411-680 110-383 (383)
25 PRK10673 acyl-CoA esterase; Pr 99.9 3.3E-25 7.2E-30 224.4 26.6 234 427-680 16-254 (255)
26 TIGR02427 protocat_pcaD 3-oxoa 99.9 2.8E-25 6.1E-30 223.2 24.7 247 418-679 2-251 (251)
27 PLN02385 hydrolase; alpha/beta 99.9 1.2E-25 2.6E-30 238.1 23.1 257 409-683 65-347 (349)
28 PHA02857 monoglyceride lipase; 99.9 2.6E-25 5.6E-30 228.1 23.5 254 410-681 5-273 (276)
29 TIGR03611 RutD pyrimidine util 99.9 4.6E-25 9.9E-30 223.0 24.5 250 418-680 1-257 (257)
30 PRK11126 2-succinyl-6-hydroxy- 99.9 5.5E-25 1.2E-29 221.0 24.2 234 427-680 2-241 (242)
31 PRK07581 hypothetical protein; 99.9 4.3E-25 9.4E-30 233.2 23.5 270 412-682 22-337 (339)
32 KOG4409 Predicted hydrolase/ac 99.9 2.7E-24 6E-29 211.6 27.1 275 404-681 63-364 (365)
33 TIGR01392 homoserO_Ac_trn homo 99.9 5.2E-25 1.1E-29 233.3 24.0 267 412-679 12-351 (351)
34 TIGR01738 bioH putative pimelo 99.9 1.6E-24 3.5E-29 216.9 25.5 240 427-678 4-245 (245)
35 PRK10749 lysophospholipase L2; 99.9 1E-24 2.2E-29 228.9 24.8 262 407-681 32-329 (330)
36 PLN02211 methyl indole-3-aceta 99.9 1.8E-24 3.9E-29 220.3 24.3 259 413-681 4-270 (273)
37 PLN02894 hydrolase, alpha/beta 99.9 1.9E-23 4.2E-28 223.8 32.3 266 417-684 93-388 (402)
38 PRK00175 metX homoserine O-ace 99.9 3.4E-24 7.3E-29 228.8 26.3 272 411-683 28-376 (379)
39 KOG1454 Predicted hydrolase/ac 99.9 9.1E-25 2E-29 225.3 19.7 256 426-682 57-325 (326)
40 PLN02298 hydrolase, alpha/beta 99.9 3.7E-24 8E-29 225.3 24.2 261 409-688 36-324 (330)
41 TIGR01250 pro_imino_pep_2 prol 99.9 5.1E-24 1.1E-28 219.0 24.5 262 409-679 5-288 (288)
42 PF12697 Abhydrolase_6: Alpha/ 99.9 2.2E-24 4.8E-29 212.9 19.3 225 430-673 1-228 (228)
43 PRK14875 acetoin dehydrogenase 99.9 3.8E-23 8.3E-28 221.5 27.8 251 410-680 113-370 (371)
44 TIGR03695 menH_SHCHC 2-succiny 99.9 4E-23 8.7E-28 207.1 24.0 241 427-679 1-251 (251)
45 KOG2984 Predicted hydrolase [G 99.9 2.2E-23 4.7E-28 187.2 14.6 252 404-681 19-276 (277)
46 TIGR01249 pro_imino_pep_1 prol 99.9 4.4E-22 9.5E-27 206.9 24.9 119 410-529 8-130 (306)
47 COG2267 PldB Lysophospholipase 99.9 2E-22 4.4E-27 205.9 21.6 268 406-683 10-296 (298)
48 PLN02652 hydrolase; alpha/beta 99.9 1.2E-21 2.6E-26 208.1 28.1 255 410-683 115-389 (395)
49 PLN02980 2-oxoglutarate decarb 99.9 8.6E-22 1.9E-26 242.1 30.0 257 418-687 1360-1645(1655)
50 PRK05855 short chain dehydroge 99.9 3E-22 6.5E-27 228.0 22.9 267 408-683 5-294 (582)
51 PLN02511 hydrolase 99.9 8.2E-22 1.8E-26 210.4 18.6 244 426-683 99-367 (388)
52 KOG1455 Lysophospholipase [Lip 99.9 1.8E-21 3.9E-26 188.4 18.9 256 409-681 31-312 (313)
53 PRK06765 homoserine O-acetyltr 99.9 2.9E-20 6.2E-25 196.7 25.9 267 413-680 38-387 (389)
54 COG1647 Esterase/lipase [Gener 99.9 3.1E-20 6.7E-25 170.8 20.7 222 427-680 15-243 (243)
55 KOG2382 Predicted alpha/beta h 99.8 5.9E-20 1.3E-24 181.3 19.0 245 426-681 51-313 (315)
56 TIGR01607 PST-A Plasmodium sub 99.8 1.1E-19 2.5E-24 190.1 21.4 254 412-679 4-331 (332)
57 PRK05077 frsA fermentation/res 99.8 1.3E-17 2.8E-22 178.9 31.3 228 414-681 177-412 (414)
58 PRK10985 putative hydrolase; P 99.8 2.2E-18 4.8E-23 180.3 24.2 241 427-681 58-320 (324)
59 PRK13604 luxD acyl transferase 99.8 2.8E-18 6E-23 171.8 22.9 229 414-682 18-260 (307)
60 PF00561 Abhydrolase_1: alpha/ 99.8 3.1E-19 6.6E-24 177.3 14.2 216 455-675 1-229 (230)
61 TIGR03100 hydr1_PEP hydrolase, 99.8 9.6E-18 2.1E-22 171.0 24.7 227 427-680 26-274 (274)
62 PLN02872 triacylglycerol lipas 99.8 1.4E-17 3E-22 176.2 20.6 274 406-684 44-392 (395)
63 TIGR01836 PHA_synth_III_C poly 99.8 2.9E-17 6.3E-22 173.9 21.0 265 412-680 44-349 (350)
64 PRK10566 esterase; Provisional 99.8 2.2E-16 4.7E-21 159.2 24.8 202 427-681 27-248 (249)
65 PRK11071 esterase YqiA; Provis 99.7 1.6E-16 3.4E-21 152.1 20.9 180 428-679 2-189 (190)
66 TIGR01838 PHA_synth_I poly(R)- 99.7 4.5E-17 9.8E-22 176.8 18.7 239 427-668 188-462 (532)
67 COG0596 MhpC Predicted hydrola 99.7 2.7E-16 5.8E-21 158.3 22.5 260 413-679 7-280 (282)
68 COG2021 MET2 Homoserine acetyl 99.7 2.2E-15 4.7E-20 151.0 22.8 267 413-680 33-367 (368)
69 KOG2564 Predicted acetyltransf 99.7 6.9E-17 1.5E-21 153.3 11.0 254 418-682 62-328 (343)
70 PRK07868 acyl-CoA synthetase; 99.7 2.4E-15 5.1E-20 179.7 27.0 255 426-685 66-365 (994)
71 PF12695 Abhydrolase_5: Alpha/ 99.7 2E-15 4.4E-20 138.4 16.7 144 429-661 1-145 (145)
72 PF06342 DUF1057: Alpha/beta h 99.7 3.1E-14 6.8E-19 137.4 23.3 111 419-531 24-139 (297)
73 PF03096 Ndr: Ndr family; Int 99.6 1.4E-14 3E-19 142.1 19.7 257 409-682 2-280 (283)
74 TIGR03101 hydr2_PEP hydrolase, 99.6 4.2E-15 9.1E-20 148.5 15.6 102 427-528 25-133 (266)
75 KOG2931 Differentiation-relate 99.6 2E-13 4.3E-18 131.3 24.9 257 406-682 22-307 (326)
76 KOG1552 Predicted alpha/beta h 99.6 1.8E-14 3.8E-19 137.5 17.4 192 427-684 60-255 (258)
77 COG0429 Predicted hydrolase of 99.6 9.1E-14 2E-18 137.0 20.9 249 427-682 75-341 (345)
78 KOG1838 Alpha/beta hydrolase [ 99.6 6E-13 1.3E-17 136.4 22.8 243 426-681 124-388 (409)
79 PLN00021 chlorophyllase 99.6 1.7E-13 3.7E-18 140.8 19.2 100 426-528 51-165 (313)
80 COG3208 GrsT Predicted thioest 99.5 4.5E-13 9.8E-18 127.1 19.6 226 427-681 7-236 (244)
81 PLN02442 S-formylglutathione h 99.5 4.8E-13 1E-17 136.8 21.4 117 414-530 28-179 (283)
82 PRK11460 putative hydrolase; P 99.5 8.8E-13 1.9E-17 130.7 19.1 171 426-678 15-209 (232)
83 KOG4391 Predicted alpha/beta h 99.5 2.2E-13 4.9E-18 124.5 13.4 219 407-684 56-285 (300)
84 KOG4667 Predicted esterase [Li 99.5 3.8E-13 8.3E-18 123.2 14.8 215 426-681 32-258 (269)
85 TIGR02821 fghA_ester_D S-formy 99.5 4.4E-12 9.5E-17 129.5 24.4 117 414-530 23-174 (275)
86 KOG2565 Predicted hydrolases o 99.5 3.8E-12 8.3E-17 125.8 20.0 118 411-528 129-263 (469)
87 COG1506 DAP2 Dipeptidyl aminop 99.5 2.9E-12 6.3E-17 145.0 20.6 229 405-683 365-618 (620)
88 PF00326 Peptidase_S9: Prolyl 99.4 8.2E-12 1.8E-16 122.6 18.2 192 443-683 3-211 (213)
89 TIGR03230 lipo_lipase lipoprot 99.4 1.7E-12 3.7E-17 137.3 14.1 109 422-530 36-155 (442)
90 TIGR01839 PHA_synth_II poly(R) 99.4 1.6E-11 3.5E-16 132.0 20.2 103 427-532 215-331 (560)
91 PF05448 AXE1: Acetyl xylan es 99.4 2.2E-11 4.8E-16 125.4 19.4 269 368-680 19-319 (320)
92 cd00707 Pancreat_lipase_like P 99.4 1.1E-12 2.3E-17 133.2 9.3 116 415-530 24-148 (275)
93 TIGR01840 esterase_phb esteras 99.4 3.7E-11 8.1E-16 117.7 18.3 104 426-529 12-130 (212)
94 TIGR03502 lipase_Pla1_cef extr 99.4 4E-11 8.6E-16 134.5 20.5 127 404-530 416-602 (792)
95 TIGR01849 PHB_depoly_PhaZ poly 99.4 1.9E-10 4.1E-15 120.5 24.2 250 428-680 103-405 (406)
96 TIGR00976 /NonD putative hydro 99.3 2.9E-11 6.4E-16 135.6 18.6 116 414-530 5-133 (550)
97 PF00975 Thioesterase: Thioest 99.3 4.4E-11 9.6E-16 118.8 16.5 99 428-528 1-103 (229)
98 PF06500 DUF1100: Alpha/beta h 99.3 8.3E-11 1.8E-15 121.9 18.5 235 405-681 164-409 (411)
99 PF10230 DUF2305: Uncharacteri 99.3 4.2E-10 9E-15 113.5 22.2 104 427-530 2-123 (266)
100 PF01738 DLH: Dienelactone hyd 99.3 9.5E-11 2.1E-15 115.4 17.2 176 426-681 13-217 (218)
101 COG3458 Acetyl esterase (deace 99.3 5.5E-11 1.2E-15 113.2 13.7 276 354-681 9-317 (321)
102 COG4757 Predicted alpha/beta h 99.2 5.5E-11 1.2E-15 110.5 11.1 251 411-678 11-280 (281)
103 PRK10162 acetyl esterase; Prov 99.2 2.3E-09 5E-14 111.7 24.9 101 427-530 81-196 (318)
104 COG2945 Predicted hydrolase of 99.2 5.5E-10 1.2E-14 101.4 16.5 169 427-679 28-205 (210)
105 PF02230 Abhydrolase_2: Phosph 99.2 4.4E-10 9.5E-15 110.4 16.7 176 425-681 12-215 (216)
106 PF12146 Hydrolase_4: Putative 99.2 1.5E-10 3.2E-15 92.8 9.4 75 415-489 1-79 (79)
107 PF08538 DUF1749: Protein of u 99.1 2.1E-09 4.6E-14 106.9 17.5 115 410-531 15-150 (303)
108 PF02273 Acyl_transf_2: Acyl t 99.1 1.4E-09 3E-14 102.3 15.1 214 409-663 5-239 (294)
109 COG0412 Dienelactone hydrolase 99.1 6.9E-09 1.5E-13 102.5 19.9 174 428-682 28-234 (236)
110 PF05728 UPF0227: Uncharacteri 99.1 8.9E-09 1.9E-13 97.2 19.5 87 430-530 2-92 (187)
111 COG0400 Predicted esterase [Ge 99.1 2E-09 4.4E-14 102.8 15.2 169 427-680 18-204 (207)
112 PF12740 Chlorophyllase2: Chlo 99.0 5.2E-09 1.1E-13 102.3 15.5 104 426-529 16-131 (259)
113 KOG2624 Triglyceride lipase-ch 99.0 1.7E-08 3.6E-13 105.7 18.4 275 408-682 51-399 (403)
114 PRK10115 protease 2; Provision 99.0 4.6E-08 9.9E-13 111.8 23.3 122 409-530 420-560 (686)
115 PF06821 Ser_hydrolase: Serine 99.0 5.2E-09 1.1E-13 97.7 12.6 87 430-528 1-90 (171)
116 PF02129 Peptidase_S15: X-Pro 99.0 6.7E-08 1.5E-12 98.5 21.7 118 414-532 1-139 (272)
117 PF07224 Chlorophyllase: Chlor 99.0 1E-08 2.2E-13 97.7 13.1 101 427-530 46-158 (307)
118 PRK10252 entF enterobactin syn 99.0 1.4E-08 3E-13 126.9 18.4 100 426-528 1067-1170(1296)
119 PRK05371 x-prolyl-dipeptidyl a 98.9 3.7E-08 8.1E-13 113.2 20.2 226 445-682 270-520 (767)
120 COG3243 PhaC Poly(3-hydroxyalk 98.9 6.3E-09 1.4E-13 106.2 12.1 256 427-684 107-402 (445)
121 PF03441 FAD_binding_7: FAD bi 98.9 3.6E-10 7.8E-15 114.4 3.1 59 292-361 1-59 (277)
122 COG3571 Predicted hydrolase of 98.9 1E-07 2.3E-12 83.6 17.4 179 427-681 14-211 (213)
123 COG3319 Thioesterase domains o 98.8 1.7E-07 3.7E-12 92.4 17.7 100 428-530 1-104 (257)
124 PF09752 DUF2048: Uncharacteri 98.8 8.6E-08 1.9E-12 97.0 15.8 239 426-679 91-347 (348)
125 PF07819 PGAP1: PGAP1-like pro 98.8 4.8E-08 1E-12 95.8 12.4 102 426-530 3-124 (225)
126 KOG3975 Uncharacterized conser 98.8 3.4E-07 7.3E-12 86.5 16.7 246 426-679 28-301 (301)
127 PF03959 FSH1: Serine hydrolas 98.7 1E-07 2.2E-12 93.1 12.8 164 426-667 3-207 (212)
128 PF07859 Abhydrolase_3: alpha/ 98.7 1.2E-07 2.5E-12 92.9 13.0 98 430-530 1-111 (211)
129 PTZ00472 serine carboxypeptida 98.7 3.7E-06 8.1E-11 91.6 24.6 124 408-531 49-218 (462)
130 PF06028 DUF915: Alpha/beta hy 98.7 8E-07 1.7E-11 88.1 17.0 105 427-531 11-145 (255)
131 KOG3043 Predicted hydrolase re 98.7 5.2E-07 1.1E-11 84.4 13.7 188 411-681 23-240 (242)
132 PF10503 Esterase_phd: Esteras 98.6 2.2E-06 4.8E-11 82.9 18.3 103 427-529 16-132 (220)
133 PF06057 VirJ: Bacterial virul 98.6 4.3E-07 9.3E-12 84.0 12.2 95 429-528 4-106 (192)
134 PLN02733 phosphatidylcholine-s 98.6 2.6E-07 5.6E-12 98.9 11.4 96 437-533 104-205 (440)
135 COG3545 Predicted esterase of 98.6 2.6E-06 5.7E-11 77.0 15.6 172 428-680 3-178 (181)
136 KOG4627 Kynurenine formamidase 98.6 5.6E-07 1.2E-11 82.5 11.0 198 420-678 58-268 (270)
137 PF03403 PAF-AH_p_II: Platelet 98.5 1.6E-07 3.4E-12 99.4 7.6 102 426-528 99-261 (379)
138 KOG1515 Arylacetamide deacetyl 98.5 1E-05 2.2E-10 83.3 19.5 102 427-531 90-209 (336)
139 PF08840 BAAT_C: BAAT / Acyl-C 98.5 7.3E-07 1.6E-11 86.9 9.7 51 481-532 6-59 (213)
140 PRK04940 hypothetical protein; 98.4 2E-05 4.4E-10 72.9 18.0 85 430-530 2-93 (180)
141 PF01674 Lipase_2: Lipase (cla 98.4 2.3E-07 5E-12 89.5 5.2 87 428-515 2-96 (219)
142 KOG2551 Phospholipase/carboxyh 98.4 5.7E-06 1.2E-10 77.6 13.6 174 426-682 4-221 (230)
143 smart00824 PKS_TE Thioesterase 98.4 5E-06 1.1E-10 80.8 14.1 94 432-528 2-101 (212)
144 KOG2100 Dipeptidyl aminopeptid 98.4 1.3E-05 2.7E-10 92.3 19.3 226 401-683 493-749 (755)
145 PF12715 Abhydrolase_7: Abhydr 98.4 3.3E-05 7.1E-10 79.3 19.8 101 427-528 115-259 (390)
146 PF11339 DUF3141: Protein of u 98.4 4.4E-05 9.5E-10 80.4 20.9 79 446-530 93-176 (581)
147 PF00151 Lipase: Lipase; Inte 98.4 4.2E-07 9.2E-12 94.1 6.2 106 426-531 70-189 (331)
148 KOG1553 Predicted alpha/beta h 98.4 3.1E-06 6.8E-11 83.5 10.8 123 403-528 212-344 (517)
149 COG0657 Aes Esterase/lipase [L 98.3 4.1E-05 8.9E-10 79.8 19.3 102 427-531 79-193 (312)
150 PF03583 LIP: Secretory lipase 98.3 1E-05 2.3E-10 82.7 13.3 68 619-689 217-289 (290)
151 COG4188 Predicted dienelactone 98.3 9.4E-07 2E-11 89.8 5.0 91 427-517 71-182 (365)
152 PF00450 Peptidase_S10: Serine 98.2 0.00018 3.9E-09 78.3 21.8 125 407-531 12-183 (415)
153 KOG2281 Dipeptidyl aminopeptid 98.2 5.6E-05 1.2E-09 80.8 16.1 202 427-680 642-866 (867)
154 PF05990 DUF900: Alpha/beta hy 98.2 9.7E-06 2.1E-10 80.0 10.1 103 426-528 17-136 (233)
155 KOG3847 Phospholipase A2 (plat 98.1 1.5E-05 3.3E-10 78.0 10.6 102 426-528 117-274 (399)
156 KOG2112 Lysophospholipase [Lip 98.1 5.5E-05 1.2E-09 70.7 12.2 101 428-528 4-127 (206)
157 PF05677 DUF818: Chlamydia CHL 98.1 9.5E-05 2.1E-09 74.2 14.6 103 410-515 116-236 (365)
158 PLN02606 palmitoyl-protein thi 98.0 0.00031 6.7E-09 70.3 17.8 101 427-530 26-133 (306)
159 COG1075 LipA Predicted acetylt 98.0 1.5E-05 3.3E-10 83.2 8.3 102 427-530 59-165 (336)
160 COG3509 LpqC Poly(3-hydroxybut 98.0 6E-05 1.3E-09 74.0 11.3 125 405-529 34-179 (312)
161 PF04301 DUF452: Protein of un 97.9 0.00033 7.1E-09 67.0 14.8 82 427-532 11-93 (213)
162 COG4099 Predicted peptidase [G 97.9 7.5E-05 1.6E-09 72.8 10.0 114 414-528 170-303 (387)
163 PF05705 DUF829: Eukaryotic pr 97.9 0.002 4.3E-08 64.3 20.8 219 429-678 1-240 (240)
164 PF05057 DUF676: Putative seri 97.9 3.6E-05 7.8E-10 75.3 7.9 86 427-513 4-97 (217)
165 PRK10439 enterobactin/ferric e 97.9 0.00067 1.4E-08 72.9 17.9 102 427-528 209-322 (411)
166 KOG4840 Predicted hydrolases o 97.8 0.00042 9.2E-09 64.7 13.6 101 427-530 36-145 (299)
167 KOG1551 Uncharacterized conser 97.8 0.00032 6.9E-09 67.2 12.5 231 427-683 113-368 (371)
168 COG2936 Predicted acyl esteras 97.8 0.00014 3E-09 78.8 11.4 118 413-530 27-160 (563)
169 KOG3253 Predicted alpha/beta h 97.8 0.00017 3.8E-09 76.7 11.3 159 427-665 176-349 (784)
170 PLN02633 palmitoyl protein thi 97.6 0.0057 1.2E-07 61.4 17.8 101 427-530 25-132 (314)
171 PF00756 Esterase: Putative es 97.5 0.00043 9.2E-09 69.6 10.1 103 427-529 24-150 (251)
172 PLN03016 sinapoylglucose-malat 97.5 0.012 2.7E-07 63.5 21.5 122 408-529 39-210 (433)
173 COG4782 Uncharacterized protei 97.5 0.00054 1.2E-08 69.4 10.0 104 426-529 115-234 (377)
174 PF05577 Peptidase_S28: Serine 97.5 0.00088 1.9E-08 73.2 12.3 104 427-530 29-149 (434)
175 COG4814 Uncharacterized protei 97.5 0.00071 1.5E-08 64.9 9.6 103 428-530 46-177 (288)
176 COG3046 Uncharacterized protei 97.4 0.0055 1.2E-07 62.6 15.9 119 45-173 2-126 (505)
177 KOG3101 Esterase D [General fu 97.4 0.00033 7.1E-09 64.9 6.4 105 427-531 44-178 (283)
178 PF10142 PhoPQ_related: PhoPQ- 97.4 0.0035 7.5E-08 65.4 14.5 157 492-688 170-327 (367)
179 COG1073 Hydrolases of the alph 97.3 0.0015 3.3E-08 67.0 11.4 66 616-681 226-297 (299)
180 PLN02209 serine carboxypeptida 97.3 0.022 4.7E-07 61.6 20.1 122 409-530 42-213 (437)
181 KOG3724 Negative regulator of 97.3 0.0016 3.4E-08 71.8 11.0 100 427-529 89-220 (973)
182 KOG2541 Palmitoyl protein thio 97.2 0.0086 1.9E-07 58.1 13.7 98 428-528 24-127 (296)
183 PF12048 DUF3530: Protein of u 97.1 0.012 2.5E-07 60.9 14.9 102 427-528 87-228 (310)
184 COG3150 Predicted esterase [Ge 97.1 0.003 6.5E-08 56.7 8.9 89 430-530 2-92 (191)
185 PF02450 LCAT: Lecithin:choles 97.1 0.0025 5.4E-08 68.2 9.5 83 442-532 66-163 (389)
186 cd00312 Esterase_lipase Estera 96.9 0.0027 5.9E-08 70.8 8.8 103 426-530 94-214 (493)
187 PLN02213 sinapoylglucose-malat 96.9 0.051 1.1E-06 56.6 17.4 76 455-530 2-97 (319)
188 PF10340 DUF2424: Protein of u 96.8 0.014 3E-07 60.7 12.3 104 427-532 122-238 (374)
189 KOG1282 Serine carboxypeptidas 96.8 0.082 1.8E-06 56.9 17.9 124 407-531 45-215 (454)
190 COG1770 PtrB Protease II [Amin 96.7 0.051 1.1E-06 59.6 16.2 106 426-531 447-564 (682)
191 PF02089 Palm_thioest: Palmito 96.7 0.0024 5.2E-08 63.5 5.6 103 427-530 5-117 (279)
192 KOG2183 Prolylcarboxypeptidase 96.6 0.0094 2E-07 61.3 9.2 102 427-528 80-201 (492)
193 PF06441 EHN: Epoxide hydrolas 96.6 0.015 3.2E-07 49.8 9.1 71 371-447 38-112 (112)
194 PF07082 DUF1350: Protein of u 96.5 0.17 3.6E-06 49.4 16.4 91 429-528 19-124 (250)
195 PF08386 Abhydrolase_4: TAP-li 96.3 0.015 3.3E-07 49.3 7.2 61 621-682 34-95 (103)
196 COG2272 PnbA Carboxylesterase 96.2 0.0083 1.8E-07 63.7 6.2 103 427-530 94-218 (491)
197 COG1505 Serine proteases of th 96.1 0.094 2E-06 56.9 13.3 118 410-528 399-534 (648)
198 COG0627 Predicted esterase [Ge 96.0 0.018 3.8E-07 59.3 7.4 106 427-532 54-190 (316)
199 cd00741 Lipase Lipase. Lipase 95.9 0.019 4E-07 52.8 6.6 50 480-529 10-67 (153)
200 KOG2369 Lecithin:cholesterol a 95.9 0.0074 1.6E-07 63.5 4.2 89 441-530 124-226 (473)
201 PF00135 COesterase: Carboxyle 95.9 0.025 5.3E-07 63.8 8.6 103 427-529 125-245 (535)
202 PLN02517 phosphatidylcholine-s 95.8 0.016 3.5E-07 63.1 6.2 88 442-531 157-265 (642)
203 KOG3967 Uncharacterized conser 95.8 0.073 1.6E-06 49.8 9.6 102 427-528 101-226 (297)
204 KOG2237 Predicted serine prote 95.7 0.036 7.7E-07 60.3 8.3 103 427-529 470-584 (712)
205 PF11144 DUF2920: Protein of u 95.6 0.096 2.1E-06 54.8 10.8 36 494-529 184-219 (403)
206 COG3946 VirJ Type IV secretory 95.6 0.036 7.8E-07 57.1 7.4 86 427-517 260-349 (456)
207 COG4553 DepA Poly-beta-hydroxy 95.5 2.2 4.8E-05 42.3 18.9 102 427-530 103-210 (415)
208 PF01764 Lipase_3: Lipase (cla 95.4 0.039 8.4E-07 49.7 6.3 37 479-515 49-85 (140)
209 PF11187 DUF2974: Protein of u 95.1 0.052 1.1E-06 53.1 6.7 51 479-530 70-124 (224)
210 KOG2182 Hydrolytic enzymes of 95.1 0.11 2.4E-06 55.2 9.3 107 425-531 84-209 (514)
211 PF05576 Peptidase_S37: PS-10 94.6 0.038 8.2E-07 57.3 4.4 112 417-530 53-170 (448)
212 COG2819 Predicted hydrolase of 94.0 0.093 2E-06 51.7 5.5 48 481-528 121-171 (264)
213 COG4947 Uncharacterized protei 93.7 0.12 2.5E-06 46.8 4.9 112 415-528 14-135 (227)
214 KOG1202 Animal-type fatty acid 93.6 3.5 7.6E-05 48.6 17.3 96 425-530 2121-2220(2376)
215 cd00519 Lipase_3 Lipase (class 93.3 0.17 3.7E-06 50.0 6.1 24 492-515 126-149 (229)
216 COG2830 Uncharacterized protei 93.3 1.7 3.7E-05 39.0 11.3 82 427-532 11-93 (214)
217 PF06259 Abhydrolase_8: Alpha/ 93.2 0.24 5.2E-06 46.3 6.5 55 477-531 87-146 (177)
218 KOG2521 Uncharacterized conser 93.2 2.3 5E-05 44.1 14.2 235 427-685 38-294 (350)
219 PF04244 DPRP: Deoxyribodipyri 93.0 0.92 2E-05 44.3 10.4 121 48-178 1-131 (224)
220 PLN02162 triacylglycerol lipas 92.6 0.29 6.3E-06 52.2 6.8 52 477-528 261-320 (475)
221 COG2382 Fes Enterochelin ester 92.4 0.39 8.5E-06 48.1 7.1 37 494-530 177-213 (299)
222 PLN00413 triacylglycerol lipas 92.3 0.36 7.8E-06 51.7 7.0 51 478-528 268-326 (479)
223 PLN02454 triacylglycerol lipas 91.1 0.35 7.5E-06 51.2 5.5 34 481-514 213-248 (414)
224 KOG4372 Predicted alpha/beta h 91.1 0.29 6.2E-06 51.0 4.7 85 427-512 80-168 (405)
225 PLN02571 triacylglycerol lipas 91.0 0.33 7.2E-06 51.3 5.1 37 478-514 208-246 (413)
226 COG2939 Carboxypeptidase C (ca 90.3 0.92 2E-05 48.8 7.7 102 427-528 101-235 (498)
227 PF01083 Cutinase: Cutinase; 90.1 0.69 1.5E-05 43.6 6.0 74 455-530 40-123 (179)
228 PF11288 DUF3089: Protein of u 89.8 0.66 1.4E-05 44.3 5.7 68 447-515 39-116 (207)
229 PLN02408 phospholipase A1 89.5 0.53 1.1E-05 49.1 5.1 36 480-515 184-221 (365)
230 PLN02934 triacylglycerol lipas 88.2 0.71 1.5E-05 49.9 5.1 37 477-513 304-340 (515)
231 PLN02310 triacylglycerol lipas 88.0 1.2 2.6E-05 47.1 6.6 37 478-514 189-229 (405)
232 PLN02324 triacylglycerol lipas 87.7 0.81 1.7E-05 48.4 5.1 35 480-514 199-235 (415)
233 PRK12652 putative monovalent c 87.3 4.1 8.8E-05 42.8 10.0 102 60-161 19-144 (357)
234 PF07519 Tannase: Tannase and 87.1 3.8 8.2E-05 45.1 10.1 82 447-530 53-151 (474)
235 PLN02802 triacylglycerol lipas 86.5 0.96 2.1E-05 48.9 4.9 36 479-514 313-350 (509)
236 PF05277 DUF726: Protein of un 86.4 1.6 3.5E-05 45.4 6.4 38 492-529 218-260 (345)
237 KOG1516 Carboxylesterase and r 86.1 1.8 3.9E-05 48.9 7.3 103 427-529 112-232 (545)
238 PLN02753 triacylglycerol lipas 85.3 1.2 2.6E-05 48.4 4.9 36 479-514 292-332 (531)
239 PF04083 Abhydro_lipase: Parti 85.0 1.6 3.5E-05 33.0 4.1 35 409-443 16-59 (63)
240 PLN03037 lipase class 3 family 84.7 1.3 2.9E-05 47.9 5.0 36 479-514 299-338 (525)
241 PLN02761 lipase class 3 family 84.4 1.4 3E-05 47.8 5.0 36 479-514 273-314 (527)
242 PLN02719 triacylglycerol lipas 84.1 1.4 3.1E-05 47.6 4.9 35 480-514 279-318 (518)
243 TIGR00591 phr2 photolyase PhrI 84.1 0.43 9.3E-06 52.5 1.0 57 240-304 221-277 (454)
244 COG0415 PhrB Deoxyribodipyrimi 84.0 0.37 8.1E-06 51.7 0.5 57 242-321 197-253 (461)
245 TIGR00289 conserved hypothetic 81.2 9.3 0.0002 37.2 8.9 91 61-156 15-110 (222)
246 PLN02847 triacylglycerol lipas 81.0 2.5 5.4E-05 46.6 5.3 24 491-514 248-271 (633)
247 cd01989 STK_N The N-terminal d 79.4 26 0.00056 31.2 10.9 83 58-140 11-112 (146)
248 KOG4569 Predicted lipase [Lipi 79.1 2.8 6E-05 43.9 4.8 37 478-514 155-191 (336)
249 PRK09982 universal stress prot 78.7 18 0.0004 32.3 9.6 81 60-140 17-112 (142)
250 PRK15456 universal stress prot 78.0 12 0.00025 33.5 8.1 81 60-140 18-114 (142)
251 TIGR00290 MJ0570_dom MJ0570-re 76.9 23 0.00051 34.5 10.1 90 60-156 14-110 (223)
252 TIGR03712 acc_sec_asp2 accesso 75.4 1.3E+02 0.0028 32.8 15.8 109 413-528 273-389 (511)
253 COG4287 PqaA PhoPQ-activated p 74.6 18 0.0004 37.3 8.8 160 488-683 228-389 (507)
254 cd01987 USP_OKCHK USP domain i 72.9 33 0.00071 29.5 9.4 79 59-142 12-96 (124)
255 PF06850 PHB_depo_C: PHB de-po 72.9 6.5 0.00014 37.0 4.9 59 621-680 134-201 (202)
256 PF09949 DUF2183: Uncharacteri 72.7 23 0.0005 29.6 7.7 85 440-524 10-97 (100)
257 cd01994 Alpha_ANH_like_IV This 72.5 22 0.00047 34.0 8.6 91 61-156 14-113 (194)
258 PRK15005 universal stress prot 71.0 42 0.0009 29.8 9.9 80 61-140 19-116 (144)
259 TIGR02765 crypto_DASH cryptoch 70.5 2.2 4.7E-05 46.5 1.5 57 241-303 207-263 (429)
260 PF08237 PE-PPE: PE-PPE domain 67.6 22 0.00048 34.8 7.7 75 454-528 2-88 (225)
261 cd00293 USP_Like Usp: Universa 66.0 61 0.0013 27.4 9.8 71 70-140 28-102 (130)
262 PF08259 Periviscerokin: Periv 65.7 2.6 5.5E-05 19.6 0.3 7 2-8 4-10 (11)
263 TIGR03556 photolyase_8HDF deox 64.7 3.5 7.5E-05 45.5 1.6 55 242-304 205-259 (471)
264 KOG2029 Uncharacterized conser 64.4 11 0.00023 41.6 5.0 48 481-528 510-571 (697)
265 TIGR02766 crypt_chrom_pln cryp 64.4 3.8 8.2E-05 45.3 1.8 56 241-304 199-254 (475)
266 PF03441 FAD_binding_7: FAD bi 62.5 2.1 4.6E-05 43.5 -0.5 57 243-322 1-57 (277)
267 PRK10116 universal stress prot 62.2 1.1E+02 0.0024 26.9 12.9 84 58-141 15-112 (142)
268 COG5153 CVT17 Putative lipase 61.5 16 0.00034 36.3 5.2 32 485-516 267-298 (425)
269 KOG4540 Putative lipase essent 61.5 16 0.00034 36.3 5.2 32 485-516 267-298 (425)
270 PF01902 ATP_bind_4: ATP-bindi 60.8 12 0.00027 36.3 4.5 88 61-155 15-109 (218)
271 cd01988 Na_H_Antiporter_C The 60.7 96 0.0021 26.6 10.1 83 60-142 13-105 (132)
272 PRK10674 deoxyribodipyrimidine 60.6 4.5 9.8E-05 44.6 1.6 55 242-304 202-256 (472)
273 KOG4388 Hormone-sensitive lipa 58.4 33 0.00072 37.7 7.3 96 427-530 396-509 (880)
274 cd01714 ETF_beta The electron 55.9 45 0.00097 32.0 7.4 73 446-526 68-146 (202)
275 COG2102 Predicted ATPases of P 55.7 70 0.0015 30.9 8.3 93 60-157 14-112 (223)
276 KOG1283 Serine carboxypeptidas 55.4 28 0.00062 35.3 5.9 102 427-528 31-165 (414)
277 PF06792 UPF0261: Uncharacteri 53.3 2E+02 0.0043 30.8 12.0 98 428-526 2-127 (403)
278 PF00702 Hydrolase: haloacid d 49.1 74 0.0016 30.3 8.0 61 96-157 130-192 (215)
279 PRK15118 universal stress glob 48.5 1.5E+02 0.0031 26.2 9.3 40 101-140 70-112 (144)
280 PRK10490 sensor protein KdpD; 48.4 1.1E+02 0.0024 36.9 10.7 70 70-144 279-349 (895)
281 PF00582 Usp: Universal stress 47.6 1E+02 0.0022 26.3 8.1 32 110-141 81-112 (140)
282 KOG2385 Uncharacterized conser 44.2 48 0.001 36.0 5.8 41 490-530 443-488 (633)
283 TIGR03679 arCOG00187 arCOG0018 43.4 2.1E+02 0.0045 27.8 10.0 92 61-161 12-113 (218)
284 COG0589 UspA Universal stress 41.6 1.7E+02 0.0037 25.6 8.8 46 95-140 73-122 (154)
285 PF03283 PAE: Pectinacetyleste 41.4 79 0.0017 33.5 7.1 47 482-528 142-194 (361)
286 PRK12467 peptide synthase; Pro 41.2 85 0.0018 44.8 9.3 97 427-526 3692-3792(3956)
287 COG0560 SerB Phosphoserine pho 38.7 40 0.00086 32.7 4.1 45 96-140 80-124 (212)
288 COG1139 Uncharacterized conser 36.9 1E+02 0.0022 33.0 6.7 62 96-161 65-128 (459)
289 COG4822 CbiK Cobalamin biosynt 36.4 1.6E+02 0.0036 28.2 7.3 60 427-499 138-199 (265)
290 smart00827 PKS_AT Acyl transfe 36.1 39 0.00084 34.5 3.8 30 484-513 72-101 (298)
291 TIGR01490 HAD-SF-IB-hyp1 HAD-s 35.6 81 0.0018 29.9 5.8 45 94-138 88-132 (202)
292 cd07225 Pat_PNPLA6_PNPLA7 Pata 35.3 46 0.001 34.3 4.1 33 483-515 32-64 (306)
293 PF10087 DUF2325: Uncharacteri 34.8 1.7E+02 0.0036 24.1 6.7 66 98-171 12-82 (97)
294 KOG1615 Phosphoserine phosphat 34.7 53 0.0011 31.0 3.9 42 97-138 92-135 (227)
295 PRK02399 hypothetical protein; 34.4 6.1E+02 0.013 27.2 12.6 96 431-526 6-129 (406)
296 COG2205 KdpD Osmosensitive K+ 34.3 3.8E+02 0.0082 31.5 11.1 93 59-156 260-360 (890)
297 PF00698 Acyl_transf_1: Acyl t 34.1 27 0.00058 36.3 2.3 30 484-513 74-103 (318)
298 COG2217 ZntA Cation transport 33.7 1.1E+02 0.0025 35.4 7.3 68 98-175 542-609 (713)
299 TIGR03131 malonate_mdcH malona 33.6 46 0.00099 34.1 3.9 30 484-513 66-95 (295)
300 PRK01122 potassium-transportin 33.4 1.6E+02 0.0034 34.2 8.4 72 96-177 448-519 (679)
301 PF03610 EIIA-man: PTS system 33.3 2.6E+02 0.0056 23.8 8.0 73 429-513 2-76 (116)
302 PRK10279 hypothetical protein; 33.1 51 0.0011 33.9 4.0 33 484-516 23-55 (300)
303 cd07198 Patatin Patatin-like p 32.6 59 0.0013 30.1 4.1 33 484-516 16-48 (172)
304 PF08765 Mor: Mor transcriptio 32.6 1.7E+02 0.0037 24.8 6.5 68 90-157 3-71 (108)
305 TIGR01544 HAD-SF-IE haloacid d 32.3 73 0.0016 32.2 4.8 36 97-132 125-160 (277)
306 PRK14010 potassium-transportin 31.9 1.9E+02 0.0042 33.4 8.7 72 96-177 444-515 (673)
307 TIGR01088 aroQ 3-dehydroquinat 31.3 3.9E+02 0.0084 23.9 8.6 73 97-176 25-103 (141)
308 TIGR01488 HAD-SF-IB Haloacid D 31.0 53 0.0012 30.3 3.5 43 96-138 76-118 (177)
309 PRK11175 universal stress prot 30.2 2.2E+02 0.0048 28.9 8.4 42 99-140 226-270 (305)
310 cd07207 Pat_ExoU_VipD_like Exo 29.9 67 0.0014 30.3 4.1 29 487-515 20-48 (194)
311 TIGR00128 fabD malonyl CoA-acy 29.8 54 0.0012 33.3 3.6 30 485-514 73-103 (290)
312 PF13167 GTP-bdg_N: GTP-bindin 29.7 3.3E+02 0.007 22.6 8.2 59 95-156 7-79 (95)
313 PF09994 DUF2235: Uncharacteri 29.6 2.6E+02 0.0056 28.3 8.5 87 428-514 2-112 (277)
314 cd07227 Pat_Fungal_NTE1 Fungal 29.5 68 0.0015 32.4 4.1 32 484-515 28-59 (269)
315 PRK14719 bifunctional RNAse/5- 29.4 1.2E+02 0.0026 32.1 6.1 58 104-161 37-96 (360)
316 PF00448 SRP54: SRP54-type pro 28.7 2.6E+02 0.0057 26.6 7.9 77 441-525 70-148 (196)
317 KOG2872 Uroporphyrinogen decar 28.4 1.5E+02 0.0034 29.7 6.1 69 427-502 252-336 (359)
318 cd07210 Pat_hypo_W_succinogene 27.6 84 0.0018 30.6 4.3 28 488-515 22-49 (221)
319 COG1752 RssA Predicted esteras 27.3 70 0.0015 33.0 4.0 33 484-516 29-61 (306)
320 TIGR01491 HAD-SF-IB-PSPlk HAD- 27.2 1E+02 0.0022 29.1 4.9 43 96-138 83-125 (201)
321 PRK12822 phospho-2-dehydro-3-d 26.4 7.7E+02 0.017 25.9 11.1 73 412-491 213-289 (356)
322 TIGR01525 ATPase-IB_hvy heavy 26.4 2.7E+02 0.0059 31.4 8.8 46 94-139 385-431 (556)
323 PRK13015 3-dehydroquinate dehy 26.1 4.9E+02 0.011 23.5 9.1 64 106-176 40-105 (146)
324 TIGR01512 ATPase-IB2_Cd heavy 24.9 2.2E+02 0.0047 32.1 7.6 47 94-140 363-410 (536)
325 PRK11175 universal stress prot 24.8 5.2E+02 0.011 26.1 10.0 88 54-141 11-117 (305)
326 PF12710 HAD: haloacid dehalog 24.7 1.5E+02 0.0032 27.6 5.4 41 100-140 96-138 (192)
327 TIGR01497 kdpB K+-transporting 24.4 3.7E+02 0.0081 31.1 9.3 44 96-139 449-492 (675)
328 COG0529 CysC Adenylylsulfate k 24.1 4.2E+02 0.009 25.0 7.7 60 426-487 21-84 (197)
329 TIGR02764 spore_ybaN_pdaB poly 23.8 65 0.0014 30.4 2.8 33 429-461 153-188 (191)
330 PRK09484 3-deoxy-D-manno-octul 23.7 2E+02 0.0043 26.9 6.0 55 97-161 56-110 (183)
331 PRK11613 folP dihydropteroate 23.7 3.9E+02 0.0085 27.2 8.3 59 442-507 164-224 (282)
332 cd06279 PBP1_LacI_like_3 Ligan 23.5 4.3E+02 0.0093 26.3 9.0 70 93-172 18-87 (283)
333 PF06309 Torsin: Torsin; Inte 23.4 1.1E+02 0.0024 26.8 3.7 30 425-454 50-81 (127)
334 cd01427 HAD_like Haloacid deha 23.2 2.2E+02 0.0048 24.1 6.0 49 93-141 24-76 (139)
335 TIGR00521 coaBC_dfp phosphopan 23.2 4.8E+02 0.01 27.9 9.3 96 428-528 113-234 (390)
336 PF13911 AhpC-TSA_2: AhpC/TSA 22.8 1.6E+02 0.0034 25.0 4.8 41 98-140 2-45 (115)
337 PF11713 Peptidase_C80: Peptid 22.8 61 0.0013 29.7 2.2 45 462-506 61-116 (157)
338 cd07228 Pat_NTE_like_bacteria 22.6 1.1E+02 0.0023 28.5 3.9 29 488-516 22-50 (175)
339 COG1412 Uncharacterized protei 22.6 5.2E+02 0.011 23.0 7.8 46 116-175 83-128 (136)
340 TIGR02873 spore_ylxY probable 22.4 96 0.0021 31.3 3.7 33 429-461 232-264 (268)
341 cd07209 Pat_hypo_Ecoli_Z1214_l 22.1 1.1E+02 0.0024 29.6 4.0 32 485-516 17-48 (215)
342 cd06294 PBP1_ycjW_transcriptio 22.0 4E+02 0.0086 26.1 8.3 69 93-171 18-90 (270)
343 KOG0133 Deoxyribodipyrimidine 21.9 11 0.00023 41.5 -3.4 97 46-142 99-199 (531)
344 COG2939 Carboxypeptidase C (ca 21.8 1E+02 0.0022 33.7 3.8 61 621-681 425-491 (498)
345 cd07211 Pat_PNPLA8 Patatin-lik 21.6 2E+02 0.0044 29.5 6.1 51 453-513 6-60 (308)
346 PRK12756 phospho-2-dehydro-3-d 21.1 9.7E+02 0.021 25.1 11.5 32 87-118 28-59 (348)
347 PRK05579 bifunctional phosphop 21.1 4.4E+02 0.0095 28.4 8.6 73 427-501 116-196 (399)
348 COG1073 Hydrolases of the alph 21.0 9.1 0.0002 38.6 -4.1 89 426-516 48-154 (299)
349 TIGR02884 spore_pdaA delta-lac 21.0 1.1E+02 0.0023 30.0 3.6 34 428-461 187-221 (224)
350 cd00384 ALAD_PBGS Porphobilino 21.0 5.5E+02 0.012 26.3 8.5 64 56-119 2-74 (314)
351 KOG1252 Cystathionine beta-syn 20.9 2.8E+02 0.0061 28.8 6.5 51 413-464 191-249 (362)
352 TIGR02816 pfaB_fam PfaB family 20.8 98 0.0021 34.6 3.7 32 484-515 254-286 (538)
353 cd04823 ALAD_PBGS_aspartate_ri 20.7 6.1E+02 0.013 26.1 8.8 67 52-118 1-76 (320)
354 TIGR00338 serB phosphoserine p 20.6 1.2E+02 0.0026 29.1 4.0 42 96-137 88-129 (219)
355 COG1448 TyrB Aspartate/tyrosin 20.3 5.3E+02 0.011 27.3 8.4 86 428-528 172-264 (396)
356 PRK10517 magnesium-transportin 20.1 4.4E+02 0.0094 31.9 9.1 38 96-133 553-590 (902)
No 1
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=100.00 E-value=6.8e-42 Score=369.97 Aligned_cols=251 Identities=31% Similarity=0.534 Sum_probs=198.3
Q ss_pred cEEEEEcCCCCCcCCHHHHHHHhC-CCeEEEEEECCccccc--------CChhHHHHHHHHHHHHHHHHHhcCCcEEEEE
Q 005554 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--------YSNEMLELVIFALEDLRKSLKEQGSDLMIRF 116 (691)
Q Consensus 46 ~~l~W~r~dlRl~DN~aL~~A~~~-~~~~~~f~~~~~~~~~--------~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~ 116 (691)
.+|||||||||++||+||.+|++. .+|+||||+||+++.. .+++|++||++||.+|+++|+++|++|+++.
T Consensus 2 ~~l~WfRrDLRl~DN~aL~~A~~~~~~vl~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~ 81 (429)
T TIGR02765 2 VVLYWFRNDLRVHDNPALYKASSSSDTLIPLYCFDPRQFKLTHFFGFPKTGPARGKFLLESLKDLRTSLRKLGSDLLVRS 81 (429)
T ss_pred eEEEEeCCCCccccHHHHHHHHhcCCeEEEEEEECchHhccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 479999999999999999999987 6899999999988762 4899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcceeccCCC----CCCCcchhhHH
Q 005554 117 GRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR 192 (691)
Q Consensus 117 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~f~ 192 (691)
|++.++|++|+++++|++||+|.+|++++++||++|++.|.+.+| .++.+++++|++|+++ +++|++|++|+
T Consensus 82 G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i----~~~~~~~~~l~~p~~v~~~~~~~~~~ft~f~ 157 (429)
T TIGR02765 82 GKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGI----HVEQHWGSTLYHEDDLPFDLEDLPDVFTQFR 157 (429)
T ss_pred CCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCc----eEEEecCCEeECHHhcCCCCCCCCCCchHHH
Confidence 999999999999999999999999999999999999999998887 8899999999988864 78899999999
Q ss_pred hhccc---cCCCCCCCC-ccCCcCCCCCCCCCChhhhhhhhccCcchhchhhhhhcccchhhhhhHHhhhccccccccCC
Q 005554 193 KLQRP---LTSPILPPT-LAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLN 268 (691)
Q Consensus 193 ~~~~~---~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 268 (691)
+++.. ...+++.|. ++..+.......+|.+++++.
T Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~----------------------------------------- 196 (429)
T TIGR02765 158 KQVEAKCSIRPPLPAPEKLPPLPSVDDPGWIPTLEDLGE----------------------------------------- 196 (429)
T ss_pred HHHHhhCCCCCCCCCcccCCCCcccccccCCCChhhcCC-----------------------------------------
Confidence 98643 222333331 111110000001121111110
Q ss_pred CCCCcccccCCcceeccCCCeeecCchHHHHHHHHHHHhhcCCCCCchHHHHHHhhhhcCCCCCcccccccccccccccc
Q 005554 269 NQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIIS 348 (691)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~LSpyL~~g~~~ 348 (691)
+.. .......|+|||.+|+++|++|+. ...+..|++.||. .++.++||+||||||||+||
T Consensus 197 ---------~~~--~~~~~~~~~gGe~~A~~~L~~Fl~---~~~l~~Y~~~R~~------~~~~~~tS~LSpyL~~G~iS 256 (429)
T TIGR02765 197 ---------ESS--EVDRGLPFVGGETAGLARLKEYFW---SKDLKSYKETRNG------MLGPDYSTKFSPWLALGCVS 256 (429)
T ss_pred ---------Ccc--cccccCCcCchHHHHHHHHHHHHh---hccHhhhhhccCc------ccCCCCcCccCHHHhCCccc
Confidence 000 000011479999999999999983 3568899998753 24567899999999999999
Q ss_pred hhHHHHHHHHHhh
Q 005554 349 RRGVHYEAIKFEK 361 (691)
Q Consensus 349 ~~~~~~~~~~~~~ 361 (691)
+|+|++++.+++.
T Consensus 257 ~r~v~~~~~~~~~ 269 (429)
T TIGR02765 257 PRQIYEELQRYET 269 (429)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999977653
No 2
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-41 Score=353.48 Aligned_cols=246 Identities=26% Similarity=0.405 Sum_probs=204.3
Q ss_pred CcEEEEEcCCCCCcCCHHHHHHHhC-CC-eEEEEEECCcccccCChhHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHH
Q 005554 45 GSAVIWFKQDLRVDDHLGLVAASKY-QA-VVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENV 122 (691)
Q Consensus 45 ~~~l~W~r~dlRl~DN~aL~~A~~~-~~-~~~~f~~~~~~~~~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g~~~~~ 122 (691)
+++|||||||||++||+||.+|++. .+ +++|||++|+++...++++.+|+.+||++|+++|+++|++|++..|++.++
T Consensus 2 ~~~l~WfrrDLR~~DN~aL~~A~~~~~~~~~~vfi~~~~~~~~~~~~~~~Fl~~sL~~L~~~L~~~gi~L~v~~~~~~~~ 81 (461)
T COG0415 2 STVLVWFRRDLRLTDNAALAAACQSGQPVIIAVFILDPEQLGHASPRHAAFLLQSLQALQQSLAELGIPLLVREGDPEQV 81 (461)
T ss_pred CeEEEEeccccccCChHHHHHHHhcCCCceEEEEEechhhccccCHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCHHHH
Confidence 5789999999999999999999988 45 569999999998877999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcceeccCC----CCCCCcchhhHHhhcccc
Q 005554 123 IRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRKLQRPL 198 (691)
Q Consensus 123 l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~f~~~~~~~ 198 (691)
+++++++.++++|++|.+|+..++.||.+|+..|.+.|| .++++++++++.|.. .+++|++||+|+|+|...
T Consensus 82 l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi----~~~~~~d~~l~~p~~~~t~~~~~y~vfT~F~k~~~~~ 157 (461)
T COG0415 82 LPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGI----AVHSFWDALLHEPGEVRTGSGEPYKVFTPFYKAWRDR 157 (461)
T ss_pred HHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCc----eEEEeccccccCHhhccCCCCCCccccchHHHHHHHh
Confidence 999999999999999999999999999999999999998 888899999999974 499999999999986544
Q ss_pred ---CCCCCCCC-ccCCcCCCCCCCCCChhhhhhhhccCcchhchhhhhhcccchhhhhhHHhhhccccccccCCCCCCcc
Q 005554 199 ---TSPILPPT-LAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPR 274 (691)
Q Consensus 199 ---~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (691)
..|.+.|. +..... . ...+....+ | +|.
T Consensus 158 ~~~~~~~~~p~~~~~~~~-~--~~~~~~~~~-------P-----~~~--------------------------------- 189 (461)
T COG0415 158 LRILRPVPAPDVLDALRD-E--EPPPEEISL-------P-----DFS--------------------------------- 189 (461)
T ss_pred cccCCCCCCcchhccccc-c--ccCcccccC-------C-----ccc---------------------------------
Confidence 34444442 111110 0 000000000 0 000
Q ss_pred cccCCcceeccCCCeeecCchHHHHHHHHHHHhhcCCCCCchHHHHHHhhhhcCCCCCcccccccccccccccchhHHHH
Q 005554 275 KRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHY 354 (691)
Q Consensus 275 ~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~LSpyL~~g~~~~~~~~~ 354 (691)
......+.|||++|+++|++|++ +++..|.++|| .|+.++||+|||||+||+||+|+||.
T Consensus 190 ---------~~~~~~~~~Ge~aA~~~l~~F~~----~~l~~Y~~~Rd-------~p~~~~TS~LSpyL~~G~IS~r~v~~ 249 (461)
T COG0415 190 ---------KFDVLLFTGGEKAALARLQDFLA----EGLDDYERTRD-------FPALDGTSRLSPYLAFGVISPREVYA 249 (461)
T ss_pred ---------cccccCCCchHHHHHHHHHHHHH----HHHHHHHHhcC-------CcccccccccCHHHHcCCcCHHHHHH
Confidence 00112689999999999999994 67999999886 68999999999999999999999999
Q ss_pred HHHHHhhh
Q 005554 355 EAIKFEKE 362 (691)
Q Consensus 355 ~~~~~~~~ 362 (691)
++.+....
T Consensus 250 ~~~~~~~~ 257 (461)
T COG0415 250 ALLAAESD 257 (461)
T ss_pred HHHHhhhc
Confidence 99887754
No 3
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=100.00 E-value=5.8e-41 Score=363.66 Aligned_cols=246 Identities=25% Similarity=0.359 Sum_probs=197.6
Q ss_pred cEEEEEcCCCCCcCCHHHHHHHhC-CCeEEEEEECCccccc--CChhHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHH
Q 005554 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENV 122 (691)
Q Consensus 46 ~~l~W~r~dlRl~DN~aL~~A~~~-~~~~~~f~~~~~~~~~--~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g~~~~~ 122 (691)
.+|||||||||++||+||.+|++. .+|+||||+||.++.. .+++|++||++||.+|+++|+++|++|+++.|++.++
T Consensus 2 ~vl~WfRrDLRl~DN~AL~~A~~~~~~vl~vfi~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~p~~v 81 (471)
T TIGR03556 2 LILFWHRRDLRLSDNIGLAAARQQSAKVVGLFCLDPNILQADDMAPARVAYLIGCLQELQQRYQQAGSQLLILQGDPVQL 81 (471)
T ss_pred CEEEEeCCCCCcchHHHHHHHHhcCCCEEEEEEEchhhhccccCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEECCHHHH
Confidence 489999999999999999999987 6899999999988753 3788999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcceeccCCC----CCCCcchhhHHhhcccc
Q 005554 123 IRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPL 198 (691)
Q Consensus 123 l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~f~~~~~~~ 198 (691)
|++|+++++|++||+|.+|++++++||++|++.|.+.+| .+..+++++|++|+.+ +++|++|++|++++...
T Consensus 82 l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i----~~~~~~~~~l~~p~~i~~~~~~~y~~ft~f~k~~~~~ 157 (471)
T TIGR03556 82 IPQLAQQLGAKAVYWNLDVEPYGRKRDRAVAAALKEAGI----AVVTLWDQLLHSPDEILTGSGNPYTVYTPFWKNWSSL 157 (471)
T ss_pred HHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHCCC----EEEEeCCcEEECccccccCCCCCCcchhHHHHHHHhc
Confidence 999999999999999999999999999999999998887 8999999999999864 77899999999986543
Q ss_pred C--CCCCCCC-ccCCcCCCC-------CCCCCChhhhhhhhccCcchhchhhhhhcccchhhhhhHHhhhccccccccCC
Q 005554 199 T--SPILPPT-LAGAKLEAD-------WGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLN 268 (691)
Q Consensus 199 ~--~p~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 268 (691)
. .|++.|. +...+.... ...+|.+++++
T Consensus 158 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------------------------------------ 195 (471)
T TIGR03556 158 PKPTPVATPTELEGLTEAELEAAAPLGVIALPTAKDLG------------------------------------------ 195 (471)
T ss_pred cccCCCCCccccccCCccccccccccccccCCcccccc------------------------------------------
Confidence 2 2344432 211100000 00001000000
Q ss_pred CCCCcccccCCcceeccCCCeeecCchHHHHHHHHHHHhhcCCCCCchHHHHHHhhhhcCCCCCcccccccccccccccc
Q 005554 269 NQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIIS 348 (691)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~LSpyL~~g~~~ 348 (691)
.+. ... ..|.|||.+|+++|+.|++ +++..|..+|| .|+.++||+|||||+||+||
T Consensus 196 --------~~~---~~~--~~~~gGe~~A~~~L~~f~~----~~l~~Y~~~r~-------~p~~~~tS~LSpyL~~G~iS 251 (471)
T TIGR03556 196 --------FDW---DGD--LILEPGETAAQARLEEFCD----RAIADYQEQRN-------FPALDGTSQLSPALKFGVIG 251 (471)
T ss_pred --------ccc---ccc--cCCCCcHHHHHHHHHHHHH----HHHHHhhhccC-------CCCCCCCCCCChhhcCCccc
Confidence 000 000 1479999999999999984 57999999875 46778999999999999999
Q ss_pred hhHHHHHHHHHhh
Q 005554 349 RRGVHYEAIKFEK 361 (691)
Q Consensus 349 ~~~~~~~~~~~~~ 361 (691)
+|+|++++.+..+
T Consensus 252 ~r~v~~~~~~~~~ 264 (471)
T TIGR03556 252 IRTVWQATQEAHE 264 (471)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999976543
No 4
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=100.00 E-value=4.4e-39 Score=351.57 Aligned_cols=243 Identities=18% Similarity=0.209 Sum_probs=190.1
Q ss_pred EEEEcCCCCCcCCHHHHHHHhCCCeEEEEEECCccccc--CChhHHHHHHHHHHHHHHHHHhcCCcEEEEE-CChHHHHH
Q 005554 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRF-GRVENVIR 124 (691)
Q Consensus 48 l~W~r~dlRl~DN~aL~~A~~~~~~~~~f~~~~~~~~~--~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~-g~~~~~l~ 124 (691)
|+|||||||++||+||.+|++.++|+||||+||.+++. .+.++.+||++||.+|+++|+++|++|+++. |+++++|+
T Consensus 1 l~WFRrDLRl~DN~aL~~A~~~~~vlpvyi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~ 80 (475)
T TIGR02766 1 IVWFRRDLRVEDNPALAAAARAGPVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSLRSLGTCLVTIRSTDTVAALL 80 (475)
T ss_pred CEecCCCCCcchHHHHHHHHhCCCEEEEEEechHHhccccccHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCCHHHHHH
Confidence 69999999999999999998766899999999988753 3667788999999999999999999999985 89999999
Q ss_pred HHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcceeccCCC----CCCCcchhhHHhhccccCC
Q 005554 125 ELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPLTS 200 (691)
Q Consensus 125 ~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~f~~~~~~~~~ 200 (691)
+|+++++|++||+|.+|++++++||++|++.|.+.|| .++.+++++|++|+++ +++|++|++|++++.....
T Consensus 81 ~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~~~gi----~~~~~~~~~l~~p~~i~~~~~~~~~~ft~f~~~~~~~~~ 156 (475)
T TIGR02766 81 DCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGI----SVQSFNADLLYEPWEVYDELGRPFTMFAAFWERCLSMPY 156 (475)
T ss_pred HHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCC----EEEEecCCEEEChhhhcccCCCCCCeecHHHHHHHhccC
Confidence 9999999999999999999999999999999998888 8999999999999854 6789999999998644321
Q ss_pred -C---CCCCC-ccCCcCCCCCCCCCChhhhhhhhccCcchhchhhhhhcccchhhhhhHHhhhccccccccCCCCCCccc
Q 005554 201 -P---ILPPT-LAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRK 275 (691)
Q Consensus 201 -p---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (691)
+ .+.|. ++. .....+..++++.. . ...+.
T Consensus 157 ~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~--~-----~~~~~---------------------------------- 190 (475)
T TIGR02766 157 DPESPLLPPKKIIS-----GDVSKCSADDLGFE--D-----DSEKG---------------------------------- 190 (475)
T ss_pred CCCCCCCCccccCC-----CccccCChhhcCCC--C-----ccccc----------------------------------
Confidence 1 22221 100 00000111111100 0 00000
Q ss_pred ccCCcceeccCCCeeecCchHHHHHHHHHHHhhcCCCCCchHHHHHHhhhhcCCCCCcccccccccccccccchhHHHHH
Q 005554 276 RLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYE 355 (691)
Q Consensus 276 ~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~LSpyL~~g~~~~~~~~~~ 355 (691)
.. ......|.|||.+|+++|+.|++ +++..|+.+|| .|+.++||+|||||+|||||+|+|+++
T Consensus 191 --~~----~~~~~~~~gGe~~A~~~L~~Fl~----~~~~~Y~~~Rd-------~p~~~~tS~LSPyL~~G~ISpR~v~~~ 253 (475)
T TIGR02766 191 --SN----ALLARAWSPGWSNADKALTEFIN----GPLLEYSKNRK-------KADSATTSLLSPYLHFGEVSVRKVFHL 253 (475)
T ss_pred --cc----ccccccCCCccHHHHHHHHHHHH----HHHHHHhhcCC-------CCCCCCCCCCCcccccCcccHHHHHHH
Confidence 00 00012489999999999999984 56889998875 456789999999999999999999999
Q ss_pred HH
Q 005554 356 AI 357 (691)
Q Consensus 356 ~~ 357 (691)
+.
T Consensus 254 ~~ 255 (475)
T TIGR02766 254 VR 255 (475)
T ss_pred HH
Confidence 85
No 5
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=100.00 E-value=7.5e-39 Score=347.28 Aligned_cols=241 Identities=15% Similarity=0.195 Sum_probs=189.2
Q ss_pred EEEEEcCCCCCcCCHHHHHHHhC-C-CeEEEEEECCccccc--CChhHHHHHHHHHHHHHHHHHhcCCcEEEEEC----C
Q 005554 47 AVIWFKQDLRVDDHLGLVAASKY-Q-AVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRFG----R 118 (691)
Q Consensus 47 ~l~W~r~dlRl~DN~aL~~A~~~-~-~~~~~f~~~~~~~~~--~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g----~ 118 (691)
+|||||||||++||+||.+|++. + +|+||||+||.++.. .+.+|++||+|||.+|+++|+++|++|+|+.| +
T Consensus 4 ~l~WfRrDLRl~DN~aL~~A~~~~~~~vlpvyv~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~g~ 83 (472)
T PRK10674 4 HLVWFRNDLRLHDNLALAAACRDPSARVLALFIATPAQWAAHDMAPRQAAFINAQLNALQIALAEKGIPLLFHEVDDFAA 83 (472)
T ss_pred eEEEECCCCCcchHHHHHHHHhCCCCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCcCC
Confidence 69999999999999999999977 3 799999999987643 48999999999999999999999999999975 7
Q ss_pred hHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcceeccCC----CCCCCcchhhHHhh
Q 005554 119 VENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN----LNDLPVSHNEFRKL 194 (691)
Q Consensus 119 ~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~f~~~ 194 (691)
+.++|++|+++++|++||+|++|++++++||++|++.|. +| .+..+++++|++++. .+++|++|++|+++
T Consensus 84 ~~~vl~~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~--~i----~~~~~~~~~l~~~~~i~~~~~~~y~~ft~f~~~ 157 (472)
T PRK10674 84 SVEWLKQFCQQHQVTHLFYNYQYEVNERQRDAAVERALR--NV----VCQGFDDSVLLPPGSVMTGNHEMYKVFTPFKNA 157 (472)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHcC--CC----EEEEecCceEeCccccccCCCCCCCcccHHHHH
Confidence 999999999999999999999999999999999999996 45 777899999999985 37889999999998
Q ss_pred ccc-cCCCCCCCCccCCcCCCCCCCC--CChhhhhhhhccCcchhchhhhhhcccchhhhhhHHhhhccccccccCCCCC
Q 005554 195 QRP-LTSPILPPTLAGAKLEADWGPL--PTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQH 271 (691)
Q Consensus 195 ~~~-~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 271 (691)
+.+ +..+.+.+ .+. +........ +.+..++ +.
T Consensus 158 ~~~~~~~~~p~~-~~~-p~~~~~~~~~~~~~~~~~-------------~~------------------------------ 192 (472)
T PRK10674 158 FLKRLREGDPEC-VPA-PKVRSSGAIEPLPPIPFN-------------YP------------------------------ 192 (472)
T ss_pred HHHhhcccCCcc-CCC-CccccccccCCCCccccc-------------Cc------------------------------
Confidence 654 33222211 100 000000000 0000000 00
Q ss_pred CcccccCCcceeccCCCeeecCchHHHHHHHHHHHhhcCCCCCchHHHHHHhhhhcCCCCCcccccccccccccccchhH
Q 005554 272 SPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRG 351 (691)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~LSpyL~~g~~~~~~ 351 (691)
.. .. ....|.|||.+|+++|++|++ +++..|.+.|| .|+.++||+|||||+||+||+|+
T Consensus 193 -----~~---~~--~~~~~~gGe~~A~~~L~~f~~----~~l~~Y~~~r~-------~p~~~~tS~LSPyL~~G~iS~r~ 251 (472)
T PRK10674 193 -----QQ---SF--DTALFPVGEKAAIAQLRQFCQ----QGAGEYEQQRD-------FPAVDGTSRLSAYLATGVLSPRQ 251 (472)
T ss_pred -----cc---cc--ccCCCCCCHHHHHHHHHHHHH----HHHHHhccccC-------CCCccCCCCcChhhccCcCCHHH
Confidence 00 00 011479999999999999984 56899999875 45678999999999999999999
Q ss_pred HHHHHHHH
Q 005554 352 VHYEAIKF 359 (691)
Q Consensus 352 ~~~~~~~~ 359 (691)
|++++.+.
T Consensus 252 v~~~~~~~ 259 (472)
T PRK10674 252 CLHRLLAE 259 (472)
T ss_pred HHHHHHHH
Confidence 99999763
No 6
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-38 Score=346.06 Aligned_cols=250 Identities=16% Similarity=0.175 Sum_probs=189.2
Q ss_pred CCCCCcEEEEEcCCCCCcCCHHHHHHHh-----CCCeEEEEEECCcccccCChhHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 005554 41 KGRSGSAVIWFKQDLRVDDHLGLVAASK-----YQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIR 115 (691)
Q Consensus 41 ~~~~~~~l~W~r~dlRl~DN~aL~~A~~-----~~~~~~~f~~~~~~~~~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~ 115 (691)
..++.++|||||+|||++||+||.+|++ ..+|+||||+||.++. .+.+|++||++||.+|+++|+++|++|+++
T Consensus 19 ~~~~~~vL~WFRrDLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~-~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~ 97 (454)
T TIGR00591 19 LRSSGVVVYWMSRDQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLA-ATRRHYFFMLGGLDEVANECERLIIPFHLL 97 (454)
T ss_pred CCCCCeEEEEecCchhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCccc-ccHHHHHHHHHHHHHHHHHHHHcCCceEEe
Confidence 3444679999999999999999999975 2489999999999875 488999999999999999999999999999
Q ss_pred ECChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcceeccCCC--CCCCcchhhHHh
Q 005554 116 FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL--NDLPVSHNEFRK 193 (691)
Q Consensus 116 ~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~f~~ 193 (691)
.|++.++|++|+++++|++||+|+++++++++||+.|++.|.+ +| .++.+++++|++++.+ ..++++|++|.+
T Consensus 98 ~g~~~~~l~~l~~~~~i~~V~~~~~~~~~~~~rd~~v~~~l~~-~i----~~~~~~~~~l~p~~~~~~~~~y~~ft~~~k 172 (454)
T TIGR00591 98 DGPPKELLPYFVDLHAAAAVVTDFSPLRQPEQWDEAVGKLLPK-DV----PFQQVDAHNVVPCWAASKKLEYAARTIRGK 172 (454)
T ss_pred ecChHHHHHHHHHHcCCCEEEEecccCcHHHHHHHHHHHHhcC-CC----cEEEECCceEeeCcccCCceeeeeecHHHH
Confidence 9999999999999999999999999999999999999999965 66 8999999999999653 456777887776
Q ss_pred hccccCCCCCC-CCc--cCCcCCCCCCCCCChhhhhhhhccCcchhchhhhhhcccchhhhhhHHhhhccccccccCCCC
Q 005554 194 LQRPLTSPILP-PTL--AGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQ 270 (691)
Q Consensus 194 ~~~~~~~p~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 270 (691)
.....+..++. +.. .+.+.... +.+. .|... ...+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------------~~~~~-----~~~~------------------ 210 (454)
T TIGR00591 173 IRKLLPEYLTEFPRVLKHPSPLDLE--AGPV-----------------DWDAV-----RDSL------------------ 210 (454)
T ss_pred HHHhChhhccccCCCccCCcccccc--cCcC-----------------CHHHH-----HHhc------------------
Confidence 52222111111 100 00000000 0000 00000 0000
Q ss_pred CCcccccCCcceeccCCCee-ecCchHHHHHHHHHHHhhcCCCCCchHHHHHHhhhhcCCCCCcccccccccccccccch
Q 005554 271 HSPRKRLDKSFFVTDKGNTV-GGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISR 349 (691)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~-~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~LSpyL~~g~~~~ 349 (691)
..+.. .....| +|||.+|+++|+.|+. +++..|+++|| .|+.++||+||||||||+||+
T Consensus 211 -----~~~~~----~~~~~~~~gGe~aA~~~L~~F~~----~~l~~Y~~~Rn-------~p~~~~tS~LSPyL~~G~IS~ 270 (454)
T TIGR00591 211 -----AVERS----VEEVVWAKPGTTAGLIMLESFIE----KRLCFFRTRRN-------DPNNDALSMLSPWLHFGQLSA 270 (454)
T ss_pred -----cCcCC----cCCcCCCCCcHHHHHHHHHHHHH----HHHHHHHHhcC-------CcccccccccchHHhcCcccH
Confidence 00000 001136 9999999999999983 68999999986 467799999999999999999
Q ss_pred hHHHHHHHH
Q 005554 350 RGVHYEAIK 358 (691)
Q Consensus 350 ~~~~~~~~~ 358 (691)
|+|++++.+
T Consensus 271 R~i~~~~~~ 279 (454)
T TIGR00591 271 QRAARAVER 279 (454)
T ss_pred HHHHHHHHH
Confidence 999999754
No 7
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=1.8e-31 Score=276.26 Aligned_cols=276 Identities=35% Similarity=0.532 Sum_probs=189.4
Q ss_pred CCceEEEEEEEcCeEEEEEEeCCCCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC-------cCC
Q 005554 403 EGVYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-------IVY 475 (691)
Q Consensus 403 ~~~~~~~~~~~~g~~i~y~~~g~~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-------~~~ 475 (691)
+..++.++++++|.+++|...|+++++|||+||+++++..|..+++.|.+. |+|+++|+||||.|+.+. ..+
T Consensus 5 ~~~~~~~~~~~~~~~i~y~~~G~~~~~vlllHG~~~~~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~~~~ 83 (294)
T PLN02824 5 EPQVETRTWRWKGYNIRYQRAGTSGPALVLVHGFGGNADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNSFY 83 (294)
T ss_pred CCCCCCceEEEcCeEEEEEEcCCCCCeEEEECCCCCChhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccccccC
Confidence 344557799999999999999866799999999999999999999999986 899999999999998753 358
Q ss_pred CHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhH
Q 005554 476 TELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQ 555 (691)
Q Consensus 476 s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
+++++++++.+++++++.++++|+||||||.+++.+|.++|++|+++|++++........................+...
T Consensus 84 ~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (294)
T PLN02824 84 TFETWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRET 163 (294)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhch
Confidence 99999999999999999999999999999999999999999999999999986422110000000000000000000000
Q ss_pred -HHHHHH-----HhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEe
Q 005554 556 -LLLFYL-----RLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQG 629 (691)
Q Consensus 556 -~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G 629 (691)
....+. .......+...+... ..........+...............+............+.++++|+|+|+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G 242 (294)
T PLN02824 164 AVGKAFFKSVATPETVKNILCQCYHDD-SAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWG 242 (294)
T ss_pred hHHHHHHHhhcCHHHHHHHHHHhccCh-hhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEe
Confidence 000000 011112222222211 1222333333333222222222222222222122233567899999999999
Q ss_pred CCCCCCChhHHHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhh
Q 005554 630 IKDPISDSKSKVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 630 ~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
++|.+++.+. .+.+.+..++++++++ ++||++++|+|+++++.|.+|++++
T Consensus 243 ~~D~~~~~~~-~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 243 EKDPWEPVEL-GRAYANFDAVEDFIVLPGVGHCPQDEAPELVNPLIESFVARH 294 (294)
T ss_pred cCCCCCChHH-HHHHHhcCCccceEEeCCCCCChhhhCHHHHHHHHHHHHhcC
Confidence 9999999974 4557788888888888 8999999999999999999999863
No 8
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=100.00 E-value=6e-33 Score=259.89 Aligned_cols=155 Identities=26% Similarity=0.399 Sum_probs=128.2
Q ss_pred EEEEEcCCCCCcCCHHHHHHHhC-CCeEEEEEECCccccc--CChhHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHH
Q 005554 47 AVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVI 123 (691)
Q Consensus 47 ~l~W~r~dlRl~DN~aL~~A~~~-~~~~~~f~~~~~~~~~--~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g~~~~~l 123 (691)
+|||||+|||++||+||++|++. .+|+||||+||..... .|++|++||++||.+|+++|+++|++|+++.|++.++|
T Consensus 1 ~l~Wfr~DLRl~DN~aL~~A~~~~~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l 80 (165)
T PF00875_consen 1 VLVWFRRDLRLHDNPALHAAAQNGDPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRKLGIPLLVLRGDPEEVL 80 (165)
T ss_dssp EEEEESS--SSTT-HHHHHHHHTTSEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHHTTS-EEEEESSHHHHH
T ss_pred CEEEEcCCCchhhhHHHHHHHHcCCCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHhcCcceEEEecchHHHH
Confidence 69999999999999999999988 7999999999995443 39999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcceeccCCC----CCCCcchhhHHhhcccc-
Q 005554 124 RELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQRPL- 198 (691)
Q Consensus 124 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~f~~~~~~~- 198 (691)
++|+++++|++||+|++|++++++||++|++.|.+.|| .++.+++++|++++.+ +++|++|++|+|++.+.
T Consensus 81 ~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i----~~~~~~~~~L~~~~~i~~~~~~~~~vFtpf~k~~~~~~ 156 (165)
T PF00875_consen 81 PELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGI----KVHTFDDHTLVPPDDIPKKDGEPYKVFTPFRKKWEKQL 156 (165)
T ss_dssp HHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTS----EEEEE--SSSS-HHHCHSTTSSSHSSHHHHHHHHHCHC
T ss_pred HHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcce----EEEEECCcEEEeccccccCCCCCcccHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998887 9999999999999854 89999999999997653
Q ss_pred C-CCCCCC
Q 005554 199 T-SPILPP 205 (691)
Q Consensus 199 ~-~p~~~~ 205 (691)
. .|+|+|
T Consensus 157 ~~~p~p~p 164 (165)
T PF00875_consen 157 LEEPLPAP 164 (165)
T ss_dssp SC------
T ss_pred CCCCCCCC
Confidence 2 456554
No 9
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.97 E-value=5.5e-30 Score=265.33 Aligned_cols=273 Identities=18% Similarity=0.160 Sum_probs=184.1
Q ss_pred CceEEEEEEEcCeEEEEEEeCCCCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHH
Q 005554 404 GVYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSEL 483 (691)
Q Consensus 404 ~~~~~~~~~~~g~~i~y~~~g~~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~d 483 (691)
.+.+.++++.+|.+++|...| ++++|||+||++++...|..+++.|.+. |+||++|+||||.|+.+...++++++++|
T Consensus 5 ~~~~~~~~~~~g~~i~y~~~G-~g~~vvllHG~~~~~~~w~~~~~~L~~~-~~via~D~~G~G~S~~~~~~~~~~~~a~d 82 (295)
T PRK03592 5 PPGEMRRVEVLGSRMAYIETG-EGDPIVFLHGNPTSSYLWRNIIPHLAGL-GRCLAPDLIGMGASDKPDIDYTFADHARY 82 (295)
T ss_pred CCCcceEEEECCEEEEEEEeC-CCCEEEEECCCCCCHHHHHHHHHHHhhC-CEEEEEcCCCCCCCCCCCCCCCHHHHHHH
Confidence 345567888999999999998 6789999999999999999999999987 69999999999999988778999999999
Q ss_pred HHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHH-HHHHHH
Q 005554 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQL-LLFYLR 562 (691)
Q Consensus 484 l~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 562 (691)
+.+++++++.++++++||||||.+++.+|.++|++|+++|++++..... .+....... ......+.... ......
T Consensus 83 l~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 158 (295)
T PRK03592 83 LDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPM-TWDDFPPAV---RELFQALRSPGEGEEMVL 158 (295)
T ss_pred HHHHHHHhCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCc-chhhcchhH---HHHHHHHhCccccccccc
Confidence 9999999999999999999999999999999999999999999843221 100000000 00000000000 000000
Q ss_pred hhHHHHHHhhcCCC-CccccHHHHHHHHHhcCCcchHHHHHHHhcc-c----------cCcchHhhhcCCCCcEEEEEeC
Q 005554 563 LNISNFVKQCYPTR-RERADDWLISEMLRASYDPGVLVVLESIFSF-K----------LSLPLNYLLEGFKEKVLIIQGI 630 (691)
Q Consensus 563 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~l~~i~~PvLiI~G~ 630 (691)
....+....+... ...........+......+............ . ...+....+..+++|+|+|+|+
T Consensus 159 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 237 (295)
T PRK03592 159 -EENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAE 237 (295)
T ss_pred -chhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEecc
Confidence 0001111111100 0011111111221111111111111000000 0 0011234567899999999999
Q ss_pred CCCCCChhHHHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhhhC
Q 005554 631 KDPISDSKSKVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTIES 683 (691)
Q Consensus 631 ~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~~ 683 (691)
+|.++++....+.+.+..++++++++ ++||++++|+|+++++.|.+|+++...
T Consensus 238 ~D~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 238 PGAILTTGAIRDWCRSWPNQLEITVFGAGLHFAQEDSPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred CCcccCcHHHHHHHHHhhhhcceeeccCcchhhhhcCHHHHHHHHHHHHHHhcc
Confidence 99999665566767777788999887 899999999999999999999997654
No 10
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.97 E-value=5.8e-30 Score=251.48 Aligned_cols=277 Identities=22% Similarity=0.270 Sum_probs=190.7
Q ss_pred CceEEEEEEEcCeEEEEEEeCCC-CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC--cCCCHHHH
Q 005554 404 GVYSTRIWRWNGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMW 480 (691)
Q Consensus 404 ~~~~~~~~~~~g~~i~y~~~g~~-~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~--~~~s~~~~ 480 (691)
..++.++++.+|.+++|.+.|++ +|.|+++||++.++..|+.++..|+.+||+|+++|+||+|.|+.|. ..|++..+
T Consensus 20 ~~~~hk~~~~~gI~~h~~e~g~~~gP~illlHGfPe~wyswr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~~~l 99 (322)
T KOG4178|consen 20 SAISHKFVTYKGIRLHYVEGGPGDGPIVLLLHGFPESWYSWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTIDEL 99 (322)
T ss_pred hhcceeeEEEccEEEEEEeecCCCCCEEEEEccCCccchhhhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeHHHH
Confidence 45678899999999999999865 8999999999999999999999999999999999999999999876 58999999
Q ss_pred HHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhh-hhhhhcCChhh-------h
Q 005554 481 SELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQF-SNERQASGPIR-------L 552 (691)
Q Consensus 481 a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~ 552 (691)
+.|+..++++++.++++++||+||+++|..+|..+|++|+++|+++.+.. .+....... .......+... .
T Consensus 100 ~~di~~lld~Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~-~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~ 178 (322)
T KOG4178|consen 100 VGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP-NPKLKPLDSSKAIFGKSYYICLFQEPGKP 178 (322)
T ss_pred HHHHHHHHHHhccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC-CcccchhhhhccccCccceeEeccccCcc
Confidence 99999999999999999999999999999999999999999999998755 111100000 00000000000 0
Q ss_pred hhHHHHHHHHhhHHHHHHhhcC------CCCccccHHHHH----HHHHhcCCcchHHHHHHHhccccCc-chHhhhcCCC
Q 005554 553 GAQLLLFYLRLNISNFVKQCYP------TRRERADDWLIS----EMLRASYDPGVLVVLESIFSFKLSL-PLNYLLEGFK 621 (691)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~i~ 621 (691)
...+.....+.....+.....+ ..+.....|..+ .+.......++...++...++.... .....+.+++
T Consensus 179 E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~ 258 (322)
T KOG4178|consen 179 ETELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKIT 258 (322)
T ss_pred hhhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccc
Confidence 0000001111111111111111 000111122222 2222222222222122111111111 1233567899
Q ss_pred CcEEEEEeCCCCCCChhHHHHHHHHhCCCc-EEEEe-CCCCCCCccChHHHHHHHHHHHHhh
Q 005554 622 EKVLIIQGIKDPISDSKSKVAMFKEHCAGI-VIREL-DAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 622 ~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~-~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
+||++|+|+.|.+.+.....+.+++..++. +.+++ ++||+++.|+|++++++|.+|+++.
T Consensus 259 iPv~fi~G~~D~v~~~p~~~~~~rk~vp~l~~~vv~~~~gH~vqqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 259 IPVLFIWGDLDPVLPYPIFGELYRKDVPRLTERVVIEGIGHFVQQEKPQEVNQAILGFINSF 320 (322)
T ss_pred cceEEEEecCcccccchhHHHHHHHhhccccceEEecCCcccccccCHHHHHHHHHHHHHhh
Confidence 999999999999999887778888888887 34444 9999999999999999999999874
No 11
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.97 E-value=4.6e-29 Score=264.50 Aligned_cols=272 Identities=32% Similarity=0.530 Sum_probs=182.8
Q ss_pred EEEEEcCe-EEEEEEeCCC-----CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC-cCCCHHHHH
Q 005554 409 RIWRWNGY-QIQYTVAGKE-----GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWS 481 (691)
Q Consensus 409 ~~~~~~g~-~i~y~~~g~~-----~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-~~~s~~~~a 481 (691)
+++.++|. +++|.+.|++ +|+|||+||++++...|.+++..|.+ +|+|+++|+||||.|+.+. ..+++++++
T Consensus 64 ~~~~~~g~~~i~Y~~~G~g~~~~~gp~lvllHG~~~~~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~~~~~~~~~a 142 (360)
T PLN02679 64 KKWKWKGEYSINYLVKGSPEVTSSGPPVLLVHGFGASIPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPPGFSYTMETWA 142 (360)
T ss_pred ceEEECCceeEEEEEecCcccCCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCCCccccHHHHH
Confidence 46777887 9999998853 48999999999999999999999987 6999999999999998764 478999999
Q ss_pred HHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHh-CccccceEEEecCCCCCCCchhhhhhhhhhhcCCh---hhh-----
Q 005554 482 ELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACL-WPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGP---IRL----- 552 (691)
Q Consensus 482 ~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~-~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~---~~~----- 552 (691)
+++.+++++++.++++|+||||||.+++.++.. +|++|+++|++++.+.................... ..+
T Consensus 143 ~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (360)
T PLN02679 143 ELILDFLEEVVQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRG 222 (360)
T ss_pred HHHHHHHHHhcCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchh
Confidence 999999999999999999999999999998874 79999999999986432111000000000000000 000
Q ss_pred -hhHHHHHH-HHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeC
Q 005554 553 -GAQLLLFY-LRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGI 630 (691)
Q Consensus 553 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~ 630 (691)
........ .......++...+. ......+...+.+............+..........+....+.++++|||+|+|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~ 301 (360)
T PLN02679 223 IASALFNRVKQRDNLKNILLSVYG-NKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGD 301 (360)
T ss_pred hHHHHHHHhcCHHHHHHHHHHhcc-CcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeC
Confidence 00000000 01112222222222 1122233333333222222222232222222212223445678999999999999
Q ss_pred CCCCCChhH----HHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhhh
Q 005554 631 KDPISDSKS----KVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 631 ~D~~vp~~~----~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~ 682 (691)
+|.++|++. ..+.+.+.+++++++++ ++||++++|+|+++++.|.+||++..
T Consensus 302 ~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~~~ 358 (360)
T PLN02679 302 QDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQLP 358 (360)
T ss_pred CCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHhcC
Confidence 999999863 12335556789998888 89999999999999999999998743
No 12
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.97 E-value=2.4e-29 Score=257.83 Aligned_cols=267 Identities=21% Similarity=0.175 Sum_probs=181.2
Q ss_pred eEEEEEEEcCeEEEEEEeC-C-CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHH
Q 005554 406 YSTRIWRWNGYQIQYTVAG-K-EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSEL 483 (691)
Q Consensus 406 ~~~~~~~~~g~~i~y~~~g-~-~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~d 483 (691)
+..+++.++|.+++|...+ . .+++|||+||++++...|..+++.|.+ +|+|+++|+||||.|+.+...+++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~plvllHG~~~~~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~ 80 (276)
T TIGR02240 2 FIFRTIDLDGQSIRTAVRPGKEGLTPLLIFNGIGANLELVFPFIEALDP-DLEVIAFDVPGVGGSSTPRHPYRFPGLAKL 80 (276)
T ss_pred eeEEEeccCCcEEEEEEecCCCCCCcEEEEeCCCcchHHHHHHHHHhcc-CceEEEECCCCCCCCCCCCCcCcHHHHHHH
Confidence 3457888999999998753 3 358999999999999999999999987 499999999999999877777899999999
Q ss_pred HHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHh
Q 005554 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRL 563 (691)
Q Consensus 484 l~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (691)
+.+++++++.++++|+||||||.+++.+|.++|++|+++|+++++........ ............ ..... .
T Consensus 81 ~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~-------~ 151 (276)
T TIGR02240 81 AARMLDYLDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPG-KPKVLMMMASPR-RYIQP-------S 151 (276)
T ss_pred HHHHHHHhCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCC-chhHHHHhcCch-hhhcc-------c
Confidence 99999999999999999999999999999999999999999998754211000 000000000000 00000 0
Q ss_pred hHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHH
Q 005554 564 NISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAM 643 (691)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~ 643 (691)
........++.... ............................. ...+....+.++++|+|+|+|++|.+++++. .+.
T Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~-~~~ 228 (276)
T TIGR02240 152 HGIHIAPDIYGGAF-RRDPELAMAHASKVRSGGKLGYYWQLFAG-LGWTSIHWLHKIQQPTLVLAGDDDPIIPLIN-MRL 228 (276)
T ss_pred cccchhhhhcccee-eccchhhhhhhhhcccCCCchHHHHHHHH-cCCchhhHhhcCCCCEEEEEeCCCCcCCHHH-HHH
Confidence 00000001111000 00001111111111111100001111111 1112234578999999999999999999984 566
Q ss_pred HHHhCCCcEEEEeCCCCCCCccChHHHHHHHHHHHHhhhCCC
Q 005554 644 FKEHCAGIVIRELDAGHCPHDEKPEEVNSIISEWIVTIESKV 685 (691)
Q Consensus 644 ~~~~~~~~~~~~~~~GH~~~~e~pe~v~~~I~~fL~~~~~~~ 685 (691)
+.+..++++++++++||++++|+|+++++.|.+|+++..++.
T Consensus 229 l~~~~~~~~~~~i~~gH~~~~e~p~~~~~~i~~fl~~~~~~~ 270 (276)
T TIGR02240 229 LAWRIPNAELHIIDDGHLFLITRAEAVAPIIMKFLAEERQRA 270 (276)
T ss_pred HHHhCCCCEEEEEcCCCchhhccHHHHHHHHHHHHHHhhhhc
Confidence 677789999988877999999999999999999999876643
No 13
>PLN02578 hydrolase
Probab=99.97 E-value=1.9e-28 Score=259.53 Aligned_cols=268 Identities=34% Similarity=0.576 Sum_probs=186.7
Q ss_pred EEEEEEcCeEEEEEEeCCCCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHH
Q 005554 408 TRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDF 487 (691)
Q Consensus 408 ~~~~~~~g~~i~y~~~g~~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~l 487 (691)
.+++.++|.+|+|...| ++|+|||+||++++...|..+++.|.+ +|+|+++|+||||.|+.+...++.+.+++++.++
T Consensus 68 ~~~~~~~~~~i~Y~~~g-~g~~vvliHG~~~~~~~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~~~~~~~~a~~l~~~ 145 (354)
T PLN02578 68 YNFWTWRGHKIHYVVQG-EGLPIVLIHGFGASAFHWRYNIPELAK-KYKVYALDLLGFGWSDKALIEYDAMVWRDQVADF 145 (354)
T ss_pred ceEEEECCEEEEEEEcC-CCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCcccccCHHHHHHHHHHH
Confidence 46888999999999988 678999999999999999999999987 5999999999999999887789999999999999
Q ss_pred HHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhh-hhh-------HHHHH
Q 005554 488 TVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIR-LGA-------QLLLF 559 (691)
Q Consensus 488 l~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~ 559 (691)
++.+..++++++||||||.+++.+|.++|++|+++|++++++...................... ... .....
T Consensus 146 i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (354)
T PLN02578 146 VKEVVKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLG 225 (354)
T ss_pred HHHhccCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998643221110000000000000000 000 00000
Q ss_pred H------HHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHH----HHhccccCcchHhhhcCCCCcEEEEEe
Q 005554 560 Y------LRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLE----SIFSFKLSLPLNYLLEGFKEKVLIIQG 629 (691)
Q Consensus 560 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~i~~PvLiI~G 629 (691)
. ............+. ......+...+........+....... .........+....+.++++|+++|+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G 304 (354)
T PLN02578 226 FLFWQAKQPSRIESVLKSVYK-DKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWG 304 (354)
T ss_pred HHHHHhcCHHHHHHHHHHhcC-CcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEe
Confidence 0 00011111111221 122233333333333323332222211 111112233455678899999999999
Q ss_pred CCCCCCChhHHHHHHHHhCCCcEEEEeCCCCCCCccChHHHHHHHHHHHH
Q 005554 630 IKDPISDSKSKVAMFKEHCAGIVIRELDAGHCPHDEKPEEVNSIISEWIV 679 (691)
Q Consensus 630 ~~D~~vp~~~~~~~~~~~~~~~~~~~~~~GH~~~~e~pe~v~~~I~~fL~ 679 (691)
++|.+++.+. .+.+.+..++.+++++++||+++.|+|+++++.|.+|++
T Consensus 305 ~~D~~v~~~~-~~~l~~~~p~a~l~~i~~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 305 DLDPWVGPAK-AEKIKAFYPDTTLVNLQAGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCCCCCHHH-HHHHHHhCCCCEEEEeCCCCCccccCHHHHHHHHHHHHh
Confidence 9999999884 566777889999888899999999999999999999986
No 14
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.96 E-value=3.2e-28 Score=252.88 Aligned_cols=266 Identities=21% Similarity=0.234 Sum_probs=177.6
Q ss_pred CCCCceEEEEEEEcC-----eEEEEEEeCC-CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC--
Q 005554 401 SNEGVYSTRIWRWNG-----YQIQYTVAGK-EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-- 472 (691)
Q Consensus 401 ~~~~~~~~~~~~~~g-----~~i~y~~~g~-~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-- 472 (691)
.+..++..++++.++ .+|+|...|+ ++|+|||+||++++...|..+++.|.+.||+|+++|+||||.|+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~i~y~~~G~~~~~~lvliHG~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~ 93 (302)
T PRK00870 14 LPDYPFAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHGEPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRR 93 (302)
T ss_pred CcCCCCCceeEeecCCCCceEEEEEEecCCCCCCEEEEECCCCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCc
Confidence 334556778899999 8999999886 37899999999999999999999998779999999999999998754
Q ss_pred cCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhh
Q 005554 473 IVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRL 552 (691)
Q Consensus 473 ~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (691)
..++++++++++.+++++++.++++++||||||.+++.+|.++|++|+++|++++................ .......
T Consensus 94 ~~~~~~~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~--~~~~~~~ 171 (302)
T PRK00870 94 EDYTYARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAW--RAFSQYS 171 (302)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhh--hcccccC
Confidence 35899999999999999999999999999999999999999999999999999874211110000000000 0000000
Q ss_pred hhHHHHHHHHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHH---HHhccc-------cCcchHhhhcCCCC
Q 005554 553 GAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLE---SIFSFK-------LSLPLNYLLEGFKE 622 (691)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~l~~i~~ 622 (691)
.. ......+..... ..........+.............. ...... ........+.++++
T Consensus 172 ~~--------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 240 (302)
T PRK00870 172 PV--------LPVGRLVNGGTV---RDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDK 240 (302)
T ss_pred ch--------hhHHHHhhcccc---ccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCC
Confidence 00 000000000000 0001111111100000000000000 000000 00011234678999
Q ss_pred cEEEEEeCCCCCCChhHHHHHHHHhCCCcE---EEEe-CCCCCCCccChHHHHHHHHHHHHhh
Q 005554 623 KVLIIQGIKDPISDSKSKVAMFKEHCAGIV---IREL-DAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 623 PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~---~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
|+++|+|++|.+++.. . +.+.+..++++ ++++ ++||++++|+|+++++.|.+||+++
T Consensus 241 P~lii~G~~D~~~~~~-~-~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 241 PFLTAFSDSDPITGGG-D-AILQKRIPGAAGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred ceEEEecCCCCcccCc-h-HHHHhhcccccccceeeecCCCccchhhChHHHHHHHHHHHhcC
Confidence 9999999999999976 3 66777777765 6666 8999999999999999999999864
No 15
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms]
Probab=99.96 E-value=5.2e-29 Score=261.21 Aligned_cols=263 Identities=22% Similarity=0.291 Sum_probs=194.7
Q ss_pred CcEEEEEcCCCCCcCCHHHHHHHhC-CCeEEEEEECCcccccC--ChhHHHHHHHHHHHHHHHHHhcCCcEEEEECChHH
Q 005554 45 GSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVEN 121 (691)
Q Consensus 45 ~~~l~W~r~dlRl~DN~aL~~A~~~-~~~~~~f~~~~~~~~~~--~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g~~~~ 121 (691)
.++|+|||+|||+||||||.+|+.. +++.||||+||+..... |..+++||.|+|.+|+++|+++|++|++++|.|+.
T Consensus 5 ~~~v~wfr~~lR~~dnpal~~a~~~~~~~~~v~i~d~~~~~~~~~g~~~~~~l~qsL~~ld~sl~~l~~~L~v~~~~p~~ 84 (531)
T KOG0133|consen 5 SKSVHWFRKGLRLHDNPALLAAAAGKEPVRPVFILDPEEAGSSNVGRNRWRFLLQSLEDLDQSLRELNSRLFVFRGHPIA 84 (531)
T ss_pred cceEEecccCcccccChhhHHHhccCCCceeEEEeCHhHhhccccchhHHHHHHHHHHHHHHHHHHhCCceEEEeCCchH
Confidence 5689999999999999999877766 89999999999987654 88999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcceeccCC-----CCCCCcchhhHHhhcc
Q 005554 122 VIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN-----LNDLPVSHNEFRKLQR 196 (691)
Q Consensus 122 ~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~f~~~~~ 196 (691)
+|.++.++++++.|.++.+++++.+.||..++..+.+.|+ .+++...++++.++. .+++|..|..|+....
T Consensus 85 vl~~~~~~~~~~~l~~~~~~~p~~~vrD~~~~~~a~~l~i----~v~s~~s~~~~~~~~~i~~n~~k~pls~~~~~~~~~ 160 (531)
T KOG0133|consen 85 VLSRLLEQVGVQKLKFEYDMEPDGKVRDATIKSLATELGL----SVVSPVSHTLYLPDKIIEANGGKPPLSYKTFRGVCQ 160 (531)
T ss_pred HHhhhhhccceeEEEEEEeccCccccccHHHHHHHHHhhh----hhcccCchhhhcHHHHHHhcCCCCcccccccccccc
Confidence 9999999999999999999999999999999999999988 888888999999973 5999999999998755
Q ss_pred ccCCCCCCC------CccCCcCCC----CCCCCCChhhhhhhhccCcchhchhhhhhcccchhhhhhHHhhhcccccccc
Q 005554 197 PLTSPILPP------TLAGAKLEA----DWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRN 266 (691)
Q Consensus 197 ~~~~p~~~~------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~ 266 (691)
.+..|.-+. .++..+..+ ....+|+++.+++..+
T Consensus 161 ~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~v~~~e~l~~~~~------------------------------------ 204 (531)
T KOG0133|consen 161 SMSAPKIPALVLSGLAVEKHPNFLANSKASAVVPTLELLRFIPS------------------------------------ 204 (531)
T ss_pred ccccccccccccccccCCCChhhhhhcccccccCCchhhccCcc------------------------------------
Confidence 554331111 111111000 0012233332221100
Q ss_pred CCCCCCcccccCCcceeccCCCeeecCchHHHHHHHHHHHhhcCCCCCchHHHHHHhhhhcCCCCCcccccccccccccc
Q 005554 267 LNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGI 346 (691)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~LSpyL~~g~ 346 (691)
+ .. ...|.||++.|+.+|++||. .. .+.+..+..+.+.+.-....|+.|||||+|||
T Consensus 205 --~-------~~--------~~~~~~g~s~al~~l~~~l~----~~--~~~an~~~~~~~~~~~~~~s~~~Ls~yL~fg~ 261 (531)
T KOG0133|consen 205 --N-------YG--------EVVWRGGESEALKRLDAHLK----VP--LWVANLELRYSNANSRVKISTTVLSPYLKFGC 261 (531)
T ss_pred --c-------cc--------ccccCCcccchhHHHHHHhh----HH--HHHhhhhccccccchhcCCCccccccceeecc
Confidence 0 00 01389999999999999983 22 34443333222211122477889999999999
Q ss_pred cchhHHHH--HHHHHhhhcCCCccCC
Q 005554 347 ISRRGVHY--EAIKFEKERNAGFLSP 370 (691)
Q Consensus 347 ~~~~~~~~--~~~~~~~~~~~~~~~~ 370 (691)
+|.|.+++ ..++.......++.++
T Consensus 262 ~svr~~~~~~~~k~V~~~~~~~s~~~ 287 (531)
T KOG0133|consen 262 LSVRYFYRCVRLKQVKWKAKKNSLPP 287 (531)
T ss_pred ceeEeehhHhHHHHHHHhhhcccCCc
Confidence 99999994 4445444444444344
No 16
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.96 E-value=3.3e-27 Score=242.69 Aligned_cols=265 Identities=21% Similarity=0.233 Sum_probs=175.1
Q ss_pred CceEEEEEEEcCeEEEEEEeCCCCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC-cCCCHHHHHH
Q 005554 404 GVYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSE 482 (691)
Q Consensus 404 ~~~~~~~~~~~g~~i~y~~~g~~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-~~~s~~~~a~ 482 (691)
.++..++++++|.+++|...| ++|+|||+||++.+...|..++..|.+ +|+|+++|+||||.|+.+. ..++.+++++
T Consensus 12 ~~~~~~~~~~~~~~i~y~~~G-~~~~iv~lHG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~ 89 (286)
T PRK03204 12 YPFESRWFDSSRGRIHYIDEG-TGPPILLCHGNPTWSFLYRDIIVALRD-RFRCVAPDYLGFGLSERPSGFGYQIDEHAR 89 (286)
T ss_pred ccccceEEEcCCcEEEEEECC-CCCEEEEECCCCccHHHHHHHHHHHhC-CcEEEEECCCCCCCCCCCCccccCHHHHHH
Confidence 346667899999999999988 578999999999999999999999987 4999999999999998764 3688999999
Q ss_pred HHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHH
Q 005554 483 LLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLR 562 (691)
Q Consensus 483 dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (691)
++.+++++++.++++++||||||.+++.+|..+|++|+++|++++...................... ..... ...
T Consensus 90 ~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~ 164 (286)
T PRK03204 90 VIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPV---QYAIL--RRN 164 (286)
T ss_pred HHHHHHHHhCCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccc---hhhhh--hhh
Confidence 9999999999999999999999999999999999999999998875321111000000000000000 00000 000
Q ss_pred hhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhcc-ccCc----chHhhhc--CCCCcEEEEEeCCCCCC
Q 005554 563 LNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSF-KLSL----PLNYLLE--GFKEKVLIIQGIKDPIS 635 (691)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~l~--~i~~PvLiI~G~~D~~v 635 (691)
.....++.... ...........+......+............ .... .....+. .+++|||+|+|++|.++
T Consensus 165 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~ 241 (286)
T PRK03204 165 FFVERLIPAGT---EHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAF 241 (286)
T ss_pred HHHHHhccccc---cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCccc
Confidence 00011111100 0111111111221111111111111110000 0000 0001111 23899999999999998
Q ss_pred ChhHHHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHH
Q 005554 636 DSKSKVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWI 678 (691)
Q Consensus 636 p~~~~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL 678 (691)
++....+.+++..++.+++++ ++||++++|+|+++++.|.+||
T Consensus 242 ~~~~~~~~~~~~ip~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 242 RPKTILPRLRATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERF 285 (286)
T ss_pred CcHHHHHHHHHhcCCCeEEEcCCCcccccccCHHHHHHHHHHhc
Confidence 776566788889999999988 8999999999999999999997
No 17
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.96 E-value=2.7e-27 Score=239.96 Aligned_cols=250 Identities=19% Similarity=0.186 Sum_probs=162.8
Q ss_pred EEEEEEeCCCCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCE
Q 005554 417 QIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPV 496 (691)
Q Consensus 417 ~i~y~~~g~~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v 496 (691)
.|+|...|.+.|+|||+||+++++..|..++..|.++ |+|+++|+||||.|+.+. .++++++++++.+ +..+++
T Consensus 3 ~~~y~~~G~g~~~ivllHG~~~~~~~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~-~~~~~~~~~~l~~----~~~~~~ 76 (256)
T PRK10349 3 NIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSH-FTLHLVDLPGFGRSRGFG-ALSLADMAEAVLQ----QAPDKA 76 (256)
T ss_pred ccchhhcCCCCCeEEEECCCCCChhHHHHHHHHHhcC-CEEEEecCCCCCCCCCCC-CCCHHHHHHHHHh----cCCCCe
Confidence 3678888854567999999999999999999999875 999999999999998654 5788877776653 466899
Q ss_pred EEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCC
Q 005554 497 HLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTR 576 (691)
Q Consensus 497 ~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (691)
+++||||||.+++.+|.++|++|+++|++++++........ .. ........+.... ..........++.......
T Consensus 77 ~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~-~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 151 (256)
T PRK10349 77 IWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEW-PG---IKPDVLAGFQQQL-SDDFQRTVERFLALQTMGT 151 (256)
T ss_pred EEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCC-Cc---ccHHHHHHHHHHH-HhchHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999885332111000 00 0000000000000 0000111122221111001
Q ss_pred CccccHHHH--HHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEE
Q 005554 577 RERADDWLI--SEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIR 654 (691)
Q Consensus 577 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~ 654 (691)
........ ............ .............+....+.++++|||+|+|++|.++|.+ ..+.+.+.+++++++
T Consensus 152 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~-~~~~~~~~i~~~~~~ 228 (256)
T PRK10349 152 -ETARQDARALKKTVLALPMPEV-DVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRK-VVPMLDKLWPHSESY 228 (256)
T ss_pred -chHHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHH-HHHHHHHhCCCCeEE
Confidence 11111111 111111111111 1111111111123445678899999999999999999887 467788888999998
Q ss_pred Ee-CCCCCCCccChHHHHHHHHHHHHh
Q 005554 655 EL-DAGHCPHDEKPEEVNSIISEWIVT 680 (691)
Q Consensus 655 ~~-~~GH~~~~e~pe~v~~~I~~fL~~ 680 (691)
++ ++||++++|+|++|++.|.+|-++
T Consensus 229 ~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 229 IFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred EeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 88 899999999999999999998654
No 18
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.96 E-value=4.9e-27 Score=240.88 Aligned_cols=268 Identities=20% Similarity=0.171 Sum_probs=176.8
Q ss_pred ceEEEEEEEcCeEEEEEEeCCC-CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc-CCCHHHHHH
Q 005554 405 VYSTRIWRWNGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWSE 482 (691)
Q Consensus 405 ~~~~~~~~~~g~~i~y~~~g~~-~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~-~~s~~~~a~ 482 (691)
++..++++++|.+++|...|++ +|+|||+||++++...|..+++.|.+ +|+|+++|+||||.|+.+.. .++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~g~~~~~~vv~~hG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~ 83 (278)
T TIGR03056 5 RDCSRRVTVGPFHWHVQDMGPTAGPLLLLLHGTGASTHSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFRFRFTLPSMAE 83 (278)
T ss_pred CCccceeeECCEEEEEEecCCCCCCeEEEEcCCCCCHHHHHHHHHHHhh-CcEEEeecCCCCCCCCCccccCCCHHHHHH
Confidence 3445678899999999999864 78999999999999999999999987 59999999999999987665 789999999
Q ss_pred HHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHH--
Q 005554 483 LLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFY-- 560 (691)
Q Consensus 483 dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 560 (691)
++.+++++++.++++|+||||||.+++.+|.++|++++++|++++.................................
T Consensus 84 ~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (278)
T TIGR03056 84 DLSALCAAEGLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAA 163 (278)
T ss_pred HHHHHHHHcCCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcc
Confidence 999999999989999999999999999999999999999999988643211100000000000000000000000000
Q ss_pred HHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcc-hHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhH
Q 005554 561 LRLNISNFVKQCYPTRRERADDWLISEMLRASYDPG-VLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKS 639 (691)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~ 639 (691)
........+... ...........+........ ..........+. ..+....++++++|+++|+|++|.++|++.
T Consensus 164 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~P~lii~g~~D~~vp~~~ 238 (278)
T TIGR03056 164 DQQRVERLIRDT----GSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWD-LAPLNRDLPRITIPLHLIAGEEDKAVPPDE 238 (278)
T ss_pred cCcchhHHhhcc----ccccccchhhHHHHhhcCchhhhHHHHHhhccc-ccchhhhcccCCCCEEEEEeCCCcccCHHH
Confidence 000000111000 00000000000000000000 001111111111 112334577899999999999999999874
Q ss_pred HHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHH
Q 005554 640 KVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIV 679 (691)
Q Consensus 640 ~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~ 679 (691)
.+.+.+..++.+++++ ++||++++|+|+++++.|.+|++
T Consensus 239 -~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 239 -SKRAATRVPTATLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred -HHHHHHhccCCeEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 5556777888888888 88999999999999999999984
No 19
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.95 E-value=1.6e-26 Score=237.73 Aligned_cols=256 Identities=18% Similarity=0.206 Sum_probs=164.3
Q ss_pred CeEEEEEEeCCCCCeEEEEcCCCCChHHHHH---HHHHHhcCCCEEEEeCCCCCcCCCCCCcC-CCHHHHHHHHHHHHHH
Q 005554 415 GYQIQYTVAGKEGPAILLVHGFGAFLEHYRD---NIYDIADGGNRVWAITLLGFGRSEKPNIV-YTELMWSELLRDFTVE 490 (691)
Q Consensus 415 g~~i~y~~~g~~~p~VlliHG~~~~~~~~~~---~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~-~s~~~~a~dl~~ll~~ 490 (691)
|.+++|...| ++|+|||+||++++...|.. .+..|.+.||+|+++|+||||.|+.+..+ .....+++++.++++.
T Consensus 19 ~~~~~y~~~g-~~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~ 97 (282)
T TIGR03343 19 NFRIHYNEAG-NGEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDA 97 (282)
T ss_pred ceeEEEEecC-CCCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCcccccchhHHHHHHHHHH
Confidence 6789999888 57899999999988777754 45567677899999999999999865322 2222568999999999
Q ss_pred hCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHH
Q 005554 491 VVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVK 570 (691)
Q Consensus 491 l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (691)
++.++++++||||||.+++.+|.++|++|+++|++++...........+... ........ ..........++.
T Consensus 98 l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~ 170 (282)
T TIGR03343 98 LDIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEG------IKLLFKLY-AEPSYETLKQMLN 170 (282)
T ss_pred cCCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHH------HHHHHHHh-cCCCHHHHHHHHh
Confidence 9999999999999999999999999999999999997632111000000000 00000000 0000000111111
Q ss_pred hhcCCCCccccHHHHHHHHHh-cCCcchHHHHHHHhc--cccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHh
Q 005554 571 QCYPTRRERADDWLISEMLRA-SYDPGVLVVLESIFS--FKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEH 647 (691)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~ 647 (691)
... ...........+..... ...+........... .....+....+.++++|+|+|+|++|.+++++ ..+.+.+.
T Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~-~~~~~~~~ 248 (282)
T TIGR03343 171 VFL-FDQSLITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLD-HGLKLLWN 248 (282)
T ss_pred hCc-cCcccCcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCch-hHHHHHHh
Confidence 111 01111111111111110 011111111100000 01122344567899999999999999999987 45667777
Q ss_pred CCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHh
Q 005554 648 CAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVT 680 (691)
Q Consensus 648 ~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~ 680 (691)
.++++++++ ++||++++|+|+++++.|.+||+.
T Consensus 249 ~~~~~~~~i~~agH~~~~e~p~~~~~~i~~fl~~ 282 (282)
T TIGR03343 249 MPDAQLHVFSRCGHWAQWEHADAFNRLVIDFLRN 282 (282)
T ss_pred CCCCEEEEeCCCCcCCcccCHHHHHHHHHHHhhC
Confidence 899999888 899999999999999999999963
No 20
>PLN02965 Probable pheophorbidase
Probab=99.95 E-value=2.4e-27 Score=239.94 Aligned_cols=243 Identities=16% Similarity=0.109 Sum_probs=157.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC-cCCCHHHHHHHHHHHHHHhCC-cCEEEEEeChhHH
Q 005554 429 AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVVG-EPVHLIGNSIGGY 506 (691)
Q Consensus 429 ~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-~~~s~~~~a~dl~~ll~~l~~-~~v~lvGhS~GG~ 506 (691)
+|||+||++.+...|..+++.|.+.||+|+++|+||||.|+.+. ..++++++++|+.++++.++. ++++++||||||.
T Consensus 5 ~vvllHG~~~~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~ 84 (255)
T PLN02965 5 HFVFVHGASHGAWCWYKLATLLDAAGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLPPDHKVILVGHSIGGG 84 (255)
T ss_pred EEEEECCCCCCcCcHHHHHHHHhhCCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcCCCCCEEEEecCcchH
Confidence 69999999999999999999998778999999999999998654 368899999999999999987 5999999999999
Q ss_pred HHHHHHHhCccccceEEEecCCCCCCCchhhhhhh--hhhhcCChhhh-hhHHHHHHHH-hhHHHHHHhhcCCCCccccH
Q 005554 507 FVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFS--NERQASGPIRL-GAQLLLFYLR-LNISNFVKQCYPTRRERADD 582 (691)
Q Consensus 507 ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 582 (691)
+++.+|.++|++|+++|++++.............. ........... .......... .....+....+.... ....
T Consensus 85 ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 163 (255)
T PLN02965 85 SVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRHYYYNQS-PLED 163 (255)
T ss_pred HHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHHHHhcCC-CHHH
Confidence 99999999999999999999863211000000000 00000000000 0000000000 000001101000000 0000
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCCCC
Q 005554 583 WLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-DAGHC 661 (691)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~ 661 (691)
.. ............. .... .+....+..+++|+++|+|++|.++|++ ..+.+.+..++++++++ ++||+
T Consensus 164 ~~--~~~~~~~~~~~~~-~~~~------~~~~~~~~~i~vP~lvi~g~~D~~~~~~-~~~~~~~~~~~a~~~~i~~~GH~ 233 (255)
T PLN02965 164 YT--LSSKLLRPAPVRA-FQDL------DKLPPNPEAEKVPRVYIKTAKDNLFDPV-RQDVMVENWPPAQTYVLEDSDHS 233 (255)
T ss_pred HH--HHHHhcCCCCCcc-hhhh------hhccchhhcCCCCEEEEEcCCCCCCCHH-HHHHHHHhCCcceEEEecCCCCc
Confidence 00 0000000000000 0000 0111234578999999999999999997 57788889999998887 89999
Q ss_pred CCccChHHHHHHHHHHHHhhh
Q 005554 662 PHDEKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 662 ~~~e~pe~v~~~I~~fL~~~~ 682 (691)
+++|+|++|++.|.+|++..+
T Consensus 234 ~~~e~p~~v~~~l~~~~~~~~ 254 (255)
T PLN02965 234 AFFSVPTTLFQYLLQAVSSLQ 254 (255)
T ss_pred hhhcCHHHHHHHHHHHHHHhc
Confidence 999999999999999998754
No 21
>PRK06489 hypothetical protein; Provisional
Probab=99.95 E-value=2.1e-26 Score=244.64 Aligned_cols=268 Identities=15% Similarity=0.138 Sum_probs=169.5
Q ss_pred EcCeEEEEEEeCCC--------CCeEEEEcCCCCChHHHH--HHHHHH-------hcCCCEEEEeCCCCCcCCCCCCc--
Q 005554 413 WNGYQIQYTVAGKE--------GPAILLVHGFGAFLEHYR--DNIYDI-------ADGGNRVWAITLLGFGRSEKPNI-- 473 (691)
Q Consensus 413 ~~g~~i~y~~~g~~--------~p~VlliHG~~~~~~~~~--~~~~~L-------~~~G~~Vi~~D~~G~G~S~~~~~-- 473 (691)
.+|.+++|...|++ +|+|||+||++++...|. .+...| ..++|+||++|+||||.|+.+..
T Consensus 47 ~~g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~~ 126 (360)
T PRK06489 47 LPELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDGL 126 (360)
T ss_pred cCCceEEEEecCCCCcccccCCCCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcCC
Confidence 67899999999863 689999999999988875 455544 13469999999999999987643
Q ss_pred -----CCCHHHHHHHHHHHH-HHhCCcCEE-EEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchh--hhhh-hhh
Q 005554 474 -----VYTELMWSELLRDFT-VEVVGEPVH-LIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYS--FLQF-SNE 543 (691)
Q Consensus 474 -----~~s~~~~a~dl~~ll-~~l~~~~v~-lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~--~~~~-~~~ 543 (691)
.++++++++++.+++ +++++++++ ++||||||++|+.+|.++|++|+++|++++.+....... .... ...
T Consensus 127 ~~~~~~~~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~ 206 (360)
T PRK06489 127 RAAFPRYDYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIES 206 (360)
T ss_pred CCCCCcccHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHH
Confidence 489999999988854 889998885 899999999999999999999999999988643211110 0000 000
Q ss_pred hhc--CCh--h-hhhhHHHHHHHHhhHHHH-----HHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcch
Q 005554 544 RQA--SGP--I-RLGAQLLLFYLRLNISNF-----VKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPL 613 (691)
Q Consensus 544 ~~~--~~~--~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (691)
... .+. . ............. ...+ ................................. .........+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~ 284 (360)
T PRK06489 207 IRNDPAWNNGNYTTQPPSLKRANPM-FAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFL-YQWDSSRDYNP 284 (360)
T ss_pred HHhCCCCCCCCCCCCHHHHHHHHHH-HHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHH-HHHHHhhccCh
Confidence 000 000 0 0000000000000 0000 000000000000111112111111111111111 11111122345
Q ss_pred HhhhcCCCCcEEEEEeCCCCCCChhHH-HHHHHHhCCCcEEEEe-CC----CCCCCccChHHHHHHHHHHHHhhhC
Q 005554 614 NYLLEGFKEKVLIIQGIKDPISDSKSK-VAMFKEHCAGIVIREL-DA----GHCPHDEKPEEVNSIISEWIVTIES 683 (691)
Q Consensus 614 ~~~l~~i~~PvLiI~G~~D~~vp~~~~-~~~~~~~~~~~~~~~~-~~----GH~~~~e~pe~v~~~I~~fL~~~~~ 683 (691)
...+.+|++|||+|+|++|.++|++.. .+.+.+.+|+++++++ ++ ||+++ |+|+++++.|.+||+++..
T Consensus 285 ~~~L~~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip~a~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~~~~ 359 (360)
T PRK06489 285 SPDLEKIKAPVLAINSADDERNPPETGVMEAALKRVKHGRLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQVPK 359 (360)
T ss_pred HHHHHhCCCCEEEEecCCCcccChhhHHHHHHHHhCcCCeEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHhccc
Confidence 567889999999999999999998743 2667888899999888 65 99997 8999999999999987653
No 22
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.95 E-value=4.9e-26 Score=244.25 Aligned_cols=272 Identities=19% Similarity=0.250 Sum_probs=174.0
Q ss_pred ceEEEEEEEcCeEEEEEEeCCC----CCeEEEEcCCCCChHHHHH-HHHHHh---cCCCEEEEeCCCCCcCCCCCC-cCC
Q 005554 405 VYSTRIWRWNGYQIQYTVAGKE----GPAILLVHGFGAFLEHYRD-NIYDIA---DGGNRVWAITLLGFGRSEKPN-IVY 475 (691)
Q Consensus 405 ~~~~~~~~~~g~~i~y~~~g~~----~p~VlliHG~~~~~~~~~~-~~~~L~---~~G~~Vi~~D~~G~G~S~~~~-~~~ 475 (691)
.....+...+|.+++|...++. +|+|||+||++++...|.. ++..|. +.+|+|+++|+||||.|+.+. ..+
T Consensus 175 ~~~~~~~~~~~~~l~~~~~gp~~~~~k~~VVLlHG~~~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~~~y 254 (481)
T PLN03087 175 KFCTSWLSSSNESLFVHVQQPKDNKAKEDVLFIHGFISSSAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPADSLY 254 (481)
T ss_pred ceeeeeEeeCCeEEEEEEecCCCCCCCCeEEEECCCCccHHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCCCcC
Confidence 4455677888999999998864 4799999999999999985 446665 358999999999999998764 468
Q ss_pred CHHHHHHHHH-HHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhh-hhhh-hh--hhcCChh
Q 005554 476 TELMWSELLR-DFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSF-LQFS-NE--RQASGPI 550 (691)
Q Consensus 476 s~~~~a~dl~-~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~-~~~~-~~--~~~~~~~ 550 (691)
+++++++++. .+++.++.++++++||||||.+++.+|.++|++|+++|+++++....+.... .... .. ....+..
T Consensus 255 tl~~~a~~l~~~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (481)
T PLN03087 255 TLREHLEMIERSVLERYKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQATQYVMRKVAPRRVWPP 334 (481)
T ss_pred CHHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHHHHHHHHhcccccCCc
Confidence 9999999995 8999999999999999999999999999999999999999986543332110 0000 00 0000000
Q ss_pred hhhhHHHHHHHH---hh----------HHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhcc-c--cCcchH
Q 005554 551 RLGAQLLLFYLR---LN----------ISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSF-K--LSLPLN 614 (691)
Q Consensus 551 ~~~~~~~~~~~~---~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~ 614 (691)
.........+.. .. ....+..... .........+.......... ...+..+... . ......
T Consensus 335 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~-~~~l~~~i~~~~~~l~~~l~ 411 (481)
T PLN03087 335 IAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLT--RNRMRTFLIEGFFCHTHNAA-WHTLHNIICGSGSKLDGYLD 411 (481)
T ss_pred cccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhh--hhhhhHHHHHHHHhccchhh-HHHHHHHHhchhhhhhhHHH
Confidence 000000000000 00 0000000000 00000111111110000000 0011111100 0 001122
Q ss_pred hhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCCCCCCc-cChHHHHHHHHHHHHh
Q 005554 615 YLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-DAGHCPHD-EKPEEVNSIISEWIVT 680 (691)
Q Consensus 615 ~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~~~~-e~pe~v~~~I~~fL~~ 680 (691)
....++++|+|+|+|++|.++|++. .+.+++.+|+++++++ ++||++++ |+|+++++.|.+|...
T Consensus 412 ~l~~~I~vPtLII~Ge~D~ivP~~~-~~~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 412 HVRDQLKCDVAIFHGGDDELIPVEC-SYAVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred HHHHhCCCCEEEEEECCCCCCCHHH-HHHHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 2344799999999999999999984 5667888899999988 99999986 9999999999999965
No 23
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.95 E-value=3e-26 Score=242.00 Aligned_cols=270 Identities=16% Similarity=0.178 Sum_probs=168.9
Q ss_pred ceEEEEEEEcCeEEEEEEeCCCCCeEEEEcCCCCChH------------HHHHHHH---HHhcCCCEEEEeCCCCCcCCC
Q 005554 405 VYSTRIWRWNGYQIQYTVAGKEGPAILLVHGFGAFLE------------HYRDNIY---DIADGGNRVWAITLLGFGRSE 469 (691)
Q Consensus 405 ~~~~~~~~~~g~~i~y~~~g~~~p~VlliHG~~~~~~------------~~~~~~~---~L~~~G~~Vi~~D~~G~G~S~ 469 (691)
++...+.+.+|.+|+|...|+.++++||+||++++.. .|..++. .|...+|+||++|+||||.|.
T Consensus 35 ~~~~~~~~~~~~~l~y~~~G~~~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~ 114 (343)
T PRK08775 35 PLSMRHAGLEDLRLRYELIGPAGAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSL 114 (343)
T ss_pred ceeecCCCCCCceEEEEEeccCCCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCC
Confidence 5666677789999999999965656777776665544 6888886 574346999999999999884
Q ss_pred CCCcCCCHHHHHHHHHHHHHHhCCcCE-EEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhh-hhhhhhcC
Q 005554 470 KPNIVYTELMWSELLRDFTVEVVGEPV-HLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQ-FSNERQAS 547 (691)
Q Consensus 470 ~~~~~~s~~~~a~dl~~ll~~l~~~~v-~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~-~~~~~~~~ 547 (691)
...++++++++|+.+++++++++++ +|+||||||++++.+|.++|++|+++|++++.....+...... ........
T Consensus 115 --~~~~~~~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~ 192 (343)
T PRK08775 115 --DVPIDTADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVAL 192 (343)
T ss_pred --CCCCCHHHHHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHc
Confidence 3367889999999999999999764 7999999999999999999999999999998643221110000 00000000
Q ss_pred C----hhhhhhHHHHH--HHH-hhHHHHHHhhcCCCCc--------cccHHHHHH---HHHhcCCcchHHHHHHHhcccc
Q 005554 548 G----PIRLGAQLLLF--YLR-LNISNFVKQCYPTRRE--------RADDWLISE---MLRASYDPGVLVVLESIFSFKL 609 (691)
Q Consensus 548 ~----~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 609 (691)
. ........... ... .....+... +..... ......... .................. .
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~ 268 (343)
T PRK08775 193 GQLQCAEKHGLALARQLAMLSYRTPEEFEER-FDAPPEVINGRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESID---L 268 (343)
T ss_pred CCCCCCchhHHHHHHHHHHHHcCCHHHHHHH-hCCCccccCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHh---h
Confidence 0 00000000000 000 000111111 111100 001111111 111111111111111100 0
Q ss_pred CcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-C-CCCCCCccChHHHHHHHHHHHHhhhC
Q 005554 610 SLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-D-AGHCPHDEKPEEVNSIISEWIVTIES 683 (691)
Q Consensus 610 ~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~-~GH~~~~e~pe~v~~~I~~fL~~~~~ 683 (691)
. ...+.+|++|+|+|+|++|.++|++...+..+...++++++++ + +||++++|+|++|++.|.+||++...
T Consensus 269 ~---~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~~~~ 341 (343)
T PRK08775 269 H---RVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRSTGE 341 (343)
T ss_pred c---CCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHhccc
Confidence 0 1135789999999999999999988555554445578888888 5 89999999999999999999987653
No 24
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.95 E-value=2.1e-25 Score=235.14 Aligned_cols=259 Identities=19% Similarity=0.158 Sum_probs=169.3
Q ss_pred EEEcCeEEEEEEeCCC-CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc----CCCHHHHHHHHH
Q 005554 411 WRWNGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI----VYTELMWSELLR 485 (691)
Q Consensus 411 ~~~~g~~i~y~~~g~~-~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~----~~s~~~~a~dl~ 485 (691)
++.+|.+++|...|+. +|+|||+||++++...|+.++..|.+ +|+|+++|+||||.|+.+.. .++++++++++.
T Consensus 110 ~~~~~~~~~y~~~G~~~~~~ivllHG~~~~~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~~l~ 188 (383)
T PLN03084 110 ASSDLFRWFCVESGSNNNPPVLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVSSLE 188 (383)
T ss_pred EcCCceEEEEEecCCCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCcccccccCCHHHHHHHHH
Confidence 4578999999999864 78999999999999999999999986 69999999999999987653 589999999999
Q ss_pred HHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhH
Q 005554 486 DFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNI 565 (691)
Q Consensus 486 ~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (691)
+++++++.++++|+|||+||.+++.+|..+|++|+++|+++++....... .+..... ..................
T Consensus 189 ~~i~~l~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~--~p~~l~~---~~~~l~~~~~~~~~~~~~ 263 (383)
T PLN03084 189 SLIDELKSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAK--LPSTLSE---FSNFLLGEIFSQDPLRAS 263 (383)
T ss_pred HHHHHhCCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCcccccc--chHHHHH---HHHHHhhhhhhcchHHHH
Confidence 99999999999999999999999999999999999999999864321100 0000000 000000000000000000
Q ss_pred HHHHHhhcCCCCccccHHHHHHHHHhcCCcch-----HHHHHHHhccccC--cchHhh--hcCCCCcEEEEEeCCCCCCC
Q 005554 566 SNFVKQCYPTRRERADDWLISEMLRASYDPGV-----LVVLESIFSFKLS--LPLNYL--LEGFKEKVLIIQGIKDPISD 636 (691)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~--l~~i~~PvLiI~G~~D~~vp 636 (691)
...+.. .......+.....+.......+. ......+...... ...... ...+++|||+|+|+.|.+++
T Consensus 264 ~~~~~~---~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~ 340 (383)
T PLN03084 264 DKALTS---CGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLN 340 (383)
T ss_pred hhhhcc---cCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcC
Confidence 000100 00111111111122111111110 0011111110000 001111 13689999999999999999
Q ss_pred hhHHHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHh
Q 005554 637 SKSKVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVT 680 (691)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~ 680 (691)
.+.. +.+.+. ++.+++++ ++||++++|+|+++++.|.+||++
T Consensus 341 ~~~~-~~~a~~-~~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 341 YDGV-EDFCKS-SQHKLIELPMAGHHVQEDCGEELGGIISGILSK 383 (383)
T ss_pred HHHH-HHHHHh-cCCeEEEECCCCCCcchhCHHHHHHHHHHHhhC
Confidence 8754 444444 47788777 899999999999999999999863
No 25
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.94 E-value=3.3e-25 Score=224.42 Aligned_cols=234 Identities=19% Similarity=0.188 Sum_probs=156.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHH
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGY 506 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ 506 (691)
+|+|||+||++++...|..++..|.+ +|+|+++|+||||.|..+. .++++++++|+.++++.++.++++|+||||||.
T Consensus 16 ~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~s~~~~-~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~Gg~ 93 (255)
T PRK10673 16 NSPIVLVHGLFGSLDNLGVLARDLVN-DHDIIQVDMRNHGLSPRDP-VMNYPAMAQDLLDTLDALQIEKATFIGHSMGGK 93 (255)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHhh-CCeEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceEEEEECHHHH
Confidence 78999999999999999999999987 5999999999999998654 689999999999999999999999999999999
Q ss_pred HHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHHHHH
Q 005554 507 FVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLIS 586 (691)
Q Consensus 507 ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (691)
+++.+|.++|++|+++|++++................. ...... ...........+..... . .....
T Consensus 94 va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~--~----~~~~~ 160 (255)
T PRK10673 94 AVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAI-----NAVSEA--GATTRQQAAAIMRQHLN--E----EGVIQ 160 (255)
T ss_pred HHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHH-----HHhhhc--ccccHHHHHHHHHHhcC--C----HHHHH
Confidence 99999999999999999998643221100000000000 000000 00000000001111100 0 00000
Q ss_pred HHHHhcCCc----chHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCCCC
Q 005554 587 EMLRASYDP----GVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-DAGHC 661 (691)
Q Consensus 587 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~ 661 (691)
......... ........... ......+..+++|+|+|+|++|..++.+ ..+.+.+..++++++++ ++||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~P~l~i~G~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~gH~ 235 (255)
T PRK10673 161 FLLKSFVDGEWRFNVPVLWDQYPH----IVGWEKIPAWPHPALFIRGGNSPYVTEA-YRDDLLAQFPQARAHVIAGAGHW 235 (255)
T ss_pred HHHhcCCcceeEeeHHHHHHhHHH----HhCCcccCCCCCCeEEEECCCCCCCCHH-HHHHHHHhCCCcEEEEeCCCCCe
Confidence 000000000 00000000000 0001235678999999999999999987 56767888899998888 99999
Q ss_pred CCccChHHHHHHHHHHHHh
Q 005554 662 PHDEKPEEVNSIISEWIVT 680 (691)
Q Consensus 662 ~~~e~pe~v~~~I~~fL~~ 680 (691)
+++++|+++++.|.+||++
T Consensus 236 ~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 236 VHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred eeccCHHHHHHHHHHHHhc
Confidence 9999999999999999975
No 26
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.94 E-value=2.8e-25 Score=223.17 Aligned_cols=247 Identities=18% Similarity=0.213 Sum_probs=165.8
Q ss_pred EEEEEeCCC--CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcC
Q 005554 418 IQYTVAGKE--GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEP 495 (691)
Q Consensus 418 i~y~~~g~~--~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~ 495 (691)
++|...|++ +|+|||+||++++...|.++++.|.+ ||+|+++|+||||.|+.+...++++++++++.++++.++.++
T Consensus 2 ~~~~~~g~~~~~~~li~~hg~~~~~~~~~~~~~~l~~-~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (251)
T TIGR02427 2 LHYRLDGAADGAPVLVFINSLGTDLRMWDPVLPALTP-DFRVLRYDKRGHGLSDAPEGPYSIEDLADDVLALLDHLGIER 80 (251)
T ss_pred ceEEeecCCCCCCeEEEEcCcccchhhHHHHHHHhhc-ccEEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCc
Confidence 567777753 67899999999999999999999875 799999999999999877778899999999999999999999
Q ss_pred EEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCC
Q 005554 496 VHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPT 575 (691)
Q Consensus 496 v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (691)
++++||||||++++.+|.++|++|+++|+++++.................... ...........++...+..
T Consensus 81 v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 152 (251)
T TIGR02427 81 AVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEG--------LAALADAVLERWFTPGFRE 152 (251)
T ss_pred eEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhcc--------HHHHHHHHHHHHccccccc
Confidence 99999999999999999999999999999987643211100000000000000 0000000111111111110
Q ss_pred CCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEE
Q 005554 576 RRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIRE 655 (691)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~ 655 (691)
........+........... ...........+....+.++++|+++++|++|.++|.+. .+.+.+..++.++++
T Consensus 153 ----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~-~~~~~~~~~~~~~~~ 226 (251)
T TIGR02427 153 ----AHPARLDLYRNMLVRQPPDG-YAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPEL-VREIADLVPGARFAE 226 (251)
T ss_pred ----CChHHHHHHHHHHHhcCHHH-HHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHH-HHHHHHhCCCceEEE
Confidence 00011111111000000000 001111111223445677899999999999999999984 455666678888888
Q ss_pred e-CCCCCCCccChHHHHHHHHHHHH
Q 005554 656 L-DAGHCPHDEKPEEVNSIISEWIV 679 (691)
Q Consensus 656 ~-~~GH~~~~e~pe~v~~~I~~fL~ 679 (691)
+ ++||++++++|+++++.|.+|++
T Consensus 227 ~~~~gH~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 227 IRGAGHIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred ECCCCCcccccChHHHHHHHHHHhC
Confidence 7 89999999999999999999984
No 27
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.94 E-value=1.2e-25 Score=238.05 Aligned_cols=257 Identities=18% Similarity=0.226 Sum_probs=167.2
Q ss_pred EEEEEcCeEEEEEEeCCC----CCeEEEEcCCCCChH-HHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc-CCCHHHHHH
Q 005554 409 RIWRWNGYQIQYTVAGKE----GPAILLVHGFGAFLE-HYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWSE 482 (691)
Q Consensus 409 ~~~~~~g~~i~y~~~g~~----~p~VlliHG~~~~~~-~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~-~~s~~~~a~ 482 (691)
.++..+|.+|+|..+++. +++|||+||++++.. .|..++..|.++||+|+++|+||||.|+.+.. ..+++++++
T Consensus 65 ~~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~ 144 (349)
T PLN02385 65 YEVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGLHGYIPSFDDLVD 144 (349)
T ss_pred eEEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCcCCHHHHHH
Confidence 455668999999988752 568999999998865 46789999998899999999999999987543 358899999
Q ss_pred HHHHHHHHhCC------cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHH
Q 005554 483 LLRDFTVEVVG------EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQL 556 (691)
Q Consensus 483 dl~~ll~~l~~------~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (691)
|+.++++.+.. .+++|+||||||++++.++.++|++|+++|+++|........... .........
T Consensus 145 dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~--------~~~~~~~~~- 215 (349)
T PLN02385 145 DVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPP--------PLVLQILIL- 215 (349)
T ss_pred HHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCc--------hHHHHHHHH-
Confidence 99999988754 379999999999999999999999999999999864321110000 000000000
Q ss_pred HHHHHHhhHHHHHHhhcCCCC--cc-ccHHHHHHHHHh----cC-CcchHHHHHHHhccccCcchHhhhcCCCCcEEEEE
Q 005554 557 LLFYLRLNISNFVKQCYPTRR--ER-ADDWLISEMLRA----SY-DPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQ 628 (691)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~ 628 (691)
... ..... ...+... .. ............ .. ........ ..+.. ..+....+.++++|+|+|+
T Consensus 216 ---~~~-~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~--~~~~~~~l~~i~~P~Lii~ 286 (349)
T PLN02385 216 ---LAN-LLPKA--KLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAV-ELLRT--TQEIEMQLEEVSLPLLILH 286 (349)
T ss_pred ---HHH-HCCCc--eecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHH-HHHHH--HHHHHHhcccCCCCEEEEE
Confidence 000 00000 0000000 00 000000000000 00 00111111 11110 1123345778999999999
Q ss_pred eCCCCCCChhHHHHHHHHhC-CCcEEEEe-CCCCCCCccChHH----HHHHHHHHHHhhhC
Q 005554 629 GIKDPISDSKSKVAMFKEHC-AGIVIREL-DAGHCPHDEKPEE----VNSIISEWIVTIES 683 (691)
Q Consensus 629 G~~D~~vp~~~~~~~~~~~~-~~~~~~~~-~~GH~~~~e~pe~----v~~~I~~fL~~~~~ 683 (691)
|++|.++|++....+.+... ++++++++ ++||+++.|+|++ +++.|.+||++...
T Consensus 287 G~~D~vv~~~~~~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 287 GEADKVTDPSVSKFLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred eCCCCccChHHHHHHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 99999999986555554443 56788887 8999999999986 88899999997653
No 28
>PHA02857 monoglyceride lipase; Provisional
Probab=99.94 E-value=2.6e-25 Score=228.06 Aligned_cols=254 Identities=19% Similarity=0.242 Sum_probs=161.6
Q ss_pred EEEEcCeEEEEEEeCCC---CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc-CCCHHHHHHHHH
Q 005554 410 IWRWNGYQIQYTVAGKE---GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWSELLR 485 (691)
Q Consensus 410 ~~~~~g~~i~y~~~g~~---~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~-~~s~~~~a~dl~ 485 (691)
++..+|.+|+|..+.+. ++.|+++||+++++..|..+++.|.++||+|+++|+||||.|+.... ..++.++.+|+.
T Consensus 5 ~~~~~g~~l~~~~~~~~~~~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~~~~~~~~~~d~~ 84 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPITYPKALVFISHGAGEHSGRYEELAENISSLGILVFSHDHIGHGRSNGEKMMIDDFGVYVRDVV 84 (276)
T ss_pred eecCCCCEEEEEeccCCCCCCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccCCCCCCCCCccCCcCCHHHHHHHHH
Confidence 55668999999877542 45677779999999999999999999999999999999999976432 235566667777
Q ss_pred HHHHHh----CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHH
Q 005554 486 DFTVEV----VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYL 561 (691)
Q Consensus 486 ~ll~~l----~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (691)
..+..+ ...+++|+||||||.+++.+|.++|++|+++|+++|........ ....+.........
T Consensus 85 ~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~------------~~~~~~~~~~~~~~ 152 (276)
T PHA02857 85 QHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVP------------RLNLLAAKLMGIFY 152 (276)
T ss_pred HHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccccceEEEecccccccccc------------HHHHHHHHHHHHhC
Confidence 766554 34689999999999999999999999999999999864311000 00000000000000
Q ss_pred HhhHHHHHHhhcCCCCccccHHHHHHHHHhcCC---cchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChh
Q 005554 562 RLNISNFVKQCYPTRRERADDWLISEMLRASYD---PGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSK 638 (691)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~ 638 (691)
.. .......+......... ...+...... ............. ..+....+.++++|||+|+|++|.++|++
T Consensus 153 ~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~i~~Pvliv~G~~D~i~~~~ 226 (276)
T PHA02857 153 PN---KIVGKLCPESVSRDMDE-VYKYQYDPLVNHEKIKAGFASQVLKA--TNKVRKIIPKIKTPILILQGTNNEISDVS 226 (276)
T ss_pred CC---CccCCCCHhhccCCHHH-HHHHhcCCCccCCCccHHHHHHHHHH--HHHHHHhcccCCCCEEEEecCCCCcCChH
Confidence 00 00000000000000000 0000000000 0000011111110 11233467789999999999999999998
Q ss_pred HHHHHHHHhCCCcEEEEe-CCCCCCCccCh---HHHHHHHHHHHHhh
Q 005554 639 SKVAMFKEHCAGIVIREL-DAGHCPHDEKP---EEVNSIISEWIVTI 681 (691)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~-~~GH~~~~e~p---e~v~~~I~~fL~~~ 681 (691)
...++.+...++++++++ ++||.++.|.+ +++.+.|.+||++.
T Consensus 227 ~~~~l~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 227 GAYYFMQHANCNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HHHHHHHHccCCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 766665555567888877 89999999976 67999999999985
No 29
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.94 E-value=4.6e-25 Score=223.00 Aligned_cols=250 Identities=18% Similarity=0.233 Sum_probs=163.0
Q ss_pred EEEEEeCC---CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC-cCCCHHHHHHHHHHHHHHhCC
Q 005554 418 IQYTVAGK---EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVVG 493 (691)
Q Consensus 418 i~y~~~g~---~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-~~~s~~~~a~dl~~ll~~l~~ 493 (691)
|+|...|+ ++|+|||+||++++...|..++..|.+ ||+|+++|+||||.|..+. ..++++++++++.++++.++.
T Consensus 1 ~~~~~~~~~~~~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (257)
T TIGR03611 1 MHYELHGPPDADAPVVVLSSGLGGSGSYWAPQLDVLTQ-RFHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDALNI 79 (257)
T ss_pred CEEEEecCCCCCCCEEEEEcCCCcchhHHHHHHHHHHh-ccEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHHhCC
Confidence 46677774 478999999999999999999988876 6999999999999998653 568999999999999999999
Q ss_pred cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHH--Hh
Q 005554 494 EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFV--KQ 571 (691)
Q Consensus 494 ~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 571 (691)
++++++||||||.+++.+|.++|++|+++|++++.....+..... ... ...+...... ..+.... ..++ ..
T Consensus 80 ~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~---~~~~~~~-~~~~~~~~ 152 (257)
T TIGR03611 80 ERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRC-FDV--RIALLQHAGP---EAYVHAQ-ALFLYPAD 152 (257)
T ss_pred CcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHH-HHH--HHHHHhccCc---chhhhhh-hhhhcccc
Confidence 999999999999999999999999999999998754321110000 000 0000000000 0000000 0000 00
Q ss_pred hcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCc
Q 005554 572 CYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGI 651 (691)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~ 651 (691)
+................................ ...+....+..+++|+++++|++|.++|++. .+.+.+..++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~-~~~~~~~~~~~ 227 (257)
T TIGR03611 153 WISENAARLAADEAHALAHFPGKANVLRRINAL----EAFDVSARLDRIQHPVLLIANRDDMLVPYTQ-SLRLAAALPNA 227 (257)
T ss_pred HhhccchhhhhhhhhcccccCccHHHHHHHHHH----HcCCcHHHhcccCccEEEEecCcCcccCHHH-HHHHHHhcCCc
Confidence 000000000000000000000000011111111 1122335677899999999999999999985 45566667888
Q ss_pred EEEEe-CCCCCCCccChHHHHHHHHHHHHh
Q 005554 652 VIREL-DAGHCPHDEKPEEVNSIISEWIVT 680 (691)
Q Consensus 652 ~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~ 680 (691)
+++++ ++||++++++|+++++.|.+||++
T Consensus 228 ~~~~~~~~gH~~~~~~~~~~~~~i~~fl~~ 257 (257)
T TIGR03611 228 QLKLLPYGGHASNVTDPETFNRALLDFLKT 257 (257)
T ss_pred eEEEECCCCCCccccCHHHHHHHHHHHhcC
Confidence 88877 899999999999999999999963
No 30
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.94 E-value=5.5e-25 Score=220.98 Aligned_cols=234 Identities=15% Similarity=0.150 Sum_probs=150.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHH
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGY 506 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ 506 (691)
+|+|||+||++++...|..+++.| + +|+|+++|+||||.|+.+. ..+++++++++.+++++++.++++++||||||.
T Consensus 2 ~p~vvllHG~~~~~~~w~~~~~~l-~-~~~vi~~D~~G~G~S~~~~-~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~ 78 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQPVGEAL-P-DYPRLYIDLPGHGGSAAIS-VDGFADVSRLLSQTLQSYNILPYWLVGYSLGGR 78 (242)
T ss_pred CCEEEEECCCCCChHHHHHHHHHc-C-CCCEEEecCCCCCCCCCcc-ccCHHHHHHHHHHHHHHcCCCCeEEEEECHHHH
Confidence 678999999999999999999988 3 5999999999999998765 358999999999999999999999999999999
Q ss_pred HHHHHHHhCccc-cceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCC-CccccHHH
Q 005554 507 FVAIVACLWPAV-VKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTR-RERADDWL 584 (691)
Q Consensus 507 ial~~A~~~P~~-V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 584 (691)
+++.+|.++|+. |+++|++++.....+...... .......+... +........+..++... ........
T Consensus 79 va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (242)
T PRK11126 79 IAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQA-RWQNDRQWAQR--------FRQEPLEQVLADWYQQPVFASLNAEQ 149 (242)
T ss_pred HHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHH-HHhhhHHHHHH--------hccCcHHHHHHHHHhcchhhccCccH
Confidence 999999999764 999999987643222110000 00000000000 00000111111111000 00001111
Q ss_pred HHHHHHhcCCcchHHHHHHHh---ccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCCC
Q 005554 585 ISEMLRASYDPGVLVVLESIF---SFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-DAGH 660 (691)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH 660 (691)
...+......... ....... ......+....+.++++|+++|+|++|..+.. +... .+++++++ ++||
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~------~~~~-~~~~~~~i~~~gH 221 (242)
T PRK11126 150 RQQLVAKRSNNNG-AAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQA------LAQQ-LALPLHVIPNAGH 221 (242)
T ss_pred HHHHHHhcccCCH-HHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHHH------HHHH-hcCeEEEeCCCCC
Confidence 1111111110000 0111111 11122344567889999999999999985421 1122 37788877 8999
Q ss_pred CCCccChHHHHHHHHHHHHh
Q 005554 661 CPHDEKPEEVNSIISEWIVT 680 (691)
Q Consensus 661 ~~~~e~pe~v~~~I~~fL~~ 680 (691)
++++|+|+++++.|.+|+++
T Consensus 222 ~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 222 NAHRENPAAFAASLAQILRL 241 (242)
T ss_pred chhhhChHHHHHHHHHHHhh
Confidence 99999999999999999975
No 31
>PRK07581 hypothetical protein; Validated
Probab=99.94 E-value=4.3e-25 Score=233.15 Aligned_cols=270 Identities=13% Similarity=0.056 Sum_probs=164.5
Q ss_pred EEcCeEEEEEEeCCC----CCeEEEEcCCCCChHHHHHHH---HHHhcCCCEEEEeCCCCCcCCCCCCc---CCCHHH--
Q 005554 412 RWNGYQIQYTVAGKE----GPAILLVHGFGAFLEHYRDNI---YDIADGGNRVWAITLLGFGRSEKPNI---VYTELM-- 479 (691)
Q Consensus 412 ~~~g~~i~y~~~g~~----~p~VlliHG~~~~~~~~~~~~---~~L~~~G~~Vi~~D~~G~G~S~~~~~---~~s~~~-- 479 (691)
+.+|.+|+|...|+. .|+||++||++++...|..++ ..|...+|+||++|+||||.|+.+.. .++++.
T Consensus 22 ~~~~~~l~y~~~G~~~~~~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~ 101 (339)
T PRK07581 22 TLPDARLAYKTYGTLNAAKDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFP 101 (339)
T ss_pred CcCCceEEEEecCccCCCCCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCC
Confidence 457899999999852 356777777777766665443 36665679999999999999986532 344432
Q ss_pred ---HHHHHHH----HHHHhCCcC-EEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhh--hhhhh--hhcC
Q 005554 480 ---WSELLRD----FTVEVVGEP-VHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFL--QFSNE--RQAS 547 (691)
Q Consensus 480 ---~a~dl~~----ll~~l~~~~-v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~--~~~~~--~~~~ 547 (691)
+++++.+ +++++++++ ++||||||||++|+.+|.+||++|+++|++++.....+..... ..... ....
T Consensus 102 ~~~~~~~~~~~~~~l~~~lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~ 181 (339)
T PRK07581 102 HVTIYDNVRAQHRLLTEKFGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPA 181 (339)
T ss_pred ceeHHHHHHHHHHHHHHHhCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 4566654 778899999 4799999999999999999999999999998764322110000 00000 0000
Q ss_pred ----Chh----hhhhHHHHHHH-HhhHHHHHHhh-cCCCCccccHHHHHHHHHh----cCCcchHHHHHHHhccc--c--
Q 005554 548 ----GPI----RLGAQLLLFYL-RLNISNFVKQC-YPTRRERADDWLISEMLRA----SYDPGVLVVLESIFSFK--L-- 609 (691)
Q Consensus 548 ----~~~----~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~-- 609 (691)
+.. ........... ......++... +.................. .........+....... .
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 261 (339)
T PRK07581 182 FNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNP 261 (339)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCc
Confidence 000 00000000000 00011111110 0000000001111111111 11112222222222111 1
Q ss_pred --CcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-C-CCCCCCccChHHHHHHHHHHHHhhh
Q 005554 610 --SLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-D-AGHCPHDEKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 610 --~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~-~GH~~~~e~pe~v~~~I~~fL~~~~ 682 (691)
..+....+.+|++|||+|+|++|.++|++. .+.+.+.+++++++++ + +||++++|+|++++..|.+||++..
T Consensus 262 ~~~~d~~~~L~~I~~PtLvI~G~~D~~~p~~~-~~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~~ 337 (339)
T PRK07581 262 AYGGDLAAALGSITAKTFVMPISTDLYFPPED-CEAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKELL 337 (339)
T ss_pred ccCCCHHHHHhcCCCCEEEEEeCCCCCCCHHH-HHHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHHH
Confidence 124566788999999999999999999884 5566778899998888 6 8999999999999999999999864
No 32
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.94 E-value=2.7e-24 Score=211.60 Aligned_cols=275 Identities=23% Similarity=0.293 Sum_probs=172.6
Q ss_pred CceEEEEEEEc-CeEEEEEEeC---CCCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc----CC
Q 005554 404 GVYSTRIWRWN-GYQIQYTVAG---KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI----VY 475 (691)
Q Consensus 404 ~~~~~~~~~~~-g~~i~y~~~g---~~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~----~~ 475 (691)
.++..+++.+. +..+...... ..+.++|||||+|++...|...++.|++ .++|+++|++|+|.|+.|.- ..
T Consensus 63 v~~~~~~v~i~~~~~iw~~~~~~~~~~~~plVliHGyGAg~g~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~~d~~~ 141 (365)
T KOG4409|consen 63 VPYSKKYVRIPNGIEIWTITVSNESANKTPLVLIHGYGAGLGLFFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFSIDPTT 141 (365)
T ss_pred CCcceeeeecCCCceeEEEeecccccCCCcEEEEeccchhHHHHHHhhhhhhh-cCceEEecccCCCCCCCCCCCCCccc
Confidence 34444555553 3344433332 2378999999999999999999999998 59999999999999998763 23
Q ss_pred CHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCCh------
Q 005554 476 TELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGP------ 549 (691)
Q Consensus 476 s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~------ 549 (691)
....+++-|+++....++.+.+|+||||||+++..||.+||++|+.|||++|.+........... ......|.
T Consensus 142 ~e~~fvesiE~WR~~~~L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~-~~~~~~w~~~~~~~ 220 (365)
T KOG4409|consen 142 AEKEFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEF-TKPPPEWYKALFLV 220 (365)
T ss_pred chHHHHHHHHHHHHHcCCcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhh-cCCChHHHhhhhhh
Confidence 35578999999999999999999999999999999999999999999999998765422100000 00000011
Q ss_pred -hhhhhHHHHHHHHh----hHHHHHHhhcCCCCccccHHH-HHHHHHh-cCCcchHHHHHHHhccc--cCcchHhhhcCC
Q 005554 550 -IRLGAQLLLFYLRL----NISNFVKQCYPTRRERADDWL-ISEMLRA-SYDPGVLVVLESIFSFK--LSLPLNYLLEGF 620 (691)
Q Consensus 550 -~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~l~~i 620 (691)
..+........... ....+-...+...+....++. .+..... ...+.....+..++... ...++.+.+..+
T Consensus 221 ~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l 300 (365)
T KOG4409|consen 221 ATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLREL 300 (365)
T ss_pred hhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhh
Confidence 00000000111111 111111111111122222333 2222222 22233333333333322 234555666666
Q ss_pred C--CcEEEEEeCCCCCCChhHHHHHHHH-hCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhh
Q 005554 621 K--EKVLIIQGIKDPISDSKSKVAMFKE-HCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 621 ~--~PvLiI~G~~D~~vp~~~~~~~~~~-~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
+ +|+++|+|++|-+-... ..+.... ....++.+++ ++||++.+++|+.|++.|.++++..
T Consensus 301 ~~~~pv~fiyG~~dWmD~~~-g~~~~~~~~~~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 301 KKDVPVTFIYGDRDWMDKNA-GLEVTKSLMKEYVEIIIVPGAGHHVYLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred ccCCCEEEEecCcccccchh-HHHHHHHhhcccceEEEecCCCceeecCCHHHHHHHHHHHHhcc
Confidence 6 99999999999765443 3333333 2344676666 9999999999999999999999864
No 33
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.94 E-value=5.2e-25 Score=233.29 Aligned_cols=267 Identities=14% Similarity=0.141 Sum_probs=167.8
Q ss_pred EEcCeEEEEEEeCC----CCCeEEEEcCCCCChH-----------HHHHHH---HHHhcCCCEEEEeCCCC--CcCCCCC
Q 005554 412 RWNGYQIQYTVAGK----EGPAILLVHGFGAFLE-----------HYRDNI---YDIADGGNRVWAITLLG--FGRSEKP 471 (691)
Q Consensus 412 ~~~g~~i~y~~~g~----~~p~VlliHG~~~~~~-----------~~~~~~---~~L~~~G~~Vi~~D~~G--~G~S~~~ 471 (691)
.++|.+|+|..+|+ ++++|||+||++++.. .|..++ ..|...+|+||++|+|| ||.|...
T Consensus 12 ~~~~~~~~y~~~g~~~~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~ 91 (351)
T TIGR01392 12 VLSDVRVAYETYGTLNAERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPS 91 (351)
T ss_pred ccCCceEEEEeccccCCCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCC
Confidence 46889999999984 2679999999999763 477775 25655679999999999 5655421
Q ss_pred ----C--------cCCCHHHHHHHHHHHHHHhCCcC-EEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCch-hh
Q 005554 472 ----N--------IVYTELMWSELLRDFTVEVVGEP-VHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEY-SF 537 (691)
Q Consensus 472 ----~--------~~~s~~~~a~dl~~ll~~l~~~~-v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~-~~ 537 (691)
. ..++++++++++.+++++++.++ ++++||||||++++.+|.++|++|+++|++++........ ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 171 (351)
T TIGR01392 92 SINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWCIAF 171 (351)
T ss_pred CCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHHHHH
Confidence 1 24789999999999999999998 9999999999999999999999999999999875432211 00
Q ss_pred hhhh-hhhh--cCCh-----h---h-hhhHHHHHH--HHhhHHHHHHhhcCCCC-cc-----------ccHHHH----HH
Q 005554 538 LQFS-NERQ--ASGP-----I---R-LGAQLLLFY--LRLNISNFVKQCYPTRR-ER-----------ADDWLI----SE 587 (691)
Q Consensus 538 ~~~~-~~~~--~~~~-----~---~-~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~-----------~~~~~~----~~ 587 (691)
.... .... ..+. . . ......... ........+...+.... .. ...... ..
T Consensus 172 ~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (351)
T TIGR01392 172 NEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQGDK 251 (351)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHHHHH
Confidence 0000 0000 0000 0 0 000000000 00000111111121110 00 001111 11
Q ss_pred HHHhcCCcchHHHHHHHhccccC---cchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEE-----Ee-CC
Q 005554 588 MLRASYDPGVLVVLESIFSFKLS---LPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIR-----EL-DA 658 (691)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~-----~~-~~ 658 (691)
+...............+...... .+....+++|++|+|+|+|++|.++|++. .+.+.+.+++.+++ ++ ++
T Consensus 252 ~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~-~~~~a~~i~~~~~~v~~~~i~~~~ 330 (351)
T TIGR01392 252 FVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAE-SRELAKALPAAGLRVTYVEIESPY 330 (351)
T ss_pred HHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHH-HHHHHHHHhhcCCceEEEEeCCCC
Confidence 11111111111222222222111 24567889999999999999999999984 56567777777654 45 79
Q ss_pred CCCCCccChHHHHHHHHHHHH
Q 005554 659 GHCPHDEKPEEVNSIISEWIV 679 (691)
Q Consensus 659 GH~~~~e~pe~v~~~I~~fL~ 679 (691)
||++++|+|++|++.|.+||+
T Consensus 331 GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 331 GHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred CcchhhcCHHHHHHHHHHHhC
Confidence 999999999999999999984
No 34
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.93 E-value=1.6e-24 Score=216.93 Aligned_cols=240 Identities=19% Similarity=0.214 Sum_probs=152.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHH
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGY 506 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ 506 (691)
.|+|||+||++++...|..+++.|.+ +|+|+++|+||||.|... ..++++++++++.+.+ .++++++||||||.
T Consensus 4 ~~~iv~~HG~~~~~~~~~~~~~~l~~-~~~vi~~d~~G~G~s~~~-~~~~~~~~~~~~~~~~----~~~~~lvG~S~Gg~ 77 (245)
T TIGR01738 4 NVHLVLIHGWGMNAEVFRCLDEELSA-HFTLHLVDLPGHGRSRGF-GPLSLADAAEAIAAQA----PDPAIWLGWSLGGL 77 (245)
T ss_pred CceEEEEcCCCCchhhHHHHHHhhcc-CeEEEEecCCcCccCCCC-CCcCHHHHHHHHHHhC----CCCeEEEEEcHHHH
Confidence 48999999999999999999999986 599999999999998754 3567888887776543 36899999999999
Q ss_pred HHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHh-hcCCCCccccHHHH
Q 005554 507 FVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQ-CYPTRRERADDWLI 585 (691)
Q Consensus 507 ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 585 (691)
+++.+|.++|++|+++|++++............... ......+....... .......++.. .+............
T Consensus 78 ~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (245)
T TIGR01738 78 VALHIAATHPDRVRALVTVASSPCFSAREDWPEGIK---PDVLTGFQQQLSDD-YQRTIERFLALQTLGTPTARQDARAL 153 (245)
T ss_pred HHHHHHHHCHHhhheeeEecCCcccccCCcccccCC---HHHHHHHHHHhhhh-HHHHHHHHHHHHHhcCCccchHHHHH
Confidence 999999999999999999988643221100000000 00000000000000 00011111110 11111000000011
Q ss_pred HHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCCCCCCc
Q 005554 586 SEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-DAGHCPHD 664 (691)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~~~~ 664 (691)
............. .+..........+....+.++++|+++|+|++|.+++++. .+.+.+..++++++++ ++||++++
T Consensus 154 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~gH~~~~ 231 (245)
T TIGR01738 154 KQTLLARPTPNVQ-VLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKV-VPYLDKLAPHSELYIFAKAAHAPFL 231 (245)
T ss_pred HHHhhccCCCCHH-HHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHH-HHHHHHhCCCCeEEEeCCCCCCccc
Confidence 1111111111111 1111111112234455678999999999999999999874 5566777899999888 89999999
Q ss_pred cChHHHHHHHHHHH
Q 005554 665 EKPEEVNSIISEWI 678 (691)
Q Consensus 665 e~pe~v~~~I~~fL 678 (691)
|+|+++++.|.+|+
T Consensus 232 e~p~~~~~~i~~fi 245 (245)
T TIGR01738 232 SHAEAFCALLVAFK 245 (245)
T ss_pred cCHHHHHHHHHhhC
Confidence 99999999999985
No 35
>PRK10749 lysophospholipase L2; Provisional
Probab=99.93 E-value=1e-24 Score=228.86 Aligned_cols=262 Identities=13% Similarity=0.035 Sum_probs=167.5
Q ss_pred EEEEEEEcCeEEEEEEeCC--CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc------CCCHH
Q 005554 407 STRIWRWNGYQIQYTVAGK--EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI------VYTEL 478 (691)
Q Consensus 407 ~~~~~~~~g~~i~y~~~g~--~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~------~~s~~ 478 (691)
+.+++..+|.+++|..+++ ++++||++||++++...|..++..|.+.||+|+++|+||||.|+.+.. ..+++
T Consensus 32 ~~~~~~~~g~~l~~~~~~~~~~~~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~ 111 (330)
T PRK10749 32 EAEFTGVDDIPIRFVRFRAPHHDRVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGHVERFN 111 (330)
T ss_pred ceEEEcCCCCEEEEEEccCCCCCcEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCccccHH
Confidence 3567778999999999874 367999999999999999999999998999999999999999976421 25889
Q ss_pred HHHHHHHHHHHHh----CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhh
Q 005554 479 MWSELLRDFTVEV----VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGA 554 (691)
Q Consensus 479 ~~a~dl~~ll~~l----~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (691)
++++|+..+++.+ +..+++++||||||.+++.+|.++|+.|+++|+++|............ ......
T Consensus 112 ~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~---------~~~~~~ 182 (330)
T PRK10749 112 DYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWM---------ARRILN 182 (330)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHH---------HHHHHH
Confidence 9999999999886 567899999999999999999999999999999998643211100000 000000
Q ss_pred HHHHHHHHhhHHH---HHHhhcCC--CCc--cccH----HHHHHHHHhcCC---cchHHHHHHHhccccCcchHhhhcCC
Q 005554 555 QLLLFYLRLNISN---FVKQCYPT--RRE--RADD----WLISEMLRASYD---PGVLVVLESIFSFKLSLPLNYLLEGF 620 (691)
Q Consensus 555 ~~~~~~~~~~~~~---~~~~~~~~--~~~--~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~i 620 (691)
..... ...... ....+... ... .... ...+.+...... ............. .......+.++
T Consensus 183 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i 258 (330)
T PRK10749 183 -WAEGH-PRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILA--GEQVLAGAGDI 258 (330)
T ss_pred -HHHHh-cCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHH--HHHHHhhccCC
Confidence 00000 000000 00000000 000 0001 111111111100 0011111111100 00122346789
Q ss_pred CCcEEEEEeCCCCCCChhHHHHHHHHh------CCCcEEEEe-CCCCCCCccCh---HHHHHHHHHHHHhh
Q 005554 621 KEKVLIIQGIKDPISDSKSKVAMFKEH------CAGIVIREL-DAGHCPHDEKP---EEVNSIISEWIVTI 681 (691)
Q Consensus 621 ~~PvLiI~G~~D~~vp~~~~~~~~~~~------~~~~~~~~~-~~GH~~~~e~p---e~v~~~I~~fL~~~ 681 (691)
++|+|+|+|++|.+++++......+.. .++++++++ ++||.++.|.+ +.+.+.|.+||++.
T Consensus 259 ~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 259 TTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred CCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 999999999999999998544443322 145577777 99999999885 67889999999874
No 36
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.93 E-value=1.8e-24 Score=220.29 Aligned_cols=259 Identities=15% Similarity=0.137 Sum_probs=164.8
Q ss_pred EcCeEEEEEEeCCCCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC-cCCCHHHHHHHHHHHHHHh
Q 005554 413 WNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEV 491 (691)
Q Consensus 413 ~~g~~i~y~~~g~~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-~~~s~~~~a~dl~~ll~~l 491 (691)
-+|.+++|...+..+|+|||+||++.+...|.+++..|.+.||+|+++|+||||.|.... ..++++++++++.++++.+
T Consensus 4 ~~~~~~~~~~~~~~~p~vvliHG~~~~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i~~l 83 (273)
T PLN02211 4 ENGEEVTDMKPNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSL 83 (273)
T ss_pred ccccccccccccCCCCeEEEECCCCCCcCcHHHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHHHHHhc
Confidence 468888888865568999999999999999999999998889999999999999886433 3489999999999999998
Q ss_pred C-CcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHH
Q 005554 492 V-GEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVK 570 (691)
Q Consensus 492 ~-~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (691)
. .++++||||||||++++.++.++|++|+++|++++.... ............. .......... .... ...
T Consensus 84 ~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~-~g~~~~~~~~~~~-~~~~~~~~~~-----~~~~--~~~ 154 (273)
T PLN02211 84 PENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLK-LGFQTDEDMKDGV-PDLSEFGDVY-----ELGF--GLG 154 (273)
T ss_pred CCCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCC-CCCCHHHHHhccc-cchhhhccce-----eeee--ccC
Confidence 5 589999999999999999999999999999999874221 1100000000000 0000000000 0000 000
Q ss_pred hhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhc-----cccCcchHhhhcCC-CCcEEEEEeCCCCCCChhHHHHHH
Q 005554 571 QCYPTRRERADDWLISEMLRASYDPGVLVVLESIFS-----FKLSLPLNYLLEGF-KEKVLIIQGIKDPISDSKSKVAMF 644 (691)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~i-~~PvLiI~G~~D~~vp~~~~~~~~ 644 (691)
.................+.................. .............+ ++|+++|.|++|..+|++ .++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~-~~~~m 233 (273)
T PLN02211 155 PDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPE-QQEAM 233 (273)
T ss_pred CCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHH-HHHHH
Confidence 000000000111111111111110000000000000 00000111122345 789999999999999998 56667
Q ss_pred HHhCCCcEEEEeCCCCCCCccChHHHHHHHHHHHHhh
Q 005554 645 KEHCAGIVIRELDAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 645 ~~~~~~~~~~~~~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
.+..+..+++.+++||.+++++|+++++.|.++....
T Consensus 234 ~~~~~~~~~~~l~~gH~p~ls~P~~~~~~i~~~a~~~ 270 (273)
T PLN02211 234 IKRWPPSQVYELESDHSPFFSTPFLLFGLLIKAAASV 270 (273)
T ss_pred HHhCCccEEEEECCCCCccccCHHHHHHHHHHHHHHh
Confidence 7777788888889999999999999999999987654
No 37
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.93 E-value=1.9e-23 Score=223.78 Aligned_cols=266 Identities=20% Similarity=0.227 Sum_probs=161.1
Q ss_pred EEEEEEeC--CCCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCC-CH----HHHHHHHHHHHH
Q 005554 417 QIQYTVAG--KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVY-TE----LMWSELLRDFTV 489 (691)
Q Consensus 417 ~i~y~~~g--~~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~-s~----~~~a~dl~~ll~ 489 (691)
.+.+.... .++|+|||+||++++...|...+..|.+. |+|+++|+||||.|+.+...+ +. +.+++++.++++
T Consensus 93 ~~~~~~~~~~~~~p~vvllHG~~~~~~~~~~~~~~L~~~-~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~ 171 (402)
T PLN02894 93 FINTVTFDSKEDAPTLVMVHGYGASQGFFFRNFDALASR-FRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRK 171 (402)
T ss_pred eEEEEEecCCCCCCEEEEECCCCcchhHHHHHHHHHHhC-CEEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 45544433 24789999999999999999999999874 999999999999998764322 11 235677888888
Q ss_pred HhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhH----------H---
Q 005554 490 EVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQ----------L--- 556 (691)
Q Consensus 490 ~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--- 556 (691)
.++.++++|+||||||.+++.+|.++|++|+++|++++.+..................+...+... .
T Consensus 172 ~l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 251 (402)
T PLN02894 172 AKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRG 251 (402)
T ss_pred HcCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHh
Confidence 889899999999999999999999999999999999987543321110000000000000000000 0
Q ss_pred HHHHHHhhHHHHHHhhcCCC------CccccHHHHHHHHHhcCCc-chHHHHHHHhcc--ccCcchHhhhcCCCCcEEEE
Q 005554 557 LLFYLRLNISNFVKQCYPTR------RERADDWLISEMLRASYDP-GVLVVLESIFSF--KLSLPLNYLLEGFKEKVLII 627 (691)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~i~~PvLiI 627 (691)
...+.......+....+... .......+.+.+....... .....+...... ....+....+.++++|+++|
T Consensus 252 ~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI 331 (402)
T PLN02894 252 LGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFI 331 (402)
T ss_pred ccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEE
Confidence 00000000111111111100 0001111111111111111 111111111111 12344555678899999999
Q ss_pred EeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhhhCC
Q 005554 628 QGIKDPISDSKSKVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTIESK 684 (691)
Q Consensus 628 ~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~~~ 684 (691)
+|++|.+.+.. ..+..+...+.++++++ ++||++++|+|++|++.|.+|++.....
T Consensus 332 ~G~~D~i~~~~-~~~~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~~~~ 388 (402)
T PLN02894 332 YGRHDWMNYEG-AVEARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKYLSP 388 (402)
T ss_pred EeCCCCCCcHH-HHHHHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHhccC
Confidence 99999877643 44544444456777777 9999999999999999999999876654
No 38
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.93 E-value=3.4e-24 Score=228.80 Aligned_cols=272 Identities=13% Similarity=0.093 Sum_probs=168.5
Q ss_pred EEEcCeEEEEEEeCC----CCCeEEEEcCCCCChHH-------------HHHHHH---HHhcCCCEEEEeCCCCC-cCCC
Q 005554 411 WRWNGYQIQYTVAGK----EGPAILLVHGFGAFLEH-------------YRDNIY---DIADGGNRVWAITLLGF-GRSE 469 (691)
Q Consensus 411 ~~~~g~~i~y~~~g~----~~p~VlliHG~~~~~~~-------------~~~~~~---~L~~~G~~Vi~~D~~G~-G~S~ 469 (691)
..++|.+++|..+|. .+|+|||+||++++... |..++. .|...+|+||++|++|+ |.|.
T Consensus 28 ~~~~~~~~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~ 107 (379)
T PRK00175 28 AVLPPVELAYETYGTLNADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGST 107 (379)
T ss_pred CCcCCceEEEEeccccCCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCC
Confidence 355788999999985 26899999999999874 556652 34344799999999983 5453
Q ss_pred CCC--------------cCCCHHHHHHHHHHHHHHhCCcC-EEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCc
Q 005554 470 KPN--------------IVYTELMWSELLRDFTVEVVGEP-VHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPE 534 (691)
Q Consensus 470 ~~~--------------~~~s~~~~a~dl~~ll~~l~~~~-v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~ 534 (691)
.+. ..++++++++++.++++++++++ ++++||||||++++.+|.++|++|+++|++++.......
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 187 (379)
T PRK00175 108 GPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQ 187 (379)
T ss_pred CCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHH
Confidence 321 15899999999999999999999 589999999999999999999999999999987543221
Q ss_pred hh-hhhh-hhhhh--cCCh---------hhhhhHHHHHH---HHhhHHHHHHhhcCCCC-c----------cccHHHHH-
Q 005554 535 YS-FLQF-SNERQ--ASGP---------IRLGAQLLLFY---LRLNISNFVKQCYPTRR-E----------RADDWLIS- 586 (691)
Q Consensus 535 ~~-~~~~-~~~~~--~~~~---------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~----------~~~~~~~~- 586 (691)
.. .... ..... ..+. ........... ........+...+.... . ........
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (379)
T PRK00175 188 NIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRY 267 (379)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHH
Confidence 00 0000 00000 0000 00000000000 00000001111111100 0 00011110
Q ss_pred ---HHHHhcCCcchHHHHHHHhccccC----cchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCc----EEEE
Q 005554 587 ---EMLRASYDPGVLVVLESIFSFKLS----LPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGI----VIRE 655 (691)
Q Consensus 587 ---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~----~~~~ 655 (691)
.+...................... .+....+.+|++|+|+|+|++|.++|++. .+.+.+.++++ ++++
T Consensus 268 ~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~-~~~la~~i~~a~~~~~l~~ 346 (379)
T PRK00175 268 QGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPAR-SREIVDALLAAGADVSYAE 346 (379)
T ss_pred HHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHH-HHHHHHHHHhcCCCeEEEE
Confidence 111111111122222222222111 23567889999999999999999999984 55566666665 5554
Q ss_pred -e-CCCCCCCccChHHHHHHHHHHHHhhhC
Q 005554 656 -L-DAGHCPHDEKPEEVNSIISEWIVTIES 683 (691)
Q Consensus 656 -~-~~GH~~~~e~pe~v~~~I~~fL~~~~~ 683 (691)
+ ++||++++|+|+++++.|.+||++...
T Consensus 347 i~~~~GH~~~le~p~~~~~~L~~FL~~~~~ 376 (379)
T PRK00175 347 IDSPYGHDAFLLDDPRYGRLVRAFLERAAR 376 (379)
T ss_pred eCCCCCchhHhcCHHHHHHHHHHHHHhhhh
Confidence 4 799999999999999999999998653
No 39
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.93 E-value=9.1e-25 Score=225.29 Aligned_cols=256 Identities=30% Similarity=0.345 Sum_probs=159.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhcC-CCEEEEeCCCCCc-CCCCCC-cCCCHHHHHHHHHHHHHHhCCcCEEEEEeC
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIADG-GNRVWAITLLGFG-RSEKPN-IVYTELMWSELLRDFTVEVVGEPVHLIGNS 502 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~~-G~~Vi~~D~~G~G-~S~~~~-~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS 502 (691)
.+++||++|||+++...|+.++..|.+. |++|+++|++|+| .|..+. ..|+..++++.+..++......+++++|||
T Consensus 57 ~~~pvlllHGF~~~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~~~~~~~lvghS 136 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEVFVEPVSLVGHS 136 (326)
T ss_pred CCCcEEEeccccCCcccHhhhccccccccceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhhcCcceEEEEeC
Confidence 4889999999999999999999999876 5999999999999 444444 359999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCccccceEE---EecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcC---CC
Q 005554 503 IGGYFVAIVACLWPAVVKSVV---LINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYP---TR 576 (691)
Q Consensus 503 ~GG~ial~~A~~~P~~V~~lV---ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 576 (691)
+||.+|+.+|+.+|+.|+++| ++++.....+...................................+..... ..
T Consensus 137 ~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 216 (326)
T KOG1454|consen 137 LGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEGLLRCLKVVYTD 216 (326)
T ss_pred cHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHhhhcceeeeccc
Confidence 999999999999999999999 555554332221100000000000000000000000000000000000000 00
Q ss_pred CccccHHHHHHHHHhcCCcchHHHHHHHhccccC--cchHhhhcCCC-CcEEEEEeCCCCCCChhHHHHHHHHhCCCcEE
Q 005554 577 RERADDWLISEMLRASYDPGVLVVLESIFSFKLS--LPLNYLLEGFK-EKVLIIQGIKDPISDSKSKVAMFKEHCAGIVI 653 (691)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~i~-~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~ 653 (691)
.....+....-................++..... ......++++. +|+|+|+|++|.++|.+.... +.+..|++++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~-~~~~~pn~~~ 295 (326)
T KOG1454|consen 217 PSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEE-LKKKLPNAEL 295 (326)
T ss_pred cccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHH-HHhhCCCceE
Confidence 0111111111000000000000000011111111 22333556666 999999999999999995444 4554599999
Q ss_pred EEe-CCCCCCCccChHHHHHHHHHHHHhhh
Q 005554 654 REL-DAGHCPHDEKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 654 ~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~ 682 (691)
+++ ++||++++|.|++++..|..|+....
T Consensus 296 ~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 296 VEIPGAGHLPHLERPEEVAALLRSFIARLR 325 (326)
T ss_pred EEeCCCCcccccCCHHHHHHHHHHHHHHhc
Confidence 999 89999999999999999999998753
No 40
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.93 E-value=3.7e-24 Score=225.27 Aligned_cols=261 Identities=18% Similarity=0.196 Sum_probs=165.6
Q ss_pred EEEEEcCeEEEEEEeCCC-----CCeEEEEcCCCCCh-HHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc-CCCHHHHH
Q 005554 409 RIWRWNGYQIQYTVAGKE-----GPAILLVHGFGAFL-EHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWS 481 (691)
Q Consensus 409 ~~~~~~g~~i~y~~~g~~-----~p~VlliHG~~~~~-~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~-~~s~~~~a 481 (691)
.+...+|.+|+|..+++. +++|||+||++.+. ..|..++..|.++||+|+++|+||||.|+.+.. ..+++.++
T Consensus 36 ~~~~~dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~ 115 (330)
T PLN02298 36 FFTSPRGLSLFTRSWLPSSSSPPRALIFMVHGYGNDISWTFQSTAIFLAQMGFACFALDLEGHGRSEGLRAYVPNVDLVV 115 (330)
T ss_pred eEEcCCCCEEEEEEEecCCCCCCceEEEEEcCCCCCcceehhHHHHHHHhCCCEEEEecCCCCCCCCCccccCCCHHHHH
Confidence 455569999999876532 45699999998664 356677888998899999999999999975433 45888999
Q ss_pred HHHHHHHHHhCC------cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhH
Q 005554 482 ELLRDFTVEVVG------EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQ 555 (691)
Q Consensus 482 ~dl~~ll~~l~~------~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
+|+.++++.+.. .+++|+||||||.+++.++.++|++|+++|++++......... ..+. . ..
T Consensus 116 ~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~---------~~~~--~-~~ 183 (330)
T PLN02298 116 EDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIR---------PPWP--I-PQ 183 (330)
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccC---------CchH--H-HH
Confidence 999999988753 3799999999999999999999999999999998643221100 0000 0 00
Q ss_pred HHHHHHHhhHHHHHHhhc-CCCCccc----cHHHHHHHHHh---cCC-cchHHHHHHHhccccCcchHhhhcCCCCcEEE
Q 005554 556 LLLFYLRLNISNFVKQCY-PTRRERA----DDWLISEMLRA---SYD-PGVLVVLESIFSFKLSLPLNYLLEGFKEKVLI 626 (691)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLi 626 (691)
... ....+..... ....... .......+... ... ............. .......+..+++|+|+
T Consensus 184 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~i~~PvLi 256 (330)
T PLN02298 184 ILT-----FVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRV--TDYLGKKLKDVSIPFIV 256 (330)
T ss_pred HHH-----HHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHH--HHHHHHhhhhcCCCEEE
Confidence 000 0000000000 0000000 00000000000 000 0000001111110 00123456789999999
Q ss_pred EEeCCCCCCChhHHHHHHHHhC-CCcEEEEe-CCCCCCCccChH----HHHHHHHHHHHhhhCCCCCC
Q 005554 627 IQGIKDPISDSKSKVAMFKEHC-AGIVIREL-DAGHCPHDEKPE----EVNSIISEWIVTIESKVPAE 688 (691)
Q Consensus 627 I~G~~D~~vp~~~~~~~~~~~~-~~~~~~~~-~~GH~~~~e~pe----~v~~~I~~fL~~~~~~~~~~ 688 (691)
|+|++|.++|++...+++.... ++++++++ ++||.+++++|+ ++.+.|.+||++......++
T Consensus 257 i~G~~D~ivp~~~~~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~~~~~ 324 (330)
T PLN02298 257 LHGSADVVTDPDVSRALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTGKATP 324 (330)
T ss_pred EecCCCCCCCHHHHHHHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999986655555543 57888887 899999998875 57788999999876544443
No 41
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.93 E-value=5.1e-24 Score=218.99 Aligned_cols=262 Identities=19% Similarity=0.177 Sum_probs=163.1
Q ss_pred EEEEEcCeEEEEEEeCCC--CCeEEEEcCCCCCh-HHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc---CCCHHHHHH
Q 005554 409 RIWRWNGYQIQYTVAGKE--GPAILLVHGFGAFL-EHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI---VYTELMWSE 482 (691)
Q Consensus 409 ~~~~~~g~~i~y~~~g~~--~p~VlliHG~~~~~-~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~---~~s~~~~a~ 482 (691)
++++++|.++.|...+.+ +++|||+||++++. ..|..+...|.+.||+|+++|+||||.|..+.. .++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~ 84 (288)
T TIGR01250 5 GIITVDGGYHLFTKTGGEGEKIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVD 84 (288)
T ss_pred ceecCCCCeEEEEeccCCCCCCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHH
Confidence 356778888888887643 68999999986554 455556666666689999999999999987542 378999999
Q ss_pred HHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHH--
Q 005554 483 LLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFY-- 560 (691)
Q Consensus 483 dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 560 (691)
++.+++++++.++++++||||||.+++.+|..+|++|+++|++++............ ..................
T Consensus 85 ~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 161 (288)
T TIGR01250 85 ELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELN---RLRKELPPEVRAAIKRCEAS 161 (288)
T ss_pred HHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHH---HHHhhcChhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999987542211100000 000000000000000000
Q ss_pred ---HHhhHHHHHHhhcC--CCCccccHHHHHHHHHhcCCcchHHHHHHHh--------ccccCcchHhhhcCCCCcEEEE
Q 005554 561 ---LRLNISNFVKQCYP--TRRERADDWLISEMLRASYDPGVLVVLESIF--------SFKLSLPLNYLLEGFKEKVLII 627 (691)
Q Consensus 561 ---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~i~~PvLiI 627 (691)
........+..... .................. . ......+. ......+....+.++++|++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii 237 (288)
T TIGR01250 162 GDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGM-N---TNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLT 237 (288)
T ss_pred cCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhcc-C---HHHHhcccCCccccccccccccCHHHHhhccCCCEEEE
Confidence 00000000000000 000000000000000000 0 00000000 0011223445678899999999
Q ss_pred EeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHH
Q 005554 628 QGIKDPISDSKSKVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIV 679 (691)
Q Consensus 628 ~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~ 679 (691)
+|++|.+ +++ ..+.+.+..++.+++++ ++||++++|+|+++++.|.+||+
T Consensus 238 ~G~~D~~-~~~-~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 238 VGEFDTM-TPE-AAREMQELIAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred ecCCCcc-CHH-HHHHHHHhccCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 9999985 555 34566777788888887 89999999999999999999984
No 42
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.92 E-value=2.2e-24 Score=212.92 Aligned_cols=225 Identities=27% Similarity=0.310 Sum_probs=150.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC--cCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHH
Q 005554 430 ILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYF 507 (691)
Q Consensus 430 VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~--~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~i 507 (691)
|||+||++++...|..+++.|. +||+|+++|+||+|.|+.+. ..++++++++++.+++++++.++++++|||+||.+
T Consensus 1 vv~~hG~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~ 79 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDPLAEALA-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIKKVILVGHSMGGMI 79 (228)
T ss_dssp EEEE-STTTTGGGGHHHHHHHH-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHh-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccccccccccccccccccc
Confidence 7999999999999999999995 68999999999999998865 46899999999999999999999999999999999
Q ss_pred HHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHHHHHH
Q 005554 508 VAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISE 587 (691)
Q Consensus 508 al~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (691)
++.++.++|++|+++|++++......... .................. ........+..... ......
T Consensus 80 a~~~a~~~p~~v~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~ 146 (228)
T PF12697_consen 80 ALRLAARYPDRVKGLVLLSPPPPLPDSPS-----RSFGPSFIRRLLAWRSRS-LRRLASRFFYRWFD-------GDEPED 146 (228)
T ss_dssp HHHHHHHSGGGEEEEEEESESSSHHHHHC-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHT-------HHHHHH
T ss_pred ccccccccccccccceeeccccccccccc-----ccccchhhhhhhhccccc-cccccccccccccc-------cccccc
Confidence 99999999999999999998743211000 000000000000000000 00000011111110 000111
Q ss_pred HHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCCCCCCccC
Q 005554 588 MLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-DAGHCPHDEK 666 (691)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~~~~e~ 666 (691)
.... ............ ....+....+..+++|+++|+|++|.+++.+ ..+.+.+..++++++++ ++||++++|+
T Consensus 147 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 221 (228)
T PF12697_consen 147 LIRS-SRRALAEYLRSN---LWQADLSEALPRIKVPVLVIHGEDDPIVPPE-SAEELADKLPNAELVVIPGAGHFLFLEQ 221 (228)
T ss_dssp HHHH-HHHHHHHHHHHH---HHHHHHHHHHHGSSSEEEEEEETTSSSSHHH-HHHHHHHHSTTEEEEEETTSSSTHHHHS
T ss_pred cccc-cccccccccccc---cccccccccccccCCCeEEeecCCCCCCCHH-HHHHHHHHCCCCEEEEECCCCCccHHHC
Confidence 1100 000001111100 1112334567788999999999999999976 55667777789999888 7999999999
Q ss_pred hHHHHHH
Q 005554 667 PEEVNSI 673 (691)
Q Consensus 667 pe~v~~~ 673 (691)
|++++++
T Consensus 222 p~~~~~a 228 (228)
T PF12697_consen 222 PDEVAEA 228 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999874
No 43
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.92 E-value=3.8e-23 Score=221.53 Aligned_cols=251 Identities=25% Similarity=0.313 Sum_probs=170.6
Q ss_pred EEEEcCeEEEEEEeCCC-CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHH
Q 005554 410 IWRWNGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFT 488 (691)
Q Consensus 410 ~~~~~g~~i~y~~~g~~-~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll 488 (691)
.+.+++.+++|...|++ +++|||+||++++...|..++..|.+. |+|+++|+||||.|.......+++++++++.+++
T Consensus 113 ~~~~~~~~i~~~~~g~~~~~~vl~~HG~~~~~~~~~~~~~~l~~~-~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~ 191 (371)
T PRK14875 113 KARIGGRTVRYLRLGEGDGTPVVLIHGFGGDLNNWLFNHAALAAG-RPVIALDLPGHGASSKAVGAGSLDELAAAVLAFL 191 (371)
T ss_pred cceEcCcEEEEecccCCCCCeEEEECCCCCccchHHHHHHHHhcC-CEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 44567888999888853 789999999999999999999999875 9999999999999976656789999999999999
Q ss_pred HHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHH
Q 005554 489 VEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNF 568 (691)
Q Consensus 489 ~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (691)
+.++..+++++||||||.+++.+|..+|+++.++|++++.......... ... .+.. .........+
T Consensus 192 ~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~--~~~--------~~~~----~~~~~~~~~~ 257 (371)
T PRK14875 192 DALGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGD--YID--------GFVA----AESRRELKPV 257 (371)
T ss_pred HhcCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchh--HHH--------Hhhc----ccchhHHHHH
Confidence 9999899999999999999999999999999999999876432111000 000 0000 0000001111
Q ss_pred HHhhcCCCCccccHHHHHHHHHhcCCcchHHHHH----HHhc-cccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHH
Q 005554 569 VKQCYPTRRERADDWLISEMLRASYDPGVLVVLE----SIFS-FKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAM 643 (691)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~ 643 (691)
+...+. .........................+. ..+. .....+....+.++++|+|+|+|++|.++|++..
T Consensus 258 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~--- 333 (371)
T PRK14875 258 LELLFA-DPALVTRQMVEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHA--- 333 (371)
T ss_pred HHHHhc-ChhhCCHHHHHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHH---
Confidence 111111 111111222222222111111111111 1111 1112234456778999999999999999998643
Q ss_pred HHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHh
Q 005554 644 FKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVT 680 (691)
Q Consensus 644 ~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~ 680 (691)
....++.++.++ ++||++++++|+++++.|.+||++
T Consensus 334 -~~l~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 334 -QGLPDGVAVHVLPGAGHMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred -hhccCCCeEEEeCCCCCChhhhCHHHHHHHHHHHhcc
Confidence 233456788777 799999999999999999999975
No 44
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.91 E-value=4e-23 Score=207.13 Aligned_cols=241 Identities=18% Similarity=0.209 Sum_probs=156.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC--cCCCHHHHHHH-HHHHHHHhCCcCEEEEEeCh
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSEL-LRDFTVEVVGEPVHLIGNSI 503 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~--~~~s~~~~a~d-l~~ll~~l~~~~v~lvGhS~ 503 (691)
+|+|||+||++++...|.+++..|. .||+|+++|+||+|.|+.+. ..+++++++++ +..+++.++.++++++||||
T Consensus 1 ~~~vv~~hG~~~~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~ 79 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQALIELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQLGIEPFFLVGYSM 79 (251)
T ss_pred CCEEEEEcCCCCchhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 4799999999999999999999998 68999999999999998754 35788889988 78888888889999999999
Q ss_pred hHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcC----CCCcc
Q 005554 504 GGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYP----TRRER 579 (691)
Q Consensus 504 GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 579 (691)
||.+++.+|.++|+.|+++|++++............. ......+. ..........+...+.. .....
T Consensus 80 Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 80 GGRIALYYALQYPERVQGLILESGSPGLATEEERAAR-RQNDEQLA--------QRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred HHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhh-hhcchhhh--------hHHHhcCccHHHHHHhcCceeeeccc
Confidence 9999999999999999999999886432211100000 00000000 00000001111111110 00000
Q ss_pred ccHHHHHHHHHhcCCcchHHHHHHHhc--cccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-
Q 005554 580 ADDWLISEMLRASYDPGVLVVLESIFS--FKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL- 656 (691)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~- 656 (691)
........+...............+.. .....+....+..+++|+++|+|++|..++ + ..+.+.+..++.+++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~-~~~~~~~~~~~~~~~~~~ 228 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-Q-IAKEMQKLLPNLTLVIIA 228 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-H-HHHHHHhcCCCCcEEEEc
Confidence 111111111111111111111111111 111123334567899999999999998764 3 34556777788888888
Q ss_pred CCCCCCCccChHHHHHHHHHHHH
Q 005554 657 DAGHCPHDEKPEEVNSIISEWIV 679 (691)
Q Consensus 657 ~~GH~~~~e~pe~v~~~I~~fL~ 679 (691)
++||++++|+|+++++.|.+||+
T Consensus 229 ~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 229 NAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred CCCCCcCccChHHHHHHHHHHhC
Confidence 78999999999999999999984
No 45
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.90 E-value=2.2e-23 Score=187.19 Aligned_cols=252 Identities=19% Similarity=0.210 Sum_probs=178.2
Q ss_pred CceEEEEEEEcCeEEEEEEeCCCCCeEEEEcCC-CCChHHHHHHHHHHhcC-CCEEEEeCCCCCcCCCCCCcCCCHHHH-
Q 005554 404 GVYSTRIWRWNGYQIQYTVAGKEGPAILLVHGF-GAFLEHYRDNIYDIADG-GNRVWAITLLGFGRSEKPNIVYTELMW- 480 (691)
Q Consensus 404 ~~~~~~~~~~~g~~i~y~~~g~~~p~VlliHG~-~~~~~~~~~~~~~L~~~-G~~Vi~~D~~G~G~S~~~~~~~s~~~~- 480 (691)
..++..-+.++|.+|+|..+|.+...||+++|. |+....|.+.+..|-+. .+.|+++|.||+|.|.+|...+..+.+
T Consensus 19 ~~~te~kv~vng~ql~y~~~G~G~~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ff~ 98 (277)
T KOG2984|consen 19 SDYTESKVHVNGTQLGYCKYGHGPNYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQFFM 98 (277)
T ss_pred chhhhheeeecCceeeeeecCCCCceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcccchHHHHH
Confidence 345556788999999999999767789999996 55677888888777654 389999999999999998877766554
Q ss_pred --HHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHH
Q 005554 481 --SELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLL 558 (691)
Q Consensus 481 --a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (691)
+++..++++.+..+++.++|+|=||..++..|+++++.|.++|+.++...........-........|.......
T Consensus 99 ~Da~~avdLM~aLk~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P--- 175 (277)
T KOG2984|consen 99 KDAEYAVDLMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQP--- 175 (277)
T ss_pred HhHHHHHHHHHHhCCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcch---
Confidence 556667889999999999999999999999999999999999999886443221110000000000111100000
Q ss_pred HHHHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChh
Q 005554 559 FYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSK 638 (691)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~ 638 (691)
+...+. + +.+...+. .+...+..+..+....-....+.+++||+||++|+.|++++..
T Consensus 176 ----------~e~~Yg--~----e~f~~~wa------~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~ 233 (277)
T KOG2984|consen 176 ----------YEDHYG--P----ETFRTQWA------AWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDP 233 (277)
T ss_pred ----------HHHhcC--H----HHHHHHHH------HHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCC
Confidence 000111 0 01111111 1122223333332222245578899999999999999999987
Q ss_pred HHHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhh
Q 005554 639 SKVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
...++....+.+++.+. +++|.+++.-+++|+..+.+||++.
T Consensus 234 -hv~fi~~~~~~a~~~~~peGkHn~hLrya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 234 -HVCFIPVLKSLAKVEIHPEGKHNFHLRYAKEFNKLVLDFLKST 276 (277)
T ss_pred -CccchhhhcccceEEEccCCCcceeeechHHHHHHHHHHHhcc
Confidence 46788888899999998 8999999999999999999999874
No 46
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.90 E-value=4.4e-22 Score=206.95 Aligned_cols=119 Identities=17% Similarity=0.103 Sum_probs=99.9
Q ss_pred EEEE-cCeEEEEEEeCCC-CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC--cCCCHHHHHHHHH
Q 005554 410 IWRW-NGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSELLR 485 (691)
Q Consensus 410 ~~~~-~g~~i~y~~~g~~-~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~--~~~s~~~~a~dl~ 485 (691)
++.. +|.+|+|...|++ +++|||+||++++...+ .+...+...+|+|+++|+||||.|+.+. ..++.+++++++.
T Consensus 8 ~~~~~~~~~l~y~~~g~~~~~~lvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~dl~ 86 (306)
T TIGR01249 8 YLNVSDNHQLYYEQSGNPDGKPVVFLHGGPGSGTDP-GCRRFFDPETYRIVLFDQRGCGKSTPHACLEENTTWDLVADIE 86 (306)
T ss_pred eEEcCCCcEEEEEECcCCCCCEEEEECCCCCCCCCH-HHHhccCccCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHH
Confidence 4444 5789999998853 78999999987765443 3444555567999999999999998654 2467889999999
Q ss_pred HHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCC
Q 005554 486 DFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529 (691)
Q Consensus 486 ~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~ 529 (691)
.++++++.++++++||||||.+++.++.++|++|+++|++++..
T Consensus 87 ~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~ 130 (306)
T TIGR01249 87 KLREKLGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFL 130 (306)
T ss_pred HHHHHcCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeecccc
Confidence 99999999999999999999999999999999999999998764
No 47
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.90 E-value=2e-22 Score=205.92 Aligned_cols=268 Identities=20% Similarity=0.226 Sum_probs=175.4
Q ss_pred eEEEEEEEcCeEEEEEEeCCCC---CeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCC-CCCc-CCCHHHH
Q 005554 406 YSTRIWRWNGYQIQYTVAGKEG---PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE-KPNI-VYTELMW 480 (691)
Q Consensus 406 ~~~~~~~~~g~~i~y~~~g~~~---p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~-~~~~-~~s~~~~ 480 (691)
.+..+...+|..++|..+.... .+||++||++.+..-|..++..|...||.|+++|+||||.|. ...+ .-++.++
T Consensus 10 ~~~~~~~~d~~~~~~~~~~~~~~~~g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg~~~~f~~~ 89 (298)
T COG2267 10 TEGYFTGADGTRLRYRTWAAPEPPKGVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRGHGRSPRGQRGHVDSFADY 89 (298)
T ss_pred ccceeecCCCceEEEEeecCCCCCCcEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCcCCchhHHHH
Confidence 3456788899999999887542 589999999999999999999999999999999999999997 4333 3348899
Q ss_pred HHHHHHHHHHhC----CcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHH
Q 005554 481 SELLRDFTVEVV----GEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQL 556 (691)
Q Consensus 481 a~dl~~ll~~l~----~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (691)
.+|+..+++... ..+++++||||||.|++.++.+++..|+++||.+|...... .....................
T Consensus 90 ~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~-~~~~~~~~~~~~~~~~~~~p~- 167 (298)
T COG2267 90 VDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGG-AILRLILARLALKLLGRIRPK- 167 (298)
T ss_pred HHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCCh-hHHHHHHHHHhcccccccccc-
Confidence 999999998875 37899999999999999999999999999999999855432 000000000000000000000
Q ss_pred HHHHHHhhHHHHHHhhcCCCCccccHHHHHHHHHhcC----CcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCC
Q 005554 557 LLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASY----DPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKD 632 (691)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D 632 (691)
+.... . ....... ....-+....+.+..... ..........+.... .........+++|+|+++|++|
T Consensus 168 ---~~~~~-~-~~~~~~~-~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~--~~~~~~~~~~~~PvLll~g~~D 239 (298)
T COG2267 168 ---LPVDS-N-LLEGVLT-DDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGR--VPALRDAPAIALPVLLLQGGDD 239 (298)
T ss_pred ---cccCc-c-cccCcCc-chhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhc--ccchhccccccCCEEEEecCCC
Confidence 00000 0 0000000 000011122222221110 011111111111111 1223345678999999999999
Q ss_pred CCCC-hhHHHHHHHHhC-CCcEEEEe-CCCCCCCccC-h--HHHHHHHHHHHHhhhC
Q 005554 633 PISD-SKSKVAMFKEHC-AGIVIREL-DAGHCPHDEK-P--EEVNSIISEWIVTIES 683 (691)
Q Consensus 633 ~~vp-~~~~~~~~~~~~-~~~~~~~~-~~GH~~~~e~-p--e~v~~~I~~fL~~~~~ 683 (691)
.+++ .+...++++... ++.+++++ ++.|.++.|. . +++.+.+.+|+.+...
T Consensus 240 ~vv~~~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 240 RVVDNVEGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred ccccCcHHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 9999 676777777665 66778877 9999999986 5 8999999999988654
No 48
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.90 E-value=1.2e-21 Score=208.10 Aligned_cols=255 Identities=19% Similarity=0.222 Sum_probs=162.9
Q ss_pred EEEEcCeEEEEEEeCCC----CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc-CCCHHHHHHHH
Q 005554 410 IWRWNGYQIQYTVAGKE----GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWSELL 484 (691)
Q Consensus 410 ~~~~~g~~i~y~~~g~~----~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~-~~s~~~~a~dl 484 (691)
+..-++..++|..+.+. +++|||+||++++...|..++..|.++||+|+++|+||||.|+.... ..+.+.+.+|+
T Consensus 115 ~~~~~~~~l~~~~~~p~~~~~~~~Vl~lHG~~~~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~Dl 194 (395)
T PLN02652 115 FYGARRNALFCRSWAPAAGEMRGILIIIHGLNEHSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHGYVPSLDYVVEDT 194 (395)
T ss_pred EECCCCCEEEEEEecCCCCCCceEEEEECCchHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCcCHHHHHHHH
Confidence 33446678888887552 46899999999999999999999999999999999999999987543 45788889999
Q ss_pred HHHHHHhCC----cCEEEEEeChhHHHHHHHHHhCcc---ccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHH
Q 005554 485 RDFTVEVVG----EPVHLIGNSIGGYFVAIVACLWPA---VVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLL 557 (691)
Q Consensus 485 ~~ll~~l~~----~~v~lvGhS~GG~ial~~A~~~P~---~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (691)
.++++.+.. .+++++||||||.+++.++. +|+ +|+++|+.+|.....+..... ......
T Consensus 195 ~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~------------~~~~~l- 260 (395)
T PLN02652 195 EAFLEKIRSENPGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIV------------GAVAPI- 260 (395)
T ss_pred HHHHHHHHHhCCCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHH------------HHHHHH-
Confidence 999988753 47999999999999998764 564 799999998864322110000 000000
Q ss_pred HHHHHhhHHHHHHhhcCCC---CccccHHHHHHHHHhcCCcchH--HHHHHHhccccCcchHhhhcCCCCcEEEEEeCCC
Q 005554 558 LFYLRLNISNFVKQCYPTR---RERADDWLISEMLRASYDPGVL--VVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKD 632 (691)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D 632 (691)
.......+........ ...........+.......+.. ......... .......+.++++|+|+|+|++|
T Consensus 261 ---~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~--~~~l~~~L~~I~vPvLIi~G~~D 335 (395)
T PLN02652 261 ---FSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRI--SSYLTRNFKSVTVPFMVLHGTAD 335 (395)
T ss_pred ---HHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHH--HHHHHhhcccCCCCEEEEEeCCC
Confidence 0000000000000000 0000011111110000000000 000011110 01123456789999999999999
Q ss_pred CCCChhHHHHHHHHhC-CCcEEEEe-CCCCCCCcc-ChHHHHHHHHHHHHhhhC
Q 005554 633 PISDSKSKVAMFKEHC-AGIVIREL-DAGHCPHDE-KPEEVNSIISEWIVTIES 683 (691)
Q Consensus 633 ~~vp~~~~~~~~~~~~-~~~~~~~~-~~GH~~~~e-~pe~v~~~I~~fL~~~~~ 683 (691)
.++|++...+++++.. ++.+++++ +++|.++.| +++++.+.|.+||+....
T Consensus 336 ~vvp~~~a~~l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 336 RVTDPLASQDLYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCCHHHHHHHHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999987766666644 35677777 889999887 699999999999997654
No 49
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.90 E-value=8.6e-22 Score=242.11 Aligned_cols=257 Identities=19% Similarity=0.250 Sum_probs=165.7
Q ss_pred EEEEEeCC--CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC--------cCCCHHHHHHHHHHH
Q 005554 418 IQYTVAGK--EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--------IVYTELMWSELLRDF 487 (691)
Q Consensus 418 i~y~~~g~--~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~--------~~~s~~~~a~dl~~l 487 (691)
++|...|. ++++|||+||++++...|..++..|.+. |+|+++|+||||.|..+. ..++++.+++++..+
T Consensus 1360 i~~~~~G~~~~~~~vVllHG~~~s~~~w~~~~~~L~~~-~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~l 1438 (1655)
T PLN02980 1360 IKVHEVGQNAEGSVVLFLHGFLGTGEDWIPIMKAISGS-ARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKL 1438 (1655)
T ss_pred EEEEecCCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-CEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHH
Confidence 45556664 3689999999999999999999999874 999999999999997542 257899999999999
Q ss_pred HHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHH
Q 005554 488 TVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISN 567 (691)
Q Consensus 488 l~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (691)
+++++.++++|+||||||.+++.+|.++|++|+++|++++........ ...... ......... ........
T Consensus 1439 l~~l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~-~~~~~~----~~~~~~~~~----l~~~g~~~ 1509 (1655)
T PLN02980 1439 IEHITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEV-ARKIRS----AKDDSRARM----LIDHGLEI 1509 (1655)
T ss_pred HHHhCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchH-HHHHHh----hhhhHHHHH----HHhhhHHH
Confidence 999999999999999999999999999999999999998753321110 000000 000000000 00001111
Q ss_pred HHHhhcCCC---CccccHHHHHHHHHhcCCcc---hHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHH
Q 005554 568 FVKQCYPTR---RERADDWLISEMLRASYDPG---VLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKV 641 (691)
Q Consensus 568 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~ 641 (691)
++..++... .................... ....+.. .......+....+.++++|+|+|+|++|..++ + ..
T Consensus 1510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~-~a 1586 (1655)
T PLN02980 1510 FLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSD-LSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-Q-IA 1586 (1655)
T ss_pred HHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHH-hhhcccchHHHHHhhCCCCEEEEEECCCCccH-H-HH
Confidence 111111100 00000111111111111111 1111111 11112234456789999999999999999875 3 23
Q ss_pred HHHHHhCCC------------cEEEEe-CCCCCCCccChHHHHHHHHHHHHhhhCCCCC
Q 005554 642 AMFKEHCAG------------IVIREL-DAGHCPHDEKPEEVNSIISEWIVTIESKVPA 687 (691)
Q Consensus 642 ~~~~~~~~~------------~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~~~~~~ 687 (691)
+.+.+.+++ ++++++ ++||++++|+|+++++.|.+||++....+.+
T Consensus 1587 ~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I~~FL~~~~~~~~~ 1645 (1655)
T PLN02980 1587 QKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRALRKFLTRLHNSSTP 1645 (1655)
T ss_pred HHHHHHccccccccccccccceEEEEECCCCCchHHHCHHHHHHHHHHHHHhccccCCC
Confidence 344444444 467777 9999999999999999999999987765443
No 50
>PRK05855 short chain dehydrogenase; Validated
Probab=99.89 E-value=3e-22 Score=227.98 Aligned_cols=267 Identities=17% Similarity=0.108 Sum_probs=163.1
Q ss_pred EEEEEEcCeEEEEEEeCCC-CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC--cCCCHHHHHHHH
Q 005554 408 TRIWRWNGYQIQYTVAGKE-GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSELL 484 (691)
Q Consensus 408 ~~~~~~~g~~i~y~~~g~~-~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~--~~~s~~~~a~dl 484 (691)
..++..+|.+|+|...|++ +|+|||+||++++...|.++++.|. .||+|+++|+||||.|+.+. ..++++++++|+
T Consensus 5 ~~~~~~~g~~l~~~~~g~~~~~~ivllHG~~~~~~~w~~~~~~L~-~~~~Vi~~D~~G~G~S~~~~~~~~~~~~~~a~dl 83 (582)
T PRK05855 5 RTVVSSDGVRLAVYEWGDPDRPTVVLVHGYPDNHEVWDGVAPLLA-DRFRVVAYDVRGAGRSSAPKRTAAYTLARLADDF 83 (582)
T ss_pred EEEEeeCCEEEEEEEcCCCCCCeEEEEcCCCchHHHHHHHHHHhh-cceEEEEecCCCCCCCCCCCcccccCHHHHHHHH
Confidence 4567889999999999864 7899999999999999999999995 57999999999999998643 468999999999
Q ss_pred HHHHHHhCCcC-EEEEEeChhHHHHHHHHHh--CccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHH
Q 005554 485 RDFTVEVVGEP-VHLIGNSIGGYFVAIVACL--WPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYL 561 (691)
Q Consensus 485 ~~ll~~l~~~~-v~lvGhS~GG~ial~~A~~--~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (691)
..++++++..+ ++|+||||||.+++.++.+ .++++..++.++++...... .......................
T Consensus 84 ~~~i~~l~~~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 159 (582)
T PRK05855 84 AAVIDAVSPDRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVG----FWLRSGLRRPTPRRLARALGQLL 159 (582)
T ss_pred HHHHHHhCCCCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHH----HHHhhcccccchhhhhHHHHHHh
Confidence 99999998755 9999999999999988876 24455555555443110000 00000000000000000000000
Q ss_pred HhhHHHHHHhhcCCCCc-----cccHHHHHHHHHhcC---C---------cchHHHHHHHhccccCcchHhhhcCCCCcE
Q 005554 562 RLNISNFVKQCYPTRRE-----RADDWLISEMLRASY---D---------PGVLVVLESIFSFKLSLPLNYLLEGFKEKV 624 (691)
Q Consensus 562 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pv 624 (691)
.......+. .+.... ....... ....... . .........................+++|+
T Consensus 160 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 236 (582)
T PRK05855 160 RSWYIYLFH--LPVLPELLWRLGLGRAWP-RLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRERYTDVPV 236 (582)
T ss_pred hhHHHHHHh--CCCCcHHHhccchhhHHH-HhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccCCccCce
Confidence 000000000 000000 0000000 0000000 0 000000000000000000111244589999
Q ss_pred EEEEeCCCCCCChhHHHHHHHHhCCCcEEEEeCCCCCCCccChHHHHHHHHHHHHhhhC
Q 005554 625 LIIQGIKDPISDSKSKVAMFKEHCAGIVIRELDAGHCPHDEKPEEVNSIISEWIVTIES 683 (691)
Q Consensus 625 LiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~GH~~~~e~pe~v~~~I~~fL~~~~~ 683 (691)
|+|+|++|.+++++. .+.+.+..++..++++++||++++|+|+++++.|.+|++....
T Consensus 237 lii~G~~D~~v~~~~-~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~ 294 (582)
T PRK05855 237 QLIVPTGDPYVRPAL-YDDLSRWVPRLWRREIKAGHWLPMSHPQVLAAAVAEFVDAVEG 294 (582)
T ss_pred EEEEeCCCcccCHHH-hccccccCCcceEEEccCCCcchhhChhHHHHHHHHHHHhccC
Confidence 999999999999874 4556666788888888889999999999999999999998653
No 51
>PLN02511 hydrolase
Probab=99.88 E-value=8.2e-22 Score=210.43 Aligned_cols=244 Identities=14% Similarity=0.148 Sum_probs=147.9
Q ss_pred CCCeEEEEcCCCCChH-HH-HHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCC----cCEEEE
Q 005554 426 EGPAILLVHGFGAFLE-HY-RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG----EPVHLI 499 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~-~~-~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~----~~v~lv 499 (691)
++|+||++||+++++. .| ..++..+.++||+|+++|+||||.|......+....+++|+.+++++++. .+++++
T Consensus 99 ~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~~~~~~~lv 178 (388)
T PLN02511 99 DAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRYPSANLYAA 178 (388)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHCCCCCEEEE
Confidence 4789999999977653 24 56777777889999999999999997644333345667788888877765 589999
Q ss_pred EeChhHHHHHHHHHhCccc--cceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCC
Q 005554 500 GNSIGGYFVAIVACLWPAV--VKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRR 577 (691)
Q Consensus 500 GhS~GG~ial~~A~~~P~~--V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (691)
||||||.+++.++.++|++ |.++|+++++...... . ...... ................... ....+....
T Consensus 179 G~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~--~----~~~~~~-~~~~y~~~~~~~l~~~~~~-~~~~~~~~~ 250 (388)
T PLN02511 179 GWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIA--D----EDFHKG-FNNVYDKALAKALRKIFAK-HALLFEGLG 250 (388)
T ss_pred EechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHH--H----HHHhcc-HHHHHHHHHHHHHHHHHHH-HHHHHhhCC
Confidence 9999999999999999987 8898888765331000 0 000000 0000000000000000000 000000000
Q ss_pred ccccH----------HHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHh
Q 005554 578 ERADD----------WLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEH 647 (691)
Q Consensus 578 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~ 647 (691)
..... .+.+.+........ ....++ ...+....+.+|++|+|+|+|++|+++|.+.......+.
T Consensus 251 ~~~~~~~~~~~~~~~~fd~~~t~~~~gf~---~~~~yy---~~~s~~~~L~~I~vPtLiI~g~dDpi~p~~~~~~~~~~~ 324 (388)
T PLN02511 251 GEYNIPLVANAKTVRDFDDGLTRVSFGFK---SVDAYY---SNSSSSDSIKHVRVPLLCIQAANDPIAPARGIPREDIKA 324 (388)
T ss_pred CccCHHHHHhCCCHHHHHHhhhhhcCCCC---CHHHHH---HHcCchhhhccCCCCeEEEEcCCCCcCCcccCcHhHHhc
Confidence 00000 00000000000000 000010 111233467899999999999999999986433345566
Q ss_pred CCCcEEEEe-CCCCCCCccChHH------HHHHHHHHHHhhhC
Q 005554 648 CAGIVIREL-DAGHCPHDEKPEE------VNSIISEWIVTIES 683 (691)
Q Consensus 648 ~~~~~~~~~-~~GH~~~~e~pe~------v~~~I~~fL~~~~~ 683 (691)
.++++++++ ++||+.++|+|+. +.+.|.+||+....
T Consensus 325 ~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~~ 367 (388)
T PLN02511 325 NPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALEE 367 (388)
T ss_pred CCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 799999888 8999999999876 58999999987654
No 52
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.88 E-value=1.8e-21 Score=188.36 Aligned_cols=256 Identities=19% Similarity=0.214 Sum_probs=170.2
Q ss_pred EEEEEcCeEEEEEEeCCC-----CCeEEEEcCCCCCh-HHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc-CCCHHHHH
Q 005554 409 RIWRWNGYQIQYTVAGKE-----GPAILLVHGFGAFL-EHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWS 481 (691)
Q Consensus 409 ~~~~~~g~~i~y~~~g~~-----~p~VlliHG~~~~~-~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~-~~s~~~~a 481 (691)
.+...+|.++++..+-+. .-.|+++||++... ..|..++..|+..||.|+++|++|||.|++... --+++..+
T Consensus 31 ~~~n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl~~yi~~~d~~v 110 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLHAYVPSFDLVV 110 (313)
T ss_pred eEEcCCCCEeEEEecccCCCCCCceEEEEEcCCcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCCcccCCcHHHHH
Confidence 456668889999888652 23799999998875 788889999999999999999999999997653 44788889
Q ss_pred HHHHHHHHHhC------CcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhH
Q 005554 482 ELLRDFTVEVV------GEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQ 555 (691)
Q Consensus 482 ~dl~~ll~~l~------~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
+|+..+.+... ..+.+|+||||||.|++.++.++|+...|+|+++|.....+..... +.......
T Consensus 111 ~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~---------p~v~~~l~ 181 (313)
T KOG1455|consen 111 DDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPH---------PPVISILT 181 (313)
T ss_pred HHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCC---------cHHHHHHH
Confidence 99998887643 3689999999999999999999999999999999976544332111 11000000
Q ss_pred HHHHHHHhhHHHHHHhh--cCCC--Cc--cccHHHHHHHHHhcCC-cchHHHHHHHhccccCcchHhhhcCCCCcEEEEE
Q 005554 556 LLLFYLRLNISNFVKQC--YPTR--RE--RADDWLISEMLRASYD-PGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQ 628 (691)
Q Consensus 556 ~~~~~~~~~~~~~~~~~--~~~~--~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~ 628 (691)
. +..++..+ .+.. .. -.+.+........... .+....-...--.....++...+.++++|.+++|
T Consensus 182 ~--------l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilH 253 (313)
T KOG1455|consen 182 L--------LSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILH 253 (313)
T ss_pred H--------HHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEe
Confidence 0 00111111 1111 00 0011111111111110 1110111111111123345667889999999999
Q ss_pred eCCCCCCChhHHHHHHHHhC-CCcEEEEe-CCCCCCCc----cChHHHHHHHHHHHHhh
Q 005554 629 GIKDPISDSKSKVAMFKEHC-AGIVIREL-DAGHCPHD----EKPEEVNSIISEWIVTI 681 (691)
Q Consensus 629 G~~D~~vp~~~~~~~~~~~~-~~~~~~~~-~~GH~~~~----e~pe~v~~~I~~fL~~~ 681 (691)
|+.|.++.++...++++... .+.++.+. |.-|.++. |+-+.|...|.+||++.
T Consensus 254 G~dD~VTDp~~Sk~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 254 GTDDKVTDPKVSKELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cCCCcccCcHHHHHHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999999997777776665 56677777 88998875 33577888999999864
No 53
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.87 E-value=2.9e-20 Score=196.70 Aligned_cols=267 Identities=16% Similarity=0.121 Sum_probs=166.2
Q ss_pred EcCeEEEEEEeCCC----CCeEEEEcCCCCChH-------------HHHHHHH---HHhcCCCEEEEeCCCCCcCCCCC-
Q 005554 413 WNGYQIQYTVAGKE----GPAILLVHGFGAFLE-------------HYRDNIY---DIADGGNRVWAITLLGFGRSEKP- 471 (691)
Q Consensus 413 ~~g~~i~y~~~g~~----~p~VlliHG~~~~~~-------------~~~~~~~---~L~~~G~~Vi~~D~~G~G~S~~~- 471 (691)
..+.+|.|..+|.- .++||++|++++++. .|..++- .|-...|.||++|..|-|.|..|
T Consensus 38 l~~~~~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~ 117 (389)
T PRK06765 38 IPDVQMGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPN 117 (389)
T ss_pred cCCceEEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCC
Confidence 36788999999952 579999999988642 2555543 24334599999999987753211
Q ss_pred --------------------CcCCCHHHHHHHHHHHHHHhCCcCEE-EEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 472 --------------------NIVYTELMWSELLRDFTVEVVGEPVH-LIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 472 --------------------~~~~s~~~~a~dl~~ll~~l~~~~v~-lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
...++++++++++..+++++++++++ ++||||||++++.+|.++|++|+++|++++...
T Consensus 118 ~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~ 197 (389)
T PRK06765 118 VITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQ 197 (389)
T ss_pred CCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCC
Confidence 12378999999999999999999986 999999999999999999999999999988654
Q ss_pred CCCch--hhhhhhhh---hhcCC-----------hhhhhhHHHHHHHHhhHHHHHHhhcCCCC-c------------ccc
Q 005554 531 VIPEY--SFLQFSNE---RQASG-----------PIRLGAQLLLFYLRLNISNFVKQCYPTRR-E------------RAD 581 (691)
Q Consensus 531 ~~~~~--~~~~~~~~---~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~ 581 (691)
..+.. ........ ....| ...+...............++...+.... . ...
T Consensus 198 ~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~e 277 (389)
T PRK06765 198 NDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSFE 277 (389)
T ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhHH
Confidence 33221 11110000 00000 00000000000011111122222111110 0 001
Q ss_pred HHHH---HHHHHhcCCcchHHHHHHHhcccc---CcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCC----Cc
Q 005554 582 DWLI---SEMLRASYDPGVLVVLESIFSFKL---SLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCA----GI 651 (691)
Q Consensus 582 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~----~~ 651 (691)
.++. +..........+......+..+.. ..+....+..+++|+|+|+|+.|.++|++.. +.+.+.++ ++
T Consensus 278 ~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~-~~la~~lp~~~~~a 356 (389)
T PRK06765 278 KEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYN-YKMVDILQKQGKYA 356 (389)
T ss_pred HHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHH-HHHHHHhhhcCCCe
Confidence 1111 111111222223333333333321 1246678889999999999999999999854 44555554 68
Q ss_pred EEEEe-C-CCCCCCccChHHHHHHHHHHHHh
Q 005554 652 VIREL-D-AGHCPHDEKPEEVNSIISEWIVT 680 (691)
Q Consensus 652 ~~~~~-~-~GH~~~~e~pe~v~~~I~~fL~~ 680 (691)
+++++ + +||++++|+|+++++.|.+||++
T Consensus 357 ~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 357 EVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred EEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 88877 4 89999999999999999999975
No 54
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.86 E-value=3.1e-20 Score=170.84 Aligned_cols=222 Identities=19% Similarity=0.220 Sum_probs=154.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHh---CCcCEEEEEeCh
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV---VGEPVHLIGNSI 503 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l---~~~~v~lvGhS~ 503 (691)
+.+|||+|||.++....+.+.+.|.++||.|++|.+||||.....--..+.++|-+++.+..+.| +.+.|.++|.||
T Consensus 15 ~~AVLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlSm 94 (243)
T COG1647 15 NRAVLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGLSM 94 (243)
T ss_pred CEEEEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 47999999999999999999999999999999999999997754445778999988888876665 458899999999
Q ss_pred hHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHH
Q 005554 504 GGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDW 583 (691)
Q Consensus 504 GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (691)
||.+++.+|..+| ++++|.++++....... ..+..+. ... .-..+. .....+.
T Consensus 95 GGv~alkla~~~p--~K~iv~m~a~~~~k~~~-----------~iie~~l----~y~------~~~kk~----e~k~~e~ 147 (243)
T COG1647 95 GGVFALKLAYHYP--PKKIVPMCAPVNVKSWR-----------IIIEGLL----EYF------RNAKKY----EGKDQEQ 147 (243)
T ss_pred hhHHHHHHHhhCC--ccceeeecCCcccccch-----------hhhHHHH----HHH------HHhhhc----cCCCHHH
Confidence 9999999999999 89999999875422110 0000000 000 001111 1111122
Q ss_pred HHHHHHHhcC-CcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCC-CcEEEEe-CCCC
Q 005554 584 LISEMLRASY-DPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCA-GIVIREL-DAGH 660 (691)
Q Consensus 584 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~-~~~~~~~-~~GH 660 (691)
+.+++..... .......+..+.. +....+..|..|+++++|.+|+.+|.+...-++....+ ..++.++ ++||
T Consensus 148 ~~~e~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~KeL~~~e~SgH 222 (243)
T COG1647 148 IDKEMKSYKDTPMTTTAQLKKLIK-----DARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWLEGSGH 222 (243)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH-----HHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccCCcceeEEEccCCc
Confidence 2222221111 1111111111111 23345778999999999999999999976666666654 4567777 8999
Q ss_pred CCCccC-hHHHHHHHHHHHHh
Q 005554 661 CPHDEK-PEEVNSIISEWIVT 680 (691)
Q Consensus 661 ~~~~e~-pe~v~~~I~~fL~~ 680 (691)
.+..+. .+++.+.|..||+.
T Consensus 223 VIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 223 VITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred eeecchhHHHHHHHHHHHhhC
Confidence 888765 79999999999973
No 55
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.84 E-value=5.9e-20 Score=181.30 Aligned_cols=245 Identities=19% Similarity=0.265 Sum_probs=161.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhcC-CCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhC----CcCEEEEE
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIADG-GNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV----GEPVHLIG 500 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~~-G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~----~~~v~lvG 500 (691)
..|+++++||+.++.+.|+.+...|+.. |-.|+++|.|.||.|.... .++.+.+++|+..+++..+ ..+++++|
T Consensus 51 ~~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~-~h~~~~ma~dv~~Fi~~v~~~~~~~~~~l~G 129 (315)
T KOG2382|consen 51 RAPPAIILHGLLGSKENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKIT-VHNYEAMAEDVKLFIDGVGGSTRLDPVVLLG 129 (315)
T ss_pred CCCceEEecccccCCCCHHHHHHHhcccccCceEEEecccCCCCcccc-ccCHHHHHHHHHHHHHHcccccccCCceecc
Confidence 4899999999999999999999999875 6799999999999997644 5668999999999999885 47899999
Q ss_pred eChhH-HHHHHHHHhCccccceEEEecCCCCCCCchh--hhhhhhhhhc--------CChhhhhhHHHHHHHHhhHHHHH
Q 005554 501 NSIGG-YFVAIVACLWPAVVKSVVLINSAGNVIPEYS--FLQFSNERQA--------SGPIRLGAQLLLFYLRLNISNFV 569 (691)
Q Consensus 501 hS~GG-~ial~~A~~~P~~V~~lVll~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 569 (691)
||||| .+++..+..+|+.+..+|+++-++...+... .......... .........+...........++
T Consensus 130 HsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~~~d~~~~~fi 209 (315)
T KOG2382|consen 130 HSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEVGFDNLVRQFI 209 (315)
T ss_pred cCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHHhcchHHHHHH
Confidence 99999 8888888899999999999987754322211 1111111000 11111111111111112222222
Q ss_pred HhhcCCCC-ccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhC
Q 005554 570 KQCYPTRR-ERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHC 648 (691)
Q Consensus 570 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~ 648 (691)
...+.... .....| ..........+..+.......+.. . .....|||++.|.++.+++.+ ....+++.+
T Consensus 210 ~~nl~~~~~~~s~~w-------~~nl~~i~~~~~~~~~~s~~~~l~-~-~~~~~pvlfi~g~~S~fv~~~-~~~~~~~~f 279 (315)
T KOG2382|consen 210 LTNLKKSPSDGSFLW-------RVNLDSIASLLDEYEILSYWADLE-D-GPYTGPVLFIKGLQSKFVPDE-HYPRMEKIF 279 (315)
T ss_pred HHhcCcCCCCCceEE-------EeCHHHHHHHHHHHHhhccccccc-c-cccccceeEEecCCCCCcChh-HHHHHHHhc
Confidence 22221100 000000 000001111122211011111111 1 667889999999999999998 456788899
Q ss_pred CCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhh
Q 005554 649 AGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 649 ~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
|+++++.+ ++||++|+|+|+++.+.|.+|+.+.
T Consensus 280 p~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 280 PNVEVHELDEAGHWVHLEKPEEFIESISEFLEEP 313 (315)
T ss_pred cchheeecccCCceeecCCHHHHHHHHHHHhccc
Confidence 99999999 5999999999999999999999864
No 56
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.84 E-value=1.1e-19 Score=190.07 Aligned_cols=254 Identities=17% Similarity=0.164 Sum_probs=154.0
Q ss_pred EEcCeEEEEEEeCCC--CCeEEEEcCCCCChH-HH-------------------------HHHHHHHhcCCCEEEEeCCC
Q 005554 412 RWNGYQIQYTVAGKE--GPAILLVHGFGAFLE-HY-------------------------RDNIYDIADGGNRVWAITLL 463 (691)
Q Consensus 412 ~~~g~~i~y~~~g~~--~p~VlliHG~~~~~~-~~-------------------------~~~~~~L~~~G~~Vi~~D~~ 463 (691)
..+|.+|++..+.++ +.+|+++||++.+.. .| ..+++.|.++||+|+++|+|
T Consensus 4 ~~~g~~l~~~~~~~~~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D~r 83 (332)
T TIGR01607 4 NKDGLLLKTYSWIVKNAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDLQ 83 (332)
T ss_pred CCCCCeEEEeeeeccCCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEeccc
Confidence 347888888887643 558999999998875 21 35799999999999999999
Q ss_pred CCcCCCCCCc--C--CCHHHHHHHHHHHHHHhC------------------------CcCEEEEEeChhHHHHHHHHHhC
Q 005554 464 GFGRSEKPNI--V--YTELMWSELLRDFTVEVV------------------------GEPVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 464 G~G~S~~~~~--~--~s~~~~a~dl~~ll~~l~------------------------~~~v~lvGhS~GG~ial~~A~~~ 515 (691)
|||.|..... . .+++++++|+..+++.+. ..|++|+||||||.+++.++..+
T Consensus 84 GHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~ 163 (332)
T TIGR01607 84 GHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELL 163 (332)
T ss_pred ccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHh
Confidence 9999985421 1 378889999999987642 35799999999999999998766
Q ss_pred cc--------ccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhc-CC-CCccccHHHH
Q 005554 516 PA--------VVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCY-PT-RRERADDWLI 585 (691)
Q Consensus 516 P~--------~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 585 (691)
++ .++++|+++|........... ..........+... . ..+..... .. .....+....
T Consensus 164 ~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~-------~~~~~~~~~~l~~~-~----~~~~p~~~~~~~~~~~~~~~~~ 231 (332)
T TIGR01607 164 GKSNENNDKLNIKGCISLSGMISIKSVGSDD-------SFKFKYFYLPVMNF-M----SRVFPTFRISKKIRYEKSPYVN 231 (332)
T ss_pred ccccccccccccceEEEeccceEEecccCCC-------cchhhhhHHHHHHH-H----HHHCCcccccCccccccChhhh
Confidence 42 589999988863211000000 00000000000000 0 00000000 00 0000011111
Q ss_pred HHHHHhcC--C-cchHHHHHHHhccccCcchHhhhcCC--CCcEEEEEeCCCCCCChhHHHHHHHHhC-CCcEEEEe-CC
Q 005554 586 SEMLRASY--D-PGVLVVLESIFSFKLSLPLNYLLEGF--KEKVLIIQGIKDPISDSKSKVAMFKEHC-AGIVIREL-DA 658 (691)
Q Consensus 586 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~l~~i--~~PvLiI~G~~D~~vp~~~~~~~~~~~~-~~~~~~~~-~~ 658 (691)
+.+..... . .........++.... .....+..+ ++|+|+|+|++|.+++++.....++... ++.+++++ ++
T Consensus 232 ~~~~~Dp~~~~~~~s~~~~~~l~~~~~--~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~ 309 (332)
T TIGR01607 232 DIIKFDKFRYDGGITFNLASELIKATD--TLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSISNKELHTLEDM 309 (332)
T ss_pred hHHhcCccccCCcccHHHHHHHHHHHH--HHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccCCCcEEEEECCC
Confidence 11111110 0 001111122221111 011123444 7999999999999999986666555543 57787777 89
Q ss_pred CCCCCccC-hHHHHHHHHHHHH
Q 005554 659 GHCPHDEK-PEEVNSIISEWIV 679 (691)
Q Consensus 659 GH~~~~e~-pe~v~~~I~~fL~ 679 (691)
+|.++.|. ++++.+.|.+||+
T Consensus 310 ~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 310 DHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCCccCCCHHHHHHHHHHHhh
Confidence 99999986 7999999999986
No 57
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.82 E-value=1.3e-17 Score=178.92 Aligned_cols=228 Identities=16% Similarity=0.137 Sum_probs=143.6
Q ss_pred cCeEEEEEEeC----CCCCeEEEEcCCCCCh-HHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHH
Q 005554 414 NGYQIQYTVAG----KEGPAILLVHGFGAFL-EHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFT 488 (691)
Q Consensus 414 ~g~~i~y~~~g----~~~p~VlliHG~~~~~-~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll 488 (691)
+|.+|...... .+.|+||++||+++.. +.|..++..|+++||+|+++|+||+|.|.......+.......+.+++
T Consensus 177 ~g~~l~g~l~~P~~~~~~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~~~d~~~~~~avld~l 256 (414)
T PRK05077 177 GGGPITGFLHLPKGDGPFPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQAVLNAL 256 (414)
T ss_pred CCcEEEEEEEECCCCCCccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCccccHHHHHHHHHHHH
Confidence 45466644321 2356777777776653 578888899999999999999999999975332234444555666666
Q ss_pred HHh---CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhH
Q 005554 489 VEV---VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNI 565 (691)
Q Consensus 489 ~~l---~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (691)
... +.+++.++||||||.+++.+|..+|++|+++|+++++....... . ...... ....
T Consensus 257 ~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~-------~---~~~~~~---------p~~~ 317 (414)
T PRK05077 257 PNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTD-------P---KRQQQV---------PEMY 317 (414)
T ss_pred HhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcc-------h---hhhhhc---------hHHH
Confidence 554 45789999999999999999999999999999998864211000 0 000000 0000
Q ss_pred HHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHH
Q 005554 566 SNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFK 645 (691)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~ 645 (691)
...+...+.... .....+... +..+.... ......++++|+|+|+|++|.++|++. .+.+.
T Consensus 318 ~~~la~~lg~~~-~~~~~l~~~----------------l~~~sl~~-~~~l~~~i~~PvLiI~G~~D~ivP~~~-a~~l~ 378 (414)
T PRK05077 318 LDVLASRLGMHD-ASDEALRVE----------------LNRYSLKV-QGLLGRRCPTPMLSGYWKNDPFSPEED-SRLIA 378 (414)
T ss_pred HHHHHHHhCCCC-CChHHHHHH----------------hhhccchh-hhhhccCCCCcEEEEecCCCCCCCHHH-HHHHH
Confidence 111111111100 000111110 00010000 000125789999999999999999985 45667
Q ss_pred HhCCCcEEEEeCCCCCCCccChHHHHHHHHHHHHhh
Q 005554 646 EHCAGIVIRELDAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 646 ~~~~~~~~~~~~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
...++.++++++.. ++.+.++++.+.|.+||++.
T Consensus 379 ~~~~~~~l~~i~~~--~~~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 379 SSSADGKLLEIPFK--PVYRNFDKALQEISDWLEDR 412 (414)
T ss_pred HhCCCCeEEEccCC--CccCCHHHHHHHHHHHHHHH
Confidence 77889998888433 56789999999999999875
No 58
>PRK10985 putative hydrolase; Provisional
Probab=99.82 E-value=2.2e-18 Score=180.34 Aligned_cols=241 Identities=15% Similarity=0.146 Sum_probs=139.5
Q ss_pred CCeEEEEcCCCCChH--HHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC-cCC---CHHHHHHHHHHHHHHhCCcCEEEEE
Q 005554 427 GPAILLVHGFGAFLE--HYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVY---TELMWSELLRDFTVEVVGEPVHLIG 500 (691)
Q Consensus 427 ~p~VlliHG~~~~~~--~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-~~~---s~~~~a~dl~~ll~~l~~~~v~lvG 500 (691)
+|+||++||++++.. .+..++..|.++||+|+++|+||||.+.... ..+ ..+|....+..+.+.++..+++++|
T Consensus 58 ~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~~vG 137 (324)
T PRK10985 58 KPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHRIYHSGETEDARFFLRWLQREFGHVPTAAVG 137 (324)
T ss_pred CCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcceECCCchHHHHHHHHHHHHhCCCCCEEEEE
Confidence 689999999987633 3556889999999999999999999875432 112 2344444444444556667899999
Q ss_pred eChhHHHHHHHHHhCccc--cceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCc
Q 005554 501 NSIGGYFVAIVACLWPAV--VKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRE 578 (691)
Q Consensus 501 hS~GG~ial~~A~~~P~~--V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (691)
|||||.+++.+++.+++. ++++|+++++........ ... .........................+.. ..
T Consensus 138 ~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~--~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~- 208 (324)
T PRK10985 138 YSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSY--RME-----QGFSRVYQRYLLNLLKANAARKLAAYPG-TL- 208 (324)
T ss_pred ecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHH--HHh-----hhHHHHHHHHHHHHHHHHHHHHHHhccc-cc-
Confidence 999999999988887654 899999998643211100 000 0000011110000011111111111111 00
Q ss_pred cccHHHHH------HHHHhcCCc--chHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCC
Q 005554 579 RADDWLIS------EMLRASYDP--GVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAG 650 (691)
Q Consensus 579 ~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~ 650 (691)
..+..... ++-.....+ ++.... .++. ..+....+.++++|+++|+|++|.+++++. .+.+.+..++
T Consensus 209 ~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~-~~y~---~~~~~~~l~~i~~P~lii~g~~D~~~~~~~-~~~~~~~~~~ 283 (324)
T PRK10985 209 PINLAQLKSVRRLREFDDLITARIHGFADAI-DYYR---QCSALPLLNQIRKPTLIIHAKDDPFMTHEV-IPKPESLPPN 283 (324)
T ss_pred cCCHHHHhcCCcHHHHhhhheeccCCCCCHH-HHHH---HCChHHHHhCCCCCEEEEecCCCCCCChhh-ChHHHHhCCC
Confidence 11111110 000000000 111111 1111 122345678999999999999999999874 3445667788
Q ss_pred cEEEEe-CCCCCCCccCh-----HHHHHHHHHHHHhh
Q 005554 651 IVIREL-DAGHCPHDEKP-----EEVNSIISEWIVTI 681 (691)
Q Consensus 651 ~~~~~~-~~GH~~~~e~p-----e~v~~~I~~fL~~~ 681 (691)
.+++++ ++||+.++|.. ..+-+.+.+|++..
T Consensus 284 ~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 284 VEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred eEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 888777 89999998742 35667778888654
No 59
>PRK13604 luxD acyl transferase; Provisional
Probab=99.81 E-value=2.8e-18 Score=171.83 Aligned_cols=229 Identities=13% Similarity=0.100 Sum_probs=140.3
Q ss_pred cCeEEEEEEeCC------CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCC-cCCCCCCcCCCHHHHHHHHHH
Q 005554 414 NGYQIQYTVAGK------EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGF-GRSEKPNIVYTELMWSELLRD 486 (691)
Q Consensus 414 ~g~~i~y~~~g~------~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~-G~S~~~~~~~s~~~~a~dl~~ 486 (691)
+|.+|.-....+ +.++||++||++++...|..+++.|+++||.|+.+|++|+ |.|++.....+......|+..
T Consensus 18 dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~a 97 (307)
T PRK13604 18 NGQSIRVWETLPKENSPKKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLT 97 (307)
T ss_pred CCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCcccccHHHHHH
Confidence 667776554433 2478999999999988899999999999999999999987 999775544454445666655
Q ss_pred HHHHh---CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHh
Q 005554 487 FTVEV---VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRL 563 (691)
Q Consensus 487 ll~~l---~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (691)
+++.+ +.+++.|+||||||.+++..|... .++++|+.+|....... ...
T Consensus 98 aid~lk~~~~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~d~--------------------------l~~ 149 (307)
T PRK13604 98 VVDWLNTRGINNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLRDT--------------------------LER 149 (307)
T ss_pred HHHHHHhcCCCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHHHH--------------------------HHH
Confidence 55443 457899999999999997777643 39999999986432100 000
Q ss_pred hHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhcc--ccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHH
Q 005554 564 NISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSF--KLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKV 641 (691)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~ 641 (691)
....... .++ ........ + . ..........+...+.. .......+.++.+++|+|+|||++|.++|.+...
T Consensus 150 ~~~~~~~-~~p--~~~lp~~~-d--~-~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~ 222 (307)
T PRK13604 150 ALGYDYL-SLP--IDELPEDL-D--F-EGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVI 222 (307)
T ss_pred hhhcccc-cCc--cccccccc-c--c-ccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHH
Confidence 0000000 000 00000000 0 0 00000001111111111 1112223456678899999999999999999877
Q ss_pred HHHHHhC-CCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhhh
Q 005554 642 AMFKEHC-AGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 642 ~~~~~~~-~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~ 682 (691)
++++... .+++++++ +++|.+.. ++ -.+++|.+.+.
T Consensus 223 ~l~e~~~s~~kkl~~i~Ga~H~l~~-~~----~~~~~~~~~~~ 260 (307)
T PRK13604 223 DLLDSIRSEQCKLYSLIGSSHDLGE-NL----VVLRNFYQSVT 260 (307)
T ss_pred HHHHHhccCCcEEEEeCCCccccCc-ch----HHHHHHHHHHH
Confidence 7777654 57787777 89997653 33 33455555543
No 60
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.80 E-value=3.1e-19 Score=177.25 Aligned_cols=216 Identities=20% Similarity=0.192 Sum_probs=131.4
Q ss_pred CEEEEeCCCCCcCCCC----CCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 455 NRVWAITLLGFGRSEK----PNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 455 ~~Vi~~D~~G~G~S~~----~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
|+|+++|+||+|.|++ ....++.+++++++..+++.++.++++++||||||.+++.+|+.+|++|+++|+++++..
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~~~ 80 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPERVKKLVLISPPPD 80 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSH
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCchhhcCcEEEeeecc
Confidence 7899999999999994 246889999999999999999999999999999999999999999999999999998520
Q ss_pred CCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhc----CCC---CccccHH-HHHHHHHhcCCcchHHHHH
Q 005554 531 VIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCY----PTR---RERADDW-LISEMLRASYDPGVLVVLE 602 (691)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~ 602 (691)
............ ........................... ... ....... ....+..............
T Consensus 81 -~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (230)
T PF00561_consen 81 -LPDGLWNRIWPR---GNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNMFW 156 (230)
T ss_dssp -HHHHHHHHCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -chhhhhHHHHhh---hhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhhcc
Confidence 000000000000 000000000000000000000000000 000 0000000 0011111000000000001
Q ss_pred HHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHH
Q 005554 603 SIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIIS 675 (691)
Q Consensus 603 ~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~ 675 (691)
.........+....+..+++|+++++|++|.++|++.. ..+.+..|+.+++++ ++||+.+++.|+++++.|.
T Consensus 157 ~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~-~~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 157 NALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESS-EQLAKLIPNSQLVLIEGSGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp HHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHH-HHHHHHSTTEEEEEETTCCSTHHHHSHHHHHHHHH
T ss_pred ccccccccccccccccccCCCeEEEEeCCCCCCCHHHH-HHHHHhcCCCEEEECCCCChHHHhcCHHhhhhhhc
Confidence 01111222334456778999999999999999999854 448889999999888 7799999999999999885
No 61
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.80 E-value=9.6e-18 Score=171.03 Aligned_cols=227 Identities=19% Similarity=0.114 Sum_probs=137.3
Q ss_pred CCeEEEEcCCCC----ChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHh-----CCcCEE
Q 005554 427 GPAILLVHGFGA----FLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV-----VGEPVH 497 (691)
Q Consensus 427 ~p~VlliHG~~~----~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l-----~~~~v~ 497 (691)
+++||++||++. +...|..+++.|+++||+|+++|++|||.|.... .+++++.+|+.++++.+ +.++++
T Consensus 26 ~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~--~~~~~~~~d~~~~~~~l~~~~~g~~~i~ 103 (274)
T TIGR03100 26 TTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN--LGFEGIDADIAAAIDAFREAAPHLRRIV 103 (274)
T ss_pred CCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHhhCCCCCcEE
Confidence 567888888653 4455677899999999999999999999987532 46777888888888776 457799
Q ss_pred EEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhH-HHHHHhhcCCC
Q 005554 498 LIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNI-SNFVKQCYPTR 576 (691)
Q Consensus 498 lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 576 (691)
++||||||.+++.+|.. +++|+++|+++|......... ...... .+..... ..+........
T Consensus 104 l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~~g~ 166 (274)
T TIGR03100 104 AWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQA-------------ASRIRH---YYLGQLLSADFWRKLLSGE 166 (274)
T ss_pred EEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccch-------------HHHHHH---HHHHHHhChHHHHHhcCCC
Confidence 99999999999999865 467999999998632111000 000000 0000000 01111111111
Q ss_pred Cc--cccHHHHHHHHHh-cCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHH-----HHHHHhC
Q 005554 577 RE--RADDWLISEMLRA-SYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKV-----AMFKEHC 648 (691)
Q Consensus 577 ~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~-----~~~~~~~ 648 (691)
.. .....+....... ........ ......+...+..+++|+|+++|..|...+.- .. ....+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~-~~~~~~~~~~~~~l 238 (274)
T TIGR03100 167 VNLGSSLRGLGDALLKARQKGDEVAH-------GGLAERMKAGLERFQGPVLFILSGNDLTAQEF-ADSVLGEPAWRGAL 238 (274)
T ss_pred ccHHHHHHHHHHHHHhhhhcCCCccc-------chHHHHHHHHHHhcCCcEEEEEcCcchhHHHH-HHHhccChhhHHHh
Confidence 00 0001111100000 00000000 00112233456678999999999999886421 10 2333333
Q ss_pred --CCcEEEEe-CCCCCCCccC-hHHHHHHHHHHHHh
Q 005554 649 --AGIVIREL-DAGHCPHDEK-PEEVNSIISEWIVT 680 (691)
Q Consensus 649 --~~~~~~~~-~~GH~~~~e~-pe~v~~~I~~fL~~ 680 (691)
++++++.+ ++||++..+. ++++.+.|.+||++
T Consensus 239 ~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 239 EDPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred hcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 78888878 8999996666 69999999999963
No 62
>PLN02872 triacylglycerol lipase
Probab=99.77 E-value=1.4e-17 Score=176.19 Aligned_cols=274 Identities=16% Similarity=0.140 Sum_probs=158.8
Q ss_pred eEEEEE-EEcCeEEEEEEeC--------CCCCeEEEEcCCCCChHHHH------HHHHHHhcCCCEEEEeCCCCCcCCCC
Q 005554 406 YSTRIW-RWNGYQIQYTVAG--------KEGPAILLVHGFGAFLEHYR------DNIYDIADGGNRVWAITLLGFGRSEK 470 (691)
Q Consensus 406 ~~~~~~-~~~g~~i~y~~~g--------~~~p~VlliHG~~~~~~~~~------~~~~~L~~~G~~Vi~~D~~G~G~S~~ 470 (691)
.+.+.+ +-||+.|...... ..+|+|+|+||+++++..|. .++..|+++||+|+++|+||+|.|.+
T Consensus 44 ~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~g 123 (395)
T PLN02872 44 CTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYG 123 (395)
T ss_pred ceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccC
Confidence 344444 4578888776642 12679999999998888773 35567888999999999999886632
Q ss_pred -------CC--cCCCHHHHH-HHHHHHHHHh---CCcCEEEEEeChhHHHHHHHHHhCcc---ccceEEEecCCCCCCCc
Q 005554 471 -------PN--IVYTELMWS-ELLRDFTVEV---VGEPVHLIGNSIGGYFVAIVACLWPA---VVKSVVLINSAGNVIPE 534 (691)
Q Consensus 471 -------~~--~~~s~~~~a-~dl~~ll~~l---~~~~v~lvGhS~GG~ial~~A~~~P~---~V~~lVll~~~~~~~~~ 534 (691)
+. .++++++++ .|+.++++.+ ..+++++|||||||.+++.++ .+|+ +|+.+++++|.......
T Consensus 124 h~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~~~~ 202 (395)
T PLN02872 124 HVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSITNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYLDHV 202 (395)
T ss_pred CCCCCccchhccCCcHHHHHHHHHHHHHHHHHhccCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhhccC
Confidence 11 257888888 7999999886 347899999999999998555 5776 68899999987543211
Q ss_pred hhhhh-h-hhhhh---------cCC--hhhhhhHHHHHHH--HhhHHHHHHhhcCCCCccccHHHHHHHHHh--------
Q 005554 535 YSFLQ-F-SNERQ---------ASG--PIRLGAQLLLFYL--RLNISNFVKQCYPTRRERADDWLISEMLRA-------- 591 (691)
Q Consensus 535 ~~~~~-~-~~~~~---------~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 591 (691)
..... . ..... ..+ .......+....- .......+..+.... ...+......+...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~-~~~n~~~~~~~~~~~pagtS~k 281 (395)
T PLN02872 203 TAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTN-CCFNASRIDYYLEYEPHPSSVK 281 (395)
T ss_pred CCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCC-cccchhhhhHHHhcCCCcchHH
Confidence 10000 0 00000 000 0000000000000 000001111111111 11111111111111
Q ss_pred ---------------cCCcchHHHHHHHhccccCcchHhhhcCC--CCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEE
Q 005554 592 ---------------SYDPGVLVVLESIFSFKLSLPLNYLLEGF--KEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIR 654 (691)
Q Consensus 592 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~i--~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~ 654 (691)
.++.+.. .....+....+....+.++ ++|+++++|++|.+++++...+.+....+..+++
T Consensus 282 ~~~H~~Q~~~s~~f~~yDyg~~---~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~~~~l~ 358 (395)
T PLN02872 282 NLRHLFQMIRKGTFAHYDYGIF---KNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPSKPELL 358 (395)
T ss_pred HHHHHHHHHhcCCcccCCCCch---hhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCCccEEE
Confidence 0111110 1111122223334456777 5799999999999999986655555554435666
Q ss_pred Ee-CCCCC---CCccChHHHHHHHHHHHHhhhCC
Q 005554 655 EL-DAGHC---PHDEKPEEVNSIISEWIVTIESK 684 (691)
Q Consensus 655 ~~-~~GH~---~~~e~pe~v~~~I~~fL~~~~~~ 684 (691)
.+ ++||. ...+.|+++.+.|.+|+++..+.
T Consensus 359 ~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~~ 392 (395)
T PLN02872 359 YLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGKS 392 (395)
T ss_pred EcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhhc
Confidence 66 89995 44578999999999999976543
No 63
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.76 E-value=2.9e-17 Score=173.93 Aligned_cols=265 Identities=15% Similarity=0.144 Sum_probs=146.1
Q ss_pred EEcCeEEEEEEeC---CCCCeEEEEcCCCCChHHH-----HHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHH-
Q 005554 412 RWNGYQIQYTVAG---KEGPAILLVHGFGAFLEHY-----RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSE- 482 (691)
Q Consensus 412 ~~~g~~i~y~~~g---~~~p~VlliHG~~~~~~~~-----~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~- 482 (691)
+.++.+++..... ..+++||++||+..+...+ ..+++.|.++||+|+++|++|+|.|+. ..++++++.
T Consensus 44 ~~~~~~l~~~~~~~~~~~~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~---~~~~~d~~~~ 120 (350)
T TIGR01836 44 REDKVVLYRYTPVKDNTHKTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADR---YLTLDDYING 120 (350)
T ss_pred EcCcEEEEEecCCCCcCCCCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHh---cCCHHHHHHH
Confidence 3344555544322 1256899999986555443 579999999999999999999998754 345555543
Q ss_pred ----HHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhh--------cCCh-
Q 005554 483 ----LLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQ--------ASGP- 549 (691)
Q Consensus 483 ----dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~--------~~~~- 549 (691)
.+..+.+..+.++++++||||||.+++.+++.+|++|+++|+++++................. ...+
T Consensus 121 ~~~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 200 (350)
T TIGR01836 121 YIDKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIP 200 (350)
T ss_pred HHHHHHHHHHHHhCCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCC
Confidence 344455566778999999999999999999999999999999998765432111100000000 0000
Q ss_pred hhhhhHHHHHHH--HhhHHHHHHhhcC-CCCccccHHH-HHHHHHhcCCc---chHHHHHHHhccccC-------cchHh
Q 005554 550 IRLGAQLLLFYL--RLNISNFVKQCYP-TRRERADDWL-ISEMLRASYDP---GVLVVLESIFSFKLS-------LPLNY 615 (691)
Q Consensus 550 ~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~ 615 (691)
............ ......+...... .......... ...+....... .....+..++....- .....
T Consensus 201 ~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~ 280 (350)
T TIGR01836 201 GELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKV 280 (350)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEc
Confidence 000000000000 0000001100000 0000000000 00000000000 011111111111100 00112
Q ss_pred hhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCC--CcEEEEeCCCCCCCccC---hHHHHHHHHHHHHh
Q 005554 616 LLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCA--GIVIRELDAGHCPHDEK---PEEVNSIISEWIVT 680 (691)
Q Consensus 616 ~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~--~~~~~~~~~GH~~~~e~---pe~v~~~I~~fL~~ 680 (691)
.+.++++|+++++|++|.++|++.... +.+..+ +.++++.++||+..+.. ++++...|.+||++
T Consensus 281 ~l~~i~~Pvliv~G~~D~i~~~~~~~~-~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 281 DLKNIKMPILNIYAERDHLVPPDASKA-LNDLVSSEDYTELSFPGGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred cHHhCCCCeEEEecCCCCcCCHHHHHH-HHHHcCCCCeEEEEcCCCCEEEEECchhHhhhhHHHHHHHHh
Confidence 366889999999999999999985544 444444 34556568999887765 48999999999975
No 64
>PRK10566 esterase; Provisional
Probab=99.75 E-value=2.2e-16 Score=159.21 Aligned_cols=202 Identities=14% Similarity=0.133 Sum_probs=120.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHH-------HHHHHHHHHHHH------hCC
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTEL-------MWSELLRDFTVE------VVG 493 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~-------~~a~dl~~ll~~------l~~ 493 (691)
.|+||++||++++...|..++..|.++||+|+++|+||||.+.......++. ...+++.++++. ++.
T Consensus 27 ~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (249)
T PRK10566 27 LPTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLD 106 (249)
T ss_pred CCEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCc
Confidence 5899999999999988999999999999999999999999764322111111 122333333333 234
Q ss_pred cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhc
Q 005554 494 EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCY 573 (691)
Q Consensus 494 ~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (691)
++++++||||||.+++.++.++|+....++++++... .... . ..+....
T Consensus 107 ~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~-------------------~~~~--------~----~~~~~~~ 155 (249)
T PRK10566 107 DRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYF-------------------TSLA--------R----TLFPPLI 155 (249)
T ss_pred cceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHH-------------------HHHH--------H----Hhccccc
Confidence 6899999999999999999998874334444433200 0000 0 0000000
Q ss_pred CCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCC-CCcEEEEEeCCCCCCChhHHHHHHHHhCC---
Q 005554 574 PTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGF-KEKVLIIQGIKDPISDSKSKVAMFKEHCA--- 649 (691)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i-~~PvLiI~G~~D~~vp~~~~~~~~~~~~~--- 649 (691)
..... ........ ...... .+....+.++ ++|+|+|+|++|.++|++...++.+....
T Consensus 156 ~~~~~--~~~~~~~~------------~~~~~~----~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~ 217 (249)
T PRK10566 156 PETAA--QQAEFNNI------------VAPLAE----WEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGL 217 (249)
T ss_pred ccccc--cHHHHHHH------------HHHHhh----cChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCC
Confidence 00000 00000000 000000 1112234555 69999999999999999865554443322
Q ss_pred --CcEEEEe-CCCCCCCccChHHHHHHHHHHHHhh
Q 005554 650 --GIVIREL-DAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 650 --~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
+.+++.. ++||... + +..+.+.+||++.
T Consensus 218 ~~~~~~~~~~~~~H~~~---~-~~~~~~~~fl~~~ 248 (249)
T PRK10566 218 DKNLTCLWEPGVRHRIT---P-EALDAGVAFFRQH 248 (249)
T ss_pred CcceEEEecCCCCCccC---H-HHHHHHHHHHHhh
Confidence 2455555 8999863 3 5678999999863
No 65
>PRK11071 esterase YqiA; Provisional
Probab=99.75 E-value=1.6e-16 Score=152.13 Aligned_cols=180 Identities=18% Similarity=0.271 Sum_probs=122.2
Q ss_pred CeEEEEcCCCCChHHHHH--HHHHHhcC--CCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeCh
Q 005554 428 PAILLVHGFGAFLEHYRD--NIYDIADG--GNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSI 503 (691)
Q Consensus 428 p~VlliHG~~~~~~~~~~--~~~~L~~~--G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~ 503 (691)
|+||++||++++...|.. +...|.+. +|+|+++|+||+| +++++++.+++++++.++++++||||
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~-----------~~~~~~l~~l~~~~~~~~~~lvG~S~ 70 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPYP-----------ADAAELLESLVLEHGGDPLGLVGSSL 70 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCCH-----------HHHHHHHHHHHHHcCCCCeEEEEECH
Confidence 689999999999998874 34556542 6999999999985 46888999999999999999999999
Q ss_pred hHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHh---hcCCCCccc
Q 005554 504 GGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQ---CYPTRRERA 580 (691)
Q Consensus 504 GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 580 (691)
||.+++.+|.++|. ++|+++|+..+. . ....++.. .+.......
T Consensus 71 Gg~~a~~~a~~~~~---~~vl~~~~~~~~---~---------------------------~~~~~~~~~~~~~~~~~~~~ 117 (190)
T PRK11071 71 GGYYATWLSQCFML---PAVVVNPAVRPF---E---------------------------LLTDYLGENENPYTGQQYVL 117 (190)
T ss_pred HHHHHHHHHHHcCC---CEEEECCCCCHH---H---------------------------HHHHhcCCcccccCCCcEEE
Confidence 99999999999983 468888863310 0 00000000 000000011
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCC
Q 005554 581 DDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-DAG 659 (691)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~G 659 (691)
.....+ ...... .. .+. ..+|+++|+|++|.++|.+...+.++ +++.+++ +++
T Consensus 118 ~~~~~~----------------d~~~~~----~~-~i~-~~~~v~iihg~~De~V~~~~a~~~~~----~~~~~~~~ggd 171 (190)
T PRK11071 118 ESRHIY----------------DLKVMQ----ID-PLE-SPDLIWLLQQTGDEVLDYRQAVAYYA----ACRQTVEEGGN 171 (190)
T ss_pred cHHHHH----------------HHHhcC----Cc-cCC-ChhhEEEEEeCCCCcCCHHHHHHHHH----hcceEEECCCC
Confidence 111111 111111 11 122 67789999999999999997666655 3355555 899
Q ss_pred CCCCccChHHHHHHHHHHHH
Q 005554 660 HCPHDEKPEEVNSIISEWIV 679 (691)
Q Consensus 660 H~~~~e~pe~v~~~I~~fL~ 679 (691)
|.. ...+++.+.|.+|+.
T Consensus 172 H~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 172 HAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred cch--hhHHHhHHHHHHHhc
Confidence 977 445899999999975
No 66
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.74 E-value=4.5e-17 Score=176.84 Aligned_cols=239 Identities=15% Similarity=0.075 Sum_probs=141.4
Q ss_pred CCeEEEEcCCCCChHHHH-----HHHHHHhcCCCEEEEeCCCCCcCCCCCC--cCCCHHHHHHHHHHHHHHhCCcCEEEE
Q 005554 427 GPAILLVHGFGAFLEHYR-----DNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSELLRDFTVEVVGEPVHLI 499 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~-----~~~~~L~~~G~~Vi~~D~~G~G~S~~~~--~~~s~~~~a~dl~~ll~~l~~~~v~lv 499 (691)
+++|||+||+......|. .+++.|.++||+|+++|++|+|.|.... .+|..+.+.+.+..+++.++.++++++
T Consensus 188 ~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lv 267 (532)
T TIGR01838 188 KTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCV 267 (532)
T ss_pred CCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 689999999988777774 7999999999999999999999886532 355566677778888888899999999
Q ss_pred EeChhHHHHH----HHHHhC-ccccceEEEecCCCCCCCchhhhhhh---------hhh-hcCChhh-hhhHHHHHH--H
Q 005554 500 GNSIGGYFVA----IVACLW-PAVVKSVVLINSAGNVIPEYSFLQFS---------NER-QASGPIR-LGAQLLLFY--L 561 (691)
Q Consensus 500 GhS~GG~ial----~~A~~~-P~~V~~lVll~~~~~~~~~~~~~~~~---------~~~-~~~~~~~-~~~~~~~~~--~ 561 (691)
||||||.++. .+++.+ +++|++++++++............+. ... ....+.. ......... .
T Consensus 268 G~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~lrp~ 347 (532)
T TIGR01838 268 GYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGELGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSLLREN 347 (532)
T ss_pred EECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcchhhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHhcChh
Confidence 9999999862 245555 78899999999876543211100000 000 0000000 000000000 0
Q ss_pred HhhHHHHHHhhcCCCCccccHHHHHHHHHhcCC-cc--hHHHHHHHhcccc-------CcchHhhhcCCCCcEEEEEeCC
Q 005554 562 RLNISNFVKQCYPTRRERADDWLISEMLRASYD-PG--VLVVLESIFSFKL-------SLPLNYLLEGFKEKVLIIQGIK 631 (691)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~-------~~~~~~~l~~i~~PvLiI~G~~ 631 (691)
...+..++..+....... . .....+...... ++ ....+..++..+. ..+....+..|++|+++|+|++
T Consensus 348 ~l~w~~~v~~yl~g~~~~-~-fdll~Wn~D~t~lP~~~~~~~lr~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G~~ 425 (532)
T TIGR01838 348 DLIWNYYVDNYLKGKSPV-P-FDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIATRE 425 (532)
T ss_pred hHHHHHHHHHHhcCCCcc-c-hhHHHHhccCccchHHHHHHHHHHHHhcCCCcCCeeEECCEecchhhCCCCEEEEeeCC
Confidence 001111222221111100 0 000011100000 11 1112222222111 0122346789999999999999
Q ss_pred CCCCChhHHHHHHHHhCCCcEEEEe-CCCCCCCccChH
Q 005554 632 DPISDSKSKVAMFKEHCAGIVIREL-DAGHCPHDEKPE 668 (691)
Q Consensus 632 D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe 668 (691)
|.++|++. ...+.+.+++.+..++ ++||.+++++|.
T Consensus 426 D~IvP~~s-a~~l~~~i~~~~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 426 DHIAPWQS-AYRGAALLGGPKTFVLGESGHIAGVVNPP 462 (532)
T ss_pred CCcCCHHH-HHHHHHHCCCCEEEEECCCCCchHhhCCC
Confidence 99999984 4556667778777777 899999998863
No 67
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.74 E-value=2.7e-16 Score=158.31 Aligned_cols=260 Identities=23% Similarity=0.270 Sum_probs=151.1
Q ss_pred EcCeEEEEEEeCCCCCeEEEEcCCCCChHHHHHHHHHHhcCC--CEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHH
Q 005554 413 WNGYQIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGG--NRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE 490 (691)
Q Consensus 413 ~~g~~i~y~~~g~~~p~VlliHG~~~~~~~~~~~~~~L~~~G--~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~ 490 (691)
..+..+.|...+..+|+|+++||++++...|......+.... |+|+++|+||||.|. .. .++...+++++..+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~-~~-~~~~~~~~~~~~~~~~~ 84 (282)
T COG0596 7 ADGVRLAYREAGGGGPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSD-PA-GYSLSAYADDLAALLDA 84 (282)
T ss_pred CCCeEEEEeecCCCCCeEEEeCCCCCchhhhHHHHHHhhccccceEEEEecccCCCCCC-cc-cccHHHHHHHHHHHHHH
Confidence 345567777766557799999999999988887434443321 899999999999997 22 34556669999999999
Q ss_pred hCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhh-hhhhhcCChhhhhhHH-HHHHHHhhHHH-
Q 005554 491 VVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQF-SNERQASGPIRLGAQL-LLFYLRLNISN- 567 (691)
Q Consensus 491 l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 567 (691)
++..+++++||||||.+++.++.++|++++++|++++............. ................ ...........
T Consensus 85 ~~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (282)
T COG0596 85 LGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAALRQPAGAAPLAALADLLLGLDAAAFAALLAALG 164 (282)
T ss_pred hCCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCCCcccccCccccCccccchhhhhhhhhccchhhhhhhhhccc
Confidence 99988999999999999999999999999999999986431110000000 0000000000000000 00000000000
Q ss_pred HHHhhcCC----CCccccHHHHHHH---HHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHH
Q 005554 568 FVKQCYPT----RRERADDWLISEM---LRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSK 640 (691)
Q Consensus 568 ~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~ 640 (691)
........ ............. ...... .. ...................+++|+++++|.+|.+.+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~d~~~~~~~- 239 (282)
T COG0596 165 LLAALAAAARAGLAEALRAPLLGAAAAAFARAAR-AD---LAAALLALLDRDLRAALARITVPTLIIHGEDDPVVPAEL- 239 (282)
T ss_pred ccccccccchhccccccccccchhHhhhhhhhcc-cc---cchhhhcccccccchhhccCCCCeEEEecCCCCcCCHHH-
Confidence 00000000 0000000000000 000000 00 000000000002234567888999999999997766653
Q ss_pred HHHHHHhCCC-cEEEEe-CCCCCCCccChHHHHHHHHHHHH
Q 005554 641 VAMFKEHCAG-IVIREL-DAGHCPHDEKPEEVNSIISEWIV 679 (691)
Q Consensus 641 ~~~~~~~~~~-~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~ 679 (691)
...+....++ .+++++ ++||++++++|+.+++.+.+|++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~~~ 280 (282)
T COG0596 240 ARRLAAALPNDARLVVIPGAGHFPHLEAPEAFAAALLAFLE 280 (282)
T ss_pred HHHHHhhCCCCceEEEeCCCCCcchhhcHHHHHHHHHHHHh
Confidence 4455556664 777777 89999999999999999988554
No 68
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.70 E-value=2.2e-15 Score=151.02 Aligned_cols=267 Identities=18% Similarity=0.152 Sum_probs=168.8
Q ss_pred EcCeEEEEEEeCCC----CCeEEEEcCCCCChH-----------HHHHHHH---HHhcCCCEEEEeCCCCCc-CCCCCC-
Q 005554 413 WNGYQIQYTVAGKE----GPAILLVHGFGAFLE-----------HYRDNIY---DIADGGNRVWAITLLGFG-RSEKPN- 472 (691)
Q Consensus 413 ~~g~~i~y~~~g~~----~p~VlliHG~~~~~~-----------~~~~~~~---~L~~~G~~Vi~~D~~G~G-~S~~~~- 472 (691)
+.+..|.|..+|.- ..+||++||+++++. .|..++. .+....|.||+.|..|.+ .|+.|.
T Consensus 33 l~~~~vay~T~Gtln~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s 112 (368)
T COG2021 33 LSDARVAYETYGTLNAEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSS 112 (368)
T ss_pred ccCcEEEEEecccccccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCC
Confidence 46788999999853 468999999988543 3444432 233334999999998876 454432
Q ss_pred ------------cCCCHHHHHHHHHHHHHHhCCcCEE-EEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhh
Q 005554 473 ------------IVYTELMWSELLRDFTVEVVGEPVH-LIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQ 539 (691)
Q Consensus 473 ------------~~~s~~~~a~dl~~ll~~l~~~~v~-lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~ 539 (691)
..++++|+++.-..++++||++++. +||.||||+.++.++..||++|.++|.++++....+......
T Consensus 113 ~~p~g~~yg~~FP~~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~ 192 (368)
T COG2021 113 INPGGKPYGSDFPVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFN 192 (368)
T ss_pred cCCCCCccccCCCcccHHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHH
Confidence 2468999999889999999999976 899999999999999999999999999998755443221111
Q ss_pred hhh----hhhcCC-----------hhhhhhHHHHHHHHhhHHHHHHhhcCC----CCccc--cHHHHHHHH--------H
Q 005554 540 FSN----ERQASG-----------PIRLGAQLLLFYLRLNISNFVKQCYPT----RRERA--DDWLISEML--------R 590 (691)
Q Consensus 540 ~~~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~--------~ 590 (691)
... ...+.| ...+................+...+.. .+... ....++.++ .
T Consensus 193 ~~~r~AI~~DP~~n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~ 272 (368)
T COG2021 193 EVQRQAIEADPDWNGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVA 272 (368)
T ss_pred HHHHHHHHhCCCccCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHh
Confidence 000 011111 000100000111111111122222221 11110 122233332 2
Q ss_pred hcCCcchHHHHHHHhccccC---cchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcE-EEEe--CCCCCCCc
Q 005554 591 ASYDPGVLVVLESIFSFKLS---LPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIV-IREL--DAGHCPHD 664 (691)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~-~~~~--~~GH~~~~ 664 (691)
...........+++..++.. .++...++.+++|+|++.-+.|.+.|++...+. .+.++.+. ++++ +.||..++
T Consensus 273 rfDaNsYL~lt~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~-~~~L~~~~~~~~i~S~~GHDaFL 351 (368)
T COG2021 273 RFDANSYLYLTRALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRAL-AEALPAAGALREIDSPYGHDAFL 351 (368)
T ss_pred ccCcchHHHHHHHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHH-HHhccccCceEEecCCCCchhhh
Confidence 23333444444454444432 356677899999999999999999999965554 44444444 6555 78999999
Q ss_pred cChHHHHHHHHHHHHh
Q 005554 665 EKPEEVNSIISEWIVT 680 (691)
Q Consensus 665 e~pe~v~~~I~~fL~~ 680 (691)
...+.+...|..||+.
T Consensus 352 ~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 352 VESEAVGPLIRKFLAL 367 (368)
T ss_pred cchhhhhHHHHHHhhc
Confidence 9999999999999975
No 69
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.70 E-value=6.9e-17 Score=153.29 Aligned_cols=254 Identities=16% Similarity=0.163 Sum_probs=145.7
Q ss_pred EEEEEeCC---CCCeEEEEcCCCCChHHHHHHHHHHhcC-CCEEEEeCCCCCcCCCCCC-cCCCHHHHHHHHHHHHHHhC
Q 005554 418 IQYTVAGK---EGPAILLVHGFGAFLEHYRDNIYDIADG-GNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVV 492 (691)
Q Consensus 418 i~y~~~g~---~~p~VlliHG~~~~~~~~~~~~~~L~~~-G~~Vi~~D~~G~G~S~~~~-~~~s~~~~a~dl~~ll~~l~ 492 (691)
+..+..++ .+|.+++.||+|.+.-.|..++..|... ..+|+++|+||||.|...+ .+++.+.+++|+.++++.+-
T Consensus 62 ~n~Y~t~~~~t~gpil~l~HG~G~S~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~f 141 (343)
T KOG2564|consen 62 FNVYLTLPSATEGPILLLLHGGGSSALSFAIFASELKSKIRCRCLALDLRGHGETKVENEDDLSLETMSKDFGAVIKELF 141 (343)
T ss_pred EEEEEecCCCCCccEEEEeecCcccchhHHHHHHHHHhhcceeEEEeeccccCccccCChhhcCHHHHHHHHHHHHHHHh
Confidence 44444444 5899999999999999999999998764 4688999999999998644 57999999999999999874
Q ss_pred C---cCEEEEEeChhHHHHHHHHHh--CccccceEEEecCCCCCC-CchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHH
Q 005554 493 G---EPVHLIGNSIGGYFVAIVACL--WPAVVKSVVLINSAGNVI-PEYSFLQFSNERQASGPIRLGAQLLLFYLRLNIS 566 (691)
Q Consensus 493 ~---~~v~lvGhS~GG~ial~~A~~--~P~~V~~lVll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (691)
. .+++||||||||.|+...|.. -|. +.|+++++-.-... ............++..+..+...+.........+
T Consensus 142 ge~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viDVVEgtAmeAL~~m~~fL~~rP~~F~Si~~Ai~W~v~sg~~R 220 (343)
T KOG2564|consen 142 GELPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVIDVVEGTAMEALNSMQHFLRNRPKSFKSIEDAIEWHVRSGQLR 220 (343)
T ss_pred ccCCCceEEEeccccchhhhhhhhhhhchh-hhceEEEEEechHHHHHHHHHHHHHhcCCccccchhhHHHHHhcccccc
Confidence 3 679999999999999887764 465 99999998641100 0000011111111222211111111000000000
Q ss_pred HHHHhhcCCCCccccHHHH-HHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHH
Q 005554 567 NFVKQCYPTRRERADDWLI-SEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFK 645 (691)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~ 645 (691)
........ -+..+....- ..+.....-......+..++. .+....-...+|-|+|....|.+-..- ..-
T Consensus 221 n~~SArVs-mP~~~~~~~eGh~yvwrtdL~kte~YW~gWF~-----gLS~~Fl~~p~~klLilAg~d~LDkdL----tiG 290 (343)
T KOG2564|consen 221 NRDSARVS-MPSQLKQCEEGHCYVWRTDLEKTEQYWKGWFK-----GLSDKFLGLPVPKLLILAGVDRLDKDL----TIG 290 (343)
T ss_pred ccccceEe-cchheeeccCCCcEEEEeeccccchhHHHHHh-----hhhhHhhCCCccceeEEecccccCcce----eee
Confidence 00000000 0000000000 000000000000111111111 112233456788888888877653221 112
Q ss_pred HhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhhh
Q 005554 646 EHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 646 ~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~ 682 (691)
++....++.++ .+||+.+.+.|..++..+..|+.++.
T Consensus 291 QMQGk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~Rn~ 328 (343)
T KOG2564|consen 291 QMQGKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIRNR 328 (343)
T ss_pred eeccceeeeeecccCceeccCCcchHHHHHHHHHhhhc
Confidence 23345667777 99999999999999999999998875
No 70
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.70 E-value=2.4e-15 Score=179.72 Aligned_cols=255 Identities=19% Similarity=0.226 Sum_probs=150.6
Q ss_pred CCCeEEEEcCCCCChHHHHHH-----HHHHhcCCCEEEEeCCCCCcCCCCCCc--CCCHHHHHHHHHHHHHH---hCCcC
Q 005554 426 EGPAILLVHGFGAFLEHYRDN-----IYDIADGGNRVWAITLLGFGRSEKPNI--VYTELMWSELLRDFTVE---VVGEP 495 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~-----~~~L~~~G~~Vi~~D~~G~G~S~~~~~--~~s~~~~a~dl~~ll~~---l~~~~ 495 (691)
.+++|||+||++.+...|+.. ++.|.++||+|+++|+ |.++.+.. ..++.+++..+.+.++. +..++
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~---G~~~~~~~~~~~~l~~~i~~l~~~l~~v~~~~~~~ 142 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDF---GSPDKVEGGMERNLADHVVALSEAIDTVKDVTGRD 142 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcC---CCCChhHcCccCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 368999999999999999864 8899999999999994 66665432 35677776666666554 34578
Q ss_pred EEEEEeChhHHHHHHHHHhC-ccccceEEEecCCCCCCCchh-hhhhh--hh---------hhcCCh----hhhhhHHHH
Q 005554 496 VHLIGNSIGGYFVAIVACLW-PAVVKSVVLINSAGNVIPEYS-FLQFS--NE---------RQASGP----IRLGAQLLL 558 (691)
Q Consensus 496 v~lvGhS~GG~ial~~A~~~-P~~V~~lVll~~~~~~~~~~~-~~~~~--~~---------~~~~~~----~~~~~~~~~ 558 (691)
++++||||||.+++.+++.+ +++|+++|+++++........ ..... .. .....+ .......+.
T Consensus 143 v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~ 222 (994)
T PRK07868 143 VHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDIPGWMARTGFQMLD 222 (994)
T ss_pred eEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCCCHHHHHHHHHhcC
Confidence 99999999999999998765 558999999888754322100 00000 00 000000 000000000
Q ss_pred HHH-HhhHHHHHHhhcCCCCccccHHHHHHHHHhc---C--CcchHHHHHHHhccccC----cch---HhhhcCCCCcEE
Q 005554 559 FYL-RLNISNFVKQCYPTRRERADDWLISEMLRAS---Y--DPGVLVVLESIFSFKLS----LPL---NYLLEGFKEKVL 625 (691)
Q Consensus 559 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~----~~~---~~~l~~i~~PvL 625 (691)
... ......++..... .....+++....+.... . ..........+...... ... ...+.+|++|+|
T Consensus 223 p~~~~~~~~~~~~~l~~-~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L 301 (994)
T PRK07868 223 PVKTAKARVDFLRQLHD-REALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQMVTLADITCPVL 301 (994)
T ss_pred hhHHHHHHHHHHHhcCc-hhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCEEcchhhCCCCEE
Confidence 000 0011112222211 11111111112221111 1 11122233333221110 011 124789999999
Q ss_pred EEEeCCCCCCChhHHHHHHHHhCCCcEE-EEe-CCCCCCCcc---ChHHHHHHHHHHHHhhhCCC
Q 005554 626 IIQGIKDPISDSKSKVAMFKEHCAGIVI-REL-DAGHCPHDE---KPEEVNSIISEWIVTIESKV 685 (691)
Q Consensus 626 iI~G~~D~~vp~~~~~~~~~~~~~~~~~-~~~-~~GH~~~~e---~pe~v~~~I~~fL~~~~~~~ 685 (691)
+|+|++|.++|++. .+.+.+..++.++ .++ ++||+.++- .++++...|.+||++.....
T Consensus 302 ~i~G~~D~ivp~~~-~~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~~~ 365 (994)
T PRK07868 302 AFVGEVDDIGQPAS-VRGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEGDG 365 (994)
T ss_pred EEEeCCCCCCCHHH-HHHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhccCC
Confidence 99999999999985 4556677788886 444 899987764 48999999999999876543
No 71
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.67 E-value=2e-15 Score=138.39 Aligned_cols=144 Identities=26% Similarity=0.347 Sum_probs=109.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHH
Q 005554 429 AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFV 508 (691)
Q Consensus 429 ~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ia 508 (691)
+||++||++++...|..+++.|+++||.|+++|+||+|.+.... ..+++.+++. ....+.++++++|||+||.++
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~i~l~G~S~Gg~~a 75 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPGHGDSDGAD---AVERVLADIR--AGYPDPDRIILIGHSMGGAIA 75 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTTSTTSHHSH---HHHHHHHHHH--HHHCTCCEEEEEEETHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCCccchhH---HHHHHHHHHH--hhcCCCCcEEEEEEccCcHHH
Confidence 68999999999999999999999999999999999999873211 2222222222 112356889999999999999
Q ss_pred HHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHHHHHHH
Q 005554 509 AIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEM 588 (691)
Q Consensus 509 l~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (691)
+.++.++ .+|+++|++++. +.
T Consensus 76 ~~~~~~~-~~v~~~v~~~~~----~~------------------------------------------------------ 96 (145)
T PF12695_consen 76 ANLAARN-PRVKAVVLLSPY----PD------------------------------------------------------ 96 (145)
T ss_dssp HHHHHHS-TTESEEEEESES----SG------------------------------------------------------
T ss_pred HHHhhhc-cceeEEEEecCc----cc------------------------------------------------------
Confidence 9999998 679999999872 00
Q ss_pred HHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCCCC
Q 005554 589 LRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-DAGHC 661 (691)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~ 661 (691)
...+...+.|+++++|++|.+++.+...+.+++...+.++.++ +++|+
T Consensus 97 -------------------------~~~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 97 -------------------------SEDLAKIRIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp -------------------------CHHHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred -------------------------hhhhhccCCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 0113345669999999999999998777777777667788887 89995
No 72
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.65 E-value=3.1e-14 Score=137.40 Aligned_cols=111 Identities=20% Similarity=0.204 Sum_probs=98.1
Q ss_pred EEEEeCCC---CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC-cCCCHHHHHHHHHHHHHHhCC-
Q 005554 419 QYTVAGKE---GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVVG- 493 (691)
Q Consensus 419 ~y~~~g~~---~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-~~~s~~~~a~dl~~ll~~l~~- 493 (691)
-|.+..++ ..+||=+||-+++...|+++...|.+.|+|+|.+++||+|.++.+. ..++.++-...+.++++.+++
T Consensus 24 ~y~D~~~~gs~~gTVv~~hGsPGSH~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~ 103 (297)
T PF06342_consen 24 VYEDSLPSGSPLGTVVAFHGSPGSHNDFKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNFVNALLDELGIK 103 (297)
T ss_pred EEEecCCCCCCceeEEEecCCCCCccchhhhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHHHHHHHHHcCCC
Confidence 35555443 2389999999999999999999999999999999999999998755 578999999999999999998
Q ss_pred cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCC
Q 005554 494 EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNV 531 (691)
Q Consensus 494 ~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~ 531 (691)
++++.+|||.|+-.|+.+|..+| +.++++++|++..
T Consensus 104 ~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~G~r 139 (297)
T PF06342_consen 104 GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPPGLR 139 (297)
T ss_pred CceEEEEeccchHHHHHHHhcCc--cceEEEecCCccc
Confidence 56889999999999999999996 6799999998654
No 73
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.64 E-value=1.4e-14 Score=142.08 Aligned_cols=257 Identities=16% Similarity=0.127 Sum_probs=149.2
Q ss_pred EEEEEcCeEEEEEEeCCC---CCeEEEEcCCCCChHH-HHHH-----HHHHhcCCCEEEEeCCCCCcCCCC--CCc--CC
Q 005554 409 RIWRWNGYQIQYTVAGKE---GPAILLVHGFGAFLEH-YRDN-----IYDIADGGNRVWAITLLGFGRSEK--PNI--VY 475 (691)
Q Consensus 409 ~~~~~~g~~i~y~~~g~~---~p~VlliHG~~~~~~~-~~~~-----~~~L~~~G~~Vi~~D~~G~G~S~~--~~~--~~ 475 (691)
+.++..-..+++...|.. +|++|-.|-.|.+... |..+ +..+.++ |.|+-+|.||+..-.. +.+ ..
T Consensus 2 h~v~t~~G~v~V~v~G~~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~-f~i~Hi~aPGqe~ga~~~p~~y~yP 80 (283)
T PF03096_consen 2 HDVETPYGSVHVTVQGDPKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQN-FCIYHIDAPGQEEGAATLPEGYQYP 80 (283)
T ss_dssp EEEEETTEEEEEEEESS--TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHTT-SEEEEEE-TTTSTT-----TT----
T ss_pred ceeccCceEEEEEEEecCCCCCceEEEeccccccchHHHHHHhcchhHHHHhhc-eEEEEEeCCCCCCCccccccccccc
Confidence 456667778888888853 7899999999988655 5543 4556665 9999999999976443 332 45
Q ss_pred CHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhH
Q 005554 476 TELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQ 555 (691)
Q Consensus 476 s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
|+++++++|.+++++++++.++.+|-..||.|..++|..||++|.|+||+++.+... .|..+....
T Consensus 81 smd~LAe~l~~Vl~~f~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~--------------gw~Ew~~~K 146 (283)
T PF03096_consen 81 SMDQLAEMLPEVLDHFGLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAA--------------GWMEWFYQK 146 (283)
T ss_dssp -HHHHHCTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S-----------------HHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCc--------------cHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999975421 122222222
Q ss_pred HHHHH------HHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCC-cchHHHHHHHhccccCcchHhhhcCCCCcEEEEE
Q 005554 556 LLLFY------LRLNISNFVKQCYPTRRERADDWLISEMLRASYD-PGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQ 628 (691)
Q Consensus 556 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~ 628 (691)
..... .......++...+.........++++.+...... .+.......+..+..+.++....+...||+|+|.
T Consensus 147 ~~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvv 226 (283)
T PF03096_consen 147 LSSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVV 226 (283)
T ss_dssp HH-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEE
T ss_pred HhcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEE
Confidence 11100 0111122222333322222223344333332211 1112222222233344555556677889999999
Q ss_pred eCCCCCCChhHHHHHHHHhCC-CcEEEEe-CCCCCCCccChHHHHHHHHHHHHhhh
Q 005554 629 GIKDPISDSKSKVAMFKEHCA-GIVIREL-DAGHCPHDEKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 629 G~~D~~vp~~~~~~~~~~~~~-~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~ 682 (691)
|+..+.... ..+...++-| +..+..+ +||=++..|+|+.+++.+.-|++...
T Consensus 227 G~~Sp~~~~--vv~~ns~Ldp~~ttllkv~dcGglV~eEqP~klaea~~lFlQG~G 280 (283)
T PF03096_consen 227 GDNSPHVDD--VVEMNSKLDPTKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQGMG 280 (283)
T ss_dssp ETTSTTHHH--HHHHHHHS-CCCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHHTT
T ss_pred ecCCcchhh--HHHHHhhcCcccceEEEecccCCcccccCcHHHHHHHHHHHccCC
Confidence 999987543 4565556554 4456666 89999999999999999999998753
No 74
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.63 E-value=4.2e-15 Score=148.52 Aligned_cols=102 Identities=22% Similarity=0.195 Sum_probs=87.5
Q ss_pred CCeEEEEcCCCCC----hHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHH---HHhCCcCEEEE
Q 005554 427 GPAILLVHGFGAF----LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFT---VEVVGEPVHLI 499 (691)
Q Consensus 427 ~p~VlliHG~~~~----~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll---~~l~~~~v~lv 499 (691)
.++|||+||++.. ...|..+++.|+++||+|+++|+||||.|.......+++.+.+|+..++ +..+.++++|+
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~~~~v~Lv 104 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQGHPPVTLW 104 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4689999999864 3567778899998999999999999999987655668888888877754 44456889999
Q ss_pred EeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 500 GNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 500 GhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
||||||.+++.+|.++|++++++|+++|.
T Consensus 105 G~SmGG~vAl~~A~~~p~~v~~lVL~~P~ 133 (266)
T TIGR03101 105 GLRLGALLALDAANPLAAKCNRLVLWQPV 133 (266)
T ss_pred EECHHHHHHHHHHHhCccccceEEEeccc
Confidence 99999999999999999999999999986
No 75
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.62 E-value=2e-13 Score=131.35 Aligned_cols=257 Identities=15% Similarity=0.126 Sum_probs=174.0
Q ss_pred eEEEEEEEcCeEEEEEEeCCC---CCeEEEEcCCCCChHH-HHH-----HHHHHhcCCCEEEEeCCCCCcCCCC--CCc-
Q 005554 406 YSTRIWRWNGYQIQYTVAGKE---GPAILLVHGFGAFLEH-YRD-----NIYDIADGGNRVWAITLLGFGRSEK--PNI- 473 (691)
Q Consensus 406 ~~~~~~~~~g~~i~y~~~g~~---~p~VlliHG~~~~~~~-~~~-----~~~~L~~~G~~Vi~~D~~G~G~S~~--~~~- 473 (691)
.+.+-++..-..+++...|.. +|++|-.|..|.+... |.. -+..+.++ |.|+-+|.|||-.-.. +.+
T Consensus 22 ~~e~~V~T~~G~v~V~V~Gd~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~~p~~y 100 (326)
T KOG2931|consen 22 CQEHDVETAHGVVHVTVYGDPKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPSFPEGY 100 (326)
T ss_pred ceeeeeccccccEEEEEecCCCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCccCCCCC
Confidence 344555555567888888753 6899999999987654 544 35567777 9999999999965433 332
Q ss_pred -CCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhh
Q 005554 474 -VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRL 552 (691)
Q Consensus 474 -~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (691)
-.|+++++++|..++++++.+.++-+|...|++|..++|..||++|.++||+++.+.. ..|+.+.
T Consensus 101 ~yPsmd~LAd~l~~VL~~f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a--------------~gwiew~ 166 (326)
T KOG2931|consen 101 PYPSMDDLADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCA--------------KGWIEWA 166 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCC--------------chHHHHH
Confidence 3489999999999999999999999999999999999999999999999999986432 2333333
Q ss_pred hhHHHHHH------HHhhHHHHHHhhcCCCCccccHHHHHHHHHh---cCC-cchHHHHHHHhccccCcchHhhhc----
Q 005554 553 GAQLLLFY------LRLNISNFVKQCYPTRRERADDWLISEMLRA---SYD-PGVLVVLESIFSFKLSLPLNYLLE---- 618 (691)
Q Consensus 553 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~l~---- 618 (691)
.......+ ......-++...+.........++++++... ... .+....++++. .+.|+.....
T Consensus 167 ~~K~~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn---~R~DL~~~r~~~~~ 243 (326)
T KOG2931|consen 167 YNKVSSNLLYYYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYN---GRRDLSIERPKLGT 243 (326)
T ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhc---CCCCccccCCCcCc
Confidence 33332211 1222333444555544444455555554433 222 22222333332 2223222222
Q ss_pred CCCCcEEEEEeCCCCCCChhHHHHHHHHhCC-CcEEEEe-CCCCCCCccChHHHHHHHHHHHHhhh
Q 005554 619 GFKEKVLIIQGIKDPISDSKSKVAMFKEHCA-GIVIREL-DAGHCPHDEKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 619 ~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~-~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~ 682 (691)
.++||+|++.|+..+.+.. ..+.-.++-| +..+..+ ++|-.+..++|..+++.+.-|++...
T Consensus 244 tlkc~vllvvGd~Sp~~~~--vv~~n~~Ldp~~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG~G 307 (326)
T KOG2931|consen 244 TLKCPVLLVVGDNSPHVSA--VVECNSKLDPTYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQGMG 307 (326)
T ss_pred cccccEEEEecCCCchhhh--hhhhhcccCcccceEEEEcccCCcccccCchHHHHHHHHHHccCC
Confidence 5569999999999987653 3343333333 4556666 99999999999999999999999754
No 76
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.62 E-value=1.8e-14 Score=137.49 Aligned_cols=192 Identities=19% Similarity=0.234 Sum_probs=130.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhc-CCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhC--CcCEEEEEeCh
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIAD-GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV--GEPVHLIGNSI 503 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~-~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~--~~~v~lvGhS~ 503 (691)
.++||++||..........+...|.. -+++|+++|+.|+|.|.+.+......+-++.+-+++++-. .++++|+|+|+
T Consensus 60 ~~~lly~hGNa~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~~~g~~~~Iil~G~Si 139 (258)
T KOG1552|consen 60 HPTLLYSHGNAADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRNRYGSPERIILYGQSI 139 (258)
T ss_pred ceEEEEcCCcccchHHHHHHHHHHhhcccceEEEEecccccccCCCcccccchhhHHHHHHHHHhhcCCCceEEEEEecC
Confidence 58999999997776655566666655 2699999999999999986644443333334444444433 47899999999
Q ss_pred hHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHH
Q 005554 504 GGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDW 583 (691)
Q Consensus 504 GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (691)
|+..++.+|+++| +.++||.+|.... ++.+++..... +
T Consensus 140 Gt~~tv~Lasr~~--~~alVL~SPf~S~-------------------------------------~rv~~~~~~~~---~ 177 (258)
T KOG1552|consen 140 GTVPTVDLASRYP--LAAVVLHSPFTSG-------------------------------------MRVAFPDTKTT---Y 177 (258)
T ss_pred CchhhhhHhhcCC--cceEEEeccchhh-------------------------------------hhhhccCcceE---E
Confidence 9999999999999 9999999985211 00011100000 0
Q ss_pred HHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcE-EEEeCCCCCC
Q 005554 584 LISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIV-IRELDAGHCP 662 (691)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~-~~~~~~GH~~ 662 (691)
.. . .....+.++.|+||+|++||++|.+++.....++++......+ +.+.++||.-
T Consensus 178 ~~-----------------d------~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~epl~v~g~gH~~ 234 (258)
T KOG1552|consen 178 CF-----------------D------AFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEKVEPLWVKGAGHND 234 (258)
T ss_pred ee-----------------c------cccccCcceeccCCEEEEecccCceecccccHHHHHhccccCCCcEEecCCCcc
Confidence 00 0 0000235678999999999999999999866666655544434 4444999976
Q ss_pred CccChHHHHHHHHHHHHhhhCC
Q 005554 663 HDEKPEEVNSIISEWIVTIESK 684 (691)
Q Consensus 663 ~~e~pe~v~~~I~~fL~~~~~~ 684 (691)
..- ..++.+.+..|+......
T Consensus 235 ~~~-~~~yi~~l~~f~~~~~~~ 255 (258)
T KOG1552|consen 235 IEL-YPEYIEHLRRFISSVLPS 255 (258)
T ss_pred ccc-CHHHHHHHHHHHHHhccc
Confidence 544 457779999999876654
No 77
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.60 E-value=9.1e-14 Score=137.02 Aligned_cols=249 Identities=16% Similarity=0.158 Sum_probs=135.9
Q ss_pred CCeEEEEcCCCCC--hHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHh----CCcCEEEEE
Q 005554 427 GPAILLVHGFGAF--LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV----VGEPVHLIG 500 (691)
Q Consensus 427 ~p~VlliHG~~~~--~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l----~~~~v~lvG 500 (691)
+|.||++||+.++ +...+.+++.+.++||.|+++++|||+.+........-.-+.+|+..+++.+ ...++..+|
T Consensus 75 ~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r~~~avG 154 (345)
T COG0429 75 KPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPRPLYAVG 154 (345)
T ss_pred CceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCCceEEEE
Confidence 7899999998554 3344568888999999999999999998875332221122235555555443 457899999
Q ss_pred eChhHHHHHHHHHhCcc--ccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCc
Q 005554 501 NSIGGYFVAIVACLWPA--VVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRE 578 (691)
Q Consensus 501 hS~GG~ial~~A~~~P~--~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (691)
.|+||.+...+..+.-+ .+.+.+.++.+... ..........+...+...............-+...-+..+.
T Consensus 155 ~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl------~~~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~ 228 (345)
T COG0429 155 FSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDL------EACAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPG 228 (345)
T ss_pred ecccHHHHHHHHHhhccCcccceeeeeeCHHHH------HHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCc
Confidence 99999655555554322 35556655554221 11111111111112222222222222222222222111111
Q ss_pred cccHHHHHHHHH-hcCCcch---HHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEE
Q 005554 579 RADDWLISEMLR-ASYDPGV---LVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIR 654 (691)
Q Consensus 579 ~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~ 654 (691)
.... ..+.... ..++... ...+.....+....+....+.+|.+|+|+|+..+|++++++..-+......|++.+.
T Consensus 229 ~~~~-~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~~np~v~l~ 307 (345)
T COG0429 229 TVLA-AIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKIRKPTLIINAKDDPFMPPEVIPKLQEMLNPNVLLQ 307 (345)
T ss_pred HHHH-HHHhhchHHhccceeeecccCCCcHHHHHHhccccccccccccceEEEecCCCCCCChhhCCcchhcCCCceEEE
Confidence 1111 1111000 0000000 000011111222223345788999999999999999999974433333366888888
Q ss_pred Ee-CCCCCCCcc----ChH-HHHHHHHHHHHhhh
Q 005554 655 EL-DAGHCPHDE----KPE-EVNSIISEWIVTIE 682 (691)
Q Consensus 655 ~~-~~GH~~~~e----~pe-~v~~~I~~fL~~~~ 682 (691)
+. .+||..++. +|. ..-+.|.+|++...
T Consensus 308 ~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 308 LTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred eecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 88 799988887 343 56677788887654
No 78
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.56 E-value=6e-13 Score=136.38 Aligned_cols=243 Identities=16% Similarity=0.189 Sum_probs=131.2
Q ss_pred CCCeEEEEcCCCCC-hHHH-HHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHH----HhCCcCEEEE
Q 005554 426 EGPAILLVHGFGAF-LEHY-RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV----EVVGEPVHLI 499 (691)
Q Consensus 426 ~~p~VlliHG~~~~-~~~~-~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~----~l~~~~v~lv 499 (691)
..|+||++||+.++ .+.| +.++..+.+.||+|++++.||+|.|.-.....-...+.+|+.++++ .....++..+
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a~l~av 203 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQAPLFAV 203 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 36999999998554 3444 5678888888999999999999998764432212223445555554 4455789999
Q ss_pred EeChhHHHHHHHHHhCcc---ccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHh----hHHHHHHhh
Q 005554 500 GNSIGGYFVAIVACLWPA---VVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRL----NISNFVKQC 572 (691)
Q Consensus 500 GhS~GG~ial~~A~~~P~---~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 572 (691)
|.||||++.+.|.++..+ .+.++++.+|. +.. .............+........... ....++...
T Consensus 204 G~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pw-d~~------~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~ 276 (409)
T KOG1838|consen 204 GFSMGGNILTNYLGEEGDNTPLIAAVAVCNPW-DLL------AASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDP 276 (409)
T ss_pred EecchHHHHHHHhhhccCCCCceeEEEEeccc-hhh------hhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhcc
Confidence 999999999999887543 34555555553 211 0011111111111111111111110 000011100
Q ss_pred cCCC---CccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCC
Q 005554 573 YPTR---RERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCA 649 (691)
Q Consensus 573 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~ 649 (691)
.... ..+...++-+.+....+. + .....+....+....+.+|++|+|+|++.+|+++|++..-.......|
T Consensus 277 vd~d~~~~~~SvreFD~~~t~~~~g--f----~~~deYY~~aSs~~~v~~I~VP~L~ina~DDPv~p~~~ip~~~~~~np 350 (409)
T KOG1838|consen 277 VDFDVILKSRSVREFDEALTRPMFG--F----KSVDEYYKKASSSNYVDKIKVPLLCINAADDPVVPEEAIPIDDIKSNP 350 (409)
T ss_pred chhhhhhhcCcHHHHHhhhhhhhcC--C----CcHHHHHhhcchhhhcccccccEEEEecCCCCCCCcccCCHHHHhcCC
Confidence 0000 000000110111111100 0 011112222344557889999999999999999998644333444557
Q ss_pred CcEEEEe-CCCCCCCccC----hHHHHHH-HHHHHHhh
Q 005554 650 GIVIREL-DAGHCPHDEK----PEEVNSI-ISEWIVTI 681 (691)
Q Consensus 650 ~~~~~~~-~~GH~~~~e~----pe~v~~~-I~~fL~~~ 681 (691)
+.-+++. .+||..++|. +....+. +.+|+...
T Consensus 351 ~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 351 NVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred cEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 7777777 7999999987 2223333 66666543
No 79
>PLN00021 chlorophyllase
Probab=99.56 E-value=1.7e-13 Score=140.81 Aligned_cols=100 Identities=19% Similarity=0.147 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHH---HHHHHHHHHHH-------hCCcC
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELM---WSELLRDFTVE-------VVGEP 495 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~---~a~dl~~ll~~-------l~~~~ 495 (691)
..|+|||+||++.+...|..+++.|+++||.|+++|++|++.+.. ...+++ +.+.+.+.++. .+.++
T Consensus 51 ~~PvVv~lHG~~~~~~~y~~l~~~Las~G~~VvapD~~g~~~~~~---~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~ 127 (313)
T PLN00021 51 TYPVLLFLHGYLLYNSFYSQLLQHIASHGFIVVAPQLYTLAGPDG---TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSK 127 (313)
T ss_pred CCCEEEEECCCCCCcccHHHHHHHHHhCCCEEEEecCCCcCCCCc---hhhHHHHHHHHHHHHhhhhhhcccccccChhh
Confidence 368999999999999999999999999999999999999754321 112222 22222222222 23367
Q ss_pred EEEEEeChhHHHHHHHHHhCcc-----ccceEEEecCC
Q 005554 496 VHLIGNSIGGYFVAIVACLWPA-----VVKSVVLINSA 528 (691)
Q Consensus 496 v~lvGhS~GG~ial~~A~~~P~-----~V~~lVll~~~ 528 (691)
++++||||||.+++.+|..+++ +++++|+++|.
T Consensus 128 v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv 165 (313)
T PLN00021 128 LALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPV 165 (313)
T ss_pred eEEEEECcchHHHHHHHhhccccccccceeeEEeeccc
Confidence 9999999999999999999874 58999999986
No 80
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.55 E-value=4.5e-13 Score=127.12 Aligned_cols=226 Identities=13% Similarity=0.096 Sum_probs=148.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHH-HhCCcCEEEEEeChhH
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV-EVVGEPVHLIGNSIGG 505 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~-~l~~~~v~lvGhS~GG 505 (691)
+..|+++|=.|+++..|+.....|... +.++++++||+|.--......+++++++.|..-+. -+..+++.++||||||
T Consensus 7 ~~~L~cfP~AGGsa~~fr~W~~~lp~~-iel~avqlPGR~~r~~ep~~~di~~Lad~la~el~~~~~d~P~alfGHSmGa 85 (244)
T COG3208 7 RLRLFCFPHAGGSASLFRSWSRRLPAD-IELLAVQLPGRGDRFGEPLLTDIESLADELANELLPPLLDAPFALFGHSMGA 85 (244)
T ss_pred CceEEEecCCCCCHHHHHHHHhhCCch-hheeeecCCCcccccCCcccccHHHHHHHHHHHhccccCCCCeeecccchhH
Confidence 568999999999999999999988764 99999999999987666667789999999998887 4555789999999999
Q ss_pred HHHHHHHHhCcc---ccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccH
Q 005554 506 YFVAIVACLWPA---VVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADD 582 (691)
Q Consensus 506 ~ial~~A~~~P~---~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (691)
++|.++|.+... .+.++.+.+......... ..+..... ..+-..+...-...+....+
T Consensus 86 ~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~-----------~~i~~~~D--------~~~l~~l~~lgG~p~e~led 146 (244)
T COG3208 86 MLAFEVARRLERAGLPPRALFISGCRAPHYDRG-----------KQIHHLDD--------ADFLADLVDLGGTPPELLED 146 (244)
T ss_pred HHHHHHHHHHHHcCCCcceEEEecCCCCCCccc-----------CCccCCCH--------HHHHHHHHHhCCCChHHhcC
Confidence 999999987532 255666665532211000 00000000 01111111222212122222
Q ss_pred HHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEeCCCCCC
Q 005554 583 WLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIRELDAGHCP 662 (691)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~GH~~ 662 (691)
.....++... ...-+...-.+... .-..+.||+.++.|++|..+..+....+-+......++.++++||+.
T Consensus 147 ~El~~l~LPi----lRAD~~~~e~Y~~~-----~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f~l~~fdGgHFf 217 (244)
T COG3208 147 PELMALFLPI----LRADFRALESYRYP-----PPAPLACPIHAFGGEKDHEVSRDELGAWREHTKGDFTLRVFDGGHFF 217 (244)
T ss_pred HHHHHHHHHH----HHHHHHHhcccccC-----CCCCcCcceEEeccCcchhccHHHHHHHHHhhcCCceEEEecCccee
Confidence 2222221111 11101111111111 12578999999999999999998766666666678889999999999
Q ss_pred CccChHHHHHHHHHHHHhh
Q 005554 663 HDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 663 ~~e~pe~v~~~I~~fL~~~ 681 (691)
..++.+++.+.|.+.+...
T Consensus 218 l~~~~~~v~~~i~~~l~~~ 236 (244)
T COG3208 218 LNQQREEVLARLEQHLAHH 236 (244)
T ss_pred hhhhHHHHHHHHHHHhhhh
Confidence 9999999999999998643
No 81
>PLN02442 S-formylglutathione hydrolase
Probab=99.55 E-value=4.8e-13 Score=136.81 Aligned_cols=117 Identities=19% Similarity=0.167 Sum_probs=82.7
Q ss_pred cCeEEEEEEeC------CCCCeEEEEcCCCCChHHHHH---HHHHHhcCCCEEEEeCCCCCcC-----CCC---------
Q 005554 414 NGYQIQYTVAG------KEGPAILLVHGFGAFLEHYRD---NIYDIADGGNRVWAITLLGFGR-----SEK--------- 470 (691)
Q Consensus 414 ~g~~i~y~~~g------~~~p~VlliHG~~~~~~~~~~---~~~~L~~~G~~Vi~~D~~G~G~-----S~~--------- 470 (691)
-|.++.|..+- .+.|+|+|+||++++...|.. +...+...|+.|+++|..++|. +..
T Consensus 28 l~~~~~~~vy~P~~~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~~ 107 (283)
T PLN02442 28 LGCSMTFSVYFPPASDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAGF 107 (283)
T ss_pred cCCceEEEEEcCCcccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcce
Confidence 45566666552 236899999999988776643 3455667799999999877661 110
Q ss_pred ----CC--------cCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 471 ----PN--------IVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 471 ----~~--------~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
.. ..+-.+++.+.+....+.++.++++++||||||..++.++.++|+++++++++++...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~ 179 (283)
T PLN02442 108 YLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIAN 179 (283)
T ss_pred eeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccC
Confidence 00 0112333444444444556778899999999999999999999999999999998643
No 82
>PRK11460 putative hydrolase; Provisional
Probab=99.51 E-value=8.8e-13 Score=130.72 Aligned_cols=171 Identities=16% Similarity=0.108 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCC-----------CcCCCH---HHHHHHHHH----H
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP-----------NIVYTE---LMWSELLRD----F 487 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~-----------~~~~s~---~~~a~dl~~----l 487 (691)
..|+|||+||+|++...|..+++.|.+.++.+..++.+|...+... ...... .+..+.+.+ +
T Consensus 15 ~~~~vIlLHG~G~~~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 94 (232)
T PRK11460 15 AQQLLLLFHGVGDNPVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETVRYW 94 (232)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999876655555555554322110 001111 122222222 2
Q ss_pred HHHhCC--cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhH
Q 005554 488 TVEVVG--EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNI 565 (691)
Q Consensus 488 l~~l~~--~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (691)
.+..+. ++++++|||+||.+++.++..+|+.+.++|.+++... .
T Consensus 95 ~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~---~------------------------------- 140 (232)
T PRK11460 95 QQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA---S------------------------------- 140 (232)
T ss_pred HHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc---c-------------------------------
Confidence 333343 5799999999999999999999988888887765200 0
Q ss_pred HHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHH
Q 005554 566 SNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFK 645 (691)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~ 645 (691)
.+ . ....++|+++++|++|.++|.+...+..+
T Consensus 141 -------~~---~--------------------------------------~~~~~~pvli~hG~~D~vvp~~~~~~~~~ 172 (232)
T PRK11460 141 -------LP---E--------------------------------------TAPTATTIHLIHGGEDPVIDVAHAVAAQE 172 (232)
T ss_pred -------cc---c--------------------------------------cccCCCcEEEEecCCCCccCHHHHHHHHH
Confidence 00 0 00126799999999999999886544433
Q ss_pred H---hCCCcEEEEe-CCCCCCCccChHHHHHHHHHHH
Q 005554 646 E---HCAGIVIREL-DAGHCPHDEKPEEVNSIISEWI 678 (691)
Q Consensus 646 ~---~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL 678 (691)
. ...++++++. ++||.+..+.-+.+.+.+.++|
T Consensus 173 ~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l 209 (232)
T PRK11460 173 ALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTV 209 (232)
T ss_pred HHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHc
Confidence 3 2345677765 8999986444444444444443
No 83
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.51 E-value=2.2e-13 Score=124.50 Aligned_cols=219 Identities=12% Similarity=0.086 Sum_probs=138.3
Q ss_pred EEEEEEEcCeEEEEEE--eCCCCCeEEEEcCCCCChHHHHHHHHHHh-cCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHH
Q 005554 407 STRIWRWNGYQIQYTV--AGKEGPAILLVHGFGAFLEHYRDNIYDIA-DGGNRVWAITLLGFGRSEKPNIVYTELMWSEL 483 (691)
Q Consensus 407 ~~~~~~~~g~~i~y~~--~g~~~p~VlliHG~~~~~~~~~~~~~~L~-~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~d 483 (691)
.+...+-|.++++-.. ..++.|+|+++||..++.....+++.-+- .-+.+|+.+++||+|.|.+.+..-.+ .-|
T Consensus 56 ~i~l~T~D~vtL~a~~~~~E~S~pTlLyfh~NAGNmGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~GspsE~GL---~lD 132 (300)
T KOG4391|consen 56 RIELRTRDKVTLDAYLMLSESSRPTLLYFHANAGNMGHRLPIARVFYVNLKMNVLIVSYRGYGKSEGSPSEEGL---KLD 132 (300)
T ss_pred EEEEEcCcceeEeeeeecccCCCceEEEEccCCCcccchhhHHHHHHHHcCceEEEEEeeccccCCCCccccce---ecc
Confidence 3445555777776432 23358999999999998877767666543 44789999999999999875522221 222
Q ss_pred HHHHHHHh------CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHH
Q 005554 484 LRDFTVEV------VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLL 557 (691)
Q Consensus 484 l~~ll~~l------~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (691)
-..+++++ ...++++.|-|+||.+|+.+|++..+++.++|+-++..... . . ..+.+..+
T Consensus 133 s~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp-~--------~-~i~~v~p~----- 197 (300)
T KOG4391|consen 133 SEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIP-H--------M-AIPLVFPF----- 197 (300)
T ss_pred HHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccch-h--------h-hhheeccc-----
Confidence 22333332 23679999999999999999999999999999988752210 0 0 00000000
Q ss_pred HHHHHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCCh
Q 005554 558 LFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDS 637 (691)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~ 637 (691)
....+..+. .+. .+. ....+..-..|.|+|.|..|.++||
T Consensus 198 ---~~k~i~~lc---------------~kn----------------~~~------S~~ki~~~~~P~LFiSGlkDelVPP 237 (300)
T KOG4391|consen 198 ---PMKYIPLLC---------------YKN----------------KWL------SYRKIGQCRMPFLFISGLKDELVPP 237 (300)
T ss_pred ---hhhHHHHHH---------------HHh----------------hhc------chhhhccccCceEEeecCccccCCc
Confidence 000000000 000 000 0012345578999999999999999
Q ss_pred hHHHHHHHHhCC-CcEEEEe-CCCCCCCccChHHHHHHHHHHHHhhhCC
Q 005554 638 KSKVAMFKEHCA-GIVIREL-DAGHCPHDEKPEEVNSIISEWIVTIESK 684 (691)
Q Consensus 638 ~~~~~~~~~~~~-~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~~~ 684 (691)
..+.+.+..... +.++... ++.|.-.+- -+...++|.+||.+....
T Consensus 238 ~~Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i-~dGYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 238 VMMRQLYELCPSRTKRLAEFPDGTHNDTWI-CDGYFQAIEDFLAEVVKS 285 (300)
T ss_pred HHHHHHHHhCchhhhhheeCCCCccCceEE-eccHHHHHHHHHHHhccC
Confidence 876665554432 3445555 888865543 346789999999987654
No 84
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.51 E-value=3.8e-13 Score=123.15 Aligned_cols=215 Identities=17% Similarity=0.180 Sum_probs=136.3
Q ss_pred CCCeEEEEcCCCCCh--HHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcC---EEEEE
Q 005554 426 EGPAILLVHGFGAFL--EHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEP---VHLIG 500 (691)
Q Consensus 426 ~~p~VlliHG~~~~~--~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~---v~lvG 500 (691)
+...||++||+-++. .....++..|.+.|+.++.+|++|.|.|......-.....++|+..+++++.... -+++|
T Consensus 32 s~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr~v~vi~g 111 (269)
T KOG4667|consen 32 STEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNRVVPVILG 111 (269)
T ss_pred CceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccCcccchHHHHHHHHHHhccCceEEEEEEe
Confidence 456899999997763 4556788899999999999999999999876533334445699999999986633 36789
Q ss_pred eChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCCh-hhhhhHHHHHHHHhhHHHHHHhhcCCCCc-
Q 005554 501 NSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGP-IRLGAQLLLFYLRLNISNFVKQCYPTRRE- 578 (691)
Q Consensus 501 hS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 578 (691)
||-||.+++.+|.++++ +.-+|.+++-+... ..+ .++... .+.......+.....
T Consensus 112 HSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~--------------~~I~eRlg~~--------~l~~ike~Gfid~~~r 168 (269)
T KOG4667|consen 112 HSKGGDVVLLYASKYHD-IRNVINCSGRYDLK--------------NGINERLGED--------YLERIKEQGFIDVGPR 168 (269)
T ss_pred ecCccHHHHHHHHhhcC-chheEEcccccchh--------------cchhhhhccc--------HHHHHHhCCceecCcc
Confidence 99999999999999987 77777776643210 001 011111 111111111111111
Q ss_pred --cccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhc--CCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEE
Q 005554 579 --RADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLE--GFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIR 654 (691)
Q Consensus 579 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~ 654 (691)
.....+..+-+.. . ...++.+... ..+||||-+||..|.++|.++ ...+++.+++.++.
T Consensus 169 kG~y~~rvt~eSlmd---------------r-Lntd~h~aclkId~~C~VLTvhGs~D~IVPve~-AkefAk~i~nH~L~ 231 (269)
T KOG4667|consen 169 KGKYGYRVTEESLMD---------------R-LNTDIHEACLKIDKQCRVLTVHGSEDEIVPVED-AKEFAKIIPNHKLE 231 (269)
T ss_pred cCCcCceecHHHHHH---------------H-HhchhhhhhcCcCccCceEEEeccCCceeechh-HHHHHHhccCCceE
Confidence 1111111110000 0 0011111122 347999999999999999995 56677888888888
Q ss_pred Ee-CCCCCCCccChHHHHHHHHHHHHhh
Q 005554 655 EL-DAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 655 ~~-~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
++ ++.|..... .++.......|.+..
T Consensus 232 iIEgADHnyt~~-q~~l~~lgl~f~k~r 258 (269)
T KOG4667|consen 232 IIEGADHNYTGH-QSQLVSLGLEFIKTR 258 (269)
T ss_pred EecCCCcCccch-hhhHhhhcceeEEee
Confidence 88 899976544 345556666666543
No 85
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.51 E-value=4.4e-12 Score=129.48 Aligned_cols=117 Identities=20% Similarity=0.200 Sum_probs=83.7
Q ss_pred cCeEEEEEEeCC------CCCeEEEEcCCCCChHHHHHH--HHHH-hcCCCEEEEeCC--CCCcCCCCC-----------
Q 005554 414 NGYQIQYTVAGK------EGPAILLVHGFGAFLEHYRDN--IYDI-ADGGNRVWAITL--LGFGRSEKP----------- 471 (691)
Q Consensus 414 ~g~~i~y~~~g~------~~p~VlliHG~~~~~~~~~~~--~~~L-~~~G~~Vi~~D~--~G~G~S~~~----------- 471 (691)
-+.++.|..+.+ +.|+|+|+||++++...|... +..+ .+.|+.|+++|. +|+|.+...
T Consensus 23 ~~~~~~~~v~~P~~~~~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~ 102 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAAAGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGF 102 (275)
T ss_pred cCCceEEEEEcCCCccCCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccc
Confidence 455555555433 258999999999988877532 3344 456899999998 555533210
Q ss_pred ---------CcCCCHHH-HHHHHHHHHHH---hCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 472 ---------NIVYTELM-WSELLRDFTVE---VVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 472 ---------~~~~s~~~-~a~dl~~ll~~---l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
...++..+ +++++..+++. ++.++++++||||||.+++.++.++|+.+++++++++...
T Consensus 103 ~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~ 174 (275)
T TIGR02821 103 YVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVA 174 (275)
T ss_pred cccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccC
Confidence 01223333 46777777776 3457899999999999999999999999999999988643
No 86
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.48 E-value=3.8e-12 Score=125.79 Aligned_cols=118 Identities=20% Similarity=0.302 Sum_probs=102.6
Q ss_pred EEEcCeEEEEEEeCCC-------CCeEEEEcCCCCChHHHHHHHHHHhcC---C------CEEEEeCCCCCcCCCCCC-c
Q 005554 411 WRWNGYQIQYTVAGKE-------GPAILLVHGFGAFLEHYRDNIYDIADG---G------NRVWAITLLGFGRSEKPN-I 473 (691)
Q Consensus 411 ~~~~g~~i~y~~~g~~-------~p~VlliHG~~~~~~~~~~~~~~L~~~---G------~~Vi~~D~~G~G~S~~~~-~ 473 (691)
.++.|.+||+....++ -.|||++|||+++...|..++..|.+. | |.||++.+||+|.|+.+. .
T Consensus 129 TeIeGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~sk~ 208 (469)
T KOG2565|consen 129 TEIEGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPSKT 208 (469)
T ss_pred hhhcceeEEEEEecCCccccCCcccceEEecCCCchHHHHHhhhhhhcCccccCCccceeEEEeccCCCCcccCcCCccC
Confidence 4567888887765432 138999999999999999999999764 2 789999999999999876 5
Q ss_pred CCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 474 VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 474 ~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
+++....|..+..+|-.+|.+++.+-|..||+.|+..+|..||+.|.|+-+-.+.
T Consensus 209 GFn~~a~ArvmrkLMlRLg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm~~ 263 (469)
T KOG2565|consen 209 GFNAAATARVMRKLMLRLGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNMCF 263 (469)
T ss_pred CccHHHHHHHHHHHHHHhCcceeEeecCchHHHHHHHHHhhcchhhhHhhhcccc
Confidence 7899999999999999999999999999999999999999999999998776654
No 87
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.46 E-value=2.9e-12 Score=145.03 Aligned_cols=229 Identities=17% Similarity=0.117 Sum_probs=147.6
Q ss_pred ceEEEEEEEcCeEEEEEEeCCC--C-----CeEEEEcCCCCChH--HHHHHHHHHhcCCCEEEEeCCCCCcCCCC-----
Q 005554 405 VYSTRIWRWNGYQIQYTVAGKE--G-----PAILLVHGFGAFLE--HYRDNIYDIADGGNRVWAITLLGFGRSEK----- 470 (691)
Q Consensus 405 ~~~~~~~~~~g~~i~y~~~g~~--~-----p~VlliHG~~~~~~--~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~----- 470 (691)
+..+.+-..+|.+|+.....+. + |+||++||.+.... .|...++.|+.+||.|+.+++||.+.-..
T Consensus 365 ~e~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~ 444 (620)
T COG1506 365 PEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADA 444 (620)
T ss_pred ceEEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHh
Confidence 3445566668889988776542 1 79999999975443 46678889999999999999997654211
Q ss_pred ---CCcCCCHHHHHHHHHHHHHHhCC---cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhh
Q 005554 471 ---PNIVYTELMWSELLRDFTVEVVG---EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNER 544 (691)
Q Consensus 471 ---~~~~~s~~~~a~dl~~ll~~l~~---~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~ 544 (691)
.......+|+.+.+. ++...+. ++++++|||+||.+++.++...| .+++.+...+........
T Consensus 445 ~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~--------- 513 (620)
T COG1506 445 IRGDWGGVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYF--------- 513 (620)
T ss_pred hhhccCCccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhc---------
Confidence 123446777777777 5555544 57999999999999999999988 677777666642211000
Q ss_pred hcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcE
Q 005554 545 QASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKV 624 (691)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pv 624 (691)
... ................. . ... ...........++++|+
T Consensus 514 --------~~~------~~~~~~~~~~~~~~~~~--~----------------~~~-------~~~~sp~~~~~~i~~P~ 554 (620)
T COG1506 514 --------GES------TEGLRFDPEENGGGPPE--D----------------REK-------YEDRSPIFYADNIKTPL 554 (620)
T ss_pred --------ccc------chhhcCCHHHhCCCccc--C----------------hHH-------HHhcChhhhhcccCCCE
Confidence 000 00000000000000000 0 000 00111223467899999
Q ss_pred EEEEeCCCCCCChhHHHHHHHHh---CCCcEEEEe-CCCCCCCc-cChHHHHHHHHHHHHhhhC
Q 005554 625 LIIQGIKDPISDSKSKVAMFKEH---CAGIVIREL-DAGHCPHD-EKPEEVNSIISEWIVTIES 683 (691)
Q Consensus 625 LiI~G~~D~~vp~~~~~~~~~~~---~~~~~~~~~-~~GH~~~~-e~pe~v~~~I~~fL~~~~~ 683 (691)
|+|||++|..||.++..+++..+ ...++++++ +.||.+.- ++-..+.+.+.+|+++...
T Consensus 555 LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~~ 618 (620)
T COG1506 555 LLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLK 618 (620)
T ss_pred EEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHhc
Confidence 99999999999998666655544 355677777 99998777 4577888999999988654
No 88
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.42 E-value=8.2e-12 Score=122.59 Aligned_cols=192 Identities=16% Similarity=0.170 Sum_probs=114.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCCCCC-----Cc---CCCHHHHHHHHHHHHHHh--CCcCEEEEEeChhHHHHHHHH
Q 005554 443 YRDNIYDIADGGNRVWAITLLGFGRSEKP-----NI---VYTELMWSELLRDFTVEV--VGEPVHLIGNSIGGYFVAIVA 512 (691)
Q Consensus 443 ~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~-----~~---~~s~~~~a~dl~~ll~~l--~~~~v~lvGhS~GG~ial~~A 512 (691)
|......|+++||.|+.+|+||.+..... .. ...++|..+.+..+++.- ..+++.++|+|+||.+++.++
T Consensus 3 f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~ 82 (213)
T PF00326_consen 3 FNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAA 82 (213)
T ss_dssp -SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhh
Confidence 44567788899999999999998753321 11 122333444444443332 236799999999999999999
Q ss_pred HhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHHHHHHHHHhc
Q 005554 513 CLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRAS 592 (691)
Q Consensus 513 ~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (691)
..+|++++++|..++............ . +... .... . +. +.. .......
T Consensus 83 ~~~~~~f~a~v~~~g~~d~~~~~~~~~--------~-----------~~~~---~~~~-~-~~-~~~-~~~~~~~----- 131 (213)
T PF00326_consen 83 TQHPDRFKAAVAGAGVSDLFSYYGTTD--------I-----------YTKA---EYLE-Y-GD-PWD-NPEFYRE----- 131 (213)
T ss_dssp HHTCCGSSEEEEESE-SSTTCSBHHTC--------C-----------HHHG---HHHH-H-SS-TTT-SHHHHHH-----
T ss_pred cccceeeeeeeccceecchhccccccc--------c-----------cccc---cccc-c-Cc-cch-hhhhhhh-----
Confidence 999999999999998644322111000 0 0000 0000 0 00 000 1111100
Q ss_pred CCcchHHHHHHHhccccCcchHhhhcC--CCCcEEEEEeCCCCCCChhHHHHHHHHh---CCCcEEEEe-CCCCCCC-cc
Q 005554 593 YDPGVLVVLESIFSFKLSLPLNYLLEG--FKEKVLIIQGIKDPISDSKSKVAMFKEH---CAGIVIREL-DAGHCPH-DE 665 (691)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--i~~PvLiI~G~~D~~vp~~~~~~~~~~~---~~~~~~~~~-~~GH~~~-~e 665 (691)
... ...+.+ +++|+|+++|++|..||++...+++..+ ....++++. ++||... .+
T Consensus 132 -----------~s~-------~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~ 193 (213)
T PF00326_consen 132 -----------LSP-------ISPADNVQIKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPE 193 (213)
T ss_dssp -----------HHH-------GGGGGGCGGGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHH
T ss_pred -----------hcc-------ccccccccCCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCch
Confidence 000 011233 7899999999999999998665555443 345777777 9999554 34
Q ss_pred ChHHHHHHHHHHHHhhhC
Q 005554 666 KPEEVNSIISEWIVTIES 683 (691)
Q Consensus 666 ~pe~v~~~I~~fL~~~~~ 683 (691)
...+..+.+.+||++...
T Consensus 194 ~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 194 NRRDWYERILDFFDKYLK 211 (213)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcC
Confidence 467889999999998654
No 89
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.42 E-value=1.7e-12 Score=137.28 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=85.6
Q ss_pred EeCCCCCeEEEEcCCCCCh--HHHHH-HHHHHhc--CCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHh-----
Q 005554 422 VAGKEGPAILLVHGFGAFL--EHYRD-NIYDIAD--GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV----- 491 (691)
Q Consensus 422 ~~g~~~p~VlliHG~~~~~--~~~~~-~~~~L~~--~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l----- 491 (691)
...+.+|++|+|||++++. ..|.. ++..|.. ..|+||++|++|+|.|..+........+++++.++++.+
T Consensus 36 ~Fn~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 36 NFNHETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CcCCCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCccccccHHHHHHHHHHHHHHHHHhhC
Confidence 3344589999999998653 45765 5665542 259999999999998876543334466777777777654
Q ss_pred -CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 492 -VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 492 -~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
+.++++||||||||.+|..++..+|++|.+|++++|++.
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP 155 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGP 155 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCCC
Confidence 358999999999999999999999999999999999753
No 90
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.40 E-value=1.6e-11 Score=131.98 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=84.7
Q ss_pred CCeEEEEcCCCCChHHH-----HHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHh----CCcCEE
Q 005554 427 GPAILLVHGFGAFLEHY-----RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV----VGEPVH 497 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~-----~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l----~~~~v~ 497 (691)
+.|||+|+.+-.-...+ ..+++.|.++||.|+++|+++-+..+ ..++++++++.+.+.++.+ +.+++.
T Consensus 215 ~~PLLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~---r~~~ldDYv~~i~~Ald~V~~~tG~~~vn 291 (560)
T TIGR01839 215 ARPLLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAH---REWGLSTYVDALKEAVDAVRAITGSRDLN 291 (560)
T ss_pred CCcEEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCChhh---cCCCHHHHHHHHHHHHHHHHHhcCCCCee
Confidence 67999999987655555 47999999999999999999866553 4678888887777766654 568899
Q ss_pred EEEeChhHHHHHH----HHHhCcc-ccceEEEecCCCCCC
Q 005554 498 LIGNSIGGYFVAI----VACLWPA-VVKSVVLINSAGNVI 532 (691)
Q Consensus 498 lvGhS~GG~ial~----~A~~~P~-~V~~lVll~~~~~~~ 532 (691)
++||||||.+++. +++++++ +|++++++.+..+..
T Consensus 292 l~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 292 LLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred EEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccC
Confidence 9999999999997 8888886 799999998876544
No 91
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.38 E-value=2.2e-11 Score=125.39 Aligned_cols=269 Identities=18% Similarity=0.111 Sum_probs=138.2
Q ss_pred cCCCCcchHHHHHHHhhhHHHHHHHHHhhhccCCCCCceEEEEEEEcCeEEEEEEeCC-----CCCeEEEEcCCCCChHH
Q 005554 368 LSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQYTVAGK-----EGPAILLVHGFGAFLEH 442 (691)
Q Consensus 368 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~y~~~g~-----~~p~VlliHG~~~~~~~ 442 (691)
..|-++..+|-....+......-...............+.+.|-..+|..|+-.-.-+ +-|.||.+||+++....
T Consensus 19 ~~P~DFd~FW~~~l~e~~~~p~~~~l~~~~~~~~~~~vy~v~f~s~~g~~V~g~l~~P~~~~~~~Pavv~~hGyg~~~~~ 98 (320)
T PF05448_consen 19 PEPADFDAFWKKTLAELAAVPLDPELEPVEFPTPGVEVYDVSFESFDGSRVYGWLYRPKNAKGKLPAVVQFHGYGGRSGD 98 (320)
T ss_dssp ---TTHHHHHHHHHHHHHTS----EEEEES-SBSSEEEEEEEEEEGGGEEEEEEEEEES-SSSSEEEEEEE--TT--GGG
T ss_pred CCCccHHHHHHHHHHHHhcCCCCcEEEEeccCCCCEEEEEEEEEccCCCEEEEEEEecCCCCCCcCEEEEecCCCCCCCC
Confidence 3455778888766554433322221111111122234455667777888887432221 24689999999998777
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcC-CCCCC-------------------cCCCHHHHHHHHHHHHHHh------CCcCE
Q 005554 443 YRDNIYDIADGGNRVWAITLLGFGR-SEKPN-------------------IVYTELMWSELLRDFTVEV------VGEPV 496 (691)
Q Consensus 443 ~~~~~~~L~~~G~~Vi~~D~~G~G~-S~~~~-------------------~~~s~~~~a~dl~~ll~~l------~~~~v 496 (691)
|...+. ++..||.|+.+|.+|+|. +.... +.+-+..+..|....++.+ +.+++
T Consensus 99 ~~~~~~-~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI 177 (320)
T PF05448_consen 99 PFDLLP-WAAAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRI 177 (320)
T ss_dssp HHHHHH-HHHTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred cccccc-cccCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceE
Confidence 765543 567799999999999993 21100 0111222333444444433 23679
Q ss_pred EEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCC
Q 005554 497 HLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTR 576 (691)
Q Consensus 497 ~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (691)
.+.|.|+||.+++.+|+..| +|++++...|...-.... .. ...... ....+..++..... .
T Consensus 178 ~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~~~~--~~---~~~~~~------------~y~~~~~~~~~~d~-~ 238 (320)
T PF05448_consen 178 GVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDFRRA--LE---LRADEG------------PYPEIRRYFRWRDP-H 238 (320)
T ss_dssp EEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSHHHH--HH---HT--ST------------TTHHHHHHHHHHSC-T
T ss_pred EEEeecCchHHHHHHHHhCc-cccEEEecCCCccchhhh--hh---cCCccc------------cHHHHHHHHhccCC-C
Confidence 99999999999999999987 599999988753210000 00 000000 00011111111100 0
Q ss_pred CccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe
Q 005554 577 RERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL 656 (691)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~ 656 (691)
.. ....++......|..+..+.|++|+++-.|-.|.+|||..+...+.......++.+.
T Consensus 239 ~~---------------------~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~~K~l~vy 297 (320)
T PF05448_consen 239 HE---------------------REPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPGPKELVVY 297 (320)
T ss_dssp HC---------------------HHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--SSEEEEEE
T ss_pred cc---------------------cHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccCCCeeEEec
Confidence 00 001122222234556678899999999999999999999777777666666777777
Q ss_pred -CCCCCCCccChHHHHHHHHHHHHh
Q 005554 657 -DAGHCPHDEKPEEVNSIISEWIVT 680 (691)
Q Consensus 657 -~~GH~~~~e~pe~v~~~I~~fL~~ 680 (691)
..||-..-+ .-.+...+||.+
T Consensus 298 p~~~He~~~~---~~~~~~~~~l~~ 319 (320)
T PF05448_consen 298 PEYGHEYGPE---FQEDKQLNFLKE 319 (320)
T ss_dssp TT--SSTTHH---HHHHHHHHHHHH
T ss_pred cCcCCCchhh---HHHHHHHHHHhc
Confidence 788855432 336777778765
No 92
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.38 E-value=1.1e-12 Score=133.16 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=86.6
Q ss_pred CeEEEEEEeCCCCCeEEEEcCCCCCh-HHHHH-HHHHHh-cCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHh
Q 005554 415 GYQIQYTVAGKEGPAILLVHGFGAFL-EHYRD-NIYDIA-DGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV 491 (691)
Q Consensus 415 g~~i~y~~~g~~~p~VlliHG~~~~~-~~~~~-~~~~L~-~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l 491 (691)
+..+.+....+++|++|+|||++++. ..|.. +...+. ..+|+|+++|++|++.+..+....+.+.+++++..+++.+
T Consensus 24 ~~~~~~~~f~~~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L 103 (275)
T cd00707 24 PSSLKNSNFNPSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFL 103 (275)
T ss_pred hhhhhhcCCCCCCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHH
Confidence 45566666676789999999998876 56654 444444 4579999999999854332222344555556666665554
Q ss_pred ------CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 492 ------VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 492 ------~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
+.++++||||||||.+|..++.++|++|.++|+++|+..
T Consensus 104 ~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 104 VDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred HHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 347899999999999999999999999999999998753
No 93
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.36 E-value=3.7e-11 Score=117.67 Aligned_cols=104 Identities=17% Similarity=0.128 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCCChHHHH---HHHHHHhcCCCEEEEeCCCCCcCCCCCC----------cCCCHHHHHHHHHHHHHHhC
Q 005554 426 EGPAILLVHGFGAFLEHYR---DNIYDIADGGNRVWAITLLGFGRSEKPN----------IVYTELMWSELLRDFTVEVV 492 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~---~~~~~L~~~G~~Vi~~D~~G~G~S~~~~----------~~~s~~~~a~dl~~ll~~l~ 492 (691)
+.|+||++||++++...+. .+...+.+.||.|+++|.+|++.+.... ......++.+.+..+.+..+
T Consensus 12 ~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (212)
T TIGR01840 12 PRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKANYS 91 (212)
T ss_pred CCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHhcC
Confidence 4789999999998877765 3445555679999999999987543210 01122333333344444443
Q ss_pred C--cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCC
Q 005554 493 G--EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529 (691)
Q Consensus 493 ~--~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~ 529 (691)
+ ++++|+|||+||.+++.++..+|+.+.+++.+++..
T Consensus 92 id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~ 130 (212)
T TIGR01840 92 IDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLP 130 (212)
T ss_pred cChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence 3 579999999999999999999999999999988753
No 94
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.35 E-value=4e-11 Score=134.49 Aligned_cols=127 Identities=20% Similarity=0.125 Sum_probs=99.4
Q ss_pred CceEEEEEEEcCeEEEEEEeCCCC----------CeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCC--
Q 005554 404 GVYSTRIWRWNGYQIQYTVAGKEG----------PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKP-- 471 (691)
Q Consensus 404 ~~~~~~~~~~~g~~i~y~~~g~~~----------p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~-- 471 (691)
...+.++...++.+|.|...+..+ |+|||+||++++...|..+++.|.++||+|+++|+||||.|...
T Consensus 416 ~~vp~~~~~p~~~~i~~~~~~~g~~~~~~p~~g~P~VVllHG~~g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~ 495 (792)
T TIGR03502 416 ENVPVLLTTPNGPVIAAFRAGTGLETFAAPTDGWPVVIYQHGITGAKENALAFAGTLAAAGVATIAIDHPLHGARSFDAN 495 (792)
T ss_pred cccceEEEecCcchhhhhhcccccccccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccc
Confidence 345668888899888887754332 48999999999999999999999988999999999999999432
Q ss_pred --------Cc--C-----------CCHHHHHHHHHHHHHHhC----------------CcCEEEEEeChhHHHHHHHHHh
Q 005554 472 --------NI--V-----------YTELMWSELLRDFTVEVV----------------GEPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 472 --------~~--~-----------~s~~~~a~dl~~ll~~l~----------------~~~v~lvGhS~GG~ial~~A~~ 514 (691)
.. . .++++.+.|+..+...++ ..+++++||||||++++.++..
T Consensus 496 ~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 496 ASGVNATNANVLAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred cccccccccCccceeccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 11 1 267889999999888776 2589999999999999999975
Q ss_pred Ccc-----------ccceEEEecCCCC
Q 005554 515 WPA-----------VVKSVVLINSAGN 530 (691)
Q Consensus 515 ~P~-----------~V~~lVll~~~~~ 530 (691)
... .+....+.+|.+.
T Consensus 576 an~~~~~~~~~~l~~~~~a~l~~pgGg 602 (792)
T TIGR03502 576 ANTPLGSPTADALYAVNAASLQNPGGG 602 (792)
T ss_pred cCccccCCccccccccceeeeecCCcc
Confidence 322 2456666665543
No 95
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.35 E-value=1.9e-10 Score=120.54 Aligned_cols=250 Identities=16% Similarity=0.146 Sum_probs=147.8
Q ss_pred CeEEEEcCCCCChHHH-HHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHH
Q 005554 428 PAILLVHGFGAFLEHY-RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGY 506 (691)
Q Consensus 428 p~VlliHG~~~~~~~~-~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ 506 (691)
|+||++..+.+..... +.+++.|.+ |+.|+..|+..-+..+.....++++++++.|.++++++|.+ ++++|+|+||.
T Consensus 103 ~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~~~f~ldDYi~~l~~~i~~~G~~-v~l~GvCqgG~ 180 (406)
T TIGR01849 103 PAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNARMVPLSAGKFDLEDYIDYLIEFIRFLGPD-IHVIAVCQPAV 180 (406)
T ss_pred CcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCchhcCCCCHHHHHHHHHHHHHHhCCC-CcEEEEchhhH
Confidence 7999999988765444 568899998 99999999987776555567889999999999999999877 99999999999
Q ss_pred HHHHHHHhC-----ccccceEEEecCCCCCCCchhhh-hhhhhhhcCChhh-----------------hhhH-HHHHH--
Q 005554 507 FVAIVACLW-----PAVVKSVVLINSAGNVIPEYSFL-QFSNERQASGPIR-----------------LGAQ-LLLFY-- 560 (691)
Q Consensus 507 ial~~A~~~-----P~~V~~lVll~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~~-~~~~~-- 560 (691)
.++.+++.. |.++++++++.++.+........ .........++.. .... ....+
T Consensus 181 ~~laa~Al~a~~~~p~~~~sltlm~~PID~~~~p~~v~~~a~~~~i~~~~~~~i~~vp~~~~g~gr~v~PG~~~~~~F~~ 260 (406)
T TIGR01849 181 PVLAAVALMAENEPPAQPRSMTLMGGPIDARASPTVVNELAREKPIEWFQHNVIMRVPFPYPGAGRLVYPGFLQLAGFIS 260 (406)
T ss_pred HHHHHHHHHHhcCCCCCcceEEEEecCccCCCCCchHHHHhhcccHHHHHHHhhhccCccccCCCCcccCHHHHHHHHHH
Confidence 988777664 66799999999986654311100 0000000000000 0000 00000
Q ss_pred ---HH--hhHHHHHHhhcCCCCccccH-H-HHHHHHHhcCCcc--hHHHHHHHhcccc-Cc------chHhhhcCCC-Cc
Q 005554 561 ---LR--LNISNFVKQCYPTRRERADD-W-LISEMLRASYDPG--VLVVLESIFSFKL-SL------PLNYLLEGFK-EK 623 (691)
Q Consensus 561 ---~~--~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~------~~~~~l~~i~-~P 623 (691)
.+ .....++............. . +.+.+.....-++ ..+.+..++.... .. ...-.+++|+ +|
T Consensus 261 mnp~r~~~~~~~~~~~l~~gd~~~~~~~~~f~~~y~d~~dlpge~y~~~v~~vf~~n~L~~G~l~v~G~~Vdl~~I~~~p 340 (406)
T TIGR01849 261 MNLDRHTKAHSDFFLHLVKGDGQEADKHRIFYDEYLAVMDMTAEFYLQTIDVVFQQFLLPQGKFIVEGKRVDPGAITRVA 340 (406)
T ss_pred cCcchHHHHHHHHHHHHhcCCcchHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHhCCccCCcEEECCEEecHHHCcccc
Confidence 00 00111222221111111111 0 1121222111111 2223333332211 00 1112567899 99
Q ss_pred EEEEEeCCCCCCChhHHHHHHHHhC---C--CcEEEEe-CCCCCCCccC---hHHHHHHHHHHHHh
Q 005554 624 VLIIQGIKDPISDSKSKVAMFKEHC---A--GIVIREL-DAGHCPHDEK---PEEVNSIISEWIVT 680 (691)
Q Consensus 624 vLiI~G~~D~~vp~~~~~~~~~~~~---~--~~~~~~~-~~GH~~~~e~---pe~v~~~I~~fL~~ 680 (691)
+|.|.|++|.++|+... ..+..++ + ..+..+. ++||+..+-- .+++...|.+||.+
T Consensus 341 ll~V~ge~D~I~p~~qt-~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 341 LLTVEGENDDISGLGQT-KAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred eEEEeccCCCcCCHHHh-HHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 99999999999999854 4444443 3 2334444 9999877643 68999999999976
No 96
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.34 E-value=2.9e-11 Score=135.57 Aligned_cols=116 Identities=16% Similarity=0.059 Sum_probs=90.3
Q ss_pred cCeEEEEEEeCC----CCCeEEEEcCCCCChH----HHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHH
Q 005554 414 NGYQIQYTVAGK----EGPAILLVHGFGAFLE----HYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLR 485 (691)
Q Consensus 414 ~g~~i~y~~~g~----~~p~VlliHG~~~~~~----~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~ 485 (691)
+|.+|++..+.+ +.|+||++||++.+.. ........|+++||.|+++|+||+|.|......++ ...++|+.
T Consensus 5 DG~~L~~~~~~P~~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~~-~~~~~D~~ 83 (550)
T TIGR00976 5 DGTRLAIDVYRPAGGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLLG-SDEAADGY 83 (550)
T ss_pred CCCEEEEEEEecCCCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEecC-cccchHHH
Confidence 677787654432 3689999999987653 22235567888999999999999999987654444 45677777
Q ss_pred HHHHHhCC-----cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 486 DFTVEVVG-----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 486 ~ll~~l~~-----~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
++++.+.. .++.++|||+||.+++.+|..+|+.++++|..++...
T Consensus 84 ~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d 133 (550)
T TIGR00976 84 DLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWD 133 (550)
T ss_pred HHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccc
Confidence 77776532 5899999999999999999999999999999887643
No 97
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=99.32 E-value=4.4e-11 Score=118.83 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=83.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCc-CEEEEEeChhHH
Q 005554 428 PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGE-PVHLIGNSIGGY 506 (691)
Q Consensus 428 p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~-~v~lvGhS~GG~ 506 (691)
++|+|+||.+++...|.++++.|...++.|+.++.+|.+. ......+++++++...+.+.....+ +++|+|||+||.
T Consensus 1 ~~lf~~p~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~~~--~~~~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~ 78 (229)
T PF00975_consen 1 RPLFCFPPAGGSASSYRPLARALPDDVIGVYGIEYPGRGD--DEPPPDSIEELASRYAEAIRARQPEGPYVLAGWSFGGI 78 (229)
T ss_dssp -EEEEESSTTCSGGGGHHHHHHHTTTEEEEEEECSTTSCT--TSHEESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHH
T ss_pred CeEEEEcCCccCHHHHHHHHHhCCCCeEEEEEEecCCCCC--CCCCCCCHHHHHHHHHHHhhhhCCCCCeeehccCccHH
Confidence 4899999999999999999999987448999999999982 2234578999999888888776665 999999999999
Q ss_pred HHHHHHHhCc---cccceEEEecCC
Q 005554 507 FVAIVACLWP---AVVKSVVLINSA 528 (691)
Q Consensus 507 ial~~A~~~P---~~V~~lVll~~~ 528 (691)
+|.++|.+-- ..|..++++++.
T Consensus 79 lA~E~A~~Le~~G~~v~~l~liD~~ 103 (229)
T PF00975_consen 79 LAFEMARQLEEAGEEVSRLILIDSP 103 (229)
T ss_dssp HHHHHHHHHHHTT-SESEEEEESCS
T ss_pred HHHHHHHHHHHhhhccCceEEecCC
Confidence 9999997642 358999999975
No 98
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.31 E-value=8.3e-11 Score=121.87 Aligned_cols=235 Identities=17% Similarity=0.162 Sum_probs=124.7
Q ss_pred ceEEEEEEEcCeEEEEEEeCCC----CCeEEEEcCCCCChHHHHH-HHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHH
Q 005554 405 VYSTRIWRWNGYQIQYTVAGKE----GPAILLVHGFGAFLEHYRD-NIYDIADGGNRVWAITLLGFGRSEKPNIVYTELM 479 (691)
Q Consensus 405 ~~~~~~~~~~g~~i~y~~~g~~----~p~VlliHG~~~~~~~~~~-~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~ 479 (691)
.++.-.+.+.|.+|.-.-+-++ .|+||++.|+-+..+.+.. +.+.|..+|+.++++|.||.|.|..-....+.+.
T Consensus 164 ~i~~v~iP~eg~~I~g~LhlP~~~~p~P~VIv~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~ 243 (411)
T PF06500_consen 164 PIEEVEIPFEGKTIPGYLHLPSGEKPYPTVIVCGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSR 243 (411)
T ss_dssp EEEEEEEEETTCEEEEEEEESSSSS-EEEEEEE--TTS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCH
T ss_pred CcEEEEEeeCCcEEEEEEEcCCCCCCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHH
Confidence 3444455567776654333222 3677777777777766544 4567889999999999999999864322222234
Q ss_pred HHHHHHHHHHHhCC---cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHH
Q 005554 480 WSELLRDFTVEVVG---EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQL 556 (691)
Q Consensus 480 ~a~dl~~ll~~l~~---~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (691)
+...+.+.+..... .+|.++|.||||++|.++|..++++++++|.++++.... +... .....
T Consensus 244 l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~--ft~~----~~~~~--------- 308 (411)
T PF06500_consen 244 LHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHF--FTDP----EWQQR--------- 308 (411)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCG--GH-H----HHHTT---------
T ss_pred HHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhh--hccH----HHHhc---------
Confidence 55566666665543 689999999999999999999999999999999863211 0000 00000
Q ss_pred HHHHHHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhh--cCCCCcEEEEEeCCCCC
Q 005554 557 LLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLL--EGFKEKVLIIQGIKDPI 634 (691)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~PvLiI~G~~D~~ 634 (691)
.+......+...+..... ..+ .....+..+.... ...+ .+..+|+|.+.|++|.+
T Consensus 309 ----~P~my~d~LA~rlG~~~~-~~~----------------~l~~el~~~SLk~--qGlL~~rr~~~plL~i~~~~D~v 365 (411)
T PF06500_consen 309 ----VPDMYLDVLASRLGMAAV-SDE----------------SLRGELNKFSLKT--QGLLSGRRCPTPLLAINGEDDPV 365 (411)
T ss_dssp ----S-HHHHHHHHHHCT-SCE--HH----------------HHHHHGGGGSTTT--TTTTTSS-BSS-EEEEEETT-SS
T ss_pred ----CCHHHHHHHHHHhCCccC-CHH----------------HHHHHHHhcCcch--hccccCCCCCcceEEeecCCCCC
Confidence 001111122222221111 011 1111222222111 1123 56789999999999999
Q ss_pred CChhHHHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhh
Q 005554 635 SDSKSKVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 635 vp~~~~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
+|.++ .+++.....+.+...+ ... ....-+.-...+.+||+..
T Consensus 366 ~P~eD-~~lia~~s~~gk~~~~~~~~---~~~gy~~al~~~~~Wl~~~ 409 (411)
T PF06500_consen 366 SPIED-SRLIAESSTDGKALRIPSKP---LHMGYPQALDEIYKWLEDK 409 (411)
T ss_dssp S-HHH-HHHHHHTBTT-EEEEE-SSS---HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHhcCCCCceeecCCCc---cccchHHHHHHHHHHHHHh
Confidence 99985 4556666555555554 322 1222346677888888764
No 99
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=99.30 E-value=4.2e-10 Score=113.48 Aligned_cols=104 Identities=24% Similarity=0.322 Sum_probs=88.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcC---CCEEEEeCCCCCcCCCCC------CcCCCHHHHHHHHHHHHHHhC-----
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADG---GNRVWAITLLGFGRSEKP------NIVYTELMWSELLRDFTVEVV----- 492 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~---G~~Vi~~D~~G~G~S~~~------~~~~s~~~~a~dl~~ll~~l~----- 492 (691)
+..++||+|.+|-.+.|..+++.|.+. .+.|+++.+.||-.++.. ...++++++++...++++.+.
T Consensus 2 ~~li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~~ 81 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKNK 81 (266)
T ss_pred cEEEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhcC
Confidence 457999999999999999999988754 699999999999777654 357899999988888776643
Q ss_pred -CcCEEEEEeChhHHHHHHHHHhCc---cccceEEEecCCCC
Q 005554 493 -GEPVHLIGNSIGGYFVAIVACLWP---AVVKSVVLINSAGN 530 (691)
Q Consensus 493 -~~~v~lvGhS~GG~ial~~A~~~P---~~V~~lVll~~~~~ 530 (691)
..+++|+|||+|+++++++..+.+ .+|.+++++-|+..
T Consensus 82 ~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~ 123 (266)
T PF10230_consen 82 PNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIE 123 (266)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccc
Confidence 356999999999999999999999 78999999998743
No 100
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.30 E-value=9.5e-11 Score=115.43 Aligned_cols=176 Identities=18% Similarity=0.152 Sum_probs=112.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcC-CCC--CCcC-----C---CHHHHHHHHHHHHHHhCC-
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGR-SEK--PNIV-----Y---TELMWSELLRDFTVEVVG- 493 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~-S~~--~~~~-----~---s~~~~a~dl~~ll~~l~~- 493 (691)
+.|.||++|++.+-....+.++..|++.||.|+++|+.+-.. ... .... . ..+...+++...++.+..
T Consensus 13 ~~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~ 92 (218)
T PF01738_consen 13 PRPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVDYLRAQ 92 (218)
T ss_dssp SEEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCT
T ss_pred CCCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 367999999988877788889999999999999999865433 111 1100 0 134556677666655532
Q ss_pred -----cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHH
Q 005554 494 -----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNF 568 (691)
Q Consensus 494 -----~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (691)
+++.++|+||||.+++.+|... ..++++|..-|....
T Consensus 93 ~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~~------------------------------------- 134 (218)
T PF01738_consen 93 PEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSPP------------------------------------- 134 (218)
T ss_dssp TTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSSG-------------------------------------
T ss_pred cccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCCC-------------------------------------
Confidence 5799999999999999999887 569999887761000
Q ss_pred HHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHh-
Q 005554 569 VKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEH- 647 (691)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~- 647 (691)
........++++|+++++|++|+.++.+...+..+.+
T Consensus 135 ------------------------------------------~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~ 172 (218)
T PF01738_consen 135 ------------------------------------------PPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALK 172 (218)
T ss_dssp ------------------------------------------GGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHH
T ss_pred ------------------------------------------CcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHH
Confidence 0001124567899999999999999998544443333
Q ss_pred --CCCcEEEEe-CCCCCCCccC--------hHHHHHHHHHHHHhh
Q 005554 648 --CAGIVIREL-DAGHCPHDEK--------PEEVNSIISEWIVTI 681 (691)
Q Consensus 648 --~~~~~~~~~-~~GH~~~~e~--------pe~v~~~I~~fL~~~ 681 (691)
....++++. +++|-..... .++..+.+.+||+++
T Consensus 173 ~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~ 217 (218)
T PF01738_consen 173 AAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRH 217 (218)
T ss_dssp CTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC-
T ss_pred hcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 467778887 7999766543 256677777888764
No 101
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.28 E-value=5.5e-11 Score=113.24 Aligned_cols=276 Identities=19% Similarity=0.151 Sum_probs=160.6
Q ss_pred HHHHHHhhhcCCCccCCCCcchHHHHHHHhhhHHHHHHHHHhhhccCCCCCceEEEEEEEcCeEEEEEEe----C-CCCC
Q 005554 354 YEAIKFEKERNAGFLSPFGYSAATIAAAADAVCSMEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQYTVA----G-KEGP 428 (691)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~y~~~----g-~~~p 428 (691)
.+++.|..++ ..|-++..+|-.+..+..+............+.+....+.+.|..++|.+|.-... + ..-|
T Consensus 9 eeLk~Y~p~~----~~P~DFdeFW~~~l~e~~~~~~~p~l~~~d~~~~~ve~ydvTf~g~~g~rI~gwlvlP~~~~~~~P 84 (321)
T COG3458 9 EELKAYRPER----EAPDDFDEFWKKTLEEARKVPPEPVLERSDFTLPRVEVYDVTFTGYGGARIKGWLVLPRHEKGKLP 84 (321)
T ss_pred HHHHhhCCCC----CCCCcHHHHHHHHHHHHhcCCCCceEEeccccCCceEEEEEEEeccCCceEEEEEEeecccCCccc
Confidence 4455555443 34557788886554433222211112222223344456667788888988875433 2 1358
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCC----CC-c----------------CCCHHHHHHHHHHH
Q 005554 429 AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEK----PN-I----------------VYTELMWSELLRDF 487 (691)
Q Consensus 429 ~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~----~~-~----------------~~s~~~~a~dl~~l 487 (691)
.||-.||++++...|..++.. +..||.|+.+|.||.|.|.. +. . .|-+.....|+...
T Consensus 85 ~vV~fhGY~g~~g~~~~~l~w-a~~Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~a 163 (321)
T COG3458 85 AVVQFHGYGGRGGEWHDMLHW-AVAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRA 163 (321)
T ss_pred eEEEEeeccCCCCCccccccc-cccceeEEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHH
Confidence 999999999998888665543 34599999999999998842 11 1 11111222333333
Q ss_pred HHH------hCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHH
Q 005554 488 TVE------VVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYL 561 (691)
Q Consensus 488 l~~------l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (691)
++. ...+++.+-|.|.||.+++.+++..| +|++++.+-|...-.+..- .. .. .-.
T Consensus 164 ve~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik~~~~~~Pfl~df~r~i--~~-----------~~-----~~~ 224 (321)
T COG3458 164 VEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIKAVVADYPFLSDFPRAI--EL-----------AT-----EGP 224 (321)
T ss_pred HHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhhcccccccccccchhhe--ee-----------cc-----cCc
Confidence 332 33478999999999999999999887 6999998877532111100 00 00 000
Q ss_pred HhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHH
Q 005554 562 RLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKV 641 (691)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~ 641 (691)
...+..+++..-+. .. ..+......+..+....+++|+|+..|-.|++|||..+.
T Consensus 225 ydei~~y~k~h~~~-----e~--------------------~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqF 279 (321)
T COG3458 225 YDEIQTYFKRHDPK-----EA--------------------EVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQF 279 (321)
T ss_pred HHHHHHHHHhcCch-----HH--------------------HHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhH
Confidence 01111222211110 00 111111223445567789999999999999999999777
Q ss_pred HHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhh
Q 005554 642 AMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 642 ~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
..+........+.+. .-+|.-. |.-..+.+..|++..
T Consensus 280 A~yN~l~~~K~i~iy~~~aHe~~---p~~~~~~~~~~l~~l 317 (321)
T COG3458 280 AAYNALTTSKTIEIYPYFAHEGG---PGFQSRQQVHFLKIL 317 (321)
T ss_pred HHhhcccCCceEEEeeccccccC---cchhHHHHHHHHHhh
Confidence 766666555666665 4446433 444455566777654
No 102
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.24 E-value=5.5e-11 Score=110.49 Aligned_cols=251 Identities=14% Similarity=0.201 Sum_probs=146.8
Q ss_pred EEEcCeEEEEEEeCCC--CC-eEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc---CCCHHHHHH-H
Q 005554 411 WRWNGYQIQYTVAGKE--GP-AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI---VYTELMWSE-L 483 (691)
Q Consensus 411 ~~~~g~~i~y~~~g~~--~p-~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~---~~s~~~~a~-d 483 (691)
-..||+.+....+... .+ .|++-.+.+.....|++++..+++.||.|.++|+||.|.|+.+.. .+.+.||+. |
T Consensus 11 ~~~DG~~l~~~~~pA~~~~~g~~~va~a~Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~D 90 (281)
T COG4757 11 PAPDGYSLPGQRFPADGKASGRLVVAGATGVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARLD 90 (281)
T ss_pred ccCCCccCccccccCCCCCCCcEEecccCCcchhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhhhhcc
Confidence 3446766665555433 23 566666677888899999999999999999999999999987543 366666654 4
Q ss_pred HHHHHH----HhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHH
Q 005554 484 LRDFTV----EVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLF 559 (691)
Q Consensus 484 l~~ll~----~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (691)
+...++ .+...+...|||||||.+.-.+. +++ ++.+....+....... + ..............+....+..
T Consensus 91 ~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~-~~~-k~~a~~vfG~gagwsg-~--m~~~~~l~~~~l~~lv~p~lt~ 165 (281)
T COG4757 91 FPAALAALKKALPGHPLYFVGHSFGGQALGLLG-QHP-KYAAFAVFGSGAGWSG-W--MGLRERLGAVLLWNLVGPPLTF 165 (281)
T ss_pred hHHHHHHHHhhCCCCceEEeeccccceeecccc-cCc-ccceeeEecccccccc-c--hhhhhcccceeeccccccchhh
Confidence 544444 34557899999999998765554 455 4555555544322111 0 0010000111111111122222
Q ss_pred HHHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhH
Q 005554 560 YLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKS 639 (691)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~ 639 (691)
+.......++ ...+...-....++.+....+... +.........+..+.+.+|++++...+|+.+|+.
T Consensus 166 w~g~~p~~l~-----G~G~d~p~~v~RdW~RwcR~p~y~------fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~A- 233 (281)
T COG4757 166 WKGYMPKDLL-----GLGSDLPGTVMRDWARWCRHPRYY------FDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPA- 233 (281)
T ss_pred ccccCcHhhc-----CCCccCcchHHHHHHHHhcCcccc------ccChhHhHHHHHHHHhcCceeeeccCCCCcCCHH-
Confidence 2221111111 112233333334443332222110 0001111244566788999999999999999998
Q ss_pred HHHHHHHhCCCcEEEEe----C---CCCCCCccCh-HHHHHHHHHHH
Q 005554 640 KVAMFKEHCAGIVIREL----D---AGHCPHDEKP-EEVNSIISEWI 678 (691)
Q Consensus 640 ~~~~~~~~~~~~~~~~~----~---~GH~~~~e~p-e~v~~~I~~fL 678 (691)
..+.+....+|+.+... . -||+-..-+| |.+.+.+.+|+
T Consensus 234 s~d~f~~~y~nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 234 SRDAFASFYRNAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHhhhcCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 56777777777765432 2 5999998887 88888888775
No 103
>PRK10162 acetyl esterase; Provisional
Probab=99.24 E-value=2.3e-09 Score=111.68 Aligned_cols=101 Identities=17% Similarity=0.110 Sum_probs=73.7
Q ss_pred CCeEEEEcCCC---CChHHHHHHHHHHhc-CCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHH---HHHhCC--cCEE
Q 005554 427 GPAILLVHGFG---AFLEHYRDNIYDIAD-GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDF---TVEVVG--EPVH 497 (691)
Q Consensus 427 ~p~VlliHG~~---~~~~~~~~~~~~L~~-~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~l---l~~l~~--~~v~ 497 (691)
.|+||++||.| ++...|..++..|++ .|+.|+.+|+|.......+. .+++..+.+..+ .+.+++ ++++
T Consensus 81 ~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~~p~---~~~D~~~a~~~l~~~~~~~~~d~~~i~ 157 (318)
T PRK10162 81 QATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEARFPQ---AIEEIVAVCCYFHQHAEDYGINMSRIG 157 (318)
T ss_pred CCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCCCCC---cHHHHHHHHHHHHHhHHHhCCChhHEE
Confidence 68999999976 566778888888887 48999999999755432222 344444433333 344554 5799
Q ss_pred EEEeChhHHHHHHHHHhC------ccccceEEEecCCCC
Q 005554 498 LIGNSIGGYFVAIVACLW------PAVVKSVVLINSAGN 530 (691)
Q Consensus 498 lvGhS~GG~ial~~A~~~------P~~V~~lVll~~~~~ 530 (691)
|+|+|+||.+++.++... +..++++|++.|...
T Consensus 158 l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~ 196 (318)
T PRK10162 158 FAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYG 196 (318)
T ss_pred EEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccC
Confidence 999999999999988753 357899999988643
No 104
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.23 E-value=5.5e-10 Score=101.37 Aligned_cols=169 Identities=20% Similarity=0.170 Sum_probs=115.2
Q ss_pred CCeEEEEcCC---C--CChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc-CC-CHHHHHHHHHHHHHHhCC-cC-EE
Q 005554 427 GPAILLVHGF---G--AFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VY-TELMWSELLRDFTVEVVG-EP-VH 497 (691)
Q Consensus 427 ~p~VlliHG~---~--~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~-~~-s~~~~a~dl~~ll~~l~~-~~-v~ 497 (691)
.|..|++|-- + .+...-..++..|.+.||.++.+|+||.|+|.+... .. -.+|.. .+.++++.... .+ +.
T Consensus 28 ~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~-aaldW~~~~hp~s~~~~ 106 (210)
T COG2945 28 APIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNGIGELEDAA-AALDWLQARHPDSASCW 106 (210)
T ss_pred CceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccCCcchHHHHH-HHHHHHHhhCCCchhhh
Confidence 6778888852 2 334445567888999999999999999999987642 22 233333 33444444433 23 46
Q ss_pred EEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCC
Q 005554 498 LIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRR 577 (691)
Q Consensus 498 lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (691)
+.|+|+|+.|++.+|.+.|+ ....|.+.+..+. +.
T Consensus 107 l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~-----------------------------------------~d--- 141 (210)
T COG2945 107 LAGFSFGAYIAMQLAMRRPE-ILVFISILPPINA-----------------------------------------YD--- 141 (210)
T ss_pred hcccchHHHHHHHHHHhccc-ccceeeccCCCCc-----------------------------------------hh---
Confidence 88999999999999999886 5555555553110 00
Q ss_pred ccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEeC
Q 005554 578 ERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIRELD 657 (691)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~ 657 (691)
...+....+|+++|+|+.|.+++.....++.+. .+-..+++.+
T Consensus 142 ------------------------------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-~~~~~i~i~~ 184 (210)
T COG2945 142 ------------------------------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-IKITVITIPG 184 (210)
T ss_pred ------------------------------------hhhccCCCCCceeEecChhhhhcHHHHHHhhcC-CCCceEEecC
Confidence 001345578999999999999998765555444 3334444559
Q ss_pred CCCCCCccChHHHHHHHHHHHH
Q 005554 658 AGHCPHDEKPEEVNSIISEWIV 679 (691)
Q Consensus 658 ~GH~~~~e~pe~v~~~I~~fL~ 679 (691)
++|+.+-. -..+.+.|.+|+.
T Consensus 185 a~HFF~gK-l~~l~~~i~~~l~ 205 (210)
T COG2945 185 ADHFFHGK-LIELRDTIADFLE 205 (210)
T ss_pred CCceeccc-HHHHHHHHHHHhh
Confidence 99987754 6688899999985
No 105
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.21 E-value=4.4e-10 Score=110.42 Aligned_cols=176 Identities=21% Similarity=0.165 Sum_probs=102.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHH-HHhcCCCEEEEeCCCC------CcC---CCC------CCcCC---CHHHHHHHHH
Q 005554 425 KEGPAILLVHGFGAFLEHYRDNIY-DIADGGNRVWAITLLG------FGR---SEK------PNIVY---TELMWSELLR 485 (691)
Q Consensus 425 ~~~p~VlliHG~~~~~~~~~~~~~-~L~~~G~~Vi~~D~~G------~G~---S~~------~~~~~---s~~~~a~dl~ 485 (691)
+..++|||+||+|.+...|..+.. .+.....+++.++-|. .|. +-. +.... .+...++.+.
T Consensus 12 ~~~~lvi~LHG~G~~~~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l~ 91 (216)
T PF02230_consen 12 KAKPLVILLHGYGDSEDLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAERLD 91 (216)
T ss_dssp T-SEEEEEE--TTS-HHHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCcchhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHHHH
Confidence 347899999999999977766555 2333357787776431 122 111 11111 2333344455
Q ss_pred HHHHHh-----CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHH
Q 005554 486 DFTVEV-----VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFY 560 (691)
Q Consensus 486 ~ll~~l-----~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (691)
++++.. ..++++|.|+|.||++++.++.++|+.+.++|.+++.......
T Consensus 92 ~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~-------------------------- 145 (216)
T PF02230_consen 92 ELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE-------------------------- 145 (216)
T ss_dssp HHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC--------------------------
T ss_pred HHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc--------------------------
Confidence 555432 2367999999999999999999999999999999975211000
Q ss_pred HHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHH
Q 005554 561 LRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSK 640 (691)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~ 640 (691)
... ..-..-++|++++||..|.++|.+..
T Consensus 146 ----------------~~~-----------------------------------~~~~~~~~pi~~~hG~~D~vvp~~~~ 174 (216)
T PF02230_consen 146 ----------------LED-----------------------------------RPEALAKTPILIIHGDEDPVVPFEWA 174 (216)
T ss_dssp ----------------CHC-----------------------------------CHCCCCTS-EEEEEETT-SSSTHHHH
T ss_pred ----------------ccc-----------------------------------cccccCCCcEEEEecCCCCcccHHHH
Confidence 000 00011168999999999999998643
Q ss_pred ---HHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhh
Q 005554 641 ---VAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 641 ---~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
.+.+++...+.+++.. ++||-+. .+..+.+.+||++.
T Consensus 175 ~~~~~~L~~~~~~v~~~~~~g~gH~i~----~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 175 EKTAEFLKAAGANVEFHEYPGGGHEIS----PEELRDLREFLEKH 215 (216)
T ss_dssp HHHHHHHHCTT-GEEEEEETT-SSS------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCCCC----HHHHHHHHHHHhhh
Confidence 3344444566788888 6999775 45557788888764
No 106
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.18 E-value=1.5e-10 Score=92.79 Aligned_cols=75 Identities=27% Similarity=0.348 Sum_probs=65.3
Q ss_pred CeEEEEEEeCCC---CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc-CCCHHHHHHHHHHHHH
Q 005554 415 GYQIQYTVAGKE---GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWSELLRDFTV 489 (691)
Q Consensus 415 g~~i~y~~~g~~---~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~-~~s~~~~a~dl~~ll~ 489 (691)
|.+|+|..+.++ +.+|+++||++.++..|..+++.|+++||.|+++|+||||.|..... .-+++++++|+..+++
T Consensus 1 G~~L~~~~w~p~~~~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 1 GTKLFYRRWKPENPPKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred CcEEEEEEecCCCCCCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccCCHHHHHHHHHHHhC
Confidence 578888888765 44899999999999999999999999999999999999999987543 3478999999998864
No 107
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.14 E-value=2.1e-09 Score=106.91 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=70.1
Q ss_pred EEEEcCeEEEEEEeCC-CCCeEEEEcCCCCC---hHHHHHHHHHHhcCCCEEEEeCCC----CCcCCCCCCcCCCHHHHH
Q 005554 410 IWRWNGYQIQYTVAGK-EGPAILLVHGFGAF---LEHYRDNIYDIADGGNRVWAITLL----GFGRSEKPNIVYTELMWS 481 (691)
Q Consensus 410 ~~~~~g~~i~y~~~g~-~~p~VlliHG~~~~---~~~~~~~~~~L~~~G~~Vi~~D~~----G~G~S~~~~~~~s~~~~a 481 (691)
.+..+-..+.|..... ....||||.|.+.. ......+++.|.+.||.|+-+-+. |+|.+ +++.-+
T Consensus 15 ~Y~~~~~afe~~~~~~~~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~-------SL~~D~ 87 (303)
T PF08538_consen 15 HYTPKLVAFEFTSSSSSAPNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTS-------SLDRDV 87 (303)
T ss_dssp EECCTTEEEEEEEE-TTSSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S---------HHHHH
T ss_pred EECCCCeEEEecCCCCCCCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcc-------hhhhHH
Confidence 3333444455555443 24589999998764 344567888887779999999754 55543 566666
Q ss_pred HHHHHHHHHh--------CCcCEEEEEeChhHHHHHHHHHhCc-----cccceEEEecCCCCC
Q 005554 482 ELLRDFTVEV--------VGEPVHLIGNSIGGYFVAIVACLWP-----AVVKSVVLINSAGNV 531 (691)
Q Consensus 482 ~dl~~ll~~l--------~~~~v~lvGhS~GG~ial~~A~~~P-----~~V~~lVll~~~~~~ 531 (691)
++|.++++.+ +.++|+|+|||.|+.-++.|..... ..|+++||-+|..+.
T Consensus 88 ~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDR 150 (303)
T PF08538_consen 88 EEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDR 150 (303)
T ss_dssp HHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---T
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCCh
Confidence 6776666543 2468999999999999999998752 569999999997543
No 108
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=99.13 E-value=1.4e-09 Score=102.26 Aligned_cols=214 Identities=12% Similarity=0.072 Sum_probs=111.6
Q ss_pred EEEEE-cCeEEEEEEeCCC------CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCC-cCCCCCCcCCCHHHH
Q 005554 409 RIWRW-NGYQIQYTVAGKE------GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGF-GRSEKPNIVYTELMW 480 (691)
Q Consensus 409 ~~~~~-~g~~i~y~~~g~~------~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~-G~S~~~~~~~s~~~~ 480 (691)
+.+.. +|.+|+.++..|. .++||+.+||+.....|..++.+|+..||+|+.+|...| |.|++.-..+++...
T Consensus 5 hvi~~~~~~~I~vwet~P~~~~~~~~~tiliA~Gf~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~eftms~g 84 (294)
T PF02273_consen 5 HVIRLEDGRQIRVWETRPKNNEPKRNNTILIAPGFARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINEFTMSIG 84 (294)
T ss_dssp EEEEETTTEEEEEEEE---TTS---S-EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B-------------HHHH
T ss_pred ceeEcCCCCEEEEeccCCCCCCcccCCeEEEecchhHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCChhhcchHHh
Confidence 34455 6788888877542 479999999999999999999999999999999998766 899988889999888
Q ss_pred HHHHHHHHHH---hCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHH
Q 005554 481 SELLRDFTVE---VVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLL 557 (691)
Q Consensus 481 a~dl~~ll~~---l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (691)
.+++..+++. .+..++-|+.-|+.|-+|+..|++- .+.-+|+..+..+.... .......
T Consensus 85 ~~sL~~V~dwl~~~g~~~~GLIAaSLSaRIAy~Va~~i--~lsfLitaVGVVnlr~T-----Le~al~~----------- 146 (294)
T PF02273_consen 85 KASLLTVIDWLATRGIRRIGLIAASLSARIAYEVAADI--NLSFLITAVGVVNLRDT-----LEKALGY----------- 146 (294)
T ss_dssp HHHHHHHHHHHHHTT---EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HHHH-----HHHHHSS-----------
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhhHHHHHHHhhcc--CcceEEEEeeeeeHHHH-----HHHHhcc-----------
Confidence 8888776654 5678899999999999999999853 48888877765331100 0000000
Q ss_pred HHHHHhhHHHHHHhhcCCCCc-------ccc-HHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEe
Q 005554 558 LFYLRLNISNFVKQCYPTRRE-------RAD-DWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQG 629 (691)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G 629 (691)
.++.......+. .+. +.+...-.... +..-......++.+.+|++.+++
T Consensus 147 ---------Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~--------------w~~l~ST~~~~k~l~iP~iaF~A 203 (294)
T PF02273_consen 147 ---------DYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHG--------------WDDLDSTINDMKRLSIPFIAFTA 203 (294)
T ss_dssp ----------GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT---------------SSHHHHHHHHTT--S-EEEEEE
T ss_pred ---------chhhcchhhCCCcccccccccchHHHHHHHHHcC--------------CccchhHHHHHhhCCCCEEEEEe
Confidence 000000000000 011 11111111111 11111234567889999999999
Q ss_pred CCCCCCChhHHHHHHHHhC-CCcEEEEe-CCCCCCC
Q 005554 630 IKDPISDSKSKVAMFKEHC-AGIVIREL-DAGHCPH 663 (691)
Q Consensus 630 ~~D~~vp~~~~~~~~~~~~-~~~~~~~~-~~GH~~~ 663 (691)
++|.++...+..+.+.... +.+++..+ |++|.+.
T Consensus 204 ~~D~WV~q~eV~~~~~~~~s~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 204 NDDDWVKQSEVEELLDNINSNKCKLYSLPGSSHDLG 239 (294)
T ss_dssp TT-TTS-HHHHHHHHTT-TT--EEEEEETT-SS-TT
T ss_pred CCCccccHHHHHHHHHhcCCCceeEEEecCccchhh
Confidence 9999999987777776554 45666666 9999765
No 109
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.11 E-value=6.9e-09 Score=102.50 Aligned_cols=174 Identities=17% Similarity=0.143 Sum_probs=126.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCC-cCCCCCC-c----------CCCHHHHHHHHHHHHHHhC---
Q 005554 428 PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGF-GRSEKPN-I----------VYTELMWSELLRDFTVEVV--- 492 (691)
Q Consensus 428 p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~-G~S~~~~-~----------~~s~~~~a~dl~~ll~~l~--- 492 (691)
|.||++|++.+-....+.+++.|++.||.|+++|+-+. |.+.... . ..+..+...|+.+.++.+.
T Consensus 28 P~VIv~hei~Gl~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~ 107 (236)
T COG0412 28 PGVIVLHEIFGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQP 107 (236)
T ss_pred CEEEEEecccCCchHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCC
Confidence 89999999988888999999999999999999998763 3322211 0 1223566777777777663
Q ss_pred ---CcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHH
Q 005554 493 ---GEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFV 569 (691)
Q Consensus 493 ---~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (691)
.+++.++|+||||.+++.++...| .|++.|..-+......
T Consensus 108 ~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~~------------------------------------ 150 (236)
T COG0412 108 QVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIADD------------------------------------ 150 (236)
T ss_pred CCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCCc------------------------------------
Confidence 356999999999999999999988 6999888776422100
Q ss_pred HhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhC-
Q 005554 570 KQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHC- 648 (691)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~- 648 (691)
. ....++++|+|++.|+.|..+|.+....+.+...
T Consensus 151 -------~-------------------------------------~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~ 186 (236)
T COG0412 151 -------T-------------------------------------ADAPKIKVPVLLHLAGEDPYIPAADVDALAAALED 186 (236)
T ss_pred -------c-------------------------------------cccccccCcEEEEecccCCCCChhHHHHHHHHHHh
Confidence 0 0024779999999999999999875444444333
Q ss_pred --CCcEEEEe-CCCCCCCccC-----------hHHHHHHHHHHHHhhh
Q 005554 649 --AGIVIREL-DAGHCPHDEK-----------PEEVNSIISEWIVTIE 682 (691)
Q Consensus 649 --~~~~~~~~-~~GH~~~~e~-----------pe~v~~~I~~fL~~~~ 682 (691)
....+.+. ++.|-.+.+. .+.-.+.+.+|+++..
T Consensus 187 ~~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~ 234 (236)
T COG0412 187 AGVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLL 234 (236)
T ss_pred cCCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 24667777 7779766432 2567788888988764
No 110
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.11 E-value=8.9e-09 Score=97.17 Aligned_cols=87 Identities=28% Similarity=0.326 Sum_probs=66.7
Q ss_pred EEEEcCCCCChHHHHH--HHHHHhcCC--CEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhH
Q 005554 430 ILLVHGFGAFLEHYRD--NIYDIADGG--NRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGG 505 (691)
Q Consensus 430 VlliHG~~~~~~~~~~--~~~~L~~~G--~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG 505 (691)
||++||+.++....+. +.+.+.+.+ ..++++|++ .+.....+.+..+++....+.+.|||.||||
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~-----------~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG 70 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP-----------PFPEEAIAQLEQLIEELKPENVVLIGSSLGG 70 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC-----------cCHHHHHHHHHHHHHhCCCCCeEEEEEChHH
Confidence 7999999888665543 455566554 456666664 2466677888889988887779999999999
Q ss_pred HHHHHHHHhCccccceEEEecCCCC
Q 005554 506 YFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 506 ~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
..|..+|.+++ +++ ||++|+..
T Consensus 71 ~~A~~La~~~~--~~a-vLiNPav~ 92 (187)
T PF05728_consen 71 FYATYLAERYG--LPA-VLINPAVR 92 (187)
T ss_pred HHHHHHHHHhC--CCE-EEEcCCCC
Confidence 99999999986 444 89999744
No 111
>COG0400 Predicted esterase [General function prediction only]
Probab=99.11 E-value=2e-09 Score=102.80 Aligned_cols=169 Identities=18% Similarity=0.194 Sum_probs=114.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCC--CCcC----CCCCCcCCCHH-------HHHHHHHHHHHHhCC
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLL--GFGR----SEKPNIVYTEL-------MWSELLRDFTVEVVG 493 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~--G~G~----S~~~~~~~s~~-------~~a~dl~~ll~~l~~ 493 (691)
.|+||++||+|++...+.+....+..+ +.++.+--+ -.|. +......++.+ .+++.+..+.+..++
T Consensus 18 ~~~iilLHG~Ggde~~~~~~~~~~~P~-~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~~~gi 96 (207)
T COG0400 18 APLLILLHGLGGDELDLVPLPELILPN-ATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAEEYGI 96 (207)
T ss_pred CcEEEEEecCCCChhhhhhhhhhcCCC-CeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHHHhCC
Confidence 668999999999999888866666664 666665311 0111 11111233333 345555556666666
Q ss_pred --cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHh
Q 005554 494 --EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQ 571 (691)
Q Consensus 494 --~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (691)
++++++|+|-||++++.+..++|+.++++|++++.......
T Consensus 97 ~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~------------------------------------- 139 (207)
T COG0400 97 DSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE------------------------------------- 139 (207)
T ss_pred ChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc-------------------------------------
Confidence 78999999999999999999999999999999985221000
Q ss_pred hcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHH---HHHHHhC
Q 005554 572 CYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKV---AMFKEHC 648 (691)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~---~~~~~~~ 648 (691)
. .-..-.+|+++++|..|++||..... +.+....
T Consensus 140 -----~--------------------------------------~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g 176 (207)
T COG0400 140 -----L--------------------------------------LPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASG 176 (207)
T ss_pred -----c--------------------------------------ccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcC
Confidence 0 00122679999999999999986433 3344445
Q ss_pred CCcEEEEeCCCCCCCccChHHHHHHHHHHHHh
Q 005554 649 AGIVIRELDAGHCPHDEKPEEVNSIISEWIVT 680 (691)
Q Consensus 649 ~~~~~~~~~~GH~~~~e~pe~v~~~I~~fL~~ 680 (691)
.++.....++||.+..+ ..+.+.+|+.+
T Consensus 177 ~~v~~~~~~~GH~i~~e----~~~~~~~wl~~ 204 (207)
T COG0400 177 ADVEVRWHEGGHEIPPE----ELEAARSWLAN 204 (207)
T ss_pred CCEEEEEecCCCcCCHH----HHHHHHHHHHh
Confidence 66777777899977654 34555667765
No 112
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.04 E-value=5.2e-09 Score=102.28 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHH-Hh------CCcCEEE
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV-EV------VGEPVHL 498 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~-~l------~~~~v~l 498 (691)
.=|.|||+||+......|..++++++.+||-|+++|+...+........-...+..+.+.+-++ .+ +..++.|
T Consensus 16 ~yPVv~f~~G~~~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l 95 (259)
T PF12740_consen 16 TYPVVLFLHGFLLINSWYSQLLEHVASHGYIVVAPDLYSIGGPDDTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLAL 95 (259)
T ss_pred CcCEEEEeCCcCCCHHHHHHHHHHHHhCceEEEEecccccCCCCcchhHHHHHHHHHHHHhcchhhccccccccccceEE
Confidence 3589999999998888899999999999999999997664432111111112222222222111 11 2368999
Q ss_pred EEeChhHHHHHHHHHhC-----ccccceEEEecCCC
Q 005554 499 IGNSIGGYFVAIVACLW-----PAVVKSVVLINSAG 529 (691)
Q Consensus 499 vGhS~GG~ial~~A~~~-----P~~V~~lVll~~~~ 529 (691)
.|||-||-++..++..+ +.+++++|+++|..
T Consensus 96 ~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 96 AGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred eeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 99999999999999887 55899999999974
No 113
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=99.01 E-value=1.7e-08 Score=105.74 Aligned_cols=275 Identities=17% Similarity=0.116 Sum_probs=153.2
Q ss_pred EEEEEEcCeEEEEEEe--C-CCCCeEEEEcCCCCChHHHHH------HHHHHhcCCCEEEEeCCCCCcCCCC-----C--
Q 005554 408 TRIWRWNGYQIQYTVA--G-KEGPAILLVHGFGAFLEHYRD------NIYDIADGGNRVWAITLLGFGRSEK-----P-- 471 (691)
Q Consensus 408 ~~~~~~~g~~i~y~~~--g-~~~p~VlliHG~~~~~~~~~~------~~~~L~~~G~~Vi~~D~~G~G~S~~-----~-- 471 (691)
..+.+.||+-+..... + .++|+|++.||+.+++..|.. ++-.|+++||.|+.-+.||--.|.. +
T Consensus 51 h~V~T~DgYiL~lhRIp~~~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RGn~ySr~h~~l~~~~ 130 (403)
T KOG2624|consen 51 HEVTTEDGYILTLHRIPRGKKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSPSS 130 (403)
T ss_pred EEEEccCCeEEEEeeecCCCCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcCcccchhhcccCCcC
Confidence 3444557765444332 2 357999999999999888853 4556889999999999999776653 1
Q ss_pred ---CcCCCHHHHH-----HHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCcc---ccceEEEecCCCCCCCchhhhhh
Q 005554 472 ---NIVYTELMWS-----ELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPA---VVKSVVLINSAGNVIPEYSFLQF 540 (691)
Q Consensus 472 ---~~~~s~~~~a-----~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~---~V~~lVll~~~~~~~~~~~~~~~ 540 (691)
.-++++.+++ +.|..+++.-+.++++.||||.|+.+...++...|+ +|+.+++++|+............
T Consensus 131 ~~~FW~FS~~Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k~~~~~~~~ 210 (403)
T KOG2624|consen 131 DKEFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPKHIKSLLNK 210 (403)
T ss_pred CcceeecchhhhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhcccccHHHH
Confidence 1245666654 344444555566899999999999999999888775 79999999998643311000000
Q ss_pred hhhh-------------hcCChhhh--hhHHHHH------HHHhhHHHHHHhhcC----------------CCCccccHH
Q 005554 541 SNER-------------QASGPIRL--GAQLLLF------YLRLNISNFVKQCYP----------------TRRERADDW 583 (691)
Q Consensus 541 ~~~~-------------~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~----------------~~~~~~~~~ 583 (691)
.... ...++... ....... ........++..... ..+......
T Consensus 211 ~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~~~~~~~~~h~pagtSvk 290 (403)
T KOG2624|consen 211 FLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNTTLLPVYLAHLPAGTSVK 290 (403)
T ss_pred hhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhhcccchhhccCCCCccHH
Confidence 0000 00000000 0000000 000000111111111 111111111
Q ss_pred HHHHHHHhcCCcchHH----HHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcE-EE--Ee
Q 005554 584 LISEMLRASYDPGVLV----VLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIV-IR--EL 656 (691)
Q Consensus 584 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~-~~--~~ 656 (691)
....+........+.. .......+....+....+.++++||.+.+|++|.++.+++....+........ .. +.
T Consensus 291 ~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~~~~~~~~ 370 (403)
T KOG2624|consen 291 NIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVIKYIVPIP 370 (403)
T ss_pred HHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHHHHHHhcccccccccccCC
Confidence 1111111110000000 00112222333444556788999999999999999999987666665543333 11 23
Q ss_pred CCCCCCCc---cChHHHHHHHHHHHHhhh
Q 005554 657 DAGHCPHD---EKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 657 ~~GH~~~~---e~pe~v~~~I~~fL~~~~ 682 (691)
+-.|+=++ +.++++.+.|.+.++...
T Consensus 371 ~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 371 EYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred CccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 77885443 458999999999998665
No 114
>PRK10115 protease 2; Provisional
Probab=99.00 E-value=4.6e-08 Score=111.79 Aligned_cols=122 Identities=13% Similarity=0.061 Sum_probs=90.2
Q ss_pred EEEEEcCeEEEE-EEe------CCCCCeEEEEcCCCCCh--HHHHHHHHHHhcCCCEEEEeCCCCCcCCCC--------C
Q 005554 409 RIWRWNGYQIQY-TVA------GKEGPAILLVHGFGAFL--EHYRDNIYDIADGGNRVWAITLLGFGRSEK--------P 471 (691)
Q Consensus 409 ~~~~~~g~~i~y-~~~------g~~~p~VlliHG~~~~~--~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~--------~ 471 (691)
.+...+|.+|.+ ..+ ..+.|+||++||..+.. ..|......|.++||.|+.++.||-|.=.. .
T Consensus 420 ~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~ 499 (686)
T PRK10115 420 WITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFL 499 (686)
T ss_pred EEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhh
Confidence 344568888885 222 12368999999976654 346666678888999999999999765432 1
Q ss_pred CcCCCHHHHHHHHHHHHHHh--CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 472 NIVYTELMWSELLRDFTVEV--VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 472 ~~~~s~~~~a~dl~~ll~~l--~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
....+++|+.+.+..+++.= ..+++.+.|.|.||+++..++.++|++++++|+..|..+
T Consensus 500 ~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D 560 (686)
T PRK10115 500 KKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVD 560 (686)
T ss_pred cCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchh
Confidence 12356777777666666441 226799999999999999999999999999999988643
No 115
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.99 E-value=5.2e-09 Score=97.73 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=61.7
Q ss_pred EEEEcCCCCC-hHHHHH-HHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHH
Q 005554 430 ILLVHGFGAF-LEHYRD-NIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYF 507 (691)
Q Consensus 430 VlliHG~~~~-~~~~~~-~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~i 507 (691)
|+++||++++ ...|.+ +.+.|... ++|..+|+ + .-+.++|.+.+.+.+..+. ++++|||||+|+..
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~------~----~P~~~~W~~~l~~~i~~~~-~~~ilVaHSLGc~~ 68 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDW------D----NPDLDEWVQALDQAIDAID-EPTILVAHSLGCLT 68 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC--------T----S--HHHHHHHHHHCCHC-T-TTEEEEEETHHHHH
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEecccc------C----CCCHHHHHHHHHHHHhhcC-CCeEEEEeCHHHHH
Confidence 6899999876 455665 44556665 78887776 1 2367788888887777653 56999999999999
Q ss_pred HHHHH-HhCccccceEEEecCC
Q 005554 508 VAIVA-CLWPAVVKSVVLINSA 528 (691)
Q Consensus 508 al~~A-~~~P~~V~~lVll~~~ 528 (691)
++.++ .....+|++++|++|+
T Consensus 69 ~l~~l~~~~~~~v~g~lLVAp~ 90 (171)
T PF06821_consen 69 ALRWLAEQSQKKVAGALLVAPF 90 (171)
T ss_dssp HHHHHHHTCCSSEEEEEEES--
T ss_pred HHHHHhhcccccccEEEEEcCC
Confidence 99999 6677899999999986
No 116
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.98 E-value=6.7e-08 Score=98.53 Aligned_cols=118 Identities=19% Similarity=0.111 Sum_probs=76.2
Q ss_pred cCeEEEEEEeCC------CCCeEEEEcCCCCCh-HHHHHH---------HHHHhcCCCEEEEeCCCCCcCCCCCCcCCCH
Q 005554 414 NGYQIQYTVAGK------EGPAILLVHGFGAFL-EHYRDN---------IYDIADGGNRVWAITLLGFGRSEKPNIVYTE 477 (691)
Q Consensus 414 ~g~~i~y~~~g~------~~p~VlliHG~~~~~-~~~~~~---------~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~ 477 (691)
||.+|....+-+ +-|+||..|+++... ...... ...++++||.|+..|.||.|.|.........
T Consensus 1 DGv~L~adv~~P~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~~~ 80 (272)
T PF02129_consen 1 DGVRLAADVYRPGADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPMSP 80 (272)
T ss_dssp TS-EEEEEEEEE--TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TTSH
T ss_pred CCCEEEEEEEecCCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccCCh
Confidence 466666544433 246899999998653 111111 1128899999999999999999976544332
Q ss_pred HHHHHH---HHHHHHHhCC--cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCC
Q 005554 478 LMWSEL---LRDFTVEVVG--EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVI 532 (691)
Q Consensus 478 ~~~a~d---l~~ll~~l~~--~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~ 532 (691)
.-++| +.+++..... .+|.++|.|++|..++.+|+..|..+++++...+.....
T Consensus 81 -~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~ 139 (272)
T PF02129_consen 81 -NEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLY 139 (272)
T ss_dssp -HHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTC
T ss_pred -hHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCccc
Confidence 23444 4444444433 579999999999999999998888899999988865443
No 117
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.96 E-value=1e-08 Score=97.74 Aligned_cols=101 Identities=23% Similarity=0.200 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHH---HHHHHHHHHHHh-------CCcCE
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELM---WSELLRDFTVEV-------VGEPV 496 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~---~a~dl~~ll~~l-------~~~~v 496 (691)
=|.|+|+||+......|..++.+++.+||-|+++++-..-. +...-.+++ .++.+..-++++ ++.++
T Consensus 46 yPVilF~HG~~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~---p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~kl 122 (307)
T PF07224_consen 46 YPVILFLHGFNLYNSFYSQLLAHIASHGFIVVAPQLYTLFP---PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKL 122 (307)
T ss_pred ccEEEEeechhhhhHHHHHHHHHHhhcCeEEEechhhcccC---CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceE
Confidence 47899999999999999999999999999999999865321 222222222 223333333332 23789
Q ss_pred EEEEeChhHHHHHHHHHhCc--cccceEEEecCCCC
Q 005554 497 HLIGNSIGGYFVAIVACLWP--AVVKSVVLINSAGN 530 (691)
Q Consensus 497 ~lvGhS~GG~ial~~A~~~P--~~V~~lVll~~~~~ 530 (691)
.++|||.||-.|..+|..+. -.+.+||-++|...
T Consensus 123 al~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G 158 (307)
T PF07224_consen 123 ALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAG 158 (307)
T ss_pred EEeecCCccHHHHHHHhcccccCchhheecccccCC
Confidence 99999999999999998874 25889999998643
No 118
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.95 E-value=1.4e-08 Score=126.89 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCC-cCEEEEEeChh
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG-EPVHLIGNSIG 504 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~-~~v~lvGhS~G 504 (691)
++++++|+||++++...|..++..|.. +++|+++|.+|+|.+ ....++++++++++.+.++.+.. .+++++|||||
T Consensus 1067 ~~~~l~~lh~~~g~~~~~~~l~~~l~~-~~~v~~~~~~g~~~~--~~~~~~l~~la~~~~~~i~~~~~~~p~~l~G~S~G 1143 (1296)
T PRK10252 1067 DGPTLFCFHPASGFAWQFSVLSRYLDP-QWSIYGIQSPRPDGP--MQTATSLDEVCEAHLATLLEQQPHGPYHLLGYSLG 1143 (1296)
T ss_pred CCCCeEEecCCCCchHHHHHHHHhcCC-CCcEEEEECCCCCCC--CCCCCCHHHHHHHHHHHHHhhCCCCCEEEEEechh
Confidence 468899999999999999999999976 499999999999865 23467999999999999988764 58999999999
Q ss_pred HHHHHHHHHh---CccccceEEEecCC
Q 005554 505 GYFVAIVACL---WPAVVKSVVLINSA 528 (691)
Q Consensus 505 G~ial~~A~~---~P~~V~~lVll~~~ 528 (691)
|.++..+|.+ .++++..++++++.
T Consensus 1144 g~vA~e~A~~l~~~~~~v~~l~l~~~~ 1170 (1296)
T PRK10252 1144 GTLAQGIAARLRARGEEVAFLGLLDTW 1170 (1296)
T ss_pred hHHHHHHHHHHHHcCCceeEEEEecCC
Confidence 9999999986 57789999999874
No 119
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.95 E-value=3.7e-08 Score=113.18 Aligned_cols=226 Identities=11% Similarity=-0.039 Sum_probs=120.1
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhC--------------------CcCEEEEEeChh
Q 005554 445 DNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV--------------------GEPVHLIGNSIG 504 (691)
Q Consensus 445 ~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~--------------------~~~v~lvGhS~G 504 (691)
.....|..+||.|+..|.||.|.|++....+..+ -.+|..++++-+. ..+|.++|.|+|
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~~~~~-E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~ 348 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCPTTGDYQ-EIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYL 348 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcCccCCHH-HHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHH
Confidence 3557788899999999999999998864333333 3344444443332 268999999999
Q ss_pred HHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHHH
Q 005554 505 GYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWL 584 (691)
Q Consensus 505 G~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (691)
|.+++.+|+..|+.++++|..++.......+....... ....+.......+... .................
T Consensus 349 G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~-~~~g~~ged~d~l~~~--------~~~r~~~~~~~~~~~~~ 419 (767)
T PRK05371 349 GTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVR-APGGYQGEDLDVLAEL--------TYSRNLLAGDYLRHNEA 419 (767)
T ss_pred HHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCcee-ccCCcCCcchhhHHHH--------hhhcccCcchhhcchHH
Confidence 99999999998888999999877643211100000000 0000000000000000 00000000000000000
Q ss_pred HHHHHHhcCCcchHHHH-HHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHh---CCCcEEEEeCCCC
Q 005554 585 ISEMLRASYDPGVLVVL-ESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEH---CAGIVIRELDAGH 660 (691)
Q Consensus 585 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~---~~~~~~~~~~~GH 660 (691)
.+........ ..... .....+....+....+.+|++|+|+|+|..|..++++...+.+..+ ....++.+.+++|
T Consensus 420 ~~~~~~~~~~--~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g~H 497 (767)
T PRK05371 420 CEKLLAELTA--AQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQGGH 497 (767)
T ss_pred HHHHHhhhhh--hhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 0100000000 00000 0000001122334567799999999999999999987555656544 2345665557889
Q ss_pred CCCc-cChHHHHHHHHHHHHhhh
Q 005554 661 CPHD-EKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 661 ~~~~-e~pe~v~~~I~~fL~~~~ 682 (691)
.... ..+.++.+.+..|++...
T Consensus 498 ~~~~~~~~~d~~e~~~~Wfd~~L 520 (767)
T PRK05371 498 VYPNNWQSIDFRDTMNAWFTHKL 520 (767)
T ss_pred cCCCchhHHHHHHHHHHHHHhcc
Confidence 6443 345677888888887653
No 120
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.94 E-value=6.3e-09 Score=106.16 Aligned_cols=256 Identities=16% Similarity=0.117 Sum_probs=138.7
Q ss_pred CCeEEEEcCCCCChHHH-----HHHHHHHhcCCCEEEEeCCCCCcCCCCCC--cCCCHHHHHHHHHHHHHHhCCcCEEEE
Q 005554 427 GPAILLVHGFGAFLEHY-----RDNIYDIADGGNRVWAITLLGFGRSEKPN--IVYTELMWSELLRDFTVEVVGEPVHLI 499 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~-----~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~--~~~s~~~~a~dl~~ll~~l~~~~v~lv 499 (691)
++|||++|-+-.....| ..++..|.++|+.|+.+++++=..+.... .+|-.+.+.+.+..+.+..+.+++.++
T Consensus 107 ~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~~~~~edYi~e~l~~aid~v~~itg~~~Inli 186 (445)
T COG3243 107 KRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYILEGLSEAIDTVKDITGQKDINLI 186 (445)
T ss_pred CCceEeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhhhccHHHHHHHHHHHHHHHHHHHhCcccccee
Confidence 67999999976554443 36888899999999999998765554321 233334444566666667777999999
Q ss_pred EeChhHHHHHHHHHhCccc-cceEEEecCCCCCCCchhh--------hhhhhh--hhcCChhhhhhHHHHHHH---HhhH
Q 005554 500 GNSIGGYFVAIVACLWPAV-VKSVVLINSAGNVIPEYSF--------LQFSNE--RQASGPIRLGAQLLLFYL---RLNI 565 (691)
Q Consensus 500 GhS~GG~ial~~A~~~P~~-V~~lVll~~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~ 565 (691)
|+|.||++...+++.++.+ |++++++.+..++...... ...... .....+..........+. ...+
T Consensus 187 GyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~~~g~l~if~n~~~~~~~~~~i~~~g~lpg~~ma~~F~mLrpndliw 266 (445)
T COG3243 187 GYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSHAGDLGIFANEATIEALDADIVQKGILPGWYMAIVFFLLRPNDLIW 266 (445)
T ss_pred eEecchHHHHHHHHhhhhcccccceeeecchhhccccccccccCHHHHHHHHhhhhhccCCChHHHHHHHHhcCccccch
Confidence 9999999999999999887 9999998876544321100 000000 000000000000000000 0011
Q ss_pred HHHHHhhcCCCCccccHHHHHHHHHhcCCcc--hHHHHHHHhcccc-------CcchHhhhcCCCCcEEEEEeCCCCCCC
Q 005554 566 SNFVKQCYPTRRERADDWLISEMLRASYDPG--VLVVLESIFSFKL-------SLPLNYLLEGFKEKVLIIQGIKDPISD 636 (691)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~l~~i~~PvLiI~G~~D~~vp 636 (691)
..++..+... .....-++.........-++ ....++.++.... -....-.+..|+||++++.|++|.++|
T Consensus 267 ~~fV~nyl~g-e~pl~fdllyWn~dst~~~~~~~~~~Lrn~y~~N~l~~g~~~v~G~~VdL~~It~pvy~~a~~~DhI~P 345 (445)
T COG3243 267 NYFVNNYLDG-EQPLPFDLLYWNADSTRLPGAAHSEYLRNFYLENRLIRGGLEVSGTMVDLGDITCPVYNLAAEEDHIAP 345 (445)
T ss_pred HHHHHHhcCC-CCCCchhHHHhhCCCccCchHHHHHHHHHHHHhChhhccceEECCEEechhhcccceEEEeecccccCC
Confidence 2222222211 11111111000000000000 1111212111110 001112577999999999999999999
Q ss_pred hhHHHHHHHHhCCC-cEEEEeCCCCCCCccCh-H----H----HHHHHHHHHHhhhCC
Q 005554 637 SKSKVAMFKEHCAG-IVIRELDAGHCPHDEKP-E----E----VNSIISEWIVTIESK 684 (691)
Q Consensus 637 ~~~~~~~~~~~~~~-~~~~~~~~GH~~~~e~p-e----~----v~~~I~~fL~~~~~~ 684 (691)
.+. .-..++..++ ++++..++||...+-+| . + .-..+..|+.+...+
T Consensus 346 ~~S-v~~g~~l~~g~~~f~l~~sGHIa~vVN~p~~~k~~~w~n~~~~~~~Wl~~a~~~ 402 (445)
T COG3243 346 WSS-VYLGARLLGGEVTFVLSRSGHIAGVVNPPGNAKYQYWTNLPADAEAWLSGAKEH 402 (445)
T ss_pred HHH-HHHHHHhcCCceEEEEecCceEEEEeCCcchhhhhcCCCCcchHHHHHHhhccC
Confidence 984 4555666666 55555599997665442 1 1 223677788775543
No 121
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite.; InterPro: IPR005101 This entry represents a multi-helical domain composed of two all-alpha subdomains that is found as the C-terminal domain in cryptochrome proteins, as well as at the N-terminal of DNA photolyase where it acts as a FAD-binding domain (the N-terminal of DNA photolyase binds a light-harvesting cofactor). Photolyases and cryptochromes are related flavoproteins that bind FAD. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes (CRY1 and CRY2) are blue light photoreceptors that mediate blue light-induced gene expression [, ]. DNA photolyases are DNA repair enzymes that repair mismatched pyrimidine dimers induced by exposure to ultra-violet light. They bind to UV-damaged DNA containing pyrimidine dimers and, upon absorbing a near-UV photon (300 to 500 nm), they catalyse dimer splitting, breaking the cyclobutane ring joining the two pyrimidines of the dimer so as to split them into the constituent monomers; this process is called photoreactivation. DNA photolyases require two choromophore-cofactors for their activity. All monomers contain a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm [, ].; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 3ZXS_A 1DNP_A 2XRZ_B 2XRY_A 2VTB_A 2J4D_B 2IJG_X 3TVS_A 2E0I_D ....
Probab=98.94 E-value=3.6e-10 Score=114.45 Aligned_cols=59 Identities=27% Similarity=0.402 Sum_probs=49.3
Q ss_pred cCchHHHHHHHHHHHhhcCCCCCchHHHHHHhhhhcCCCCCcccccccccccccccchhHHHHHHHHHhh
Q 005554 292 GGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFEK 361 (691)
Q Consensus 292 gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~LSpyL~~g~~~~~~~~~~~~~~~~ 361 (691)
|||++|+++|+.|++ +++..|.+.|| .|..++||+|||||+||+||+|+|++++.+...
T Consensus 1 GGe~~A~~~L~~Fl~----~~l~~Y~~~r~-------~p~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~ 59 (277)
T PF03441_consen 1 GGETAALKRLEEFLK----ERLADYGEQRD-------DPAADGTSRLSPYLNFGCLSPREVYRAVKKAQE 59 (277)
T ss_dssp SSHHHHHHHHHHHHH----HCGGGHHHHTT--------TTSTTS---HHHHHTTSS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH----HHHHhhchhcc-------CCCcCCcCcccHHHhCCCcCHHHHHHHHHHHhh
Confidence 899999999999994 78999999886 357789999999999999999999999988775
No 122
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.93 E-value=1e-07 Score=83.58 Aligned_cols=179 Identities=20% Similarity=0.234 Sum_probs=124.9
Q ss_pred CCeEEEEcCCCCC--hHHHHHHHHHHhcCCCEEEEeCCCCCcC-----CCCCC-cCCCHHHHHHHHHHHHHHhCCcCEEE
Q 005554 427 GPAILLVHGFGAF--LEHYRDNIYDIADGGNRVWAITLLGFGR-----SEKPN-IVYTELMWSELLRDFTVEVVGEPVHL 498 (691)
Q Consensus 427 ~p~VlliHG~~~~--~~~~~~~~~~L~~~G~~Vi~~D~~G~G~-----S~~~~-~~~s~~~~a~dl~~ll~~l~~~~v~l 498 (691)
.-+||+.||.|.+ +..+..++..|+.+|+.|..++++-.-. -.+|+ ...-...+...+.++...+...+.++
T Consensus 14 ~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~l~~gpLi~ 93 (213)
T COG3571 14 PVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAGLAEGPLII 93 (213)
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhcccCCceee
Confidence 3489999998776 5567778899999999999999875422 22222 22334567777888888887789999
Q ss_pred EEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCc
Q 005554 499 IGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRE 578 (691)
Q Consensus 499 vGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (691)
-|+||||-++.++|..-...|+++++++=+..+ +..++
T Consensus 94 GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------------------------------------pGKPe 131 (213)
T COG3571 94 GGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------------------------------------PGKPE 131 (213)
T ss_pred ccccccchHHHHHHHhhcCCcceEEEecCccCC------------------------------------------CCCcc
Confidence 999999999999887765569999998754211 01111
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-C
Q 005554 579 RADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-D 657 (691)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~ 657 (691)
.. -...+..+++|+||.+|+.|.+-..+.+... ...+..+++.+ +
T Consensus 132 ~~--------------------------------Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~y--~ls~~iev~wl~~ 177 (213)
T COG3571 132 QL--------------------------------RTEHLTGLKTPTLITQGTRDEFGTRDEVAGY--ALSDPIEVVWLED 177 (213)
T ss_pred cc--------------------------------hhhhccCCCCCeEEeecccccccCHHHHHhh--hcCCceEEEEecc
Confidence 10 0124678899999999999999887644221 23367788888 8
Q ss_pred CCCCCCc----------cChHHHHHHHHHHHHhh
Q 005554 658 AGHCPHD----------EKPEEVNSIISEWIVTI 681 (691)
Q Consensus 658 ~GH~~~~----------e~pe~v~~~I~~fL~~~ 681 (691)
+.|.+-- ++-...++.|..|+...
T Consensus 178 adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~l 211 (213)
T COG3571 178 ADHDLKPRKLVSGLSTADHLKTLAEQVAGWARRL 211 (213)
T ss_pred CccccccccccccccHHHHHHHHHHHHHHHHhhc
Confidence 8995432 22356677777887654
No 123
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.84 E-value=1.7e-07 Score=92.44 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=84.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCC-cCEEEEEeChhHH
Q 005554 428 PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG-EPVHLIGNSIGGY 506 (691)
Q Consensus 428 p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~-~~v~lvGhS~GG~ 506 (691)
|+|+++||.++....|..+...|... ..|+.++.||+|.- ....-+++++++...+-|..... .+++|+|||+||.
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~--~~~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG~ 77 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPL-LPVYGLQAPGYGAG--EQPFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGGA 77 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccC-ceeeccccCccccc--ccccCCHHHHHHHHHHHHHHhCCCCCEEEEeeccccH
Confidence 68999999999999999999999987 99999999999852 22345788888877777766654 7899999999999
Q ss_pred HHHHHHHhC---ccccceEEEecCCCC
Q 005554 507 FVAIVACLW---PAVVKSVVLINSAGN 530 (691)
Q Consensus 507 ial~~A~~~---P~~V~~lVll~~~~~ 530 (691)
+|..+|.+- -+.|..++++++...
T Consensus 78 vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 78 VAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred HHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 999999763 346999999998754
No 124
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.84 E-value=8.6e-08 Score=96.97 Aligned_cols=239 Identities=15% Similarity=0.121 Sum_probs=130.7
Q ss_pred CCCeEEEEcCCCCChHHHHH-H-HHHHhcCCCEEEEeCCCCCcCCCCCCc----CCCHHHH----------HHHHHHHHH
Q 005554 426 EGPAILLVHGFGAFLEHYRD-N-IYDIADGGNRVWAITLLGFGRSEKPNI----VYTELMW----------SELLRDFTV 489 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~-~-~~~L~~~G~~Vi~~D~~G~G~S~~~~~----~~s~~~~----------a~dl~~ll~ 489 (691)
.+|.+|.++|.|.+....+. + +..|.++|+..+.+..|-||.-.+... -.+..|+ +..+..+++
T Consensus 91 ~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~ 170 (348)
T PF09752_consen 91 YRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWLE 170 (348)
T ss_pred CCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHHH
Confidence 47889999999886554443 3 778888899999999999997654321 1122222 234445556
Q ss_pred HhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHH
Q 005554 490 EVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFV 569 (691)
Q Consensus 490 ~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (691)
..|..++.+.|.||||.+|...|+.+|..|..+-++++...... +. .........+. .+...+.........
T Consensus 171 ~~G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~v-Ft-----~Gvls~~i~W~--~L~~q~~~~~~~~~~ 242 (348)
T PF09752_consen 171 REGYGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVV-FT-----EGVLSNSINWD--ALEKQFEDTVYEEEI 242 (348)
T ss_pred hcCCCceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcc-hh-----hhhhhcCCCHH--HHHHHhcccchhhhh
Confidence 66889999999999999999999999987777767666422110 00 00000000000 000000000000000
Q ss_pred HhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhh-cCCCCcEEEEEeCCCCCCChhHHHHHHHHhC
Q 005554 570 KQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLL-EGFKEKVLIIQGIKDPISDSKSKVAMFKEHC 648 (691)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~ 648 (691)
. ......... .....................+... .++.+.. ..-.-.+.+|.+++|.++|.... ..+++..
T Consensus 243 ~-~~~~~~~~~---~~~~~~~~~~~~Ea~~~m~~~md~~--T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v-~~Lq~~W 315 (348)
T PF09752_consen 243 S-DIPAQNKSL---PLDSMEERRRDREALRFMRGVMDSF--THLTNFPVPVDPSAIIFVAAKNDAYVPRHGV-LSLQEIW 315 (348)
T ss_pred c-ccccCcccc---cchhhccccchHHHHHHHHHHHHhh--ccccccCCCCCCCcEEEEEecCceEechhhc-chHHHhC
Confidence 0 000000000 0000000000011111111111111 0111111 11223589999999999998744 4788999
Q ss_pred CCcEEEEeCCCCC-CCccChHHHHHHHHHHHH
Q 005554 649 AGIVIRELDAGHC-PHDEKPEEVNSIISEWIV 679 (691)
Q Consensus 649 ~~~~~~~~~~GH~-~~~e~pe~v~~~I~~fL~ 679 (691)
|++++.++++||. .++-+.+.|.++|.+-++
T Consensus 316 PGsEvR~l~gGHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 316 PGSEVRYLPGGHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred CCCeEEEecCCcEEEeeechHHHHHHHHHHhh
Confidence 9999999988994 445567889999887665
No 125
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.80 E-value=4.8e-08 Score=95.79 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhc--------CCCEEEEeCCCCCcCCCCCCcCCCHHHHH----HHHHHHHHHh--
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIAD--------GGNRVWAITLLGFGRSEKPNIVYTELMWS----ELLRDFTVEV-- 491 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~--------~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a----~dl~~ll~~l-- 491 (691)
.+.+||||||.+++...++.+...+.+ ..++++++|+......-. ...+.+.+ +.+..+++..
T Consensus 3 ~g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~---g~~l~~q~~~~~~~i~~i~~~~~~ 79 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFH---GRTLQRQAEFLAEAIKYILELYKS 79 (225)
T ss_pred CCCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCccccccc---cccHHHHHHHHHHHHHHHHHhhhh
Confidence 478999999999998888887766622 247899999876432211 22333333 3444444444
Q ss_pred ---CCcCEEEEEeChhHHHHHHHHHhCc---cccceEEEecCCCC
Q 005554 492 ---VGEPVHLIGNSIGGYFVAIVACLWP---AVVKSVVLINSAGN 530 (691)
Q Consensus 492 ---~~~~v~lvGhS~GG~ial~~A~~~P---~~V~~lVll~~~~~ 530 (691)
+.+++++|||||||.++..++...+ +.|+.+|.++++..
T Consensus 80 ~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~ 124 (225)
T PF07819_consen 80 NRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHR 124 (225)
T ss_pred ccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCC
Confidence 4478999999999999988876543 47999999998744
No 126
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3.4e-07 Score=86.54 Aligned_cols=246 Identities=15% Similarity=0.138 Sum_probs=140.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhcC-C--CEEEEeCCCCCcCCC---C------CCcCCCHHHHHHHHHHHHHHhCC
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIADG-G--NRVWAITLLGFGRSE---K------PNIVYTELMWSELLRDFTVEVVG 493 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~~-G--~~Vi~~D~~G~G~S~---~------~~~~~s~~~~a~dl~~ll~~l~~ 493 (691)
+++.+++|+|.+|....|.+++..|... + +.++.+-..||-.-+ . ..+-++++++++.-.++++..-.
T Consensus 28 ~~~li~~IpGNPG~~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik~~~P 107 (301)
T KOG3975|consen 28 DKPLIVWIPGNPGLLGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIKEYVP 107 (301)
T ss_pred CceEEEEecCCCCchhHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHHHhCC
Confidence 4778999999999999999999887653 1 558998888886533 1 12467899999999999987644
Q ss_pred --cCEEEEEeChhHHHHHHHHHhCc--cccceEEEecCCCCCCCch-hhhhhhhhhh-cCChhhhhhHHHHHHHHhhHHH
Q 005554 494 --EPVHLIGNSIGGYFVAIVACLWP--AVVKSVVLINSAGNVIPEY-SFLQFSNERQ-ASGPIRLGAQLLLFYLRLNISN 567 (691)
Q Consensus 494 --~~v~lvGhS~GG~ial~~A~~~P--~~V~~lVll~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 567 (691)
.+++++|||.|+++.+.+..... -.|.+++++-|..-...+. .......... ......+...+...+.+...+.
T Consensus 108 k~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTIerM~eSpnG~~~t~~l~~~~hv~~lt~yi~~~~lp~~ir~ 187 (301)
T KOG3975|consen 108 KDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTIERMHESPNGIRLTKVLRYLPHVVSLTSYIYWILLPGFIRF 187 (301)
T ss_pred CCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchHHHHhcCCCceEeeeeeeeehhhhheeeeeeeecChHHHHH
Confidence 67999999999999999886432 2588888887752111000 0000000000 0000000000111111222222
Q ss_pred HHHhhcCCCCccccHHHHHHHH--------HhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhH
Q 005554 568 FVKQCYPTRRERADDWLISEML--------RASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKS 639 (691)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~ 639 (691)
++-....... ....++....+ +.....+..++ ..... ...+.+++-.+-+.+.+|..|.+||.+
T Consensus 188 ~Li~~~l~~~-n~p~e~l~tal~l~h~~v~rn~v~la~qEm-~eV~~-----~d~e~~een~d~l~Fyygt~DgW~p~~- 259 (301)
T KOG3975|consen 188 ILIKFMLCGS-NGPQEFLSTALFLTHPQVVRNSVGLAAQEM-EEVTT-----RDIEYCEENLDSLWFYYGTNDGWVPSH- 259 (301)
T ss_pred HHHHHhcccC-CCcHHHHhhHHHhhcHHHHHHHhhhchHHH-HHHHH-----hHHHHHHhcCcEEEEEccCCCCCcchH-
Confidence 2222111111 11111111110 00000000000 00000 112234455678899999999999987
Q ss_pred HHHHHHHhCCCcEEEEe--CCCCCCCccChHHHHHHHHHHHH
Q 005554 640 KVAMFKEHCAGIVIREL--DAGHCPHDEKPEEVNSIISEWIV 679 (691)
Q Consensus 640 ~~~~~~~~~~~~~~~~~--~~GH~~~~e~pe~v~~~I~~fL~ 679 (691)
....+++..|...+.+- ++-|.......+.++..+.+.++
T Consensus 260 ~~d~~kdd~~eed~~Ldedki~HAFV~~~~q~ma~~v~d~~~ 301 (301)
T KOG3975|consen 260 YYDYYKDDVPEEDLKLDEDKIPHAFVVKHAQYMANAVFDMIQ 301 (301)
T ss_pred HHHHHhhhcchhceeeccccCCcceeecccHHHHHHHHHhhC
Confidence 56777777776666554 79999999999999998887653
No 127
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.75 E-value=1e-07 Score=93.11 Aligned_cols=164 Identities=21% Similarity=0.215 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHH----HhcCCCEEEEeCCC-----CCcCCC------------CCC-----------c
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYD----IADGGNRVWAITLL-----GFGRSE------------KPN-----------I 473 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~----L~~~G~~Vi~~D~~-----G~G~S~------------~~~-----------~ 473 (691)
.++-||++||++.+...++..... |.+.++.++.+|-| +-|... .+. .
T Consensus 3 ~k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 82 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDHE 82 (212)
T ss_dssp ---EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SGG
T ss_pred CCceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCccc
Confidence 367899999999999999865544 44426899888843 222111 000 0
Q ss_pred CCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCc--------cccceEEEecCCCCCCCchhhhhhhhhhh
Q 005554 474 VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWP--------AVVKSVVLINSAGNVIPEYSFLQFSNERQ 545 (691)
Q Consensus 474 ~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P--------~~V~~lVll~~~~~~~~~~~~~~~~~~~~ 545 (691)
...+++..+.|.+.++..+. -..|+|+|.||.+|..++.... ..++-+|++++.....+.
T Consensus 83 ~~~~~~sl~~l~~~i~~~GP-fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~----------- 150 (212)
T PF03959_consen 83 YEGLDESLDYLRDYIEENGP-FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD----------- 150 (212)
T ss_dssp G---HHHHHHHHHHHHHH----SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE------------
T ss_pred ccCHHHHHHHHHHHHHhcCC-eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh-----------
Confidence 22355566666666666542 2469999999999998886421 247888998875221000
Q ss_pred cCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEE
Q 005554 546 ASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVL 625 (691)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvL 625 (691)
+. ..+ ....|++|+|
T Consensus 151 ---------------------------~~----------------------------~~~----------~~~~i~iPtl 165 (212)
T PF03959_consen 151 ---------------------------YQ----------------------------ELY----------DEPKISIPTL 165 (212)
T ss_dssp ---------------------------GT----------------------------TTT------------TT---EEE
T ss_pred ---------------------------hh----------------------------hhh----------ccccCCCCeE
Confidence 00 000 1346799999
Q ss_pred EEEeCCCCCCChhHHHHHHHHhCCC-cEEEEeCCCCCCCccCh
Q 005554 626 IIQGIKDPISDSKSKVAMFKEHCAG-IVIRELDAGHCPHDEKP 667 (691)
Q Consensus 626 iI~G~~D~~vp~~~~~~~~~~~~~~-~~~~~~~~GH~~~~e~p 667 (691)
-|+|.+|.+++++.. +.+.+.+.+ .+++..++||.+.....
T Consensus 166 Hv~G~~D~~~~~~~s-~~L~~~~~~~~~v~~h~gGH~vP~~~~ 207 (212)
T PF03959_consen 166 HVIGENDPVVPPERS-EALAEMFDPDARVIEHDGGHHVPRKKE 207 (212)
T ss_dssp EEEETT-SSS-HHHH-HHHHHHHHHHEEEEEESSSSS----HH
T ss_pred EEEeCCCCCcchHHH-HHHHHhccCCcEEEEECCCCcCcCChh
Confidence 999999999998744 444555544 56666699998876643
No 128
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.74 E-value=1.2e-07 Score=92.86 Aligned_cols=98 Identities=20% Similarity=0.110 Sum_probs=64.0
Q ss_pred EEEEcCCCC---ChHHHHHHHHHHhc-CCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHH-----hCCcCEEEEE
Q 005554 430 ILLVHGFGA---FLEHYRDNIYDIAD-GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE-----VVGEPVHLIG 500 (691)
Q Consensus 430 VlliHG~~~---~~~~~~~~~~~L~~-~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~-----l~~~~v~lvG 500 (691)
||++||.+- +......++..+++ .|+.|+.+|+|=.... ..+-.++|..+.+..++++ .+.++++|+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~---~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G 77 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEA---PFPAALEDVKAAYRWLLKNADKLGIDPERIVLIG 77 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTS---STTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccc---cccccccccccceeeeccccccccccccceEEee
Confidence 799999753 34444566666664 7999999999843221 1122345555555555555 3347899999
Q ss_pred eChhHHHHHHHHHhCcc----ccceEEEecCCCC
Q 005554 501 NSIGGYFVAIVACLWPA----VVKSVVLINSAGN 530 (691)
Q Consensus 501 hS~GG~ial~~A~~~P~----~V~~lVll~~~~~ 530 (691)
+|.||.+++.++....+ .++++++++|...
T Consensus 78 ~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d 111 (211)
T PF07859_consen 78 DSAGGHLALSLALRARDRGLPKPKGIILISPWTD 111 (211)
T ss_dssp ETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSS
T ss_pred cccccchhhhhhhhhhhhcccchhhhhccccccc
Confidence 99999999999976443 3899999999643
No 129
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=98.71 E-value=3.7e-06 Score=91.55 Aligned_cols=124 Identities=18% Similarity=0.147 Sum_probs=84.7
Q ss_pred EEEEEEc----CeEEEEEEeCC-----CCCeEEEEcCCCCChHHHHHHHH-----------HHhc------CCCEEEEeC
Q 005554 408 TRIWRWN----GYQIQYTVAGK-----EGPAILLVHGFGAFLEHYRDNIY-----------DIAD------GGNRVWAIT 461 (691)
Q Consensus 408 ~~~~~~~----g~~i~y~~~g~-----~~p~VlliHG~~~~~~~~~~~~~-----------~L~~------~G~~Vi~~D 461 (691)
.-++.++ +..++|.-... +.|.||+++|.++++..+--+.+ .+.. +-.+++.+|
T Consensus 49 sGy~~v~~~~~~~~lFyw~~~s~~~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~iD 128 (462)
T PTZ00472 49 SGYFDIPGNQTDKHYFYWAFGPRNGNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYVD 128 (462)
T ss_pred eEEEEeCCCCCCceEEEEEEEcCCCCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEEEe
Confidence 3456664 45677765542 26899999999888765522211 1111 126799999
Q ss_pred CC-CCcCCCCCC--cCCCHHHHHHHHHHHHHHh-------CCcCEEEEEeChhHHHHHHHHHhC----------ccccce
Q 005554 462 LL-GFGRSEKPN--IVYTELMWSELLRDFTVEV-------VGEPVHLIGNSIGGYFVAIVACLW----------PAVVKS 521 (691)
Q Consensus 462 ~~-G~G~S~~~~--~~~s~~~~a~dl~~ll~~l-------~~~~v~lvGhS~GG~ial~~A~~~----------P~~V~~ 521 (691)
.| |+|.|.... ...+.++.++|+.++++.+ +..+++|+|||+||.++..+|.+. +-.+++
T Consensus 129 qP~G~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkG 208 (462)
T PTZ00472 129 QPAGVGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAG 208 (462)
T ss_pred CCCCcCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEE
Confidence 75 888886533 2345678888988888743 347899999999999998888652 124789
Q ss_pred EEEecCCCCC
Q 005554 522 VVLINSAGNV 531 (691)
Q Consensus 522 lVll~~~~~~ 531 (691)
+++-++...+
T Consensus 209 i~IGNg~~dp 218 (462)
T PTZ00472 209 LAVGNGLTDP 218 (462)
T ss_pred EEEeccccCh
Confidence 9998886543
No 130
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.69 E-value=8e-07 Score=88.07 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=69.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHh-cCCC--EE--EEeCCCCC----cCC----CCCC------cC--CCHHHHHHHHH
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIA-DGGN--RV--WAITLLGF----GRS----EKPN------IV--YTELMWSELLR 485 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~-~~G~--~V--i~~D~~G~----G~S----~~~~------~~--~s~~~~a~dl~ 485 (691)
..|.|||||++++...+..++..+. +.|. .+ +.++.-|. |.= ..|- .. -+....+..+.
T Consensus 11 ~tPTifihG~~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl~ 90 (255)
T PF06028_consen 11 TTPTIFIHGYGGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWLK 90 (255)
T ss_dssp -EEEEEE--TTGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHHH
T ss_pred CCcEEEECCCCCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 5689999999999999999999997 6653 23 33333333 211 1110 12 35677788888
Q ss_pred HHHHHh----CCcCEEEEEeChhHHHHHHHHHhCcc-----ccceEEEecCCCCC
Q 005554 486 DFTVEV----VGEPVHLIGNSIGGYFVAIVACLWPA-----VVKSVVLINSAGNV 531 (691)
Q Consensus 486 ~ll~~l----~~~~v~lvGhS~GG~ial~~A~~~P~-----~V~~lVll~~~~~~ 531 (691)
.++..| +.+++.+|||||||..++.++..+-. .+.++|.++++...
T Consensus 91 ~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng 145 (255)
T PF06028_consen 91 KVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNG 145 (255)
T ss_dssp HHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTT
T ss_pred HHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCc
Confidence 877665 56899999999999999999887532 58999999987554
No 131
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=98.66 E-value=5.2e-07 Score=84.35 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=116.5
Q ss_pred EEEcCeEEEEEEeCCCCCeEEEEcCCCC-ChHHHHHHHHHHhcCCCEEEEeCCC-CCcCCCC-CC-------cCCCHHHH
Q 005554 411 WRWNGYQIQYTVAGKEGPAILLVHGFGA-FLEHYRDNIYDIADGGNRVWAITLL-GFGRSEK-PN-------IVYTELMW 480 (691)
Q Consensus 411 ~~~~g~~i~y~~~g~~~p~VlliHG~~~-~~~~~~~~~~~L~~~G~~Vi~~D~~-G~G~S~~-~~-------~~~s~~~~ 480 (691)
.++.|.+-+..-...++..||++--+.+ ....-+..+..++..||.|+.+|+. |--.|.. .. ...+..-.
T Consensus 23 ~~v~gldaYv~gs~~~~~~li~i~DvfG~~~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~ 102 (242)
T KOG3043|consen 23 EEVGGLDAYVVGSTSSKKVLIVIQDVFGFQFPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKI 102 (242)
T ss_pred EeecCeeEEEecCCCCCeEEEEEEeeeccccHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccc
Confidence 3445544433333323446666666544 4444678889999999999999964 3111211 00 12222223
Q ss_pred HHHHHHHHHH---hC-CcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHH
Q 005554 481 SELLRDFTVE---VV-GEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQL 556 (691)
Q Consensus 481 a~dl~~ll~~---l~-~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (691)
-.++..+++. .+ .+++-++|.+|||.++..+....| .+.+++.+-|...
T Consensus 103 ~~~i~~v~k~lk~~g~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~~-------------------------- 155 (242)
T KOG3043|consen 103 WKDITAVVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSFV-------------------------- 155 (242)
T ss_pred hhHHHHHHHHHHHcCCcceeeEEEEeecceEEEEeeccch-hheeeeEecCCcC--------------------------
Confidence 3444444443 34 477999999999999999888887 5777777765310
Q ss_pred HHHHHHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCC
Q 005554 557 LLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISD 636 (691)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp 636 (691)
+ ...+..+++|||++.|+.|..+|
T Consensus 156 -------------------------------------------------------d-~~D~~~vk~Pilfl~ae~D~~~p 179 (242)
T KOG3043|consen 156 -------------------------------------------------------D-SADIANVKAPILFLFAELDEDVP 179 (242)
T ss_pred -------------------------------------------------------C-hhHHhcCCCCEEEEeecccccCC
Confidence 0 01345778999999999999999
Q ss_pred hhHHHHHHHHhCC----CcEEEEe-CCCCCCCc-----cCh------HHHHHHHHHHHHhh
Q 005554 637 SKSKVAMFKEHCA----GIVIREL-DAGHCPHD-----EKP------EEVNSIISEWIVTI 681 (691)
Q Consensus 637 ~~~~~~~~~~~~~----~~~~~~~-~~GH~~~~-----e~p------e~v~~~I~~fL~~~ 681 (691)
++...++-+.... +.++.+. +.+|-.+. +.| |+..+.+.+|++..
T Consensus 180 ~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y 240 (242)
T KOG3043|consen 180 PKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHY 240 (242)
T ss_pred HHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHh
Confidence 9854443332222 2356777 78885552 334 56677778888764
No 132
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.64 E-value=2.2e-06 Score=82.95 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=71.3
Q ss_pred CCeEEEEcCCCCChHHHHHH--HHHHhc-CCCEEEEeCCCCCcCCCC---------CCcCCCHHHHHHHHHHHHHHhCC-
Q 005554 427 GPAILLVHGFGAFLEHYRDN--IYDIAD-GGNRVWAITLLGFGRSEK---------PNIVYTELMWSELLRDFTVEVVG- 493 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~--~~~L~~-~G~~Vi~~D~~G~G~S~~---------~~~~~s~~~~a~dl~~ll~~l~~- 493 (691)
.|.||++||.+.+...+... +..|++ +||-|+.++......... ....-....++..+..+..+..+
T Consensus 16 ~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD 95 (220)
T PF10503_consen 16 VPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAARYNID 95 (220)
T ss_pred CCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhhcccC
Confidence 57999999999998876542 334554 489999888542111100 01111233344555555556555
Q ss_pred -cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCC
Q 005554 494 -EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529 (691)
Q Consensus 494 -~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~ 529 (691)
.+|++.|+|.||+++..++..||+.+.++..+++..
T Consensus 96 ~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~ 132 (220)
T PF10503_consen 96 PSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVP 132 (220)
T ss_pred CCceeeEEECHHHHHHHHHHHhCCccceEEEeecccc
Confidence 579999999999999999999999999998888753
No 133
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.63 E-value=4.3e-07 Score=84.00 Aligned_cols=95 Identities=23% Similarity=0.224 Sum_probs=75.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHH----hCCcCEEEEEeChh
Q 005554 429 AILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE----VVGEPVHLIGNSIG 504 (691)
Q Consensus 429 ~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~----l~~~~v~lvGhS~G 504 (691)
.+||+-|=|+....=..+++.|+++|+.|+.+|-+-|=.+.+ +.++.+.|+..++++ .+.++++|||+|+|
T Consensus 4 ~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~~r-----tP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFG 78 (192)
T PF06057_consen 4 LAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFWSER-----TPEQTAADLARIIRHYRARWGRKRVVLIGYSFG 78 (192)
T ss_pred EEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHhhhC-----CHHHHHHHHHHHHHHHHHHhCCceEEEEeecCC
Confidence 578888877776665678999999999999999776665543 556667777777654 46689999999999
Q ss_pred HHHHHHHHHhCcc----ccceEEEecCC
Q 005554 505 GYFVAIVACLWPA----VVKSVVLINSA 528 (691)
Q Consensus 505 G~ial~~A~~~P~----~V~~lVll~~~ 528 (691)
+-+.-....+-|. +|+.++|+++.
T Consensus 79 ADvlP~~~nrLp~~~r~~v~~v~Ll~p~ 106 (192)
T PF06057_consen 79 ADVLPFIYNRLPAALRARVAQVVLLSPS 106 (192)
T ss_pred chhHHHHHhhCCHHHHhheeEEEEeccC
Confidence 9888888777664 79999999986
No 134
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.60 E-value=2.6e-07 Score=98.89 Aligned_cols=96 Identities=23% Similarity=0.220 Sum_probs=74.6
Q ss_pred CCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc--CCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHh
Q 005554 437 GAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI--VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 437 ~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~--~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~ 514 (691)
......|..+++.|.+.||.+ ..|++|+|.+.+... ...++++.+.+.++.+..+.++++|+||||||.+++.++..
T Consensus 104 ~~~~~~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~ 182 (440)
T PLN02733 104 LDEVYYFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSNRLPETMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSL 182 (440)
T ss_pred cchHHHHHHHHHHHHHcCCcc-CCCcccCCCCccccccHHHHHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHH
Confidence 345688999999999999765 889999999876532 22344555555666666777899999999999999999998
Q ss_pred Ccc----ccceEEEecCCCCCCC
Q 005554 515 WPA----VVKSVVLINSAGNVIP 533 (691)
Q Consensus 515 ~P~----~V~~lVll~~~~~~~~ 533 (691)
+|+ .|+++|+++++....+
T Consensus 183 ~p~~~~k~I~~~I~la~P~~Gs~ 205 (440)
T PLN02733 183 HSDVFEKYVNSWIAIAAPFQGAP 205 (440)
T ss_pred CCHhHHhHhccEEEECCCCCCCc
Confidence 886 4799999988754433
No 135
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.59 E-value=2.6e-06 Score=76.95 Aligned_cols=172 Identities=15% Similarity=0.172 Sum_probs=107.9
Q ss_pred CeEEEEcCCCCC-hHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHH
Q 005554 428 PAILLVHGFGAF-LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGY 506 (691)
Q Consensus 428 p~VlliHG~~~~-~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ 506 (691)
+.+|+|||+.++ ...|....+.=.. .+-.+++.. ...-..++|.+.+...+... .++++||+||+|+.
T Consensus 3 ~~~lIVpG~~~Sg~~HWq~~we~~l~---~a~rveq~~-------w~~P~~~dWi~~l~~~v~a~-~~~~vlVAHSLGc~ 71 (181)
T COG3545 3 TDVLIVPGYGGSGPNHWQSRWESALP---NARRVEQDD-------WEAPVLDDWIARLEKEVNAA-EGPVVLVAHSLGCA 71 (181)
T ss_pred ceEEEecCCCCCChhHHHHHHHhhCc---cchhcccCC-------CCCCCHHHHHHHHHHHHhcc-CCCeEEEEecccHH
Confidence 578999998766 4556554433111 122222211 12336888888888888777 46799999999999
Q ss_pred HHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHHHHH
Q 005554 507 FVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLIS 586 (691)
Q Consensus 507 ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (691)
.++.++......|+|++|++|+.-..+. ....
T Consensus 72 ~v~h~~~~~~~~V~GalLVAppd~~~~~-----------------------------~~~~------------------- 103 (181)
T COG3545 72 TVAHWAEHIQRQVAGALLVAPPDVSRPE-----------------------------IRPK------------------- 103 (181)
T ss_pred HHHHHHHhhhhccceEEEecCCCccccc-----------------------------cchh-------------------
Confidence 9999998877789999999986211000 0000
Q ss_pred HHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEeCCCCCCCcc-
Q 005554 587 EMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIRELDAGHCPHDE- 665 (691)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~GH~~~~e- 665 (691)
..+.+.. . ...+...|.+++...+|++++.+. .+.+++......+.+-++||+.-..
T Consensus 104 ----------------~~~tf~~-~----p~~~lpfps~vvaSrnDp~~~~~~-a~~~a~~wgs~lv~~g~~GHiN~~sG 161 (181)
T COG3545 104 ----------------HLMTFDP-I----PREPLPFPSVVVASRNDPYVSYEH-AEDLANAWGSALVDVGEGGHINAESG 161 (181)
T ss_pred ----------------hccccCC-C----ccccCCCceeEEEecCCCCCCHHH-HHHHHHhccHhheecccccccchhhc
Confidence 0000000 0 123456799999999999999985 4555555555444444899965433
Q ss_pred --ChHHHHHHHHHHHHh
Q 005554 666 --KPEEVNSIISEWIVT 680 (691)
Q Consensus 666 --~pe~v~~~I~~fL~~ 680 (691)
.-.+....+.+|+.+
T Consensus 162 ~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 162 FGPWPEGYALLAQLLSR 178 (181)
T ss_pred CCCcHHHHHHHHHHhhh
Confidence 334555666666654
No 136
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.57 E-value=5.6e-07 Score=82.47 Aligned_cols=198 Identities=9% Similarity=0.053 Sum_probs=115.1
Q ss_pred EEEeCC--CCCeEEEEcCC---CCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC-cCCCHHHHHHHHHHHHHHhCC
Q 005554 420 YTVAGK--EGPAILLVHGF---GAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVVG 493 (691)
Q Consensus 420 y~~~g~--~~p~VlliHG~---~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-~~~s~~~~a~dl~~ll~~l~~ 493 (691)
...+|+ ..+.+|||||. -++...-..++..+.+.||+|..+ |++.+.... -.-++.+...-+.-+++...-
T Consensus 58 VDIwg~~~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasv---gY~l~~q~htL~qt~~~~~~gv~filk~~~n 134 (270)
T KOG4627|consen 58 VDIWGSTNQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASV---GYNLCPQVHTLEQTMTQFTHGVNFILKYTEN 134 (270)
T ss_pred EEEecCCCCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEe---ccCcCcccccHHHHHHHHHHHHHHHHHhccc
Confidence 344553 37899999995 233333334566666789999998 556654432 122444555555555555544
Q ss_pred -cCEEEEEeChhHHHHHHHHHh-CccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHh
Q 005554 494 -EPVHLIGNSIGGYFVAIVACL-WPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQ 571 (691)
Q Consensus 494 -~~v~lvGhS~GG~ial~~A~~-~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (691)
+.+.+-|||.|+.+|+.+..+ +..+|.+++++++.... ..+...
T Consensus 135 ~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l----------------------------------~EL~~t 180 (270)
T KOG4627|consen 135 TKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDL----------------------------------RELSNT 180 (270)
T ss_pred ceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhH----------------------------------HHHhCC
Confidence 456677999999999987765 34489999998875221 000000
Q ss_pred hcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCc
Q 005554 572 CYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGI 651 (691)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~ 651 (691)
-+... -.+..... .........+..++.|+|++.|.+|.-.-.+ +.+.+......+
T Consensus 181 e~g~d-lgLt~~~a----------------------e~~Scdl~~~~~v~~~ilVv~~~~espklie-Qnrdf~~q~~~a 236 (270)
T KOG4627|consen 181 ESGND-LGLTERNA----------------------ESVSCDLWEYTDVTVWILVVAAEHESPKLIE-QNRDFADQLRKA 236 (270)
T ss_pred ccccc-cCcccchh----------------------hhcCccHHHhcCceeeeeEeeecccCcHHHH-hhhhHHHHhhhc
Confidence 00000 00000000 0001112346788999999999999754445 445566666667
Q ss_pred EEEEe-CCCCCCCccCh----HHHHHHHHHHH
Q 005554 652 VIREL-DAGHCPHDEKP----EEVNSIISEWI 678 (691)
Q Consensus 652 ~~~~~-~~GH~~~~e~p----e~v~~~I~~fL 678 (691)
.+... +.+|+-.++.. ..+...+.+|+
T Consensus 237 ~~~~f~n~~hy~I~~~~~~~~s~~~~~~~~~~ 268 (270)
T KOG4627|consen 237 SFTLFKNYDHYDIIEETAIDDSDVSRFLRNIE 268 (270)
T ss_pred ceeecCCcchhhHHHHhccccchHHHHHHHHh
Confidence 77777 88998777653 34444444443
No 137
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.53 E-value=1.6e-07 Score=99.43 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCC------CC-----C-------C------cCC------
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRS------EK-----P-------N------IVY------ 475 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S------~~-----~-------~------~~~------ 475 (691)
.-|.|||-||++++...|..++..|+.+||-|+++|.|..-.+ +. . . ...
T Consensus 99 ~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (379)
T PF03403_consen 99 KFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPEEEF 178 (379)
T ss_dssp -EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GGGHH
T ss_pred CCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccchhHH
Confidence 3589999999999999999999999999999999999853111 00 0 0 000
Q ss_pred C-----HHHHHHHHHHHHHHh--------------------------CCcCEEEEEeChhHHHHHHHHHhCccccceEEE
Q 005554 476 T-----ELMWSELLRDFTVEV--------------------------VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVL 524 (691)
Q Consensus 476 s-----~~~~a~dl~~ll~~l--------------------------~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVl 524 (691)
. ++.-+.++..+++.+ +..++.++|||+||..++..+.+. .++++.|+
T Consensus 179 ~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~~I~ 257 (379)
T PF03403_consen 179 ELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKAGIL 257 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--EEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcceEEE
Confidence 0 001122333333221 125699999999999999988876 57999999
Q ss_pred ecCC
Q 005554 525 INSA 528 (691)
Q Consensus 525 l~~~ 528 (691)
+++.
T Consensus 258 LD~W 261 (379)
T PF03403_consen 258 LDPW 261 (379)
T ss_dssp ES--
T ss_pred eCCc
Confidence 9985
No 138
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=98.50 E-value=1e-05 Score=83.28 Aligned_cols=102 Identities=19% Similarity=0.044 Sum_probs=74.4
Q ss_pred CCeEEEEcCCCC-----ChHHHHHHHHHHhc-CCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHH------hCCc
Q 005554 427 GPAILLVHGFGA-----FLEHYRDNIYDIAD-GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE------VVGE 494 (691)
Q Consensus 427 ~p~VlliHG~~~-----~~~~~~~~~~~L~~-~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~------l~~~ 494 (691)
.|.||++||+|. ....|..+...++. .+.-|+.+|+|=--+.. -+..++|..+.+..+.++ .+.+
T Consensus 90 ~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~---~Pa~y~D~~~Al~w~~~~~~~~~~~D~~ 166 (336)
T KOG1515|consen 90 LPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHP---FPAAYDDGWAALKWVLKNSWLKLGADPS 166 (336)
T ss_pred ceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCC---CCccchHHHHHHHHHHHhHHHHhCCCcc
Confidence 578999999753 35678888888754 47889999988433222 234566666666666653 2447
Q ss_pred CEEEEEeChhHHHHHHHHHhC------ccccceEEEecCCCCC
Q 005554 495 PVHLIGNSIGGYFVAIVACLW------PAVVKSVVLINSAGNV 531 (691)
Q Consensus 495 ~v~lvGhS~GG~ial~~A~~~------P~~V~~lVll~~~~~~ 531 (691)
+++|+|-|.||.+|..+|.+. +.++++.|++.|....
T Consensus 167 rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~ 209 (336)
T KOG1515|consen 167 RVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQG 209 (336)
T ss_pred cEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCC
Confidence 899999999999999888652 3579999999997543
No 139
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=98.46 E-value=7.3e-07 Score=86.91 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhC---CcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCC
Q 005554 481 SELLRDFTVEVV---GEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVI 532 (691)
Q Consensus 481 a~dl~~ll~~l~---~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~ 532 (691)
.+...+++.... .++|.|+|.|.||-+|+.+|..+| .|+++|.++|.....
T Consensus 6 fe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~ 59 (213)
T PF08840_consen 6 FEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVF 59 (213)
T ss_dssp HHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEe
Confidence 344444554432 268999999999999999999999 699999999975443
No 140
>PRK04940 hypothetical protein; Provisional
Probab=98.44 E-value=2e-05 Score=72.92 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=52.4
Q ss_pred EEEEcCCCCChHH--HHH-HHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhC----CcCEEEEEeC
Q 005554 430 ILLVHGFGAFLEH--YRD-NIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV----GEPVHLIGNS 502 (691)
Q Consensus 430 VlliHG~~~~~~~--~~~-~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~----~~~v~lvGhS 502 (691)
||++|||.++... .+. ....+ .-+++++ +++ ..+..+..+.+.+.+..+. .+++.|||+|
T Consensus 2 IlYlHGF~SS~~S~~~Ka~~l~~~-~p~~~~~--~l~----------~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSS 68 (180)
T PRK04940 2 IIYLHGFDSTSPGNHEKVLQLQFI-DPDVRLI--SYS----------TLHPKHDMQHLLKEVDKMLQLSDDERPLICGVG 68 (180)
T ss_pred EEEeCCCCCCCCccHHHHHhheee-CCCCeEE--ECC----------CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeC
Confidence 7899999888766 422 11122 1123433 221 1233333444555544311 2579999999
Q ss_pred hhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 503 IGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 503 ~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
+||+.|..+|.++. + ..|++||+..
T Consensus 69 LGGyyA~~La~~~g--~-~aVLiNPAv~ 93 (180)
T PRK04940 69 LGGYWAERIGFLCG--I-RQVIFNPNLF 93 (180)
T ss_pred hHHHHHHHHHHHHC--C-CEEEECCCCC
Confidence 99999999999986 3 5788899754
No 141
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=98.43 E-value=2.3e-07 Score=89.55 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=54.9
Q ss_pred CeEEEEcCCCC-ChHHHHHHHHHHhcCCCE---EEEeCCCCCcCCCCCCcCC----CHHHHHHHHHHHHHHhCCcCEEEE
Q 005554 428 PAILLVHGFGA-FLEHYRDNIYDIADGGNR---VWAITLLGFGRSEKPNIVY----TELMWSELLRDFTVEVVGEPVHLI 499 (691)
Q Consensus 428 p~VlliHG~~~-~~~~~~~~~~~L~~~G~~---Vi~~D~~G~G~S~~~~~~~----s~~~~a~dl~~ll~~l~~~~v~lv 499 (691)
.||||+||.++ ....|..+.+.|.++||. |+++++-....+....... +..++.+.|..+++.-+. ++.||
T Consensus 2 ~PVVlVHG~~~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~TGa-kVDIV 80 (219)
T PF01674_consen 2 RPVVLVHGTGGNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGSPSVQNAHMSCESAKQLRAFIDAVLAYTGA-KVDIV 80 (219)
T ss_dssp --EEEE--TTTTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHHHT---EEEE
T ss_pred CCEEEECCCCcchhhCHHHHHHHHHHcCCCcceeEeccCCCCCCCCcccccccchhhHHHHHHHHHHHHHhhCC-EEEEE
Confidence 58999999988 568899999999999999 8999884333211111111 123555666666677788 99999
Q ss_pred EeChhHHHHHHHHHhC
Q 005554 500 GNSIGGYFVAIVACLW 515 (691)
Q Consensus 500 GhS~GG~ial~~A~~~ 515 (691)
||||||.++..+....
T Consensus 81 gHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 81 GHSMGGTIARYYIKGG 96 (219)
T ss_dssp EETCHHHHHHHHHHHC
T ss_pred EcCCcCHHHHHHHHHc
Confidence 9999999988887543
No 142
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.41 E-value=5.7e-06 Score=77.59 Aligned_cols=174 Identities=19% Similarity=0.168 Sum_probs=108.8
Q ss_pred CCCeEEEEcCCCCChHHHHH----HHHHHhcCCCEEEEeCCCC----CcCCC---------CCC----------------
Q 005554 426 EGPAILLVHGFGAFLEHYRD----NIYDIADGGNRVWAITLLG----FGRSE---------KPN---------------- 472 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~----~~~~L~~~G~~Vi~~D~~G----~G~S~---------~~~---------------- 472 (691)
.++-|||+||+-.+...|.. +-+.|.+. +..+.+|-|- -+.++ .+.
T Consensus 4 ~k~rvLcLHGfrQsg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~~ 82 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEASF 82 (230)
T ss_pred CCceEEEecchhhccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhccccccc
Confidence 36789999999888777653 33444444 6777777552 01111 010
Q ss_pred -cCCCHHHHHHHHHHHHHHhCCcCE-EEEEeChhHHHHHHHHHh---------CccccceEEEecCCCCCCCchhhhhhh
Q 005554 473 -IVYTELMWSELLRDFTVEVVGEPV-HLIGNSIGGYFVAIVACL---------WPAVVKSVVLINSAGNVIPEYSFLQFS 541 (691)
Q Consensus 473 -~~~s~~~~a~dl~~ll~~l~~~~v-~lvGhS~GG~ial~~A~~---------~P~~V~~lVll~~~~~~~~~~~~~~~~ 541 (691)
.....+.-.+.|.+.+...| |+ -|+|.|.|+.++..++.. .| .++-+|++++.....
T Consensus 83 ~~~~~~eesl~yl~~~i~enG--PFDGllGFSQGA~laa~l~~~~~~~~~~~~~P-~~kF~v~~SGf~~~~--------- 150 (230)
T KOG2551|consen 83 TEYFGFEESLEYLEDYIKENG--PFDGLLGFSQGAALAALLAGLGQKGLPYVKQP-PFKFAVFISGFKFPS--------- 150 (230)
T ss_pred ccccChHHHHHHHHHHHHHhC--CCccccccchhHHHHHHhhcccccCCcccCCC-CeEEEEEEecCCCCc---------
Confidence 01123344555555555554 44 589999999999998872 12 267777777642100
Q ss_pred hhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCC
Q 005554 542 NERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFK 621 (691)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 621 (691)
... +.......++
T Consensus 151 ------------------------------------~~~-------------------------------~~~~~~~~i~ 163 (230)
T KOG2551|consen 151 ------------------------------------KKL-------------------------------DESAYKRPLS 163 (230)
T ss_pred ------------------------------------chh-------------------------------hhhhhccCCC
Confidence 000 0001235789
Q ss_pred CcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEeCCCCCCCccChHHHHHHHHHHHHhhh
Q 005554 622 EKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIRELDAGHCPHDEKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 622 ~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~GH~~~~e~pe~v~~~I~~fL~~~~ 682 (691)
+|.|-|.|+.|.+++.+. ...+.+.+++..+....+||++...+ ...+.|.+||+...
T Consensus 164 ~PSLHi~G~~D~iv~~~~-s~~L~~~~~~a~vl~HpggH~VP~~~--~~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 164 TPSLHIFGETDTIVPSER-SEQLAESFKDATVLEHPGGHIVPNKA--KYKEKIADFIQSFL 221 (230)
T ss_pred CCeeEEecccceeecchH-HHHHHHhcCCCeEEecCCCccCCCch--HHHHHHHHHHHHHH
Confidence 999999999999999984 45566777777555559999888766 45566666665544
No 143
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=98.40 E-value=5e-06 Score=80.84 Aligned_cols=94 Identities=22% Similarity=0.230 Sum_probs=71.5
Q ss_pred EEcCCC--CChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHH-HhCCcCEEEEEeChhHHHH
Q 005554 432 LVHGFG--AFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV-EVVGEPVHLIGNSIGGYFV 508 (691)
Q Consensus 432 liHG~~--~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~-~l~~~~v~lvGhS~GG~ia 508 (691)
++|+.+ ++...|..+...|.. ++.|+++|.+|+|.+... ..+++.+++.+...+. .....+++++|||+||.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~a 78 (212)
T smart00824 2 CFPSTAAPSGPHEYARLAAALRG-RRDVSALPLPGFGPGEPL--PASADALVEAQAEAVLRAAGGRPFVLVGHSSGGLLA 78 (212)
T ss_pred ccCCCCCCCcHHHHHHHHHhcCC-CccEEEecCCCCCCCCCC--CCCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHHH
Confidence 455543 677889999999987 499999999999876543 3466777766555443 3445789999999999999
Q ss_pred HHHHHh---CccccceEEEecCC
Q 005554 509 AIVACL---WPAVVKSVVLINSA 528 (691)
Q Consensus 509 l~~A~~---~P~~V~~lVll~~~ 528 (691)
..++.+ .++.+.+++++++.
T Consensus 79 ~~~a~~l~~~~~~~~~l~~~~~~ 101 (212)
T smart00824 79 HAVAARLEARGIPPAAVVLLDTY 101 (212)
T ss_pred HHHHHHHHhCCCCCcEEEEEccC
Confidence 998886 34568999998874
No 144
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.3e-05 Score=92.30 Aligned_cols=226 Identities=13% Similarity=0.043 Sum_probs=142.9
Q ss_pred CCCCceEEEEEEEcCeEEEEEEeCCC-------CCeEEEEcCCCCCh-------HHHHHHHHHHhcCCCEEEEeCCCCCc
Q 005554 401 SNEGVYSTRIWRWNGYQIQYTVAGKE-------GPAILLVHGFGAFL-------EHYRDNIYDIADGGNRVWAITLLGFG 466 (691)
Q Consensus 401 ~~~~~~~~~~~~~~g~~i~y~~~g~~-------~p~VlliHG~~~~~-------~~~~~~~~~L~~~G~~Vi~~D~~G~G 466 (691)
...+......+..+|...++...-++ =|.|+.+||.+++. -.|..+ .+...|+.|+.+|.||-|
T Consensus 493 ~~~p~~~~~~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~--~~s~~g~~v~~vd~RGs~ 570 (755)
T KOG2100|consen 493 VALPIVEFGKIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEV--VVSSRGFAVLQVDGRGSG 570 (755)
T ss_pred ccCCcceeEEEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHH--hhccCCeEEEEEcCCCcC
Confidence 34455666677779999988766542 36788999988632 123222 455679999999999988
Q ss_pred CCCCC--------CcCCCHHHHHHHHHHHHHHhCC--cCEEEEEeChhHHHHHHHHHhCccc-cceEEEecCCCCCCCch
Q 005554 467 RSEKP--------NIVYTELMWSELLRDFTVEVVG--EPVHLIGNSIGGYFVAIVACLWPAV-VKSVVLINSAGNVIPEY 535 (691)
Q Consensus 467 ~S~~~--------~~~~s~~~~a~dl~~ll~~l~~--~~v~lvGhS~GG~ial~~A~~~P~~-V~~lVll~~~~~~~~~~ 535 (691)
..... -+...++|+...+..+++..-+ +++.++|+|.||.+++.++...|+. +++.+.++|..+.. .+
T Consensus 571 ~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~y 649 (755)
T KOG2100|consen 571 GYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YY 649 (755)
T ss_pred CcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-ee
Confidence 76532 1345777777777777766543 6799999999999999999999854 55559999874421 00
Q ss_pred hhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHh
Q 005554 536 SFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNY 615 (691)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (691)
... ...+ +....... ... + .. .....
T Consensus 650 ds~-------------------------~ter----ymg~p~~~-~~~----y-------------~e-------~~~~~ 675 (755)
T KOG2100|consen 650 DST-------------------------YTER----YMGLPSEN-DKG----Y-------------EE-------SSVSS 675 (755)
T ss_pred ccc-------------------------ccHh----hcCCCccc-cch----h-------------hh-------ccccc
Confidence 000 0000 00000000 000 0 00 00111
Q ss_pred hhcCCCCcE-EEEEeCCCCCCChhHHHHHHHHhC---CCcEEEEe-CCCCCCCccC-hHHHHHHHHHHHHhhhC
Q 005554 616 LLEGFKEKV-LIIQGIKDPISDSKSKVAMFKEHC---AGIVIREL-DAGHCPHDEK-PEEVNSIISEWIVTIES 683 (691)
Q Consensus 616 ~l~~i~~Pv-LiI~G~~D~~vp~~~~~~~~~~~~---~~~~~~~~-~~GH~~~~e~-pe~v~~~I~~fL~~~~~ 683 (691)
.+..++.|. |+|||+.|.-++.+...++++.+. -...+.+. +.+|.+..-. -..+...+..|+.....
T Consensus 676 ~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~ 749 (755)
T KOG2100|consen 676 PANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFG 749 (755)
T ss_pred hhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcC
Confidence 244556665 999999999999886666554442 22555555 8999877754 36788888899985543
No 145
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.39 E-value=3.3e-05 Score=79.34 Aligned_cols=101 Identities=26% Similarity=0.226 Sum_probs=60.4
Q ss_pred CCeEEEEcCCCCChHHH------------------HHHHHHHhcCCCEEEEeCCCCCcCCCCCC-----cCCCHHHHHH-
Q 005554 427 GPAILLVHGFGAFLEHY------------------RDNIYDIADGGNRVWAITLLGFGRSEKPN-----IVYTELMWSE- 482 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~------------------~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-----~~~s~~~~a~- 482 (691)
-|+||++||-++..+.. ..+...|+++||-|+++|.+|+|+..... ..++...++.
T Consensus 115 ~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~ 194 (390)
T PF12715_consen 115 FPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDALGFGERGDMEGAAQGSNYDCQALARN 194 (390)
T ss_dssp EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHH
T ss_pred CCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccccccccccccccccccchhHHHHHHH
Confidence 46899999987654331 13567899999999999999999875432 1222222222
Q ss_pred --------------HHHHHHHHhC------CcCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 483 --------------LLRDFTVEVV------GEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 483 --------------dl~~ll~~l~------~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
|....++.+. .++|.++|+||||..++.+|+..+ +|++.|..+..
T Consensus 195 ~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALDd-RIka~v~~~~l 259 (390)
T PF12715_consen 195 LLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALDD-RIKATVANGYL 259 (390)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-T-T--EEEEES-B
T ss_pred HHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcch-hhHhHhhhhhh
Confidence 1122233332 267999999999999999999865 79888877653
No 146
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.39 E-value=4.4e-05 Score=80.37 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=58.9
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhC-----CcCEEEEEeChhHHHHHHHHHhCccccc
Q 005554 446 NIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV-----GEPVHLIGNSIGGYFVAIVACLWPAVVK 520 (691)
Q Consensus 446 ~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~-----~~~v~lvGhS~GG~ial~~A~~~P~~V~ 520 (691)
+-..|.. |+.||.+.+. ..|...-++++.......+++.+. ..+++|||.|.||..++.+|+.+|+.+.
T Consensus 93 vG~AL~~-GHPvYFV~F~-----p~P~pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~g 166 (581)
T PF11339_consen 93 VGVALRA-GHPVYFVGFF-----PEPEPGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVG 166 (581)
T ss_pred HHHHHHc-CCCeEEEEec-----CCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccC
Confidence 4445544 8998888653 234445688887777677766542 2489999999999999999999999888
Q ss_pred eEEEecCCCC
Q 005554 521 SVVLINSAGN 530 (691)
Q Consensus 521 ~lVll~~~~~ 530 (691)
-+|+.+++..
T Consensus 167 plvlaGaPls 176 (581)
T PF11339_consen 167 PLVLAGAPLS 176 (581)
T ss_pred ceeecCCCcc
Confidence 8888777643
No 147
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.39 E-value=4.2e-07 Score=94.10 Aligned_cols=106 Identities=20% Similarity=0.319 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCCCCh--HHH-HHHHHHHhc---CCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHH----hC--C
Q 005554 426 EGPAILLVHGFGAFL--EHY-RDNIYDIAD---GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE----VV--G 493 (691)
Q Consensus 426 ~~p~VlliHG~~~~~--~~~-~~~~~~L~~---~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~----l~--~ 493 (691)
.+|++|++|||.++. ..| ..+...+.+ .+++||++|+...-...............+.|..++.. .+ .
T Consensus 70 ~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~Y~~a~~n~~~vg~~la~~l~~L~~~~g~~~ 149 (331)
T PF00151_consen 70 SKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASNNYPQAVANTRLVGRQLAKFLSFLINNFGVPP 149 (331)
T ss_dssp TSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH---G
T ss_pred CCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccccccchhhhHHHHHHHHHHHHHHHHhhcCCCh
Confidence 478999999998776 344 445665544 47999999995332110000011122333444444433 23 3
Q ss_pred cCEEEEEeChhHHHHHHHHHhCcc--ccceEEEecCCCCC
Q 005554 494 EPVHLIGNSIGGYFVAIVACLWPA--VVKSVVLINSAGNV 531 (691)
Q Consensus 494 ~~v~lvGhS~GG~ial~~A~~~P~--~V~~lVll~~~~~~ 531 (691)
++++|||||+||.+|-.++..... +|.+|+.++|++..
T Consensus 150 ~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~ 189 (331)
T PF00151_consen 150 ENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPL 189 (331)
T ss_dssp GGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-TT
T ss_pred hHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccccc
Confidence 789999999999999999988877 89999999998543
No 148
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.35 E-value=3.1e-06 Score=83.48 Aligned_cols=123 Identities=24% Similarity=0.217 Sum_probs=82.3
Q ss_pred CCceEEEEEEEcCeEEEE---EEeC----CCCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCC
Q 005554 403 EGVYSTRIWRWNGYQIQY---TVAG----KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVY 475 (691)
Q Consensus 403 ~~~~~~~~~~~~g~~i~y---~~~g----~~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~ 475 (691)
..+...+....+|.+|.. ...+ ++...|||+-|..+--+. .++..=++.||.|+.+++||++.|.+.+.+.
T Consensus 212 ~NG~R~kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEv--G~m~tP~~lgYsvLGwNhPGFagSTG~P~p~ 289 (517)
T KOG1553|consen 212 KNGQRLKIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEV--GVMNTPAQLGYSVLGWNHPGFAGSTGLPYPV 289 (517)
T ss_pred CCCeEEEEeecCCcchhheeecCCCCCCCCCceEEEEecCCccceEe--eeecChHHhCceeeccCCCCccccCCCCCcc
Confidence 445555666677766543 2222 124567888886542111 1233333458999999999999998865444
Q ss_pred CHHHHHHHHHHH-HHHhCC--cCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 476 TELMWSELLRDF-TVEVVG--EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 476 s~~~~a~dl~~l-l~~l~~--~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
.....++.+.++ ++.++. +.+++.|+|.||..++.+|..||+ |+++||-.+.
T Consensus 290 n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtF 344 (517)
T KOG1553|consen 290 NTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATF 344 (517)
T ss_pred cchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecch
Confidence 433344444443 566665 679999999999999999999997 9999987664
No 149
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.32 E-value=4.1e-05 Score=79.81 Aligned_cols=102 Identities=18% Similarity=0.100 Sum_probs=70.6
Q ss_pred CCeEEEEcCCC---CChHHH-HHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHH---hC--CcCEE
Q 005554 427 GPAILLVHGFG---AFLEHY-RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE---VV--GEPVH 497 (691)
Q Consensus 427 ~p~VlliHG~~---~~~~~~-~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~---l~--~~~v~ 497 (691)
.|+||++||.+ ++.... ..+...+...|+.|+.+|+|-.-+-. .+..+++..+.+..+.++ ++ .+++.
T Consensus 79 ~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~---~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~ 155 (312)
T COG0657 79 APVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHP---FPAALEDAYAAYRWLRANAAELGIDPSRIA 155 (312)
T ss_pred CcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCC---CCchHHHHHHHHHHHHhhhHhhCCCccceE
Confidence 68999999975 344444 34445555679999999998543332 233556655555555444 33 46799
Q ss_pred EEEeChhHHHHHHHHHhCcc----ccceEEEecCCCCC
Q 005554 498 LIGNSIGGYFVAIVACLWPA----VVKSVVLINSAGNV 531 (691)
Q Consensus 498 lvGhS~GG~ial~~A~~~P~----~V~~lVll~~~~~~ 531 (691)
++|+|.||.+++.++..-.+ ...+.+++.|....
T Consensus 156 v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~ 193 (312)
T COG0657 156 VAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDL 193 (312)
T ss_pred EEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCC
Confidence 99999999999998876443 47889999987443
No 150
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=98.27 E-value=1e-05 Score=82.68 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=46.4
Q ss_pred CCCCcEEEEEeCCCCCCChhHHHHHHHHhC----CCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhhhCCCCCCC
Q 005554 619 GFKEKVLIIQGIKDPISDSKSKVAMFKEHC----AGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTIESKVPAES 689 (691)
Q Consensus 619 ~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~----~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~~~~~~~s 689 (691)
..+.|+++.+|..|.++|.....+..++.+ .+++++.. ..+|....- .-......||+......+..+
T Consensus 217 ~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~~---~~~~~a~~Wl~~rf~G~~~~~ 289 (290)
T PF03583_consen 217 TPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAAF---ASAPDALAWLDDRFAGKPATS 289 (290)
T ss_pred CCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhhh---cCcHHHHHHHHHHHCCCCCCC
Confidence 347899999999999999986666666554 34556655 688976432 122445578887776665543
No 151
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.25 E-value=9.4e-07 Score=89.79 Aligned_cols=91 Identities=21% Similarity=0.177 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCC--cCCCCCCcC---CC---HHHHHHHHHHHHHH--------
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGF--GRSEKPNIV---YT---ELMWSELLRDFTVE-------- 490 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~--G~S~~~~~~---~s---~~~~a~dl~~ll~~-------- 490 (691)
-|.|++-||.|.+...|..+++.|++.||-|.++|.+|- |........ +. +.+-..|+..+++.
T Consensus 71 ~PlvvlshG~Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP 150 (365)
T COG4188 71 LPLVVLSHGSGSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASP 150 (365)
T ss_pred CCeEEecCCCCCCccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCc
Confidence 589999999999999999999999999999999999994 433321111 22 11122233333221
Q ss_pred -----hCCcCEEEEEeChhHHHHHHHHHhCcc
Q 005554 491 -----VVGEPVHLIGNSIGGYFVAIVACLWPA 517 (691)
Q Consensus 491 -----l~~~~v~lvGhS~GG~ial~~A~~~P~ 517 (691)
+...+|.++|||+||..++..+.-..+
T Consensus 151 ~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 151 ALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred ccccccCccceEEEecccccHHHHHhcccccc
Confidence 223689999999999999998865543
No 152
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=98.19 E-value=0.00018 Score=78.30 Aligned_cols=125 Identities=20% Similarity=0.178 Sum_probs=82.2
Q ss_pred EEEEEEEc---CeEEEEEEeCC-----CCCeEEEEcCCCCChHHHHHHHHH----Hh--------c------CCCEEEEe
Q 005554 407 STRIWRWN---GYQIQYTVAGK-----EGPAILLVHGFGAFLEHYRDNIYD----IA--------D------GGNRVWAI 460 (691)
Q Consensus 407 ~~~~~~~~---g~~i~y~~~g~-----~~p~VlliHG~~~~~~~~~~~~~~----L~--------~------~G~~Vi~~ 460 (691)
..-++.++ +..++|.-... ..|.||.+.|.++++..+-.+.+. +. . +-.+++.+
T Consensus 12 ~sGyl~~~~~~~~~lfyw~~~s~~~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~an~l~i 91 (415)
T PF00450_consen 12 YSGYLPVNDNENAHLFYWFFESRNDPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKFANLLFI 91 (415)
T ss_dssp EEEEEEECTTTTEEEEEEEEE-SSGGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGTSEEEEE
T ss_pred EEEEEecCCCCCcEEEEEEEEeCCCCCCccEEEEecCCceeccccccccccCceEEeecccccccccccccccccceEEE
Confidence 34566666 67888876543 278999999999888777433221 11 0 12689999
Q ss_pred CC-CCCcCCCCCCc---CCCHHHHHHHHHHHHHHh-------CCcCEEEEEeChhHHHHHHHHHh----C------cccc
Q 005554 461 TL-LGFGRSEKPNI---VYTELMWSELLRDFTVEV-------VGEPVHLIGNSIGGYFVAIVACL----W------PAVV 519 (691)
Q Consensus 461 D~-~G~G~S~~~~~---~~s~~~~a~dl~~ll~~l-------~~~~v~lvGhS~GG~ial~~A~~----~------P~~V 519 (691)
|. .|.|.|..... ..+.++.++++..+|+.+ ...+++|.|-|+||..+-.+|.. . +-.+
T Consensus 92 D~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inL 171 (415)
T PF00450_consen 92 DQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINL 171 (415)
T ss_dssp --STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEE
T ss_pred eecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccccc
Confidence 94 59999976543 347888888888888654 33589999999999988777753 2 2358
Q ss_pred ceEEEecCCCCC
Q 005554 520 KSVVLINSAGNV 531 (691)
Q Consensus 520 ~~lVll~~~~~~ 531 (691)
+|+++.++...+
T Consensus 172 kGi~IGng~~dp 183 (415)
T PF00450_consen 172 KGIAIGNGWIDP 183 (415)
T ss_dssp EEEEEESE-SBH
T ss_pred ccceecCccccc
Confidence 899999987543
No 153
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=5.6e-05 Score=80.80 Aligned_cols=202 Identities=12% Similarity=0.079 Sum_probs=124.5
Q ss_pred CCeEEEEcCCCCC-----hHHHHH--HHHHHhcCCCEEEEeCCCCCcCCCCC--------CcCCCHHHHHHHHHHHHHHh
Q 005554 427 GPAILLVHGFGAF-----LEHYRD--NIYDIADGGNRVWAITLLGFGRSEKP--------NIVYTELMWSELLRDFTVEV 491 (691)
Q Consensus 427 ~p~VlliHG~~~~-----~~~~~~--~~~~L~~~G~~Vi~~D~~G~G~S~~~--------~~~~s~~~~a~dl~~ll~~l 491 (691)
-|+|+++-|.++- ...+.. -...|+..||-|+.+|-||.-.-... -+...++|+++-+.-+.+..
T Consensus 642 Yptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~ 721 (867)
T KOG2281|consen 642 YPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQT 721 (867)
T ss_pred CceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhc
Confidence 4799999998763 222222 23567888999999999987543321 13557889999999888887
Q ss_pred CC---cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHH
Q 005554 492 VG---EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNF 568 (691)
Q Consensus 492 ~~---~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (691)
|. +++.+-|+|+||++++...+++|+-++..|.=+|.. .|..... ..
T Consensus 722 gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT----~W~~YDT----------------------gY---- 771 (867)
T KOG2281|consen 722 GFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVT----DWRLYDT----------------------GY---- 771 (867)
T ss_pred CcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcce----eeeeecc----------------------cc----
Confidence 54 789999999999999999999999777666544431 1110000 00
Q ss_pred HHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhC
Q 005554 569 VKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHC 648 (691)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~ 648 (691)
-.+++. .+..... .+.. .+... ..+.+..-....|++||--|.-|.......++..+.
T Consensus 772 TERYMg-~P~~nE~---------gY~a------gSV~~------~VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~lv 829 (867)
T KOG2281|consen 772 TERYMG-YPDNNEH---------GYGA------GSVAG------HVEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSALV 829 (867)
T ss_pred hhhhcC-CCccchh---------cccc------hhHHH------HHhhCCCCCceEEEEecccccchhhhhHHHHHHHHH
Confidence 000100 0100000 0000 00000 111233334568999999999998876666655544
Q ss_pred ---CCcEEEEe-CCCCCCCcc-ChHHHHHHHHHHHHh
Q 005554 649 ---AGIVIREL-DAGHCPHDE-KPEEVNSIISEWIVT 680 (691)
Q Consensus 649 ---~~~~~~~~-~~GH~~~~e-~pe~v~~~I~~fL~~ 680 (691)
..-++.+. +--|.+-.- .-.-+-..+..|+++
T Consensus 830 kagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 830 KAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred hCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 44556666 888977654 356666778888875
No 154
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.17 E-value=9.7e-06 Score=80.00 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHh-cCCC--EEEEeCCCCCcCCCC-CCc----CCCHHHHHHHHHHHHHHhCCcCEE
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIA-DGGN--RVWAITLLGFGRSEK-PNI----VYTELMWSELLRDFTVEVVGEPVH 497 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~-~~G~--~Vi~~D~~G~G~S~~-~~~----~~s~~~~a~dl~~ll~~l~~~~v~ 497 (691)
++..+|||||+..+.+.-..-+..+. ..|+ .++.+.||+.|.-.. ... ..+-..+++.|..+.+..+.++++
T Consensus 17 ~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~~I~ 96 (233)
T PF05990_consen 17 DKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIKRIH 96 (233)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCceEE
Confidence 57799999999988655433222222 2223 799999998886321 111 122333333344444444568999
Q ss_pred EEEeChhHHHHHHHHHh----Cc-----cccceEEEecCC
Q 005554 498 LIGNSIGGYFVAIVACL----WP-----AVVKSVVLINSA 528 (691)
Q Consensus 498 lvGhS~GG~ial~~A~~----~P-----~~V~~lVll~~~ 528 (691)
|++||||+.+.+.+... .+ .++..+|+++|-
T Consensus 97 ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApD 136 (233)
T PF05990_consen 97 ILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPD 136 (233)
T ss_pred EEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCC
Confidence 99999999999987643 21 368899999875
No 155
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.15 E-value=1.5e-05 Score=78.04 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=70.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCC------C-Cc----------------C-C--CHHH
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEK------P-NI----------------V-Y--TELM 479 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~------~-~~----------------~-~--s~~~ 479 (691)
+=|.|||-||+|++...|..+.-.|+.+||-|.+++.|-+-.+-. + .+ . + ..++
T Consensus 117 k~PvvvFSHGLggsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~irNeq 196 (399)
T KOG3847|consen 117 KYPVVVFSHGLGGSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHIRNEQ 196 (399)
T ss_pred CccEEEEecccccchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEeeCHH
Confidence 358999999999999999999999999999999999986643310 0 00 0 0 1111
Q ss_pred H---HHHHH---HHHHHh------------------------CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 480 W---SELLR---DFTVEV------------------------VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 480 ~---a~dl~---~ll~~l------------------------~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
. ++.+. .+++.+ .-.++.++|||+||..++...+.+. .+++.|+++..
T Consensus 197 v~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t-~FrcaI~lD~W 274 (399)
T KOG3847|consen 197 VGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHT-DFRCAIALDAW 274 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccc-ceeeeeeeeee
Confidence 1 11111 112211 1146899999999999988887765 48888888875
No 156
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.07 E-value=5.5e-05 Score=70.67 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=70.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCC--------C----------CCcCCCHHHHHHHHHHHHH
Q 005554 428 PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE--------K----------PNIVYTELMWSELLRDFTV 489 (691)
Q Consensus 428 p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~--------~----------~~~~~s~~~~a~dl~~ll~ 489 (691)
.+||++||.+.+...|..+++.|.-.+...|++.-|-.-.+. . +...-.+...++.+..+++
T Consensus 4 atIi~LHglGDsg~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~Li~ 83 (206)
T KOG2112|consen 4 ATIIFLHGLGDSGSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANLID 83 (206)
T ss_pred EEEEEEecCCCCCccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHHHH
Confidence 489999999999999988888877667778887543221110 0 0111233445556666665
Q ss_pred Hh---CC--cCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 490 EV---VG--EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 490 ~l---~~--~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
+. ++ .++.+-|.||||.+++..+..+|..+.+++-.++.
T Consensus 84 ~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~ 127 (206)
T KOG2112|consen 84 NEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGF 127 (206)
T ss_pred HHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccc
Confidence 43 22 56889999999999999999998888888777653
No 157
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.07 E-value=9.5e-05 Score=74.24 Aligned_cols=103 Identities=19% Similarity=0.141 Sum_probs=72.3
Q ss_pred EEEEcCeEEEEEEeC----CCCCeEEEEcCCCCChHHH-------HHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHH
Q 005554 410 IWRWNGYQIQYTVAG----KEGPAILLVHGFGAFLEHY-------RDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTEL 478 (691)
Q Consensus 410 ~~~~~g~~i~y~~~g----~~~p~VlliHG~~~~~~~~-------~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~ 478 (691)
.+..|++.|--..-. .++..||++-|.++.-+.. ..+.+...+.|-+|+.+++||.|.|.++. +.+
T Consensus 116 ~Iq~D~~~IDt~~I~~~~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~---s~~ 192 (365)
T PF05677_consen 116 PIQYDGVKIDTMAIHQPEAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPP---SRK 192 (365)
T ss_pred EEeeCCEEEEEEEeeCCCCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCC---CHH
Confidence 344466666543332 2366999999988765541 11222233347899999999999998765 468
Q ss_pred HHHHHHHHHHHHhC-------CcCEEEEEeChhHHHHHHHHHhC
Q 005554 479 MWSELLRDFTVEVV-------GEPVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 479 ~~a~dl~~ll~~l~-------~~~v~lvGhS~GG~ial~~A~~~ 515 (691)
+++.+-.+.++.+. .+++++.|||+||.++..++.++
T Consensus 193 dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 193 DLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred HHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 88887777776663 26799999999999998866654
No 158
>PLN02606 palmitoyl-protein thioesterase
Probab=98.05 E-value=0.00031 Score=70.26 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=67.1
Q ss_pred CCeEEEEcCCC--CChHHHHHHHHHHhcC-CCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCC--cCEEEEEe
Q 005554 427 GPAILLVHGFG--AFLEHYRDNIYDIADG-GNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG--EPVHLIGN 501 (691)
Q Consensus 427 ~p~VlliHG~~--~~~~~~~~~~~~L~~~-G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~--~~v~lvGh 501 (691)
..|||+.||+| ++...+..+.+.+.+. |+.+.++. .|-|.. ..--..+.++++.+.+-+..... +-+++||+
T Consensus 26 ~~PvViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~~~~--~s~~~~~~~Qv~~vce~l~~~~~L~~G~naIGf 102 (306)
T PLN02606 26 SVPFVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGNGVQ--DSLFMPLRQQASIACEKIKQMKELSEGYNIVAE 102 (306)
T ss_pred CCCEEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECCCcc--cccccCHHHHHHHHHHHHhcchhhcCceEEEEE
Confidence 56999999999 5566777777777533 66555554 232211 11112444555555444433211 45999999
Q ss_pred ChhHHHHHHHHHhCcc--ccceEEEecCCCC
Q 005554 502 SIGGYFVAIVACLWPA--VVKSVVLINSAGN 530 (691)
Q Consensus 502 S~GG~ial~~A~~~P~--~V~~lVll~~~~~ 530 (691)
|.||.++-.++.+.|+ .|+.+|.++++-.
T Consensus 103 SQGglflRa~ierc~~~p~V~nlISlggph~ 133 (306)
T PLN02606 103 SQGNLVARGLIEFCDNAPPVINYVSLGGPHA 133 (306)
T ss_pred cchhHHHHHHHHHCCCCCCcceEEEecCCcC
Confidence 9999999999999877 4999999998643
No 159
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.01 E-value=1.5e-05 Score=83.22 Aligned_cols=102 Identities=24% Similarity=0.252 Sum_probs=83.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCE---EEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeCh
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNR---VWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSI 503 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~---Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~ 503 (691)
.-+++++||++.+...|..+...+...|+. ++.+++++. +.........+++...+.+++...+.+++.++||||
T Consensus 59 ~~pivlVhG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~ql~~~V~~~l~~~ga~~v~LigHS~ 136 (336)
T COG1075 59 KEPIVLVHGLGGGYGNFLPLDYRLAILGWLTNGVYAFELSGG--DGTYSLAVRGEQLFAYVDEVLAKTGAKKVNLIGHSM 136 (336)
T ss_pred CceEEEEccCcCCcchhhhhhhhhcchHHHhccccccccccc--CCCccccccHHHHHHHHHHHHhhcCCCceEEEeecc
Confidence 459999999988888888888888877777 888888866 222223456677788888888888889999999999
Q ss_pred hHHHHHHHHHhCc--cccceEEEecCCCC
Q 005554 504 GGYFVAIVACLWP--AVVKSVVLINSAGN 530 (691)
Q Consensus 504 GG~ial~~A~~~P--~~V~~lVll~~~~~ 530 (691)
||.+...++...+ .+|+.++.++++-.
T Consensus 137 GG~~~ry~~~~~~~~~~V~~~~tl~tp~~ 165 (336)
T COG1075 137 GGLDSRYYLGVLGGANRVASVVTLGTPHH 165 (336)
T ss_pred cchhhHHHHhhcCccceEEEEEEeccCCC
Confidence 9999999998888 78999999998733
No 160
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.99 E-value=6e-05 Score=74.02 Aligned_cols=125 Identities=21% Similarity=0.187 Sum_probs=88.9
Q ss_pred ceEEEEEEEcCeEEEEEEeCCC-----CCeEEEEcCCCCChHHHHHHH--HHHhc-CCCEEEEeCC-------CCCcCCC
Q 005554 405 VYSTRIWRWNGYQIQYTVAGKE-----GPAILLVHGFGAFLEHYRDNI--YDIAD-GGNRVWAITL-------LGFGRSE 469 (691)
Q Consensus 405 ~~~~~~~~~~g~~i~y~~~g~~-----~p~VlliHG~~~~~~~~~~~~--~~L~~-~G~~Vi~~D~-------~G~G~S~ 469 (691)
..+...+..+|.+..|..+-+. .|.||++||.+++...+.... +.|++ .||-|+.+|- .++|.+.
T Consensus 34 ~~~~~s~~~~g~~r~y~l~vP~g~~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~ 113 (312)
T COG3509 34 GSSVASFDVNGLKRSYRLYVPPGLPSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWF 113 (312)
T ss_pred cCCccccccCCCccceEEEcCCCCCCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCccccccCCCcccccC
Confidence 4445566777877777766432 568999999999887776654 55554 4899999962 1223332
Q ss_pred CCC----cCCCHHHHHHHHHHHHHHhCCc--CEEEEEeChhHHHHHHHHHhCccccceEEEecCCC
Q 005554 470 KPN----IVYTELMWSELLRDFTVEVVGE--PVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529 (691)
Q Consensus 470 ~~~----~~~s~~~~a~dl~~ll~~l~~~--~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~ 529 (691)
.+. .--....+.+.+..++.+.+++ +|++.|.|-||.++..+++.+|+.+.++-.+++..
T Consensus 114 ~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 114 GPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 222 1223445566666677777775 79999999999999999999999999998888753
No 161
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=97.92 E-value=0.00033 Score=67.02 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=56.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCE-EEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhH
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNR-VWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGG 505 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~-Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG 505 (691)
+..|||..|||.+...+.++.. ..++. ++++|++..-.. . + + .+.+.+.|||+|||-
T Consensus 11 ~~LilfF~GWg~d~~~f~hL~~---~~~~D~l~~yDYr~l~~d------~-------~----~--~~y~~i~lvAWSmGV 68 (213)
T PF04301_consen 11 KELILFFAGWGMDPSPFSHLIL---PENYDVLICYDYRDLDFD------F-------D----L--SGYREIYLVAWSMGV 68 (213)
T ss_pred CeEEEEEecCCCChHHhhhccC---CCCccEEEEecCcccccc------c-------c----c--ccCceEEEEEEeHHH
Confidence 5689999999999887765531 22455 466788743211 0 1 1 134789999999999
Q ss_pred HHHHHHHHhCccccceEEEecCCCCCC
Q 005554 506 YFVAIVACLWPAVVKSVVLINSAGNVI 532 (691)
Q Consensus 506 ~ial~~A~~~P~~V~~lVll~~~~~~~ 532 (691)
.+|..+....| ++..|.+++.+.+.
T Consensus 69 w~A~~~l~~~~--~~~aiAINGT~~Pi 93 (213)
T PF04301_consen 69 WAANRVLQGIP--FKRAIAINGTPYPI 93 (213)
T ss_pred HHHHHHhccCC--cceeEEEECCCCCc
Confidence 99988765543 77888888876544
No 162
>COG4099 Predicted peptidase [General function prediction only]
Probab=97.89 E-value=7.5e-05 Score=72.75 Aligned_cols=114 Identities=19% Similarity=0.182 Sum_probs=68.2
Q ss_pred cCeEEEEEEeCCC-------C-CeEEEEcCCCCChHHH-HHHHH-------HHhcCCCEEEEeCCC-CCcCCCCCCcCCC
Q 005554 414 NGYQIQYTVAGKE-------G-PAILLVHGFGAFLEHY-RDNIY-------DIADGGNRVWAITLL-GFGRSEKPNIVYT 476 (691)
Q Consensus 414 ~g~~i~y~~~g~~-------~-p~VlliHG~~~~~~~~-~~~~~-------~L~~~G~~Vi~~D~~-G~G~S~~~~~~~s 476 (691)
.|.+|-|.-+-++ - |.|||+||.|.....- ..+.. ..-+.++-|+++.+- =+..++... ...
T Consensus 170 tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~if~d~e~~t-~~~ 248 (387)
T COG4099 170 TGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFADSEEKT-LLY 248 (387)
T ss_pred cCceeeEEEecccccCCCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEccccccccccccccc-chh
Confidence 4677888766542 2 7899999987654432 22211 111122334444311 111122111 112
Q ss_pred HHHHHHHHHHH-HHHhCC--cCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 477 ELMWSELLRDF-TVEVVG--EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 477 ~~~~a~dl~~l-l~~l~~--~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
.....+.+.++ .++.++ .+++++|.|+||+-++.++.++|+.+++.+++++.
T Consensus 249 l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~ 303 (387)
T COG4099 249 LIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGG 303 (387)
T ss_pred HHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCC
Confidence 23334444433 345555 57999999999999999999999999999999985
No 163
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.89 E-value=0.002 Score=64.27 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=112.7
Q ss_pred eEEEEcCCCCC-hHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCc---CEEEEEeChh
Q 005554 429 AILLVHGFGAF-LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGE---PVHLIGNSIG 504 (691)
Q Consensus 429 ~VlliHG~~~~-~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~---~v~lvGhS~G 504 (691)
|||++=||.+. .....+..+...+.|++++.+-.+-....... -.+...++.+.+.+...... ++++-..|.|
T Consensus 1 plvvl~gW~gA~~~hl~KY~~~Y~~~g~~il~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~il~H~FSnG 77 (240)
T PF05705_consen 1 PLVVLLGWMGAKPKHLAKYSDLYQDPGFDILLVTSPPADFFWPS---KRLAPAADKLLELLSDSQSASPPPILFHSFSNG 77 (240)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEeCCHHHHeeec---cchHHHHHHHHHHhhhhccCCCCCEEEEEEECc
Confidence 46777787654 44444555555557999999865432221111 24445555566665554433 7889999998
Q ss_pred HHHHHHHHHh-----C-----ccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhh--hhHHHHHHHHhhHHHHHHhh
Q 005554 505 GYFVAIVACL-----W-----PAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRL--GAQLLLFYLRLNISNFVKQC 572 (691)
Q Consensus 505 G~ial~~A~~-----~-----P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 572 (691)
|...+..... . -.+++++|+-++++....................... ................. .
T Consensus 78 G~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 155 (240)
T PF05705_consen 78 GSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTYSSSARAFSAALPKSSPRWFVPLWPLLQFLLRLSIISYF--I 155 (240)
T ss_pred hHHHHHHHHHHHHhcccccccccccceeEEeCCCCccccccHHHHHHHHcCccchhhHHHHHHHHHHHHHHHHHHHH--H
Confidence 8877765431 1 1248999988777544331111111100000000000 00000000000000000 0
Q ss_pred cCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhC---C
Q 005554 573 YPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHC---A 649 (691)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~---~ 649 (691)
. ............... .......+|-|++++..|.+++.+...+..++.. -
T Consensus 156 ~-------------------~~~~~~~~~~~~~~~-------~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~ 209 (240)
T PF05705_consen 156 F-------------------GYPDVQEYYRRALND-------FANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGW 209 (240)
T ss_pred h-------------------cCCcHHHHHHHHHhh-------hhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCC
Confidence 0 000001111111100 0123456899999999999999987666554433 2
Q ss_pred CcEEEEe-CCCCCCCcc-ChHHHHHHHHHHH
Q 005554 650 GIVIREL-DAGHCPHDE-KPEEVNSIISEWI 678 (691)
Q Consensus 650 ~~~~~~~-~~GH~~~~e-~pe~v~~~I~~fL 678 (691)
.+..... ++.|..|+. +|++..+.+.+|+
T Consensus 210 ~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 210 DVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred eEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 3444444 899988886 4999999999884
No 164
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=97.88 E-value=3.6e-05 Score=75.33 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=49.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcC--CCEEEEeCCCCCcCCCCCCcCCCHHHHH----HHHHHHHHHhCC--cCEEE
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADG--GNRVWAITLLGFGRSEKPNIVYTELMWS----ELLRDFTVEVVG--EPVHL 498 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~--G~~Vi~~D~~G~G~S~~~~~~~s~~~~a----~dl~~ll~~l~~--~~v~l 498 (691)
...|||+||+.++...|..+...+... .+.--.+...++..... ....+++..+ +.|.+.++.... .++++
T Consensus 4 ~hLvV~vHGL~G~~~d~~~~~~~l~~~~~~~~~~~i~~~~~~~n~~-~T~~gI~~~g~rL~~eI~~~~~~~~~~~~~Isf 82 (217)
T PF05057_consen 4 VHLVVFVHGLWGNPADMRYLKNHLEKIPEDLPNARIVVLGYSNNEF-KTFDGIDVCGERLAEEILEHIKDYESKIRKISF 82 (217)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhhhhcchhhhhhhccccccc-ccchhhHHHHHHHHHHHHHhccccccccccceE
Confidence 457999999999999998777776651 12111112222211111 1122344444 444444444343 47999
Q ss_pred EEeChhHHHHHHHHH
Q 005554 499 IGNSIGGYFVAIVAC 513 (691)
Q Consensus 499 vGhS~GG~ial~~A~ 513 (691)
|||||||.++-.+..
T Consensus 83 IgHSLGGli~r~al~ 97 (217)
T PF05057_consen 83 IGHSLGGLIARYALG 97 (217)
T ss_pred EEecccHHHHHHHHH
Confidence 999999999876554
No 165
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=97.87 E-value=0.00067 Score=72.86 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=63.5
Q ss_pred CCeEEEEcCCCCC-hHHHHHHHHHHhcCC----CEEEEeCCCCC-cCCCC-CCcCCCHHHHHHHHHHHHHHh-C----Cc
Q 005554 427 GPAILLVHGFGAF-LEHYRDNIYDIADGG----NRVWAITLLGF-GRSEK-PNIVYTELMWSELLRDFTVEV-V----GE 494 (691)
Q Consensus 427 ~p~VlliHG~~~~-~~~~~~~~~~L~~~G----~~Vi~~D~~G~-G~S~~-~~~~~s~~~~a~dl~~ll~~l-~----~~ 494 (691)
-|.|+++||..-. .......+..|.+.| .-|+.+|-.+. .++.. +...--.+.++++|.-+++.. . .+
T Consensus 209 ~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP~I~~~y~~~~d~~ 288 (411)
T PRK10439 209 RPLAILLDGQFWAESMPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQELPCNADFWLAVQQELLPQVRAIAPFSDDAD 288 (411)
T ss_pred CCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCceEEEEECCCCcccccccCCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 5789999994311 111223455555555 34677775321 11111 111111333456666666553 2 25
Q ss_pred CEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 495 PVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 495 ~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
+.+|+|+||||..|+.++.++|+.+.+++.+++.
T Consensus 289 ~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs 322 (411)
T PRK10439 289 RTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGS 322 (411)
T ss_pred ceEEEEEChHHHHHHHHHHhCcccccEEEEeccc
Confidence 6899999999999999999999999999999985
No 166
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.85 E-value=0.00042 Score=64.73 Aligned_cols=101 Identities=11% Similarity=-0.018 Sum_probs=75.9
Q ss_pred CCeEEEEcCCCCC---hHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCC----cCEEEE
Q 005554 427 GPAILLVHGFGAF---LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG----EPVHLI 499 (691)
Q Consensus 427 ~p~VlliHG~~~~---~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~----~~v~lv 499 (691)
+..||||-|++.. ...-..+...|.+.+|.++-+.++.+- ..-+..++.+-++|+..++++++. ..++|+
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy---~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~ 112 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSY---NGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLV 112 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccc---cccccccccccHHHHHHHHHHhhccCcccceEEE
Confidence 5679999998875 233456788888889999998765321 112345777788999999998865 479999
Q ss_pred EeChhHHHHHHHHHh--CccccceEEEecCCCC
Q 005554 500 GNSIGGYFVAIVACL--WPAVVKSVVLINSAGN 530 (691)
Q Consensus 500 GhS~GG~ial~~A~~--~P~~V~~lVll~~~~~ 530 (691)
|||.|+.-.+.|... .|..|.+.|+..|...
T Consensus 113 GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSD 145 (299)
T KOG4840|consen 113 GHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSD 145 (299)
T ss_pred ecCccchHHHHHHHhccchHHHHHHHHhCccch
Confidence 999999998888733 3567888888888754
No 167
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.00032 Score=67.19 Aligned_cols=231 Identities=14% Similarity=0.113 Sum_probs=122.5
Q ss_pred CCeEEEEcCCCCChHHHH-HHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHH--------HHHHHH------Hh
Q 005554 427 GPAILLVHGFGAFLEHYR-DNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSEL--------LRDFTV------EV 491 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~-~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~d--------l~~ll~------~l 491 (691)
++.-|++-|.|.+...-+ .+...+.++|...+.+.-|-+|+...+..-.+.-+.+.| |.+... ..
T Consensus 113 ~~KOG~~a~tgdh~y~rr~~L~~p~~k~~i~tmvle~pfYgqr~p~~q~~~~Le~vtDlf~mG~A~I~E~~~lf~Ws~~~ 192 (371)
T KOG1551|consen 113 ADLCLSWALTGDHVYTRRLVLSKPINKREIATMVLEKPFYGQRVPEEQIIHMLEYVTDLFKMGRATIQEFVKLFTWSSAD 192 (371)
T ss_pred CCeeEEEeecCCceeEeeeeecCchhhhcchheeeecccccccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence 455555656665543322 355667777889999999999987654321111111222 222222 33
Q ss_pred CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHh
Q 005554 492 VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQ 571 (691)
Q Consensus 492 ~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (691)
|..++.++|-||||.+|......++.-|+-+=++++..... .+. .. .+... . .....+...
T Consensus 193 g~g~~~~~g~Smgg~~a~~vgS~~q~Pva~~p~l~~~~asv-s~t-----eg----~l~~~-~--------s~~~~~~~~ 253 (371)
T KOG1551|consen 193 GLGNLNLVGRSMGGDIANQVGSLHQKPVATAPCLNSSKASV-SAT-----EG----LLLQD-T--------SKMKRFNQT 253 (371)
T ss_pred CcccceeeeeecccHHHHhhcccCCCCccccccccccccch-hhh-----hh----hhhhh-h--------HHHHhhccC
Confidence 55899999999999999999998877666555555431110 000 00 00000 0 000000000
Q ss_pred -hcCCCCcccc-HHHHHHH--HHhcCCcchHHHHHHHhccccCcchHhhhcCCCC-----cEEEEEeCCCCCCChhHHHH
Q 005554 572 -CYPTRRERAD-DWLISEM--LRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKE-----KVLIIQGIKDPISDSKSKVA 642 (691)
Q Consensus 572 -~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~-----PvLiI~G~~D~~vp~~~~~~ 642 (691)
.+.....+.. +.+.... .....+......++..++... .+....+ -+.++.+++|..+|.. ...
T Consensus 254 t~~~~~~~r~p~Q~~~~~~~~~srn~~~E~~~~Mr~vmd~~T------~v~~fp~Pvdpsl~ivv~A~~D~Yipr~-gv~ 326 (371)
T KOG1551|consen 254 TNKSGYTSRNPAQSYHLLSKEQSRNSRKESLIFMRGVMDECT------HVANFPVPVDPSLIIVVQAKEDAYIPRT-GVR 326 (371)
T ss_pred cchhhhhhhCchhhHHHHHHHhhhcchHHHHHHHHHHHHhhc------hhhcCCCCCCCCeEEEEEecCCcccccc-CcH
Confidence 0000000111 0000000 000001111112222221110 1222233 3678889999999985 567
Q ss_pred HHHHhCCCcEEEEeCCCCC-CCccChHHHHHHHHHHHHhhhC
Q 005554 643 MFKEHCAGIVIRELDAGHC-PHDEKPEEVNSIISEWIVTIES 683 (691)
Q Consensus 643 ~~~~~~~~~~~~~~~~GH~-~~~e~pe~v~~~I~~fL~~~~~ 683 (691)
.+++.-|++++..+.+||. ..+-+-+.+...|.+-|++...
T Consensus 327 ~lQ~~WPg~eVr~~egGHVsayl~k~dlfRR~I~d~L~R~~k 368 (371)
T KOG1551|consen 327 SLQEIWPGCEVRYLEGGHVSAYLFKQDLFRRAIVDGLDRLDK 368 (371)
T ss_pred HHHHhCCCCEEEEeecCceeeeehhchHHHHHHHHHHHhhhh
Confidence 7889999999999999995 4556788999999999988663
No 168
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=97.81 E-value=0.00014 Score=78.81 Aligned_cols=118 Identities=15% Similarity=0.058 Sum_probs=83.5
Q ss_pred EcCeEEEEEEeCCC----CCeEEEEc--CCCCC---hHHHHHHHH---HHhcCCCEEEEeCCCCCcCCCCCCcCCCHHH-
Q 005554 413 WNGYQIQYTVAGKE----GPAILLVH--GFGAF---LEHYRDNIY---DIADGGNRVWAITLLGFGRSEKPNIVYTELM- 479 (691)
Q Consensus 413 ~~g~~i~y~~~g~~----~p~VlliH--G~~~~---~~~~~~~~~---~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~- 479 (691)
-||++|+...+-+. .|+++..+ -+.-. ...-..... .++.+||.||..|.||.|.|++....+.-++
T Consensus 27 RDGvrL~~dIy~Pa~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~~~~~~E~ 106 (563)
T COG2936 27 RDGVRLAADIYRPAGAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFDPESSREA 106 (563)
T ss_pred cCCeEEEEEEEccCCCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccceeccccc
Confidence 38999987776543 57777777 22211 111112333 5778899999999999999998654332222
Q ss_pred -HHHHHHHHHHHhCC--cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 480 -WSELLRDFTVEVVG--EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 480 -~a~dl~~ll~~l~~--~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
-..|+.+++..... .++..+|.|++|...+.+|+..|..+++++...+...
T Consensus 107 ~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D 160 (563)
T COG2936 107 EDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVD 160 (563)
T ss_pred cchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchheeecccccccc
Confidence 23366667666544 6899999999999999999998888999988887644
No 169
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.78 E-value=0.00017 Score=76.67 Aligned_cols=159 Identities=17% Similarity=0.098 Sum_probs=99.4
Q ss_pred CCeEEEEcCCC---CChHHHHHHHHHHhcCC--CEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHH--------HhCC
Q 005554 427 GPAILLVHGFG---AFLEHYRDNIYDIADGG--NRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTV--------EVVG 493 (691)
Q Consensus 427 ~p~VlliHG~~---~~~~~~~~~~~~L~~~G--~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~--------~l~~ 493 (691)
.|.+|++||.+ .+++.+...-..|...| ..|.++|++.- .++.++...++.+..+.. ++..
T Consensus 176 spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~------igG~nI~h~ae~~vSf~r~kvlei~gefph 249 (784)
T KOG3253|consen 176 SPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNP------IGGANIKHAAEYSVSFDRYKVLEITGEFPH 249 (784)
T ss_pred CceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCC------CCCcchHHHHHHHHHHhhhhhhhhhccCCC
Confidence 67899999987 12222222223333222 55677777532 112445555555554443 2334
Q ss_pred cCEEEEEeChhHHHHHHHHHhCc-cccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhh
Q 005554 494 EPVHLIGNSIGGYFVAIVACLWP-AVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQC 572 (691)
Q Consensus 494 ~~v~lvGhS~GG~ial~~A~~~P-~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (691)
.+++|+|.|||+.++...+...- ..|+++|+++-+......
T Consensus 250 a~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdg-------------------------------------- 291 (784)
T KOG3253|consen 250 APIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDG-------------------------------------- 291 (784)
T ss_pred CceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCc--------------------------------------
Confidence 78999999999888887766543 248888888754221100
Q ss_pred cCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCcE
Q 005554 573 YPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGIV 652 (691)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~ 652 (691)
+... ..+.+-.++.|+|||.|.+|..+++..+.+.-.++....+
T Consensus 292 ----prgi--------------------------------rDE~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA~~e 335 (784)
T KOG3253|consen 292 ----PRGI--------------------------------RDEALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQAEVE 335 (784)
T ss_pred ----ccCC--------------------------------cchhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhccce
Confidence 0000 0112345689999999999999999877776667777778
Q ss_pred EEEe-CCCCCCCcc
Q 005554 653 IREL-DAGHCPHDE 665 (691)
Q Consensus 653 ~~~~-~~GH~~~~e 665 (691)
++++ +++|.+-.-
T Consensus 336 lhVI~~adhsmaip 349 (784)
T KOG3253|consen 336 LHVIGGADHSMAIP 349 (784)
T ss_pred EEEecCCCccccCC
Confidence 8888 899976653
No 170
>PLN02633 palmitoyl protein thioesterase family protein
Probab=97.56 E-value=0.0057 Score=61.42 Aligned_cols=101 Identities=10% Similarity=0.163 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCCChH--HHHHHHHHHhc-CCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCC--cCEEEEEe
Q 005554 427 GPAILLVHGFGAFLE--HYRDNIYDIAD-GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG--EPVHLIGN 501 (691)
Q Consensus 427 ~p~VlliHG~~~~~~--~~~~~~~~L~~-~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~--~~v~lvGh 501 (691)
..|||+.||+|.+.. ....+.+.+.+ .|..++++.. |.+....--..+.++++.+.+-+..... +-+++||+
T Consensus 25 ~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i---g~~~~~s~~~~~~~Qve~vce~l~~~~~l~~G~naIGf 101 (314)
T PLN02633 25 SVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI---GNGVGDSWLMPLTQQAEIACEKVKQMKELSQGYNIVGR 101 (314)
T ss_pred CCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE---CCCccccceeCHHHHHHHHHHHHhhchhhhCcEEEEEE
Confidence 458999999987643 44455555533 2666766654 3332222223455555555554443211 45999999
Q ss_pred ChhHHHHHHHHHhCcc--ccceEEEecCCCC
Q 005554 502 SIGGYFVAIVACLWPA--VVKSVVLINSAGN 530 (691)
Q Consensus 502 S~GG~ial~~A~~~P~--~V~~lVll~~~~~ 530 (691)
|.||.++-.++.+.|+ .|+.+|.++++-.
T Consensus 102 SQGGlflRa~ierc~~~p~V~nlISlggph~ 132 (314)
T PLN02633 102 SQGNLVARGLIEFCDGGPPVYNYISLAGPHA 132 (314)
T ss_pred ccchHHHHHHHHHCCCCCCcceEEEecCCCC
Confidence 9999999999999887 5999999998643
No 171
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=97.55 E-value=0.00043 Score=69.62 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=63.0
Q ss_pred CCeEEEEcCCCCChHHH--HHHHHHHhcCC----CEEEEeCCCCCcCCC-----------CCCcCC---C-HHHHHHHHH
Q 005554 427 GPAILLVHGFGAFLEHY--RDNIYDIADGG----NRVWAITLLGFGRSE-----------KPNIVY---T-ELMWSELLR 485 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~--~~~~~~L~~~G----~~Vi~~D~~G~G~S~-----------~~~~~~---s-~~~~a~dl~ 485 (691)
-|+|+++||.......+ ...+..+...| .-||+++..+.+... .....- . .+.+.++|.
T Consensus 24 ~PvlylldG~~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~ 103 (251)
T PF00756_consen 24 YPVLYLLDGQSGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSRRADDSGGGDAYETFLTEELI 103 (251)
T ss_dssp EEEEEEESHTTHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHTHHH
T ss_pred CEEEEEccCCccccccchHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccccccccCCCCcccceehhccch
Confidence 46899999973222222 22333333332 345666655544110 001111 1 233455666
Q ss_pred HHHHHh-CC--cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCC
Q 005554 486 DFTVEV-VG--EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529 (691)
Q Consensus 486 ~ll~~l-~~--~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~ 529 (691)
.+++.. .. ++..|+|+||||..|+.++.+||+.+.+++.++|..
T Consensus 104 p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~ 150 (251)
T PF00756_consen 104 PYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGAL 150 (251)
T ss_dssp HHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEES
T ss_pred hHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccc
Confidence 666543 33 237999999999999999999999999999999863
No 172
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=97.54 E-value=0.012 Score=63.50 Aligned_cols=122 Identities=15% Similarity=0.107 Sum_probs=74.0
Q ss_pred EEEEEEc---CeEEEEEEeCC-----CCCeEEEEcCCCCChHHHHHHH---H-------------HHhc------CCCEE
Q 005554 408 TRIWRWN---GYQIQYTVAGK-----EGPAILLVHGFGAFLEHYRDNI---Y-------------DIAD------GGNRV 457 (691)
Q Consensus 408 ~~~~~~~---g~~i~y~~~g~-----~~p~VlliHG~~~~~~~~~~~~---~-------------~L~~------~G~~V 457 (691)
.-++.++ +..++|.-... +.|.||.+.|.++++..+--+. + .|.. +-.++
T Consensus 39 sGy~~v~~~~~~~lfy~f~es~~~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anl 118 (433)
T PLN03016 39 TGYIGIGEDENVQFFYYFIKSENNPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANI 118 (433)
T ss_pred EEEEEecCCCCeEEEEEEEecCCCcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCcE
Confidence 4466664 46677765432 2689999999988766432111 1 1111 12579
Q ss_pred EEeC-CCCCcCCCCCCc-CC-CHHHHHHHHHHHHHH----h---CCcCEEEEEeChhHHHHHHHHHhC----------cc
Q 005554 458 WAIT-LLGFGRSEKPNI-VY-TELMWSELLRDFTVE----V---VGEPVHLIGNSIGGYFVAIVACLW----------PA 517 (691)
Q Consensus 458 i~~D-~~G~G~S~~~~~-~~-s~~~~a~dl~~ll~~----l---~~~~v~lvGhS~GG~ial~~A~~~----------P~ 517 (691)
+.+| ..|.|.|..... .. +-.+.++++..++.. . ...+++|+|.|+||..+-.+|..- +-
T Consensus 119 lfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~i 198 (433)
T PLN03016 119 IFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPI 198 (433)
T ss_pred EEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcc
Confidence 9999 669999864321 11 111223444444433 2 336899999999999887776531 12
Q ss_pred ccceEEEecCCC
Q 005554 518 VVKSVVLINSAG 529 (691)
Q Consensus 518 ~V~~lVll~~~~ 529 (691)
.++|+++-+|..
T Consensus 199 nLkGi~iGNg~t 210 (433)
T PLN03016 199 NLQGYMLGNPVT 210 (433)
T ss_pred cceeeEecCCCc
Confidence 578999888753
No 173
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.00054 Score=69.42 Aligned_cols=104 Identities=19% Similarity=0.290 Sum_probs=71.0
Q ss_pred CCCeEEEEcCCCCChHH-HHHHHHHHhcCC--CEEEEeCCCCCcCC-----CCCCcCCCHHHHHHHHHHHHHHhCCcCEE
Q 005554 426 EGPAILLVHGFGAFLEH-YRDNIYDIADGG--NRVWAITLLGFGRS-----EKPNIVYTELMWSELLRDFTVEVVGEPVH 497 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~-~~~~~~~L~~~G--~~Vi~~D~~G~G~S-----~~~~~~~s~~~~a~dl~~ll~~l~~~~v~ 497 (691)
.+..++|+||+..+.+. -...++-....| ...+.+.||..|.- ++....++-..+...|..+.+....++++
T Consensus 115 ~k~vlvFvHGfNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I~ 194 (377)
T COG4782 115 AKTVLVFVHGFNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRIY 194 (377)
T ss_pred CCeEEEEEcccCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCceEE
Confidence 47799999999876432 223343333333 56788899877752 22333556666666666666666678899
Q ss_pred EEEeChhHHHHHHHHHh--------CccccceEEEecCCC
Q 005554 498 LIGNSIGGYFVAIVACL--------WPAVVKSVVLINSAG 529 (691)
Q Consensus 498 lvGhS~GG~ial~~A~~--------~P~~V~~lVll~~~~ 529 (691)
|++||||..++++...+ -+.+++-+|+-+|-.
T Consensus 195 ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDi 234 (377)
T COG4782 195 LLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDI 234 (377)
T ss_pred EEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCC
Confidence 99999999999987653 234688888888753
No 174
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.49 E-value=0.00088 Score=73.24 Aligned_cols=104 Identities=21% Similarity=0.256 Sum_probs=67.7
Q ss_pred CCeEEEEcCCCCChHHH--HHHHHHHhcC-CCEEEEeCCCCCcCCCCCC-------cCCCHHHHHHHHHHHHHHhCC---
Q 005554 427 GPAILLVHGFGAFLEHY--RDNIYDIADG-GNRVWAITLLGFGRSEKPN-------IVYTELMWSELLRDFTVEVVG--- 493 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~--~~~~~~L~~~-G~~Vi~~D~~G~G~S~~~~-------~~~s~~~~a~dl~~ll~~l~~--- 493 (691)
+|.+|++-|=+.-...+ ..++..|+++ |--|+++++|-+|.|.+-. .-++.++..+|+..+++++..
T Consensus 29 gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~ 108 (434)
T PF05577_consen 29 GPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYN 108 (434)
T ss_dssp SEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhc
Confidence 56566664433222211 2244555543 6789999999999997522 246889999999999876641
Q ss_pred ----cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 494 ----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 494 ----~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
.|++++|-|+||++|..+-.+||+.|.+.+.-+++..
T Consensus 109 ~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 109 TAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp TGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred CCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 4799999999999999999999999999999888754
No 175
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.47 E-value=0.00071 Score=64.85 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=72.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhcCC-----CEEEEeCCCCC----cCCCC----CC-------cCCCHHHHHHHHHHH
Q 005554 428 PAILLVHGFGAFLEHYRDNIYDIADGG-----NRVWAITLLGF----GRSEK----PN-------IVYTELMWSELLRDF 487 (691)
Q Consensus 428 p~VlliHG~~~~~~~~~~~~~~L~~~G-----~~Vi~~D~~G~----G~S~~----~~-------~~~s~~~~a~dl~~l 487 (691)
-|.|||||++++......++..|.+.+ -=++.+|--|- |.=++ |- ..-+..++...+..+
T Consensus 46 iPTIfIhGsgG~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk~~ 125 (288)
T COG4814 46 IPTIFIHGSGGTASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLKKA 125 (288)
T ss_pred cceEEEecCCCChhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHHHH
Confidence 388999999999999999999998763 12555665552 11011 10 123455666666666
Q ss_pred HH----HhCCcCEEEEEeChhHHHHHHHHHhCcc-----ccceEEEecCCCC
Q 005554 488 TV----EVVGEPVHLIGNSIGGYFVAIVACLWPA-----VVKSVVLINSAGN 530 (691)
Q Consensus 488 l~----~l~~~~v~lvGhS~GG~ial~~A~~~P~-----~V~~lVll~~~~~ 530 (691)
+. +.++.++.+|||||||.-...|+..|-. .+..+|.++++.+
T Consensus 126 msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 126 MSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 54 4567899999999999999999887532 3899999998754
No 176
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=97.44 E-value=0.0055 Score=62.59 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=77.7
Q ss_pred CcEEEEEcCCCCCcCCHHHHHHHhCCCeEEEEEECCcccc---cCChhHHHHHHHHHHHHHHHHHhcCCcEEEEECCh--
Q 005554 45 GSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILS---RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRV-- 119 (691)
Q Consensus 45 ~~~l~W~r~dlRl~DN~aL~~A~~~~~~~~~f~~~~~~~~---~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g~~-- 119 (691)
+++++|.=-|.-.++++||.. ...++..+-| +-..+. .+-..+.-++.-+++.+.+.|+..|.......-++
T Consensus 2 ~~~~~lvLgdQL~~~~~al~~--d~~~~~vllv-E~~~~a~~~r~HkqKl~lv~aAMR~Fad~LraeG~~V~Y~~~~~~~ 78 (505)
T COG3046 2 MSSVVLVLGDQLSEDHSALGD--DRSQDGVLLV-ESAAEARYRRHHKQKLVLVFAAMRHFADELRAEGLKVRYERADDNS 78 (505)
T ss_pred CceEEEEeccccccccchhcc--CcccCcEEEe-hhHhHhhhhhcchhhhHHHHHHHHHHHHHHhhCCceeEEEEcCCcc
Confidence 457899999999999998866 2222222222 222211 22445677899999999999999999877665443
Q ss_pred -HHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCc
Q 005554 120 -ENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQT 173 (691)
Q Consensus 120 -~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~ 173 (691)
...|.+.++.+..+.|++.+--+.....+-+.+.. ..|+ ++..+.+.
T Consensus 79 ~~~~l~~~l~~~~~d~~~~~~p~~~~l~~~m~~L~~---~~g~----~i~~~~~~ 126 (505)
T COG3046 79 FGGELRRALEAYPGDRVQVQEPGDHRLEARMKSLSM---ALGI----EITEVENP 126 (505)
T ss_pred cchHHHHHHHhcCCCeEEEecCcchhHHHHHHhhhh---hcCc----eeEEecCc
Confidence 56788888999999999876544444443333332 3344 56665544
No 177
>KOG3101 consensus Esterase D [General function prediction only]
Probab=97.42 E-value=0.00033 Score=64.94 Aligned_cols=105 Identities=20% Similarity=0.171 Sum_probs=69.6
Q ss_pred CCeEEEEcCCCCChHHHHH---HHHHHhcCCCEEEEeCC--CCC---cCCCCCC-----------------cCCCHHH-H
Q 005554 427 GPAILLVHGFGAFLEHYRD---NIYDIADGGNRVWAITL--LGF---GRSEKPN-----------------IVYTELM-W 480 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~---~~~~L~~~G~~Vi~~D~--~G~---G~S~~~~-----------------~~~s~~~-~ 480 (691)
-|+|.++-|+.++.+.+.. +-..-.++|+.|+.+|- ||. |.++.-+ ..|.+.+ .
T Consensus 44 ~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv 123 (283)
T KOG3101|consen 44 CPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRMYDYV 123 (283)
T ss_pred CceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhHHHHH
Confidence 4789999999998776642 33344567999999994 554 2222100 0122222 2
Q ss_pred HHHHHHHHHH----hCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCC
Q 005554 481 SELLRDFTVE----VVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNV 531 (691)
Q Consensus 481 a~dl~~ll~~----l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~ 531 (691)
.+.+.+++.. +...++.+.||||||.=|+..+.+.|.+.+++-...|..++
T Consensus 124 ~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP 178 (283)
T KOG3101|consen 124 VKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNP 178 (283)
T ss_pred HHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCc
Confidence 3344444432 22356899999999999999999999999998888876554
No 178
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.40 E-value=0.0035 Score=65.41 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=98.0
Q ss_pred CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHh
Q 005554 492 VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQ 571 (691)
Q Consensus 492 ~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (691)
.+++++|.|.|==|..+...|+. ..||++++-+.-..... ...+......
T Consensus 170 ~i~~FvV~GaSKRGWTtWltaa~-D~RV~aivP~Vid~LN~-----------------------------~~~l~h~y~~ 219 (367)
T PF10142_consen 170 NIEKFVVTGASKRGWTTWLTAAV-DPRVKAIVPIVIDVLNM-----------------------------KANLEHQYRS 219 (367)
T ss_pred CccEEEEeCCchHhHHHHHhhcc-CcceeEEeeEEEccCCc-----------------------------HHHHHHHHHH
Confidence 56889999999999999999994 56899888665431110 0111111122
Q ss_pred hcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHhCCCc
Q 005554 572 CYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEHCAGI 651 (691)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~ 651 (691)
+-+..+..+.....+.+......+.+....... +......++++|.++|.|..|++..++...-.+.++....
T Consensus 220 yG~~ws~a~~dY~~~gi~~~l~tp~f~~L~~iv-------DP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G~K 292 (367)
T PF10142_consen 220 YGGNWSFAFQDYYNEGITQQLDTPEFDKLMQIV-------DPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPGEK 292 (367)
T ss_pred hCCCCccchhhhhHhCchhhcCCHHHHHHHHhc-------CHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCCCe
Confidence 211233333333333333344444433322221 2223446779999999999999999986666666665555
Q ss_pred EEEEe-CCCCCCCccChHHHHHHHHHHHHhhhCCCCCC
Q 005554 652 VIREL-DAGHCPHDEKPEEVNSIISEWIVTIESKVPAE 688 (691)
Q Consensus 652 ~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~~~~~~~ 688 (691)
.+.++ +++|.... ..+.+.|..|+.......+-+
T Consensus 293 ~lr~vPN~~H~~~~---~~~~~~l~~f~~~~~~~~~lP 327 (367)
T PF10142_consen 293 YLRYVPNAGHSLIG---SDVVQSLRAFYNRIQNGRPLP 327 (367)
T ss_pred eEEeCCCCCcccch---HHHHHHHHHHHHHHHcCCCCC
Confidence 56666 99998877 678888999999876554433
No 179
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.34 E-value=0.0015 Score=66.96 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=48.8
Q ss_pred hhcCCC-CcEEEEEeCCCCCCChhHHHHHHHHhCC-CcEEEEe-CCCCCCCccChH---HHHHHHHHHHHhh
Q 005554 616 LLEGFK-EKVLIIQGIKDPISDSKSKVAMFKEHCA-GIVIREL-DAGHCPHDEKPE---EVNSIISEWIVTI 681 (691)
Q Consensus 616 ~l~~i~-~PvLiI~G~~D~~vp~~~~~~~~~~~~~-~~~~~~~-~~GH~~~~e~pe---~v~~~I~~fL~~~ 681 (691)
.+..+. +|+|+++|..|..+|.......+..... .....+. +++|......+. +..+.+.+|+.+.
T Consensus 226 ~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 226 DAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERH 297 (299)
T ss_pred hHhhcCCcceEEEecCCCcccchhhhHHHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHHHh
Confidence 344555 7999999999999999877776666554 4444444 888988865433 7888889998864
No 180
>PLN02209 serine carboxypeptidase
Probab=97.32 E-value=0.022 Score=61.61 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=75.9
Q ss_pred EEEEEc---CeEEEEEEeCC-----CCCeEEEEcCCCCChHHHHHHHH----------------HHhc------CCCEEE
Q 005554 409 RIWRWN---GYQIQYTVAGK-----EGPAILLVHGFGAFLEHYRDNIY----------------DIAD------GGNRVW 458 (691)
Q Consensus 409 ~~~~~~---g~~i~y~~~g~-----~~p~VlliHG~~~~~~~~~~~~~----------------~L~~------~G~~Vi 458 (691)
.++.++ +..++|.-... ..|.||.+.|.++++..+-.+.+ .|.. +-.+++
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anll 121 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANII 121 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCCCCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCcEE
Confidence 455664 45677654432 26899999999887765532221 1111 125789
Q ss_pred EeC-CCCCcCCCCCC--cCCCHHHHHHHHHHHHHHh-------CCcCEEEEEeChhHHHHHHHHHhC----------ccc
Q 005554 459 AIT-LLGFGRSEKPN--IVYTELMWSELLRDFTVEV-------VGEPVHLIGNSIGGYFVAIVACLW----------PAV 518 (691)
Q Consensus 459 ~~D-~~G~G~S~~~~--~~~s~~~~a~dl~~ll~~l-------~~~~v~lvGhS~GG~ial~~A~~~----------P~~ 518 (691)
.+| ..|.|.|-... ...+.++.++++..+++.. ...+++|.|.|+||..+-.+|..- +-.
T Consensus 122 fiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~in 201 (437)
T PLN02209 122 FLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPIN 201 (437)
T ss_pred EecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCcee
Confidence 999 66999986432 2223333456666665442 235899999999999877776531 124
Q ss_pred cceEEEecCCCC
Q 005554 519 VKSVVLINSAGN 530 (691)
Q Consensus 519 V~~lVll~~~~~ 530 (691)
++|+++.++...
T Consensus 202 l~Gi~igng~td 213 (437)
T PLN02209 202 LQGYVLGNPITH 213 (437)
T ss_pred eeeEEecCcccC
Confidence 789999887643
No 181
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.0016 Score=71.80 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhc----------------CCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHH
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIAD----------------GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVE 490 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~----------------~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~ 490 (691)
+-||+||+|..|+-..-+.++..... ..|+.+++|+-+- -..-.+.++.++++-+.+.++.
T Consensus 89 GIPVLFIPGNAGSyKQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnEe---~tAm~G~~l~dQtEYV~dAIk~ 165 (973)
T KOG3724|consen 89 GIPVLFIPGNAGSYKQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNEE---FTAMHGHILLDQTEYVNDAIKY 165 (973)
T ss_pred CceEEEecCCCCchHHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccch---hhhhccHhHHHHHHHHHHHHHH
Confidence 66999999999987666666554431 1356667765321 0011234566777666665543
Q ss_pred h----CC---------cCEEEEEeChhHHHHHHHHHh---CccccceEEEecCCC
Q 005554 491 V----VG---------EPVHLIGNSIGGYFVAIVACL---WPAVVKSVVLINSAG 529 (691)
Q Consensus 491 l----~~---------~~v~lvGhS~GG~ial~~A~~---~P~~V~~lVll~~~~ 529 (691)
+ .. +.+++|||||||.+|..++.. .++.|.-+|..+++.
T Consensus 166 ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH 220 (973)
T KOG3724|consen 166 ILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPH 220 (973)
T ss_pred HHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcc
Confidence 2 11 349999999999999877653 234566666666653
No 182
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0086 Score=58.13 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=68.7
Q ss_pred CeEEEEcCCCCChHH--HHHHHHHHhcC-CCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCC--cCEEEEEeC
Q 005554 428 PAILLVHGFGAFLEH--YRDNIYDIADG-GNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG--EPVHLIGNS 502 (691)
Q Consensus 428 p~VlliHG~~~~~~~--~~~~~~~L~~~-G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~--~~v~lvGhS 502 (691)
.|+|++||++++... +..+.+.+.+. |..|++.|. |-| .....-....++++.+.+.+..... +-++++|.|
T Consensus 24 ~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~lei-g~g--~~~s~l~pl~~Qv~~~ce~v~~m~~lsqGynivg~S 100 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEI-GDG--IKDSSLMPLWEQVDVACEKVKQMPELSQGYNIVGYS 100 (296)
T ss_pred CCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEe-cCC--cchhhhccHHHHHHHHHHHHhcchhccCceEEEEEc
Confidence 589999999887655 66677777664 788999986 444 1111122455566655555543222 459999999
Q ss_pred hhHHHHHHHHHhCcc-ccceEEEecCC
Q 005554 503 IGGYFVAIVACLWPA-VVKSVVLINSA 528 (691)
Q Consensus 503 ~GG~ial~~A~~~P~-~V~~lVll~~~ 528 (691)
.||.++-.++..-++ .|+.+|.++++
T Consensus 101 QGglv~Raliq~cd~ppV~n~ISL~gP 127 (296)
T KOG2541|consen 101 QGGLVARALIQFCDNPPVKNFISLGGP 127 (296)
T ss_pred cccHHHHHHHHhCCCCCcceeEeccCC
Confidence 999999998877543 59999999886
No 183
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.13 E-value=0.012 Score=60.86 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCCCh---HHHHHHHHHHhcCCCEEEEeCCCCC--cCCCC-----------CCcC----------------
Q 005554 427 GPAILLVHGFGAFL---EHYRDNIYDIADGGNRVWAITLLGF--GRSEK-----------PNIV---------------- 474 (691)
Q Consensus 427 ~p~VlliHG~~~~~---~~~~~~~~~L~~~G~~Vi~~D~~G~--G~S~~-----------~~~~---------------- 474 (691)
.-+||++||.+.+. ....++-..|.++|++++++.+|.- ..... ....
T Consensus 87 ~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (310)
T PF12048_consen 87 QGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEA 166 (310)
T ss_pred ceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHh
Confidence 34899999998774 4455677788899999999988871 10000 0000
Q ss_pred CCH----HHHHHHHHHHH---HHhCCcCEEEEEeChhHHHHHHHHHhCcc-ccceEEEecCC
Q 005554 475 YTE----LMWSELLRDFT---VEVVGEPVHLIGNSIGGYFVAIVACLWPA-VVKSVVLINSA 528 (691)
Q Consensus 475 ~s~----~~~a~dl~~ll---~~l~~~~v~lvGhS~GG~ial~~A~~~P~-~V~~lVll~~~ 528 (691)
-.. +.+..-|.+++ ...+..+++||||+.|+..++.+....+. .+.++|++++-
T Consensus 167 ~~~~~~~~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~ 228 (310)
T PF12048_consen 167 EAREAYEERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAY 228 (310)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCC
Confidence 001 12222333333 34455669999999999999999988764 58999999985
No 184
>COG3150 Predicted esterase [General function prediction only]
Probab=97.12 E-value=0.003 Score=56.69 Aligned_cols=89 Identities=24% Similarity=0.331 Sum_probs=63.9
Q ss_pred EEEEcCCCCChHHHHHH--HHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHH
Q 005554 430 ILLVHGFGAFLEHYRDN--IYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYF 507 (691)
Q Consensus 430 VlliHG~~~~~~~~~~~--~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~i 507 (691)
||.+|||.++....... .+.+.+. .+-+.+ |. |....++...++.+..++..++.....|+|.|+||+.
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~~-~~~i~y-------~~-p~l~h~p~~a~~ele~~i~~~~~~~p~ivGssLGGY~ 72 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDED-VRDIEY-------ST-PHLPHDPQQALKELEKAVQELGDESPLIVGSSLGGYY 72 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhcc-ccceee-------ec-CCCCCCHHHHHHHHHHHHHHcCCCCceEEeecchHHH
Confidence 79999998887766543 2333332 222222 22 2334578889999999999999888999999999999
Q ss_pred HHHHHHhCccccceEEEecCCCC
Q 005554 508 VAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 508 al~~A~~~P~~V~~lVll~~~~~ 530 (691)
|..++.++- ++ .|+++|+..
T Consensus 73 At~l~~~~G--ir-av~~NPav~ 92 (191)
T COG3150 73 ATWLGFLCG--IR-AVVFNPAVR 92 (191)
T ss_pred HHHHHHHhC--Ch-hhhcCCCcC
Confidence 999999864 44 455677643
No 185
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=97.05 E-value=0.0025 Score=68.24 Aligned_cols=83 Identities=18% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCEE-----EE-eCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHh---CCcCEEEEEeChhHHHHHHHH
Q 005554 442 HYRDNIYDIADGGNRV-----WA-ITLLGFGRSEKPNIVYTELMWSELLRDFTVEV---VGEPVHLIGNSIGGYFVAIVA 512 (691)
Q Consensus 442 ~~~~~~~~L~~~G~~V-----i~-~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l---~~~~v~lvGhS~GG~ial~~A 512 (691)
.|..+++.|.+.||.. .+ +|+|--- . ..+++...+...++.. ..++++||||||||.++..+.
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~-----~---~~~~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl 137 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSP-----A---ERDEYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFL 137 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhch-----h---hHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHH
Confidence 7899999999888742 22 6776311 1 3334555555555443 257999999999999999988
Q ss_pred HhCcc------ccceEEEecCCCCCC
Q 005554 513 CLWPA------VVKSVVLINSAGNVI 532 (691)
Q Consensus 513 ~~~P~------~V~~lVll~~~~~~~ 532 (691)
...+. .|+++|.++++....
T Consensus 138 ~~~~~~~W~~~~i~~~i~i~~p~~Gs 163 (389)
T PF02450_consen 138 QWMPQEEWKDKYIKRFISIGTPFGGS 163 (389)
T ss_pred HhccchhhHHhhhhEEEEeCCCCCCC
Confidence 87743 599999999875443
No 186
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=96.92 E-value=0.0027 Score=70.77 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=65.1
Q ss_pred CCCeEEEEcCCCC---ChHHHHHHHHHHhcC--CCEEEEeCCC----CCcCCCCC--CcCCCHHHHHHH---HHHHHHHh
Q 005554 426 EGPAILLVHGFGA---FLEHYRDNIYDIADG--GNRVWAITLL----GFGRSEKP--NIVYTELMWSEL---LRDFTVEV 491 (691)
Q Consensus 426 ~~p~VlliHG~~~---~~~~~~~~~~~L~~~--G~~Vi~~D~~----G~G~S~~~--~~~~s~~~~a~d---l~~ll~~l 491 (691)
+.|.||+|||.+. +...+ ....|... |+-|+++++| |++.+... ...+.+.|+... +.+-++..
T Consensus 94 ~~pv~v~ihGG~~~~g~~~~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~f 171 (493)
T cd00312 94 SLPVMVWIHGGGFMFGSGSLY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAAF 171 (493)
T ss_pred CCCEEEEEcCCccccCCCCCC--ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 4789999999642 22221 22333333 3899999998 33333221 223445554443 33444555
Q ss_pred CC--cCEEEEEeChhHHHHHHHHHh--CccccceEEEecCCCC
Q 005554 492 VG--EPVHLIGNSIGGYFVAIVACL--WPAVVKSVVLINSAGN 530 (691)
Q Consensus 492 ~~--~~v~lvGhS~GG~ial~~A~~--~P~~V~~lVll~~~~~ 530 (691)
+. ++|.|+|+|.||..+..++.. .+..++++|++++...
T Consensus 172 ggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 172 GGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred CCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 55 579999999999999888775 2457899999987643
No 187
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=96.90 E-value=0.051 Score=56.59 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=50.2
Q ss_pred CEEEEeCCC-CCcCCCCCCc-CC-CHHHHHHHHHHHHHHh-------CCcCEEEEEeChhHHHHHHHHHhC---------
Q 005554 455 NRVWAITLL-GFGRSEKPNI-VY-TELMWSELLRDFTVEV-------VGEPVHLIGNSIGGYFVAIVACLW--------- 515 (691)
Q Consensus 455 ~~Vi~~D~~-G~G~S~~~~~-~~-s~~~~a~dl~~ll~~l-------~~~~v~lvGhS~GG~ial~~A~~~--------- 515 (691)
.+++.+|.| |.|.|-.... .+ +-+..++++..+++.+ ...+++|.|-|.||..+-.+|..-
T Consensus 2 aNvLfiDqPvGvGfSy~~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~ 81 (319)
T PLN02213 2 ANIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 81 (319)
T ss_pred ccEEEecCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhcccccC
Confidence 368999988 9999865321 22 2223345666555442 336899999999999888777642
Q ss_pred -ccccceEEEecCCCC
Q 005554 516 -PAVVKSVVLINSAGN 530 (691)
Q Consensus 516 -P~~V~~lVll~~~~~ 530 (691)
+-.++|+++-++...
T Consensus 82 ~~inLkGi~IGNg~t~ 97 (319)
T PLN02213 82 PPINLQGYMLGNPVTY 97 (319)
T ss_pred CceeeeEEEeCCCCCC
Confidence 125788888887543
No 188
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=96.83 E-value=0.014 Score=60.72 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCeEEEEcCCCCChH----H---HHHHHHHHhcCCCEEEEeCCCCCcCC-CCCCcCCCHHHHHHHHHHHHHHhCCcCEEE
Q 005554 427 GPAILLVHGFGAFLE----H---YRDNIYDIADGGNRVWAITLLGFGRS-EKPNIVYTELMWSELLRDFTVEVVGEPVHL 498 (691)
Q Consensus 427 ~p~VlliHG~~~~~~----~---~~~~~~~L~~~G~~Vi~~D~~G~G~S-~~~~~~~s~~~~a~dl~~ll~~l~~~~v~l 498 (691)
+|.||++||+|-... . ...+...|. ...++++|+.-...- ....-+..+.+.++-...+++..|.++++|
T Consensus 122 DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~~~~~~yPtQL~qlv~~Y~~Lv~~~G~~nI~L 199 (374)
T PF10340_consen 122 DPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSDEHGHKYPTQLRQLVATYDYLVESEGNKNIIL 199 (374)
T ss_pred CcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccCCCcCchHHHHHHHHHHHHHhccCCCeEEE
Confidence 689999999864322 1 122223333 368899987543200 111234456677777777887778899999
Q ss_pred EEeChhHHHHHHHHHhC--c---cccceEEEecCCCCCC
Q 005554 499 IGNSIGGYFVAIVACLW--P---AVVKSVVLINSAGNVI 532 (691)
Q Consensus 499 vGhS~GG~ial~~A~~~--P---~~V~~lVll~~~~~~~ 532 (691)
+|-|.||.+++.+...- + ..-+++|+++|.....
T Consensus 200 mGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 200 MGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred EecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 99999999999876531 1 1357999999986654
No 189
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=96.77 E-value=0.082 Score=56.85 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=79.1
Q ss_pred EEEEEEEc---CeEEEEEEeCC-----CCCeEEEEcCCCCChHHHHHHHHHHhc-----C-------------CCEEEEe
Q 005554 407 STRIWRWN---GYQIQYTVAGK-----EGPAILLVHGFGAFLEHYRDNIYDIAD-----G-------------GNRVWAI 460 (691)
Q Consensus 407 ~~~~~~~~---g~~i~y~~~g~-----~~p~VlliHG~~~~~~~~~~~~~~L~~-----~-------------G~~Vi~~ 460 (691)
..-++.++ +..++|.-... .+|.||.+.|+++.+..- .+..++.. . --+++-+
T Consensus 45 ysGYv~v~~~~~~~LFYwf~eS~~~P~~dPlvLWLnGGPGCSSl~-G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfL 123 (454)
T KOG1282|consen 45 YSGYVTVNESEGRQLFYWFFESENNPETDPLVLWLNGGPGCSSLG-GLFEENGPFRVKYNGKTLYLNPYSWNKEANILFL 123 (454)
T ss_pred ccceEECCCCCCceEEEEEEEccCCCCCCCEEEEeCCCCCccchh-hhhhhcCCeEEcCCCCcceeCCccccccccEEEE
Confidence 34577776 78899875542 278999999998776443 33332211 1 1358888
Q ss_pred CCC-CCcCCCCCCc---CCCHHHHHHHHHHHHHH----h---CCcCEEEEEeChhHHHHHHHHHh----C-----c-ccc
Q 005554 461 TLL-GFGRSEKPNI---VYTELMWSELLRDFTVE----V---VGEPVHLIGNSIGGYFVAIVACL----W-----P-AVV 519 (691)
Q Consensus 461 D~~-G~G~S~~~~~---~~s~~~~a~dl~~ll~~----l---~~~~v~lvGhS~GG~ial~~A~~----~-----P-~~V 519 (691)
|.| |.|.|-.... ..+-+..++|+..++.. . ...+++|.|-|++|..+-.+|.. + | -.+
T Consensus 124 d~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNL 203 (454)
T KOG1282|consen 124 DQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINL 203 (454)
T ss_pred ecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccc
Confidence 866 8888864321 23444556666665543 2 33789999999999887777753 2 1 247
Q ss_pred ceEEEecCCCCC
Q 005554 520 KSVVLINSAGNV 531 (691)
Q Consensus 520 ~~lVll~~~~~~ 531 (691)
+|+++-+|....
T Consensus 204 kG~~IGNg~td~ 215 (454)
T KOG1282|consen 204 KGYAIGNGLTDP 215 (454)
T ss_pred eEEEecCcccCc
Confidence 888888876443
No 190
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=96.75 E-value=0.051 Score=59.65 Aligned_cols=106 Identities=20% Similarity=0.208 Sum_probs=72.9
Q ss_pred CCCeEEEEcCC-CCChH-HHHHHHHHHhcCCCEEEEeCCCCCcCCCC--------CCcCCCHHHHHHHHHHHHHHhCC--
Q 005554 426 EGPAILLVHGF-GAFLE-HYRDNIYDIADGGNRVWAITLLGFGRSEK--------PNIVYTELMWSELLRDFTVEVVG-- 493 (691)
Q Consensus 426 ~~p~VlliHG~-~~~~~-~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~--------~~~~~s~~~~a~dl~~ll~~l~~-- 493 (691)
++|++|..-|. |.+.. .|....-.|.++|+-.-....||=|.=.. ....-++.|+.+....+++.=-.
T Consensus 447 ~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~ 526 (682)
T COG1770 447 SAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSP 526 (682)
T ss_pred CCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCc
Confidence 36677776663 33322 23333334667887666666787665332 12345788888777777754222
Q ss_pred cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCC
Q 005554 494 EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNV 531 (691)
Q Consensus 494 ~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~ 531 (691)
+.++++|-|.||+++...+...|+.++++|+-.|..++
T Consensus 527 ~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDv 564 (682)
T COG1770 527 DRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDV 564 (682)
T ss_pred cceEEeccCchhHHHHHHHhhChhhhhheeecCCccch
Confidence 56999999999999999999999999999999887553
No 191
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=96.73 E-value=0.0024 Score=63.54 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCCCh---HHHHHHHHHHhc--CCCEEEEeCCCCCcCC-CCCC-cCCCHHHHHHHHHHHHHHhCC--cCEE
Q 005554 427 GPAILLVHGFGAFL---EHYRDNIYDIAD--GGNRVWAITLLGFGRS-EKPN-IVYTELMWSELLRDFTVEVVG--EPVH 497 (691)
Q Consensus 427 ~p~VlliHG~~~~~---~~~~~~~~~L~~--~G~~Vi~~D~~G~G~S-~~~~-~~~s~~~~a~dl~~ll~~l~~--~~v~ 497 (691)
..|||+.||+|.+. ..+..+.+.+.+ -|..|.+++. |-+.+ +... --.++.++++.+.+.+..... .-++
T Consensus 5 ~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~i-g~~~~~D~~~s~f~~v~~Qv~~vc~~l~~~p~L~~G~~ 83 (279)
T PF02089_consen 5 PLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEI-GNDPSEDVENSFFGNVNDQVEQVCEQLANDPELANGFN 83 (279)
T ss_dssp S--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--S-SSSHHHHHHHHHHSHHHHHHHHHHHHHHH-GGGTT-EE
T ss_pred CCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEE-CCCcchhhhhhHHHHHHHHHHHHHHHHhhChhhhccee
Confidence 45899999998753 234444333332 2778888876 32211 1111 012455566666666654321 4599
Q ss_pred EEEeChhHHHHHHHHHhCcc-ccceEEEecCCCC
Q 005554 498 LIGNSIGGYFVAIVACLWPA-VVKSVVLINSAGN 530 (691)
Q Consensus 498 lvGhS~GG~ial~~A~~~P~-~V~~lVll~~~~~ 530 (691)
+||+|.||.++-.++.+.|+ .|+.+|.++++-.
T Consensus 84 ~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph~ 117 (279)
T PF02089_consen 84 AIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPHM 117 (279)
T ss_dssp EEEETCHHHHHHHHHHH-TSS-EEEEEEES--TT
T ss_pred eeeeccccHHHHHHHHHCCCCCceeEEEecCccc
Confidence 99999999999999999864 6999999998643
No 192
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.65 E-value=0.0094 Score=61.29 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=76.4
Q ss_pred CCeEEEEcCCCCChHHHHH---HHHHHhc-CCCEEEEeCCCCCcCCCCCC----------cCCCHHHHHHHHHHHHHHhC
Q 005554 427 GPAILLVHGFGAFLEHYRD---NIYDIAD-GGNRVWAITLLGFGRSEKPN----------IVYTELMWSELLRDFTVEVV 492 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~---~~~~L~~-~G~~Vi~~D~~G~G~S~~~~----------~~~s~~~~a~dl~~ll~~l~ 492 (691)
+-+|+|--|.-++-+.+.. ++-.++. .+--+|..+.|-+|+|.+=. +-++.++..+|...++.+++
T Consensus 80 ~gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK 159 (492)
T KOG2183|consen 80 EGPIFFYTGNEGDIEWFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLK 159 (492)
T ss_pred CCceEEEeCCcccHHHHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHh
Confidence 3688999998777665542 3333332 24568899999999997511 23567777778888887775
Q ss_pred C------cCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 493 G------EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 493 ~------~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
. .+++.+|-|+||+++..+=.+||+.|.|.+.-+.+
T Consensus 160 ~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAP 201 (492)
T KOG2183|consen 160 RDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAP 201 (492)
T ss_pred hccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCc
Confidence 4 57999999999999999999999999888776665
No 193
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=96.63 E-value=0.015 Score=49.82 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=42.9
Q ss_pred CCcchHHHHHHHhhhHH-HHHHHHHhhhccCCCCCceEEEEEEEcCeEEEEEEeCCC---CCeEEEEcCCCCChHHHHHH
Q 005554 371 FGYSAATIAAAADAVCS-MEWYWLMSLRSLRSNEGVYSTRIWRWNGYQIQYTVAGKE---GPAILLVHGFGAFLEHYRDN 446 (691)
Q Consensus 371 ~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~y~~~g~~---~p~VlliHG~~~~~~~~~~~ 446 (691)
.|....++..+++-+.. .+|.+..+. ...++...++++|.+||+....++ ..||||+||++++...|.++
T Consensus 38 ~G~~~~~l~~L~~yW~~~fDWr~~E~~------lN~~phf~t~I~g~~iHFih~rs~~~~aiPLll~HGWPgSf~Ef~~v 111 (112)
T PF06441_consen 38 YGTPLDWLKELVDYWRNEFDWRKHEAR------LNSFPHFKTEIDGLDIHFIHVRSKRPNAIPLLLLHGWPGSFLEFLKV 111 (112)
T ss_dssp TSS-HHHHHHHHHHHHHT--HHHHHHH------HTTS-EEEEEETTEEEEEEEE--S-TT-EEEEEE--SS--GGGGHHH
T ss_pred cCCCHHHHHHHHHHHhhcCChHHHHHH------HHcCCCeeEEEeeEEEEEEEeeCCCCCCeEEEEECCCCccHHhHHhh
Confidence 57777788777777663 566443322 235666778889999999876543 45999999999998777665
Q ss_pred H
Q 005554 447 I 447 (691)
Q Consensus 447 ~ 447 (691)
+
T Consensus 112 I 112 (112)
T PF06441_consen 112 I 112 (112)
T ss_dssp H
T ss_pred C
Confidence 3
No 194
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.52 E-value=0.17 Score=49.42 Aligned_cols=91 Identities=23% Similarity=0.245 Sum_probs=58.1
Q ss_pred eEEEEcCC--CC-ChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHH--------HHHHHHHHhCC----
Q 005554 429 AILLVHGF--GA-FLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSE--------LLRDFTVEVVG---- 493 (691)
Q Consensus 429 ~VlliHG~--~~-~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~--------dl~~ll~~l~~---- 493 (691)
.|=|+-|. |. ..-.|+.+.+.|+++||.|++.-+.- | ++-...++ .+..+.+.-+.
T Consensus 19 vihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~-t--------fDH~~~A~~~~~~f~~~~~~L~~~~~~~~~~ 89 (250)
T PF07082_consen 19 VIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVV-T--------FDHQAIAREVWERFERCLRALQKRGGLDPAY 89 (250)
T ss_pred EEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCC-C--------CcHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 44455553 22 34578899999999999999986521 1 11112222 12222222121
Q ss_pred cCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 494 EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 494 ~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
-|++-||||||+-+-+.+...++..-++-|+++-.
T Consensus 90 lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSFN 124 (250)
T PF07082_consen 90 LPVYGVGHSLGCKLHLLIGSLFDVERAGNILISFN 124 (250)
T ss_pred CCeeeeecccchHHHHHHhhhccCcccceEEEecC
Confidence 36788999999999999988877666788888753
No 195
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.29 E-value=0.015 Score=49.26 Aligned_cols=61 Identities=15% Similarity=0.304 Sum_probs=50.8
Q ss_pred CCcEEEEEeCCCCCCChhHHHHHHHHhCCCcEEEEe-CCCCCCCccChHHHHHHHHHHHHhhh
Q 005554 621 KEKVLIIQGIKDPISDSKSKVAMFKEHCAGIVIREL-DAGHCPHDEKPEEVNSIISEWIVTIE 682 (691)
Q Consensus 621 ~~PvLiI~G~~D~~vp~~~~~~~~~~~~~~~~~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~ 682 (691)
..|+|+|.++.|+.+|.+ ..+.+.+.++++.++.. +.||-.+...-.-+.+.+.+||..-.
T Consensus 34 ~~piL~l~~~~Dp~TP~~-~a~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~G~ 95 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYE-GARAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLLDGT 95 (103)
T ss_pred CCCEEEEecCcCCCCcHH-HHHHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHHcCC
Confidence 589999999999999998 46667777888888777 88999887555778899999998643
No 196
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=96.21 E-value=0.0083 Score=63.70 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=68.0
Q ss_pred CCeEEEEcCCC---CChHHHHHHHHHHhcCC-CEEEEeCCC----CC------cCCCCCCcCCCHHHHH---HHHHHHHH
Q 005554 427 GPAILLVHGFG---AFLEHYRDNIYDIADGG-NRVWAITLL----GF------GRSEKPNIVYTELMWS---ELLRDFTV 489 (691)
Q Consensus 427 ~p~VlliHG~~---~~~~~~~~~~~~L~~~G-~~Vi~~D~~----G~------G~S~~~~~~~s~~~~a---~dl~~ll~ 489 (691)
.|.+|+|||.+ ++......--..|+++| +-|+++++| |+ +..+....+..+.|+. +.+.+-|+
T Consensus 94 ~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~NIe 173 (491)
T COG2272 94 LPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLLDQILALKWVRDNIE 173 (491)
T ss_pred CcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccccccccccHHHHHHHHHHHHHHHH
Confidence 69999999963 33333233456677777 888888876 22 1111111234455543 45556677
Q ss_pred HhCC--cCEEEEEeChhHHHHHHHHHhCc---cccceEEEecCCCC
Q 005554 490 EVVG--EPVHLIGNSIGGYFVAIVACLWP---AVVKSVVLINSAGN 530 (691)
Q Consensus 490 ~l~~--~~v~lvGhS~GG~ial~~A~~~P---~~V~~lVll~~~~~ 530 (691)
++|. ++|.|+|+|.||+.++.+.+. | ..++++|+.++...
T Consensus 174 ~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 174 AFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred HhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 8887 469999999999999887764 4 36888888888754
No 197
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=96.09 E-value=0.094 Score=56.89 Aligned_cols=118 Identities=18% Similarity=0.135 Sum_probs=79.0
Q ss_pred EEEEcCeEEEEEEeCC-----CCCeEEEEcCCCCC--hHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCC--------CcC
Q 005554 410 IWRWNGYQIQYTVAGK-----EGPAILLVHGFGAF--LEHYRDNIYDIADGGNRVWAITLLGFGRSEKP--------NIV 474 (691)
Q Consensus 410 ~~~~~g~~i~y~~~g~-----~~p~VlliHG~~~~--~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~--------~~~ 474 (691)
..+-||.+|+|...++ +.|++|+--|...- .-.|........++|...+..+.||-|+=... ...
T Consensus 399 atSkDGT~IPYFiv~K~~~~d~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq 478 (648)
T COG1505 399 ATSKDGTRIPYFIVRKGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQ 478 (648)
T ss_pred EEcCCCccccEEEEecCCcCCCCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcch
Confidence 4455899999987741 25677666554332 22345555667788999999999998764321 112
Q ss_pred CCHHHHHHHHHHHHHHhCC---cCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 475 YTELMWSELLRDFTVEVVG---EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 475 ~s~~~~a~dl~~ll~~l~~---~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
-.++|+.....++++. ++ +++.+.|-|-||.+.-.+..++|+.+-++|+-.|.
T Consensus 479 ~vfdDf~AVaedLi~r-gitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPl 534 (648)
T COG1505 479 NVFDDFIAVAEDLIKR-GITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPL 534 (648)
T ss_pred hhhHHHHHHHHHHHHh-CCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccch
Confidence 2344454444444433 23 46889999999999999999999988887776654
No 198
>COG0627 Predicted esterase [General function prediction only]
Probab=96.02 E-value=0.018 Score=59.26 Aligned_cols=106 Identities=19% Similarity=0.139 Sum_probs=65.8
Q ss_pred CCeEEEEcCCCCChHHHH---HHHHHHhcCCCEEEEeCC--------------CCCcCCCCCC-------c-CCCHHHH-
Q 005554 427 GPAILLVHGFGAFLEHYR---DNIYDIADGGNRVWAITL--------------LGFGRSEKPN-------I-VYTELMW- 480 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~---~~~~~L~~~G~~Vi~~D~--------------~G~G~S~~~~-------~-~~s~~~~- 480 (691)
=|+++++||..++...+. .+-....+.|..++++|- .|-+.|-..+ . .+.++++
T Consensus 54 ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~tfl 133 (316)
T COG0627 54 IPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWETFL 133 (316)
T ss_pred CCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchhHHH
Confidence 467778888777643221 223333445677777632 2333322111 1 2555543
Q ss_pred HHHHHHHHHH-hCC----cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCC
Q 005554 481 SELLRDFTVE-VVG----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVI 532 (691)
Q Consensus 481 a~dl~~ll~~-l~~----~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~ 532 (691)
.+.+-..+++ ... +...++||||||.=|+.+|+++|++++.+..+++...+.
T Consensus 134 ~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s 190 (316)
T COG0627 134 TQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPS 190 (316)
T ss_pred HhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccc
Confidence 4455544443 331 268999999999999999999999999999998875543
No 199
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=95.94 E-value=0.019 Score=52.80 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHh----CCcCEEEEEeChhHHHHHHHHHhCcc----ccceEEEecCCC
Q 005554 480 WSELLRDFTVEV----VGEPVHLIGNSIGGYFVAIVACLWPA----VVKSVVLINSAG 529 (691)
Q Consensus 480 ~a~dl~~ll~~l----~~~~v~lvGhS~GG~ial~~A~~~P~----~V~~lVll~~~~ 529 (691)
+.+.+...++.. ...+++++|||+||.+|..++..... .+..++.++++.
T Consensus 10 ~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~ 67 (153)
T cd00741 10 LANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPR 67 (153)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCc
Confidence 344444444443 56789999999999999999987754 567788887763
No 200
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=95.93 E-value=0.0074 Score=63.50 Aligned_cols=89 Identities=17% Similarity=0.026 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCE------EEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHh
Q 005554 441 EHYRDNIYDIADGGNR------VWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 441 ~~~~~~~~~L~~~G~~------Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~ 514 (691)
..|..+++.|..-||. -..+|+|=.-. .....+..+..+..-|+...+.-+.+|++||+|||||.+.+.+...
T Consensus 124 ~~w~~~i~~lv~~GYe~~~~l~ga~YDwRls~~-~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~w 202 (473)
T KOG2369|consen 124 WYWHELIENLVGIGYERGKTLFGAPYDWRLSYH-NSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLKW 202 (473)
T ss_pred HHHHHHHHHHHhhCcccCceeeccccchhhccC-ChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHhc
Confidence 5788899999988876 34567762110 0111123344455555555555666999999999999999999988
Q ss_pred Ccc--------ccceEEEecCCCC
Q 005554 515 WPA--------VVKSVVLINSAGN 530 (691)
Q Consensus 515 ~P~--------~V~~lVll~~~~~ 530 (691)
+++ .|+++|-++++..
T Consensus 203 ~~~~~~~W~~k~I~sfvnig~p~l 226 (473)
T KOG2369|consen 203 VEAEGPAWCDKYIKSFVNIGAPWL 226 (473)
T ss_pred ccccchhHHHHHHHHHHccCchhc
Confidence 876 3777777776533
No 201
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=95.87 E-value=0.025 Score=63.77 Aligned_cols=103 Identities=20% Similarity=0.108 Sum_probs=61.9
Q ss_pred CCeEEEEcCCCC---Ch-HHHHHHHHHHhcCCCEEEEeCCC----CCcCCCCC--C-cCCCHHHHHHHHHHH---HHHhC
Q 005554 427 GPAILLVHGFGA---FL-EHYRDNIYDIADGGNRVWAITLL----GFGRSEKP--N-IVYTELMWSELLRDF---TVEVV 492 (691)
Q Consensus 427 ~p~VlliHG~~~---~~-~~~~~~~~~L~~~G~~Vi~~D~~----G~G~S~~~--~-~~~s~~~~a~dl~~l---l~~l~ 492 (691)
-|++|+|||.+. +. .....-...+.+++.-||++++| |+-.+... . ..+.+.|+...|.-+ |...|
T Consensus 125 lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FG 204 (535)
T PF00135_consen 125 LPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAAFG 204 (535)
T ss_dssp EEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGGGT
T ss_pred cceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccCchhhhhhhhHHHHHHHHhhhhhcc
Confidence 489999999642 22 12223334455668999999987 44333222 1 456666665544444 44556
Q ss_pred C--cCEEEEEeChhHHHHHHHHHhC--ccccceEEEecCCC
Q 005554 493 G--EPVHLIGNSIGGYFVAIVACLW--PAVVKSVVLINSAG 529 (691)
Q Consensus 493 ~--~~v~lvGhS~GG~ial~~A~~~--P~~V~~lVll~~~~ 529 (691)
+ ++|.|+|||.||..+......- ...++++|+.++..
T Consensus 205 GDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~ 245 (535)
T PF00135_consen 205 GDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSA 245 (535)
T ss_dssp EEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--T
T ss_pred cCCcceeeeeecccccccceeeecccccccccccccccccc
Confidence 5 5699999999999988877652 24799999999854
No 202
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=95.82 E-value=0.016 Score=63.10 Aligned_cols=88 Identities=14% Similarity=-0.009 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCCCCC--CcCCCHHHHHHHHHHHHHH----hCCcCEEEEEeChhHHHHHHHHHhC
Q 005554 442 HYRDNIYDIADGGNRVWAITLLGFGRSEKP--NIVYTELMWSELLRDFTVE----VVGEPVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 442 ~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~--~~~~s~~~~a~dl~~ll~~----l~~~~v~lvGhS~GG~ial~~A~~~ 515 (691)
.|..+++.|++.||. -.|+.|....-+. ......+.+-..+..+++. -+.++++|+||||||.+++.+...-
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~wv 234 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKWV 234 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeecccccccCccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHhc
Confidence 678999999999986 2333332221111 1011123444445555443 3458999999999999999876532
Q ss_pred -----------c----cccceEEEecCCCCC
Q 005554 516 -----------P----AVVKSVVLINSAGNV 531 (691)
Q Consensus 516 -----------P----~~V~~lVll~~~~~~ 531 (691)
+ ..|++.|.++++...
T Consensus 235 ~~~~~~gG~gG~~W~dKyI~s~I~Iagp~lG 265 (642)
T PLN02517 235 EAPAPMGGGGGPGWCAKHIKAVMNIGGPFLG 265 (642)
T ss_pred cccccccCCcchHHHHHHHHHheecccccCC
Confidence 1 258999999987443
No 203
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.073 Score=49.80 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=63.9
Q ss_pred CCeEEEEcCCCCC-hHHHH---------------HHHHHHhcCCCEEEEeCCCC---CcCCCCCCcCC--C-HHHHHHHH
Q 005554 427 GPAILLVHGFGAF-LEHYR---------------DNIYDIADGGNRVWAITLLG---FGRSEKPNIVY--T-ELMWSELL 484 (691)
Q Consensus 427 ~p~VlliHG~~~~-~~~~~---------------~~~~~L~~~G~~Vi~~D~~G---~G~S~~~~~~~--s-~~~~a~dl 484 (691)
...+|+|||.|.- ...|. ++++.-.+.||.|+..+.-- +-.+...+..| + .+...-..
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw 180 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVW 180 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHH
Confidence 5589999997642 23332 34555556699999987431 11111111111 2 22222223
Q ss_pred HHHHHHhCCcCEEEEEeChhHHHHHHHHHhCcc--ccceEEEecCC
Q 005554 485 RDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPA--VVKSVVLINSA 528 (691)
Q Consensus 485 ~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~--~V~~lVll~~~ 528 (691)
..++.-.....++++.||.||...+.+..++|+ +|.++.+.+++
T Consensus 181 ~~~v~pa~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 181 KNIVLPAKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSA 226 (297)
T ss_pred HHHhcccCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccc
Confidence 334444455789999999999999999999885 68888888776
No 204
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.036 Score=60.34 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=68.2
Q ss_pred CCeEEEEcCCCC-Ch-HHHHHHHHHHhcCCCEEEEeCCCCCcCCCC---CC-----cCCCHHHHHHHHHHHHHHh--CCc
Q 005554 427 GPAILLVHGFGA-FL-EHYRDNIYDIADGGNRVWAITLLGFGRSEK---PN-----IVYTELMWSELLRDFTVEV--VGE 494 (691)
Q Consensus 427 ~p~VlliHG~~~-~~-~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~---~~-----~~~s~~~~a~dl~~ll~~l--~~~ 494 (691)
+|.+|..+|.-+ +- -.|..--..|.+.|+-....|.||-|.=.. .. ..-+++|+..-...+++.= ...
T Consensus 470 ~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~ 549 (712)
T KOG2237|consen 470 KPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPS 549 (712)
T ss_pred CceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCcc
Confidence 567776666422 21 123222223455788777889999775432 11 2345666666666665431 236
Q ss_pred CEEEEEeChhHHHHHHHHHhCccccceEEEecCCC
Q 005554 495 PVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529 (691)
Q Consensus 495 ~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~ 529 (691)
+..+.|.|.||.++..++..+|+.+.++|+--|..
T Consensus 550 kL~i~G~SaGGlLvga~iN~rPdLF~avia~Vpfm 584 (712)
T KOG2237|consen 550 KLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFM 584 (712)
T ss_pred ceeEecccCccchhHHHhccCchHhhhhhhcCcce
Confidence 78999999999999999999999999998877653
No 205
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=95.62 E-value=0.096 Score=54.80 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=31.6
Q ss_pred cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCC
Q 005554 494 EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAG 529 (691)
Q Consensus 494 ~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~ 529 (691)
-|++++|+|.||++|..+|..-|..+.++|=-++..
T Consensus 184 lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~ 219 (403)
T PF11144_consen 184 LPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYA 219 (403)
T ss_pred CcEEEEecCcHHHHHHHHHhhCccceeEEEecCccc
Confidence 389999999999999999999999999888766653
No 206
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=95.58 E-value=0.036 Score=57.09 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=67.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHh----CCcCEEEEEeC
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEV----VGEPVHLIGNS 502 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l----~~~~v~lvGhS 502 (691)
...-||+.|=|+..+.=+.+.+.|.++|+.|+.+|-.-|=.|.+ +.++.++|+..+++.. +.+++.|+|+|
T Consensus 260 d~~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLRYfW~~r-----tPe~~a~Dl~r~i~~y~~~w~~~~~~liGyS 334 (456)
T COG3946 260 DTVAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLRYFWSER-----TPEQIAADLSRLIRFYARRWGAKRVLLIGYS 334 (456)
T ss_pred ceEEEEEecCCchhhhhHHHHHHHHHCCCceeeeehhhhhhccC-----CHHHHHHHHHHHHHHHHHhhCcceEEEEeec
Confidence 44677888888877766789999999999999999665655543 5677888888888654 55889999999
Q ss_pred hhHHHHHHHHHhCcc
Q 005554 503 IGGYFVAIVACLWPA 517 (691)
Q Consensus 503 ~GG~ial~~A~~~P~ 517 (691)
+|+-+.-..-.+.|.
T Consensus 335 fGADvlP~~~n~L~~ 349 (456)
T COG3946 335 FGADVLPFAYNRLPP 349 (456)
T ss_pred ccchhhHHHHHhCCH
Confidence 999887776665554
No 207
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=95.55 E-value=2.2 Score=42.30 Aligned_cols=102 Identities=10% Similarity=0.057 Sum_probs=75.2
Q ss_pred CCeEEEEcCCCCC-hHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhH
Q 005554 427 GPAILLVHGFGAF-LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGG 505 (691)
Q Consensus 427 ~p~VlliHG~~~~-~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG 505 (691)
.|.||++-.+.++ ....+..++.|... ..|+..|+-.--.-....+.++++++.+.+.+.+..+|.+ +++++.+.-+
T Consensus 103 dPkvLivapmsGH~aTLLR~TV~alLp~-~~vyitDW~dAr~Vp~~~G~FdldDYIdyvie~~~~~Gp~-~hv~aVCQP~ 180 (415)
T COG4553 103 DPKVLIVAPMSGHYATLLRGTVEALLPY-HDVYITDWVDARMVPLEAGHFDLDDYIDYVIEMINFLGPD-AHVMAVCQPT 180 (415)
T ss_pred CCeEEEEecccccHHHHHHHHHHHhccc-cceeEeeccccceeecccCCccHHHHHHHHHHHHHHhCCC-CcEEEEecCC
Confidence 4677777777665 45566778888775 7899999865443333456899999999999999999865 8888887654
Q ss_pred H-----HHHHHHHhCccccceEEEecCCCC
Q 005554 506 Y-----FVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 506 ~-----ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
. ++++.+...|..-..+++++++..
T Consensus 181 vPvLAAisLM~~~~~p~~PssMtlmGgPID 210 (415)
T COG4553 181 VPVLAAISLMEEDGDPNVPSSMTLMGGPID 210 (415)
T ss_pred chHHHHHHHHHhcCCCCCCceeeeecCccc
Confidence 4 444444556777889999998754
No 208
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=95.37 E-value=0.039 Score=49.68 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhC
Q 005554 479 MWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 479 ~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~ 515 (691)
...+.+..+++.....++++.|||+||.+|..++...
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhh
Confidence 4556666666666666799999999999999988763
No 209
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.13 E-value=0.052 Score=53.07 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhC----ccccceEEEecCCCC
Q 005554 479 MWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLW----PAVVKSVVLINSAGN 530 (691)
Q Consensus 479 ~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~----P~~V~~lVll~~~~~ 530 (691)
...+.+..+++..+. ++.+.|||.||.+|..+|+.. .++|.+++..++++.
T Consensus 70 ~A~~yl~~~~~~~~~-~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPGf 124 (224)
T PF11187_consen 70 SALAYLKKIAKKYPG-KIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPGF 124 (224)
T ss_pred HHHHHHHHHHHhCCC-CEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCCC
Confidence 344555555655554 599999999999999998873 357899999998754
No 210
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.09 E-value=0.11 Score=55.23 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=78.9
Q ss_pred CCCCeEEEEcCCCCChHHHH-----HHHHHHhcCCCEEEEeCCCCCcCCCCCC-------cCCCHHHHHHHHHHHHHHhC
Q 005554 425 KEGPAILLVHGFGAFLEHYR-----DNIYDIADGGNRVWAITLLGFGRSEKPN-------IVYTELMWSELLRDFTVEVV 492 (691)
Q Consensus 425 ~~~p~VlliHG~~~~~~~~~-----~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-------~~~s~~~~a~dl~~ll~~l~ 492 (691)
+++|..|+|-|=|.-...|- .....-.+.|-.|+.+++|-+|.|.+.. .-.+.++...|+.++++++.
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n 163 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMN 163 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 35788888887443332221 1222223347899999999999886422 13577888899999998875
Q ss_pred C-------cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCC
Q 005554 493 G-------EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNV 531 (691)
Q Consensus 493 ~-------~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~ 531 (691)
. .+++.+|.|+-|.++..+=.+||+.+.|.|.-+++...
T Consensus 164 ~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~A 209 (514)
T KOG2182|consen 164 AKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVLA 209 (514)
T ss_pred hhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccceeE
Confidence 4 28999999999999999999999999999988776443
No 211
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=94.63 E-value=0.038 Score=57.35 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=85.7
Q ss_pred EEEEEEeCCCCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc---CCCHHHHHHHHHHHHHHhCC
Q 005554 417 QIQYTVAGKEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI---VYTELMWSELLRDFTVEVVG 493 (691)
Q Consensus 417 ~i~y~~~g~~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~---~~s~~~~a~dl~~ll~~l~~ 493 (691)
+|...+.+.+.|+|+..-|++.+....+.-...|.+ -+-+.+++|-+|.|.+.+. .+++++.+.|...+++.+..
T Consensus 53 RvtLlHk~~drPtV~~T~GY~~~~~p~r~Ept~Lld--~NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~ 130 (448)
T PF05576_consen 53 RVTLLHKDFDRPTVLYTEGYNVSTSPRRSEPTQLLD--GNQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKP 130 (448)
T ss_pred EEEEEEcCCCCCeEEEecCcccccCccccchhHhhc--cceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHh
Confidence 455556666689999999998764333222223333 4779999999999987553 56899999999999888753
Q ss_pred ---cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 494 ---EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 494 ---~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
.+.+--|.|-||+.++.+=.-||+.|.+.|.-..+.+
T Consensus 131 iY~~kWISTG~SKGGmTa~y~rrFyP~DVD~tVaYVAP~~ 170 (448)
T PF05576_consen 131 IYPGKWISTGGSKGGMTAVYYRRFYPDDVDGTVAYVAPND 170 (448)
T ss_pred hccCCceecCcCCCceeEEEEeeeCCCCCCeeeeeecccc
Confidence 6788899999999999988889999999987666543
No 212
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=94.02 E-value=0.093 Score=51.70 Aligned_cols=48 Identities=29% Similarity=0.475 Sum_probs=38.5
Q ss_pred HHHHHHHHHH-h--CCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 481 SELLRDFTVE-V--VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 481 a~dl~~ll~~-l--~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
.+.+.-+++. . +.++-.++|||+||.+++.....+|+.+...++++|.
T Consensus 121 ~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPS 171 (264)
T COG2819 121 TEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPS 171 (264)
T ss_pred HHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecch
Confidence 3444445544 2 3356899999999999999999999999999999986
No 213
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.68 E-value=0.12 Score=46.77 Aligned_cols=112 Identities=16% Similarity=0.272 Sum_probs=69.5
Q ss_pred CeEEEEEEeCCCCCeEEEEcCCCCChHHHHH--HHHHHh---cCC-CEEEEeCCCCCcCCCC----CCcCCCHHHHHHHH
Q 005554 415 GYQIQYTVAGKEGPAILLVHGFGAFLEHYRD--NIYDIA---DGG-NRVWAITLLGFGRSEK----PNIVYTELMWSELL 484 (691)
Q Consensus 415 g~~i~y~~~g~~~p~VlliHG~~~~~~~~~~--~~~~L~---~~G-~~Vi~~D~~G~G~S~~----~~~~~s~~~~a~dl 484 (691)
+.++.+..+|..+.+||+.+--++....|.. .+..|+ +.| ...++++ |-..-+. .......+.....-
T Consensus 14 ~RdMel~ryGHaG~pVvvFpts~Grf~eyed~G~v~ala~fie~G~vQlft~~--gldsESf~a~h~~~adr~~rH~Aye 91 (227)
T COG4947 14 NRDMELNRYGHAGIPVVVFPTSGGRFNEYEDFGMVDALASFIEEGLVQLFTLS--GLDSESFLATHKNAADRAERHRAYE 91 (227)
T ss_pred cchhhhhhccCCCCcEEEEecCCCcchhhhhcccHHHHHHHHhcCcEEEEEec--ccchHhHhhhcCCHHHHHHHHHHHH
Confidence 3456667778777788888877776666653 233333 334 3444443 3221111 11111233333333
Q ss_pred HHHHHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 485 RDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 485 ~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
.-++++.-....++-|.||||..|..+.-++|+...++|.+++.
T Consensus 92 rYv~eEalpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGv 135 (227)
T COG4947 92 RYVIEEALPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGV 135 (227)
T ss_pred HHHHHhhcCCCccccccchhhhhhhhhheeChhHhhhheeecce
Confidence 44555544456778899999999999999999999999999986
No 214
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=93.62 E-value=3.5 Score=48.60 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=68.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCC-CCCcCCCHHHHHHHHHHHHHHhCC-cCEEEEEeC
Q 005554 425 KEGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSE-KPNIVYTELMWSELLRDFTVEVVG-EPVHLIGNS 502 (691)
Q Consensus 425 ~~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~-~~~~~~s~~~~a~dl~~ll~~l~~-~~v~lvGhS 502 (691)
.+.|+++|+|.+-+....+..++..|. .|.||.-- ......++++.+.....-++.+.. .|..++|+|
T Consensus 2121 se~~~~Ffv~pIEG~tt~l~~la~rle----------~PaYglQ~T~~vP~dSies~A~~yirqirkvQP~GPYrl~GYS 2190 (2376)
T KOG1202|consen 2121 SEEPPLFFVHPIEGFTTALESLASRLE----------IPAYGLQCTEAVPLDSIESLAAYYIRQIRKVQPEGPYRLAGYS 2190 (2376)
T ss_pred ccCCceEEEeccccchHHHHHHHhhcC----------CcchhhhccccCCcchHHHHHHHHHHHHHhcCCCCCeeeeccc
Confidence 358999999998777666666665542 24444322 222345788888877777777654 789999999
Q ss_pred hhHHHHHHHHHhCc--cccceEEEecCCCC
Q 005554 503 IGGYFVAIVACLWP--AVVKSVVLINSAGN 530 (691)
Q Consensus 503 ~GG~ial~~A~~~P--~~V~~lVll~~~~~ 530 (691)
+|+.++..+|.... +....+|++++...
T Consensus 2191 yG~~l~f~ma~~Lqe~~~~~~lillDGspt 2220 (2376)
T KOG1202|consen 2191 YGACLAFEMASQLQEQQSPAPLILLDGSPT 2220 (2376)
T ss_pred hhHHHHHHHHHHHHhhcCCCcEEEecCchH
Confidence 99999999987543 34667999998743
No 215
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=93.28 E-value=0.17 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.3
Q ss_pred CCcCEEEEEeChhHHHHHHHHHhC
Q 005554 492 VGEPVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 492 ~~~~v~lvGhS~GG~ial~~A~~~ 515 (691)
...++++.|||+||.+|..++...
T Consensus 126 p~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 126 PDYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred CCceEEEEccCHHHHHHHHHHHHH
Confidence 446799999999999999988753
No 216
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.26 E-value=1.7 Score=39.05 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCE-EEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhH
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNR-VWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGG 505 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~-Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG 505 (691)
...||+.-|+|..+.....++ ...++. ++++|+..... +++... .+.+.||++|||-
T Consensus 11 d~LIvyFaGwgtpps~v~HLi---lpeN~dl~lcYDY~dl~l------dfDfsA-------------y~hirlvAwSMGV 68 (214)
T COG2830 11 DHLIVYFAGWGTPPSAVNHLI---LPENHDLLLCYDYQDLNL------DFDFSA-------------YRHIRLVAWSMGV 68 (214)
T ss_pred CEEEEEEecCCCCHHHHhhcc---CCCCCcEEEEeehhhcCc------ccchhh-------------hhhhhhhhhhHHH
Confidence 347888889998877665544 223454 57888864421 122111 1457899999999
Q ss_pred HHHHHHHHhCccccceEEEecCCCCCC
Q 005554 506 YFVAIVACLWPAVVKSVVLINSAGNVI 532 (691)
Q Consensus 506 ~ial~~A~~~P~~V~~lVll~~~~~~~ 532 (691)
.+|-++..-.+ +++.+.+++.+.+-
T Consensus 69 wvAeR~lqg~~--lksatAiNGTgLpc 93 (214)
T COG2830 69 WVAERVLQGIR--LKSATAINGTGLPC 93 (214)
T ss_pred HHHHHHHhhcc--ccceeeecCCCCCc
Confidence 99999887765 78888888876543
No 217
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=93.23 E-value=0.24 Score=46.29 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhCC-----cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCC
Q 005554 477 ELMWSELLRDFTVEVVG-----EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNV 531 (691)
Q Consensus 477 ~~~~a~dl~~ll~~l~~-----~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~ 531 (691)
-+.-+..|..+++.|.. ..+.++|||+|+.++-..+...+..+..+|++++++..
T Consensus 87 A~~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~g 146 (177)
T PF06259_consen 87 ARAGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGMG 146 (177)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCCCC
Confidence 44556677777766532 46899999999999999888767789999999987654
No 218
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=2.3 Score=44.14 Aligned_cols=235 Identities=11% Similarity=0.052 Sum_probs=120.5
Q ss_pred CCeEEEEcCCCCChHHH-HHHHHHHhcCCCEEEEeCCCCCcCCCCCC-cCCCHHHHHHHHHHHHHHhC--CcCEEEEEeC
Q 005554 427 GPAILLVHGFGAFLEHY-RDNIYDIADGGNRVWAITLLGFGRSEKPN-IVYTELMWSELLRDFTVEVV--GEPVHLIGNS 502 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~-~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-~~~s~~~~a~dl~~ll~~l~--~~~v~lvGhS 502 (691)
..+|+++=||.+..+-+ ........+.||.++.+-.|-+-..-... ...+.....+-+.+++...+ ..++++--.|
T Consensus 38 ~k~Iv~~~gWag~~~r~l~ky~~~Yq~~g~~~~~~tap~~~~~~~~s~~~~sl~~~~~~l~~L~~~~~~~~~pi~fh~FS 117 (350)
T KOG2521|consen 38 EKPIVVLLGWAGAIDRNLMKYSKIYQDKGYIVVRITAPCPSVFLSASRRILSLSLASTRLSELLSDYNSDPCPIIFHVFS 117 (350)
T ss_pred cccEEEEeeeccccchhHHHHHHHHhcCCceEEEecCcccccccccccccchhhHHHHHHHHHhhhccCCcCceEEEEec
Confidence 43666666666654443 34556666779999998877654333222 34566666778888887766 3567777899
Q ss_pred hhHHHHHHHH---H-hC-c---cccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHHHHHhhcC
Q 005554 503 IGGYFVAIVA---C-LW-P---AVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISNFVKQCYP 574 (691)
Q Consensus 503 ~GG~ial~~A---~-~~-P---~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (691)
+||...+..- . ++ | +.+.+++..+.+....+-....+..... .... ....+....+.
T Consensus 118 ~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~~~~~~~~a~~~~~-------~~~~--------~~~~~~~~~~~ 182 (350)
T KOG2521|consen 118 GNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARSSPVQLGWAVSFSS-------PPDD--------YVARWARLNYH 182 (350)
T ss_pred CCceeehHHHHHHHhhcCchhHhhcCCceEeccccccchhhhcceecccc-------Cchh--------hHHHHHhcCeE
Confidence 9998776533 1 12 2 3466677777665433221111110000 0000 00000110000
Q ss_pred CCC--cccc---HHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHh--
Q 005554 575 TRR--ERAD---DWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEH-- 647 (691)
Q Consensus 575 ~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~-- 647 (691)
... .... .......+... .......+-.. ....-.....+.+.+.+..|.++|.+...+..+..
T Consensus 183 i~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~r--------~~~~~~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~ 253 (350)
T KOG2521|consen 183 ITLLTMAGNEGGAYLLGPLAEKI-SMSRKYHFLDR--------YEEQRNELPWNQLYLYSDNDDVLPADEIEKFIALRRE 253 (350)
T ss_pred EEEEEeeecccchhhhhhhhhcc-ccccchHHHHH--------HHhhhhcccccceeecCCccccccHHHHHHHHHHHHh
Confidence 000 0000 00000000000 00000000000 01111223568889999999999998655553332
Q ss_pred -CCCcEEEEe-CCCCCCCccC-hHHHHHHHHHHHHhhhCCC
Q 005554 648 -CAGIVIREL-DAGHCPHDEK-PEEVNSIISEWIVTIESKV 685 (691)
Q Consensus 648 -~~~~~~~~~-~~GH~~~~e~-pe~v~~~I~~fL~~~~~~~ 685 (691)
.-+.+.+-. ++-|..+... |..+.+...+|++......
T Consensus 254 ~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~~~ 294 (350)
T KOG2521|consen 254 KGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVISSY 294 (350)
T ss_pred cCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhccccc
Confidence 223333333 8899888765 9999999999999876543
No 219
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=92.98 E-value=0.92 Score=44.26 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=64.3
Q ss_pred EEEEcCCCCCcCCHHHHHHHhCCCeEEEEEECCcc-cc--cCChhHHHHHHHHHHHHHHHHHhcCCcEEEEEC-------
Q 005554 48 VIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRI-LS--RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFG------- 117 (691)
Q Consensus 48 l~W~r~dlRl~DN~aL~~A~~~~~~~~~f~~~~~~-~~--~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g------- 117 (691)
|.|+=-|-=..++++|.. ... -..|+.+.... .. .+-..+..+++-+++.+.+.|++.|..+..+.-
T Consensus 1 L~lIlgdQL~~~~~~l~~-~~~--~~~v~mvE~~~~~~~~~~HkqKl~l~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~ 77 (224)
T PF04244_consen 1 LRLILGDQLFEDHPALRD-DPA--DDRVLMVEVPEEFTYVPHHKQKLVLFFSAMRHFADELRAKGFRVHYIELDDPENTQ 77 (224)
T ss_dssp EEE--TT---TT-HHHHT--TT--T-EEEEE--HHHHHSS---HHHHHHHHHHHHHHHHHHHHTT--EEEE-TT-TT--S
T ss_pred CeEeccCCCCCccccccc-CCC--CCEEEEEEchHHhCcCcccHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCccccc
Confidence 455556666778888866 222 22444444332 22 235678899999999999999999999888753
Q ss_pred ChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcceecc
Q 005554 118 RVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDI 178 (691)
Q Consensus 118 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l~~~ 178 (691)
+-.+.|.+++++++++.|.+-. |.+..-.+.+.+.+.+.|| ++..+.+..++-.
T Consensus 78 s~~~~L~~~~~~~~~~~~~~~~---P~d~~l~~~l~~~~~~~~i----~~~~~~~~~Fl~s 131 (224)
T PF04244_consen 78 SFEDALARALKQHGIDRLHVME---PGDYRLEQRLESLAQQLGI----PLEVLEDPHFLTS 131 (224)
T ss_dssp SHHHHHHHHHHHH----EEEE-----S-HHHHHHHHH----SSS-----EEEE--TTSSS-
T ss_pred cHHHHHHHHHHHcCCCEEEEEC---CCCHHHHHHHHhhhcccCC----ceEEeCCCCccCC
Confidence 3467888999999999999864 4555555667777777776 7777766655444
No 220
>PLN02162 triacylglycerol lipase
Probab=92.61 E-value=0.29 Score=52.21 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHh---C-----ccccceEEEecCC
Q 005554 477 ELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACL---W-----PAVVKSVVLINSA 528 (691)
Q Consensus 477 ~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~---~-----P~~V~~lVll~~~ 528 (691)
..++.+.+.+++......++++.|||+||.+|..+|+. + .+++.+++..+.+
T Consensus 261 y~~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa~L~~~~~~~l~~~~~~vYTFGqP 320 (475)
T PLN02162 261 YYTIRQMLRDKLARNKNLKYILTGHSLGGALAALFPAILAIHGEDELLDKLEGIYTFGQP 320 (475)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHHHHHHccccccccccceEEEeCCC
Confidence 34455566666666666789999999999999997652 1 1234456666654
No 221
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=92.44 E-value=0.39 Score=48.10 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=33.3
Q ss_pred cCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCC
Q 005554 494 EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 494 ~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~ 530 (691)
..-+|+|-|+||.+++..+..||+++-.++..+|...
T Consensus 177 ~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~ 213 (299)
T COG2382 177 DGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFW 213 (299)
T ss_pred CCcEEeccccccHHHHHHHhcCchhhceeeccCCccc
Confidence 4578999999999999999999999999999988754
No 222
>PLN00413 triacylglycerol lipase
Probab=92.26 E-value=0.36 Score=51.68 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHh---C-----ccccceEEEecCC
Q 005554 478 LMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACL---W-----PAVVKSVVLINSA 528 (691)
Q Consensus 478 ~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~---~-----P~~V~~lVll~~~ 528 (691)
.++.+.+..+++.....++++.|||+||.+|..+|.. + ..++.+++..+++
T Consensus 268 y~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~~L~~~~~~~~~~ri~~VYTFG~P 326 (479)
T PLN00413 268 YTILRHLKEIFDQNPTSKFILSGHSLGGALAILFTAVLIMHDEEEMLERLEGVYTFGQP 326 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHHHHHhccchhhccccceEEEeCCC
Confidence 3556677777777766789999999999999998853 1 1234566666654
No 223
>PLN02454 triacylglycerol lipase
Probab=91.14 E-value=0.35 Score=51.16 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCcC--EEEEEeChhHHHHHHHHHh
Q 005554 481 SELLRDFTVEVVGEP--VHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 481 a~dl~~ll~~l~~~~--v~lvGhS~GG~ial~~A~~ 514 (691)
...|..+++.....+ +++.|||+||.+|+.+|..
T Consensus 213 l~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 213 LAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 334444454444444 8999999999999998864
No 224
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=91.12 E-value=0.29 Score=51.00 Aligned_cols=85 Identities=15% Similarity=0.201 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCC-ChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC---cCCCHHHHHHHHHHHHHHhCCcCEEEEEeC
Q 005554 427 GPAILLVHGFGA-FLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN---IVYTELMWSELLRDFTVEVVGEPVHLIGNS 502 (691)
Q Consensus 427 ~p~VlliHG~~~-~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~---~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS 502 (691)
+-.|+++||+-+ +...|...+...... +.=..+..+|+-...... ..+=-+..++++.+.+....+.++..+|||
T Consensus 80 ~HLvVlthGi~~~~~~~~~~~~~~~~kk-~p~~~iv~~g~~~~~~~T~~Gv~~lG~Rla~~~~e~~~~~si~kISfvghS 158 (405)
T KOG4372|consen 80 KHLVVLTHGLHGADMEYWKEKIEQMTKK-MPDKLIVVRGKMNNMCQTFDGVDVLGERLAEEVKETLYDYSIEKISFVGHS 158 (405)
T ss_pred ceEEEeccccccccHHHHHHHHHhhhcC-CCcceEeeeccccchhhccccceeeecccHHHHhhhhhccccceeeeeeee
Confidence 458999999866 678888877777664 221133333332222111 111112234445555444556899999999
Q ss_pred hhHHHHHHHH
Q 005554 503 IGGYFVAIVA 512 (691)
Q Consensus 503 ~GG~ial~~A 512 (691)
+||.++..+.
T Consensus 159 LGGLvar~AI 168 (405)
T KOG4372|consen 159 LGGLVARYAI 168 (405)
T ss_pred cCCeeeeEEE
Confidence 9998876543
No 225
>PLN02571 triacylglycerol lipase
Probab=90.97 E-value=0.33 Score=51.34 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCc--CEEEEEeChhHHHHHHHHHh
Q 005554 478 LMWSELLRDFTVEVVGE--PVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 478 ~~~a~dl~~ll~~l~~~--~v~lvGhS~GG~ial~~A~~ 514 (691)
+++.++|..+++..... ++++.|||+||.+|+..|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 44566777777665443 68999999999999998864
No 226
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=90.30 E-value=0.92 Score=48.76 Aligned_cols=102 Identities=18% Similarity=0.078 Sum_probs=67.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHH----H----hcC----------CCEEEEeC-CCCCcCCCC--CCcCCCHHHHHHHHH
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYD----I----ADG----------GNRVWAIT-LLGFGRSEK--PNIVYTELMWSELLR 485 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~----L----~~~----------G~~Vi~~D-~~G~G~S~~--~~~~~s~~~~a~dl~ 485 (691)
.|.++.+.|.++++..|..+.+. + ... .-.++.+| .-|.|.|.. ....-+.....+|+.
T Consensus 101 rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~adLvFiDqPvGTGfS~a~~~e~~~d~~~~~~D~~ 180 (498)
T COG2939 101 RPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFADLVFIDQPVGTGFSRALGDEKKKDFEGAGKDVY 180 (498)
T ss_pred CceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccCCceEEEecCcccCcccccccccccchhccchhHH
Confidence 68899999999998887655321 0 000 12588899 669999874 233334444445555
Q ss_pred HHHH-------HhCC--cCEEEEEeChhHHHHHHHHHhCcc---ccceEEEecCC
Q 005554 486 DFTV-------EVVG--EPVHLIGNSIGGYFVAIVACLWPA---VVKSVVLINSA 528 (691)
Q Consensus 486 ~ll~-------~l~~--~~v~lvGhS~GG~ial~~A~~~P~---~V~~lVll~~~ 528 (691)
.+.+ +... .+.+|+|-|+||.-+..+|..--+ ..+++|++++.
T Consensus 181 ~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssv 235 (498)
T COG2939 181 SFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSV 235 (498)
T ss_pred HHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeee
Confidence 4443 3333 489999999999999988876443 35677766664
No 227
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=90.10 E-value=0.69 Score=43.59 Aligned_cols=74 Identities=14% Similarity=0.007 Sum_probs=41.9
Q ss_pred CEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHH----HHhCCcCEEEEEeChhHHHHHHHHHh------CccccceEEE
Q 005554 455 NRVWAITLLGFGRSEKPNIVYTELMWSELLRDFT----VEVVGEPVHLIGNSIGGYFVAIVACL------WPAVVKSVVL 524 (691)
Q Consensus 455 ~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll----~~l~~~~v~lvGhS~GG~ial~~A~~------~P~~V~~lVl 524 (691)
..+..+++|-..... ....+...=++.+...+ ..-...+++|+|+|.|+.++..++.. ..++|.++|+
T Consensus 40 ~~~~~V~YpA~~~~~--~y~~S~~~G~~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvl 117 (179)
T PF01083_consen 40 VAVQGVEYPASLGPN--SYGDSVAAGVANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVL 117 (179)
T ss_dssp EEEEE--S---SCGG--SCHHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEE
T ss_pred eEEEecCCCCCCCcc--cccccHHHHHHHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEE
Confidence 556666766433211 11112333333333333 33344689999999999999999877 2357999999
Q ss_pred ecCCCC
Q 005554 525 INSAGN 530 (691)
Q Consensus 525 l~~~~~ 530 (691)
++-+..
T Consensus 118 fGdP~~ 123 (179)
T PF01083_consen 118 FGDPRR 123 (179)
T ss_dssp ES-TTT
T ss_pred ecCCcc
Confidence 987533
No 228
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=89.84 E-value=0.66 Score=44.33 Aligned_cols=68 Identities=10% Similarity=-0.069 Sum_probs=45.7
Q ss_pred HHHHhcCCCEEEEeCCCCCcCCCC-----C----CcCCCHHHHHHHHHHHHHHhCC-cCEEEEEeChhHHHHHHHHHhC
Q 005554 447 IYDIADGGNRVWAITLLGFGRSEK-----P----NIVYTELMWSELLRDFTVEVVG-EPVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 447 ~~~L~~~G~~Vi~~D~~G~G~S~~-----~----~~~~s~~~~a~dl~~ll~~l~~-~~v~lvGhS~GG~ial~~A~~~ 515 (691)
+..+... .+|+++=+|-...... . .......|..+....+|++.+. .+++|+|||.|+.+.+++...+
T Consensus 39 as~F~~~-~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 39 ASAFNGV-CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hhhhhcC-CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 3445444 6888887664322111 1 1234566677777777888754 6899999999999999998764
No 229
>PLN02408 phospholipase A1
Probab=89.52 E-value=0.53 Score=49.13 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCc--CEEEEEeChhHHHHHHHHHhC
Q 005554 480 WSELLRDFTVEVVGE--PVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 480 ~a~dl~~ll~~l~~~--~v~lvGhS~GG~ial~~A~~~ 515 (691)
..+.|..+++..... ++++.|||+||.+|..+|...
T Consensus 184 Vl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl 221 (365)
T PLN02408 184 VREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDI 221 (365)
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHH
Confidence 345566666665543 489999999999999988653
No 230
>PLN02934 triacylglycerol lipase
Probab=88.24 E-value=0.71 Score=49.89 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHH
Q 005554 477 ELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVAC 513 (691)
Q Consensus 477 ~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~ 513 (691)
.......+..+++.....++++.|||+||.+|..+|.
T Consensus 304 y~~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 304 YYAVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHH
Confidence 3446667777777776678999999999999999875
No 231
>PLN02310 triacylglycerol lipase
Probab=87.96 E-value=1.2 Score=47.10 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhC----CcCEEEEEeChhHHHHHHHHHh
Q 005554 478 LMWSELLRDFTVEVV----GEPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 478 ~~~a~dl~~ll~~l~----~~~v~lvGhS~GG~ial~~A~~ 514 (691)
+++.+.|..+++... ..++++.|||+||.+|+.+|..
T Consensus 189 ~qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 189 EQVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred HHHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHH
Confidence 344556666666553 1368999999999999998854
No 232
>PLN02324 triacylglycerol lipase
Probab=87.68 E-value=0.81 Score=48.43 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCC--cCEEEEEeChhHHHHHHHHHh
Q 005554 480 WSELLRDFTVEVVG--EPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 480 ~a~dl~~ll~~l~~--~~v~lvGhS~GG~ial~~A~~ 514 (691)
+.+.|..+++.... ..+++.|||+||.+|+..|..
T Consensus 199 Vl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 199 VQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 34456666666554 258999999999999998864
No 233
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=87.32 E-value=4.1 Score=42.85 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=62.7
Q ss_pred CHHHHHHHhC-------CCeEEEEEECCcccccCChhHHHHHHHHHHHHHHHHHh------cCCcEEEE--E--------
Q 005554 60 HLGLVAASKY-------QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKE------QGSDLMIR--F-------- 116 (691)
Q Consensus 60 N~aL~~A~~~-------~~~~~~f~~~~~~~~~~~~~~~~fl~~~l~~l~~~l~~------~g~~l~~~--~-------- 116 (691)
+.|+.+|++. ..|..+++.++.........-..---+-+.+..+.+++ .|++.... .
T Consensus 19 ~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~ 98 (357)
T PRK12652 19 RQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGP 98 (357)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCC
Confidence 4567666522 26788899886432111110001111234445554444 47764443 3
Q ss_pred CChHHHHHHHHHHhCCcEEEEccccChhHHH-HHHHHHHHHhhcCC
Q 005554 117 GRVENVIRELVEEVKATSVFAEEEVEYHLRQ-MMAIVDETLAKVSL 161 (691)
Q Consensus 117 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~-~~~~v~~~l~~~~i 161 (691)
|++.+.|.+.+++++++.|+.+.+|.|.... .-+-+...|.+.|+
T Consensus 99 G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 99 GDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQPLERELARAGI 144 (357)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccchHHHHHHhcCC
Confidence 8999999999999999999999999876433 33456666776665
No 234
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=87.06 E-value=3.8 Score=45.11 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=54.9
Q ss_pred HHHHhcCCCEEEEeCCCCCcCCCC---CCcCCCH-----------HHHHHHHHHHHHHh-C--CcCEEEEEeChhHHHHH
Q 005554 447 IYDIADGGNRVWAITLLGFGRSEK---PNIVYTE-----------LMWSELLRDFTVEV-V--GEPVHLIGNSIGGYFVA 509 (691)
Q Consensus 447 ~~~L~~~G~~Vi~~D~~G~G~S~~---~~~~~s~-----------~~~a~dl~~ll~~l-~--~~~v~lvGhS~GG~ial 509 (691)
...+ .+||.++.=|- ||..+.. .....+. ...+..-.++++.. + .+.-+..|.|.||.-++
T Consensus 53 ~~~~-~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl 130 (474)
T PF07519_consen 53 ATAL-ARGYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGL 130 (474)
T ss_pred chhh-hcCeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHH
Confidence 3344 45999999997 6765532 1111222 22222333334333 2 25578999999999999
Q ss_pred HHHHhCccccceEEEecCCCC
Q 005554 510 IVACLWPAVVKSVVLINSAGN 530 (691)
Q Consensus 510 ~~A~~~P~~V~~lVll~~~~~ 530 (691)
..|.+||+..++||.-+|+.+
T Consensus 131 ~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 131 MAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred HHHHhChhhcCeEEeCCchHH
Confidence 999999999999999998744
No 235
>PLN02802 triacylglycerol lipase
Probab=86.53 E-value=0.96 Score=48.90 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhCC--cCEEEEEeChhHHHHHHHHHh
Q 005554 479 MWSELLRDFTVEVVG--EPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 479 ~~a~dl~~ll~~l~~--~~v~lvGhS~GG~ial~~A~~ 514 (691)
++.+.|..+++.... ..+++.|||+||.+|+.+|..
T Consensus 313 qVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 313 SVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 344556666666543 258999999999999998865
No 236
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=86.39 E-value=1.6 Score=45.38 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=30.4
Q ss_pred CCcCEEEEEeChhHHHHHHHHHhCcc-----ccceEEEecCCC
Q 005554 492 VGEPVHLIGNSIGGYFVAIVACLWPA-----VVKSVVLINSAG 529 (691)
Q Consensus 492 ~~~~v~lvGhS~GG~ial~~A~~~P~-----~V~~lVll~~~~ 529 (691)
+..|+.|||||+|+.+...+...-.+ .|+.+++++.+.
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv 260 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPV 260 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCC
Confidence 55789999999999999887655433 489999998763
No 237
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=86.14 E-value=1.8 Score=48.88 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCC---ChHHH--HHHHHHHhcCCCEEEEeCCC----CCcCCC--CCCcCCCHHHHHHHHHHH---HHHhC
Q 005554 427 GPAILLVHGFGA---FLEHY--RDNIYDIADGGNRVWAITLL----GFGRSE--KPNIVYTELMWSELLRDF---TVEVV 492 (691)
Q Consensus 427 ~p~VlliHG~~~---~~~~~--~~~~~~L~~~G~~Vi~~D~~----G~G~S~--~~~~~~s~~~~a~dl~~l---l~~l~ 492 (691)
-|++|+|||.+. +...+ ......+..+..-|+.+.+| |+.... ...+.+.+.|+...+.-+ |...|
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~FG 191 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSFG 191 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 589999999753 22222 12222233334556666655 332221 224566666665544444 55556
Q ss_pred C--cCEEEEEeChhHHHHHHHHHh--CccccceEEEecCCC
Q 005554 493 G--EPVHLIGNSIGGYFVAIVACL--WPAVVKSVVLINSAG 529 (691)
Q Consensus 493 ~--~~v~lvGhS~GG~ial~~A~~--~P~~V~~lVll~~~~ 529 (691)
. +++.|+|||.||..+..+... ...++.++|.+++..
T Consensus 192 Gdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 192 GDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred CCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 5 569999999999998776653 124577777777753
No 238
>PLN02753 triacylglycerol lipase
Probab=85.34 E-value=1.2 Score=48.40 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhCC-----cCEEEEEeChhHHHHHHHHHh
Q 005554 479 MWSELLRDFTVEVVG-----EPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 479 ~~a~dl~~ll~~l~~-----~~v~lvGhS~GG~ial~~A~~ 514 (691)
++.+.|..+++.... .++++.|||+||.+|+.+|..
T Consensus 292 QVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 292 QILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 344556666665532 479999999999999998853
No 239
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=85.05 E-value=1.6 Score=33.05 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=18.6
Q ss_pred EEEEEcCeEEEEEEe--CC-------CCCeEEEEcCCCCChHHH
Q 005554 409 RIWRWNGYQIQYTVA--GK-------EGPAILLVHGFGAFLEHY 443 (691)
Q Consensus 409 ~~~~~~g~~i~y~~~--g~-------~~p~VlliHG~~~~~~~~ 443 (691)
...+-||+-|....- +. .+|+|+|.||+.+++..|
T Consensus 16 ~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 16 EVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp EEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGG
T ss_pred EEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHH
Confidence 344447776665433 22 268999999999999887
No 240
>PLN03037 lipase class 3 family protein; Provisional
Probab=84.72 E-value=1.3 Score=47.94 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCC----cCEEEEEeChhHHHHHHHHHh
Q 005554 479 MWSELLRDFTVEVVG----EPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 479 ~~a~dl~~ll~~l~~----~~v~lvGhS~GG~ial~~A~~ 514 (691)
+..++|..+++.+.. .++++.|||+||.+|+..|..
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 345666777765532 358999999999999998854
No 241
>PLN02761 lipase class 3 family protein
Probab=84.41 E-value=1.4 Score=47.82 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhC----C--cCEEEEEeChhHHHHHHHHHh
Q 005554 479 MWSELLRDFTVEVV----G--EPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 479 ~~a~dl~~ll~~l~----~--~~v~lvGhS~GG~ial~~A~~ 514 (691)
++.+.|..+++... . -++++.|||+||.+|+..|..
T Consensus 273 qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~D 314 (527)
T PLN02761 273 QVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAYD 314 (527)
T ss_pred HHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHHH
Confidence 34556666666552 1 359999999999999988853
No 242
>PLN02719 triacylglycerol lipase
Probab=84.07 E-value=1.4 Score=47.62 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCC-----cCEEEEEeChhHHHHHHHHHh
Q 005554 480 WSELLRDFTVEVVG-----EPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 480 ~a~dl~~ll~~l~~-----~~v~lvGhS~GG~ial~~A~~ 514 (691)
+.+.|..+++.... .++++.|||+||.+|+.+|..
T Consensus 279 Vl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 279 VLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred HHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHH
Confidence 44555566655532 368999999999999998854
No 243
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.06 E-value=0.43 Score=52.46 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=47.1
Q ss_pred hhhhcccchhhhhhHHhhhccccccccCCCCCCcccccCCcceeccCCCeeecCchHHHHHHHHH
Q 005554 240 WTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAY 304 (691)
Q Consensus 240 ~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~f 304 (691)
|..+||++|+++|++|++ ..+..|..+||.|... .+|.+|+.+..|+..+++.+.+.
T Consensus 221 ~~~gGe~aA~~~L~~F~~-~~l~~Y~~~Rn~p~~~-------~tS~LSPyL~~G~IS~R~i~~~~ 277 (454)
T TIGR00591 221 WAKPGTTAGLIMLESFIE-KRLCFFRTRRNDPNND-------ALSMLSPWLHFGQLSAQRAARAV 277 (454)
T ss_pred CCCCcHHHHHHHHHHHHH-HHHHHHHHhcCCcccc-------cccccchHHhcCcccHHHHHHHH
Confidence 546799999999999997 4788899999987653 67888888888888888877775
No 244
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=84.04 E-value=0.37 Score=51.74 Aligned_cols=57 Identities=16% Similarity=0.056 Sum_probs=41.7
Q ss_pred hhcccchhhhhhHHhhhccccccccCCCCCCcccccCCcceeccCCCeeecCchHHHHHHHHHHHhhcCCCCCchHHHHH
Q 005554 242 LINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQE 321 (691)
Q Consensus 242 ~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~ 321 (691)
.+||++|+.+|++|+.+. +.+|..+||+|+.+ .+| +|+.||.+|+.+....|.+.+.
T Consensus 197 ~~Ge~aA~~~l~~F~~~~-l~~Y~~~Rd~p~~~-------~TS---------------~LSpyL~~G~IS~r~v~~~~~~ 253 (461)
T COG0415 197 TGGEKAALARLQDFLAEG-LDDYERTRDFPALD-------GTS---------------RLSPYLAFGVISPREVYAALLA 253 (461)
T ss_pred CchHHHHHHHHHHHHHHH-HHHHHHhcCCcccc-------ccc---------------ccCHHHHcCCcCHHHHHHHHHH
Confidence 459999999999999744 89999999988765 333 5556666665555556666654
No 245
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=81.23 E-value=9.3 Score=37.21 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=59.2
Q ss_pred HHHHHHHhCCCeEEEEEECCcccccCChhHHHHHHHHHHHHHHHHHhcCCcEEEEE--CC---hHHHHHHHHHHhCCcEE
Q 005554 61 LGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRF--GR---VENVIRELVEEVKATSV 135 (691)
Q Consensus 61 ~aL~~A~~~~~~~~~f~~~~~~~~~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~--g~---~~~~l~~l~~~~~~~~v 135 (691)
-||+.|.+...|..++..-|.... +..|=...+..++.+.+.+|+||+... |. -.+.+.+.+++.++++|
T Consensus 15 lAl~~~~~~~~V~~L~~~~~~~~~-----s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~v 89 (222)
T TIGR00289 15 LALYKALEEHEVISLVGVFSENEE-----SYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEAL 89 (222)
T ss_pred HHHHHHHHcCeeEEEEEEcCCCCC-----ccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEE
Confidence 467777655457777777665321 121222356667777788899998764 33 33445455567799999
Q ss_pred EEccccChhHHHHHHHHHHHH
Q 005554 136 FAEEEVEYHLRQMMAIVDETL 156 (691)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~l 156 (691)
++-.-...+.+.|.+++.+.+
T Consensus 90 v~GdI~s~~qr~~~e~vc~~~ 110 (222)
T TIGR00289 90 CIGAIESNYQKSRIDKVCREL 110 (222)
T ss_pred EECccccHHHHHHHHHHHHHc
Confidence 998888888888776665544
No 246
>PLN02847 triacylglycerol lipase
Probab=81.00 E-value=2.5 Score=46.61 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=19.7
Q ss_pred hCCcCEEEEEeChhHHHHHHHHHh
Q 005554 491 VVGEPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 491 l~~~~v~lvGhS~GG~ial~~A~~ 514 (691)
...-+++++|||+||.+|..++..
T Consensus 248 ~PdYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 248 YPDFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CCCCeEEEeccChHHHHHHHHHHH
Confidence 333479999999999999998765
No 247
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=79.41 E-value=26 Score=31.23 Aligned_cols=83 Identities=17% Similarity=0.013 Sum_probs=51.2
Q ss_pred cCCHHHHHHHhC-----CCeEEEEEECCcccccC--C-----h----hHHHHHHHHHHHHHHHHHhcCCc--EEEEEC-C
Q 005554 58 DDHLGLVAASKY-----QAVVPLYVFDHRILSRY--S-----N----EMLELVIFALEDLRKSLKEQGSD--LMIRFG-R 118 (691)
Q Consensus 58 ~DN~aL~~A~~~-----~~~~~~f~~~~~~~~~~--~-----~----~~~~fl~~~l~~l~~~l~~~g~~--l~~~~g-~ 118 (691)
.-..||.+|++. .++..+++.++...... + . ....-..+-|.+..+.+++.|+. ..+..| +
T Consensus 11 ~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~ 90 (146)
T cd01989 11 KSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQCEDVVLEDDD 90 (146)
T ss_pred ccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEeCCc
Confidence 345677777643 37888999876432111 0 0 00112233444455555555654 455565 8
Q ss_pred hHHHHHHHHHHhCCcEEEEccc
Q 005554 119 VENVIRELVEEVKATSVFAEEE 140 (691)
Q Consensus 119 ~~~~l~~l~~~~~~~~v~~~~~ 140 (691)
+.+.|.+.+++++++.|++-..
T Consensus 91 ~~~~I~~~a~~~~~dlIV~Gs~ 112 (146)
T cd01989 91 VAKAIVEYVADHGITKLVMGAS 112 (146)
T ss_pred HHHHHHHHHHHcCCCEEEEecc
Confidence 9999999999999999998755
No 248
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=79.13 E-value=2.8 Score=43.94 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHh
Q 005554 478 LMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 478 ~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~ 514 (691)
..+.+++..+++....-.+.+-|||+||.+|..+|..
T Consensus 155 ~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 155 SGLDAELRRLIELYPNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHH
Confidence 5677888888888887779999999999999998864
No 249
>PRK09982 universal stress protein UspD; Provisional
Probab=78.70 E-value=18 Score=32.30 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=51.1
Q ss_pred CHHHHHHHhC-----CCeEEEEEECCccc--cc-C--C-hh----HHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHH
Q 005554 60 HLGLVAASKY-----QAVVPLYVFDHRIL--SR-Y--S-NE----MLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIR 124 (691)
Q Consensus 60 N~aL~~A~~~-----~~~~~~f~~~~~~~--~~-~--~-~~----~~~fl~~~l~~l~~~l~~~g~~l~~~~g~~~~~l~ 124 (691)
..||.+|++. ..+..++++++... .. . . .. ......+.|.++.+++...++...+..|+|.+.|.
T Consensus 17 ~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~G~p~~~I~ 96 (142)
T PRK09982 17 ALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLL 96 (142)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEecCHHHHHH
Confidence 4677777522 46888889875321 00 0 0 01 11122233444444444445677888999999999
Q ss_pred HHHHHhCCcEEEEccc
Q 005554 125 ELVEEVKATSVFAEEE 140 (691)
Q Consensus 125 ~l~~~~~~~~v~~~~~ 140 (691)
+.+++.+++-|+.-..
T Consensus 97 ~~A~~~~aDLIVmG~~ 112 (142)
T PRK09982 97 EIMQKEQCDLLVCGHH 112 (142)
T ss_pred HHHHHcCCCEEEEeCC
Confidence 9999999999998754
No 250
>PRK15456 universal stress protein UspG; Provisional
Probab=77.97 E-value=12 Score=33.45 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=49.5
Q ss_pred CHHHHHHHhC----CCeEEEEEECCcccccC----C------hhHHHHHHHHHHHHHHHHHhcCC--cEEEEECChHHHH
Q 005554 60 HLGLVAASKY----QAVVPLYVFDHRILSRY----S------NEMLELVIFALEDLRKSLKEQGS--DLMIRFGRVENVI 123 (691)
Q Consensus 60 N~aL~~A~~~----~~~~~~f~~~~~~~~~~----~------~~~~~fl~~~l~~l~~~l~~~g~--~l~~~~g~~~~~l 123 (691)
..||.+|.+. ..+..++++++...... . .....-..+.|.++.+.+...|. ..++..|++.+.|
T Consensus 18 ~~al~~A~~la~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~v~~G~~~~~I 97 (142)
T PRK15456 18 DKAVRHAEFLAQDDGVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEV 97 (142)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCcceEEEEcCCChHHHH
Confidence 3566666532 46778888876421100 0 01112222345555554443343 5667789999999
Q ss_pred HHHHHHhCCcEEEEccc
Q 005554 124 RELVEEVKATSVFAEEE 140 (691)
Q Consensus 124 ~~l~~~~~~~~v~~~~~ 140 (691)
.+++++++++-|++-..
T Consensus 98 ~~~a~~~~~DLIVmG~~ 114 (142)
T PRK15456 98 NELAEELGADVVVIGSR 114 (142)
T ss_pred HHHHhhcCCCEEEEcCC
Confidence 99999999999998654
No 251
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=76.92 E-value=23 Score=34.48 Aligned_cols=90 Identities=12% Similarity=0.047 Sum_probs=57.4
Q ss_pred CHHHHHHHhCCCeEEEEEECCcccccCChhHHHHHHH--HHHHHHHHHHhcCCcEEEEE-----CChHHHHHHHHHHhCC
Q 005554 60 HLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIF--ALEDLRKSLKEQGSDLMIRF-----GRVENVIRELVEEVKA 132 (691)
Q Consensus 60 N~aL~~A~~~~~~~~~f~~~~~~~~~~~~~~~~fl~~--~l~~l~~~l~~~g~~l~~~~-----g~~~~~l~~l~~~~~~ 132 (691)
+-||+.|.+...|+.+..+-|.... + ++.+ .+.-++.+-+.+|+||+... ++-.+.+.++.++.++
T Consensus 14 ~~al~~a~~~~~v~~L~t~~~~~~~-----s--~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv 86 (223)
T TIGR00290 14 CLALYHALKEHEVISLVNIMPENEE-----S--YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDV 86 (223)
T ss_pred HHHHHHHHHhCeeEEEEEEecCCCC-----c--ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCC
Confidence 3578888765446666665554311 1 2222 34445556677899987643 3355566666777799
Q ss_pred cEEEEccccChhHHHHHHHHHHHH
Q 005554 133 TSVFAEEEVEYHLRQMMAIVDETL 156 (691)
Q Consensus 133 ~~v~~~~~~~~~~~~~~~~v~~~l 156 (691)
+.|++-.-...+.+.|.+++.+.+
T Consensus 87 ~~vv~GdI~s~~qr~~~e~v~~~l 110 (223)
T TIGR00290 87 EAVVFGAIYSEYQKTRIERVCREL 110 (223)
T ss_pred CEEEECCcccHHHHHHHHHHHHhc
Confidence 999998888888887776665544
No 252
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=75.40 E-value=1.3e+02 Score=32.81 Aligned_cols=109 Identities=13% Similarity=0.042 Sum_probs=65.2
Q ss_pred EcCeEEEEE-EeCCC-CCeEEEEcCCCC--ChHHHHHHHHHHhcCCCEE-EEeCCCCCcCCCCCC-cCCCHHHHHHHHHH
Q 005554 413 WNGYQIQYT-VAGKE-GPAILLVHGFGA--FLEHYRDNIYDIADGGNRV-WAITLLGFGRSEKPN-IVYTELMWSELLRD 486 (691)
Q Consensus 413 ~~g~~i~y~-~~g~~-~p~VlliHG~~~--~~~~~~~~~~~L~~~G~~V-i~~D~~G~G~S~~~~-~~~s~~~~a~dl~~ 486 (691)
-.+.++.|+ ..|.= .|..|..-|+-. ..+.| .+++.| |... +.-|.|=-|.+--.. ..+ -+.+.+.|.+
T Consensus 273 ~~reEi~yYFnPGD~KPPL~VYFSGyR~aEGFEgy-~MMk~L---g~PfLL~~DpRleGGaFYlGs~ey-E~~I~~~I~~ 347 (511)
T TIGR03712 273 SKRQEFIYYFNPGDFKPPLNVYFSGYRPAEGFEGY-FMMKRL---GAPFLLIGDPRLEGGAFYLGSDEY-EQGIINVIQE 347 (511)
T ss_pred CCCCeeEEecCCcCCCCCeEEeeccCcccCcchhH-HHHHhc---CCCeEEeeccccccceeeeCcHHH-HHHHHHHHHH
Confidence 345555554 44532 456788888743 22222 355555 3333 444777666553322 112 3345666677
Q ss_pred HHHHhCC--cCEEEEEeChhHHHHHHHHHhCccccceEEEecCC
Q 005554 487 FTVEVVG--EPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 487 ll~~l~~--~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
-++.|+. ..++|-|-|||..-|+.++++.. -.++|+--|.
T Consensus 348 ~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKPL 389 (511)
T TIGR03712 348 KLDYLGFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKPL 389 (511)
T ss_pred HHHHhCCCHHHeeeccccccchhhhhhcccCC--CceEEEcCcc
Confidence 7788887 45999999999999999998753 2356654443
No 253
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=74.61 E-value=18 Score=37.32 Aligned_cols=160 Identities=11% Similarity=0.056 Sum_probs=83.4
Q ss_pred HHHhCCcCEEEEEeChhHHHHHHHHHhCccccceEEEecCCCCCCCchhhhhhhhhhhcCChhhhhhHHHHHHHHhhHHH
Q 005554 488 TVEVVGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLINSAGNVIPEYSFLQFSNERQASGPIRLGAQLLLFYLRLNISN 567 (691)
Q Consensus 488 l~~l~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (691)
+..+.++.+.+-|-|--|..+...|.-.| +|.++|-+..-.. .....+..
T Consensus 228 L~q~~Ik~F~VTGaSKRgWttwLTAIaDp-rv~aIvp~v~D~L-----------------------------ni~a~L~h 277 (507)
T COG4287 228 LEQVEIKGFMVTGASKRGWTTWLTAIADP-RVFAIVPFVYDNL-----------------------------NIEAQLLH 277 (507)
T ss_pred hhheeeeeEEEeccccchHHHHHHHhcCc-chhhhhhhHHhhc-----------------------------ccHHHHHH
Confidence 44456677888899988888888887777 4666553322100 00011111
Q ss_pred HHHhhcCCCCccccHHHHHHHHHhcCCcchHHHHHHHhccccCcchHhhhcCCCCcEEEEEeCCCCCCChhHHHHHHHHh
Q 005554 568 FVKQCYPTRRERADDWLISEMLRASYDPGVLVVLESIFSFKLSLPLNYLLEGFKEKVLIIQGIKDPISDSKSKVAMFKEH 647 (691)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~vp~~~~~~~~~~~ 647 (691)
....+..+.+..+.....+.+......+.+.+........ ... .......+..|-.++.|..|.+..++. ..++-..
T Consensus 278 iyrsYGgnwpi~l~pyyaegi~erl~tp~fkqL~~IiDPl-ay~-~try~~RLalpKyivnaSgDdff~pDs-a~lYyd~ 354 (507)
T COG4287 278 IYRSYGGNWPIKLAPYYAEGIDERLETPLFKQLLEIIDPL-AYR-NTRYQLRLALPKYIVNASGDDFFVPDS-ANLYYDD 354 (507)
T ss_pred HHHhhCCCCCcccchhHhhhHHHhhcCHHHHHHHHhhcHH-HHh-hhhhhhhccccceeecccCCcccCCCc-cceeecc
Confidence 1122222333333333333333333333222222111100 000 001234678899999999999998884 5666666
Q ss_pred CCCcE-EEEe-CCCCCCCccChHHHHHHHHHHHHhhhC
Q 005554 648 CAGIV-IREL-DAGHCPHDEKPEEVNSIISEWIVTIES 683 (691)
Q Consensus 648 ~~~~~-~~~~-~~GH~~~~e~pe~v~~~I~~fL~~~~~ 683 (691)
+|+.+ +.+. +..|...-. .+.+.+..|+...+.
T Consensus 355 LPG~kaLrmvPN~~H~~~n~---~i~esl~~flnrfq~ 389 (507)
T COG4287 355 LPGEKALRMVPNDPHNLINQ---FIKESLEPFLNRFQM 389 (507)
T ss_pred CCCceeeeeCCCCcchhhHH---HHHHHHHHHHHHHhc
Confidence 77766 4444 888876543 455556666665443
No 254
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=72.91 E-value=33 Score=29.54 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=51.8
Q ss_pred CCHHHHHHHh----C-CCeEEEEEECCcccccCChhHHHHHHHHHHHHHHHHHhcCCcEEEE-ECChHHHHHHHHHHhCC
Q 005554 59 DHLGLVAASK----Y-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIR-FGRVENVIRELVEEVKA 132 (691)
Q Consensus 59 DN~aL~~A~~----~-~~~~~~f~~~~~~~~~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~-~g~~~~~l~~l~~~~~~ 132 (691)
...+|..|+. . .++..+++.++... ....... +-|..+.+.+++.++...+. .|++.+.|.+.++++++
T Consensus 12 s~~al~~a~~la~~~~~~l~ll~v~~~~~~-~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~ 86 (124)
T cd01987 12 AERLIRRAARLADRLKAPWYVVYVETPRLN-RLSEAER----RRLAEALRLAEELGAEVVTLPGDDVAEAIVEFAREHNV 86 (124)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEecCccc-cCCHHHH----HHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHHcCC
Confidence 4456666642 2 47889999887542 1122222 33455555566677766554 46889999999999999
Q ss_pred cEEEEccccC
Q 005554 133 TSVFAEEEVE 142 (691)
Q Consensus 133 ~~v~~~~~~~ 142 (691)
+.|+.-..-.
T Consensus 87 dllviG~~~~ 96 (124)
T cd01987 87 TQIVVGKSRR 96 (124)
T ss_pred CEEEeCCCCC
Confidence 9999876643
No 255
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=72.87 E-value=6.5 Score=37.00 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=42.0
Q ss_pred CCcEEEEEeCCCCCCChhHHHHHHHHhC---CC---cEEEEeCCCCCCCccC---hHHHHHHHHHHHHh
Q 005554 621 KEKVLIIQGIKDPISDSKSKVAMFKEHC---AG---IVIRELDAGHCPHDEK---PEEVNSIISEWIVT 680 (691)
Q Consensus 621 ~~PvLiI~G~~D~~vp~~~~~~~~~~~~---~~---~~~~~~~~GH~~~~e~---pe~v~~~I~~fL~~ 680 (691)
++++|-|-|+.|.++.+.. ......++ |. ......++||+..+.- .+++...|.+|+.+
T Consensus 134 ~taLlTVEGe~DDIsg~GQ-T~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQ-THAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred cceeEEeecCcccCCcchH-HHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 4678889999999999873 33344443 22 2233349999887764 48999999999975
No 256
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=72.67 E-value=23 Score=29.62 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCc-CCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHH--HHHHHHHhCc
Q 005554 440 LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNI-VYTELMWSELLRDFTVEVVGEPVHLIGNSIGGY--FVAIVACLWP 516 (691)
Q Consensus 440 ~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~-~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~--ial~~A~~~P 516 (691)
...|..+.+.+...||-.=.+.++..|.+....- .-..+.=...|..+++.....+++|||-|--.= +-..+|.++|
T Consensus 10 wnly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P 89 (100)
T PF09949_consen 10 WNLYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFP 89 (100)
T ss_pred HHHHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCC
Confidence 3344455566666677766677777765532211 111123456778888888889999999985543 3345778899
Q ss_pred cccceEEE
Q 005554 517 AVVKSVVL 524 (691)
Q Consensus 517 ~~V~~lVl 524 (691)
++|.++.+
T Consensus 90 ~~i~ai~I 97 (100)
T PF09949_consen 90 GRILAIYI 97 (100)
T ss_pred CCEEEEEE
Confidence 99998865
No 257
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=72.52 E-value=22 Score=33.96 Aligned_cols=91 Identities=20% Similarity=0.108 Sum_probs=54.5
Q ss_pred HHHHHHHhC-CCeEEEEEECCcccccCChhHHHHHHHHHHHHHHHHHhcCCcEEEEE--C---ChHHHHHHHHHHh---C
Q 005554 61 LGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRF--G---RVENVIRELVEEV---K 131 (691)
Q Consensus 61 ~aL~~A~~~-~~~~~~f~~~~~~~~~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~--g---~~~~~l~~l~~~~---~ 131 (691)
-+|+.|.+. ..|+++++..|..... ..|=...+..+++..+.+|+++.++. + +-.+.+.+.+++. +
T Consensus 14 ~al~~a~~~G~~v~~l~~~~~~~~~~-----~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g 88 (194)
T cd01994 14 YALYRALEEGHEVVALLNLTPEEGSS-----MMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEG 88 (194)
T ss_pred HHHHHHHHcCCEEEEEEEEecCCCCc-----ccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcC
Confidence 355666665 4688888876643211 10111256667777788899998875 2 2223333333222 5
Q ss_pred CcEEEEccccChhHHHHHHHHHHHH
Q 005554 132 ATSVFAEEEVEYHLRQMMAIVDETL 156 (691)
Q Consensus 132 ~~~v~~~~~~~~~~~~~~~~v~~~l 156 (691)
++.|++-.-...+.+.|.+++.+.+
T Consensus 89 ~~~vv~G~i~sd~~~~~~e~~~~~~ 113 (194)
T cd01994 89 VDAVVFGAILSEYQRTRVERVCERL 113 (194)
T ss_pred CCEEEECccccHHHHHHHHHHHHHc
Confidence 8888888777778888777665544
No 258
>PRK15005 universal stress protein F; Provisional
Probab=70.99 E-value=42 Score=29.76 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=48.9
Q ss_pred HHHHHHHh----C-CCeEEEEEECCcc-ccc--C-----Ch---hHHHHHHHHHHHHHHHHHhcCC--cEEEEECChHHH
Q 005554 61 LGLVAASK----Y-QAVVPLYVFDHRI-LSR--Y-----SN---EMLELVIFALEDLRKSLKEQGS--DLMIRFGRVENV 122 (691)
Q Consensus 61 ~aL~~A~~----~-~~~~~~f~~~~~~-~~~--~-----~~---~~~~fl~~~l~~l~~~l~~~g~--~l~~~~g~~~~~ 122 (691)
.||..|++ . .++..++++++.. ... . .. ....-..+.|.++.+.+...|. ...+..|++.+.
T Consensus 19 ~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~G~p~~~ 98 (144)
T PRK15005 19 RVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDR 98 (144)
T ss_pred HHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCHHHH
Confidence 56666642 2 4688888887521 100 0 01 0111122344444444444443 567788999999
Q ss_pred HHHHHHHhCCcEEEEccc
Q 005554 123 IRELVEEVKATSVFAEEE 140 (691)
Q Consensus 123 l~~l~~~~~~~~v~~~~~ 140 (691)
|.+.+++.+++-|+.-..
T Consensus 99 I~~~a~~~~~DLIV~Gs~ 116 (144)
T PRK15005 99 ILELAKKIPADMIIIASH 116 (144)
T ss_pred HHHHHHHcCCCEEEEeCC
Confidence 999999999999998654
No 259
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=70.52 E-value=2.2 Score=46.54 Aligned_cols=57 Identities=9% Similarity=-0.054 Sum_probs=38.8
Q ss_pred hhhcccchhhhhhHHhhhccccccccCCCCCCcccccCCcceeccCCCeeecCchHHHHHHHH
Q 005554 241 TLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQA 303 (691)
Q Consensus 241 ~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~ 303 (691)
..+||.+|+++|++|++...+..|...||.+... ..+|.+|+.+.-|...+++.+.+
T Consensus 207 ~~gGe~~A~~~L~~Fl~~~~l~~Y~~~R~~~~~~------~~tS~LSpyL~~G~iS~r~v~~~ 263 (429)
T TIGR02765 207 FVGGETAGLARLKEYFWSKDLKSYKETRNGMLGP------DYSTKFSPWLALGCVSPRQIYEE 263 (429)
T ss_pred cCchHHHHHHHHHHHHhhccHhhhhhccCcccCC------CCcCccCHHHhCCcccHHHHHHH
Confidence 3459999999999999766777888888774211 13555666666666665555444
No 260
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=67.56 E-value=22 Score=34.77 Aligned_cols=75 Identities=21% Similarity=0.112 Sum_probs=43.9
Q ss_pred CCEEEEeCCCCC-cC-C--CCCCcCCCHHHHHHHHHHHHHHh--CCcCEEEEEeChhHHHHHHHHHhCc-----c-ccce
Q 005554 454 GNRVWAITLLGF-GR-S--EKPNIVYTELMWSELLRDFTVEV--VGEPVHLIGNSIGGYFVAIVACLWP-----A-VVKS 521 (691)
Q Consensus 454 G~~Vi~~D~~G~-G~-S--~~~~~~~s~~~~a~dl~~ll~~l--~~~~v~lvGhS~GG~ial~~A~~~P-----~-~V~~ 521 (691)
|+.+..+++|.. +- + .....+.+..+=++.+.+.+... ..++++++|+|+|+.++...+.+.- . ..-.
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~ 81 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLS 81 (225)
T ss_pred CcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceE
Confidence 567777887762 10 0 11122334555555555555542 3378999999999999988766531 1 1334
Q ss_pred EEEecCC
Q 005554 522 VVLINSA 528 (691)
Q Consensus 522 lVll~~~ 528 (691)
+|+++-+
T Consensus 82 fVl~gnP 88 (225)
T PF08237_consen 82 FVLIGNP 88 (225)
T ss_pred EEEecCC
Confidence 6666544
No 261
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=66.03 E-value=61 Score=27.45 Aligned_cols=71 Identities=27% Similarity=0.255 Sum_probs=47.9
Q ss_pred CCeEEEEEECCccccc--CChhHHHHHHHHHHHHHHHHHhcCCcE--EEEECChHHHHHHHHHHhCCcEEEEccc
Q 005554 70 QAVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDL--MIRFGRVENVIRELVEEVKATSVFAEEE 140 (691)
Q Consensus 70 ~~~~~~f~~~~~~~~~--~~~~~~~fl~~~l~~l~~~l~~~g~~l--~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 140 (691)
.++..+++.++..... .......-..+.|.++...+...|+++ .+..|++.+.+.+.+++.+++.|+....
T Consensus 28 ~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~ 102 (130)
T cd00293 28 AELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSR 102 (130)
T ss_pred CEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCC
Confidence 4788899987643210 001122233466677766666667765 4457888999999999999999998754
No 262
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=65.73 E-value=2.6 Score=19.59 Aligned_cols=7 Identities=71% Similarity=1.341 Sum_probs=5.9
Q ss_pred ccccccc
Q 005554 2 ALISFPR 8 (691)
Q Consensus 2 ~~~~~~~ 8 (691)
.||+|||
T Consensus 4 GlI~fpR 10 (11)
T PF08259_consen 4 GLIPFPR 10 (11)
T ss_pred cccccCC
Confidence 5899998
No 263
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=64.71 E-value=3.5 Score=45.48 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=41.4
Q ss_pred hhcccchhhhhhHHhhhccccccccCCCCCCcccccCCcceeccCCCeeecCchHHHHHHHHH
Q 005554 242 LINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAY 304 (691)
Q Consensus 242 ~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~f 304 (691)
.+||.+|+++|++|+++ .+..|..+||.++.. .+|.+|+.+.-|...+++.+.+-
T Consensus 205 ~gGe~~A~~~L~~f~~~-~l~~Y~~~r~~p~~~-------~tS~LSpyL~~G~iS~r~v~~~~ 259 (471)
T TIGR03556 205 EPGETAAQARLEEFCDR-AIADYQEQRNFPALD-------GTSQLSPALKFGVIGIRTVWQAT 259 (471)
T ss_pred CCcHHHHHHHHHHHHHH-HHHHhhhccCCCCCC-------CCCCCChhhcCCcccHHHHHHHH
Confidence 35999999999999974 688888888886532 46677777777777776655553
No 264
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.39 E-value=11 Score=41.58 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCC---cCEEEEEeChhHHHHHHHHHh-----Ccc------ccceEEEecCC
Q 005554 481 SELLRDFTVEVVG---EPVHLIGNSIGGYFVAIVACL-----WPA------VVKSVVLINSA 528 (691)
Q Consensus 481 a~dl~~ll~~l~~---~~v~lvGhS~GG~ial~~A~~-----~P~------~V~~lVll~~~ 528 (691)
.+.+.+.++..+. .+++.|||||||.++-.+... .|+ ...|+|+++.+
T Consensus 510 s~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~P 571 (697)
T KOG2029|consen 510 SNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVP 571 (697)
T ss_pred HHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecC
Confidence 3344444444433 679999999999888665432 233 35678888765
No 265
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=64.39 E-value=3.8 Score=45.35 Aligned_cols=56 Identities=9% Similarity=-0.073 Sum_probs=43.6
Q ss_pred hhhcccchhhhhhHHhhhccccccccCCCCCCcccccCCcceeccCCCeeecCchHHHHHHHHH
Q 005554 241 TLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAY 304 (691)
Q Consensus 241 ~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~f 304 (691)
.++||++|+++|++|+++ .+..|..++|.++.. .+|.+|+.+.-|....++.+.+-
T Consensus 199 ~~gGe~~A~~~L~~Fl~~-~~~~Y~~~Rd~p~~~-------~tS~LSPyL~~G~ISpR~v~~~~ 254 (475)
T TIGR02766 199 WSPGWSNADKALTEFING-PLLEYSKNRKKADSA-------TTSLLSPYLHFGEVSVRKVFHLV 254 (475)
T ss_pred CCCccHHHHHHHHHHHHH-HHHHHhhcCCCCCCC-------CCCCCCcccccCcccHHHHHHHH
Confidence 456999999999999973 567888888887532 67788888888888887766654
No 266
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite.; InterPro: IPR005101 This entry represents a multi-helical domain composed of two all-alpha subdomains that is found as the C-terminal domain in cryptochrome proteins, as well as at the N-terminal of DNA photolyase where it acts as a FAD-binding domain (the N-terminal of DNA photolyase binds a light-harvesting cofactor). Photolyases and cryptochromes are related flavoproteins that bind FAD. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes (CRY1 and CRY2) are blue light photoreceptors that mediate blue light-induced gene expression [, ]. DNA photolyases are DNA repair enzymes that repair mismatched pyrimidine dimers induced by exposure to ultra-violet light. They bind to UV-damaged DNA containing pyrimidine dimers and, upon absorbing a near-UV photon (300 to 500 nm), they catalyse dimer splitting, breaking the cyclobutane ring joining the two pyrimidines of the dimer so as to split them into the constituent monomers; this process is called photoreactivation. DNA photolyases require two choromophore-cofactors for their activity. All monomers contain a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm [, ].; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 3ZXS_A 1DNP_A 2XRZ_B 2XRY_A 2VTB_A 2J4D_B 2IJG_X 3TVS_A 2E0I_D ....
Probab=62.54 E-value=2.1 Score=43.47 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=37.6
Q ss_pred hcccchhhhhhHHhhhccccccccCCCCCCcccccCCcceeccCCCeeecCchHHHHHHHHHHHhhcCCCCCchHHHHHH
Q 005554 243 INNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEK 322 (691)
Q Consensus 243 ~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~ 322 (691)
+||++|+.+|++|++ ..+..|...+|.|+.. .+ .+|+.||.+|+.+....|.+..+.
T Consensus 1 GGe~~A~~~L~~Fl~-~~l~~Y~~~r~~p~~~-------~~---------------S~LSpyL~~G~lS~r~v~~~~~~~ 57 (277)
T PF03441_consen 1 GGETAALKRLEEFLK-ERLADYGEQRDDPAAD-------GT---------------SRLSPYLNFGCLSPREVYRAVKKA 57 (277)
T ss_dssp SSHHHHHHHHHHHHH-HCGGGHHHHTT-TTST-------TS------------------HHHHHTTSS-HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-HHHHhhchhccCCCcC-------Cc---------------CcccHHHhCCCcCHHHHHHHHHHH
Confidence 489999999999997 6677888888886332 22 467777777666666666665544
No 267
>PRK10116 universal stress protein UspC; Provisional
Probab=62.17 E-value=1.1e+02 Score=26.87 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=49.7
Q ss_pred cCCHHHHHHHhC-----CCeEEEEEECCcccc-cCC-----hhHHHHHHHHHHHHHHHHHhcCCc---EEEEECChHHHH
Q 005554 58 DDHLGLVAASKY-----QAVVPLYVFDHRILS-RYS-----NEMLELVIFALEDLRKSLKEQGSD---LMIRFGRVENVI 123 (691)
Q Consensus 58 ~DN~aL~~A~~~-----~~~~~~f~~~~~~~~-~~~-----~~~~~fl~~~l~~l~~~l~~~g~~---l~~~~g~~~~~l 123 (691)
..+.+|..|+.. ..+..++++++.... ... ..+....-+..+.|++...+.|++ .++..|++.+.+
T Consensus 15 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~~~~~I 94 (142)
T PRK10116 15 ESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDADYPIEKTFIAYGELSEHI 94 (142)
T ss_pred chHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCCHHHHH
Confidence 446888888632 367778887653110 111 111111112222333333455653 455689999999
Q ss_pred HHHHHHhCCcEEEEcccc
Q 005554 124 RELVEEVKATSVFAEEEV 141 (691)
Q Consensus 124 ~~l~~~~~~~~v~~~~~~ 141 (691)
.+.+++.+++-|+....-
T Consensus 95 ~~~a~~~~~DLiV~g~~~ 112 (142)
T PRK10116 95 LEVCRKHHFDLVICGNHN 112 (142)
T ss_pred HHHHHHhCCCEEEEcCCc
Confidence 999999999999986553
No 268
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=61.51 E-value=16 Score=36.33 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=24.2
Q ss_pred HHHHHHhCCcCEEEEEeChhHHHHHHHHHhCc
Q 005554 485 RDFTVEVVGEPVHLIGNSIGGYFVAIVACLWP 516 (691)
Q Consensus 485 ~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P 516 (691)
..+.+.....++.|-|||+||.+|..+..++-
T Consensus 267 ~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T COG5153 267 GAVRRIYPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred HHHHHhCCCceEEEeccccchHHHHHhccccC
Confidence 33344444567899999999999999988764
No 269
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=61.51 E-value=16 Score=36.33 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=24.2
Q ss_pred HHHHHHhCCcCEEEEEeChhHHHHHHHHHhCc
Q 005554 485 RDFTVEVVGEPVHLIGNSIGGYFVAIVACLWP 516 (691)
Q Consensus 485 ~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P 516 (691)
..+.+.....++.|-|||+||.+|..+..++-
T Consensus 267 ~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T KOG4540|consen 267 GAVRRIYPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred HHHHHhCCCceEEEeccccchHHHHHhccccC
Confidence 33344444567899999999999999988764
No 270
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=60.81 E-value=12 Score=36.26 Aligned_cols=88 Identities=18% Similarity=0.120 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCeEEEEEECCcccccCChhHHHHHHHH--HHHHHHHHHhcCCcEEEEE-----CChHHHHHHHHHHhCCc
Q 005554 61 LGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFA--LEDLRKSLKEQGSDLMIRF-----GRVENVIRELVEEVKAT 133 (691)
Q Consensus 61 ~aL~~A~~~~~~~~~f~~~~~~~~~~~~~~~~fl~~~--l~~l~~~l~~~g~~l~~~~-----g~~~~~l~~l~~~~~~~ 133 (691)
-||+.|.+..+|..+..+-|..... ++.++ +.-++.+-+.+|+||+... ++-.+.+.+.+++.+++
T Consensus 15 lAl~~a~~~~~v~~L~t~~~~~~~s-------~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~l~~~l~~~~v~ 87 (218)
T PF01902_consen 15 LALYRALRQHEVVCLLTMVPEEEDS-------YMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVEDLKEALKELKVE 87 (218)
T ss_dssp HHHHHHHHT-EEEEEEEEEESTTT--------SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHHHHHHHCTC--S
T ss_pred HHHHHHHHhCCccEEEEeccCCCCc-------ccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHHHHHHHHHcCCC
Confidence 4788887665566666555533211 11111 3334444566799998763 44456677777888999
Q ss_pred EEEEccccChhHHHHHHHHHHH
Q 005554 134 SVFAEEEVEYHLRQMMAIVDET 155 (691)
Q Consensus 134 ~v~~~~~~~~~~~~~~~~v~~~ 155 (691)
+|++-.-...+.+.|.+++.+.
T Consensus 88 ~vv~GdI~~~~~r~~~e~vc~~ 109 (218)
T PF01902_consen 88 AVVFGDIDSEYQRNWVERVCER 109 (218)
T ss_dssp EEE--TTS-HHHHHHHHHHHHH
T ss_pred EEEECcCCcHHHHHHHHHHHHH
Confidence 9998877667777766655544
No 271
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=60.67 E-value=96 Score=26.64 Aligned_cols=83 Identities=13% Similarity=-0.005 Sum_probs=54.6
Q ss_pred CHHHHHHHh----C-CCeEEEEEECCcccccC--ChhHHHHHHHHHHHHHHHHHhcCCcEEEE---ECChHHHHHHHHHH
Q 005554 60 HLGLVAASK----Y-QAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKSLKEQGSDLMIR---FGRVENVIRELVEE 129 (691)
Q Consensus 60 N~aL~~A~~----~-~~~~~~f~~~~~~~~~~--~~~~~~fl~~~l~~l~~~l~~~g~~l~~~---~g~~~~~l~~l~~~ 129 (691)
..+|..|.. . .++..++++++...... ......-..+.+..+.+.+++.|++.... .|++.+.|.+++++
T Consensus 13 ~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~ 92 (132)
T cd01988 13 RDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRIDHDIASGILRTAKE 92 (132)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHh
Confidence 356666642 1 47888999886431110 11122334466777777777888875433 47899999999999
Q ss_pred hCCcEEEEccccC
Q 005554 130 VKATSVFAEEEVE 142 (691)
Q Consensus 130 ~~~~~v~~~~~~~ 142 (691)
++++-|++-..-.
T Consensus 93 ~~~dlIV~G~~~~ 105 (132)
T cd01988 93 RQADLIIMGWHGS 105 (132)
T ss_pred cCCCEEEEecCCC
Confidence 9999999876643
No 272
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=60.56 E-value=4.5 Score=44.60 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=41.3
Q ss_pred hhcccchhhhhhHHhhhccccccccCCCCCCcccccCCcceeccCCCeeecCchHHHHHHHHH
Q 005554 242 LINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAY 304 (691)
Q Consensus 242 ~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~f 304 (691)
.+||++|+++|++|+++ .+..|..++|.++.. .+|.+|+.+.-|...+++.+..-
T Consensus 202 ~gGe~~A~~~L~~f~~~-~l~~Y~~~r~~p~~~-------~tS~LSPyL~~G~iS~r~v~~~~ 256 (472)
T PRK10674 202 PVGEKAAIAQLRQFCQQ-GAGEYEQQRDFPAVD-------GTSRLSAYLATGVLSPRQCLHRL 256 (472)
T ss_pred CCCHHHHHHHHHHHHHH-HHHHhccccCCCCcc-------CCCCcChhhccCcCCHHHHHHHH
Confidence 45999999999999974 588888888876543 56677777777777766655543
No 273
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=58.36 E-value=33 Score=37.71 Aligned_cols=96 Identities=19% Similarity=0.089 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCC------ChHHHHH-HHHHHhcCCCEEEEeCCCCCcCCCCCCcCC--CHHHHHHHHHHHH---HHhCC-
Q 005554 427 GPAILLVHGFGA------FLEHYRD-NIYDIADGGNRVWAITLLGFGRSEKPNIVY--TELMWSELLRDFT---VEVVG- 493 (691)
Q Consensus 427 ~p~VlliHG~~~------~~~~~~~-~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~--s~~~~a~dl~~ll---~~l~~- 493 (691)
+-.|+-+||.|. +.+.|.. .+..| |..|+.+|+- -.|..++ ..++.--..--++ ..+|.
T Consensus 396 ~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL---~cPiiSVdYS-----LAPEaPFPRaleEv~fAYcW~inn~allG~T 467 (880)
T KOG4388|consen 396 RSLIVHCHGGGFVAQSSKSHEPYLRSWAQAL---GCPIISVDYS-----LAPEAPFPRALEEVFFAYCWAINNCALLGST 467 (880)
T ss_pred ceEEEEecCCceeeeccccccHHHHHHHHHh---CCCeEEeeec-----cCCCCCCCcHHHHHHHHHHHHhcCHHHhCcc
Confidence 336888999764 2344433 33333 7899999973 2222222 2332221111122 33444
Q ss_pred -cCEEEEEeChhHHHHHHHHHh----CccccceEEEecCCCC
Q 005554 494 -EPVHLIGNSIGGYFVAIVACL----WPAVVKSVVLINSAGN 530 (691)
Q Consensus 494 -~~v~lvGhS~GG~ial~~A~~----~P~~V~~lVll~~~~~ 530 (691)
++|+++|-|.||.+.+..|.+ .-..-+|+++.-++..
T Consensus 468 gEriv~aGDSAGgNL~~~VaLr~i~~gvRvPDGl~laY~ptl 509 (880)
T KOG4388|consen 468 GERIVLAGDSAGGNLCFTVALRAIAYGVRVPDGLMLAYPPTL 509 (880)
T ss_pred cceEEEeccCCCcceeehhHHHHHHhCCCCCCceEEecChhh
Confidence 789999999999876655543 2112358888776543
No 274
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=55.86 E-value=45 Score=32.03 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=52.1
Q ss_pred HHHHHhcCCC-EEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeCh----hHHHHHHHHHhCc-ccc
Q 005554 446 NIYDIADGGN-RVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSI----GGYFVAIVACLWP-AVV 519 (691)
Q Consensus 446 ~~~~L~~~G~-~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~----GG~ial~~A~~~P-~~V 519 (691)
....+...|. +|+..|.++.. .|+.+.+++.+.++++..+ -.++|+|+|. |..++-.+|++.- ..+
T Consensus 68 ~~~~l~~~G~d~V~~~~~~~~~-------~~~~e~~a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAarLga~lv 139 (202)
T cd01714 68 ALREALAMGADRAILVSDRAFA-------GADTLATAKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAELLGWPQI 139 (202)
T ss_pred HHHHHHHcCCCEEEEEeccccc-------CCChHHHHHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHHhCCCcc
Confidence 3444445565 78888765443 5678899999999998877 5799999998 8899999888742 245
Q ss_pred ceEEEec
Q 005554 520 KSVVLIN 526 (691)
Q Consensus 520 ~~lVll~ 526 (691)
..++-+.
T Consensus 140 sdv~~l~ 146 (202)
T cd01714 140 TYVSKIE 146 (202)
T ss_pred ceEEEEE
Confidence 5555543
No 275
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=55.70 E-value=70 Score=30.93 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=62.2
Q ss_pred CHHHHHHHhC-CCeEEEEEECCcccccCChhHHHHHHHHHHHHHHHHHhcCCcEEEEE--C---ChHHHHHHHHHHhCCc
Q 005554 60 HLGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRF--G---RVENVIRELVEEVKAT 133 (691)
Q Consensus 60 N~aL~~A~~~-~~~~~~f~~~~~~~~~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~--g---~~~~~l~~l~~~~~~~ 133 (691)
|-||+.|.+. -.|..+.++-|+.-+.+ -|=.-.+.-...+-+..|+++.... | +-.+.+.++.+..+++
T Consensus 14 ~~Al~~a~~~G~eV~~Ll~~~p~~~dS~-----m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d 88 (223)
T COG2102 14 FYALYLALEEGHEVVYLLTVKPENGDSY-----MFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVD 88 (223)
T ss_pred HHHHHHHHHcCCeeEEEEEEecCCCCee-----eeeccchHHHHHHHHhcCCceEEEecCccchhhHHHHHHHHHhCccc
Confidence 6789999977 57888888777543111 0111223333334456699987764 3 3456677778888999
Q ss_pred EEEEccccChhHHHHHHHHHHHHh
Q 005554 134 SVFAEEEVEYHLRQMMAIVDETLA 157 (691)
Q Consensus 134 ~v~~~~~~~~~~~~~~~~v~~~l~ 157 (691)
.|++-.-+..+.+.|-+.+.+.+.
T Consensus 89 ~iv~GaI~s~yqk~rve~lc~~lG 112 (223)
T COG2102 89 GIVAGAIASEYQKERVERLCEELG 112 (223)
T ss_pred EEEEchhhhHHHHHHHHHHHHHhC
Confidence 999999888999988777766553
No 276
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=55.36 E-value=28 Score=35.34 Aligned_cols=102 Identities=17% Similarity=0.048 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCCChH----HHHHHHH---HHhc------CCCEEEEeCCC-CCcCCCCCC---cCCCHHHHHHHHHHHHH
Q 005554 427 GPAILLVHGFGAFLE----HYRDNIY---DIAD------GGNRVWAITLL-GFGRSEKPN---IVYTELMWSELLRDFTV 489 (691)
Q Consensus 427 ~p~VlliHG~~~~~~----~~~~~~~---~L~~------~G~~Vi~~D~~-G~G~S~~~~---~~~s~~~~a~dl~~ll~ 489 (691)
.|..+.+.|.++.+. .|..+-+ .+.. +.-.++.+|-| |.|.|-... ..-+..+.+.|+..+++
T Consensus 31 ~pl~lwlqGgpGaSstG~GNFeE~GPl~~~~~~r~~TWlk~adllfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl~~llk 110 (414)
T KOG1283|consen 31 RPLALWLQGGPGASSTGFGNFEELGPLDLDGSPRDWTWLKDADLLFVDNPVGAGFSYVDGSSAYTTNNKQIALDLVELLK 110 (414)
T ss_pred CCeeEEecCCCCCCCcCccchhhcCCcccCCCcCCchhhhhccEEEecCCCcCceeeecCcccccccHHHHHHHHHHHHH
Confidence 677888888755432 2222111 0111 12467777755 888875432 23467788999999987
Q ss_pred Hh-------CCcCEEEEEeChhHHHHHHHHHhCcc---------ccceEEEecCC
Q 005554 490 EV-------VGEPVHLIGNSIGGYFVAIVACLWPA---------VVKSVVLINSA 528 (691)
Q Consensus 490 ~l-------~~~~v~lvGhS~GG~ial~~A~~~P~---------~V~~lVll~~~ 528 (691)
.+ ...|++++..|.||-++..++...-+ ...+++|=++.
T Consensus 111 ~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSW 165 (414)
T KOG1283|consen 111 GFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSW 165 (414)
T ss_pred HHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcc
Confidence 65 33689999999999999988764322 35566666654
No 277
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=53.33 E-value=2e+02 Score=30.75 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=61.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCC------------------------CHHHHHHH
Q 005554 428 PAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVY------------------------TELMWSEL 483 (691)
Q Consensus 428 p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~------------------------s~~~~a~d 483 (691)
|+|+++--+-.=.+.+..+-+.+.+.|..|+.+|.-=.|.+..+. +. .++.+++-
T Consensus 2 ~tI~iigT~DTK~~E~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~-di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~g 80 (403)
T PF06792_consen 2 KTIAIIGTLDTKGEELLYLRDQIEAQGVEVLLIDVGTLGEPSFPP-DISREEVARAAGDSIEAVRSSGDRGEAIEAMARG 80 (403)
T ss_pred CEEEEEEccCCCHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCC-CcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHH
Confidence 345544333333567777888888899999999974444332211 11 12333444
Q ss_pred HHHHHHHhC----CcCEEEEEeChhHHHHHHHHHhCccccceEEEec
Q 005554 484 LRDFTVEVV----GEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLIN 526 (691)
Q Consensus 484 l~~ll~~l~----~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~ 526 (691)
+..++..+. ++-++-+|-|.|..++.......|--+-++++--
T Consensus 81 a~~~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVST 127 (403)
T PF06792_consen 81 AARFVSDLYDEGKIDGVIGIGGSGGTALATAAMRALPIGFPKLMVST 127 (403)
T ss_pred HHHHHHHHHhcCCccEEEEecCCccHHHHHHHHHhCCCCCCeEEEEc
Confidence 444444442 3557888999999999999988887677766543
No 278
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=49.08 E-value=74 Score=30.26 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcE--EEEccccChhHHHHHHHHHHHHh
Q 005554 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS--VFAEEEVEYHLRQMMAIVDETLA 157 (691)
Q Consensus 96 ~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~--v~~~~~~~~~~~~~~~~v~~~l~ 157 (691)
....++=++|++.|+++.++.||.......++++.++.. |+......|... .-..+.+.|+
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k-~~~~~i~~l~ 192 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPK-IFLRIIKELQ 192 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHH-HHHHHHHHHT
T ss_pred hhhhhhhhhhhccCcceeeeeccccccccccccccccccccccccccccccch-hHHHHHHHHh
Confidence 456666677788899999999999999999999999955 333331133333 2244555565
No 279
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=48.54 E-value=1.5e+02 Score=26.24 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=30.2
Q ss_pred HHHHHHhcCCcE---EEEECChHHHHHHHHHHhCCcEEEEccc
Q 005554 101 LRKSLKEQGSDL---MIRFGRVENVIRELVEEVKATSVFAEEE 140 (691)
Q Consensus 101 l~~~l~~~g~~l---~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 140 (691)
|++.+++.|+.. ++..|++.+.|.+.+++.+++-|+....
T Consensus 70 l~~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~ 112 (144)
T PRK15118 70 LTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHH 112 (144)
T ss_pred HHHHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCc
Confidence 444345556653 3457999999999999999999998655
No 280
>PRK10490 sensor protein KdpD; Provisional
Probab=48.45 E-value=1.1e+02 Score=36.94 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCeEEEEEECCcccccCChhHHHHHHHHHHHHHHHHHhcCCcEEEEEC-ChHHHHHHHHHHhCCcEEEEccccChh
Q 005554 70 QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFG-RVENVIRELVEEVKATSVFAEEEVEYH 144 (691)
Q Consensus 70 ~~~~~~f~~~~~~~~~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g-~~~~~l~~l~~~~~~~~v~~~~~~~~~ 144 (691)
.++.++||-++.. ...+.....-+.+.++ |.++ +|.......| +..+.|.+++++.+++.|+.-+.-...
T Consensus 279 a~~~~l~V~~~~~-~~~~~~~~~~l~~~~~-lA~~---lGa~~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~ 349 (895)
T PRK10490 279 SVWHAVYVETPRL-HRLPEKKRRAILSALR-LAQE---LGAETATLSDPAEEKAVLRYAREHNLGKIIIGRRASRR 349 (895)
T ss_pred CCEEEEEEecCCc-CcCCHHHHHHHHHHHH-HHHH---cCCEEEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCC
Confidence 4899999987743 2223333333445552 5544 4988777776 788999999999999999999876543
No 281
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=47.61 E-value=1e+02 Score=26.31 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=27.7
Q ss_pred CcEEEEECChHHHHHHHHHHhCCcEEEEcccc
Q 005554 110 SDLMIRFGRVENVIRELVEEVKATSVFAEEEV 141 (691)
Q Consensus 110 ~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~ 141 (691)
....+..|++.+.+.+++++.+++.|++...-
T Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~ 112 (140)
T PF00582_consen 81 IEVVIESGDVADAIIEFAEEHNADLIVMGSRG 112 (140)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCSEEEEESSS
T ss_pred eEEEEEeeccchhhhhccccccceeEEEeccC
Confidence 34566689999999999999999999988776
No 282
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.20 E-value=48 Score=36.01 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=31.3
Q ss_pred HhCCcCEEEEEeChhHHHHHHHHHh-----CccccceEEEecCCCC
Q 005554 490 EVVGEPVHLIGNSIGGYFVAIVACL-----WPAVVKSVVLINSAGN 530 (691)
Q Consensus 490 ~l~~~~v~lvGhS~GG~ial~~A~~-----~P~~V~~lVll~~~~~ 530 (691)
.+|..|+.|||+|+|+-+...+... .-..|..+|+++.+..
T Consensus 443 ~qG~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~ 488 (633)
T KOG2385|consen 443 SQGNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVP 488 (633)
T ss_pred ccCCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCcc
Confidence 3466899999999999998866542 2246899999988643
No 283
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=43.39 E-value=2.1e+02 Score=27.79 Aligned_cols=92 Identities=14% Similarity=0.049 Sum_probs=49.5
Q ss_pred HHHHHHHhC-CCeEEEEEECCcccccCChhHHHHHHHHHHHHHHHHHhcCCcEEEEECC-----hHHHH----HHHHHHh
Q 005554 61 LGLVAASKY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGR-----VENVI----RELVEEV 130 (691)
Q Consensus 61 ~aL~~A~~~-~~~~~~f~~~~~~~~~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g~-----~~~~l----~~l~~~~ 130 (691)
-+|+.|.+. ..|++++.+.+....... |-...+..+++..+.+|+++.++.-+ ..+.+ .++.++
T Consensus 12 ~al~~a~~~G~~v~~l~~~~~~~~~~~~-----~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~- 85 (218)
T TIGR03679 12 YALYKALEEGHEVRCLITVVPENEESYM-----FHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKRE- 85 (218)
T ss_pred HHHHHHHHcCCEEEEEEEeccCCCCccc-----cCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHc-
Confidence 355666665 356666665553211100 00123555666667789999887533 22223 333333
Q ss_pred CCcEEEEccccChhHHHHHHHHHHHHhhcCC
Q 005554 131 KATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161 (691)
Q Consensus 131 ~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i 161 (691)
+++.|++-.-...+.+.|.+ +.+.+.|+
T Consensus 86 g~~~vv~G~i~sd~~~~~~e---~v~~~~gl 113 (218)
T TIGR03679 86 GVEGIVTGAIASRYQKSRIE---RICEELGL 113 (218)
T ss_pred CCCEEEECCcccHhHHHHHH---HHHHhCCC
Confidence 89998887666666555555 44454444
No 284
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=41.60 E-value=1.7e+02 Score=25.63 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCc---EEEEECCh-HHHHHHHHHHhCCcEEEEccc
Q 005554 95 IFALEDLRKSLKEQGSD---LMIRFGRV-ENVIRELVEEVKATSVFAEEE 140 (691)
Q Consensus 95 ~~~l~~l~~~l~~~g~~---l~~~~g~~-~~~l~~l~~~~~~~~v~~~~~ 140 (691)
.+.+..+++.+.+.|+. ..+..|++ .+.+...+.+.+++.|+.-..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~ 122 (154)
T COG0589 73 EELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSR 122 (154)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCC
Confidence 56788888888888865 56678999 699999999999999998765
No 285
>PF03283 PAE: Pectinacetylesterase
Probab=41.36 E-value=79 Score=33.46 Aligned_cols=47 Identities=30% Similarity=0.331 Sum_probs=29.4
Q ss_pred HHHHHHHHH-hC-CcCEEEEEeChhHHHHHHHH----HhCccccceEEEecCC
Q 005554 482 ELLRDFTVE-VV-GEPVHLIGNSIGGYFVAIVA----CLWPAVVKSVVLINSA 528 (691)
Q Consensus 482 ~dl~~ll~~-l~-~~~v~lvGhS~GG~ial~~A----~~~P~~V~~lVll~~~ 528 (691)
..|..++.. +. .++++|.|.|.||.-++..+ ...|..++-..+.+++
T Consensus 142 avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG 194 (361)
T PF03283_consen 142 AVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDSG 194 (361)
T ss_pred HHHHHHHHhcCcccceEEEeccChHHHHHHHHHHHHHHHhccCceEEEecccc
Confidence 344444444 32 26799999999999888754 3456545555555554
No 286
>PRK12467 peptide synthase; Provisional
Probab=41.24 E-value=85 Score=44.79 Aligned_cols=97 Identities=18% Similarity=0.076 Sum_probs=66.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhC-CcCEEEEEeChhH
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVV-GEPVHLIGNSIGG 505 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~-~~~v~lvGhS~GG 505 (691)
-+.|++.|...++...+..+...|.. +..++.+..++.-.... ...+++.++....+.+.... ..+..+.|+|+||
T Consensus 3692 ~~~l~~~h~~~r~~~~~~~l~~~l~~-~~~~~~l~~~~~~~d~~--~~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g~ 3768 (3956)
T PRK12467 3692 FPALFCRHEGLGTVFDYEPLAVILEG-DRHVLGLTCRHLLDDGW--QDTSLQAMAVQYADYILWQQAKGPYGLLGWSLGG 3768 (3956)
T ss_pred ccceeeechhhcchhhhHHHHHHhCC-CCcEEEEeccccccccC--CccchHHHHHHHHHHHHHhccCCCeeeeeeecch
Confidence 45699999988887777777777765 47888887765532221 23356666666666665443 3579999999999
Q ss_pred HHHHHHHHh---CccccceEEEec
Q 005554 506 YFVAIVACL---WPAVVKSVVLIN 526 (691)
Q Consensus 506 ~ial~~A~~---~P~~V~~lVll~ 526 (691)
.++..++.. .-+.+.-+.+++
T Consensus 3769 ~~a~~~~~~l~~~g~~~~~~~~~~ 3792 (3956)
T PRK12467 3769 TLARLVAELLEREGESEAFLGLFD 3792 (3956)
T ss_pred HHHHHHHHHHHHcCCceeEEEEEe
Confidence 999988764 234455555554
No 287
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=38.69 E-value=40 Score=32.69 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcEEEEccc
Q 005554 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEE 140 (691)
Q Consensus 96 ~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 140 (691)
....+|-+.|++.|....|+.|.+...+..++++.+++.++.|.-
T Consensus 80 ~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l 124 (212)
T COG0560 80 PGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANEL 124 (212)
T ss_pred ccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEE
Confidence 348889999999999999999999999999999999998887754
No 288
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=36.88 E-value=1e+02 Score=32.96 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEE--CChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCC
Q 005554 96 FALEDLRKSLKEQGSDLMIRF--GRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161 (691)
Q Consensus 96 ~~l~~l~~~l~~~g~~l~~~~--g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i 161 (691)
+=|..+.+++.++|+..++.. .|..+.+.+++++.+++.|+-.+.....+.. +.+.|++.|+
T Consensus 65 ~~l~~~~~~v~~~Gg~vy~A~~aedA~~ii~~iv~~k~~k~vVKsKSmvseEIg----ln~~Le~~G~ 128 (459)
T COG1139 65 EYLEQLEENVTRNGGHVYFAKDAEDAREIIGEIVGEKNGKKVVKSKSMVSEEIG----LNHYLEEKGI 128 (459)
T ss_pred HHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHHHHhhccCcEEEEecchhHHHhh----hHHHHHHcCC
Confidence 445667788888999999985 4677889999999999999999998777665 5666777776
No 289
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=36.37 E-value=1.6e+02 Score=28.18 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=38.3
Q ss_pred CCeEEEEcCCCCChHHHHH-HHHHHhcCCC-EEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEE
Q 005554 427 GPAILLVHGFGAFLEHYRD-NIYDIADGGN-RVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLI 499 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~-~~~~L~~~G~-~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lv 499 (691)
..+|+++||...++..... +-..|.++|| .|+....-|+- ..+++.+-++..+.+.++|+
T Consensus 138 e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP-------------~~d~vi~~l~~~~~~~v~L~ 199 (265)
T COG4822 138 EILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYP-------------LVDTVIEYLRKNGIKEVHLI 199 (265)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCC-------------cHHHHHHHHHHcCCceEEEe
Confidence 4589999998776554434 4445667788 66665554442 14566666777777776664
No 290
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=36.05 E-value=39 Score=34.55 Aligned_cols=30 Identities=27% Similarity=0.235 Sum_probs=24.0
Q ss_pred HHHHHHHhCCcCEEEEEeChhHHHHHHHHH
Q 005554 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVAC 513 (691)
Q Consensus 484 l~~ll~~l~~~~v~lvGhS~GG~ial~~A~ 513 (691)
+.+++...|+++-.++|||+|-..|+.++.
T Consensus 72 ~~~~l~~~Gi~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 72 LARLWRSWGVRPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred HHHHHHHcCCcccEEEecCHHHHHHHHHhC
Confidence 334567788899999999999988887664
No 291
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=35.62 E-value=81 Score=29.87 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcEEEEc
Q 005554 94 VIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138 (691)
Q Consensus 94 l~~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~ 138 (691)
+..+..++=+.+++.|.++.|..+.+...+..+++..+++.++.+
T Consensus 88 ~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~ 132 (202)
T TIGR01490 88 LYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGT 132 (202)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEec
Confidence 455677777778889999999999999999999999999887765
No 292
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=35.35 E-value=46 Score=34.32 Aligned_cols=33 Identities=21% Similarity=-0.008 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhC
Q 005554 483 LLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 483 dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~ 515 (691)
-+...+++.++..-.++|.|+|+.++..+|..+
T Consensus 32 GvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 32 GVIKALEEAGIPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 445556666777778999999999999999874
No 293
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.76 E-value=1.7e+02 Score=24.15 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCcEEEE---ECChHHH--HHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEee
Q 005554 98 LEDLRKSLKEQGSDLMIR---FGRVENV--IRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLW 171 (691)
Q Consensus 98 l~~l~~~l~~~g~~l~~~---~g~~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~ 171 (691)
...+++.+++.|..+.+. .|..... |+...+ +++.|++-.++-....- ..+++.+++.++ +++...
T Consensus 12 ~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~--~aD~VIv~t~~vsH~~~--~~vk~~akk~~i----p~~~~~ 82 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIK--KADLVIVFTDYVSHNAM--WKVKKAAKKYGI----PIIYSR 82 (97)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcC--CCCEEEEEeCCcChHHH--HHHHHHHHHcCC----cEEEEC
Confidence 566778888899999888 3433333 666655 47888888887666544 356777777776 776664
No 294
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=34.74 E-value=53 Score=30.98 Aligned_cols=42 Identities=17% Similarity=0.429 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcE--EEEc
Q 005554 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS--VFAE 138 (691)
Q Consensus 97 ~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~--v~~~ 138 (691)
++++|-..|+++|..++++.|--...+.-.+.+.++.. +|.|
T Consensus 92 Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN 135 (227)
T KOG1615|consen 92 GIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYAN 135 (227)
T ss_pred CHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhh
Confidence 56777777777777777777777777766777766655 5544
No 295
>PRK02399 hypothetical protein; Provisional
Probab=34.43 E-value=6.1e+02 Score=27.20 Aligned_cols=96 Identities=17% Similarity=0.048 Sum_probs=59.2
Q ss_pred EEEcCCCCC-hHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCC-----------------------cCCCHHHHHHHHHH
Q 005554 431 LLVHGFGAF-LEHYRDNIYDIADGGNRVWAITLLGFGRSEKPN-----------------------IVYTELMWSELLRD 486 (691)
Q Consensus 431 lliHG~~~~-~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~-----------------------~~~s~~~~a~dl~~ 486 (691)
|++=|...+ .+.+..+-..+.+.|..|+.+|.-..|....+. ....++.+++-+..
T Consensus 6 I~iigT~DTK~~E~~yl~~~i~~~g~~v~~iDv~~~~~p~~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~~ 85 (406)
T PRK02399 6 IYIAGTLDTKGEELAYVKDLIEAAGLEVVTVDVSGLGEPPFEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAAA 85 (406)
T ss_pred EEEEeccCCcHHHHHHHHHHHHHCCCceEEEecCCCCCCCCCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHHH
Confidence 444455555 455666667777779999999984444221110 00112334444444
Q ss_pred HHHHh----CCcCEEEEEeChhHHHHHHHHHhCccccceEEEec
Q 005554 487 FTVEV----VGEPVHLIGNSIGGYFVAIVACLWPAVVKSVVLIN 526 (691)
Q Consensus 487 ll~~l----~~~~v~lvGhS~GG~ial~~A~~~P~~V~~lVll~ 526 (691)
++..+ .++-++-+|-|.|..++.......|--+-++++--
T Consensus 86 ~v~~L~~~g~i~gviglGGs~GT~lat~aMr~LPiG~PKlmVST 129 (406)
T PRK02399 86 FVRELYERGDVAGVIGLGGSGGTALATPAMRALPIGVPKLMVST 129 (406)
T ss_pred HHHHHHhcCCccEEEEecCcchHHHHHHHHHhCCCCCCeEEEEc
Confidence 54432 23557888999999999999988887676666543
No 296
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=34.31 E-value=3.8e+02 Score=31.45 Aligned_cols=93 Identities=16% Similarity=0.241 Sum_probs=61.9
Q ss_pred CCHHHHHHH-----hC-CCeEEEEEECCcccccCChhHHHHHHHHHHHHHHHHHhcCCcEEEEE-CChHHHHHHHHHHhC
Q 005554 59 DHLGLVAAS-----KY-QAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRF-GRVENVIRELVEEVK 131 (691)
Q Consensus 59 DN~aL~~A~-----~~-~~~~~~f~~~~~~~~~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~-g~~~~~l~~l~~~~~ 131 (691)
.|..|.... +. .+..+|||-.|+.... +.....- ++....|.++| |..+..+. ++..+.+.+.|++++
T Consensus 260 ~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~-~~~~~~~-l~~~~~Lae~l---Gae~~~l~~~dv~~~i~~ya~~~~ 334 (890)
T COG2205 260 GSEKLIRRAARLASRLHAKWTAVYVETPELHRL-SEKEARR-LHENLRLAEEL---GAEIVTLYGGDVAKAIARYAREHN 334 (890)
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEEeccccccc-cHHHHHH-HHHHHHHHHHh---CCeEEEEeCCcHHHHHHHHHHHcC
Confidence 466665442 22 5899999999987432 2222222 23445555555 99988887 577889999999999
Q ss_pred CcEEEEccccChhHHHH-HHHHHHHH
Q 005554 132 ATSVFAEEEVEYHLRQM-MAIVDETL 156 (691)
Q Consensus 132 ~~~v~~~~~~~~~~~~~-~~~v~~~l 156 (691)
++.|+.-+.....++.. ...+...|
T Consensus 335 ~TkiViG~~~~~rw~~~~~~~l~~~L 360 (890)
T COG2205 335 ATKIVIGRSRRSRWRRLFKGSLADRL 360 (890)
T ss_pred CeeEEeCCCcchHHHHHhcccHHHHH
Confidence 99999998877665544 23444444
No 297
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=34.12 E-value=27 Score=36.26 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=23.4
Q ss_pred HHHHHHHhCCcCEEEEEeChhHHHHHHHHH
Q 005554 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVAC 513 (691)
Q Consensus 484 l~~ll~~l~~~~v~lvGhS~GG~ial~~A~ 513 (691)
+.++++..|+++-.++|||+|=+.|+.++.
T Consensus 74 l~~~l~~~Gi~P~~v~GhSlGE~aA~~aaG 103 (318)
T PF00698_consen 74 LARLLRSWGIKPDAVIGHSLGEYAALVAAG 103 (318)
T ss_dssp HHHHHHHTTHCESEEEESTTHHHHHHHHTT
T ss_pred hhhhhcccccccceeeccchhhHHHHHHCC
Confidence 445567788899999999999887776554
No 298
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=33.69 E-value=1.1e+02 Score=35.42 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcce
Q 005554 98 LEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPF 175 (691)
Q Consensus 98 l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l 175 (691)
-++.=++|+++|+.++++.||....-..++++.++++|+.+--+ ..+- ++.+.|++.| ..+.+-++-+
T Consensus 542 a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~AellP--edK~---~~V~~l~~~g-----~~VamVGDGI 609 (713)
T COG2217 542 AKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELLP--EDKA---EIVRELQAEG-----RKVAMVGDGI 609 (713)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccCCc--HHHH---HHHHHHHhcC-----CEEEEEeCCc
Confidence 34444566888999999999999999999999999999988554 3332 3455566554 2344444444
No 299
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=33.64 E-value=46 Score=34.05 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=23.8
Q ss_pred HHHHHHHhCCcCEEEEEeChhHHHHHHHHH
Q 005554 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVAC 513 (691)
Q Consensus 484 l~~ll~~l~~~~v~lvGhS~GG~ial~~A~ 513 (691)
+.+++...++.+..++|||+|-..|+.++.
T Consensus 66 l~~~l~~~g~~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 66 AWRALLALLPRPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred HHHHHHhcCCCCcEEeecCHHHHHHHHHhC
Confidence 344556778889999999999988887764
No 300
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=33.44 E-value=1.6e+02 Score=34.15 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcce
Q 005554 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPF 175 (691)
Q Consensus 96 ~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l 175 (691)
...++.=++|++.|++..++.||....-..++++.|++.|+.+-. |..+. ++.+.+++.| .++..-++.+
T Consensus 448 ~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~--PedK~---~iV~~lQ~~G-----~~VaMtGDGv 517 (679)
T PRK01122 448 PGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEAT--PEDKL---ALIRQEQAEG-----RLVAMTGDGT 517 (679)
T ss_pred hhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCC--HHHHH---HHHHHHHHcC-----CeEEEECCCc
Confidence 345555667788899999999999999999999999999887643 33333 4555666665 3455555555
Q ss_pred ec
Q 005554 176 YD 177 (691)
Q Consensus 176 ~~ 177 (691)
.+
T Consensus 518 ND 519 (679)
T PRK01122 518 ND 519 (679)
T ss_pred ch
Confidence 43
No 301
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=33.26 E-value=2.6e+02 Score=23.81 Aligned_cols=73 Identities=19% Similarity=0.137 Sum_probs=46.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhcC-CCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCC-cCEEEEEeChhHH
Q 005554 429 AILLVHGFGAFLEHYRDNIYDIADG-GNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVG-EPVHLIGNSIGGY 506 (691)
Q Consensus 429 ~VlliHG~~~~~~~~~~~~~~L~~~-G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~-~~v~lvGhS~GG~ 506 (691)
.||.-|| .-...+...++.+... .-.+.++++.- +-+.+++.+.+.+.++.+.. +.+.++.-=+||
T Consensus 2 iii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~~---------~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~gg- 69 (116)
T PF03610_consen 2 IIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLYP---------DESIEDFEEKLEEAIEELDEGDGVLILTDLGGG- 69 (116)
T ss_dssp EEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEETT---------TSCHHHHHHHHHHHHHHCCTTSEEEEEESSTTS-
T ss_pred EEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECcC---------CCCHHHHHHHHHHHHHhccCCCcEEEEeeCCCC-
Confidence 4788899 4455566777777665 23566665431 24688899999999988875 445555444444
Q ss_pred HHHHHHH
Q 005554 507 FVAIVAC 513 (691)
Q Consensus 507 ial~~A~ 513 (691)
.....+.
T Consensus 70 sp~n~a~ 76 (116)
T PF03610_consen 70 SPFNEAA 76 (116)
T ss_dssp HHHHHHH
T ss_pred ccchHHH
Confidence 4444443
No 302
>PRK10279 hypothetical protein; Provisional
Probab=33.09 E-value=51 Score=33.89 Aligned_cols=33 Identities=27% Similarity=0.116 Sum_probs=26.0
Q ss_pred HHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCc
Q 005554 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWP 516 (691)
Q Consensus 484 l~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P 516 (691)
+...+++.++..-.++|.|+|+.++..+|....
T Consensus 23 VL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~~ 55 (300)
T PRK10279 23 VINALKKVGIEIDIVAGCSIGSLVGAAYACDRL 55 (300)
T ss_pred HHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCCh
Confidence 444555567777789999999999999997654
No 303
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=32.63 E-value=59 Score=30.15 Aligned_cols=33 Identities=18% Similarity=0.025 Sum_probs=25.1
Q ss_pred HHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCc
Q 005554 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWP 516 (691)
Q Consensus 484 l~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P 516 (691)
+...+++.++..-.++|-|.|+.++..++...+
T Consensus 16 vl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 16 VAKALRERGPLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCC
Confidence 334444557777789999999999999998643
No 304
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=32.56 E-value=1.7e+02 Score=24.76 Aligned_cols=68 Identities=12% Similarity=0.001 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CcEEEEECChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHh
Q 005554 90 MLELVIFALEDLRKSLKEQG-SDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLA 157 (691)
Q Consensus 90 ~~~fl~~~l~~l~~~l~~~g-~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~ 157 (691)
+...|-+-...+...|++.| +.=-+..--..+++..|++.++-..||+-.........|+..|.+.++
T Consensus 3 ~~e~l~~l~~~i~~~l~~~g~i~~~~a~~ig~~~~~~L~~~~gG~~iyiP~~~~~~~~~R~~~I~~~f~ 71 (108)
T PF08765_consen 3 WPELLSELADVIAAELERLGEIDAELAEIIGEEVALKLCRYFGGQQIYIPKCDRLLRALRNREIRREFN 71 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-S-----TTSHHHHHHHHHHHH-SS------SHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHCCEeEEeeCccHHHHHHHHHHHHHHhC
Confidence 34455566666778888888 664555556778888999999999999988877778888888888766
No 305
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=32.33 E-value=73 Score=32.24 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCC
Q 005554 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKA 132 (691)
Q Consensus 97 ~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~ 132 (691)
+..+|=+.|+++|+++.|+.|.....+..++++.+.
T Consensus 125 G~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl 160 (277)
T TIGR01544 125 GYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGV 160 (277)
T ss_pred CHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCC
Confidence 555666667777777777777666666666665554
No 306
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=31.95 E-value=1.9e+02 Score=33.44 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcce
Q 005554 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPF 175 (691)
Q Consensus 96 ~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l 175 (691)
+..++.=++|++.|++..++.||....-..++++.|++.|+.+- .|..+. ++.+.+++.| .++..-|+-+
T Consensus 444 ~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~--~PedK~---~iV~~lQ~~G-----~~VaMtGDGv 513 (673)
T PRK14010 444 DGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAEC--KPEDKI---NVIREEQAKG-----HIVAMTGDGT 513 (673)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCC--CHHHHH---HHHHHHHhCC-----CEEEEECCCh
Confidence 34555566778889999999999999999999999999988764 444333 4556677665 3555555555
Q ss_pred ec
Q 005554 176 YD 177 (691)
Q Consensus 176 ~~ 177 (691)
-+
T Consensus 514 ND 515 (673)
T PRK14010 514 ND 515 (673)
T ss_pred hh
Confidence 43
No 307
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=31.30 E-value=3.9e+02 Score=23.94 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=47.1
Q ss_pred HHHHHHHHHH----hcCCcEEEEECChHHHHHHHHHHh--CCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEe
Q 005554 97 ALEDLRKSLK----EQGSDLMIRFGRVENVIRELVEEV--KATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICL 170 (691)
Q Consensus 97 ~l~~l~~~l~----~~g~~l~~~~g~~~~~l~~l~~~~--~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~ 170 (691)
+|.++.+.|+ ++|+.+.++.-+.+-.|.+...+. +++.|+.|..- ...---.++.++...++ |++.+
T Consensus 25 tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga---~THtSiAl~DAl~~~~~----P~vEV 97 (141)
T TIGR01088 25 TLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGA---LTHTSVALRDALAAVSL----PVVEV 97 (141)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChH---HhhhHHHHHHHHHcCCC----CEEEE
Confidence 4444444444 458999999988888777776664 46788888441 11122356666766555 88888
Q ss_pred eCccee
Q 005554 171 WQTPFY 176 (691)
Q Consensus 171 ~~~~l~ 176 (691)
+-+.++
T Consensus 98 HiSNi~ 103 (141)
T TIGR01088 98 HLSNVH 103 (141)
T ss_pred EcCCcc
Confidence 765554
No 308
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=31.00 E-value=53 Score=30.28 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcEEEEc
Q 005554 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138 (691)
Q Consensus 96 ~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~ 138 (691)
.++.++-+.|++.|.++.|..+.....+..+++.+++..++.|
T Consensus 76 ~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~ 118 (177)
T TIGR01488 76 PGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFAN 118 (177)
T ss_pred cCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheee
Confidence 4566666667777888888877777777777777777766554
No 309
>PRK11175 universal stress protein UspE; Provisional
Probab=30.16 E-value=2.2e+02 Score=28.94 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCc---EEEEECChHHHHHHHHHHhCCcEEEEccc
Q 005554 99 EDLRKSLKEQGSD---LMIRFGRVENVIRELVEEVKATSVFAEEE 140 (691)
Q Consensus 99 ~~l~~~l~~~g~~---l~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 140 (691)
..+++-+++.|++ .++..|++.+.|.+.+++.+++-|++-..
T Consensus 226 ~~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~ 270 (305)
T PRK11175 226 LAMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTV 270 (305)
T ss_pred HHHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCC
Confidence 3444444455653 56678999999999999999999997654
No 310
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=29.85 E-value=67 Score=30.33 Aligned_cols=29 Identities=21% Similarity=0.086 Sum_probs=22.7
Q ss_pred HHHHhCCcCEEEEEeChhHHHHHHHHHhC
Q 005554 487 FTVEVVGEPVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 487 ll~~l~~~~v~lvGhS~GG~ial~~A~~~ 515 (691)
.+++.+...-.++|-|.||.++..++..+
T Consensus 20 ~L~e~~~~~d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 20 ALEEAGILKKRVAGTSAGAITAALLALGY 48 (194)
T ss_pred HHHHcCCCcceEEEECHHHHHHHHHHcCC
Confidence 34445666678999999999999999754
No 311
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=29.84 E-value=54 Score=33.31 Aligned_cols=30 Identities=23% Similarity=0.124 Sum_probs=23.2
Q ss_pred HHHHHHhC-CcCEEEEEeChhHHHHHHHHHh
Q 005554 485 RDFTVEVV-GEPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 485 ~~ll~~l~-~~~v~lvGhS~GG~ial~~A~~ 514 (691)
..++...+ +.+..++|||+|=+.|+.++..
T Consensus 73 ~~~l~~~g~i~p~~v~GhS~GE~aAa~~aG~ 103 (290)
T TIGR00128 73 YLKLKEQGGLKPDFAAGHSLGEYSALVAAGA 103 (290)
T ss_pred HHHHHHcCCCCCCEEeecCHHHHHHHHHhCC
Confidence 34455666 8899999999999888877643
No 312
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=29.72 E-value=3.3e+02 Score=22.59 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEE-------------EC-ChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHH
Q 005554 95 IFALEDLRKSLKEQGSDLMIR-------------FG-RVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETL 156 (691)
Q Consensus 95 ~~~l~~l~~~l~~~g~~l~~~-------------~g-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l 156 (691)
-++|.+|..-.+..|+...-. .| .-.+.+.+++++.+++.|++|.+..|...+ .+.+.+
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~r---NLe~~~ 79 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQR---NLEKAL 79 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHH---HHHHHH
Confidence 367888888888888754321 12 234668889999999999999998776554 444444
No 313
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=29.56 E-value=2.6e+02 Score=28.30 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=46.5
Q ss_pred CeEEEEcCCCCChH------HHHHHHHHH-hcCCCEEEEeCCCCCcCC--------CCC-----C--cCCCHHHHHHHHH
Q 005554 428 PAILLVHGFGAFLE------HYRDNIYDI-ADGGNRVWAITLLGFGRS--------EKP-----N--IVYTELMWSELLR 485 (691)
Q Consensus 428 p~VlliHG~~~~~~------~~~~~~~~L-~~~G~~Vi~~D~~G~G~S--------~~~-----~--~~~s~~~~a~dl~ 485 (691)
..|||+=|.+.+.. .-..+.+.+ ...+-..+++=.+|.|.. ... . ....++.-+....
T Consensus 2 ~iv~~fDGT~n~~~~~~~~TNV~rL~~~~~~~~~~~q~~~Y~~GvGt~~~~~~~~~~~~~~~~~~~a~g~g~~~~I~~ay 81 (277)
T PF09994_consen 2 RIVVFFDGTGNNPDNDPPPTNVARLYDAYKDRDGERQIVYYIPGVGTEFGSEFGESGRALDRLLGGAFGWGIEARIRDAY 81 (277)
T ss_pred cEEEEecCCCCCCCCCccccHHHHHHHHhhccCCCceeEEEecccccccccccccccchhhhccCchhhcchHHHHHHHH
Confidence 45677777654321 112344444 222324444555677761 110 0 1223443333333
Q ss_pred H-HHHHhC-CcCEEEEEeChhHHHHHHHHHh
Q 005554 486 D-FTVEVV-GEPVHLIGNSIGGYFVAIVACL 514 (691)
Q Consensus 486 ~-ll~~l~-~~~v~lvGhS~GG~ial~~A~~ 514 (691)
. +++... .+++.++|.|-|+..|-.+|..
T Consensus 82 ~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 82 RFLSKNYEPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred HHHHhccCCcceEEEEecCccHHHHHHHHHH
Confidence 3 334443 3679999999999999998865
No 314
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=29.50 E-value=68 Score=32.39 Aligned_cols=32 Identities=19% Similarity=0.019 Sum_probs=25.0
Q ss_pred HHHHHHHhCCcCEEEEEeChhHHHHHHHHHhC
Q 005554 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 484 l~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~ 515 (691)
+...+++.++..-.++|-|+|+.++..+|..+
T Consensus 28 VL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 28 ILQALEEAGIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHcCCCccEEEEECHHHHHHHHHHcCC
Confidence 44445666776668899999999999999764
No 315
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=29.38 E-value=1.2e+02 Score=32.09 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=39.6
Q ss_pred HHHhcCC--cEEEEECChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCC
Q 005554 104 SLKEQGS--DLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161 (691)
Q Consensus 104 ~l~~~g~--~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i 161 (691)
+|+++|+ ..+.+.+.|.....+...+.++..|+.-.|+.+..+.--.+..+.|++.||
T Consensus 37 ~l~~lgi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~D~d~~G~~~~~~~~~~L~~aGi 96 (360)
T PRK14719 37 SLKNLKINANFITVSNTPVFQIADDLIAENISEVILLTDFDRAGRVYAKNIMEEFQSRGI 96 (360)
T ss_pred HHHHcCCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEECCCCCCCccchHHHHHHHHCCC
Confidence 5677787 466667777766666656668888887777776444434466778888887
No 316
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=28.68 E-value=2.6e+02 Score=26.58 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCcc--c
Q 005554 441 EHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWPA--V 518 (691)
Q Consensus 441 ~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P~--~ 518 (691)
......++.+.++++.++.+|-+|... .-.+..+.+..+++......+++|--+..+.-.+..+..+-+ .
T Consensus 70 ~~~~~~l~~~~~~~~D~vlIDT~Gr~~--------~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~ 141 (196)
T PF00448_consen 70 EIAREALEKFRKKGYDLVLIDTAGRSP--------RDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG 141 (196)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEE-SSSS--------THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCcch--------hhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc
Confidence 344456666777789999999998752 234567778888888877777777666666666654444322 4
Q ss_pred cceEEEe
Q 005554 519 VKSVVLI 525 (691)
Q Consensus 519 V~~lVll 525 (691)
+.++|+-
T Consensus 142 ~~~lIlT 148 (196)
T PF00448_consen 142 IDGLILT 148 (196)
T ss_dssp TCEEEEE
T ss_pred CceEEEE
Confidence 7888875
No 317
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=28.43 E-value=1.5e+02 Score=29.72 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=44.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCCCC--------CcCCCC------CC-cCCCHHHHHHHHHHHHHHh
Q 005554 427 GPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITLLG--------FGRSEK------PN-IVYTELMWSELLRDFTVEV 491 (691)
Q Consensus 427 ~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~~G--------~G~S~~------~~-~~~s~~~~a~dl~~ll~~l 491 (691)
-|-|+|..|.++ .++.|+..||.|+..|+-= .|..-. |. -.-+.+.+.+.+.+.++..
T Consensus 252 vPmi~fakG~g~-------~Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~f 324 (359)
T KOG2872|consen 252 VPMILFAKGSGG-------ALEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDF 324 (359)
T ss_pred CceEEEEcCcch-------HHHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHh
Confidence 467888888654 5677888899999999731 111100 11 1225667778888888888
Q ss_pred CCcCEE-EEEeC
Q 005554 492 VGEPVH-LIGNS 502 (691)
Q Consensus 492 ~~~~v~-lvGhS 502 (691)
|.++.+ =+||.
T Consensus 325 G~~ryI~NLGHG 336 (359)
T KOG2872|consen 325 GKSRYIANLGHG 336 (359)
T ss_pred CccceEEecCCC
Confidence 865543 35764
No 318
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=27.64 E-value=84 Score=30.65 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=22.0
Q ss_pred HHHhCCcCEEEEEeChhHHHHHHHHHhC
Q 005554 488 TVEVVGEPVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 488 l~~l~~~~v~lvGhS~GG~ial~~A~~~ 515 (691)
+++.+.+.-.++|-|.|+.++..+|...
T Consensus 22 L~e~gi~~~~i~GtSaGAi~aa~~a~g~ 49 (221)
T cd07210 22 LLEMGLEPSAISGTSAGALVGGLFASGI 49 (221)
T ss_pred HHHcCCCceEEEEeCHHHHHHHHHHcCC
Confidence 3444666668999999999999999754
No 319
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=27.27 E-value=70 Score=32.95 Aligned_cols=33 Identities=18% Similarity=0.008 Sum_probs=25.2
Q ss_pred HHHHHHHhCCcCEEEEEeChhHHHHHHHHHhCc
Q 005554 484 LRDFTVEVVGEPVHLIGNSIGGYFVAIVACLWP 516 (691)
Q Consensus 484 l~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P 516 (691)
+.+.++..++..-.+.|-|+|+.++..+|..+.
T Consensus 29 Vl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 29 VLKALEEAGIPIDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred HHHHHHHcCCCccEEEecCHHHHHHHHHHcCCC
Confidence 334455556677899999999999999998543
No 320
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=27.22 E-value=1e+02 Score=29.05 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcEEEEc
Q 005554 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAE 138 (691)
Q Consensus 96 ~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~ 138 (691)
.+..++=+.|++.|+++.|+.+.....+..+++.+++..++.+
T Consensus 83 ~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~ 125 (201)
T TIGR01491 83 DYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSN 125 (201)
T ss_pred ccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEE
Confidence 4555666666677777777777777777777777776665543
No 321
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=26.36 E-value=7.7e+02 Score=25.85 Aligned_cols=73 Identities=18% Similarity=0.120 Sum_probs=42.8
Q ss_pred EEcCeEEEEEEeCCCCCeEEEEcCCCCC---hHHHHHHHHHHhcCCC-EEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHH
Q 005554 412 RWNGYQIQYTVAGKEGPAILLVHGFGAF---LEHYRDNIYDIADGGN-RVWAITLLGFGRSEKPNIVYTELMWSELLRDF 487 (691)
Q Consensus 412 ~~~g~~i~y~~~g~~~p~VlliHG~~~~---~~~~~~~~~~L~~~G~-~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~l 487 (691)
..+|...-+...|++.--||+= |.... .+........|.+.|. .-+.+|. .||.|.+. ...+...+.++
T Consensus 213 ~~~G~~aiv~T~GN~~~HvILR-Gg~~PNY~~~~v~~a~~~l~~~~l~~~vmVDc-SH~NS~K~-----~~~Q~~V~~~v 285 (356)
T PRK12822 213 GLTGCISTLLSDGNPHGHIILR-GGREPNYGLSDVTKASKLLHDEGLNHRLIIDC-SHGNSQKV-----AKNQISVAREL 285 (356)
T ss_pred CCCCcEEEEEcCCCCCceEEEe-CCCCCCCCHHHHHHHHHHHHHCCCCCcEEEEC-CCccCCCC-----HHHHHHHHHHH
Confidence 3456666777778665555555 43332 3333445566776665 3578887 78888653 34455555555
Q ss_pred HHHh
Q 005554 488 TVEV 491 (691)
Q Consensus 488 l~~l 491 (691)
++.+
T Consensus 286 ~~q~ 289 (356)
T PRK12822 286 CDQL 289 (356)
T ss_pred HHHH
Confidence 5554
No 322
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=26.36 E-value=2.7e+02 Score=31.43 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhcC-CcEEEEECChHHHHHHHHHHhCCcEEEEcc
Q 005554 94 VIFALEDLRKSLKEQG-SDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (691)
Q Consensus 94 l~~~l~~l~~~l~~~g-~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~ 139 (691)
+..+..++=+.|++.| +++.+..|++......++++.+++.++.+.
T Consensus 385 ~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~ 431 (556)
T TIGR01525 385 LRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAEL 431 (556)
T ss_pred chHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccC
Confidence 4467777778888899 999999999999999999999999988753
No 323
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=26.12 E-value=4.9e+02 Score=23.47 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=41.9
Q ss_pred HhcCCcEEEEECChHHHHHHHHHHh--CCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCccee
Q 005554 106 KEQGSDLMIRFGRVENVIRELVEEV--KATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFY 176 (691)
Q Consensus 106 ~~~g~~l~~~~g~~~~~l~~l~~~~--~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l~ 176 (691)
+++|+.+.++.-+.+-.|.+..++. +++.|+.|..- + ..---.++.++...++ |++.++-+.++
T Consensus 40 ~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga--~-THtSiAl~DAl~~~~~----P~VEVHiSNi~ 105 (146)
T PRK13015 40 EALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGA--Y-THTSVAIRDALAALEL----PVIEVHISNVH 105 (146)
T ss_pred HHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchH--H-hhhHHHHHHHHHcCCC----CEEEEEcCCcc
Confidence 3458999999888887777766553 57889988541 1 1112255666665555 88888765554
No 324
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=24.85 E-value=2.2e+02 Score=32.08 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcCC-cEEEEECChHHHHHHHHHHhCCcEEEEccc
Q 005554 94 VIFALEDLRKSLKEQGS-DLMIRFGRVENVIRELVEEVKATSVFAEEE 140 (691)
Q Consensus 94 l~~~l~~l~~~l~~~g~-~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 140 (691)
+..+..++=++|++.|+ ++.+..|++......++++.+++.++.+..
T Consensus 363 l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~ 410 (536)
T TIGR01512 363 PRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELL 410 (536)
T ss_pred chHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccC
Confidence 44677777788888999 999999999999999999999998876543
No 325
>PRK11175 universal stress protein UspE; Provisional
Probab=24.82 E-value=5.2e+02 Score=26.14 Aligned_cols=88 Identities=13% Similarity=0.010 Sum_probs=51.7
Q ss_pred CCCCcCCHHHHHHHh----C-CCeEEEEEECCcccc---cC--Chh---HHHH---HHHHHHHHHHHHHhcCCcEE--EE
Q 005554 54 DLRVDDHLGLVAASK----Y-QAVVPLYVFDHRILS---RY--SNE---MLEL---VIFALEDLRKSLKEQGSDLM--IR 115 (691)
Q Consensus 54 dlRl~DN~aL~~A~~----~-~~~~~~f~~~~~~~~---~~--~~~---~~~f---l~~~l~~l~~~l~~~g~~l~--~~ 115 (691)
|+=-....||..|.. . ..+..++++++.... .. ... +... ..+.|.+..+.++..|++.. +.
T Consensus 11 D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 90 (305)
T PRK11175 11 DPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYLDAGIPIEIKVV 90 (305)
T ss_pred CCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEe
Confidence 333456788888853 2 367777766432110 00 110 1111 12334444455556676653 33
Q ss_pred -ECChHHHHHHHHHHhCCcEEEEcccc
Q 005554 116 -FGRVENVIRELVEEVKATSVFAEEEV 141 (691)
Q Consensus 116 -~g~~~~~l~~l~~~~~~~~v~~~~~~ 141 (691)
.|++.+.|.+.+++.+++-|+.-..-
T Consensus 91 ~~g~~~~~i~~~a~~~~~DLiV~G~~~ 117 (305)
T PRK11175 91 WHNRPFEAIIQEVIAGGHDLVVKMTHQ 117 (305)
T ss_pred cCCCcHHHHHHHHHhcCCCEEEEeCCC
Confidence 58999999999999999999997654
No 326
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=24.68 E-value=1.5e+02 Score=27.62 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcE--EEEccc
Q 005554 100 DLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATS--VFAEEE 140 (691)
Q Consensus 100 ~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~--v~~~~~ 140 (691)
++=+.+++.|.+++|+.|.+...+..+++..++.. |+.+..
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 55566778899999999999999999999999988 887776
No 327
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=24.37 E-value=3.7e+02 Score=31.14 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcEEEEcc
Q 005554 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEE 139 (691)
Q Consensus 96 ~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~ 139 (691)
....+.=++|++.|+...++.||.......++++.+++.++.+-
T Consensus 449 p~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~ 492 (675)
T TIGR01497 449 GGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEA 492 (675)
T ss_pred hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCC
Confidence 45666667778889999999999999999999999999988753
No 328
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=24.06 E-value=4.2e+02 Score=24.97 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=39.5
Q ss_pred CCCeEEEEcCCCCChHH--HHHHHHHHhcCCCEEEEeCC--CCCcCCCCCCcCCCHHHHHHHHHHH
Q 005554 426 EGPAILLVHGFGAFLEH--YRDNIYDIADGGNRVWAITL--LGFGRSEKPNIVYTELMWSELLRDF 487 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~--~~~~~~~L~~~G~~Vi~~D~--~G~G~S~~~~~~~s~~~~a~dl~~l 487 (691)
.++.+|.+-|.+++... -..+.+.|.+.|++++.+|= -=||.+. .-.++.++-.+.+..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~--dLgFs~edR~eniRRv 84 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR--DLGFSREDRIENIRRV 84 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC--CCCCChHHHHHHHHHH
Confidence 36789999999887543 23466778888999999982 1134332 2356666666655554
No 329
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=23.77 E-value=65 Score=30.41 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=25.3
Q ss_pred eEEEEcC---CCCChHHHHHHHHHHhcCCCEEEEeC
Q 005554 429 AILLVHG---FGAFLEHYRDNIYDIADGGNRVWAIT 461 (691)
Q Consensus 429 ~VlliHG---~~~~~~~~~~~~~~L~~~G~~Vi~~D 461 (691)
.||++|. ...+......+++.|.++||+++.++
T Consensus 153 ~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 153 DIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred CEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEHH
Confidence 5899994 23345666778999999999998874
No 330
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=23.66 E-value=2e+02 Score=26.92 Aligned_cols=55 Identities=15% Similarity=0.309 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCC
Q 005554 97 ALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSL 161 (691)
Q Consensus 97 ~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i 161 (691)
+++.|+ ++|+.+.|..|.+...+..++++.++..++...+. .-..+.+.+++.|+
T Consensus 56 ~i~~L~----~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g~~~------k~~~l~~~~~~~gl 110 (183)
T PRK09484 56 GIRCLL----TSGIEVAIITGRKSKLVEDRMTTLGITHLYQGQSN------KLIAFSDLLEKLAI 110 (183)
T ss_pred HHHHHH----HCCCEEEEEeCCCcHHHHHHHHHcCCceeecCCCc------HHHHHHHHHHHhCC
Confidence 555554 47999999999999999999999999877753221 12456666666554
No 331
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=23.65 E-value=3.9e+02 Score=27.16 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCE--EEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEEeChhHHH
Q 005554 442 HYRDNIYDIADGGNR--VWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIGNSIGGYF 507 (691)
Q Consensus 442 ~~~~~~~~L~~~G~~--Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvGhS~GG~i 507 (691)
.+...++.+.+.|+. =|.+|. |+|.+.... .++ .+.+.+..+ ..+ .-.+++|+|-=.++
T Consensus 164 ~l~~~i~~a~~~GI~~~~IilDP-GiGF~k~~~--~n~-~ll~~l~~l-~~l--g~Pilvg~SRKsfi 224 (282)
T PRK11613 164 YFIEQIARCEAAGIAKEKLLLDP-GFGFGKNLS--HNY-QLLARLAEF-HHF--NLPLLVGMSRKSMI 224 (282)
T ss_pred HHHHHHHHHHHcCCChhhEEEeC-CCCcCCCHH--HHH-HHHHHHHHH-HhC--CCCEEEEecccHHH
Confidence 334455666677885 677885 677643221 111 122222222 223 45789999844433
No 332
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.45 E-value=4.3e+02 Score=26.31 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeC
Q 005554 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQ 172 (691)
Q Consensus 93 fl~~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~ 172 (691)
|+.+-+..+.+.+++.|..+.+...+......+.....+++.|++...... +. ..+.+.+.++ +++.++.
T Consensus 18 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~-----~~-~~~~~~~~~i----pvV~~~~ 87 (283)
T cd06279 18 VASQFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGVPRD-----DP-LVAALLRRGL----PVVVVDQ 87 (283)
T ss_pred cHHHHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCCCCC-----hH-HHHHHHHcCC----CEEEEec
Confidence 666777778888999999998887654333444556678999888643211 12 2334555666 7777753
No 333
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=23.41 E-value=1.1e+02 Score=26.84 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCeEEEEcCCCCChHHHHH--HHHHHhcCC
Q 005554 425 KEGPAILLVHGFGAFLEHYRD--NIYDIADGG 454 (691)
Q Consensus 425 ~~~p~VlliHG~~~~~~~~~~--~~~~L~~~G 454 (691)
+.+|.|+-+||+.|+...|-. +++.|-..|
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
No 334
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=23.19 E-value=2.2e+02 Score=24.08 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCC----cEEEEcccc
Q 005554 93 LVIFALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKA----TSVFAEEEV 141 (691)
Q Consensus 93 fl~~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~----~~v~~~~~~ 141 (691)
-+.+++.++=+.|++.|..+.++.+.....+...++..+. +.++.....
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 76 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGA 76 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchh
Confidence 3446667777778888999999999999999888888876 556655544
No 335
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.15 E-value=4.8e+02 Score=27.95 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=55.4
Q ss_pred CeEEEEcCCCCC---hHHHHHHHHHHhcCCCEEEEeCCCC--CcCCCCCCcCCCHHHHHHHHHHHHHH---hCCcCEEEE
Q 005554 428 PAILLVHGFGAF---LEHYRDNIYDIADGGNRVWAITLLG--FGRSEKPNIVYTELMWSELLRDFTVE---VVGEPVHLI 499 (691)
Q Consensus 428 p~VlliHG~~~~---~~~~~~~~~~L~~~G~~Vi~~D~~G--~G~S~~~~~~~s~~~~a~dl~~ll~~---l~~~~v~lv 499 (691)
.+||+++-+... +......+..|.+.|+.|+-+..-- +|... ....-+.+++.+.+...+.. +..+++.+-
T Consensus 113 ~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g-~g~~~~~~~i~~~v~~~~~~~~~~~~~~vlit 191 (390)
T TIGR00521 113 APIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEG-KGRLAEPETIVKAAEREFSPKEDLEGKRVLIT 191 (390)
T ss_pred CCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCccccccccc-CCCCCCHHHHHHHHHHHHhhccccCCceEEEe
Confidence 466677664322 2344667788888888877665321 23322 12234677777777776643 444566666
Q ss_pred Ee------------------ChhHHHHHHHHHhCccccceEEEecCC
Q 005554 500 GN------------------SIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 500 Gh------------------S~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
|- .||..++..++.+- ..++++...
T Consensus 192 ~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G----a~V~~~~g~ 234 (390)
T TIGR00521 192 AGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG----ADVTLITGP 234 (390)
T ss_pred cCCccCCCCceeeecCCCcchHHHHHHHHHHHCC----CEEEEeCCC
Confidence 65 36677777666543 345665543
No 336
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=22.82 E-value=1.6e+02 Score=25.01 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCcEEEE-ECChHHHHHHHHHH--hCCcEEEEccc
Q 005554 98 LEDLRKSLKEQGSDLMIR-FGRVENVIRELVEE--VKATSVFAEEE 140 (691)
Q Consensus 98 l~~l~~~l~~~g~~l~~~-~g~~~~~l~~l~~~--~~~~~v~~~~~ 140 (691)
|.....+|++.|+.|+++ .|++.. +.++++. +... ||++.+
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~-ly~D~~ 45 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGFPFP-LYVDPE 45 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCCCCc-EEEeCc
Confidence 667788899999998887 466655 8888865 4555 777764
No 337
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=22.78 E-value=61 Score=29.69 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=27.7
Q ss_pred CCCCcCCCCC---CcCCCHHHHHHHH----HHHHHHhCC----cCEEEEEeChhHH
Q 005554 462 LLGFGRSEKP---NIVYTELMWSELL----RDFTVEVVG----EPVHLIGNSIGGY 506 (691)
Q Consensus 462 ~~G~G~S~~~---~~~~s~~~~a~dl----~~ll~~l~~----~~v~lvGhS~GG~ 506 (691)
+-|||..... -..++.++++..+ ..+.+..+. +++.|+|.||+..
T Consensus 61 lVGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 61 LVGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EE--EESSTSSSEETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred EEEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 3488877221 1467889999888 445544432 6799999999887
No 338
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=22.64 E-value=1.1e+02 Score=28.50 Aligned_cols=29 Identities=28% Similarity=0.068 Sum_probs=22.3
Q ss_pred HHHhCCcCEEEEEeChhHHHHHHHHHhCc
Q 005554 488 TVEVVGEPVHLIGNSIGGYFVAIVACLWP 516 (691)
Q Consensus 488 l~~l~~~~v~lvGhS~GG~ial~~A~~~P 516 (691)
+++.+...-.++|-|.|+.++..++..++
T Consensus 22 L~e~g~~~d~i~GtSaGAi~aa~~a~g~~ 50 (175)
T cd07228 22 LEEEGIEIDIIAGSSIGALVGALYAAGHL 50 (175)
T ss_pred HHHCCCCeeEEEEeCHHHHHHHHHHcCCC
Confidence 34445555678899999999999987654
No 339
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=22.60 E-value=5.2e+02 Score=23.03 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=35.6
Q ss_pred ECChHHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCceeEeeCcce
Q 005554 116 FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPF 175 (691)
Q Consensus 116 ~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~l 175 (691)
.+++.+.|.+.+.+++-..|.+| |..+++.+.+.|| |+..+.+...
T Consensus 83 ~~~aDe~i~~~a~~~~~~iVaTn----------D~eLk~rlr~~GI----Pvi~lr~r~~ 128 (136)
T COG1412 83 GRYADECLLEAALKHGRYIVATN----------DKELKRRLRENGI----PVITLRQRKL 128 (136)
T ss_pred CCChHHHHHHHHHHcCCEEEEeC----------CHHHHHHHHHcCC----CEEEEeCCeE
Confidence 56778899999999995566666 4678888888888 9998875443
No 340
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=22.39 E-value=96 Score=31.28 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=28.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeC
Q 005554 429 AILLVHGFGAFLEHYRDNIYDIADGGNRVWAIT 461 (691)
Q Consensus 429 ~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D 461 (691)
.||++|-...+......++..|.++||+++.++
T Consensus 232 ~IILmHd~~~T~~aL~~iI~~Lk~kGy~fvtl~ 264 (268)
T TIGR02873 232 AMVLMHPTASSTEGLEEMITIIKEKGYKIGTIT 264 (268)
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHCCCEEEeHH
Confidence 688999876677778889999999999998875
No 341
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=22.14 E-value=1.1e+02 Score=29.59 Aligned_cols=32 Identities=31% Similarity=0.187 Sum_probs=24.7
Q ss_pred HHHHHHhCCcCEEEEEeChhHHHHHHHHHhCc
Q 005554 485 RDFTVEVVGEPVHLIGNSIGGYFVAIVACLWP 516 (691)
Q Consensus 485 ~~ll~~l~~~~v~lvGhS~GG~ial~~A~~~P 516 (691)
...+.+.+...-.+.|.|.|+.++..+|...+
T Consensus 17 l~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 17 LKALAEAGIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHcCCCCCEEEEECHHHHHHHHHHcCCc
Confidence 33444556666688999999999999998765
No 342
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.96 E-value=4e+02 Score=26.08 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEECC-h---HHHHHHHHHHhCCcEEEEccccChhHHHHHHHHHHHHhhcCCCCCCcee
Q 005554 93 LVIFALEDLRKSLKEQGSDLMIRFGR-V---ENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKI 168 (691)
Q Consensus 93 fl~~~l~~l~~~l~~~g~~l~~~~g~-~---~~~l~~l~~~~~~~~v~~~~~~~~~~~~~~~~v~~~l~~~~i~~~~~~~ 168 (691)
|..+-+..+++.+++.|..+.+..++ . .+.+.++....+++.|++...... ..+.+.+.+.+| +++
T Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~------~~~~~~~~~~~i----pvV 87 (270)
T cd06294 18 FFIEVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED------DPIIDYLKEEKF----PFV 87 (270)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcCC------cHHHHHHHhcCC----CEE
Confidence 55666777888888889998876542 2 234555555667898887532211 123344555666 777
Q ss_pred Eee
Q 005554 169 CLW 171 (691)
Q Consensus 169 ~~~ 171 (691)
.++
T Consensus 88 ~~~ 90 (270)
T cd06294 88 VIG 90 (270)
T ss_pred EEC
Confidence 663
No 343
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms]
Probab=21.88 E-value=11 Score=41.46 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=73.9
Q ss_pred cEEEEEcCCCCCcCCHHHHHHHhC--C--CeEEEEEECCcccccCChhHHHHHHHHHHHHHHHHHhcCCcEEEEECChHH
Q 005554 46 SAVIWFKQDLRVDDHLGLVAASKY--Q--AVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVEN 121 (691)
Q Consensus 46 ~~l~W~r~dlRl~DN~aL~~A~~~--~--~~~~~f~~~~~~~~~~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g~~~~ 121 (691)
...+|+-++=++.||.++..|.+. . ..+..-.++|...-..+..+--+.+.+.+.+..+....-++.++..+...+
T Consensus 99 ~~~~~~~p~~~vrD~~~~~~a~~l~i~v~s~~s~~~~~~~~~i~~n~~k~pls~~~~~~~~~~~~~~~~p~~v~~~~~~~ 178 (531)
T KOG0133|consen 99 KFEYDMEPDGKVRDATIKSLATELGLSVVSPVSHTLYLPDKIIEANGGKPPLSYKTFRGVCQSMSAPKIPALVLSGLAVE 178 (531)
T ss_pred EEEEeccCccccccHHHHHHHHHhhhhhcccCchhhhcHHHHHHhcCCCCccccccccccccccccccccccccccccCC
Confidence 367999999999999999999765 1 122223334433333456667788899999999998888888888999999
Q ss_pred HHHHHHHHhCCcEEEEccccC
Q 005554 122 VIRELVEEVKATSVFAEEEVE 142 (691)
Q Consensus 122 ~l~~l~~~~~~~~v~~~~~~~ 142 (691)
..+.+++..++.+++...+..
T Consensus 179 ~~~~~~~~~~~~~~v~~~e~l 199 (531)
T KOG0133|consen 179 KHPNFLANSKASAVVPTLELL 199 (531)
T ss_pred CChhhhhhcccccccCCchhh
Confidence 999999988888887766543
No 344
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=21.84 E-value=1e+02 Score=33.74 Aligned_cols=61 Identities=23% Similarity=0.212 Sum_probs=42.9
Q ss_pred CCcEEEEEeCCCCCCChhHHHHHHHHhC------CCcEEEEeCCCCCCCccChHHHHHHHHHHHHhh
Q 005554 621 KEKVLIIQGIKDPISDSKSKVAMFKEHC------AGIVIRELDAGHCPHDEKPEEVNSIISEWIVTI 681 (691)
Q Consensus 621 ~~PvLiI~G~~D~~vp~~~~~~~~~~~~------~~~~~~~~~~GH~~~~e~pe~v~~~I~~fL~~~ 681 (691)
+.+++...|-.|..+++-......+... ....+.+.++||++..++|+...+.+..|+...
T Consensus 425 ~Lkw~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~aGHMvp~d~P~~~~~~~~~~~~~~ 491 (498)
T COG2939 425 KLKWLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYEAGHMVPYDRPESSLEMVNLWINGY 491 (498)
T ss_pred cceEeeecchhhhcCCCcccccchhhcccccccCCceEEEEecCcceeecCChHHHHHHHHHHHhhc
Confidence 4578888888888888753222222221 233344459999999999999999999998763
No 345
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=21.64 E-value=2e+02 Score=29.54 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCc---CE-EEEEeChhHHHHHHHHH
Q 005554 453 GGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGE---PV-HLIGNSIGGYFVAIVAC 513 (691)
Q Consensus 453 ~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~---~v-~lvGhS~GG~ial~~A~ 513 (691)
+|++|+++|==|. . --..+..|..+.+.++.. .+ .+.|-|.||.+|+.++.
T Consensus 6 ~~~riLsLdGGGi------r----G~~~~~vL~~Le~~~~~~i~~~fDli~GTStGgiiA~~la~ 60 (308)
T cd07211 6 RGIRILSIDGGGT------R----GVVALEILRKIEKLTGKPIHELFDYICGVSTGAILAFLLGL 60 (308)
T ss_pred CCcEEEEECCChH------H----HHHHHHHHHHHHHHhCCCchhhcCEEEecChhHHHHHHHhc
Confidence 4688888873221 0 001233444444444321 23 46799999999999886
No 346
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=21.10 E-value=9.7e+02 Score=25.09 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcCCcEEEEECC
Q 005554 87 SNEMLELVIFALEDLRKSLKEQGSDLMIRFGR 118 (691)
Q Consensus 87 ~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g~ 118 (691)
++.-..++.++=+++++=|....-+|+|+.|.
T Consensus 28 ~~~~~~~v~~~R~~I~~Il~g~d~rllvIvGP 59 (348)
T PRK12756 28 TPDVADHVTDSRRRIEKILNGEDPRLLVIIGP 59 (348)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 66677788888888988898888888888763
No 347
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=21.05 E-value=4.4e+02 Score=28.36 Aligned_cols=73 Identities=10% Similarity=0.066 Sum_probs=41.3
Q ss_pred CCeEEEEcCCCCC---hHHHHHHHHHHhcCCCEEEEeCCCCC---cCCCCCCcCCCHHHHHHHHHHHHHH--hCCcCEEE
Q 005554 427 GPAILLVHGFGAF---LEHYRDNIYDIADGGNRVWAITLLGF---GRSEKPNIVYTELMWSELLRDFTVE--VVGEPVHL 498 (691)
Q Consensus 427 ~p~VlliHG~~~~---~~~~~~~~~~L~~~G~~Vi~~D~~G~---G~S~~~~~~~s~~~~a~dl~~ll~~--l~~~~v~l 498 (691)
+.+||+++.+... .......+..|.+.|+.|+-++ +|+ |.... ..--+.+++...+...+.. +..+++.+
T Consensus 116 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~-~g~la~~~~g~-gr~~~~~~I~~~~~~~~~~~~l~gk~vlI 193 (399)
T PRK05579 116 TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPA-SGRLACGDVGP-GRMAEPEEIVAAAERALSPKDLAGKRVLI 193 (399)
T ss_pred CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCC-CccccCCCcCC-CCCCCHHHHHHHHHHHhhhcccCCCEEEE
Confidence 3467777754322 2234567788888899988664 343 32221 1234667777777766643 33345666
Q ss_pred EEe
Q 005554 499 IGN 501 (691)
Q Consensus 499 vGh 501 (691)
-|-
T Consensus 194 TgG 196 (399)
T PRK05579 194 TAG 196 (399)
T ss_pred eCC
Confidence 565
No 348
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=21.03 E-value=9.1 Score=38.63 Aligned_cols=89 Identities=26% Similarity=0.289 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHHhcCCCEEEEeCC----------CCCcCCCCCCcCCCHHH--------HHHHHHHH
Q 005554 426 EGPAILLVHGFGAFLEHYRDNIYDIADGGNRVWAITL----------LGFGRSEKPNIVYTELM--------WSELLRDF 487 (691)
Q Consensus 426 ~~p~VlliHG~~~~~~~~~~~~~~L~~~G~~Vi~~D~----------~G~G~S~~~~~~~s~~~--------~a~dl~~l 487 (691)
.-|.+++.||++...+........+...++.++..+. +|++.+......+.... ...+....
T Consensus 48 ~~p~v~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (299)
T COG1073 48 KLPAVVFLHGFGSSKEQSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFSAAVLLLLSEGVLDKDYRLL 127 (299)
T ss_pred cCceEEeccCccccccCcchHHHHhhhceeEEeeeccccccccccccccccCccccccccchhheeeeccccccHHHHHH
Confidence 4788999999888777665577777777888777764 33322222111111110 01111111
Q ss_pred HHHhCCcCEEEEEeChhHHHHHHHHHhCc
Q 005554 488 TVEVVGEPVHLIGNSIGGYFVAIVACLWP 516 (691)
Q Consensus 488 l~~l~~~~v~lvGhS~GG~ial~~A~~~P 516 (691)
... ..+....|+++|+..+..++...+
T Consensus 128 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~ 154 (299)
T COG1073 128 GAS--LGPRILAGLSLGGPSAGALLAWGP 154 (299)
T ss_pred hhh--cCcceEEEEEeeccchHHHhhcch
Confidence 111 156777778877777777776665
No 349
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=21.00 E-value=1.1e+02 Score=29.99 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=27.6
Q ss_pred CeEEEEcCC-CCChHHHHHHHHHHhcCCCEEEEeC
Q 005554 428 PAILLVHGF-GAFLEHYRDNIYDIADGGNRVWAIT 461 (691)
Q Consensus 428 p~VlliHG~-~~~~~~~~~~~~~L~~~G~~Vi~~D 461 (691)
..||++|.. ..+.+....++..|.++||+++.++
T Consensus 187 g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~fvtl~ 221 (224)
T TIGR02884 187 GAILLLHAVSKDNAEALDKIIKDLKEQGYTFKSLD 221 (224)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEhH
Confidence 368999974 4556777889999999999999875
No 350
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=20.98 E-value=5.5e+02 Score=26.33 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=44.9
Q ss_pred CCcCCHHHHHHHhC------CCeEEEEEECCcccc-c--CChhHHHHHHHHHHHHHHHHHhcCCcEEEEECCh
Q 005554 56 RVDDHLGLVAASKY------QAVVPLYVFDHRILS-R--YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRV 119 (691)
Q Consensus 56 Rl~DN~aL~~A~~~------~~~~~~f~~~~~~~~-~--~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g~~ 119 (691)
|+.-|+++..-.+. +-+.|+||.+..... . .=+...+|=.+.|.+.-+++.++|++=+++.|-+
T Consensus 2 RlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~sMPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~ 74 (314)
T cd00384 2 RLRRSPALRDLVRETRLSPDDLIYPLFVVEGIDEKEEISSMPGVYRLSVDSLVEEAEELADLGIRAVILFGIP 74 (314)
T ss_pred CCCCChHHHHHHHcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 67778888776543 247799999763322 1 1133445556888888899999999988888874
No 351
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=20.92 E-value=2.8e+02 Score=28.77 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=30.1
Q ss_pred EcCeEEEEEEeCCC------CCeEEEEcCCCCChHHHHHHHHHHhcC--CCEEEEeCCCC
Q 005554 413 WNGYQIQYTVAGKE------GPAILLVHGFGAFLEHYRDNIYDIADG--GNRVWAITLLG 464 (691)
Q Consensus 413 ~~g~~i~y~~~g~~------~p~VlliHG~~~~~~~~~~~~~~L~~~--G~~Vi~~D~~G 464 (691)
..+-.+||...+++ +++=+|+||.|..... ..+-++|.++ +..|+.+|.-+
T Consensus 191 p~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTi-tgvGRylke~~~~~kVv~vdp~~ 249 (362)
T KOG1252|consen 191 PGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTI-TGVGRYLKEQNPNIKVVGVDPQE 249 (362)
T ss_pred CCCcccccccccHHHHHHhcCCCCEEEeccCCCcee-echhHHHHHhCCCCEEEEeCCCc
Confidence 34445677666642 6777888886554322 2344445443 47888888543
No 352
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=20.82 E-value=98 Score=34.64 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=25.7
Q ss_pred HHHHH-HHhCCcCEEEEEeChhHHHHHHHHHhC
Q 005554 484 LRDFT-VEVVGEPVHLIGNSIGGYFVAIVACLW 515 (691)
Q Consensus 484 l~~ll-~~l~~~~v~lvGhS~GG~ial~~A~~~ 515 (691)
+.+++ +..|++|-.++|||+|=+.|+..|.-.
T Consensus 254 La~ll~~~~GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 254 LTQLLCDEFAIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred HHHHHHHhcCCCCCEEeecCHHHHHHHHHhCCC
Confidence 34445 578899999999999999998888654
No 353
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=20.68 E-value=6.1e+02 Score=26.07 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=47.0
Q ss_pred cCCCCCcCCHHHHHHHhC------CCeEEEEEECCccccc---CChhHHHHHHHHHHHHHHHHHhcCCcEEEEECC
Q 005554 52 KQDLRVDDHLGLVAASKY------QAVVPLYVFDHRILSR---YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGR 118 (691)
Q Consensus 52 r~dlRl~DN~aL~~A~~~------~~~~~~f~~~~~~~~~---~~~~~~~fl~~~l~~l~~~l~~~g~~l~~~~g~ 118 (691)
||--|+.-|+++..-.+. +-+.|+||.+...... .=+...+|=.+.|.+.-+++.++|++=+++.|-
T Consensus 1 ~R~RRlR~~~~~R~lv~Et~l~~~dlI~PlFv~e~~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~~v~lFgv 76 (320)
T cd04823 1 TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSIDELLKEAEEAVDLGIPAVALFPV 76 (320)
T ss_pred CCCcccCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 456688889999877643 2478999997633221 112344455688888888999999998888776
No 354
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=20.63 E-value=1.2e+02 Score=29.10 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCcEEEE
Q 005554 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKATSVFA 137 (691)
Q Consensus 96 ~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~ 137 (691)
.+..++=+.|++.|.++.++.+.....+..+++..++..++.
T Consensus 88 ~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~ 129 (219)
T TIGR00338 88 EGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFA 129 (219)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEe
Confidence 344555555566666666666666666666666666655543
No 355
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=20.30 E-value=5.3e+02 Score=27.33 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=59.0
Q ss_pred CeEEEEcCCCC-------ChHHHHHHHHHHhcCCCEEEEeCCCCCcCCCCCCcCCCHHHHHHHHHHHHHHhCCcCEEEEE
Q 005554 428 PAILLVHGFGA-------FLEHYRDNIYDIADGGNRVWAITLLGFGRSEKPNIVYTELMWSELLRDFTVEVVGEPVHLIG 500 (691)
Q Consensus 428 p~VlliHG~~~-------~~~~~~~~~~~L~~~G~~Vi~~D~~G~G~S~~~~~~~s~~~~a~dl~~ll~~l~~~~v~lvG 500 (691)
..||++||-.. +.+.|..+++.+.++| .+-.+|..-+|.-++ +++-+.-++.++... +-.+|.
T Consensus 172 ~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~-lip~~D~AYQGF~~G------leeDa~~lR~~a~~~---~~~lva 241 (396)
T COG1448 172 GSVVLLHGCCHNPTGIDPTEEQWQELADLIKERG-LIPFFDIAYQGFADG------LEEDAYALRLFAEVG---PELLVA 241 (396)
T ss_pred CCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC-Ceeeeehhhhhhccc------hHHHHHHHHHHHHhC---CcEEEE
Confidence 46999998543 4689999999999885 566778766665432 444455555555443 238888
Q ss_pred eChhHHHHHHHHHhCccccceEEEecCC
Q 005554 501 NSIGGYFVAIVACLWPAVVKSVVLINSA 528 (691)
Q Consensus 501 hS~GG~ial~~A~~~P~~V~~lVll~~~ 528 (691)
.|+.-..+ .|-+||-++++++..
T Consensus 242 ~S~SKnfg-----LYgERVGa~~vva~~ 264 (396)
T COG1448 242 SSFSKNFG-----LYGERVGALSVVAED 264 (396)
T ss_pred ehhhhhhh-----hhhhccceeEEEeCC
Confidence 88765554 477899999998753
No 356
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=20.07 E-value=4.4e+02 Score=31.92 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCc
Q 005554 96 FALEDLRKSLKEQGSDLMIRFGRVENVIRELVEEVKAT 133 (691)
Q Consensus 96 ~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~ 133 (691)
+...+.=++|++.|+...++.||....-..++++.|+.
T Consensus 553 ~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 553 ETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 55666667788899999999999999999999999996
Done!