Query 005554
Match_columns 691
No_of_seqs 515 out of 3393
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 18:39:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005554.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2060-2064//hhsearch_pdb/005554hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fy4_A 6-4 photolyase; DNA rep 1.0 1 1 344.6 19.0 254 43-360 3-282 (537)
2 1np7_A DNA photolyase; protein 1.0 1 1 333.8 26.7 255 45-363 6-277 (489)
3 2j4d_A Cryptochrome 3, cryptoc 1.0 1 1 333.8 27.5 267 33-363 28-313 (525)
4 3tvs_A Cryptochrome-1; circadi 1.0 1 1 331.2 18.4 257 45-361 4-288 (538)
5 1owl_A Photolyase, deoxyribodi 1.0 1 1 331.1 24.3 248 44-361 2-266 (484)
6 1dnp_A DNA photolyase; DNA rep 1.0 1 1 327.2 18.9 243 46-362 2-261 (471)
7 2e0i_A 432AA long hypothetical 1.0 1 1 321.4 16.9 226 46-356 2-234 (440)
8 1u3d_A Cryptochrome 1 apoprote 1.0 1 1 320.3 21.6 251 44-360 11-272 (509)
9 2wq7_A RE11660P; lyase-DNA com 1.0 1 1 320.2 20.1 255 46-361 30-308 (543)
10 2j07_A Deoxyribodipyrimidine p 1.0 1 1 317.2 24.5 232 46-360 3-234 (420)
No 1
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=344.55 Aligned_cols=254 Identities=20% Similarity=0.270 Sum_probs=199.1
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHC-CCEEEEEEECCCCCC-----------CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 987379998399887699989998838-983999997784202-----------27964899999999999999984599
Q 005554 43 RSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILS-----------RYSNEMLELVIFALEDLRKSLKEQGS 110 (691)
Q Consensus 43 ~~~~~l~Wfr~dlRl~DN~aL~~A~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~f~~~~l~~l~~~l~~~g~ 110 (691)
+.+++|||||||||++||+||.+|++. .+|+||||+||.++. ..+++|++||++||.+|+++|+++|+
T Consensus 3 ~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~ 82 (537)
T 3fy4_A 3 TGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGS 82 (537)
T ss_dssp -CCEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88707999488865102199999996699779999807144223432222345667899999999999999999998599
Q ss_pred CEEEEECCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCC-----CCCC
Q ss_conf 28999878699999999980986899934148349999999999976137779975267617630015898-----9999
Q 005554 111 DLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL-----NDLP 185 (691)
Q Consensus 111 ~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~-----~~~~ 185 (691)
+|+++.|++.++|.+|+++++|++|++|.+|++++++||.+|++.|.+.|| .++.+++++|++|+++ +++|
T Consensus 83 ~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI----~~~~~~~~~L~~p~~v~~~~~~~~y 158 (537)
T 3fy4_A 83 RLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGV----EVFSPVSHTLFNPAHIIEKNGGKPP 158 (537)
T ss_dssp CCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTC----EEECCCCSSSSCHHHHHHHTSSSCC
T ss_pred CEEEEECCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC----EEEEECCCEEECHHHCCCCCCCCCC
T ss_conf 469997788999999999739998999166368899999999999887698----6999648779746660168999988
Q ss_pred CCHHHHHHHCCCCC---CCC-CCC-CCCCCCC--CCCCCCCCCHHHHHHHHCCCCCHHCHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 46055885012568---997-899-7567767--8899999995653221015952000023342036503466677532
Q 005554 186 VSHNEFRKLQRPLT---SPI-LPP-TLAGAKL--EADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSK 258 (691)
Q Consensus 186 ~~~~~f~~~~~~~~---~p~-~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~~~~ 258 (691)
++||+|++++.... .|+ +.| .+++.+. ......+|.+++++....
T Consensus 159 ~vftpf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p~l~~l~~~~~---------------------------- 210 (537)
T 3fy4_A 159 LSYQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDD---------------------------- 210 (537)
T ss_dssp SSHHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGG----------------------------
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC----------------------------
T ss_conf 7647899999862577677777633478852113234445776776388865----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 04555566788999632357861001688723057168899999999842278--9881699999851002799986433
Q 005554 259 LGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGT--VRDDWQELQEKLRNAESRDGASFAT 336 (691)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~--~~~~Y~~~r~~~~~~~~~~~~~~tS 336 (691)
.. .....|.|||++|+++|++|+ .+ .+..|++.||. +..++.++||
T Consensus 211 ------------------~~------~~~~~~~~Ge~~A~~~L~~Fl----~~~~~l~~Y~~~rd~----p~~~~~~~tS 258 (537)
T 3fy4_A 211 ------------------EQ------ADWTPFRGGESEALKRLTKSI----SDKAWVANFEKPKGD----PSAFLKPATT 258 (537)
T ss_dssp ------------------GS------SCCCSCCCSHHHHHHHHHHHT----CCHHHHHTCCGGGCC----TTCCSSCSSC
T ss_pred ------------------CC------CCCCCCCCCHHHHHHHHHHHH----HCCHHHHHHCCCCCC----CCCCCCCCCC
T ss_conf ------------------54------445788963999999999998----474377664531357----4225788871
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 334322125564257889999875
Q 005554 337 LFGPALCLGIISRRGVHYEAIKFE 360 (691)
Q Consensus 337 ~lSpyl~~g~~s~~~~~~~~~~~~ 360 (691)
+|||||+||+||+|+|++.+.+..
T Consensus 259 ~LSpyL~~G~lS~r~v~~~~~~~~ 282 (537)
T 3fy4_A 259 VMSPYLKFGCLSSRYFYQCLQNIY 282 (537)
T ss_dssp CCHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CCCHHHHCCCCCHHHHHHHHHHHH
T ss_conf 677777189758999999999998
No 2
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=1.00 E-value=1 Score=333.81 Aligned_cols=255 Identities=24% Similarity=0.388 Sum_probs=203.4
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHC-CCEEEEEEECCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 7379998399887699989998838-983999997784202-------27964899999999999999984599289998
Q 005554 45 GSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILS-------RYSNEMLELVIFALEDLRKSLKEQGSDLMIRF 116 (691)
Q Consensus 45 ~~~l~Wfr~dlRl~DN~aL~~A~~~-~~~~~~~~~~~~~~~-------~~~~~~~~f~~~~l~~l~~~l~~~g~~l~~~~ 116 (691)
+++|||||+|||++||+||.+|++. .+++||||+||.++. ..+++|++|+++||++|+++|+++|++|+++.
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~ 85 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTT 85 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 84799959987712379999998369978999997714644443356777889999999999999999998799179997
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCC----CCCCCCHHHHH
Q ss_conf 78699999999980986899934148349999999999976137779975267617630015898----99994605588
Q 005554 117 GRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFR 192 (691)
Q Consensus 117 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~f~ 192 (691)
|++.++|.+|++++++++|++|.+|+++++++|.+|++.|.+.|| +++.+++++|++|+++ +++|++|++|+
T Consensus 86 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi----~~~~~~~~~l~~~~~~~~~~g~~~~vft~F~ 161 (489)
T 1np7_A 86 GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGI----EAKGYWGSTLCHPEDLPFSIQDLPDLFTKFR 161 (489)
T ss_dssp SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTC----EEEEECCSSSSCGGGSSSCGGGCCSSHHHHH
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC----EEEEECCCEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 787999999999859988999354687899999999999886597----6999458856573212468999873199999
Q ss_pred HHCC-C---CCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5012-5---68997899-75677678899999995653221015952000023342036503466677532045555667
Q 005554 193 KLQR-P---LTSPILPP-TLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNL 267 (691)
Q Consensus 193 ~~~~-~---~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~~~~~~~~~~~~~ 267 (691)
+++. . +..|++.| .+++.+.......+|.+++++..
T Consensus 162 ~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------- 202 (489)
T 1np7_A 162 KDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQI--------------------------------------- 202 (489)
T ss_dssp HHHHTTTCCCCCCCCCCSCCCCCCCCCCCCCCCCGGGSCCC---------------------------------------
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC---------------------------------------
T ss_conf 99987326877788983124676532345678877663888---------------------------------------
Q ss_pred CCCCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999632357861001688723057168899999999842278988169999985100279998643333432212556
Q 005554 268 NNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGII 347 (691)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~lSpyl~~g~~ 347 (691)
. ........|+|||++|+++|++|+. ..+++..|++.||. .++.++||+|||||+||+|
T Consensus 203 -----------~--~~~~~~~~~~~Ge~~A~~~L~~Fl~--~~~~l~~Y~~~Rd~------~~~~~~tS~LSpyL~~G~l 261 (489)
T 1np7_A 203 -----------N--FDHRSVLAFQGGETAGLARLQDYFW--HGDRLKDYKETRNG------MVGADYSSKFSPWLALGCL 261 (489)
T ss_dssp -----------C--CCTTSSCCCCCSHHHHHHHHHHHHT--TSCCGGGHHHHTTC------CSSSTTSCCCHHHHHTTSS
T ss_pred -----------C--CCCCCCCCCCCCHHHHHHHHHHHHH--CCHHHHHHHHCCCC------CCCCCCCCCCCHHHCCCCC
T ss_conf -----------7--6733367779749999999999985--05057652003568------7555688574753538877
Q ss_pred CHHHHHHHHHHHHHHC
Q ss_conf 4257889999875321
Q 005554 348 SRRGVHYEAIKFEKER 363 (691)
Q Consensus 348 s~~~~~~~~~~~~~~~ 363 (691)
|+|+|++.+.++++.+
T Consensus 262 Spr~v~~~~~~~~~~~ 277 (489)
T 1np7_A 262 SPRFIYQEVKRYEQER 277 (489)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 7999999999986413
No 3
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=1.00 E-value=1 Score=333.77 Aligned_cols=267 Identities=28% Similarity=0.477 Sum_probs=205.3
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHC-CCEEEEEEECCCCCC--------CCCHHHHHHHHHHHHHHHH
Q ss_conf 7887545799987379998399887699989998838-983999997784202--------2796489999999999999
Q 005554 33 SPTAAATSKGRSGSAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILS--------RYSNEMLELVIFALEDLRK 103 (691)
Q Consensus 33 ~~~~~~~~~~~~~~~l~Wfr~dlRl~DN~aL~~A~~~-~~~~~~~~~~~~~~~--------~~~~~~~~f~~~~l~~l~~ 103 (691)
||+....+.+..+++|+|||+|||++||+||.+|++. .+|+||||+|+.++. ..+++|++|+++||++|++
T Consensus 28 ~~~~~~~~~~~~~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~ 107 (525)
T 2j4d_A 28 LPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRK 107 (525)
T ss_dssp CSCCTTCCCTTCCEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 96444566899975999969986702319999999469968999997735643444345787789999999999999999
Q ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCC--CCCCCCEEEEECCCEECCCCC
Q ss_conf 998459928999878699999999980986899934148349999999999976137--779975267617630015898
Q 005554 104 SLKEQGSDLMIRFGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVS--LVDGKPKICLWQTPFYDIKNL 181 (691)
Q Consensus 104 ~l~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~v~~~l~~~~--i~~~~~~~~~~~~~l~~~~~~ 181 (691)
+|+++|++|+++.|++.++|.+|++++++++|++|.+|+++++++|.+|++.|.+.| | +++.+++++|++|+++
T Consensus 108 ~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i----~~~~~~~~~L~~p~~v 183 (525)
T 2j4d_A 108 NLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNST----KLELIWGSTMYHKDDL 183 (525)
T ss_dssp HHHHTTCCCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSC----EEEEECCSCSSCGGGS
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCE----EEEEECCCEEECCCCC
T ss_conf 999769968999678799999999984998899906678889999999999998659946----8999668878751112
Q ss_pred ----CCCCCCHHHHHHHCCC---CCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHCHHHHHHCCCCHHHHHH
Q ss_conf ----9999460558850125---68997899-756776788999999956532210159520000233420365034666
Q 005554 182 ----NDLPVSHNEFRKLQRP---LTSPILPP-TLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILT 253 (691)
Q Consensus 182 ----~~~~~~~~~f~~~~~~---~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~l~ 253 (691)
++++++|++|++++.+ +..|++.| .++..+.......++.++++++
T Consensus 184 ~~~~g~~~~vft~F~r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~l~~l~~-------------------------- 237 (525)
T 2j4d_A 184 PFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGV-------------------------- 237 (525)
T ss_dssp SSCGGGCCSSHHHHHHHHHHHCCCCCCCCBCSCCCCCCCCSCCCCCCCTTTTTC--------------------------
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC--------------------------
T ss_conf 456798741399999999975688888897101477643345567999788189--------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 77532045555667889996323578610016887230571688999999998422789881699999851002799986
Q 005554 254 DKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGAS 333 (691)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~ 333 (691)
+.. . ......|.|||++|+++|++|+. +.+++..|++.||. .++.+
T Consensus 238 ------------------------~~~-~-~~~~~~~~~Ge~~A~~~L~~Fl~--~~~~l~~Y~~~Rd~------~~~~~ 283 (525)
T 2j4d_A 238 ------------------------EPQ-E-VTRGMRFVGGESAGVGRVFEYFW--KKDLLKVYKETRNG------MLGPD 283 (525)
T ss_dssp ------------------------CCC-C-CCSEEEECCSHHHHHHHHHHHHT--TSCCGGGHHHHTTC------CSSST
T ss_pred ------------------------CCC-C-CCCCCCCCCCHHHHHHHHHHHHH--HCCHHHHHCCCCCC------CCCCC
T ss_conf ------------------------865-6-66567789759999999999985--27047660456898------54233
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 433334322125564257889999875321
Q 005554 334 FATLFGPALCLGIISRRGVHYEAIKFEKER 363 (691)
Q Consensus 334 ~tS~lSpyl~~g~~s~~~~~~~~~~~~~~~ 363 (691)
+||+|||||+||+||+|+|++.+.++.+..
T Consensus 284 ~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~ 313 (525)
T 2j4d_A 284 YSTKFSPWLAFGCISPRFIYEEVQRYEKER 313 (525)
T ss_dssp TSCCCHHHHHTTSSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 677767645388677999999999985313
No 4
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=1.00 E-value=1 Score=331.22 Aligned_cols=257 Identities=18% Similarity=0.252 Sum_probs=195.8
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHC-C---CEEEEEEECCCCCCC--CCHHHHHHHHHHHHHHHHHHHHC---CCCEEEE
Q ss_conf 7379998399887699989998838-9---839999977842022--79648999999999999999845---9928999
Q 005554 45 GSAVIWFKQDLRVDDHLGLVAASKY-Q---AVVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQ---GSDLMIR 115 (691)
Q Consensus 45 ~~~l~Wfr~dlRl~DN~aL~~A~~~-~---~~~~~~~~~~~~~~~--~~~~~~~f~~~~l~~l~~~l~~~---g~~l~~~ 115 (691)
+.+|||||||||++||+||.+|++. . +|+||||+||.++.. .+++|++||++||.+|+++|+++ |++|+|+
T Consensus 4 ~~~lvWFRrDLRl~DN~AL~~A~~~~~~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v~ 83 (538)
T 3tvs_A 4 GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVF 83 (538)
T ss_dssp CEEEEEESSCCCSSSCHHHHTTTGGGTTTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 75899957886501239999999717778977999964834430578778999999999999999999864289858999
Q ss_pred ECCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCC-----CCCCCCHHH
Q ss_conf 878699999999980986899934148349999999999976137779975267617630015898-----999946055
Q 005554 116 FGRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL-----NDLPVSHNE 190 (691)
Q Consensus 116 ~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~ 190 (691)
+|++.++|.+|+++++|++|++|++|++++++||.+|++.|.+.|| .++++++++|++|+.+ +.+|.+|++
T Consensus 84 ~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi----~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~ 159 (538)
T 3tvs_A 84 EGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNI----DFVEKVSHTLWDPQLVIETNGGIPPLTYQM 159 (538)
T ss_dssp ESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSC----CCCEECCSSSSCTTHHHHHTTTSCCCSHHH
T ss_pred ECCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC----EEEEECCCEEECHHHCCCCCCCCCCCCHHH
T ss_conf 6888999999999759998998167788899999999998876795----489966988877423056889988733199
Q ss_pred HHHHCCCCCC---CCCCCCCCCCCC-CCCC---------CCCCCHHHHHHHHCCCCCHHCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8850125689---978997567767-8899---------99999565322101595200002334203650346667753
Q 005554 191 FRKLQRPLTS---PILPPTLAGAKL-EADW---------GPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLS 257 (691)
Q Consensus 191 f~~~~~~~~~---p~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~~~ 257 (691)
|++++..+.. |++.|....... .... ..+|.+++++.
T Consensus 160 f~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~------------------------------ 209 (538)
T 3tvs_A 160 FLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNV------------------------------ 209 (538)
T ss_dssp HHHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSC------------------------------
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC------------------------------
T ss_conf 99999860788788888420014545688421112122457898777289------------------------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCC
Q ss_conf 20455556678899963235786100168872305716889999999984227898816999998510027999-86433
Q 005554 258 KLGKRSKRNLNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDG-ASFAT 336 (691)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~-~~~tS 336 (691)
.+..........|.|||++|+++|++|+..-..+.+..|.+.||. .++ .++||
T Consensus 210 --------------------~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~~~l~~y~~~r~~------~~~~~~~tS 263 (538)
T 3tvs_A 210 --------------------YGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQA------LPNIHDSPK 263 (538)
T ss_dssp --------------------CCCCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCCTTTT------SCCSSCCSC
T ss_pred --------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCC
T ss_conf --------------------852123455678897799999999999876315367541400137------543458974
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3343221255642578899998753
Q 005554 337 LFGPALCLGIISRRGVHYEAIKFEK 361 (691)
Q Consensus 337 ~lSpyl~~g~~s~~~~~~~~~~~~~ 361 (691)
+|||||+||+||+|+|++.+.+...
T Consensus 264 ~LSpyL~~G~lS~r~v~~~~~~~~~ 288 (538)
T 3tvs_A 264 SMSAHLRFGCLSVRRFYWSVHDLFK 288 (538)
T ss_dssp CCHHHHHTTSSCHHHHHHHHHHHTC
T ss_pred CCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 7877881887689999999999986
No 5
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=1.00 E-value=1 Score=331.09 Aligned_cols=248 Identities=22% Similarity=0.334 Sum_probs=199.2
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHH-CCCEEEEEEECCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 8737999839988769998999883-8983999997784202--279648999999999999999845992899987869
Q 005554 44 SGSAVIWFKQDLRVDDHLGLVAASK-YQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVE 120 (691)
Q Consensus 44 ~~~~l~Wfr~dlRl~DN~aL~~A~~-~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~l~~l~~~l~~~g~~l~~~~g~~~ 120 (691)
++++|+|||+|||++||+||.+|++ .++|+||||+||.++. ..+++|++|+++||++|+++|+++|++|+++.|++.
T Consensus 2 ~~~~l~WfrrDLRl~Dn~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~g~~~ 81 (484)
T 1owl_A 2 AAPILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQ 81 (484)
T ss_dssp -CCEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEESCHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 86089997998770120999999826998899999761564277878899999999999999999987994799958889
Q ss_pred HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCC----CCCCCCHHHHHHHCC
Q ss_conf 9999999980986899934148349999999999976137779975267617630015898----999946055885012
Q 005554 121 NVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQR 196 (691)
Q Consensus 121 ~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~f~~~~~ 196 (691)
++|.+|++++++++|++|.+|++++++||.+|++.|.+.|| +++.+++++|++|+++ |++|.+|++|++++.
T Consensus 82 ~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi----~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~ 157 (484)
T 1owl_A 82 HLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGI----RAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQ 157 (484)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTC----EEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC----EEEEECCCEEECHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999859988999066784699999999998887696----79996588897444513567997466699999999
Q ss_pred CCCC--CCCCCC-CCCCCCC------CC-CCCCCCHHHHHHHHCCCCCHHCHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 5689--978997-5677678------89-999999565322101595200002334203650346667753204555566
Q 005554 197 PLTS--PILPPT-LAGAKLE------AD-WGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRN 266 (691)
Q Consensus 197 ~~~~--p~~~~~-~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~~~~~~~~~~~~ 266 (691)
+... |++.|. .+..... .. ..+++..+.++
T Consensus 158 ~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------------------------------- 197 (484)
T 1owl_A 158 AQPKPTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLG---------------------------------------- 197 (484)
T ss_dssp HSCCCCCCCCCCSCCCCCHHHHHHHGGGCCSSCCCTGGGT----------------------------------------
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC----------------------------------------
T ss_conf 7468878899622356430001245654457899877749----------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78899963235786100168872305716889999999984227898816999998510027999864333343221255
Q 005554 267 LNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGI 346 (691)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~lSpyl~~g~ 346 (691)
.+. .. . . .|+|||++|+++|++|+ .+++..|++.|| .|+.++||+|||||+||+
T Consensus 198 ----------~~~--~~-~-~-~~~~Ge~~A~~~L~~Fl----~~~l~~Y~~~rd-------~p~~~~tS~LSpyL~~G~ 251 (484)
T 1owl_A 198 ----------FDW--DG-G-F-PVEPGETAAIARLQEFC----DRAIADYDPQRN-------FPAEAGTSGLSPALKFGA 251 (484)
T ss_dssp ----------CCC--CS-C-C-SSCSSHHHHHHHHHHHH----HTGGGGHHHHTT-------CTTSCCSCCCHHHHHTTS
T ss_pred ----------CCC--CC-C-C-CCCCCHHHHHHHHHHHH----HHHHHHHCCCCC-------CCCCCCCCCCCHHHCCCC
T ss_conf ----------986--55-5-7-68987899999999999----989988450157-------877668767667671787
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 642578899998753
Q 005554 347 ISRRGVHYEAIKFEK 361 (691)
Q Consensus 347 ~s~~~~~~~~~~~~~ 361 (691)
||+|+|++.+.+..+
T Consensus 252 lSpr~v~~~~~~~~~ 266 (484)
T 1owl_A 252 IGIRQAWQAASAAHA 266 (484)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC
T ss_conf 679999999999730
No 6
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=1.00 E-value=1 Score=327.15 Aligned_cols=243 Identities=18% Similarity=0.252 Sum_probs=195.0
Q ss_pred CEEEEECCCCCCCCCHHHHHHHH--CCCEEEEEEECCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE----EC
Q ss_conf 37999839988769998999883--8983999997784202--2796489999999999999998459928999----87
Q 005554 46 SAVIWFKQDLRVDDHLGLVAASK--YQAVVPLYVFDHRILS--RYSNEMLELVIFALEDLRKSLKEQGSDLMIR----FG 117 (691)
Q Consensus 46 ~~l~Wfr~dlRl~DN~aL~~A~~--~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~l~~l~~~l~~~g~~l~~~----~g 117 (691)
++|||||||||++||+||.+|++ .++|+||||+||.++. ..+++|++|+++||++|+++|+++|++|+++ .|
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g 81 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 81 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 78999699876231399999983789988999998745540678788999999999999999999879907999706779
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCC----CCCCCCHHHHHH
Q ss_conf 8699999999980986899934148349999999999976137779975267617630015898----999946055885
Q 005554 118 RVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRK 193 (691)
Q Consensus 118 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~f~~ 193 (691)
++.++|.+|++++++++|++|.+|++++++||.+|++.|.+ | +++.+++++|++|+++ |++|.+|++|++
T Consensus 82 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~--i----~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~ 155 (471)
T 1dnp_A 82 ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN--V----VCEGFDDSVILPPGAVMTGNHEMYKVFTPFKN 155 (471)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT--S----EEEEECCSSSSCTTSSCCTTSCCCSSHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCC--C----EEEEECCCEEECHHHCCCCCCCCCCCHHHHHH
T ss_conf 98999999999849988999324481188999999998417--6----79996488898143314578998722489999
Q ss_pred HCCCC-----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 01256-----8997899756776788999999956532210159520000233420365034666775320455556678
Q 005554 194 LQRPL-----TSPILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLN 268 (691)
Q Consensus 194 ~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~~~~~~~~~~~~~~ 268 (691)
++... +.|++.|.....+. .....++. ++
T Consensus 156 ~~~~~l~~~~p~~~~~p~~~~~~~-~~~~~~~~---l~------------------------------------------ 189 (471)
T 1dnp_A 156 AWLKRLREGMPECVAAPKVRSSGS-IEPSPSIT---LN------------------------------------------ 189 (471)
T ss_dssp HHHHHHHTCCCCCCCCCCCCTTCC-CCCCCCCC---CC------------------------------------------
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCC---CC------------------------------------------
T ss_conf 999860446777789965567654-46777754---57------------------------------------------
Q ss_pred CCCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89996323578610016887230571688999999998422789881699999851002799986433334322125564
Q 005554 269 NQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIIS 348 (691)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~lSpyl~~g~~s 348 (691)
.+. .......|+|||++|+++|++|+ .+++..|++.|| .|+.++||+|||||+||+||
T Consensus 190 --------~~~---~~~~~~~~~~Ge~~A~~~L~~Fl----~~~l~~Y~~~rd-------~p~~~~tS~LSpyL~~G~lS 247 (471)
T 1dnp_A 190 --------YPR---QSFDTAHFPVEEKAAIAQLRQFC----QNGAGEYEQQRD-------FPAVEGTSRLSASLATGGLS 247 (471)
T ss_dssp --------SCC---CCCCTTTSCCSHHHHHHHHHHHH----HTHHHHHHHHTT-------CTTSCCSCCCHHHHHHTSSC
T ss_pred --------CCC---CCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHCCC-------CCCCCCCCCCCHHHCCCCCC
T ss_conf --------885---43322357977899999999999----989988534058-------86756877778767078767
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 25788999987532
Q 005554 349 RRGVHYEAIKFEKE 362 (691)
Q Consensus 349 ~~~~~~~~~~~~~~ 362 (691)
+|+|++.+.+..+.
T Consensus 248 pr~v~~~~~~~~~~ 261 (471)
T 1dnp_A 248 PRQCLHRLLAEQPQ 261 (471)
T ss_dssp HHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999997413
No 7
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=1.00 E-value=1 Score=321.39 Aligned_cols=226 Identities=17% Similarity=0.171 Sum_probs=188.2
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHC-CCEEEEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 379998399887699989998838-9839999977842022---796489999999999999998459928999878699
Q 005554 46 SAVIWFKQDLRVDDHLGLVAASKY-QAVVPLYVFDHRILSR---YSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVEN 121 (691)
Q Consensus 46 ~~l~Wfr~dlRl~DN~aL~~A~~~-~~~~~~~~~~~~~~~~---~~~~~~~f~~~~l~~l~~~l~~~g~~l~~~~g~~~~ 121 (691)
.+|||||||||++||+||.+|++. .+|+||||+||.++.. .+++|++|+++||++|+++|+++|++|+++.|++.+
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~ 81 (440)
T 2e0i_A 2 DCIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELRKKGSRLNVFFGEAEK 81 (440)
T ss_dssp EEEEEESSCCCSSSCHHHHHHHHHSSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEESCHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 88999589976002599999984699789999967055304776789999999999999999999769969999788899
Q ss_pred HHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHCCCC--C
Q ss_conf 99999998098689993414834999999999997613777997526761763001589899994605588501256--8
Q 005554 122 VIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPL--T 199 (691)
Q Consensus 122 ~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~--~ 199 (691)
+|.+|++ ++++|++|.+|++++++||.+|++.|.+.|| +++.++++++++|+++ +|++|++|++++... .
T Consensus 82 ~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi----~~~~~~~~~l~~~~~~--~y~vftpf~~~~~~~~~~ 153 (440)
T 2e0i_A 82 VVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGI----EFKAYEDYLLTPKSLF--HHRNFTSFYNEVSKVKVR 153 (440)
T ss_dssp HHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTC----EEEEECCSCSSCGGGC--CCSSHHHHHHHHTTSCCC
T ss_pred HHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHHHHHCCC----EEEEECCCEEECCCCC--CCCCCCHHHHHHHHHCCC
T ss_conf 9999983--8998999156576789999999999887692----6999668789764636--754475999999982346
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9-978997567767889999999565322101595200002334203650346667753204555566788999632357
Q 005554 200 S-PILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLD 278 (691)
Q Consensus 200 ~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (691)
. +.+.|. +. ++|..+.+. ..| .
T Consensus 154 ~p~~~~~~----~~-----~~~~p~~~~----~lp-------------------------------------------~- 176 (440)
T 2e0i_A 154 EPETMEGS----FD-----VTDSSMNVD----FLL-------------------------------------------T- 176 (440)
T ss_dssp CCCCCCCC----BC-----CCSSSBCGG----GGG-------------------------------------------G-
T ss_pred CCCCCCCC----CC-----CCCCCCHHH----HCC-------------------------------------------C-
T ss_conf 56667897----55-----589940122----187-------------------------------------------6-
Q ss_pred CCCEECCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 861001688723057168899999999842278988169999985100279998643333432212556425788999
Q 005554 279 KSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEA 356 (691)
Q Consensus 279 ~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~lSpyl~~g~~s~~~~~~~~ 356 (691)
....++|||++|+++|+ |+ .+++..| +.|| .|+.++||+|||||+||+||+|+|++.+
T Consensus 177 -------~~~~~~~Ge~~A~~~L~-Fl----~~~l~~Y-~~rd-------~p~~~~tS~LSPyL~~G~lSpr~v~~~~ 234 (440)
T 2e0i_A 177 -------FKKIESPLFRGGRREGL-YL----LHRNVDF-RRRD-------YPAENNNYRLSPHLKFGTISMREAYYTQ 234 (440)
T ss_dssp -------TCCCCCTTCCCSHHHHH-HH----HTCCCCG-GGTT-------CTTTTCCCCCHHHHHTTSSCHHHHHHHS
T ss_pred -------CCCCCCCCHHHHHHHHH-HH----HHHHHCC-CCCC-------CCCCCCCCCCCHHHHCCCCCHHHHHHHH
T ss_conf -------33579977999999999-87----7565157-7678-------7665588885676707987899999983
No 8
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=1.00 E-value=1 Score=320.30 Aligned_cols=251 Identities=17% Similarity=0.200 Sum_probs=193.5
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCC--CHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-CCHH
Q ss_conf 8737999839988769998999883898399999778420227--964899999999999999984599289998-7869
Q 005554 44 SGSAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRY--SNEMLELVIFALEDLRKSLKEQGSDLMIRF-GRVE 120 (691)
Q Consensus 44 ~~~~l~Wfr~dlRl~DN~aL~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~~~l~~l~~~l~~~g~~l~~~~-g~~~ 120 (691)
++.+|+|||+|||++||+||.+|++.++++||||+||.++..+ +..+..|+++||++|+++|+++|++|+++. |++.
T Consensus 11 ~~~~l~WfrrDLRl~DN~aL~~A~~~~~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~ 90 (509)
T 1u3d_A 11 GGCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSV 90 (509)
T ss_dssp --CEEEEESSCCCSTTCHHHHHHHHHSCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf 98089997998761022999999867998999997730104578406899999999999999999779918997689989
Q ss_pred HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCC----CCCCCCHHHHHHHCC
Q ss_conf 9999999980986899934148349999999999976137779975267617630015898----999946055885012
Q 005554 121 NVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNL----NDLPVSHNEFRKLQR 196 (691)
Q Consensus 121 ~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~f~~~~~ 196 (691)
++|.+|++++++++|++|.+|+|++..||.+|++.|.+.+| +++.+++++|++|+++ +++|++|++|++++.
T Consensus 91 ~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi----~~~~~~~~~l~~p~~v~~~~g~~~~vftpf~r~~~ 166 (509)
T 1u3d_A 91 ASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGI----AVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCL 166 (509)
T ss_dssp HHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTC----EEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC----EEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999859988999054689999999999999987696----79997787897687566779997144799999998
Q ss_pred CCC-CC---CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 568-99---78997567767889999999565322101595200002334203650346667753204555566788999
Q 005554 197 PLT-SP---ILPPTLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHS 272 (691)
Q Consensus 197 ~~~-~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 272 (691)
... .| .+.|. ..+. .....++.++++. ..... +.
T Consensus 167 ~~~~~~~~~~~~p~--~~~~--~~~~~~~~~~l~~---------~~~~~--~~--------------------------- 204 (509)
T 1u3d_A 167 SMPYDPESPLLPPK--KIIS--GDVSKCVADPLVF---------EDDSE--KG--------------------------- 204 (509)
T ss_dssp TCSSCCCCCCCCCS--CCCB--TTGGGSSCCCCCC---------CCHHH--HH---------------------------
T ss_pred HCCCCCCCCCCCCC--CCCC--CCCCCCCHHHHCC---------CCCCC--CC---------------------------
T ss_conf 46479887778743--3576--5568899667077---------76444--42---------------------------
Q ss_pred CCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 63235786100168872305716889999999984227898816999998510027999864333343221255642578
Q 005554 273 PRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGV 352 (691)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~lSpyl~~g~~s~~~~ 352 (691)
........|+|||++|+++|++|+ .+++..|++.|| .|..++||+|||||+||+||+|+|
T Consensus 205 ---------~~~~~~~~~~~Ge~~A~~~L~~Fl----~~~l~~Y~~~Rd-------~p~~~~tS~LSPyL~~G~LSpR~v 264 (509)
T 1u3d_A 205 ---------SNALLARAWSPGWSNGDKALTTFI----NGPLLEYSKNRR-------KADSATTSFLSPHLHFGEVSVRKV 264 (509)
T ss_dssp ---------HHTTHHHHCCCSHHHHHHHHHHHH----TTGGGGTTTTTT-------CSSSTTSCCCHHHHHTTSSCHHHH
T ss_pred ---------HHHHCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHCCC-------CCCCCCCCCCCHHHCCCCCCHHHH
T ss_conf ---------133203567875799999999999----987776532047-------888778877774150698779999
Q ss_pred HHHHHHHH
Q ss_conf 89999875
Q 005554 353 HYEAIKFE 360 (691)
Q Consensus 353 ~~~~~~~~ 360 (691)
++.+.+..
T Consensus 265 ~~~~~~~~ 272 (509)
T 1u3d_A 265 FHLVRIKQ 272 (509)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999975
No 9
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=1.00 E-value=1 Score=320.20 Aligned_cols=255 Identities=19% Similarity=0.266 Sum_probs=195.8
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHC-CC------EEEEEEECCCCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 379998399887699989998838-98------39999977842022--7964899999999999999984599289998
Q 005554 46 SAVIWFKQDLRVDDHLGLVAASKY-QA------VVPLYVFDHRILSR--YSNEMLELVIFALEDLRKSLKEQGSDLMIRF 116 (691)
Q Consensus 46 ~~l~Wfr~dlRl~DN~aL~~A~~~-~~------~~~~~~~~~~~~~~--~~~~~~~f~~~~l~~l~~~l~~~g~~l~~~~ 116 (691)
.+|||||+|||++||+||.+|++. .+ |+||||+||.++.. .+++|++|+++||++|+++|+++|++|+++.
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~ 109 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVR 109 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 28999599867050899999997376546787189999977245415677889999999999999999998799589996
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCC-----CCCCCCCHHHH
Q ss_conf 7869999999998098689993414834999999999997613777997526761763001589-----89999460558
Q 005554 117 GRVENVIRELVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKN-----LNDLPVSHNEF 191 (691)
Q Consensus 117 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~f 191 (691)
|++.++|.+|++++++++|++|.+|+|+++.+|..|++.|.+.|| +++.+++++|++|++ .|++|++|++|
T Consensus 110 g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi----~~~~~~~~~l~~p~~v~~~~~g~~~~vft~F 185 (543)
T 2wq7_A 110 GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGV----RVETHCSHTIYNPELVIAKNLGKAPITYQKF 185 (543)
T ss_dssp SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTC----EEEEECCSSSSCHHHHHHHTTTSCCCSHHHH
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC----EEEEECCCEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 788999999999859998999367687799999999998887598----7999669788772100456699997648999
Q ss_pred HHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHH---HCCCCCHHCHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 850125689--9789975677678899999995653221---01595200002334203650346667753204555566
Q 005554 192 RKLQRPLTS--PILPPTLAGAKLEADWGPLPTFDELKEF---VNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRN 266 (691)
Q Consensus 192 ~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~a~~~l~~~~~~~~~~~~~~ 266 (691)
++++..+.. |++.| ..++. ...|....+... ....+ .++.+ .
T Consensus 186 ~~~~~~~~~~~p~~~p--~~~~~----~~~p~~~~~~~~~~~~~~~p-----------------~l~~l----~------ 232 (543)
T 2wq7_A 186 LGIVEQLKVPKVLGVP--EKLKN----MPTPPKDEVEQKDSAAYDCP-----------------TMKQL----V------ 232 (543)
T ss_dssp HHHHTTSCCCCCCCCC--CCCSS----CCCCCCCHHHHHCTTTTSCC-----------------CHHHH----C------
T ss_pred HHHHHHCCCCCCCCCC--HHCCC----CCCCCCCCCCCCCCCCCCCC-----------------CHHHC----C------
T ss_conf 9998870688898860--00365----55654223342222345788-----------------87772----8------
Q ss_pred CCCCCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHCCCCC--CCCCCCCCCCC
Q ss_conf 7889996323578610016887230571688999999998422789--8816999998510027999--86433334322
Q 005554 267 LNNQHSPRKRLDKSFFVTDKGNTVGGGTNAVLNALQAYLRYLEGTV--RDDWQELQEKLRNAESRDG--ASFATLFGPAL 342 (691)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~a~~~l~~fl~~~~~~~--~~~Y~~~r~~~~~~~~~~~--~~~tS~lSpyl 342 (691)
.+.. ......|+|||++|+++|++|+ .++ +..|++.|| .|. .++||+|||||
T Consensus 233 ----------~~~~---~~~~~~~~~Ge~~A~~~L~~Fl----~~~~~l~~Y~~~Rd-------~p~~~~~~tS~LSPyL 288 (543)
T 2wq7_A 233 ----------KRPE---ELGPNKFPGGETEALRRMEESL----KDEIWVARFEKPNT-------APNSLEPSTTVLSPYL 288 (543)
T ss_dssp ----------SCGG---GCCCCCSCCSHHHHHHHHHHHH----TCHHHHHHCCGGGS-------CSSCSSCSSCCCHHHH
T ss_pred ----------CCCC---CCCCCCCCCCHHHHHHHHHHHH----HCCHHHHHHCCCCC-------CCCCCCCCCCCCCHHH
T ss_conf ----------8854---3556888987999999999998----57716444330036-------8543445777767767
Q ss_pred CCCCCCHHHHHHHHHH-HHH
Q ss_conf 1255642578899998-753
Q 005554 343 CLGIISRRGVHYEAIK-FEK 361 (691)
Q Consensus 343 ~~g~~s~~~~~~~~~~-~~~ 361 (691)
+||+||+|+|++.+.+ +++
T Consensus 289 ~~G~LSpR~v~~~~~~~~~~ 308 (543)
T 2wq7_A 289 KFGCLSARLFNQKLKEIIKR 308 (543)
T ss_dssp HHTSSCHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHC
T ss_conf 07877899999999999740
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=1.00 E-value=1 Score=317.24 Aligned_cols=232 Identities=23% Similarity=0.268 Sum_probs=193.8
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Q ss_conf 37999839988769998999883898399999778420227964899999999999999984599289998786999999
Q 005554 46 SAVIWFKQDLRVDDHLGLVAASKYQAVVPLYVFDHRILSRYSNEMLELVIFALEDLRKSLKEQGSDLMIRFGRVENVIRE 125 (691)
Q Consensus 46 ~~l~Wfr~dlRl~DN~aL~~A~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~l~~~l~~~g~~l~~~~g~~~~~l~~ 125 (691)
++|+|||+|||++||+||.+|++.++|++|||+||.++.. +++|++|+++||++|+++|+++|++|+++.|++.++|.+
T Consensus 3 ~~l~WfrrDlRl~Dn~aL~~A~~~~~v~~vfi~d~~~~~~-~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g~~~~~l~~ 81 (420)
T 2j07_A 3 PLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLKT-TPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVPE 81 (420)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHTTSCEEEEEEECHHHHSS-CHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 0999937887722059999998579989999977755667-889999999999999999997799589995887999999
Q ss_pred HHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 99980986899934148349999999999976137779975267617630015898999946055885012568997899
Q 005554 126 LVEEVKATSVFAEEEVEYHLRQMMAIVDETLAKVSLVDGKPKICLWQTPFYDIKNLNDLPVSHNEFRKLQRPLTSPILPP 205 (691)
Q Consensus 126 l~~~~~~~~v~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~p~~~~ 205 (691)
|++++++++|++|.+|+++++++|.+|++.| +| +++.++++++++++. +++|.+|++|+|++..+..|++.|
T Consensus 82 l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i----~~~~~~~~~l~~~~~-~~~~~~~t~f~k~~~~~~~p~~~p 153 (420)
T 2j07_A 82 AARRLKAKAVYALTSHTPYGRYRDGRVREAL---PV----PLHLLPAPHLLPPDL-PRAYRVYTPFSRLYRGAAPPLPPP 153 (420)
T ss_dssp HHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SS----CEEEECCCCSSCTTC-SSCCSSHHHHHTTCCCCCCCCCCC
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHHC---CC----EEEEECCCEEECCCC-CCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 9998499889991566736799999999976---97----699967877873677-986532229999976126889996
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 75677678899999995653221015952000023342036503466677532045555667889996323578610016
Q 005554 206 TLAGAKLEADWGPLPTFDELKEFVNENPWKLEESWTLINNMSAETILTDKLSKLGKRSKRNLNNQHSPRKRLDKSFFVTD 285 (691)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (691)
.. . ++| .++.. .+ + . ..
T Consensus 154 ~~------~---~~p-~~~~~-----l~-----------------------------------~---------~----~~ 170 (420)
T 2j07_A 154 EA------L---PKG-PEEGE-----IP-----------------------------------R---------E----DP 170 (420)
T ss_dssp SS------C---CCC-CCCCC-----CC-----------------------------------C---------C----CC
T ss_pred CC------C---CCC-CCCCC-----CC-----------------------------------C---------C----CC
T ss_conf 44------5---798-75000-----88-----------------------------------7---------6----44
Q ss_pred CCCEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 887230571688999999998422789881699999851002799986433334322125564257889999875
Q 005554 286 KGNTVGGGTNAVLNALQAYLRYLEGTVRDDWQELQEKLRNAESRDGASFATLFGPALCLGIISRRGVHYEAIKFE 360 (691)
Q Consensus 286 ~~~~~~gGe~~a~~~l~~fl~~~~~~~~~~Y~~~r~~~~~~~~~~~~~~tS~lSpyl~~g~~s~~~~~~~~~~~~ 360 (691)
....|+|||++|+++|++|+ .+++..|++.|| .|+.++||+|||||+||+||+|+|++.+.+..
T Consensus 171 ~~~~~~~Ge~~A~~~L~~Fl----~~~l~~Y~~~rd-------~p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~ 234 (420)
T 2j07_A 171 GLPLPEPGEEAALAGLRAFL----EAKLPRYAEERD-------RLDGEGGSRLSPYFALGVLSPRLAAWEAERRG 234 (420)
T ss_dssp SSCCCCCSHHHHHHHHHHHH----HHTGGGHHHHTT-------CTTCTTSCCCHHHHHTTSSCHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHH----HHHHHHHHHCCC-------CCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH
T ss_conf 42347986999999999999----988866423157-------87766888866412688658999999999874
Done!