Query 005555
Match_columns 691
No_of_seqs 299 out of 2765
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 01:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2019 Metalloendoprotease HM 100.0 7E-108 2E-112 838.8 55.2 682 1-691 66-896 (998)
2 COG1026 Predicted Zn-dependent 100.0 5E-102 1E-106 843.7 54.2 683 1-691 34-866 (978)
3 PTZ00432 falcilysin; Provision 100.0 2E-93 4.2E-98 836.4 67.2 686 1-691 104-1010(1119)
4 KOG0961 Predicted Zn2+-depende 100.0 4.7E-53 1E-57 434.2 40.0 657 15-690 47-887 (1022)
5 PRK15101 protease3; Provisiona 100.0 5.3E-50 1.2E-54 477.2 48.8 613 10-681 70-819 (961)
6 TIGR02110 PQQ_syn_pqqF coenzym 100.0 2.1E-33 4.6E-38 310.4 27.4 293 364-682 4-305 (696)
7 PF08367 M16C_assoc: Peptidase 100.0 2.8E-33 6E-38 277.9 24.0 247 288-537 1-248 (248)
8 COG0612 PqqL Predicted Zn-depe 100.0 3.3E-33 7.2E-38 304.0 22.9 306 10-339 43-376 (438)
9 COG0612 PqqL Predicted Zn-depe 100.0 3.1E-33 6.7E-38 304.2 22.1 301 363-690 20-336 (438)
10 KOG0959 N-arginine dibasic con 100.0 4.1E-30 9E-35 286.0 45.6 615 8-678 52-814 (974)
11 COG1025 Ptr Secreted/periplasm 100.0 5.6E-30 1.2E-34 279.6 45.4 603 10-669 50-787 (937)
12 TIGR02110 PQQ_syn_pqqF coenzym 100.0 3.9E-32 8.5E-37 300.3 27.1 292 10-324 26-345 (696)
13 KOG0960 Mitochondrial processi 100.0 8.5E-32 1.8E-36 263.0 20.7 295 10-327 59-384 (467)
14 KOG0960 Mitochondrial processi 100.0 7.5E-30 1.6E-34 249.4 20.9 291 364-682 38-346 (467)
15 PRK15101 protease3; Provisiona 100.0 1E-27 2.2E-32 286.2 25.4 298 364-684 48-359 (961)
16 PTZ00432 falcilysin; Provision 99.9 2.2E-23 4.9E-28 245.9 21.4 285 365-680 97-450 (1119)
17 KOG2067 Mitochondrial processi 99.9 2.5E-23 5.5E-28 204.2 17.9 318 10-358 50-430 (472)
18 KOG2067 Mitochondrial processi 99.9 4.6E-22 9.9E-27 195.4 16.2 298 364-688 29-349 (472)
19 COG1025 Ptr Secreted/periplasm 99.8 1.8E-18 3.9E-23 190.0 21.5 293 364-679 28-333 (937)
20 PF00675 Peptidase_M16: Insuli 99.8 1.5E-19 3.3E-24 166.0 7.3 132 10-161 17-148 (149)
21 KOG0959 N-arginine dibasic con 99.8 1.7E-17 3.7E-22 185.9 23.1 284 364-668 32-326 (974)
22 PF00675 Peptidase_M16: Insuli 99.6 7.7E-15 1.7E-19 134.8 13.9 146 370-527 1-147 (149)
23 KOG2583 Ubiquinol cytochrome c 99.6 3.2E-14 6.8E-19 141.1 14.7 174 10-206 48-221 (429)
24 PF05193 Peptidase_M16_C: Pept 99.5 1.8E-13 3.8E-18 130.4 10.3 139 549-688 4-157 (184)
25 KOG2583 Ubiquinol cytochrome c 99.4 4.2E-11 9.2E-16 119.2 22.0 294 363-688 26-333 (429)
26 COG1026 Predicted Zn-dependent 99.2 1.7E-10 3.7E-15 128.4 17.7 281 365-678 27-342 (978)
27 PF05193 Peptidase_M16_C: Pept 99.0 1.8E-09 3.9E-14 102.6 9.9 156 167-325 1-184 (184)
28 KOG0961 Predicted Zn2+-depende 98.9 5.8E-08 1.3E-12 102.7 15.8 270 367-668 28-332 (1022)
29 KOG2019 Metalloendoprotease HM 98.5 8.8E-07 1.9E-11 94.2 13.0 282 366-680 60-380 (998)
30 PF03410 Peptidase_M44: Protei 91.2 3.4 7.3E-05 43.7 12.4 43 549-595 152-194 (590)
31 PF03410 Peptidase_M44: Protei 90.6 0.68 1.5E-05 48.6 6.8 162 13-213 26-191 (590)
32 PHA03081 putative metalloprote 86.2 2 4.4E-05 45.3 6.8 162 13-213 26-191 (595)
33 PHA03081 putative metalloprote 85.2 12 0.00026 39.8 11.8 43 549-595 152-194 (595)
34 PF08367 M16C_assoc: Peptidase 48.1 17 0.00036 36.2 3.2 71 28-100 112-193 (248)
35 PF05838 Glyco_hydro_108: Glyc 33.9 33 0.00071 27.5 2.1 25 162-186 39-64 (83)
36 COG4930 Predicted ATP-dependen 20.5 8.7E+02 0.019 25.9 9.9 20 184-204 317-336 (683)
No 1
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-108 Score=838.79 Aligned_cols=682 Identities=57% Similarity=0.911 Sum_probs=631.2
Q ss_pred CeeeecCCCcEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhH
Q 005555 1 MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDF 80 (691)
Q Consensus 1 ~~~~~~d~~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~ 80 (691)
+|+.++|.|++|.++++++|.+.+|++|+|||.++|||.+||.+++|.+||.+++.+++||+|.+|+|+|+++++|++|+
T Consensus 66 lhl~reD~N~vFsI~FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~yPfattN~kDf 145 (998)
T KOG2019|consen 66 LHLDREDENNVFSIVFRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFYPFATTNTKDF 145 (998)
T ss_pred EeeccCCCCceeEEEeecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCcceeecccCChHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCCcccchhhhhcccccccCCCCC---CccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCC
Q 005555 81 YNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSE---DITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVD 157 (691)
Q Consensus 81 ~~~l~~~~~~~~~P~~~~~~~~f~~e~~~~~~~~~~~---~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~ 157 (691)
.++.++|+|+.+.|.+...+ |.|||||+|..++.. ++..||||++||++..++|++.++..+++++||++.|+..
T Consensus 146 ~NL~dVYLDAtffPklr~~d--F~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~p~~tYgv~ 223 (998)
T KOG2019|consen 146 YNLRDVYLDATFFPKLRKLD--FQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALFPENTYGVN 223 (998)
T ss_pred HHHHHHhhhcccchHHHhhh--hhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHhhCcccccccc
Confidence 99999999999999999888 999999999876554 4559999999999999999999999999999999999999
Q ss_pred CCCCcCccCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhh---------------------------------
Q 005555 158 SGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILS--------------------------------- 204 (691)
Q Consensus 158 ~~G~~~~i~~lt~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~--------------------------------- 204 (691)
++|+|-+|.++|+|++++||++||||+|+.|+.+||++.++++.+++
T Consensus 224 SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~f~kp~rvve~~p~ 303 (998)
T KOG2019|consen 224 SGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKLFDKPRRVVEKGPA 303 (998)
T ss_pred CCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccccccccccCceeeeecCC
Confidence 99999999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 005555 205 -------------------------------------------------------------------------------- 204 (691)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (691)
T Consensus 304 d~~~~p~Kq~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGv 383 (998)
T KOG2019|consen 304 DPGDLPKKQTKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGV 383 (998)
T ss_pred CCCCCccceeEEEEEeecCCchhHHHHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCCcccccceeeeeeccc
Confidence
Q ss_pred -----------------------------hcccccccccccccCCCCchhhHHHHHhhhcccccCCCCcCCcCCchHHHH
Q 005555 205 -----------------------------EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMA 255 (691)
Q Consensus 205 -----------------------------~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 255 (691)
++.++++|+..++... ..|+.++.++.+.|.++.||++.|.+...+..
T Consensus 384 seediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~qst---~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~ 460 (998)
T KOG2019|consen 384 SEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKHQST---GFGLSLMQSIISKWINDMDPFEPLKFEEQLKK 460 (998)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhcccc---chhHHHHHHHhhhhccCCCccchhhhhhHHHH
Confidence 2234444444442222 23888889999999999999999999999999
Q ss_pred HHHHHhccCChhhHHHHHHHhcccCCCeeEEEEecCcCchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCC
Q 005555 256 LKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETP 335 (691)
Q Consensus 256 l~~~l~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~~~~~ 335 (691)
|+++++++ +..+|+.++++|+.++++.+++++.|+++..+.++++++.++++++..+|++|++.+.+...++.+.|+
T Consensus 461 lk~~l~ek-~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~~~eE~tkL~ek~~alteeD~~ei~k~~~eL~~kQ~-- 537 (998)
T KOG2019|consen 461 LKQRLAEK-SKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKLEQEEATKLEEKKAALTEEDLAEIAKAGEELREKQS-- 537 (998)
T ss_pred HHHHHhhh-chhHHHHHHHHHHhcCCceEEEEecCCchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhC--
Confidence 99999876 567999999999999999999999999999999999999999999999999999999998888888776
Q ss_pred CChhhhccCCCCCccCCCCCCCCCCCcccccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCC
Q 005555 336 DPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKD 415 (691)
Q Consensus 336 ~s~~~l~~~~~~~~~di~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~~~~~~~~~~~~~l~~~Gt~~ 415 (691)
.|+++.++|++.++||++.+...++++...||++|.++..+||+++|+++.+++++++++..+|+++||+.|++.||+.
T Consensus 538 -tp~dlsClPtL~vsDIp~~~~~~~~~v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~eL~PylPlfc~sll~lGt~~ 616 (998)
T KOG2019|consen 538 -TPEDLSCLPTLNVSDIPKTIPYTKLEVGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEELLPYLPLFCQSLLNLGTGD 616 (998)
T ss_pred -CccccccccccccccCCCCCCccceeeeeccCceeEEeeccCCceEEEEEeeccccCcHHhhcchHHHHHHHHhcCCCc
Confidence 5689999999999999999888888888999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcccceEEeeeeccCCCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q 005555 416 LSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARM 495 (691)
Q Consensus 416 ~~~~el~~~ie~~gg~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~ 495 (691)
.+..|+.+.|.+.+|++++++..+++.+.+.|.-.+.+++.|+.++.+++++|+..++.+++|.+.++++.++++..+++
T Consensus 617 lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~ 696 (998)
T KOG2019|consen 617 LSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRM 696 (998)
T ss_pred ccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHh
Confidence 99999999999999999999998888899999989999999999999999999999999999998899999999999999
Q ss_pred hhhhccCcHHHHHHHHHhccChhhhHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccc
Q 005555 496 ENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKN 575 (691)
Q Consensus 496 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~ 575 (691)
.+.+.++||.+|..++.+.+.+.+++.+.++|+.+.+++..+.+..+.+|+.+.+.|.++++.+.+.+||++.|+.|...
T Consensus 697 ~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q 776 (998)
T KOG2019|consen 697 TNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQ 776 (998)
T ss_pred hccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHhcCCCC-CCcccccccccCCCCceEE--EeC-cCeeEEEEecccCCCCCCcchHHHHHHHhhcCccch
Q 005555 576 LKNSERFVGKFLDMLPTN-SPVERVKWKAHLPSANEAI--VIP-TQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLW 651 (691)
Q Consensus 576 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~srL~ 651 (691)
...+++.+++|+..+|.. +......+....+-+.+++ ..| .|++|++.+..+++++|||-++++|++..|...+||
T Consensus 777 ~~~vEkav~kFl~~lp~e~p~g~~st~d~r~p~~~~~i~~~~P~fqvnyvgka~~~vpyt~~d~asl~vlS~~lt~k~Lh 856 (998)
T KOG2019|consen 777 LTNVEKAVEKFLDSLPRENPSGSKSTWDARLPLRSEAIRVVIPTFQVNYVGKAGLGVPYTHPDGASLQVLSKLLTNKWLH 856 (998)
T ss_pred chhHHHHHHHHHHhccccCCCCCccCccccCCCCceeEEEeccccchhhhhhhcccccCCCCCCcHHHHHHHHHHHHHHH
Confidence 888999999999999853 3332333333333334443 667 568999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccceecCCCceEEEEEeeCCChhhhhhhC
Q 005555 652 DRVRVSGGAYGGFCDFDSHSGVILIFILSGPQLVKNTRHI 691 (691)
Q Consensus 652 ~~IRekGlaYgv~~~~~~~~g~~~f~~y~~p~~~~t~~~~ 691 (691)
.+|||||||||.+|++++..|.|+|++|||||+.+|+++|
T Consensus 857 ~evRekGGAYGgg~s~~sh~GvfSf~SYRDpn~lktL~~f 896 (998)
T KOG2019|consen 857 DEVREKGGAYGGGCSYSSHSGVFSFYSYRDPNPLKTLDIF 896 (998)
T ss_pred HHHHHhcCccCCccccccccceEEEEeccCCchhhHHHhh
Confidence 9999999999999999999999999999999999999875
No 2
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=100.00 E-value=4.5e-102 Score=843.67 Aligned_cols=683 Identities=39% Similarity=0.685 Sum_probs=613.8
Q ss_pred CeeeecCCCcEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhH
Q 005555 1 MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDF 80 (691)
Q Consensus 1 ~~~~~~d~~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~ 80 (691)
+|+.++|+|++|.++++|+|.+.+|+||+|||++||||++||.+++|..|+++++++++||+|+.|+|+|++++.+++|+
T Consensus 34 ~hi~~~d~~~vFsi~F~T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T~YP~sS~~~~Df 113 (978)
T COG1026 34 AHIKNEDPNNVFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVYPASSANEKDF 113 (978)
T ss_pred EEecCCCcCceEEEEeecCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcceeeccccCcchH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCCCCC
Q 005555 81 YNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGG 160 (691)
Q Consensus 81 ~~~l~~~~~~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~G 160 (691)
.++|++|+|++++|.+.++. |.|||||+|..++ ++++.+|||++||++...+|.+++++.+++++||+..|++.+||
T Consensus 114 ~NLl~VYlDavf~PlL~~e~--F~QEgwr~e~~~~-~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp~~ty~~~SGG 190 (978)
T COG1026 114 YNLLSVYLDAVFHPLLTKES--FLQEGWRIEFKDE-SNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYGVNSGG 190 (978)
T ss_pred HHHHHHHHHhhhCcccchHH--HhhhhhccccCCC-ccceeeeEEeehhcccccCchhHHHHHHHHhhCCCccccccCCC
Confidence 99999999999999999999 9999999999876 67999999999999999999999999999999999999999999
Q ss_pred CcCccCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhh------------------------------------
Q 005555 161 DPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILS------------------------------------ 204 (691)
Q Consensus 161 ~~~~i~~lt~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~------------------------------------ 204 (691)
.|..|.++|+|++++||+++|+|+||+|+++||++.+++++.++
T Consensus 191 ~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~~~~~~~~~~ypi~~ 270 (978)
T COG1026 191 DPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFKKPRRKVLEYPISF 270 (978)
T ss_pred CcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCcccccCcccccceeeccCC
Confidence 99999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 005555 205 -------------------------------------------------------------------------------- 204 (691)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (691)
T Consensus 271 ~~~de~q~~~~lsWl~~~~~d~~~~lal~vL~~iLl~~~asPl~~~liesglg~~~~~g~~~~~~~~~~f~v~~~gv~~e 350 (978)
T COG1026 271 DEEDEDQGLLSLSWLGGSASDAEDSLALEVLEEILLDSAASPLTQALIESGLGFADVSGSYDSDLKETIFSVGLKGVSEE 350 (978)
T ss_pred CCCCCceeEEEEEEecCCcccHHHHHHHHHHHHHHccCcccHHHHHHHHcCCCcccccceeccccceeEEEEEecCCCHH
Confidence
Q ss_pred --------------------------hcccccccccccccCCCCchhhHHHHHhhhcccccCCCCcCCcCCchHHHHHHH
Q 005555 205 --------------------------EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKA 258 (691)
Q Consensus 205 --------------------------~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 258 (691)
+...++.|+..++. .+.|.|+.+++.....|.++.+|.+.|+....++.|++
T Consensus 351 k~~~~k~lV~~~L~~l~~~gi~~~~ie~~~~q~E~s~ke~--~s~pfgl~l~~~~~~gw~~G~dp~~~Lr~~~~~~~Lr~ 428 (978)
T COG1026 351 KIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKEV--KSYPFGLGLMFRSLYGWLNGGDPEDSLRFLDYLQNLRE 428 (978)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhh--cCCCccHHHHHHhccccccCCChhhhhhhHHHHHHHHH
Confidence 11122223333322 34566888888899999999999999999999999998
Q ss_pred HHhccCChhhHHHHHHHhcccCCCeeEEEEecCcCchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCCh
Q 005555 259 RLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPP 338 (691)
Q Consensus 259 ~l~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~~~~~~s~ 338 (691)
.+.. +. ||++|++||+++|.|.+++++.|+++..+.+.+++++.++.++..+++|+++++++..+.+++.|++++|.
T Consensus 429 ~le~--~~-~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~e~L~~~~~~l~de~~~ki~~~~~~lke~Q~~~dse 505 (978)
T COG1026 429 KLEK--GP-YFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSE 505 (978)
T ss_pred hhhc--Ch-HHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCCch
Confidence 8853 33 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccCCCCCCCCCCCcccccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCH
Q 005555 339 EALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSF 418 (691)
Q Consensus 339 ~~l~~~~~~~~~di~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~ 418 (691)
+.++++|.+++.||++...+.+++....+..+|++++..|++++|++++|+++.++.+..+|+++|...|...||+++++
T Consensus 506 ~~~~~lP~l~~~dvp~~~~k~~l~~~~~~~~~v~~~~~~tn~i~yl~~~~~~~~l~~~llpyL~L~~~~l~~lgt~~~~y 585 (978)
T COG1026 506 EDLATLPTLKLGDVPDPIEKTSLETEVSNEAKVLHHDLFTNGITYLRLYFDLDMLPSELLPYLPLFAFALTNLGTETYSY 585 (978)
T ss_pred hhhhhccccchhcCCCcccccceeeeccCCcceEEeecCCCCeEEEEEEeecCCCChhhhhhHHHHHHHHHhcCCCCcCH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccceEEeeeeccCC-CCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhh
Q 005555 419 VQLDQLIGRKTGGISVYPFTSSIH-GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMEN 497 (691)
Q Consensus 419 ~el~~~ie~~gg~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~~~ 497 (691)
.++.+.|+..+|+++++.+..+.. +.+.+++.+.++++|++++++++++|+.++|.++.|+|.+|++.++.|.++++..
T Consensus 586 ~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~ 665 (978)
T COG1026 586 KELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTS 665 (978)
T ss_pred HHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHH
Confidence 999999999999999999876544 4577899999999999999999999999999999997789999999999999999
Q ss_pred hhccCcHHHHHHHHHhccChhhhHHHHhchhhHHHHHHHHHHhhhcCHH-HHHHHHHHHHHHHcCCCCcEEEEEeCccch
Q 005555 498 RLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWA-GISSSLEEIRRSFLSREGCLINMTADGKNL 576 (691)
Q Consensus 498 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~ 576 (691)
...++||.+|..++.++++..+++.+.++|++++++++++..++++..+ ++.+.|++++++++..+|+.+.+.|+.+..
T Consensus 666 ~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~~~ 745 (978)
T COG1026 666 SVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDKI 745 (978)
T ss_pred hhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChhhh
Confidence 9999999999999999999999999999999999999999998877776 899999999999999999989999999654
Q ss_pred hhHH-HHHHHHHhcCCCCC-Cccc-ccccccCCC-CceEEEeCcCeeEEEEecc--cCCCCCCcchHHHHHHHhhcCccc
Q 005555 577 KNSE-RFVGKFLDMLPTNS-PVER-VKWKAHLPS-ANEAIVIPTQVNYVGKAAN--IFETGYKLNGSAYVISKHISNVWL 650 (691)
Q Consensus 577 ~~~~-~~~~~~~~~l~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~~~v~~~~~--~~~~~~~d~~al~vl~~iLg~srL 650 (691)
.++. +.+.++...+.... .+.+ ........+ ..+.+.+|.+++|.+++++ .+++.|||++++.|+.++|++++|
T Consensus 746 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~~~l 825 (978)
T COG1026 746 LDLLENPLLKFLEHLLPGFELPTPPKNPHLDLISSLSEATIIPSPVAYNALAFSIGGLPYTHPDYAALQVLSEYLGSGYL 825 (978)
T ss_pred HHHHHHHhhhhhcccCcccccCCCCCCcchhhhccccceEEeccHHHHHHHhhhccCCCCCCccchHHHHHHHHhccchh
Confidence 4332 22222222111111 1100 111111122 4566677888777666664 588999999999999999999999
Q ss_pred hhhhhccCCCCCccceecCCCceEEEEEeeCCChhhhhhhC
Q 005555 651 WDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQLVKNTRHI 691 (691)
Q Consensus 651 ~~~IRekGlaYgv~~~~~~~~g~~~f~~y~~p~~~~t~~~~ 691 (691)
|.+|||+|||||++++++...|.|+|++|||||+.+|++++
T Consensus 826 w~~IR~~GGAYGa~as~~~~~G~f~f~sYRDPn~~kt~~v~ 866 (978)
T COG1026 826 WNKIREKGGAYGASASIDANRGVFSFASYRDPNILKTYKVF 866 (978)
T ss_pred HHHHHhhccccccccccccCCCeEEEEecCCCcHHHHHHHH
Confidence 99999999999999999988999999999999999999874
No 3
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=2e-93 Score=836.40 Aligned_cols=686 Identities=35% Similarity=0.568 Sum_probs=595.0
Q ss_pred CeeeecCC---CcEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCH
Q 005555 1 MSVSNDDE---NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNT 77 (691)
Q Consensus 1 ~~~~~~d~---~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~ 77 (691)
+|+.++|+ +++|.+++++.+.+.+|+||+||||+|+||++||..+++..+..+.+|+++||+|+.|+|+|++.+.++
T Consensus 104 l~~~~~d~~~~~~~f~i~f~T~~~d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e 183 (1119)
T PTZ00432 104 ISLKTNDSSGKEMCFDFYVPTPPHNDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNE 183 (1119)
T ss_pred EEEecCCCccceeEEEEEecCCCCCCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccCCCCceEEEeccCCH
Confidence 35677775 899999999999999999999999999999999999999888777778999999999999999988888
Q ss_pred hhHHHHHHHHHhhhhCCCCcccchhhhhcccccccCCC--------------CCCccchhHHHHHHhhhcCChHHHHHHH
Q 005555 78 KDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNP--------------SEDITYKGVVFNEMKGVYSQPDNILGRA 143 (691)
Q Consensus 78 ~~~~~~l~~~~~~~~~P~~~~~~~~f~~e~~~~~~~~~--------------~~~~~~~~~v~~e~~~~~~~p~~~~~~~ 143 (691)
+++.+++++++|++++|.|++++..|.+||||+|++.+ +.++++|+||++||++..++|..++.+.
T Consensus 184 ~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~p~~~~~~~ 263 (1119)
T PTZ00432 184 KDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSDPLSFGYSV 263 (1119)
T ss_pred HHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHHhhCCHHHHHHHH
Confidence 89999999999999999999997668999999999764 3456669999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCcCccCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhccccc-------------
Q 005555 144 AQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNT------------- 210 (691)
Q Consensus 144 ~~~~l~~~~~~~~~~~G~~~~i~~lt~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~------------- 210 (691)
+.+.+| +|||+++++|++++|.++|+|++++||++||+|+||+|+++||+|++++++++++ .|+.
T Consensus 264 ~~~~lf-~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~-~f~~~~~~~~~~~~~~~ 341 (1119)
T PTZ00432 264 IYQNLF-SNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDN-YLTKHPKTGQLSHTAYR 341 (1119)
T ss_pred HHHHHh-CCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHH-HHhhccccccccccccc
Confidence 999999 9999999999999999999999999999999999999999999999999888862 1100
Q ss_pred ------cc-------cc-------ccc--------c-----CC-----------CC------------------------
Q 005555 211 ------IE-------FS-------LRE--------N-----NT-----------GS------------------------ 222 (691)
Q Consensus 211 ------~e-------~~-------~~~--------~-----~~-----------~~------------------------ 222 (691)
+. +. ... . .. ..
T Consensus 342 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~VLs~lLggg~sS~L~q 421 (1119)
T PTZ00432 342 EDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLVLNYLLLGTPESVLYK 421 (1119)
T ss_pred ccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHHHHHHHcCCCccHHHH
Confidence 00 00 000 0 00 00
Q ss_pred --------------------------------------------------------------------------------
Q 005555 223 -------------------------------------------------------------------------------- 222 (691)
Q Consensus 223 -------------------------------------------------------------------------------- 222 (691)
T Consensus 422 ~LrE~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~eGi~~eele~a~~qlef~~r 501 (1119)
T PTZ00432 422 ALIDSGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLNALTKVVTEGFNKSAVEASLNNIEFVMK 501 (1119)
T ss_pred HHHhcCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Confidence
Q ss_pred ------chhhHHHHHhhhcccccCCCCcCCcCCchHHHHHHHHHhccCChhhHHHHHHHhcccCCCeeEEEEecCc--Cc
Q 005555 223 ------FPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDP--EK 294 (691)
Q Consensus 223 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~ 294 (691)
+|.|+.++......|.++.+|.+.|+....+..|++.+.. ++.||++++++|+++|.|++++++.|++ +.
T Consensus 502 E~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~--~~~y~e~Li~k~ll~N~h~~~v~~~p~~s~~~ 579 (1119)
T PTZ00432 502 ELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRIDN--ESKYLEKLIEKHLLNNNHRVTVHLEAVESSKY 579 (1119)
T ss_pred hccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHhc--ccHHHHHHHHHHccCCCeeeEEEEecCCcccH
Confidence 0001111112223444555566666666777778877732 3469999999999999999999999999 99
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCChhhhccCCCCCccCCCCCCCCCCCcc-----------
Q 005555 295 ASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEV----------- 363 (691)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~~~~~~s~~~l~~~~~~~~~di~~~~~~~~~~~----------- 363 (691)
.+...+.+++++++++..+|++|++++.++.++++++|+.++++|.++++|.++++||++....+|..+
T Consensus 580 ~~~~~~~e~~~L~~~~~~Ls~ee~~~i~~~~~~l~~~q~~~~~~e~l~~lP~l~~~DI~~~~~~~~~~~~~~~~~~~~~~ 659 (1119)
T PTZ00432 580 EKEFNKLVKDELKERLSHLTKEQVDEMEKAYEKFKKEREADDDPEHLDSFPILSLSDLNKETEEIPTKLYKLSSDSLKEN 659 (1119)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhHHhhcCCCcHHHcCCcccCCcchhhhccccccccc
Confidence 998999999999999999999999999999999999999999999999999999999999888777654
Q ss_pred ----cccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeec
Q 005555 364 ----GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTS 439 (691)
Q Consensus 364 ----~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~~gg~l~~~~~~~ 439 (691)
...+|++|++++.+|||+||++++|++..++.++.+|+++|+.+|...||++++++|+...++..+|++++++..+
T Consensus 660 ~~~~~~~~~~~~~~~~~~TnGi~y~~~~fdl~~l~~e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~ 739 (1119)
T PTZ00432 660 MDLDSDGGSVTVLVHPIESRGILYLDFAFSLDSLTVDELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFY 739 (1119)
T ss_pred ccccccCCCcceEEEecCCCCeEEEEEEecCCCCCHHHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEe
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cC------CCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHh
Q 005555 440 SI------HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDA 513 (691)
Q Consensus 440 ~~------~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 513 (691)
+. .+.+.+..++.++++||.++++++++|+.++|.++.|++.+|+++++++.++++++.+.++||.+|..++.+
T Consensus 740 ~~~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s 819 (1119)
T PTZ00432 740 SETNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKS 819 (1119)
T ss_pred ccccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 43 345667889999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccChhhhHHHHhchhhHHHHHHHHH-HhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCC
Q 005555 514 KLNTAGWISEQMGGVSYLEFLQALE-EKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPT 592 (691)
Q Consensus 514 ~~~~~~~~~~~~~g~~~~~~l~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~ 592 (691)
.++....+.+.++|++++.+|+++. +.++++++.+.+.|+++++++|+++|+.++|+|+.+.++.+.+.+..++..|+.
T Consensus 820 ~~S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~ 899 (1119)
T PTZ00432 820 KFSVSDYADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSS 899 (1119)
T ss_pred cCCHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999987 566778889999999999999999999999999998888888888888888852
Q ss_pred CC---C--ccccccc--------ccCCCCceEEEeCcCeeEEEEecccCCCCCCcchHHHHHHHhhcCccchhhhhccCC
Q 005555 593 NS---P--VERVKWK--------AHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGG 659 (691)
Q Consensus 593 ~~---~--~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~srL~~~IRekGl 659 (691)
.. . ....++. ......++.+.+|.+++|+++|.+....++++.+++.|+.++|+.++||++||++||
T Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~V~yv~~~~~~~~~~~~~~~~l~Vl~~~L~~~yLw~~IR~~GG 979 (1119)
T PTZ00432 900 TFKENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPTRVNFVGMGGKLFDKSDKVDGSFQVIVHYLKNSYLWKTVRMSLG 979 (1119)
T ss_pred ccccccccccccccccccccccccCCcccceEEEccCceeEEEEecccccCCCccCHHHHHHHHHHccccchHHHcccCC
Confidence 11 1 1111121 112235788999999999999987788889999999999999999999999999999
Q ss_pred CCCccceecCCCceEEEEEeeCCChhhhhhhC
Q 005555 660 AYGGFCDFDSHSGVILIFILSGPQLVKNTRHI 691 (691)
Q Consensus 660 aYgv~~~~~~~~g~~~f~~y~~p~~~~t~~~~ 691 (691)
|||+++.+. ..|.+.|++|||||+.+|++++
T Consensus 980 AYG~~~~~~-~~G~~~f~SYRDPn~~~Tl~~f 1010 (1119)
T PTZ00432 980 AYGVFADLL-YTGHVIFMSYADPNFEKTLEVY 1010 (1119)
T ss_pred ccccCCccC-CCCeEEEEEecCCCHHHHHHHH
Confidence 999999887 4799999999999999999874
No 4
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-53 Score=434.21 Aligned_cols=657 Identities=21% Similarity=0.286 Sum_probs=491.1
Q ss_pred EecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhhhhCC
Q 005555 15 VFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFP 94 (691)
Q Consensus 15 g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~~~~~~P 94 (691)
...+|..+..|++|-|||++|+||++||.+.++....++++| +.||+|+.|+|.|.++++.++.+-++|++|+|.+..|
T Consensus 47 ~v~TEa~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~-dtNAwTDtD~T~YtLStag~dGFlklLPvy~dHiL~P 125 (1022)
T KOG0961|consen 47 SVVTEADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLA-DTNAWTDTDHTAYTLSTAGSDGFLKLLPVYIDHILTP 125 (1022)
T ss_pred EeeeeecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhc-ccccccccCcceEEeecccccchHHHhHHHHHhhcCc
Confidence 356888999999999999999999999999998888878865 5999999999999999999999999999999999999
Q ss_pred CCcccchhhhhcccccccCCCCCCccchhHHHHHHhhhcCChHHHHHHHHHHHhCC-CCCCCCCCCCCcCccCCCCHHHH
Q 005555 95 KCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFP-DNAYGVDSGGDPKVIPKLTFEEF 173 (691)
Q Consensus 95 ~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~-~~~~~~~~~G~~~~i~~lt~e~l 173 (691)
.++++. |..|++|+.-++. ++|+|+.||+..+++-.+.+.+..++.+|| .++|+..++|.+..++.+|.|++
T Consensus 126 ~Ltdea--f~TEVyHI~geg~-----d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTGG~~knLR~lt~ekI 198 (1022)
T KOG0961|consen 126 MLTDEA--FATEVYHITGEGN-----DAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETGGRLKNLRELTLEKI 198 (1022)
T ss_pred ccchhh--hhhheeeecCCCC-----ccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccCCChhhHHHhhHHHH
Confidence 999999 9999999876544 489999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhh-------------------------------cccccccccccccCCCC
Q 005555 174 KEFHRKYYHPSNARIWFYGDDDPNERLRILSE-------------------------------ASMNTIEFSLRENNTGS 222 (691)
Q Consensus 174 ~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~~-------------------------------~~~~~~e~~~~~~~~~~ 222 (691)
++|||++|+|+|++++|+|.+|+++++...+. ...+.+|++..+...+.
T Consensus 199 R~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t~~tVefp~~Des~G~ 278 (1022)
T KOG0961|consen 199 RDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTVHTVEFPTDDESRGA 278 (1022)
T ss_pred HHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccceeeeecCCcccccce
Confidence 99999999999999999999999999988760 00011111100000000
Q ss_pred c-------hh-------hHHHHHhhh-----cc-----------------------------------------------
Q 005555 223 F-------PR-------GLSLMLRSM-----GK----------------------------------------------- 236 (691)
Q Consensus 223 ~-------~~-------~~~~~~~~~-----~~----------------------------------------------- 236 (691)
. +. .+-+++..+ .+
T Consensus 279 v~~aW~g~s~sD~~t~~a~~vL~dyls~savapf~~~fVeieDP~assv~f~~~~~vrc~i~L~f~gVP~EKi~~~~~k~ 358 (1022)
T KOG0961|consen 279 VEVAWFGHSPSDLETHSALHVLFDYLSNSAVAPFQKDFVEIEDPLASSVSFHIAEGVRCDIRLNFAGVPVEKIDECAPKF 358 (1022)
T ss_pred EEEEEcCCCHHHhhhHHHHHHHHHHhccccccccccceEEecCccccceeeeeecccceeEEEeecCCcHHHhhhhhHHH
Confidence 0 00 000000000 00
Q ss_pred ---------------------------------------------cccCCCCcCCcCCc-hHHHHHHHHHhccCChhhHH
Q 005555 237 ---------------------------------------------WIYDMNPFEPLKYE-KPLMALKARLAEEGSKAVFS 270 (691)
Q Consensus 237 ---------------------------------------------~~~~~~~~~~l~~~-~~~~~l~~~l~~~~s~~~~~ 270 (691)
+.++...-+.|... .-+..+ +.|.+ .+...|.
T Consensus 359 l~~l~et~~iDm~Rm~~~i~~t~~~yL~nlE~n~~s~fms~ii~d~~ygnedg~~l~~~lk~l~~~-~~L~~-w~~kdW~ 436 (1022)
T KOG0961|consen 359 LDKLVETANIDMERMGYLIDQTILNYLVNLETNAPSDFMSHIIGDQLYGNEDGELLKKRLKELDFL-KKLKS-WPAKDWV 436 (1022)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHhhhhhccCcchhHHHHHHHhHHHH-HHHhh-ccHHHHH
Confidence 00000000000000 011111 11222 2445888
Q ss_pred HHHHHhcccCCCeeEEEEecCcCchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCChhhhccCCCCCcc
Q 005555 271 PLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLR 350 (691)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 350 (691)
.|++||+.++. .++|+..|..++.++++++..+.++++...+.++.++++-+.++..+..+.+.-+...|.++.-.+++
T Consensus 437 ~Llnk~Fven~-s~tVia~Ps~em~e~i~kE~~~~i~~r~~~lg~~gle~l~k~L~~ak~~N~~~~p~~ll~~f~I~~pe 515 (1022)
T KOG0961|consen 437 QLLNKYFVENP-SATVIAVPSEEMVEKIAKEEEKRIAARCEKLGKKGLEELGKSLEAAKLENTANHPSALLLDFLIVKPE 515 (1022)
T ss_pred HHHHHHhccCC-CeEEEecCcHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhhhcccCCCCHHHHhheeccCch
Confidence 89999988554 46788999999999999999999999999999999999999888888877776666555554333332
Q ss_pred CCCCCCCC--------CCC-------cccccCCce--EEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhh---
Q 005555 351 DIPKEPIR--------VPT-------EVGDINGVK--VLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKE--- 410 (691)
Q Consensus 351 di~~~~~~--------~~~-------~~~~~nG~~--v~~~~~~~~~~v~~~~~f~~g~~~~~~~~~~~~~~~~l~~--- 410 (691)
.|...... -|. ..+.....+ +.+++.|+. .|.+..+++..+++-..++|+.+|..++..
T Consensus 516 S~ef~~~~~v~t~~s~~pfdne~~~~~~T~~~~fp~fi~l~h~ps~-Fvel~fl~dss~i~~sl~pYl~~f~~l~~~~pa 594 (1022)
T KOG0961|consen 516 SLEFFDRFPVQTLTSNSPFDNELTPQQSTFLAQFPFFINLHHCPSK-FVELFFLLDSSNISISLRPYLFLFTDLLFESPA 594 (1022)
T ss_pred heeeeeccceeeccCCCCCCccccceeecccccCCceeecccCchH-HHhHhhhhccccCchhhhhHHHHHHHHHhcCHH
Confidence 22111110 010 112223333 334455665 667777778888988889999999887642
Q ss_pred --cCCCC----CCHHHHHHHHhhcccceEEeeeeccCCCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHH
Q 005555 411 --MGTKD----LSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRF 484 (691)
Q Consensus 411 --~Gt~~----~~~~el~~~ie~~gg~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~ 484 (691)
.||-. .+.+|+++.+-....+.++.++. +..+++.+.+.++|-.++++..+.|+.-.+....|| .+|+
T Consensus 595 ~ldgtiptp~~~s~~~v~~~~~s~~id~si~~g~-----~G~~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD-~~Ri 668 (1022)
T KOG0961|consen 595 MLDGTIPTPVLTSADDVAKHFTSDLIDHSIQVGV-----SGLYDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFD-PSRI 668 (1022)
T ss_pred HhcCCCCcchhhhHHHHHHHHHhhhhhhhhcccc-----cccchhheeEEEEEccCCcchhHHHHHHHhhhhccC-HHHH
Confidence 25433 34567777666665555555542 234578899999999999999999999999999999 6999
Q ss_pred HHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhhHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCC
Q 005555 485 KQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREG 564 (691)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n 564 (691)
..++++...++.+.++ +|.-++.......++....+......+...+-++.+.+.++.+.+.+++.++.++.-...-+.
T Consensus 669 ~~~~~~~l~~i~~~KR-dg~~vlss~~~~~lY~~~slk~s~d~L~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~ 747 (1022)
T KOG0961|consen 669 HQCAQKLLGEIRDRKR-DGCTVLSSAVASMLYGKNSLKISFDELVLEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNG 747 (1022)
T ss_pred HHHHHHHHhhhhhhhc-CccEehHHHHHHHHhcccchhhcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999987 567788888888899888888888888888899999998889999999999999885556688
Q ss_pred cEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccc--ccc--------ccCCCCceEEEeCcC-eeEEEEeccc-CCCCC
Q 005555 565 CLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV--KWK--------AHLPSANEAIVIPTQ-VNYVGKAANI-FETGY 632 (691)
Q Consensus 565 ~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~~~ 632 (691)
+.+.|+||++.++.....|........-+.+.... ++. .....+..+|.+|.. .+.++...|+ .++.+
T Consensus 748 ~~ihvvgDI~kid~~~~~Wn~l~~~~~~~nP~~~f~~tf~~~~~~s~e~gsssk~~~I~~p~sESs~l~~sip~~~~w~d 827 (1022)
T KOG0961|consen 748 VNIHVVGDIDKIDPKMLSWNWLQADPRFGNPGHQFSATFEAGENVSLELGSSSKELLIGVPGSESSFLYQSIPLDANWND 827 (1022)
T ss_pred eEEEEEeehhcCCccccCchhhhcCcccCCchhhcccccccCcccceeccCCcceeEecCCCccccceeeecccccccCC
Confidence 99999999998888777788777665433211010 011 111112233444543 4455666665 57999
Q ss_pred CcchHHHHHHHhhc--CccchhhhhccCCCCCccceecCCCceEEEEEeeCCChhhhhhh
Q 005555 633 KLNGSAYVISKHIS--NVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQLVKNTRH 690 (691)
Q Consensus 633 ~d~~al~vl~~iLg--~srL~~~IRekGlaYgv~~~~~~~~g~~~f~~y~~p~~~~t~~~ 690 (691)
|.++...++.++|| .+++|+.||..|+|||++++...+.+.+.|.+||.|++.++++.
T Consensus 828 pel~~~~l~~~YL~~~eGPfW~~IRG~GLAYGanm~~~~d~~~~~~~iyr~ad~~kaye~ 887 (1022)
T KOG0961|consen 828 PELIPAMLFGQYLSQCEGPFWRAIRGDGLAYGANMFVKPDRKQITLSIYRCADPAKAYER 887 (1022)
T ss_pred cchhHHHHHHHHHHhcccchhhhhcccchhccceeEEeccCCEEEEEeecCCcHHHHHHH
Confidence 99999999999999 88999999999999999999999999999999999999999874
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=5.3e-50 Score=477.25 Aligned_cols=613 Identities=14% Similarity=0.097 Sum_probs=414.2
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHh
Q 005555 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (691)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~~ 89 (691)
.+|++|+++||.++.|+|||+|||+|+||++||..+.+.+.+ ...|+.+||+|+.|+|+|++ ++..++++.+|+++++
T Consensus 70 l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l-~~~Gg~~NA~T~~d~T~y~~-~~~~~~l~~aL~~~ad 147 (961)
T PRK15101 70 LALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFL-KKHGGSHNASTASYRTAFYL-EVENDALPPAVDRLAD 147 (961)
T ss_pred EEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHH-HHhCCCccceECCCceEEEE-EcCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999998644466666 45599999999999999997 5678999999999999
Q ss_pred hhhCCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC-
Q 005555 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL- 168 (691)
Q Consensus 90 ~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~G~~~~i~~l- 168 (691)
++.+|.|++++ +++| |++|.+|++...++|..++.+.+.+.+|++|||+++.+|++++|.++
T Consensus 148 ~~~~P~f~~~~--~erE---------------~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etl~~~~ 210 (961)
T PRK15101 148 AIAEPLLDPKN--ADRE---------------RNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSGGNLETLSDKP 210 (961)
T ss_pred HHhccCCCHHH--HHHH---------------HHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCCCCHHHhhcCC
Confidence 99999999999 8887 99999999988889999999999999999999999999999999997
Q ss_pred ---CHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccC---CCCchhh-HHHHHh---------
Q 005555 169 ---TFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN---TGSFPRG-LSLMLR--------- 232 (691)
Q Consensus 169 ---t~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~e~~~~~~~---~~~~~~~-~~~~~~--------- 232 (691)
++++|++||++||+|+||+|+|+||+|+++++++++ ..|+.++....... .+..... ......
T Consensus 211 ~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (961)
T PRK15101 211 GSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAA-DTFGRVPNKNASVPEITVPVVTDAQKGIIIHYVPAQPRKV 289 (961)
T ss_pred chHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHH-HHhccCCCCCCCCCCCCCCCCCHHHcCeEEEEEECCCCcE
Confidence 699999999999999999999999999999999997 66666532210000 0000000 000000
Q ss_pred hhcccccCCCCcCCcCCchHHHHHHHHHhccCChhhHHHHHHHhcc------------cCCCeeEEEEecCcC---chhh
Q 005555 233 SMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYIL------------NNPHCVTVEMQPDPE---KASR 297 (691)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~s~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~---~~~~ 297 (691)
....|..+... ... .......+...+..+.++++++.+.++.+. .+...+.+.+.+.++ ..+.
T Consensus 290 l~l~~~~p~~~-~~~-~~~~~~~l~~ll~~~~~g~l~~~L~~~gla~~v~s~~~~~~~~~~g~f~i~~~~~~~~~~~~~~ 367 (961)
T PRK15101 290 LRVEFRIDNNS-AKF-RSKTDEYISYLIGNRSPGTLSDWLQKQGLAEGISAGADPMVDRNSGVFAISVSLTDKGLAQRDQ 367 (961)
T ss_pred EEEEEecCCcH-HHH-hhCHHHHHHHHhcCCCCCcHHHHHHHcCccceeeeccccccCCCceEEEEEEEcChHHHHhHHH
Confidence 00011111000 000 011234455566655555566666544321 011224455554442 3445
Q ss_pred HHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhCCCCChh----------------hhcc---CCCCCcc-------
Q 005555 298 DEAAEKEILAKV-KSSMTKEDLAELARATEELRLKQETPDPPE----------------ALRS---VPSLSLR------- 350 (691)
Q Consensus 298 ~~~~~~~~l~~~-~~~~s~eel~~~k~~~~~~~~~~~~~~s~~----------------~l~~---~~~~~~~------- 350 (691)
..+.+.++++.+ +.|+++++++++|+.......++....+.+ .+.. +..++++
T Consensus 368 v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ 447 (961)
T PRK15101 368 VVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTMLRVPVEHTLDAPYIADRYDPKAIKARLA 447 (961)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhhhCCHHHheeCchhhhcCCHHHHHHHHh
Confidence 667777777776 899999999999986543222211111100 0000 0000000
Q ss_pred --------------------------------CC-------------------CCCCCCCC---------------Cccc
Q 005555 351 --------------------------------DI-------------------PKEPIRVP---------------TEVG 364 (691)
Q Consensus 351 --------------------------------di-------------------~~~~~~~~---------------~~~~ 364 (691)
+| |.....+| ....
T Consensus 448 ~l~~~n~~i~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~l~lP~~n~fip~~~~~~~~~~~~~~p~~i~ 527 (961)
T PRK15101 448 EMTPQNARIWYISPQEPHNKTAYFVDAPYQVDKISEQTFADWQQKAQNIALSLPELNPYIPDDFSLIKADKAYKHPELIV 527 (961)
T ss_pred hcCHhHEEEEEEeCCCCCCccccccCCcceeecCCHHHHHHHhcCCCCccCCCCCCCCccCCCCeeccCCCCCCCCeEEE
Confidence 00 00000011 1113
Q ss_pred ccCCceEEEeecC---CCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeec
Q 005555 365 DINGVKVLQHDLF---TNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTS 439 (691)
Q Consensus 365 ~~nG~~v~~~~~~---~~~~v~~~~~f~~g~~~~--~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~~gg~l~~~~~~~ 439 (691)
+.||++|++.+++ ..|.+.+.+.|..+...+ .......++..++ +.+..++....+..|.+++.+ +
T Consensus 528 ~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll------~~~l~e~~y~a~~aG~~~~~~-~-- 598 (961)
T PRK15101 528 DEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLA------GLALDQLSNQASVGGISFSTN-A-- 598 (961)
T ss_pred cCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHH------HHHHHHHhchHHhcCcEEEEc-c--
Confidence 5789999999887 789999999998876532 4445677777765 346677888888888888888 4
Q ss_pred cCCCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhh
Q 005555 440 SIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (691)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (691)
.+++.+++++++++++.+++++.+++.+|.|+ ++++..++...++.+.+...+.+...+...+ .....+
T Consensus 599 --------~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~-~~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~ 667 (961)
T PRK15101 599 --------NNGLMVNANGYTQRLPQLLQALLEGYFSFTPT-EEQLAQAKSWYREQLDSAEKGKAYEQAIMPA--QMLSQV 667 (961)
T ss_pred --------CCCEEEEEEecChhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhhcccCcHHHHHHHH--HHHhcC
Confidence 68899999999999999999999999999999 4667666666666665544433333222211 122233
Q ss_pred hHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcc-c
Q 005555 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVE-R 598 (691)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~-~ 598 (691)
++.. ..+..+.+..+ +.++|++||+++|.+.|++++|+||++ .+++.+.++.+++.|+..+... .
T Consensus 668 py~~---~~~~~~~l~~i----------t~edl~~f~~~~~~~~~~~~~v~GNi~-~~ea~~l~~~~~~~l~~~~~~~~~ 733 (961)
T PRK15101 668 PYFE---RDERRKLLPSI----------TLKDVLAYRDALLSGATPEFLVVGNLT-EEQVTTLARDVQKQLGADGTEWWR 733 (961)
T ss_pred CCCC---HHHHHHHHhcC----------CHHHHHHHHHHHHHhceEEEEEEcCCC-HHHHHHHHHHHHHHhccCCccccc
Confidence 3321 12234444444 349999999999999999999999996 5789999999988886432110 0
Q ss_pred ccccccCCCCceEEEe-C-cCeeEEEEecccCCCCCCcchHHHHHHHhhc---Cccchhhhhcc-CCCCCccceecCCCc
Q 005555 599 VKWKAHLPSANEAIVI-P-TQVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVS-GGAYGGFCDFDSHSG 672 (691)
Q Consensus 599 ~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg---~srL~~~IRek-GlaYgv~~~~~~~~g 672 (691)
.......++....+.. + ..++.+..++..+.. +..+..+++.+|| +||||++||++ ||+|+|++++....+
T Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~lLg~~~ssrlf~~LRtk~qLgY~V~s~~~~~~~ 810 (961)
T PRK15101 734 GKDVVVDKKQSVNFEKAGSSTDSALAAVYVPTGY---DEYQSSAYSSLLGQIIQPWFYNQLRTEEQLGYAVFAFPMSVGR 810 (961)
T ss_pred ccceEeCCCCeEEEecCCCCCCCeEEEEEEeCCC---CCHHHHHHHHHHHHHHhHHHHHHHHHHhhhceEEEEEeeccCC
Confidence 0000001111111221 1 223344444422221 3478888899998 89999999996 999999999887778
Q ss_pred eEEEEEeeC
Q 005555 673 VILIFILSG 681 (691)
Q Consensus 673 ~~~f~~y~~ 681 (691)
.+.+.++..
T Consensus 811 ~~~~~~~vq 819 (961)
T PRK15101 811 QWGMGFLLQ 819 (961)
T ss_pred eeeEEEEEE
Confidence 887777763
No 6
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=2.1e-33 Score=310.41 Aligned_cols=293 Identities=12% Similarity=0.041 Sum_probs=223.8
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHH-HHHHHHhhcccceEEeeeeccC
Q 005555 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFV-QLDQLIGRKTGGISVYPFTSSI 441 (691)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~-el~~~ie~~gg~l~~~~~~~~~ 441 (691)
+++||++|++.++++.++|.+.++|++||..+ ....++++|+++|+++||++++.. +|.+.++.+||.+|++|+
T Consensus 4 tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts---- 79 (696)
T TIGR02110 4 TLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTL---- 79 (696)
T ss_pred EcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEc----
Confidence 57899999999999999999999999999875 566788888877777899999985 899999999999999999
Q ss_pred CCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhh
Q 005555 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQ--QRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (691)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~--e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (691)
.+.++|++++++++++.++++++|++.+|.|++. ++++.++.+++... . +++...+...+...++++|
T Consensus 80 ------~d~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~---~-ddp~~~~~~~l~~~l~~~H 149 (696)
T TIGR02110 80 ------ERTTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAW---Q-NDADTLREAALLDALQAGH 149 (696)
T ss_pred ------CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH---h-cCHHHHHHHHHHHHcCCCC
Confidence 7999999999999999999999999999999952 24444444444433 3 3445677777778888888
Q ss_pred hHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccc
Q 005555 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (691)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (691)
+|++.. +++.+.|..++ ..+.++|++||+++|.|+||+++|+||++ .++++++++++|+.|+.+..+.+.
T Consensus 150 Py~~~~--iGt~esL~~it-------~~t~edL~~F~~~~Y~p~NmvLvIvGdvs-~eel~~l~e~~f~~~~~~~~~~~~ 219 (696)
T TIGR02110 150 PLRRFH--AGSRDSLALPN-------TAFQQALRDFHRRHYQAGNMQLWLQGPQS-LDELEQLAARFGASLAAGGECAQA 219 (696)
T ss_pred CCCCCC--CCCHHHHhCcc-------cchHHHHHHHHHHhcchhcEEEEEEeCCC-HHHHHHHHHHHhCCCCCCCCCCCC
Confidence 887544 33355555432 12459999999999999999999999996 688999999999999865432111
Q ss_pred cccccCCCCceEE-EeCcCeeEEEEecccCCCCCCcchHHHHHHHhhc---CccchhhhhccCCCCCccceecC-CCceE
Q 005555 600 KWKAHLPSANEAI-VIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDS-HSGVI 674 (691)
Q Consensus 600 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg---~srL~~~IRekGlaYgv~~~~~~-~~g~~ 674 (691)
..++........+ ..+.++.++++++++.+..+++ ++.++++||| +|+|+++|||+|+||++++++.. ..|.+
T Consensus 220 ~~~p~~~~~~~~~~~~~~~q~~l~~~~p~~~~~d~~--al~lL~~iLg~g~sSrL~~~LRe~GLaysV~s~~~~~~~g~~ 297 (696)
T TIGR02110 220 PPAPLLRFDRLTLAGGSEPRLWLLFALAGLPATARD--NVTLLCEFLQDEAPGGLLAQLRERGLAESVAATWLYQDAGQA 297 (696)
T ss_pred CCCCCCCCceeEEEecCcceEEEEEeecCCCCCChH--HHHHHHHHhCCCcchHHHHHHHHCCCEEEEEEeccccCCCCc
Confidence 1111111122222 2334566777888777666555 5889999999 78999999999999999987532 24544
Q ss_pred EEEEeeCC
Q 005555 675 LIFILSGP 682 (691)
Q Consensus 675 ~f~~y~~p 682 (691)
.|.+|..+
T Consensus 298 lf~I~~~l 305 (696)
T TIGR02110 298 LLALEFSA 305 (696)
T ss_pred EEEEEEEE
Confidence 66666554
No 7
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=100.00 E-value=2.8e-33 Score=277.85 Aligned_cols=247 Identities=34% Similarity=0.570 Sum_probs=211.6
Q ss_pred EecCcCchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCChhhhccCCCCCccCCCCCCCCCCCcccccC
Q 005555 288 MQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDIN 367 (691)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~~~~~~s~~~l~~~~~~~~~di~~~~~~~~~~~~~~n 367 (691)
+.|+++..++..+++++.+++++..+|++|++++.++.+.++++|.+++ .++++|.++++||++....+|.++...+
T Consensus 1 m~P~~~~~~~~~~~e~~~L~~~k~~Ls~~e~~~i~~~~~~L~~~Q~~~d---~~~~LP~L~~~Di~~~~~~~~~~~~~~~ 77 (248)
T PF08367_consen 1 MKPDPGLSEKQEEEEKEKLAAYKASLSEEEKEKIIEQTKELKERQEAED---DLATLPTLSLSDIPREIEKIPLEVEKLG 77 (248)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHCS-----HHTTS----GGGS-SS------EECCCT
T ss_pred CCCCchHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCChh---hHHHHccccHHhcCCCCCCCCceeeecC
Confidence 4789999999999999999999999999999999999999999999766 8899999999999999999999888889
Q ss_pred CceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeecc-CCCCCC
Q 005555 368 GVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSS-IHGKED 446 (691)
Q Consensus 368 G~~v~~~~~~~~~~v~~~~~f~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~~gg~l~~~~~~~~-~~~~~~ 446 (691)
|++|++++.+|||++|++++|+++.++.++.+++++|+.+|...||+++++.|++..+..++|++++++..++ ..+.+.
T Consensus 78 ~~~v~~~~~~TnGI~Y~~l~fdl~~l~~e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~ 157 (248)
T PF08367_consen 78 GIPVLFHEQPTNGIVYVRLYFDLSDLPEEDLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDK 157 (248)
T ss_dssp TCEEEEEE---TTEEEEEEEEE-TTS-CCCHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECC
T ss_pred CccEEEEEcCCCCeEEEEEEecCCCCCHHHHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998755 446788
Q ss_pred CeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhhHHHHhc
Q 005555 447 PCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMG 526 (691)
Q Consensus 447 ~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 526 (691)
+..++.++++||.++++++++||.+++.+|.|++.+|++.++.+.+++++++..++||.+|..++.+.++..+.+.+.++
T Consensus 158 ~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~~~~i~~~Gh~~A~~ra~s~~s~~~~~~e~~~ 237 (248)
T PF08367_consen 158 YRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKERLKELLKELKSDMESSIISSGHSYAMSRASSYLSRSGALDELWS 237 (248)
T ss_dssp CEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCTT-HHHHHHHHHH
T ss_pred eeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 89999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHH
Q 005555 527 GVSYLEFLQAL 537 (691)
Q Consensus 527 g~~~~~~l~~l 537 (691)
|++++.||++|
T Consensus 238 Gl~~~~fl~~L 248 (248)
T PF08367_consen 238 GLSQYKFLKDL 248 (248)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHhC
Confidence 99999999864
No 8
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=303.97 Aligned_cols=306 Identities=23% Similarity=0.290 Sum_probs=221.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHh
Q 005555 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (691)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~~ 89 (691)
++|++|++.|+.++.|+|||||||+|+|+++++..++...+ +..|+..||+|+.|+|+|.+. +..++++.++++++|
T Consensus 43 ~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~--~~~G~~~na~ts~d~t~y~~~-~l~~~~~~~l~llad 119 (438)
T COG0612 43 VWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAF--EKLGGQLNAFTSFDYTVYYLS-VLPDNLDKALDLLAD 119 (438)
T ss_pred EEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHH--HHhcCeeeccccchhhhhhhh-hchhhhHHHHHHHHH
Confidence 57999999999999999999999999999999987744444 566888999999999999976 688999999999999
Q ss_pred hhhCCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 005555 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (691)
Q Consensus 90 ~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~G~~~~i~~lt 169 (691)
++.+|.|++++ |++| |++|++|+++..++|..++.+.+.+.+|++|||+++++|++++|+++|
T Consensus 120 ~l~~p~f~~~~--~e~E---------------k~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~it 182 (438)
T COG0612 120 ILLNPTFDEEE--VERE---------------KGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAIT 182 (438)
T ss_pred HHhCCCCCHHH--HHHH---------------HHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCHHHHHhCC
Confidence 99999999999 9887 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccc-ccc-ccCC-C--------C--chhhHHHHHhhhcc
Q 005555 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEF-SLR-ENNT-G--------S--FPRGLSLMLRSMGK 236 (691)
Q Consensus 170 ~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~e~-~~~-~~~~-~--------~--~~~~~~~~~~~~~~ 236 (691)
+++|++||++||+|+||+|+++||+|++++.++++ ..|+.++. ... .... . . .+....+.......
T Consensus 183 ~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (438)
T COG0612 183 REDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIE-KYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDLEQAWLAL 261 (438)
T ss_pred HHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHH-HHHccCCccCCCCCCCCccccCCCceEEecCCCCchhhhhhhhc
Confidence 99999999999999999999999999999999997 54554432 100 0000 0 0 00000111111111
Q ss_pred cccCCCCcCCcCCchHHHHHHHHHhccCChhhHHHHHHHhcc-----------cCCCeeEEEEecCcCchhhHHHHHHHH
Q 005555 237 WIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYIL-----------NNPHCVTVEMQPDPEKASRDEAAEKEI 305 (691)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~l~~~l~~~~s~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (691)
+.... +........++..+...+.+..++++|..++++.-+ .....+.+....++...+...+.+.++
T Consensus 262 g~~~~-~~~~~~~~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 340 (438)
T COG0612 262 GYPGP-DYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEI 340 (438)
T ss_pred cccCc-CcCcchhhHHHHHHHHHhCCCcchHHHHHHHHhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHH
Confidence 11111 111111234455455555544556799988887211 011112333344433344455666666
Q ss_pred HHHHHhc----CCHHHHHHHHHHHHHHHHHhCCCCChh
Q 005555 306 LAKVKSS----MTKEDLAELARATEELRLKQETPDPPE 339 (691)
Q Consensus 306 l~~~~~~----~s~eel~~~k~~~~~~~~~~~~~~s~~ 339 (691)
++.++.. ++++++++.|.... .......++++
T Consensus 341 ~~~~~~~~~~~~t~~~~~~~k~~~~--~~~~~~~~s~~ 376 (438)
T COG0612 341 LKALKKGLKGPFTEEELDAAKQLLI--GLLLLSLDSPS 376 (438)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHH--HHhhhccCCHH
Confidence 6665333 89999999988444 33333444554
No 9
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=304.20 Aligned_cols=301 Identities=14% Similarity=0.145 Sum_probs=234.7
Q ss_pred ccccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 005555 363 VGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (691)
Q Consensus 363 ~~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~~gg~l~~~~~~~~~ 441 (691)
.+++||++++..+.++.+.|.+.++|++|+..+ ....+++||.++|++.||++++..+|.+.++..||.+|++|+
T Consensus 20 ~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~ts---- 95 (438)
T COG0612 20 FTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFTS---- 95 (438)
T ss_pred EEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeecccc----
Confidence 368999999999999999999999999998765 445567777777777899999999999999999999999999
Q ss_pred CCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhh
Q 005555 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQ--QRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (691)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~--e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (691)
.+++.|+++++++++++++++++|++.+|.|++. +++|.++.+++.+.. +++..++...+...+++++
T Consensus 96 ------~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~----d~p~~~~~~~l~~~~~~~~ 165 (438)
T COG0612 96 ------FDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQ----DDPDDLAFERLLEALYGNH 165 (438)
T ss_pred ------chhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc----cCchHHHHHHHHHHhhccC
Confidence 7999999999999999999999999999999953 366677777776665 3456788888888888889
Q ss_pred hHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccc
Q 005555 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (691)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (691)
++++...|. .+.|..++. ++|++||+++|+|+||+|+|+||++ .+++...++++|++|+....+...
T Consensus 166 p~~~~~~G~--~e~I~~it~----------~dl~~f~~k~Y~p~n~~l~vvGdi~-~~~v~~~~~~~f~~~~~~~~~~~~ 232 (438)
T COG0612 166 PLGRPILGT--EESIEAITR----------EDLKDFYQKWYQPDNMVLVVVGDVD-AEEVVELIEKYFGDLPGAAPPPKI 232 (438)
T ss_pred CCCCCCCCC--HHHHHhCCH----------HHHHHHHHHhcCcCceEEEEecCCC-HHHHHHHHHHHHccCCccCCCCCC
Confidence 988766554 566666643 9999999999999999999999997 478999999999999962211111
Q ss_pred -cccccCCCCceEEEe----CcCeeEEEEecccCCCCCC-cchHHHHHHHhhc---Cccchhhhhcc-CCCCCccceec-
Q 005555 600 -KWKAHLPSANEAIVI----PTQVNYVGKAANIFETGYK-LNGSAYVISKHIS---NVWLWDRVRVS-GGAYGGFCDFD- 668 (691)
Q Consensus 600 -~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~-d~~al~vl~~iLg---~srL~~~IRek-GlaYgv~~~~~- 668 (691)
..+...+.....+.. ...+.++..|++.++..++ +++++.|++.+|| +||||++|||+ ||||++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~~ 312 (438)
T COG0612 233 PPEPPLGPERVVRVNDPEQPDLEQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDF 312 (438)
T ss_pred CCccccCCCceEEecCCCCchhhhhhhhccccCcCcCcchhhHHHHHHHHHhCCCcchHHHHHHHHhcCceeeecccccc
Confidence 111212222222111 2335577788888887777 8899999999999 69999999997 99999985443
Q ss_pred -CCCceEEEEEe-eCCChhhhhhh
Q 005555 669 -SHSGVILIFIL-SGPQLVKNTRH 690 (691)
Q Consensus 669 -~~~g~~~f~~y-~~p~~~~t~~~ 690 (691)
...|.+.+++- ..+++.++.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~ 336 (438)
T COG0612 313 LSDSGLFSIYAGTAPENPEKTAEL 336 (438)
T ss_pred ccccCCceEEEEecCCChhhHHHH
Confidence 34455444443 33467666553
No 10
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-30 Score=285.99 Aligned_cols=615 Identities=17% Similarity=0.146 Sum_probs=377.3
Q ss_pred CCcEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHH
Q 005555 8 ENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVY 87 (691)
Q Consensus 8 ~~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~ 87 (691)
...-+++||..||.+..|+|||+|||+|.||++||..+.+..+++.. |++-||+|..++|+|+|.. ..+.|+.+|+.+
T Consensus 52 aal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~-gGssNA~T~~e~T~y~F~V-~~~~l~~ALDrF 129 (974)
T KOG0959|consen 52 AALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKN-GGSSNAYTDSEHTNYYFDV-QHDHLEGALDRF 129 (974)
T ss_pred eeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhc-CCccccccccccceEEEec-chHHHHHHHHHH
Confidence 34569999999999999999999999999999999999999999665 8899999999999999976 778899999999
Q ss_pred HhhhhCCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCC
Q 005555 88 FDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPK 167 (691)
Q Consensus 88 ~~~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~G~~~~i~~ 167 (691)
++.+.+|.|.++. .++| +..|.+|.++..++-.++..+..+...-|+|||++.++|..++|..
T Consensus 130 aqFf~~Plf~~~a--~eRE---------------v~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tGN~~tL~~ 192 (974)
T KOG0959|consen 130 AQFFSDPLFNKSA--TERE---------------VGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTGNKKTLLE 192 (974)
T ss_pred HHHhhCcccChHH--HHHH---------------HHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhccccchhhhhh
Confidence 9999999999999 7776 8999999999888878887777777777899999999999999999
Q ss_pred CC-----HHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhccccccccccccc-CCCCchhhHHHH-----------
Q 005555 168 LT-----FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLREN-NTGSFPRGLSLM----------- 230 (691)
Q Consensus 168 lt-----~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~e~~~~~~-~~~~~~~~~~~~----------- 230 (691)
.. +++|++||++||++++|+++|+|..+.+.+..++. ..|..++-..++. ..+..|.+..-.
T Consensus 193 ~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~-~~F~~i~N~~~~~p~f~~~p~~~e~~~~~~~v~pik~ 271 (974)
T KOG0959|consen 193 GPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVT-RLFDEISNKKKPRPVFPEPPFLPEELKKLVRVVPIKD 271 (974)
T ss_pred ccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHH-HHcccccccCCCCCcccCCCCChHHhCcEEEEEeccc
Confidence 98 99999999999999999999999999999999875 5455443221110 000111111000
Q ss_pred -HhhhcccccCCCCcCCcCCchHHHHHHHHHhccCChhhHHHHHHHhcc----------cCCCe-eEEEEe-cCcCch--
Q 005555 231 -LRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYIL----------NNPHC-VTVEMQ-PDPEKA-- 295 (691)
Q Consensus 231 -~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~s~~~~~~l~~~~~~----------~~~~~-~~~~~~-~~~~~~-- 295 (691)
......|.-+.. ...-.....+.+...+..+..+.+...|.++... ...+. +.|++. .+.+..
T Consensus 272 ~~~l~is~~~p~~--~~~y~~kP~~y~~hLigheg~GSL~~~Lk~~gw~~sl~a~~~~~as~~~~f~v~idLtd~G~e~~ 349 (974)
T KOG0959|consen 272 GRSLMISWPVPPL--NHHYKSKPLRYLSHLIGHEGPGSLLSYLKRLGWATSLEAGIPEFASGYSFFNVSIDLTDEGLEHV 349 (974)
T ss_pred cceEEEEEecCCc--ccccccCcHHHHHHHhccCCcchHHHHHHHhhchheeecCCCccccccceEEEEEEeccccchhH
Confidence 001112221110 0000123445566666555444466666555322 11112 222222 334433
Q ss_pred hhHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhCCCCChhhh-------ccCCCC--------------------
Q 005555 296 SRDEAAEKEILAKV-KSSMTKEDLAELARATEELRLKQETPDPPEAL-------RSVPSL-------------------- 347 (691)
Q Consensus 296 ~~~~~~~~~~l~~~-~~~~s~eel~~~k~~~~~~~~~~~~~~s~~~l-------~~~~~~-------------------- 347 (691)
+....++.+.++.+ ..++-+--++.....-.....++.+..+.+.. ..+|..
T Consensus 350 ~~ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq~~P~~~il~~~~ll~~~~p~~i~~~ 429 (974)
T KOG0959|consen 350 DEIIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNLQYYPVEDVLTGSYLLTEFDPDLIQEV 429 (974)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhcccCChHHhhcchhhhhhcChHHHHHH
Confidence 55567888888877 55555444444443323334455544333211 111100
Q ss_pred ---------------------------------CccCCCCCCCC-------------------CCC--------------
Q 005555 348 ---------------------------------SLRDIPKEPIR-------------------VPT-------------- 361 (691)
Q Consensus 348 ---------------------------------~~~di~~~~~~-------------------~~~-------------- 361 (691)
.++||+..+.+ +|+
T Consensus 430 ~~~L~p~n~~v~~~s~~~~~~~d~~E~~ygt~y~~e~i~~~~~~~~~~~~~~~~l~lP~~nefI~t~f~~~~~~~~~~~~ 509 (974)
T KOG0959|consen 430 LSSLVPSNMRVILVSRSFEGKTDKAEPWYGTAYKVEDIPAEIIKEWENSHLNPELHLPTPNEFIPTDFSILPAPIPKLEY 509 (974)
T ss_pred HHhcCcccceeeeeeeccccccccccceeccccccccCCHHHHHHhhccCccccccCCCCCcccccccccccccCccccC
Confidence 00111110000 010
Q ss_pred --cccccCCceEEEeec--CCCcEEEEEEEeeC-CCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEe
Q 005555 362 --EVGDINGVKVLQHDL--FTNDVLYTEVVFDM-SSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVY 435 (691)
Q Consensus 362 --~~~~~nG~~v~~~~~--~~~~~v~~~~~f~~-g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~~gg~l~~~ 435 (691)
-.......++++..+ ...|..++.+.|.. +.... ....+..++..++.. .+. |..-.....|-.++.+
T Consensus 510 P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d----~l~--E~~Y~A~~aGl~~~~~ 583 (974)
T KOG0959|consen 510 PVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKD----QLN--EYLYPALLAGLTYSLS 583 (974)
T ss_pred CeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHHHHHHH----HHh--HHHHHHHhccceEEee
Confidence 000112345655543 23455555555533 22111 121233444443332 222 2222333334344444
Q ss_pred eeeccCCCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhcc
Q 005555 436 PFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKL 515 (691)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 515 (691)
.+ ..++.++++..++++..+++.+.+++.+-..+ .+|+..+.+..+..+.+...+.|+..+.......+
T Consensus 584 ~s----------~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~-~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll 652 (974)
T KOG0959|consen 584 SS----------SKGVELRVSGFNEKLPLLLEKVVQMMANFELD-EDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLL 652 (974)
T ss_pred ec----------CCceEEEEeccCcccHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHh
Confidence 44 46788899999999999999999999888866 78999999999999999788888888888776666
Q ss_pred ChhhhHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCC
Q 005555 516 NTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSP 595 (691)
Q Consensus 516 ~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~ 595 (691)
-...+. - .+.+..+. ..+++++..|-..++.+--+.+.|.||++ .+++..+++.....+....+
T Consensus 653 ~~~~W~-----~---~e~~~al~-------~~~le~~~~F~~~~~~~~~~e~~i~GN~t-e~~A~~l~~~v~d~l~~~~~ 716 (974)
T KOG0959|consen 653 EESIWS-----K---EELLEALD-------DVTLEDLESFISEFLQPFHLELLIHGNLT-EKEALQLLKSVLDILKSAAP 716 (974)
T ss_pred hccccc-----h---HHHHHHhh-------cccHHHHHHHHHHHhhhhheEEEEecCcc-hHHHHHHHHHHHhhhhccCC
Confidence 543222 1 12222221 12458889898888888889999999996 46788877777666621111
Q ss_pred -ccccc-------ccccCCCCceEE-EeC---cCee-EEEEecccCCCCCCcchHHHHHHHhhcCccchhhhh--cc-CC
Q 005555 596 -VERVK-------WKAHLPSANEAI-VIP---TQVN-YVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVR--VS-GG 659 (691)
Q Consensus 596 -~~~~~-------~~~~~~~~~~~~-~~~---~~~~-~v~~~~~~~~~~~~d~~al~vl~~iLg~srL~~~IR--ek-Gl 659 (691)
..+.. .+...+.+...+ ... .+.+ .+..-+..-..+..+..-+.++..++. ..+|..|| |+ |+
T Consensus 717 ~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i~~~~Q~~~~~~~~~~~~~L~~~li~-ep~Fd~LRTkeqLGY 795 (974)
T KOG0959|consen 717 NSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCIEVYYQIGVQDTRDNAVLGLLEQLIK-EPAFDQLRTKEQLGY 795 (974)
T ss_pred CCccccccccCcccceeccCCceEEEEcccccCCCCceEEEEEEcccchhHHHHHHHHHHHHhc-cchHHhhhhHHhhCe
Confidence 10100 001111111222 111 1111 111222222244455667777777775 68899999 55 77
Q ss_pred CCCccceecCCCceEEEEE
Q 005555 660 AYGGFCDFDSHSGVILIFI 678 (691)
Q Consensus 660 aYgv~~~~~~~~g~~~f~~ 678 (691)
.++.++......-.+.+.+
T Consensus 796 iv~~~~r~~~G~~~~~i~V 814 (974)
T KOG0959|consen 796 IVSTGVRLNYGTVGLQITV 814 (974)
T ss_pred EeeeeeeeecCcceeEEEE
Confidence 7776666653333334444
No 11
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-30 Score=279.59 Aligned_cols=603 Identities=17% Similarity=0.192 Sum_probs=375.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHh
Q 005555 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (691)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~~ 89 (691)
+.+++|+..+|.+..|+|||+|||+|.||+|||..+.|..++... ||.-||+|..++|+|+|. +..+.|+.+|+.+++
T Consensus 50 L~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskh-gGs~NA~T~~~~T~fyFe-V~~~al~~ALDrFa~ 127 (937)
T COG1025 50 LVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKH-GGSHNASTAGERTAFYFE-VENDALEGALDRFAD 127 (937)
T ss_pred EEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHc-CCccccccCCCceeEEEE-ecHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999998899999776 888999999999999985 477899999999999
Q ss_pred hhhCCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCC--
Q 005555 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPK-- 167 (691)
Q Consensus 90 ~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~G~~~~i~~-- 167 (691)
++.+|.|.++. .++| +..|-+|..+...+-..++++.....+=++||+++.+.|+.+++..
T Consensus 128 ff~~PLf~~e~--~dRE---------------~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs~GN~~TL~~~p 190 (937)
T COG1025 128 FFIEPLFNKEA--LDRE---------------RNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFSTGNLETLSDKP 190 (937)
T ss_pred HHhccccChHH--HHHH---------------HHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccCCCChhhhccCC
Confidence 99999999988 7776 9999999998888888888888888888899999999999999988
Q ss_pred --CCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccCCCCchh-h---HHHHHhhh-------
Q 005555 168 --LTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPR-G---LSLMLRSM------- 234 (691)
Q Consensus 168 --lt~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~-~---~~~~~~~~------- 234 (691)
...+++++||++||.++||+++++|+-+++++.+++. ..|+.++...+..+....|. + ........
T Consensus 191 ~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~-~~F~~Ipn~~~~~p~~p~p~~~d~~t~~ii~i~p~~~~~~ 269 (937)
T COG1025 191 GLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAA-DLFGDIPNRARKIPPIPVPVVTDEQTGKIIHIVPAKPRPR 269 (937)
T ss_pred CchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHH-HHhCcCCCCCCCCCCCCCCCCChHHhCceEEeccCCCCce
Confidence 6789999999999999999999999999999999996 66776654332211111111 0 00000000
Q ss_pred --cccccCCCCcCCcCCchHHHHHHHHHhccCChhhHHHHHHHhccc-----------CCCeeEEEEe-cCcC--chhhH
Q 005555 235 --GKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN-----------NPHCVTVEMQ-PDPE--KASRD 298 (691)
Q Consensus 235 --~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~s~~~~~~l~~~~~~~-----------~~~~~~~~~~-~~~~--~~~~~ 298 (691)
-.|.-++.. ... .......+...|..+..+.+..-|-++.+++ +..-+.|++. ++.+ .-+..
T Consensus 270 L~i~f~i~~~~-~~~-~~~~~~~~s~Lig~es~gsL~~~Lk~~Glit~l~a~~~~~~~n~~~f~is~~LT~~Gl~~~~~V 347 (937)
T COG1025 270 LRIYFPIDDNS-AKF-RSKPDEYLSHLIGNESPGSLLAWLKKQGLITELSAGLDPISGNYGVFAISYELTDKGLAHYDRV 347 (937)
T ss_pred EEEEEEcCCcc-ccc-ccCCHHHHHHHhccCCCchHHHHHHhccchhhhccccccccCCcceEEEEeehhhcchhhHHHH
Confidence 001000000 000 0223455666676554444444444443321 1111223322 2222 22334
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhCCCCChhhhcc-------------------C--------------
Q 005555 299 EAAEKEILAKV-KSSMTKEDLAELARATEELRLKQETPDPPEALRS-------------------V-------------- 344 (691)
Q Consensus 299 ~~~~~~~l~~~-~~~~s~eel~~~k~~~~~~~~~~~~~~s~~~l~~-------------------~-------------- 344 (691)
.....+.++-+ ..++-.-.++++.+-......+.+.-.+...+.. +
T Consensus 348 I~~~F~yl~~l~~~~~~~~~f~Elq~v~~l~f~y~~~t~~~~~~~~l~~~m~~~p~~~~~~~~~~~~~yd~~~~~~~l~~ 427 (937)
T COG1025 348 IALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPSKTRPMDYVSWLADNMEREPVEHTLYASLVLPRYDPKAIQERLAL 427 (937)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccccCChHHHHHHHHHhcccCChhhhhchhhcccccCHHHHHHHHHh
Confidence 56788888877 7888877777776644443333322212110000 0
Q ss_pred --C---------C--------------CCccC-------------------CCCCCCCCCCcc---------------cc
Q 005555 345 --P---------S--------------LSLRD-------------------IPKEPIRVPTEV---------------GD 365 (691)
Q Consensus 345 --~---------~--------------~~~~d-------------------i~~~~~~~~~~~---------------~~ 365 (691)
| . ..+++ +|.....+|.+. ..
T Consensus 428 ~~pen~R~~lis~~~~~~~~a~~~~~py~v~~~~~~~~~~~~~~~~~~~l~lP~~N~fIp~~~~~~~~~~~~~~p~ll~~ 507 (937)
T COG1025 428 MTPENARLWLISKLEEHDKAAYFYGFPYQVDDYTAQPLDAWQQKADSIELSLPEPNPFIPDDVSLIKSEKKFTFPQLLSE 507 (937)
T ss_pred hCccceEEEEecCCCCccccceeecCcceecchhhhhhhhhhcccccccccCCCCCCCCCccccccccccCCCCchhhhc
Confidence 0 0 00000 010101111111 12
Q ss_pred cCCceEEEe-ec--CCCcEEEEEEEeeCCCC-Cc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeecc
Q 005555 366 INGVKVLQH-DL--FTNDVLYTEVVFDMSSL-KQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSS 440 (691)
Q Consensus 366 ~nG~~v~~~-~~--~~~~~v~~~~~f~~g~~-~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~~gg~l~~~~~~~~ 440 (691)
..|.++++. ++ .+-|...+.+.+..-.+ .. ...-...+.+.+.. .-..++.+. ..-||+++++...
T Consensus 508 ~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~-dal~~~~y~-------A~~aG~sfs~~~~- 578 (937)
T COG1025 508 DPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLAN-DALDKLSYQ-------ASLAGLSFSLAAN- 578 (937)
T ss_pred CCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHH-HHHHhhhhH-------HHhcceEEEeecC-
Confidence 235666554 33 34366677777754222 21 11123333343332 233333331 1223444444310
Q ss_pred CCCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhh
Q 005555 441 IHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (691)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (691)
...+.+++++.++.++..+.-+-+.+..-.++ ++++..+..+..+.+++...+.+...+...+.....+..+
T Consensus 579 -------~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~-~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~~ 650 (937)
T COG1025 579 -------SNGLDLTISGFTQRLPQLLRAFLDGLFSLPVD-EDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYW 650 (937)
T ss_pred -------CCceEEEeeccccchHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCCc
Confidence 46789999999999999999999999998888 6899999999999999988888887777776666554321
Q ss_pred HHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcc--c
Q 005555 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVE--R 598 (691)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~--~ 598 (691)
...+.++.+. +...+++..|...++++..+.+.|.|++. .+++.+..+.....++...... .
T Consensus 651 --------s~~e~~~~l~-------~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~-~~da~~l~~~~~~~l~~~~s~~~~~ 714 (937)
T COG1025 651 --------SREERRNALE-------SVSVEEFAAFRDTLLNGVHLEMLVLGNLT-EADATNLAETLQKKLPAIGSTWYRN 714 (937)
T ss_pred --------CHHHHHHHhh-------hccHHHHHHHHHHhhhccceeeeeeccch-HHHHHHHHHHHHhhhcccCCcccCC
Confidence 1122222221 22358889999999999999999999996 5678777776666565332210 0
Q ss_pred ccccccCCCCceEEEe--CcCeeEEEEecccCCCC-CCcchHHHHHHHhhcCccchhhhhcc-CCCCCccceecC
Q 005555 599 VKWKAHLPSANEAIVI--PTQVNYVGKAANIFETG-YKLNGSAYVISKHISNVWLWDRVRVS-GGAYGGFCDFDS 669 (691)
Q Consensus 599 ~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~d~~al~vl~~iLg~srL~~~IRek-GlaYgv~~~~~~ 669 (691)
..... ..++...... +.+.+-.++-+....++ .++.....++.+++ ...+|..||-| .+-|-|++.+..
T Consensus 715 ~~~~~-~~~~~~~~e~~~~~~~~an~~i~~~~~~~~~~~~a~s~Ll~~l~-~~~ff~~LRTkeQLGY~Vfs~~~~ 787 (937)
T COG1025 715 PSVYL-LKGGTRIFETVGGESDSANAAILYPQQYDEIKSSALSSLLGQLI-HPWFFDQLRTKEQLGYAVFSGPRE 787 (937)
T ss_pred Cceec-cCCCeeEeeeccCCcccccceeEeccccchHHHHHHHHHHHHHH-hHHhHHHhhhhhhcceEEEeccee
Confidence 00111 1111222221 12222111112122223 22233334555555 47889999975 788888777653
No 12
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=3.9e-32 Score=300.34 Aligned_cols=292 Identities=16% Similarity=0.158 Sum_probs=220.9
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHh
Q 005555 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (691)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~~ 89 (691)
.+|++||++|+.++.|+|||+|||+|+||++++..+-+.+.+ +.+|+.+||+|+.|+|+|++ .+..++++.+|+++.|
T Consensus 26 l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~l-e~lGG~lNA~Ts~d~T~y~~-~v~~~~l~~aL~lLaD 103 (696)
T TIGR02110 26 LRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWV-QRQGGQVNATTLERTTAFFF-ELPAAALAAGLARLCD 103 (696)
T ss_pred EEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHH-HHhCCeEEEEEcCCeEEEEE-EecHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999863355555 56699999999999999997 5678999999999999
Q ss_pred hhhCCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 005555 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (691)
Q Consensus 90 ~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~G~~~~i~~lt 169 (691)
++++|.|++++ |++| |++|++|++...++|..++.+.+.+.+|++|||+++++|+.++|++++
T Consensus 104 ~l~~P~f~eee--ierE---------------r~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~esL~~it 166 (696)
T TIGR02110 104 MLARPLLTAED--QQRE---------------REVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDSLALPN 166 (696)
T ss_pred HHhCCCCCHHH--HHHH---------------HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHhCcc
Confidence 99999999999 9887 999999999988999999999999999999999999999999999866
Q ss_pred ---HHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccc--cC-CCCchhh-HHH----HHhhhcccc
Q 005555 170 ---FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRE--NN-TGSFPRG-LSL----MLRSMGKWI 238 (691)
Q Consensus 170 ---~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~e~~~~~--~~-~~~~~~~-~~~----~~~~~~~~~ 238 (691)
.++|++||++||+|+||+|+|+||+++++++++++ ..++.+...... .. ......+ ..+ .-.....|.
T Consensus 167 ~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e-~~f~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~l~~~ 245 (696)
T TIGR02110 167 TAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAA-RFGASLAAGGECAQAPPAPLLRFDRLTLAGGSEPRLWLLFA 245 (696)
T ss_pred cchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHH-HHhCCCCCCCCCCCCCCCCCCCCceeEEEecCcceEEEEEe
Confidence 99999999999999999999999999999999996 545443211000 00 0000000 000 000000111
Q ss_pred cCCCCcCCcCCchHHHHHHHHHhccCChhhHHHHHHHhcc-----------cC--CCeeEEEEecC-cCchhhHHHHHHH
Q 005555 239 YDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYIL-----------NN--PHCVTVEMQPD-PEKASRDEAAEKE 304 (691)
Q Consensus 239 ~~~~~~~~l~~~~~~~~l~~~l~~~~s~~~~~~l~~~~~~-----------~~--~~~~~~~~~~~-~~~~~~~~~~~~~ 304 (691)
....+ ......+..+...|.++.++++|..++++.+. .+ .+.+++.+.++ ++..+...+.+.+
T Consensus 246 ~p~~~---~~d~~al~lL~~iLg~g~sSrL~~~LRe~GLaysV~s~~~~~~~g~~lf~I~~~lt~~~~~~~~~v~~~i~~ 322 (696)
T TIGR02110 246 LAGLP---ATARDNVTLLCEFLQDEAPGGLLAQLRERGLAESVAATWLYQDAGQALLALEFSARCISAAAAQQIEQLLTQ 322 (696)
T ss_pred ecCCC---CCChHHHHHHHHHhCCCcchHHHHHHHHCCCEEEEEEeccccCCCCcEEEEEEEEcCCCccCHHHHHHHHHH
Confidence 11111 11223567788888877777899999876322 12 22333443322 3345667778888
Q ss_pred HHHHH-Hh--cCCHHHHHHHHHH
Q 005555 305 ILAKV-KS--SMTKEDLAELARA 324 (691)
Q Consensus 305 ~l~~~-~~--~~s~eel~~~k~~ 324 (691)
+++.+ +. +++.+|++++|..
T Consensus 323 ~L~~L~~~~~~~~~eel~rlk~~ 345 (696)
T TIGR02110 323 WLGALAEQTWAEQLEHYAQLAQR 345 (696)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHh
Confidence 88887 66 7999999999984
No 13
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-32 Score=262.98 Aligned_cols=295 Identities=14% Similarity=0.182 Sum_probs=218.5
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHh
Q 005555 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (691)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~~ 89 (691)
+||.+||++|.+...|+|||||||.|+|+++.+...+=.++ +.+|+.+||+|++|+|+|+. .+.++++++++++|.|
T Consensus 59 VwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEi--eniGahLNAytSReqT~yya-kal~~dv~kavdiLaD 135 (467)
T KOG0960|consen 59 VWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEI--ENIGAHLNAYTSREQTVYYA-KALSKDVPKAVDILAD 135 (467)
T ss_pred EEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHH--HHHHHHhcccccccceeeeh-hhccccchHHHHHHHH
Confidence 68999999999999999999999999999999987744454 77899999999999999995 6688999999999999
Q ss_pred hhhCCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 005555 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (691)
Q Consensus 90 ~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~G~~~~i~~lt 169 (691)
++++..+.+.. +++| |++|+.||+..+.+-..+.++.|+...|+++|.++++.|+.++|++|+
T Consensus 136 Ilqns~L~~s~--IerE---------------R~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~enI~si~ 198 (467)
T KOG0960|consen 136 ILQNSKLEESA--IERE---------------RDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKSIS 198 (467)
T ss_pred HHHhCccchhH--HHHH---------------HHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChhhhhhhhh
Confidence 99999999998 8877 999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccc-----------------cCCCCchhh-HHHHH
Q 005555 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRE-----------------NNTGSFPRG-LSLML 231 (691)
Q Consensus 170 ~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~e~~~~~-----------------~~~~~~~~~-~~~~~ 231 (691)
++||++|-++||.+++|+|..+|.++++++.++++ +.|+.++..... .++...|.. +++..
T Consensus 199 r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~-k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd~lP~a~~AiAV 277 (467)
T KOG0960|consen 199 RADLKDYINTHYKASRMVLAAAGGVKHEELVKLAE-KYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDDLPLAHIAIAV 277 (467)
T ss_pred HHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHH-HHcCCCcccccCcCCCCCCCccccCceeeecCCCCchhheeeeE
Confidence 99999999999999999999999999999999997 667664321110 011111210 00000
Q ss_pred hhhcccccCCCC-----------cCCcCC--chHHHHHHHHHhccCChhhHHHHHHHhcccCCCeeEEEEecCcCchhhH
Q 005555 232 RSMGKWIYDMNP-----------FEPLKY--EKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRD 298 (691)
Q Consensus 232 ~~~~~~~~~~~~-----------~~~l~~--~~~~~~l~~~l~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (691)
.+ .+|.+++.- |+.... ...-..|.+.+.+......|..+---|--++.+++++++. ++...+.+
T Consensus 278 EG-~~w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt~YkDTGLwG~y~V~~-~~~~iddl 355 (467)
T KOG0960|consen 278 EG-VSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNTSYKDTGLWGIYFVTD-NLTMIDDL 355 (467)
T ss_pred ec-CCcCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhcccccccceeEEEEec-ChhhHHHH
Confidence 00 133332210 000000 0000112222221111111221111122257778777665 66666777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005555 299 EAAEKEILAKVKSSMTKEDLAELARATEE 327 (691)
Q Consensus 299 ~~~~~~~l~~~~~~~s~eel~~~k~~~~~ 327 (691)
...+.++...+...+|++|++|+|++++.
T Consensus 356 ~~~vl~eW~rL~~~vteaEV~RAKn~Lkt 384 (467)
T KOG0960|consen 356 IHSVLKEWMRLATSVTEAEVERAKNQLKT 384 (467)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 77888888888889999999999998875
No 14
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.5e-30 Score=249.40 Aligned_cols=291 Identities=13% Similarity=0.058 Sum_probs=230.4
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC
Q 005555 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (691)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~~gg~l~~~~~~~~~~ 442 (691)
+++||++|..-+. .....+|.+|+++||..+ ++..+.++|.++|.++||++++...+..++|..|+.+|++++
T Consensus 38 tL~NGlrVaTE~~-~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytS----- 111 (467)
T KOG0960|consen 38 TLPNGLRVATEHN-SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTS----- 111 (467)
T ss_pred EcCCCcEEEeccC-CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhccccc-----
Confidence 5899999987765 666889999999999876 667788888888888899999999999999999999999999
Q ss_pred CCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhh
Q 005555 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTD--QQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (691)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~--~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (691)
+|.+.|+++|+++++++++++|+||++|+.+.+ .|+.+.++.++.+..+... ..+..+.+-+.-+.+.|
T Consensus 112 -----ReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~----~eVVfdhLHatafQgtP 182 (467)
T KOG0960|consen 112 -----REQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNH----QEVVFDHLHATAFQGTP 182 (467)
T ss_pred -----ccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999985 3588888888888876553 34777777777787888
Q ss_pred HHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCccccc
Q 005555 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (691)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 600 (691)
+++.+- +..+.|+.+.+ +||++|.+.+|.+.+|+++-+|.+++ ++++++++++|++++....+..++
T Consensus 183 L~~til--Gp~enI~si~r----------~DL~~yi~thY~~~RmVlaaaGgV~H-e~lv~la~k~fg~~~~~~~~~~~~ 249 (467)
T KOG0960|consen 183 LGRTIL--GPSENIKSISR----------ADLKDYINTHYKASRMVLAAAGGVKH-EELVKLAEKYFGDLSKLQTGDKVP 249 (467)
T ss_pred cccccc--ChhhhhhhhhH----------HHHHHHHHhcccCccEEEEecCCcCH-HHHHHHHHHHcCCCcccccCcCCC
Confidence 876443 33566666644 89999999999999999999999975 789999999999987533221111
Q ss_pred -ccccCCCCceEEEe--CcCeeEEEEecccCCCCCCcchHHHHHHHhhc------------CccchhhhhccCCCCCccc
Q 005555 601 -WKAHLPSANEAIVI--PTQVNYVGKAANIFETGYKLNGSAYVISKHIS------------NVWLWDRVRVSGGAYGGFC 665 (691)
Q Consensus 601 -~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg------------~srL~~~IRekGlaYgv~~ 665 (691)
.++..-...++... +.|..+++++..++++.|||+.+++|+++|+| +|+|-+.+-+..||=+..+
T Consensus 250 ~~~~~~FtgsEvR~rdd~lP~a~~AiAVEG~~w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqs 329 (467)
T KOG0960|consen 250 LVPPARFTGSEVRVRDDDLPLAHIAIAVEGVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQS 329 (467)
T ss_pred CCCCccccCceeeecCCCCchhheeeeEecCCcCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhh
Confidence 11111122333333 35788999999999999999999999999999 5889888888777766544
Q ss_pred eecCCCceEEEEEeeCC
Q 005555 666 DFDSHSGVILIFILSGP 682 (691)
Q Consensus 666 ~~~~~~g~~~f~~y~~p 682 (691)
+-..+..++.|.+|.-+
T Consensus 330 Fnt~YkDTGLwG~y~V~ 346 (467)
T KOG0960|consen 330 FNTSYKDTGLWGIYFVT 346 (467)
T ss_pred hhcccccccceeEEEEe
Confidence 44345555555555433
No 15
>PRK15101 protease3; Provisional
Probab=99.96 E-value=1e-27 Score=286.21 Aligned_cols=298 Identities=14% Similarity=0.044 Sum_probs=223.5
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCC-HHHHHHHHhhcccceEEeeeeccC
Q 005555 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLS-FVQLDQLIGRKTGGISVYPFTSSI 441 (691)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~-~~el~~~ie~~gg~l~~~~~~~~~ 441 (691)
+++||++|++.++++.++|.+++++++|+..+ ++..+++||++||++.||++++ ..++++.++.+||++|++|+
T Consensus 48 ~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~---- 123 (961)
T PRK15101 48 RLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTA---- 123 (961)
T ss_pred EeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccceEC----
Confidence 68999999999999999999999999999875 5567888887777778999996 68999999999999999999
Q ss_pred CCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhh
Q 005555 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQ--QRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (691)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~--e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (691)
.+.|+|++++++++++.+|++++|++.+|.|++. ++++.++.++..... +++...+...+....+++|
T Consensus 124 ------~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~----~~~~~~~~~~~~~~~~~~h 193 (961)
T PRK15101 124 ------SYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMAR----SRDGMRMAQVSAETINPAH 193 (961)
T ss_pred ------CCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHhhCCCCC
Confidence 7999999999999999999999999999999953 255555555554432 2345566667777788899
Q ss_pred hHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccc
Q 005555 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (691)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (691)
||++...| +.++|+.+.. ..+.++|++||+++|.|+||+++|+||++ .+++.++++++|+.||....+.+.
T Consensus 194 p~~~~~~G--~~etl~~~~~------~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~-~~~l~~~~~~~F~~~~~~~~~~~~ 264 (961)
T PRK15101 194 PGSRFSGG--NLETLSDKPG------SKLQDALVDFYQRYYSANLMKAVIYSNQP-LPELAKLAADTFGRVPNKNASVPE 264 (961)
T ss_pred CcccCCCC--CHHHhhcCCc------hHHHHHHHHHHHHhCcccceEEEEEcCCC-HHHHHHHHHHHhccCCCCCCCCCC
Confidence 98765444 4556654311 12569999999999999999999999996 688999999999999865422111
Q ss_pred -cccccCC--CCceEEEeC-cCeeEEEEecccCCCCCC-cchHHHHHHHhhc---CccchhhhhccCCCCCccceecCC-
Q 005555 600 -KWKAHLP--SANEAIVIP-TQVNYVGKAANIFETGYK-LNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDSH- 670 (691)
Q Consensus 600 -~~~~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~-d~~al~vl~~iLg---~srL~~~IRekGlaYgv~~~~~~~- 670 (691)
..+...+ ........| .+++.+.++++.+...+. +..+..+++.+|| .++|+..|+++|+|||++++++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~p~~~~~~~~~~~~~l~~ll~~~~~g~l~~~L~~~gla~~v~s~~~~~~ 344 (961)
T PRK15101 265 ITVPVVTDAQKGIIIHYVPAQPRKVLRVEFRIDNNSAKFRSKTDEYISYLIGNRSPGTLSDWLQKQGLAEGISAGADPMV 344 (961)
T ss_pred CCCCCCCHHHcCeEEEEEECCCCcEEEEEEecCCcHHHHhhCHHHHHHHHhcCCCCCcHHHHHHHcCccceeeecccccc
Confidence 1111111 111222223 345566677776654322 3346788999998 567888888789999999886532
Q ss_pred -CceEEEEEeeCCCh
Q 005555 671 -SGVILIFILSGPQL 684 (691)
Q Consensus 671 -~g~~~f~~y~~p~~ 684 (691)
.+.+.|.++..+.+
T Consensus 345 ~~~~g~f~i~~~~~~ 359 (961)
T PRK15101 345 DRNSGVFAISVSLTD 359 (961)
T ss_pred CCCceEEEEEEEcCh
Confidence 44566777766544
No 16
>PTZ00432 falcilysin; Provisional
Probab=99.91 E-value=2.2e-23 Score=245.90 Aligned_cols=285 Identities=9% Similarity=0.023 Sum_probs=205.5
Q ss_pred ccCCceEEEeecCC--CcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcc--cceEEeeeecc
Q 005555 365 DINGVKVLQHDLFT--NDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKT--GGISVYPFTSS 440 (691)
Q Consensus 365 ~~nG~~v~~~~~~~--~~~v~~~~~f~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~~g--g~l~~~~~~~~ 440 (691)
..||++|++.+.+. .+.+.+.++|++|+. +..+++|+++||+..||++++..++...++..| +.+||+|+
T Consensus 97 ~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~~---d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T~--- 170 (1119)
T PTZ00432 97 KKTGLQVISLKTNDSSGKEMCFDFYVPTPPH---NDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTF--- 170 (1119)
T ss_pred cCCCCEEEEEecCCCccceeEEEEEecCCCC---CCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccCC---
Confidence 56999999887443 467889999999862 335777777777778999999999999998866 88999998
Q ss_pred CCCCCCCeeEEEEEEEeccc-cHHHHHHHHHHHHhcCCCCcHHH-H--------------------------------HH
Q 005555 441 IHGKEDPCCCMVVRGKAMAG-QAEDLFNLFNCVLQEVQLTDQQR-F--------------------------------KQ 486 (691)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~-~~~~~l~ll~dil~~p~f~~~e~-~--------------------------------~~ 486 (691)
.|+|+|++.++++ ++..+++++.|++++|.|++.+. + +.
T Consensus 171 -------~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kg 243 (1119)
T PTZ00432 171 -------KDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSG 243 (1119)
T ss_pred -------CCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhh
Confidence 7999999999986 69999999999999999975321 0 33
Q ss_pred HHHHHHHHHhhhhccCcHHHHHHHHHhccChhhhHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcE
Q 005555 487 FVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCL 566 (691)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~ 566 (691)
++.+++.... +++..++...+...++ +++|++..+|. .+.|..+ +.++|++||+++|.|+|++
T Consensus 244 VV~~Emk~~~----~~p~~~~~~~~~~~lf-~~pY~~~~~G~--~~~I~~l----------t~e~l~~Fh~~~Y~P~N~~ 306 (1119)
T PTZ00432 244 IVYSEMKKRF----SDPLSFGYSVIYQNLF-SNVYKYDSGGD--PKDIVEL----------TYEELVEFYKTYYGPKTAT 306 (1119)
T ss_pred HHHHHHHHhh----CCHHHHHHHHHHHHHh-CCCCCCCCCCC--hHhhccC----------CHHHHHHHHHHhcCccceE
Confidence 4444444432 4566778887777777 88888766666 3455444 3499999999999999999
Q ss_pred EEEEeCccchhhHHHHHHHHHhcCCCCCCcc-------cc-cccc-cCCCCceEEE--e---CcCeeEEEEe-cccCC--
Q 005555 567 INMTADGKNLKNSERFVGKFLDMLPTNSPVE-------RV-KWKA-HLPSANEAIV--I---PTQVNYVGKA-ANIFE-- 629 (691)
Q Consensus 567 v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~-------~~-~~~~-~~~~~~~~~~--~---~~~~~~v~~~-~~~~~-- 629 (691)
++|+||++ .+++.+.++++|+.+|...... +. +.+. ........+. . +..+..+.++ |+.++
T Consensus 307 l~v~Gdid-~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~ 385 (1119)
T PTZ00432 307 VYFYGPND-VTERLEFVDNYLTKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKH 385 (1119)
T ss_pred EEEEcCCC-HHHHHHHHHHHHhhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCcc
Confidence 99999996 6889999999998887542100 00 0010 0001111111 1 2234445454 76532
Q ss_pred ---------CCC-CcchHHHHHHHhhc---CccchhhhhccCCCCCc-cceecCCCceEEEEEee
Q 005555 630 ---------TGY-KLNGSAYVISKHIS---NVWLWDRVRVSGGAYGG-FCDFDSHSGVILIFILS 680 (691)
Q Consensus 630 ---------~~~-~d~~al~vl~~iLg---~srL~~~IRekGlaYgv-~~~~~~~~g~~~f~~y~ 680 (691)
..+ +++.++.||+++|| +|+|+++|||+|++|++ ++++....+.+.|.++.
T Consensus 386 ~~~~~~~~~~~d~~~~~AL~VLs~lLggg~sS~L~q~LrE~GLa~svv~~~~~~~~~~~~f~I~l 450 (1119)
T PTZ00432 386 NGSKDYDKSLIDPVDYLALLVLNYLLLGTPESVLYKALIDSGLGKKVVGSGLDDYFKQSIFSIGL 450 (1119)
T ss_pred ccccccccccCCHHHHHHHHHHHHHHcCCCccHHHHHHHhcCCCcCCCcCcccCCCCceEEEEEE
Confidence 233 68999999999998 79999999999999995 45555455555666654
No 17
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.5e-23 Score=204.15 Aligned_cols=318 Identities=17% Similarity=0.272 Sum_probs=230.4
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHh
Q 005555 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (691)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~~ 89 (691)
+.++.||++|...-.|++||||.|.|+.|.+++.++++.++ +..|+.+.+.+++|.+.|.+ ++..+++..++.+++|
T Consensus 50 lyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~L--E~~GGn~~cqsSRetm~Yaa-s~~~~~v~sm~~lLad 126 (472)
T KOG2067|consen 50 LYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAEL--EKLGGNCDCQSSRETMMYAA-SADSDGVDSMVELLAD 126 (472)
T ss_pred EEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHH--HHhCCcccccccHhhhHHHH-HhhhcccHHHHHHHHH
Confidence 46899999999999999999999999999999999877777 77899999999999999984 6788999999999999
Q ss_pred hhhCCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 005555 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (691)
Q Consensus 90 ~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~G~~~~i~~lt 169 (691)
.+.+|.|++++ +..+ |..|.-|+...-.+|...+.+-++.+.|.+++.+.+..+..+.|+.|+
T Consensus 127 tV~~P~~~d~e--v~~~---------------~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~I~ 189 (472)
T KOG2067|consen 127 TVLNPKFTDQE--VEEA---------------RRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKIN 189 (472)
T ss_pred HHhcccccHHH--HHHH---------------HHhhhheccccccCchhhHHHHHHHHHhccCcccccccCChhhhhhhh
Confidence 99999999999 7776 788888888777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhccccccccc---ccccCCCCchhhHH------------------
Q 005555 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFS---LRENNTGSFPRGLS------------------ 228 (691)
Q Consensus 170 ~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~e~~---~~~~~~~~~~~~~~------------------ 228 (691)
.+.|..|-+.+|+|++|++..+| ++++++++.++ ..+..++.. ..+.....+..|..
T Consensus 190 ~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~-~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~g~EltHv 267 (472)
T KOG2067|consen 190 REVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAE-KLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTGGPELTHV 267 (472)
T ss_pred HHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHH-HHhccCCccCCCCcccchhhccccccccCCCCccccCccceeee
Confidence 99999999999999999999999 99999999997 434433221 00000001100000
Q ss_pred -HHHhhhcccccCCCCcCCcCCchHHHHHHHHHhccC-------C----hhhHHHHHHHhcc-----------cCCCeeE
Q 005555 229 -LMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEG-------S----KAVFSPLIEKYIL-----------NNPHCVT 285 (691)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~-------s----~~~~~~l~~~~~~-----------~~~~~~~ 285 (691)
+.+. ..+|.++ | ..++..|.-.+.++. + +++|-++.++|.- .+..-+.
T Consensus 268 ~lg~E-g~~~~de-D-------~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfg 338 (472)
T KOG2067|consen 268 VLGFE-GCSWNDE-D-------FVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFG 338 (472)
T ss_pred eEeec-cCCCCCh-h-------HHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeE
Confidence 0000 0122111 1 123333433333211 1 1344444444210 1222233
Q ss_pred EEEecCcCchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hC-----------------CCCChhhhccCCC
Q 005555 286 VEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLK--QE-----------------TPDPPEALRSVPS 346 (691)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~--~~-----------------~~~s~~~l~~~~~ 346 (691)
|....+|..+....+.+.+++..+..+++++|++|+|+|++...-. .+ +.-+.+.+..+.+
T Consensus 339 i~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~rk~p~e~~~~Ie~ 418 (472)
T KOG2067|consen 339 IYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGERKPPDEFIKKIEQ 418 (472)
T ss_pred EeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCcCCHHHHHHHHHh
Confidence 4444555556667778888888888899999999999998853221 11 1122245566778
Q ss_pred CCccCCCCCCCC
Q 005555 347 LSLRDIPKEPIR 358 (691)
Q Consensus 347 ~~~~di~~~~~~ 358 (691)
++++||.+...+
T Consensus 419 lt~~DI~rva~k 430 (472)
T KOG2067|consen 419 LTPSDISRVASK 430 (472)
T ss_pred cCHHHHHHHHHH
Confidence 999999766555
No 18
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.6e-22 Score=195.39 Aligned_cols=298 Identities=14% Similarity=0.045 Sum_probs=219.5
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC
Q 005555 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (691)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~~gg~l~~~~~~~~~~ 442 (691)
+++||++|...+.+. +.+.+.++++.|+.-+ ....++++|.+-|.+..|.+++..++...+|.+||....+++
T Consensus 29 tL~NGlkvase~~pg-~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cqsS----- 102 (472)
T KOG2067|consen 29 TLPNGLKVASENTPG-QFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQSS----- 102 (472)
T ss_pred ecCCccEEeccCCCC-CceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccccc-----
Confidence 689999998776664 5999999999999876 555789999888888899999999999999999999999998
Q ss_pred CCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhhHH
Q 005555 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWIS 522 (691)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 522 (691)
+|.+.|.+++.+++++.+++||+|.+++|.|.| +++.......+-.+++-.. .|..+..+..-..-+.+..++
T Consensus 103 -----Retm~Yaas~~~~~v~sm~~lLadtV~~P~~~d-~ev~~~~~~v~~E~~el~~-~Pe~lL~e~iH~Aay~~ntlg 175 (472)
T KOG2067|consen 103 -----RETMMYAASADSDGVDSMVELLADTVLNPKFTD-QEVEEARRAVKYEIEELWM-RPEPLLTEMIHSAAYSGNTLG 175 (472)
T ss_pred -----HhhhHHHHHhhhcccHHHHHHHHHHHhcccccH-HHHHHHHHhhhhecccccc-CchhhHHHHHHHHHhccCccc
Confidence 899999999999999999999999999999996 4343333333333333333 334455544433333332222
Q ss_pred HHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCccccccc
Q 005555 523 EQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWK 602 (691)
Q Consensus 523 ~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 602 (691)
.+...- .+.+..+ ..+.|.+|.+.+|+|++|++.-+|=- + +++++.++++++.||+...++.....
T Consensus 176 ~pl~cp--~~~i~~I----------~~~~l~~yl~~~ytp~rmVlA~vGV~-h-eelv~~~~~~~~~~~s~~~p~i~~~~ 241 (472)
T KOG2067|consen 176 LPLLCP--EENIDKI----------NREVLEEYLKYFYTPERMVLAGVGVE-H-EELVEIAEKLLGDLPSTKVPPIDESK 241 (472)
T ss_pred ccccCC--hhhhhhh----------hHHHHHHHHHhcCChhheEeeecCCC-H-HHHHHHHHHHhccCCccCCCCcccch
Confidence 222111 1222222 23889999999999999999999866 4 68999999999999975443222222
Q ss_pred ccCCCCceEEEeCc-------CeeEEEEecccCCCCCCcchHHHHHHHhhc--------------Cccchhhhhcc-CCC
Q 005555 603 AHLPSANEAIVIPT-------QVNYVGKAANIFETGYKLNGSAYVISKHIS--------------NVWLWDRVRVS-GGA 660 (691)
Q Consensus 603 ~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~d~~al~vl~~iLg--------------~srL~~~IRek-Gla 660 (691)
.+..+.-..+..+. ...++++|+.++++.++|.+++.||+..|| -||||.++=-+ -+.
T Consensus 242 aQYtGG~~~~~~d~~~~~~g~EltHv~lg~Eg~~~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv 321 (472)
T KOG2067|consen 242 AQYTGGELKIDTDAPQVTGGPELTHVVLGFEGCSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWV 321 (472)
T ss_pred hhccccccccCCCCccccCccceeeeeEeeccCCCCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHH
Confidence 22222111111111 356899999999999999999999999998 27999999887 899
Q ss_pred CCccceecCCCceEEEEEeeCCChhhhh
Q 005555 661 YGGFCDFDSHSGVILIFILSGPQLVKNT 688 (691)
Q Consensus 661 Ygv~~~~~~~~g~~~f~~y~~p~~~~t~ 688 (691)
|++-++..++.+++.|.+|....+..+-
T Consensus 322 ~sctAfnhsy~DtGlfgi~~s~~P~~a~ 349 (472)
T KOG2067|consen 322 YSCTAFNHSYSDTGLFGIYASAPPQAAN 349 (472)
T ss_pred HHhhhhhccccCCceeEEeccCCHHHHH
Confidence 9999988888777888888666555443
No 19
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.8e-18 Score=190.04 Aligned_cols=293 Identities=13% Similarity=0.067 Sum_probs=220.0
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCC-HHHHHHHHhhcccceEEeeeeccC
Q 005555 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLS-FVQLDQLIGRKTGGISVYPFTSSI 441 (691)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~-~~el~~~ie~~gg~l~~~~~~~~~ 441 (691)
.++||++++++.+|..+.....+.+.+|+.++ ++.++++||++||.+.||++++ ...+...+..+||+-||+|.
T Consensus 28 ~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~T~---- 103 (937)
T COG1025 28 KLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTA---- 103 (937)
T ss_pred ECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccccccC----
Confidence 48999999999999999999999999999865 6788999999988889999985 57999999999999999998
Q ss_pred CCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhh
Q 005555 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTD--QQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (691)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~--~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (691)
.+.|+|++.+..+.++.+|+-+++++.+|-|+. .+|++..+.++-.+- +.+++ ............++|
T Consensus 104 ------~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~---~~~D~-~R~~~~~~~~~np~H 173 (937)
T COG1025 104 ------GERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMN---LTSDG-WRMYQVQALTANPGH 173 (937)
T ss_pred ------CCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcC---cCchH-HHHHHHHHhhcCCCC
Confidence 689999999999999999999999999999983 235555555444433 33343 355566677888999
Q ss_pred hHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccc
Q 005555 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (691)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (691)
|+++-- .|.+++|.+..+ ..+.+.|++||+++|.++||.++|-|+-. ++++.+++.++|+.+|......+.
T Consensus 174 P~srFs--~GN~~TL~~~p~------~~v~~el~ef~~~~YSa~~M~lviyg~q~-ldeL~~~a~~~F~~Ipn~~~~~p~ 244 (937)
T COG1025 174 PLSKFS--TGNLETLSDKPG------LVVQQELKEFHEKHYSANNMKLVIYGNQP-LDELAKLAADLFGDIPNRARKIPP 244 (937)
T ss_pred CccccC--CCChhhhccCCC------chHHHHHHHHHHHhcChhheEEEEecCCC-HHHHHHHHHHHhCcCCCCCCCCCC
Confidence 987633 344566654210 13669999999999999999999999994 899999999999999865433221
Q ss_pred -ccccc--CCCCceEEEeCc-CeeEEEEecccCCCCCCc-chHHHHHHHhhc---CccchhhhhccCCCCCccceecCCC
Q 005555 600 -KWKAH--LPSANEAIVIPT-QVNYVGKAANIFETGYKL-NGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDSHS 671 (691)
Q Consensus 600 -~~~~~--~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~d-~~al~vl~~iLg---~srL~~~IRekGlaYgv~~~~~~~~ 671 (691)
+.++. ....+.+...|. +...+.+.|+.++..++. .-....+.++|| .+=|---|-++||+=++.+......
T Consensus 245 ~p~p~~~d~~t~~ii~i~p~~~~~~L~i~f~i~~~~~~~~~~~~~~~s~Lig~es~gsL~~~Lk~~Glit~l~a~~~~~~ 324 (937)
T COG1025 245 IPVPVVTDEQTGKIIHIVPAKPRPRLRIYFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLAWLKKQGLITELSAGLDPIS 324 (937)
T ss_pred CCCCCCChHHhCceEEeccCCCCceEEEEEEcCCcccccccCCHHHHHHHhccCCCchHHHHHHhccchhhhcccccccc
Confidence 11111 112233334443 345566778887766665 567888889999 3445578888999999888766543
Q ss_pred -ceEEEEEe
Q 005555 672 -GVILIFIL 679 (691)
Q Consensus 672 -g~~~f~~y 679 (691)
+.+.|.+.
T Consensus 325 ~n~~~f~is 333 (937)
T COG1025 325 GNYGVFAIS 333 (937)
T ss_pred CCcceEEEE
Confidence 34434443
No 20
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.79 E-value=1.5e-19 Score=166.04 Aligned_cols=132 Identities=30% Similarity=0.444 Sum_probs=120.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHh
Q 005555 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (691)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~~ 89 (691)
++|++|++.|+.++.|++|+++||+++||++++..+ +.+.+ ...|+.+++.|+.|+|.|.+ ++..++++.+|+++.+
T Consensus 17 l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~-l~~~l-~~~G~~~~~~t~~d~t~~~~-~~~~~~~~~~l~~l~~ 93 (149)
T PF00675_consen 17 LVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDE-LQEEL-ESLGASFNASTSRDSTSYSA-SVLSEDLEKALELLAD 93 (149)
T ss_dssp EEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHH-HHHHH-HHTTCEEEEEEESSEEEEEE-EEEGGGHHHHHHHHHH
T ss_pred EEEeeccCCCCCCCCchhhhhhhhcccccchhhhhh-hHHHh-hhhccccceEecccceEEEE-EEecccchhHHHHHHH
Confidence 579999999999999999999999999999999966 55555 55699999999999999996 5678999999999999
Q ss_pred hhhCCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCC
Q 005555 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGD 161 (691)
Q Consensus 90 ~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~G~ 161 (691)
++++|.|++++ |+++ |..+..|++....+|...+.+.+.+.+|.++||++++.|+
T Consensus 94 ~~~~P~f~~~~--~~~~---------------r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 94 MLFNPSFDEEE--FERE---------------REQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp HHHSBGGCHHH--HHHH---------------HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred HHhCCCCCHHH--HHHH---------------HHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999 9887 9999999999999999999999999999999999998876
No 21
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.7e-17 Score=185.85 Aligned_cols=284 Identities=13% Similarity=0.079 Sum_probs=214.3
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCH-HHHHHHHhhcccceEEeeeeccC
Q 005555 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSF-VQLDQLIGRKTGGISVYPFTSSI 441 (691)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~-~el~~~ie~~gg~l~~~~~~~~~ 441 (691)
++.||+++++..+|+.+.....+-+.+||+.+ ++.++++||++||.+.||++++- .+....+...||+-||+|+
T Consensus 32 ~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~T~---- 107 (974)
T KOG0959|consen 32 ELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAYTD---- 107 (974)
T ss_pred EecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccccc----
Confidence 47899999999999888888889999999855 77899999999999999999875 5788889999999999998
Q ss_pred CCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhhH
Q 005555 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWI 521 (691)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 521 (691)
.+.|+|++-+-.++++.||+.+++.+.+|.|. ++...+-+...-+....+...+ .........+...++|++
T Consensus 108 ------~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~-~~a~eREv~AVdSE~~~nl~~D-~wr~~ql~~~l~~~~hp~ 179 (974)
T KOG0959|consen 108 ------SEHTNYYFDVQHDHLEGALDRFAQFFSDPLFN-KSATEREVGAVDSEHEKNLNSD-GWRFDQLLRSLSNPGHPY 179 (974)
T ss_pred ------cccceEEEecchHHHHHHHHHHHHHhhCcccC-hHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHhcCCCCcc
Confidence 69999999999999999999999999999998 4444433344444444444433 335666777778889988
Q ss_pred HHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccccc
Q 005555 522 SEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW 601 (691)
Q Consensus 522 ~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 601 (691)
+.-. ++..++|+...+ + . .+.+.|..||+++|.+++|.++|.|+.+ ++.+..++...|+.++....+.+ .+
T Consensus 180 ~kF~--tGN~~tL~~~p~---~-~-~~r~~L~kF~k~~Yssn~M~l~i~G~es-lD~Le~lv~~~F~~i~N~~~~~p-~f 250 (974)
T KOG0959|consen 180 SKFS--TGNKKTLLEGPR---E-I-DLRDELLKFYKNWYSSNIMTLVIVGKES-LDVLESLVTRLFDEISNKKKPRP-VF 250 (974)
T ss_pred hhcc--ccchhhhhhccc---c-c-hHHHHHHHHHHhhcccccceEEEEcCCC-hhHHHHHHHHHcccccccCCCCC-cc
Confidence 7643 344566654422 1 1 5779999999999999999999999984 78888899999998876554322 22
Q ss_pred ccc--CC--CCceEEEeCcC-eeEEEEecccCCCC-CCcchHHHHHHHhhc---CccchhhhhccCCCCCccceec
Q 005555 602 KAH--LP--SANEAIVIPTQ-VNYVGKAANIFETG-YKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFD 668 (691)
Q Consensus 602 ~~~--~~--~~~~~~~~~~~-~~~v~~~~~~~~~~-~~d~~al~vl~~iLg---~srL~~~IRekGlaYgv~~~~~ 668 (691)
+.. .+ -+..+...|.. ...+.+.|+.++.. +-+.-+...+.+++| .+-|...||-+|+|=+..+...
T Consensus 251 ~~~p~~~e~~~~~~~v~pik~~~~l~is~~~p~~~~~y~~kP~~y~~hLigheg~GSL~~~Lk~~gw~~sl~a~~~ 326 (974)
T KOG0959|consen 251 PEPPFLPEELKKLVRVVPIKDGRSLMISWPVPPLNHHYKSKPLRYLSHLIGHEGPGSLLSYLKRLGWATSLEAGIP 326 (974)
T ss_pred cCCCCChHHhCcEEEEEeccccceEEEEEecCCcccccccCcHHHHHHHhccCCcchHHHHHHHhhchheeecCCC
Confidence 211 11 12334445554 44566778877643 345678888899999 4567789999999987766654
No 22
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.61 E-value=7.7e-15 Score=134.77 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=119.3
Q ss_pred eEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCCCCCCCe
Q 005555 370 KVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPC 448 (691)
Q Consensus 370 ~v~~~~~~~~~~v~~~~~f~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~~gg~l~~~~~~~~~~~~~~~~ 448 (691)
+|++.+.+..+++.+.++|++|+..+ ....++++++++|+..||++++..++.+.++..||.++++++ +
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~----------~ 70 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTS----------R 70 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEE----------S
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEec----------c
Confidence 68889999999999999999999865 555677777777777899999999999999999999999999 8
Q ss_pred eEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhhHHHHhch
Q 005555 449 CCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGG 527 (691)
Q Consensus 449 ~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g 527 (691)
+++.|++++++++++.+|+++++++.+|.|++ +.+.+.+.+....+.+... ++..++...+.+..+.+++|+.+..|
T Consensus 71 d~t~~~~~~~~~~~~~~l~~l~~~~~~P~f~~-~~~~~~r~~~~~ei~~~~~-~~~~~~~~~l~~~~f~~~p~~~~~~~ 147 (149)
T PF00675_consen 71 DSTSYSASVLSEDLEKALELLADMLFNPSFDE-EEFEREREQILQEIEEIKE-NPQELAFEKLHSAAFRGHPYGNPLLG 147 (149)
T ss_dssp SEEEEEEEEEGGGHHHHHHHHHHHHHSBGGCH-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSGGGSHSS-
T ss_pred cceEEEEEEecccchhHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 99999999999999999999999999999994 5455444444444444433 34668888888888888888766544
No 23
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.57 E-value=3.2e-14 Score=141.08 Aligned_cols=174 Identities=17% Similarity=0.130 Sum_probs=151.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHh
Q 005555 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (691)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~~ 89 (691)
++|++|||+|+.++.|++|+|....++-++.++...+.+.. +..|+.++.++++|+..|.+ ++..++++-.|.+|.+
T Consensus 48 l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~s--e~~GG~Lss~~tRe~~~~tv-t~lrd~~~~~l~~L~~ 124 (429)
T KOG2583|consen 48 LAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRES--EQLGGTLSSTATRELIGLTV-TFLRDDLEYYLSLLGD 124 (429)
T ss_pred EEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhh--HhhCceeeeeeecceEEEEE-EEecccHHHHHHHHHH
Confidence 57999999999999999999999999999999999877776 77799999999999999996 6688999999999999
Q ss_pred hhhCCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 005555 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (691)
Q Consensus 90 ~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~G~~~~i~~lt 169 (691)
.+..|.|.+++ +.... -..+..++ .+.+|...+.++++++.|.+ ..+.+....--.+.+++
T Consensus 125 V~~~paFkPwE--l~D~~--------------~~ti~~~l--~~~t~~~~a~e~lH~aAfRn-gLgnslY~p~~~vg~vs 185 (429)
T KOG2583|consen 125 VLDAPAFKPWE--LEDVV--------------LATIDADL--AYQTPYTIAIEQLHAAAFRN-GLGNSLYSPGYQVGSVS 185 (429)
T ss_pred hhcccCcCchh--hhhhh--------------hhhhHHHh--hhcChHHHHHHHHHHHHHhc-ccCCcccCCcccccCcc
Confidence 99999999999 55431 02333333 35699999999999999987 78877655555789999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhc
Q 005555 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEA 206 (691)
Q Consensus 170 ~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~~~ 206 (691)
.++|++|-.++|...|+.++-+| +|++.++.+.++.
T Consensus 186 s~eL~~Fa~k~fv~gn~~lvg~n-vd~~~L~~~~~~~ 221 (429)
T KOG2583|consen 186 SSELKDFAAKHFVKGNAVLVGVN-VDHDDLKQFADEY 221 (429)
T ss_pred HHHHHHHHHHHhhccceEEEecC-CChHHHHHHHHHh
Confidence 99999999999999999999999 9999999998733
No 24
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.47 E-value=1.8e-13 Score=130.37 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCC---Ccccccccc--cCCCCceEEEe--CcCeeEE
Q 005555 549 SSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNS---PVERVKWKA--HLPSANEAIVI--PTQVNYV 621 (691)
Q Consensus 549 ~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~--~~~~~~~~~~~--~~~~~~v 621 (691)
.++|++||+++|.|+||+++|+||++ .+++.+.++++|+.|+... ......... ........+.. +.++..+
T Consensus 4 ~e~l~~f~~~~y~p~n~~l~i~Gd~~-~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 82 (184)
T PF05193_consen 4 LEDLRAFYKKFYRPSNMTLVIVGDID-PDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQSIV 82 (184)
T ss_dssp HHHHHHHHHHHSSGGGEEEEEEESSG-HHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSSEEE
T ss_pred HHHHHHHHHHhcCccceEEEEEcCcc-HHHHHHHHHhhhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 48999999999999999999999996 5789999999999998543 111111111 11112222222 3367788
Q ss_pred EEecccCCC-CCCcchHHHHHHHhhc---Cccchhhhhcc-CCCCCccceecCCC--ceEEEEEeeCCC-hhhhh
Q 005555 622 GKAANIFET-GYKLNGSAYVISKHIS---NVWLWDRVRVS-GGAYGGFCDFDSHS--GVILIFILSGPQ-LVKNT 688 (691)
Q Consensus 622 ~~~~~~~~~-~~~d~~al~vl~~iLg---~srL~~~IRek-GlaYgv~~~~~~~~--g~~~f~~y~~p~-~~~t~ 688 (691)
.+++++++. ++++..++.+++.+|+ +|+|+.++|++ |++|+++++..... |.+.+++...|+ +.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (184)
T PF05193_consen 83 SIAFPGPPIKDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPENLDEAI 157 (184)
T ss_dssp EEEEEEEETGTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGGGHHHHH
T ss_pred ccccccccccccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcccHHHHH
Confidence 899999888 9999999999999999 57999999975 99999999976544 555555555543 44443
No 25
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.41 E-value=4.2e-11 Score=119.16 Aligned_cols=294 Identities=13% Similarity=0.064 Sum_probs=183.7
Q ss_pred ccccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 005555 363 VGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (691)
Q Consensus 363 ~~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~~gg~l~~~~~~~~~ 441 (691)
..+.||++|.-.+.++. +-.+.+.|.+||..+ ....++.|+...+....|++++.-.|.+.++..||.++...+
T Consensus 26 ~kl~ngL~Vas~e~~~~-is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~t---- 100 (429)
T KOG2583|consen 26 TKLVNGLTVASREAPTA-ISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTAT---- 100 (429)
T ss_pred hccccceEEEeccCCCc-ceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeee----
Confidence 35789999998886655 899999999999865 455677777777777899999999999999999999999988
Q ss_pred CCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhhH
Q 005555 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWI 521 (691)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 521 (691)
+|.+.+.++|+.++++-.+.+|.+++.+|.|.+-|-...+...+..++. ...+..++.+.+.+.-+..
T Consensus 101 ------Re~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~---~~t~~~~a~e~lH~aAfRn--- 168 (429)
T KOG2583|consen 101 ------RELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLA---YQTPYTIAIEQLHAAAFRN--- 168 (429)
T ss_pred ------cceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhh---hcChHHHHHHHHHHHHHhc---
Confidence 9999999999999999999999999999999853433332233333332 2345555555443332211
Q ss_pred HHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccccc
Q 005555 522 SEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW 601 (691)
Q Consensus 522 ~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 601 (691)
|++.--+.... ..-....++|..|-+++|...|++++-+|-. + +.++...++++ .++.+-.. .+.
T Consensus 169 -----gLgnslY~p~~-----~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd-~-~~L~~~~~~~~-~~~~~~~~--k~a 233 (429)
T KOG2583|consen 169 -----GLGNSLYSPGY-----QVGSVSSSELKDFAAKHFVKGNAVLVGVNVD-H-DDLKQFADEYA-PIRDGLPL--KPA 233 (429)
T ss_pred -----ccCCcccCCcc-----cccCccHHHHHHHHHHHhhccceEEEecCCC-h-HHHHHHHHHhc-cccCCCCC--CCC
Confidence 22110000000 0001123889999999999999987666544 3 56888888872 12211110 111
Q ss_pred cccCCCCceEEEeCcCeeEEEEeccc-CCCCCCcchHHHHHHHhhcC-cc------chhhhhccCCCCCcc--ceecCCC
Q 005555 602 KAHLPSANEAIVIPTQVNYVGKAANI-FETGYKLNGSAYVISKHISN-VW------LWDRVRVSGGAYGGF--CDFDSHS 671 (691)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~d~~al~vl~~iLg~-sr------L~~~IRekGlaYgv~--~~~~~~~ 671 (691)
+....+...-......-.+++.+..+ ..-+.+...+..|+.++||+ +. +.-++-..-+-|++. +...++.
T Consensus 234 ~a~~~gGe~Rk~~~g~~~~v~vagegAAa~~~k~~~a~av~~~~Lg~~~~~k~~t~~~~~aa~~a~~~~~s~sA~~a~ys 313 (429)
T KOG2583|consen 234 PAKYSGGEARKDARGNRVHVAVAGEGAAAGNLKVLAAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAFNAPYS 313 (429)
T ss_pred CccccCCccccccCCceeEEEEecCcccccchHHHHHHHHHHHHHhcccccccccchHHHHHhhccccCceeeeeccccc
Confidence 11111111101112334466554444 44557899999999999993 22 223333222225543 3444555
Q ss_pred ceEEEEEe---eCCChhhhh
Q 005555 672 GVILIFIL---SGPQLVKNT 688 (691)
Q Consensus 672 g~~~f~~y---~~p~~~~t~ 688 (691)
+.+.|.+| .+++..++.
T Consensus 314 DsGL~gv~~~~~~~~a~~~v 333 (429)
T KOG2583|consen 314 DSGLFGVYVSAQGSQAGKVV 333 (429)
T ss_pred CCceEEEEEEecCccHHHHH
Confidence 55556555 444554544
No 26
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.25 E-value=1.7e-10 Score=128.43 Aligned_cols=281 Identities=10% Similarity=0.015 Sum_probs=189.5
Q ss_pred ccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHH-HHhh-cccceEEeeeeccCC
Q 005555 365 DINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQ-LIGR-KTGGISVYPFTSSIH 442 (691)
Q Consensus 365 ~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~-~ie~-~gg~l~~~~~~~~~~ 442 (691)
.+.|+.++....++ +-..+++.|.+ .+.+..+++|..+|+...|++++...+.=- .+.+ +.-.+||.|+
T Consensus 27 ~~TGa~l~hi~~~d-~~~vFsi~F~T---~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~----- 97 (978)
T COG1026 27 EKTGAELAHIKNED-PNNVFSIAFKT---EPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTF----- 97 (978)
T ss_pred ccCCceEEEecCCC-cCceEEEEeec---CCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccC-----
Confidence 34799998775443 23456777777 334445666666666779999998876533 3333 2223888887
Q ss_pred CCCCCeeEEEEEEEecc-ccHHHHHHHHHHHHhcCCCCcHHHHH------------------HHHHHHHHHHhhhhccCc
Q 005555 443 GKEDPCCCMVVRGKAMA-GQAEDLFNLFNCVLQEVQLTDQQRFK------------------QFVSQSKARMENRLRGSG 503 (691)
Q Consensus 443 ~~~~~~~~~~~~~~~l~-~~~~~~l~ll~dil~~p~f~~~e~~~------------------~~~~~~~~~~~~~~~~~~ 503 (691)
.|.|+|-+++.. +++-..+.+..|.+++|-..+ +.+. .|-.+++..+ .++
T Consensus 98 -----~D~T~YP~sS~~~~Df~NLl~VYlDavf~PlL~~-e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~-----ss~ 166 (978)
T COG1026 98 -----PDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTK-ESFLQEGWRIEFKDESNLKYKGVVYNEMKGAY-----SSG 166 (978)
T ss_pred -----CCcceeeccccCcchHHHHHHHHHHhhhCcccch-HHHhhhhhccccCCCccceeeeEEeehhcccc-----cCc
Confidence 688999888776 689999999999999998873 3222 1223444444 477
Q ss_pred HHHHHHHHHhccChhhhHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHH
Q 005555 504 HGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFV 583 (691)
Q Consensus 504 ~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~ 583 (691)
+.+..+.+...++++..|+.--+|.+. .| ++.+-+++++||+++|.|+|+.+.+.||++ .++..+.+
T Consensus 167 ~~~~~~~~~~slfp~~ty~~~SGG~P~--~I----------~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~-~~~~L~~i 233 (978)
T COG1026 167 ESVLSRAMQQSLFPGTTYGVNSGGDPK--NI----------PDLTYEEFRAFHKKHYHPSNCKIFVYGNIP-TERLLDFI 233 (978)
T ss_pred hhHHHHHHHHhhCCCccccccCCCCcc--cc----------cccCHHHHHHHHHHhCCccceEEEEECCCC-HHHHHHHH
Confidence 889999999999998888777777751 12 233459999999999999999999999996 56777777
Q ss_pred HHH-HhcCCCCCCccccccccc-CCCCceE--EEe-----CcCeeEEEEecccCCCCC-CcchHHHHHHHhhc---Cccc
Q 005555 584 GKF-LDMLPTNSPVERVKWKAH-LPSANEA--IVI-----PTQVNYVGKAANIFETGY-KLNGSAYVISKHIS---NVWL 650 (691)
Q Consensus 584 ~~~-~~~l~~~~~~~~~~~~~~-~~~~~~~--~~~-----~~~~~~v~~~~~~~~~~~-~d~~al~vl~~iLg---~srL 650 (691)
+.. +...++.....+.++... ..+.... ..+ +..+..+.++|.+++..+ .+..++.||..||- .|+|
T Consensus 234 ee~~l~~~~k~~~~~~i~~~~~~~~~~~~~~~ypi~~~~~de~q~~~~lsWl~~~~~d~~~~lal~vL~~iLl~~~asPl 313 (978)
T COG1026 234 EEKVLRPFGKRELDVPIPDQKAFKKPRRKVLEYPISFDEEDEDQGLLSLSWLGGSASDAEDSLALEVLEEILLDSAASPL 313 (978)
T ss_pred HHhhhccccccccCCCCCcccccCcccccceeeccCCCCCCCceeEEEEEEecCCcccHHHHHHHHHHHHHHccCcccHH
Confidence 766 555544332212221111 1111111 122 234678889999877665 56899999999996 7899
Q ss_pred hhhhhccCCC-CCccceecCCCceEEEEE
Q 005555 651 WDRVRVSGGA-YGGFCDFDSHSGVILIFI 678 (691)
Q Consensus 651 ~~~IRekGla-Ygv~~~~~~~~g~~~f~~ 678 (691)
.+.|=|-|+. +.+..++..+.-...|++
T Consensus 314 ~~~liesglg~~~~~g~~~~~~~~~~f~v 342 (978)
T COG1026 314 TQALIESGLGFADVSGSYDSDLKETIFSV 342 (978)
T ss_pred HHHHHHcCCCcccccceeccccceeEEEE
Confidence 9999998766 554444444433333433
No 27
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=98.99 E-value=1.8e-09 Score=102.58 Aligned_cols=156 Identities=21% Similarity=0.339 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccc---cc-cCCCCch----hhHHHH-------H
Q 005555 167 KLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSL---RE-NNTGSFP----RGLSLM-------L 231 (691)
Q Consensus 167 ~lt~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~~~~~~~~e~~~---~~-~~~~~~~----~~~~~~-------~ 231 (691)
++|.++|++||++||+|+||+++++||+++++++++|+ ..++.++... .. ......+ .+..+. .
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIE-KYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQ 79 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHH-HHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSS
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHH-hhhhhhccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999999999999999999999997 5455443221 00 0000000 000000 0
Q ss_pred hhh-cccccCCCCcCCcCCchHHHHHHHHHhccCChhhHHHHHHHh-cc----------cCCCeeEEEEecCcCchhhHH
Q 005555 232 RSM-GKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKY-IL----------NNPHCVTVEMQPDPEKASRDE 299 (691)
Q Consensus 232 ~~~-~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~s~~~~~~l~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~ 299 (691)
..+ ..|... +.........+..|...+....++++|..++++. +. .+...+.+.+.+.++..+...
T Consensus 80 ~~v~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (184)
T PF05193_consen 80 SIVSIAFPGP--PIKDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPENLDEAI 157 (184)
T ss_dssp EEEEEEEEEE--ETGTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGGGHHHHH
T ss_pred cccccccccc--cccccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcccHHHHH
Confidence 000 001000 0002223556777888887666667999888442 11 112234555555555566677
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHH
Q 005555 300 AAEKEILAKV-KSSMTKEDLAELARAT 325 (691)
Q Consensus 300 ~~~~~~l~~~-~~~~s~eel~~~k~~~ 325 (691)
+.+.+.++.+ +.|++++||+++|+++
T Consensus 158 ~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 158 EAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 7888888887 6679999999999853
No 28
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=5.8e-08 Score=102.72 Aligned_cols=270 Identities=11% Similarity=0.021 Sum_probs=177.8
Q ss_pred CCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhh-cccceEEeeeeccCCCCC
Q 005555 367 NGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGR-KTGGISVYPFTSSIHGKE 445 (691)
Q Consensus 367 nG~~v~~~~~~~~~~v~~~~~f~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~ie~-~gg~l~~~~~~~~~~~~~ 445 (691)
-|++|...+.||. .|+-.+.+.+-. ...-+++|..+||.+.|+|++++.-+-..+.+ .-|..||-|+
T Consensus 28 Tkl~va~~~~pts-~vhG~f~v~TEa---~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTD-------- 95 (1022)
T KOG0961|consen 28 TKLRVAIGEVPTS-MVHGAFSVVTEA---DSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTD-------- 95 (1022)
T ss_pred cceEEEEeecCCc-ceeeeEEeeeee---cCCCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccc--------
Confidence 4788888888888 666555554432 22347888888888899999999877665554 5567888887
Q ss_pred CCeeEEEEEEEecc-ccHHHHHHHHHHHHhcCCCCcHHHHH-------------HHHHHHHHHHhhhhccCcHHHHHHHH
Q 005555 446 DPCCCMVVRGKAMA-GQAEDLFNLFNCVLQEVQLTDQQRFK-------------QFVSQSKARMENRLRGSGHGIAAARM 511 (691)
Q Consensus 446 ~~~~~~~~~~~~l~-~~~~~~l~ll~dil~~p~f~~~e~~~-------------~~~~~~~~~~~~~~~~~~~~~a~~~~ 511 (691)
-|++.|..++-- +.+-+.|....|-+..|.+.+ +.+- .++-.+.+..+ ..+.++..+..
T Consensus 96 --tD~T~YtLStag~dGFlklLPvy~dHiL~P~Ltd-eaf~TEVyHI~geg~d~GVVySEMq~~e----s~~~~im~~~~ 168 (1022)
T KOG0961|consen 96 --TDHTAYTLSTAGSDGFLKLLPVYIDHILTPMLTD-EAFATEVYHITGEGNDAGVVYSEMQDHE----SEMESIMDRKT 168 (1022)
T ss_pred --cCcceEEeecccccchHHHhHHHHHhhcCcccch-hhhhhheeeecCCCCccceeehhhhhhh----cccchhhhhhh
Confidence 477888877654 678999999999999999985 4332 23333444443 23445666655
Q ss_pred HhccC-hhhhHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcC
Q 005555 512 DAKLN-TAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDML 590 (691)
Q Consensus 512 ~~~~~-~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l 590 (691)
+...+ +...|..-.+|.. ..++. .+.+.+++||+++|.++||.|.|+|.+++ +++....+.+-..+
T Consensus 169 ~~~~yP~~sgY~~eTGG~~--knLR~----------lt~ekIR~yHK~~Y~~sN~cviVcG~v~~-d~lL~~m~~~~nei 235 (1022)
T KOG0961|consen 169 KEVIYPPFSGYAVETGGRL--KNLRE----------LTLEKIRDYHKKFYHLSNMCVIVCGMVDH-DQLLEIMNNVENEI 235 (1022)
T ss_pred heeecCCCCCceeccCCCh--hhHHH----------hhHHHHHHHHHHhccccceEEEEecCcCH-HHHHHHHHHHHhhh
Confidence 55554 4455555555553 23333 24599999999999999999999999974 78887777766555
Q ss_pred CCCCCcccc----ccccc------CCCCceEEEeC---cCeeEEEEecccCCCCCC-cchHHHHHHHhhcC---ccchhh
Q 005555 591 PTNSPVERV----KWKAH------LPSANEAIVIP---TQVNYVGKAANIFETGYK-LNGSAYVISKHISN---VWLWDR 653 (691)
Q Consensus 591 ~~~~~~~~~----~~~~~------~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~-d~~al~vl~~iLg~---srL~~~ 653 (691)
+......|. |+-.. .......+.-| ..+..+.++|.+++..|- ...|+.||..+|++ +.+-++
T Consensus 236 le~~s~vP~~~~rPf~~tn~~~~i~e~t~~tVefp~~Des~G~v~~aW~g~s~sD~~t~~a~~vL~dyls~savapf~~~ 315 (1022)
T KOG0961|consen 236 LEHMSTVPDHFPRPFSFTNALSDIKESTVHTVEFPTDDESRGAVEVAWFGHSPSDLETHSALHVLFDYLSNSAVAPFQKD 315 (1022)
T ss_pred hhccccCCCCCCCCcccccCcccCCccceeeeecCCcccccceEEEEEcCCCHHHhhhHHHHHHHHHHhccccccccccc
Confidence 543221111 11110 01111122222 345567788988876664 46899999999993 466667
Q ss_pred hhc-c-CCCCCccceec
Q 005555 654 VRV-S-GGAYGGFCDFD 668 (691)
Q Consensus 654 IRe-k-GlaYgv~~~~~ 668 (691)
.-| . -+|-++++..+
T Consensus 316 fVeieDP~assv~f~~~ 332 (1022)
T KOG0961|consen 316 FVEIEDPLASSVSFHIA 332 (1022)
T ss_pred eEEecCccccceeeeee
Confidence 666 3 57766666554
No 29
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=8.8e-07 Score=94.21 Aligned_cols=282 Identities=12% Similarity=0.049 Sum_probs=177.4
Q ss_pred cCCceEEEeec-CCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHH-HHHHHhh-cccceEEeeeeccCC
Q 005555 366 INGVKVLQHDL-FTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQ-LDQLIGR-KTGGISVYPFTSSIH 442 (691)
Q Consensus 366 ~nG~~v~~~~~-~~~~~v~~~~~f~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~e-l~~~ie~-~gg~l~~~~~~~~~~ 442 (691)
.-|..++.... .+|.+ +++.|.+ ++.+..+++|..+|-.-.|+.++.-++ +-+.+.+ +.-.+||+|.
T Consensus 60 ~Tgae~lhl~reD~N~v--FsI~FrT---pp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~----- 129 (998)
T KOG2019|consen 60 KTGAEVLHLDREDENNV--FSIVFRT---PPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTA----- 129 (998)
T ss_pred CCCceeEeeccCCCCce--eEEEeec---CCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccC-----
Confidence 45889987743 44434 3566766 445556787877777768999987653 3333333 3446888887
Q ss_pred CCCCCeeEEEEEEEecc-ccHHHHHHHHHHHHhcCCCCc----HH--H--------------HH-HHHHHHHHHHhhhhc
Q 005555 443 GKEDPCCCMVVRGKAMA-GQAEDLFNLFNCVLQEVQLTD----QQ--R--------------FK-QFVSQSKARMENRLR 500 (691)
Q Consensus 443 ~~~~~~~~~~~~~~~l~-~~~~~~l~ll~dil~~p~f~~----~e--~--------------~~-~~~~~~~~~~~~~~~ 500 (691)
.|+++|=+.+.+ .++....++.-|..+.|.... .| | ++ .+..+++-.+.
T Consensus 130 -----pD~T~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S---- 200 (998)
T KOG2019|consen 130 -----PDYTFYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYS---- 200 (998)
T ss_pred -----CCcceeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeeccccccc----
Confidence 688888766555 678888888888777776641 11 1 12 22334444442
Q ss_pred cCcHHHHHHHHHhccChhhhHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHH
Q 005555 501 GSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSE 580 (691)
Q Consensus 501 ~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~ 580 (691)
.+..+....+...+++++.|+-.-+|-+ ...++.+-++|++||+++|.|.|..+.--||+. ++...
T Consensus 201 -~~~~if~~~~Qq~L~p~~tYgv~SGGDP------------l~IpdLt~eelk~FHr~~YHPSNAri~tYGn~P-l~~~l 266 (998)
T KOG2019|consen 201 -DPDYIFGMLFQQALFPENTYGVNSGGDP------------LDIPDLTYEELKEFHRQHYHPSNARIFTYGNFP-LEDLL 266 (998)
T ss_pred -ChhHHHHHHHHHhhCccccccccCCCCc------------ccCccccHHHHHHHHHhccCCCcceeEeecCch-HHHHH
Confidence 3455666677777777766655455543 112333458999999999999999999999995 66666
Q ss_pred HHHHHHHhcCCCCCCcccccccccC-CCCceEE-------EeCcCeeEEEEecccCCC-CCCcchHHHHHHHhhc---Cc
Q 005555 581 RFVGKFLDMLPTNSPVERVKWKAHL-PSANEAI-------VIPTQVNYVGKAANIFET-GYKLNGSAYVISKHIS---NV 648 (691)
Q Consensus 581 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~~d~~al~vl~~iLg---~s 648 (691)
.+++.-|......+...+....... .+++.+. ..|..|.-+.+.+-..+. +--+..+|.||.++|- +|
T Consensus 267 ~~l~e~~~~~sk~~~s~kv~~qk~f~kp~rvve~~p~d~~~~p~Kq~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsS 346 (998)
T KOG2019|consen 267 KQLEEDFSPFSKRELSSKVTFQKLFDKPRRVVEKGPADPGDLPKKQTKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSS 346 (998)
T ss_pred HHHHHhhcccccccccCccccccccccCceeeeecCCCCCCCccceeEEEEEeecCCchhHHHHHHHHHHHHHhcCCCcc
Confidence 6666555544333222122111111 1111111 123345555555554443 3356789999999985 89
Q ss_pred cchhhhhccCC--CCCccceecCCCceEEEEEee
Q 005555 649 WLWDRVRVSGG--AYGGFCDFDSHSGVILIFILS 680 (691)
Q Consensus 649 rL~~~IRekGl--aYgv~~~~~~~~g~~~f~~y~ 680 (691)
.+++.|=|.|+ -.++.+.+....-...|++.-
T Consensus 347 p~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGL 380 (998)
T KOG2019|consen 347 PFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGL 380 (998)
T ss_pred HHHHHHHHcCCCcccccCCCCCcccccceeeeee
Confidence 99999999754 588999988766556666553
No 30
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=91.22 E-value=3.4 Score=43.68 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCC
Q 005555 549 SSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSP 595 (691)
Q Consensus 549 ~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~ 595 (691)
.+.|.+-.+++-.| |++ ..+-.++ +.+..++++.||.||+.+.
T Consensus 152 ~~mL~~RM~~I~Gp-niV-IFVk~l~--~~~l~lL~~TFGtLP~cP~ 194 (590)
T PF03410_consen 152 RNMLSNRMHRIIGP-NIV-IFVKELN--PNILSLLSNTFGTLPSCPL 194 (590)
T ss_pred HHHHHHHHHhhcCC-cEE-EEEeccC--HHHHHHHHHhcCCCCCCcc
Confidence 34555555556666 544 5556664 4688999999999998764
No 31
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=90.60 E-value=0.68 Score=48.59 Aligned_cols=162 Identities=18% Similarity=0.248 Sum_probs=87.3
Q ss_pred EEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhhhh
Q 005555 13 GIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVF 92 (691)
Q Consensus 13 ~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~~~~~ 92 (691)
+.|+-.+-.+--|+||+|||.+.. | + -.+++ .||+|++.+.+|=..+...+....++.-+..|+|
T Consensus 26 ~FGFe~DI~~iLGiAHLLEHILIs----F---D-~~~F~-------ANASTaRsYMSFWC~si~g~~~~DAvrtliSWFF 90 (590)
T PF03410_consen 26 NFGFENDIGEILGIAHLLEHILIS----F---D-SSKFL-------ANASTARSYMSFWCKSIRGRTYIDAVRTLISWFF 90 (590)
T ss_pred ccccccchHHHHhHHHHHHHHeee----c---c-hHHhh-------cccchhhhhhhhhhhhccCCChhHHHHHHHHHhh
Confidence 445556666788999999999863 2 2 12221 5889999998885333333456667777778877
Q ss_pred CCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhh--cCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCCH
Q 005555 93 FPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGV--YSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTF 170 (691)
Q Consensus 93 ~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~--~~~p~~~~~~~~~~~l~~~~~~~~~~~G~~~~i~~lt~ 170 (691)
.-.-..+. |.... ...-..|+++. ..+--....+.+ ..|.+|.-|- ||....+++++
T Consensus 91 ~~g~Lk~~--F~~~~--------------i~~hikELENEYYFRnEvfHCmDvL-tfL~gGDLYN---GGRi~ML~~l~- 149 (590)
T PF03410_consen 91 DNGKLKDN--FSRSK--------------IKNHIKELENEYYFRNEVFHCMDVL-TFLGGGDLYN---GGRIDMLNNLN- 149 (590)
T ss_pred cCCccccc--ccHhH--------------HHHHHHHHhhhhhhhhhHHHHHHHH-HHhcCCcccC---CchHHHHhhhH-
Confidence 64433444 54321 11122333321 112222333332 3355555552 44555555443
Q ss_pred HHHHHHHHhhcC--CCCeEEEEEeCCCHHHHHHHhhhcccccccc
Q 005555 171 EEFKEFHRKYYH--PSNARIWFYGDDDPNERLRILSEASMNTIEF 213 (691)
Q Consensus 171 e~l~~fy~~~y~--p~n~~l~v~G~~d~~~~~~~i~~~~~~~~e~ 213 (691)
++...-....+ .+.-+++++-.+++ .++.+++ ..|+.++.
T Consensus 150 -~i~~mL~~RM~~I~GpniVIFVk~l~~-~~l~lL~-~TFGtLP~ 191 (590)
T PF03410_consen 150 -DIRNMLSNRMHRIIGPNIVIFVKELNP-NILSLLS-NTFGTLPS 191 (590)
T ss_pred -HHHHHHHHHHHhhcCCcEEEEEeccCH-HHHHHHH-HhcCCCCC
Confidence 33333322221 13334555666884 5678886 77887653
No 32
>PHA03081 putative metalloprotease; Provisional
Probab=86.21 E-value=2 Score=45.27 Aligned_cols=162 Identities=16% Similarity=0.240 Sum_probs=92.3
Q ss_pred EEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhhhh
Q 005555 13 GIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVF 92 (691)
Q Consensus 13 ~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~~~~~ 92 (691)
+.|+-.+-.+--|+||+|||.+.. | + ..++ - .||+|++.+..|-..+...+....++.-+..|+|
T Consensus 26 ~fgfe~di~~~lg~ahllehili~----f---d-~~~f-----~--anast~r~ymsfwc~sirg~~y~DAvrtliSWFF 90 (595)
T PHA03081 26 NFGFENDIGEILGIAHLLEHILIS----F---D-SSKF-----V--ANASTARSYMSFWCKSIRGRSYIDAIRTLISWFF 90 (595)
T ss_pred ccccccchHHHHhHHHHHHHHeee----c---c-hHHh-----c--ccchhhhhhHhHhhHhhcCCchHHHHHHHHHHhc
Confidence 345556666778999999999863 2 2 1222 1 5888999888885333333446778888899999
Q ss_pred CCCCcccchhhhhcccccccCCCCCCccchhHHHHHHhhh--cCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCCH
Q 005555 93 FPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGV--YSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTF 170 (691)
Q Consensus 93 ~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~--~~~p~~~~~~~~~~~l~~~~~~~~~~~G~~~~i~~lt~ 170 (691)
.+.-..+. |.... ...-..|+++. ..+-....++.+ ..|.+|.-|- +|....++++.
T Consensus 91 ~~~~Lr~~--F~~~~--------------ik~~ikELENEYYFRnEvfHCmDvL-TfL~gGDLYN---GGRi~ML~~l~- 149 (595)
T PHA03081 91 DNGKLKDN--FSLSK--------------IRNHIKELENEYYFRNEVFHCMDVL-TFLGGGDLYN---GGRIDMLDNLN- 149 (595)
T ss_pred cCCccccc--cchhh--------------HHHHHHHHhhhhhhhhhhHHHHHHH-HHhcCCcccC---CchHHHHhhhH-
Confidence 88865666 66431 11222344321 122223333333 3455555542 45555555543
Q ss_pred HHHHHHHHhhcC--CCCeEEEEEeCCCHHHHHHHhhhcccccccc
Q 005555 171 EEFKEFHRKYYH--PSNARIWFYGDDDPNERLRILSEASMNTIEF 213 (691)
Q Consensus 171 e~l~~fy~~~y~--p~n~~l~v~G~~d~~~~~~~i~~~~~~~~e~ 213 (691)
+++..-....+ .+.-+++++-.++. .++.+++ +.|+.++.
T Consensus 150 -~i~~~L~~RM~~I~GpniVIFVk~ln~-~~l~lL~-~TFGtLP~ 191 (595)
T PHA03081 150 -DVRDMLSNRMHRISGPNIVIFVKELNP-NTLSLLN-NTFGTLPS 191 (595)
T ss_pred -HHHHHHHHHHHhhcCCcEEEEEeccCH-HHHHHHH-HhcCCCCC
Confidence 34444433332 23335556666884 4678886 77887653
No 33
>PHA03081 putative metalloprotease; Provisional
Probab=85.20 E-value=12 Score=39.76 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCC
Q 005555 549 SSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSP 595 (691)
Q Consensus 549 ~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~~~~~~~~l~~~~~ 595 (691)
.+.|.+-.+++-.| |+ |..+-..+ +.+..++++.||.||+.+.
T Consensus 152 ~~~L~~RM~~I~Gp-ni-VIFVk~ln--~~~l~lL~~TFGtLP~~P~ 194 (595)
T PHA03081 152 RDMLSNRMHRISGP-NI-VIFVKELN--PNTLSLLNNTFGTLPSCPE 194 (595)
T ss_pred HHHHHHHHHhhcCC-cE-EEEEeccC--HHHHHHHHHhcCCCCCCcc
Confidence 34455555556665 54 45556664 4688999999999998764
No 34
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=48.13 E-value=17 Score=36.16 Aligned_cols=71 Identities=7% Similarity=-0.001 Sum_probs=41.7
Q ss_pred HHHHHhhcc-CCCCCCCCcHHHHHHhhccCcccceee----cC----Cce-EEEe-ecCCHhhHHHHHHHHHhhhhCCCC
Q 005555 28 HILEHSVLC-GSRKYPLKEPFVELLKGSLNTFLNAFT----YP----DRT-CYPV-ASTNTKDFYNLVDVYFDAVFFPKC 96 (691)
Q Consensus 28 h~lehl~~~-Gs~~~~~~~~~~~~~~~~~g~~~na~t----~~----d~t-~y~~-~~~~~~~~~~~l~~~~~~~~~P~~ 96 (691)
-++..++.+ ||++++..++ ........|+ +++.+ +. ... .+.+ +.+..++++.+++++.+++++|.|
T Consensus 112 ~Ll~~ll~~lgT~~~sy~el-~~~i~~~tGG-is~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f 189 (248)
T PF08367_consen 112 PLLTDLLGELGTKNYSYEEL-SNEIDLYTGG-ISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDF 189 (248)
T ss_dssp HHHHHHCCCS-BSSS-HHHH-HHHHHHHSSE-EEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-T
T ss_pred HHHHHHHHhCCCCCCCHHHH-HHHHHHhCCC-eEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCC
Confidence 344555554 9999999884 4443333332 44333 22 111 1222 346789999999999999999999
Q ss_pred cccc
Q 005555 97 VEDF 100 (691)
Q Consensus 97 ~~~~ 100 (691)
++.+
T Consensus 190 ~d~~ 193 (248)
T PF08367_consen 190 DDKE 193 (248)
T ss_dssp T-HH
T ss_pred CcHH
Confidence 7665
No 35
>PF05838 Glyco_hydro_108: Glycosyl hydrolase 108; InterPro: IPR008565 This family consists of several hypothetical bacterial sequences as well as one viral sequence Q9MC03 from SWISSPROT, the function of this family is unknown.; PDB: 2NR7_A 2IKB_B 2IS5_A.
Probab=33.87 E-value=33 Score=27.50 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=19.0
Q ss_pred cCccCCCCHHHHHHHHHhhc-CCCCe
Q 005555 162 PKVIPKLTFEEFKEFHRKYY-HPSNA 186 (691)
Q Consensus 162 ~~~i~~lt~e~l~~fy~~~y-~p~n~ 186 (691)
..+|++||.++..++|++.| .+-++
T Consensus 39 ~~d~~~Lt~~~A~~iY~~~yW~~~~~ 64 (83)
T PF05838_consen 39 AGDMRDLTRDQAKAIYRRDYWDPLGC 64 (83)
T ss_dssp -S-CCCS-HHHHHHCHHHHTTCCCTG
T ss_pred cCchhhcCHHHHHHHHHHHhcCccch
Confidence 78899999999999998777 77665
No 36
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.47 E-value=8.7e+02 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=15.0
Q ss_pred CCeEEEEEeCCCHHHHHHHhh
Q 005555 184 SNARIWFYGDDDPNERLRILS 204 (691)
Q Consensus 184 ~n~~l~v~G~~d~~~~~~~i~ 204 (691)
+++.++++||++ ...+.+++
T Consensus 317 ~~ASlVFvGNvn-qs~E~lvk 336 (683)
T COG4930 317 SDASLVFVGNVN-QSSEGLVK 336 (683)
T ss_pred ccceEEEEeccc-ccccceee
Confidence 689999999999 44455553
Done!