Query 005555
Match_columns 691
No_of_seqs 249 out of 2765
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 18:53:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005555.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2060-2064//hhsearch_pdb/005555hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s5m_A Falcilysin; M16 metallo 1.0 1 1 794.5 60.6 687 1-691 99-1078(1193)
2 2fge_A Atprep2;, zinc metallop 1.0 1 1 681.0 68.1 683 2-691 51-884 (995)
3 3cww_A Insulysin, insulin-degr 1.0 1 1 488.9 39.3 624 11-691 62-837 (990)
4 1q2l_A Protease III; hydrolase 1.0 1 1 466.0 45.8 622 10-688 47-806 (939)
5 3hdi_A Processing protease; CA 1.0 1 1 300.0 28.8 299 364-689 6-312 (421)
6 3eoq_A Putative zinc protease; 1.0 1 1 298.1 26.9 280 364-670 6-290 (406)
7 1pp9_A Ubiquinol-cytochrome C 1.0 1 1 291.6 27.5 301 364-690 18-337 (446)
8 1hr6_B Beta-MPP, mitochondrial 1.0 1 1 287.5 28.8 302 364-690 11-336 (443)
9 3gwb_A Peptidase M16 inactive 1.0 1 1 286.1 24.3 303 362-689 16-328 (434)
10 3eoq_A Putative zinc protease; 1.0 1 1 281.0 19.6 324 10-360 28-392 (406)
No 1
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=1.00 E-value=1 Score=794.51 Aligned_cols=687 Identities=27% Similarity=0.452 Sum_probs=581.1
Q ss_pred CEEEECCC---CCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCEEEEEECCCH
Q ss_conf 90221499---918999961899999996699988610388999987089999830028652222249936998212797
Q 005555 1 MSVSNDDE---NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNT 77 (691)
Q Consensus 1 ~~~~~~d~---~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~~~~~~~~~ 77 (691)
+|+.+.|. +++|.+|+++|+.+++|+|||+|||+|+||++||..+++.++..+++|+++||+|+.|+|+|++.+.++
T Consensus 99 l~i~~~~~~~~~~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~ 178 (1193)
T 3s5m_A 99 ISLGTNDPLDVEQAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNN 178 (1193)
T ss_dssp EEEEECCTTCCCEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSH
T ss_pred EEEECCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEECCH
T ss_conf 99998998707899999978999997119999999983799898856699999975448248768768759999994578
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCC--------------CCCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 64999999997412188876551013120330124899--------------9786414489988732029948999999
Q 005555 78 KDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNP--------------SEDITYKGVVFNEMKGVYSQPDNILGRA 143 (691)
Q Consensus 78 ~~~~~~l~~l~~~~~~p~~~~~~~~f~~e~~~~~~~~~--------------~~~~~~k~~v~~e~~~~~~~p~~~~~~~ 143 (691)
++++.+|+++.|++++|.+++++.+|.+|+||+|++.. +.++..|++|++||++..++|..++.+.
T Consensus 179 ~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~ 258 (1193)
T 3s5m_A 179 KDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHE 258 (1193)
T ss_dssp HHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 88999999999998587876321102245666543111001101222222221004589999999997558999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCC-----------
Q ss_conf 999827999888788888686688899999999996157997099999089988999996440264432-----------
Q 005555 144 AQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIE----------- 212 (691)
Q Consensus 144 ~~~~~~~~~~~~~~~~G~~~~i~~it~e~l~~fy~~~y~p~n~~l~v~Gd~d~~~~~~~i~~~~~~~~e----------- 212 (691)
+.+.+|++|||+++++|++++|+++|+++|++||++||+|+|++|+++||+|++++++++++. |+.++
T Consensus 259 l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~-f~~~~~~~~~~~~~~~ 337 (1193)
T 3s5m_A 259 EMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQY-LGQLDYSKYRDDAVES 337 (1193)
T ss_dssp HHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHH-HTTCCGGGCCCCCCCC
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH-HCCCCCCCCCCCCCCC
T ss_conf 999857999998899999999851899999999998609566699999268899999999998-6058877777666666
Q ss_pred ----CCC------C------C----------CCCC-------C-----------------------------CHH-----
Q ss_conf ----332------2------3----------5878-------8-----------------------------414-----
Q 005555 213 ----FSL------R------E----------NNTG-------S-----------------------------FPR----- 225 (691)
Q Consensus 213 ----~~~------~------~----------~~~~-------~-----------------------------~~~----- 225 (691)
+.. . + ...+ . .+.
T Consensus 338 ~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~ 417 (1193)
T 3s5m_A 338 VEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLL 417 (1193)
T ss_dssp CCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCCSHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 67778778886999946899986513899999826754444453223443100011111233211122456862799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 005555 226 -------------------------------------------------------------------------------- 225 (691)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (691)
T Consensus 418 vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~g 497 (1193)
T 3s5m_A 418 IINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEG 497 (1193)
T ss_dssp HHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999779998779999996698035466545655678689999965783431453102489999999999999998729
Q ss_pred --------------------------HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf --------------------------699998620254348997577677248999999985119910499999986005
Q 005555 226 --------------------------GLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN 279 (691)
Q Consensus 226 --------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~s~~~~~~l~~~~~~~ 279 (691)
|+.++......|.+.++|...|+....+..|++.+.. ++.+++.++++|+++
T Consensus 498 i~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~--~~~~~~~li~~yll~ 575 (1193)
T 3s5m_A 498 FNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKN--EPMYLEKFVEKHFIN 575 (1193)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHH--STTHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHCC
T ss_conf 899999999999999877513799709999999878878079989987789999999998610--849999999998334
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99805999825957024699999999999980199999999999999999770999991110369998866899999989
Q 005555 280 NPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRV 359 (691)
Q Consensus 280 ~~~~~~i~~~p~~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~~~~~~~~~~l~~~~~~~~~di~~~~~~~ 359 (691)
+.+++++++.|+++..+...+.+.+.+++++..+|++|++++.++.+.+.++|.+.++++.+++||.++++||++....+
T Consensus 576 n~~~~~~~~~P~~~~~~~~~~~e~~~L~~~~~~ls~~~~~~i~~~~~~L~~~q~~~~~~e~l~~lP~l~~~Di~~~~~~~ 655 (1193)
T 3s5m_A 576 NAHRSVILLEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISDLNKKTLEV 655 (1193)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHTTSCCCCGGGSCSSCCCC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHCCCCCCCC
T ss_conf 99638999972887778999999999999986389999999999999999987377975469747847098768876667
Q ss_pred CCCC--------------------------------------------------------------CCCCCCEEEEEECC
Q ss_conf 9721--------------------------------------------------------------22389059996417
Q 005555 360 PTEV--------------------------------------------------------------GDINGVKVLQHDLF 377 (691)
Q Consensus 360 ~~~~--------------------------------------------------------------~~~nG~~v~~~~~~ 377 (691)
|..+ ...||+++++++.+
T Consensus 656 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~ 735 (1193)
T 3s5m_A 656 PVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPILVYEMP 735 (1193)
T ss_dssp CCEEEEECTTTCSCHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---------------------CCTTTTCEEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 63011222221122100011111111112221100000000122222223222223322222211134498379999879
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC----CCCC--EEEE
Q ss_conf 995799999951899981224684889987631399988999999998500341688630015799----9997--0279
Q 005555 378 TNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHG----KEDP--CCCM 451 (691)
Q Consensus 378 ~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~~----~~~~--~~~~ 451 (691)
|||+||+++.|+++.+++++.+++++|+.+|++.||+++++.||+++++.++|+++++++.++..+ .+.+ .+++
T Consensus 736 TNGIvY~~l~fdl~~l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~ 815 (1193)
T 3s5m_A 736 TTGIVYLQFVFSLDHLTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALF 815 (1193)
T ss_dssp CTTEEEEEEEEECTTCCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEE
T ss_pred CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEE
T ss_conf 99869999998799999788756999999998479999999999999998588558876650365544556655656469
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCHHHHH
Q ss_conf 99998654458899999999870489992789999999999987644305827999999984039135699982400599
Q 005555 452 VVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYL 531 (691)
Q Consensus 452 ~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~ 531 (691)
.++++||.++++++++|+.++|.+|+|++.+|++.++.+.+++++++..++||.+|..++.+.+++.+++.+.++|++++
T Consensus 816 ~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~ 895 (1193)
T 3s5m_A 816 NLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENY 895 (1193)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHH
T ss_pred EEEEEEHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHH
T ss_conf 99999744269999999999985799996899999999999988731424668999999998647502234420785799
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCC----C-----------CC
Q ss_conf 99999999630299999999999999971899959999709520123899999988209999----9-----------85
Q 005555 532 EFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTN----S-----------PV 596 (691)
Q Consensus 532 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~----~-----------~~ 596 (691)
.+++.+.+.++++++.+.++|+++++++|+++|++++++|+.+..+.+.+.++++++.|+.. . .+
T Consensus 896 ~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 975 (1193)
T 3s5m_A 896 LKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDP 975 (1193)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99999998667559999999999999981878839999947656999999999999751210255664322222334454
Q ss_pred CCCCC--------C-CCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEE
Q ss_conf 32222--------3-56899865898076703999712467789885118999999622720323331159977832100
Q 005555 597 ERVKW--------K-AHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDF 667 (691)
Q Consensus 597 ~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~Vl~~iLg~srL~~~IRekG~aYg~~~~~ 667 (691)
....+ . ......++.+..|.+|+|+++|++..+.+++|++++.|+++|||++|||++|||||||||+++++
T Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~~~~~d~~al~Vl~~iLg~~~L~~eIREkgGAYg~~s~~ 1055 (1193)
T 3s5m_A 976 TVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFKPGEYLDPSFTVIVAALKNSYLWDTVRGLNGAYGVFADI 1055 (1193)
T ss_dssp CCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSCTTCBCCTHHHHHHHHHHHTHHHHHHTTTTCCSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEEC
T ss_conf 43322222233222355555550674278646999972477779876099999999978247799997618726887761
Q ss_pred CCCCCEEEEEEEECCCHHHHHHHC
Q ss_conf 478733999983189833554109
Q 005555 668 DSHSGVILIFILSGPQLVKNTRHI 691 (691)
Q Consensus 668 ~~~~g~~~~~~y~dp~~~~t~~~~ 691 (691)
+ ..|.|.|++||||++.+|+++|
T Consensus 1056 ~-~~G~f~~~syrdp~~~~tl~~~ 1078 (1193)
T 3s5m_A 1056 E-YDGSVVFLSARDPNLEKTLATF 1078 (1193)
T ss_dssp C-TTSEEEEEEESBSCSHHHHHHH
T ss_pred C-CCCCEEEEEEECCCHHHHHHHH
T ss_conf 6-7886799998079879999999
No 2
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=1.00 E-value=1 Score=681.01 Aligned_cols=683 Identities=72% Similarity=1.156 Sum_probs=524.8
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCEEEEEECCCHHHHH
Q ss_conf 02214999189999618999999966999886103889999870899998300286522222499369982127976499
Q 005555 2 SVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFY 81 (691)
Q Consensus 2 ~~~~~d~~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~~~~~~~~~~~~~ 81 (691)
++.+.+.+++|.+|+++|+.+++|+|||||||+|+||++||..+++.+++.+.+|+++||+|+.|+|+|++.+.+.++++
T Consensus 51 ~~~~~~~~~~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~ 130 (995)
T 2fge_A 51 SVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFY 130 (995)
T ss_dssp EEECSCSSEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHH
T ss_pred EEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCEEEEEECCCHHHHH
T ss_conf 99769986179999678986998768999999717887899846799999755188742067798359998448889999
Q ss_pred HHHHHHHHHHHCCCC--CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999999741218887--655101312033012489997864144899887320299489999999998279998887888
Q 005555 82 NLVDVYFDAVFFPKC--VEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSG 159 (691)
Q Consensus 82 ~~l~~l~~~~~~p~~--~~~~~~f~~e~~~~~~~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (691)
.+|+++.|++++|.| +++. |.+|+||+|+++.+.+.++|++|++|+++..++|.+++.+.+.+.+|++|||+++++
T Consensus 131 ~~l~~~~d~~~~p~~~~~~~~--~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~~~~ 208 (995)
T 2fge_A 131 NLVDVYLDAVFFPKCVDDAHT--FQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSG 208 (995)
T ss_dssp HHHHHHHHHHHSBGGGTSSHH--HHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTT
T ss_pred HHHHHHHHHHHCCCCCCCHHH--HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999999999758787799899--987666640456554321223199998750488899999999997189998877799
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCC--CCC--CCC-CCCCC--HH--HHHH-
Q ss_conf 88686688899999999996157997099999089988999996440264432--332--235-87884--14--6999-
Q 005555 160 GDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIE--FSL--REN-NTGSF--PR--GLSL- 229 (691)
Q Consensus 160 G~~~~i~~it~e~l~~fy~~~y~p~n~~l~v~Gd~d~~~~~~~i~~~~~~~~e--~~~--~~~-~~~~~--~~--~~~~- 229 (691)
|++++|+++|+++|++||++||+|+||+|+++||+|++++++++++ .|+.++ ... ... ....+ |. ...+
T Consensus 209 G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (995)
T 2fge_A 209 GDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSE-YLDMFEASPSPNSSKIKFQKLFSEPVRLVEKYP 287 (995)
T ss_dssp CCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHH-HHTTCCCCSHHHHSCCCCCCCCSSCEEEEEEEE
T ss_pred CCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 9967632158999999999818842169999869999999999999-985177545677766577778888705888605
Q ss_pred --------HHH-HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-------------------------
Q ss_conf --------986-2025434899757767724899999998511991049999998-------------------------
Q 005555 230 --------MLR-SMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEK------------------------- 275 (691)
Q Consensus 230 --------~~~-~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~s~~~~~~l~~~------------------------- 275 (691)
... ....|....... ......++.+|..+|.+..++++++.++++
T Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~gl~~~~~~~~~~~~~~~~~f~i~~~ 366 (995)
T 2fge_A 288 AGRDGDLKKKHMLCVNWLLSEKPL-DLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVSSGLSDELLQPQFGIGLK 366 (995)
T ss_dssp CCSSSCGGGCEEEEEEEECCSSCC-CHHHHHHHHHHHHHHHSSTTSHHHHHHHHTTSCSEECSCEEECSSSSCEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEECCCCCC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEEE
T ss_conf 677887667608999997688767-9889899999999976799878999998638875426515356666707999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 005555 276 -------------------------------------------------------------------------------- 275 (691)
Q Consensus 276 -------------------------------------------------------------------------------- 275 (691)
T Consensus 367 ~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (995)
T 2fge_A 367 GVSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPL 446 (995)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHH
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 48887899999999999999987398999999999999999774157889617999999999876699967876459999
Q ss_pred ----------------------HCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf ----------------------6005998059998259570246999999999999801999999999999999997709
Q 005555 276 ----------------------YILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQE 333 (691)
Q Consensus 276 ----------------------~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~~~ 333 (691)
++.++.+++.+.+.|+....+...+.+...++..+..+++++++++.++...+..++.
T Consensus 447 ~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 526 (995)
T 2fge_A 447 KALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQE 526 (995)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99998750786079999999998157994589999838028999999999999999873899999999999999999855
Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99991110369998866899999989972122389059996417995799999951899981224684889987631399
Q 005555 334 TPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGT 413 (691)
Q Consensus 334 ~~~~~~~l~~~~~~~~~di~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt 413 (691)
...+++.++.+|.+.+.||++....++....+.||++|++++.+++|+++++++|++|+++++..+++++++.+|...||
T Consensus 527 ~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~~Gt 606 (995)
T 2fge_A 527 TPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPLVPLFCQSLLEMGT 606 (995)
T ss_dssp SCCCHHHHTTSCCCCGGGSCSSCCCCCCEEEESSSSEEEEEECCCSSEEEEEEEEECTTSCTTTGGGHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHCCCCCHHHCCCCCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 89986788744779976667667878843564089249998669898699999961788997883437999999984899
Q ss_pred CCCCHHHHHHHHHHCCCCEEE-EEEECCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 988999999998500341688-6300157999997027999998654458899999999870489992789999999999
Q 005555 414 KDLSFVQLDQLIGRKTGGISV-YPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSK 492 (691)
Q Consensus 414 ~~~~~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~ 492 (691)
+++++.+|++.++...|++++ ++..+ ..+.+.+++.+.+++++++++++.+++|+.+++++|.|++.++++.++.+.+
T Consensus 607 ~~~s~~el~~~l~~~~ggl~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~ 685 (995)
T 2fge_A 607 KDLTFVQLNQLIGRKTGGISVYPLTSS-VRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSR 685 (995)
T ss_dssp SSSCHHHHHHHHHHHSSEEEEEEEEEE-ETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 888899999999973176484114546-6765455626999999836419999999999997388891899999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 98764430582799999998403913569998240059999999999630299999999999999971899959999709
Q 005555 493 ARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTAD 572 (691)
Q Consensus 493 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd 572 (691)
+.+++...++++.++..++.+.+++.+++.+..+|++++.++..+.+.+++.++.+.++|++||+++|++++++++|+||
T Consensus 686 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i~~~L~~~~~~~~~~~~~~~~v~Gd 765 (995)
T 2fge_A 686 ARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTAD 765 (995)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCSTTCEEEEEEC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 87887544269999999998737946899999735999999999998654189999999999999972868848999948
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 520123899999988209-9999853222235689986589807670399971246778988511899999962272032
Q 005555 573 GKNLKNSERFVGKFLDML-PTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLW 651 (691)
Q Consensus 573 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~Vl~~iLg~srL~ 651 (691)
++..+++++.++++++.| |..... ......+.....+.+..|.++++++.+++.+++++++++++.|++.|||+++||
T Consensus 766 ~~~~~~~~~~~~~~~~~l~p~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~al~vl~~iLg~~~L~ 844 (995)
T 2fge_A 766 GKSLTNVEKSVAKFLDLLPENPSGG-LVTWDGRLPLRNEAIVIPTQVNYVGKAGNIYSTGYELDGSAYVISKHISNTWLW 844 (995)
T ss_dssp HHHHHHHHHHHHHHHHTSCSSCSSC-SCCCCCCCCCCCEEEECSCSSBEEEEEEEGGGGTCCCCTHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCH
T ss_conf 8999889999999998527567777-776555677654489955741899974477788986649999999997777027
Q ss_pred HHHHCCCCCCCCCCEECCCCCEEE-EEEEECCCHHHHHHHC
Q ss_conf 333115997783210047873399-9983189833554109
Q 005555 652 DRVRVSGGAYGGFCDFDSHSGVIL-IFILSGPQLVKNTRHI 691 (691)
Q Consensus 652 ~~IRekG~aYg~~~~~~~~~g~~~-~~~y~dp~~~~t~~~~ 691 (691)
.+|||+|||||+++++.. .|.+. |++||||++.+|+++|
T Consensus 845 ~~iRe~g~aYg~~s~~~~-~G~~~~~~s~~dp~~~~~~~~~ 884 (995)
T 2fge_A 845 DRVRVSGGAYGGFCDFDS-HSGVFSYLSYRDPNLLKTLDIY 884 (995)
T ss_dssp HHTTTTTCCSEEEEEEET-TTTEEEEEEESBSCSHHHHHHH
T ss_pred HHHHHCCCCCCCCEEECC-CCCEEEEEEECCCCHHHHHHHH
T ss_conf 886314877221317179-9568999997289989999999
No 3
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=1.00 E-value=1 Score=488.88 Aligned_cols=624 Identities=13% Similarity=0.075 Sum_probs=439.8
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 89999618999999966999886103889999870899998300286522222499369982127976499999999741
Q 005555 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (691)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~~~~~~~~~~~~~~~l~~l~~~ 90 (691)
+|++|+++||.+..|+|||||||+|+||++||..+.+.+++.. .|+++||+|+.|+|+|++. +..++++.+|+++.++
T Consensus 62 ~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~-~Gg~~NA~T~~d~T~y~~~-~~~~~l~~~l~~~~d~ 139 (990)
T 3cww_A 62 DVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSE-HAGSSNAFTSGEHTNYYFD-VSHEHLEGALDRFAQF 139 (990)
T ss_dssp EESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHT-TTCEEEEEECSSCEEEEEE-EEGGGHHHHHHHHHGG
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH-CCCCEEEEECCCCEEEEEE-ECHHHHHHHHHHHHHH
T ss_conf 9552587799999973999999880688779980569999997-6995068988984599999-3789999999999999
Q ss_pred HHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 218887655101312033012489997864144899887320299489999999998279998887888886866888--
Q 005555 91 VFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL-- 168 (691)
Q Consensus 91 ~~~p~~~~~~~~f~~e~~~~~~~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~~i-- 168 (691)
+++|.|+++. |++| +++|.+|++...++|.+++.+.+...+|++|||++.++|++++|+++
T Consensus 140 ~~~p~f~~~~--~~~E---------------~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~ 202 (990)
T 3cww_A 140 FLSPLFDESA--KDRE---------------VNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPN 202 (990)
T ss_dssp GTCBCCCHHH--HHHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHH
T ss_pred HHCCCCCHHH--HHHH---------------HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 8575899899--9999---------------9999999985538839999999998568999963478898999840201
Q ss_pred -----CHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCC---CCCCCCHHH---HHHH------H
Q ss_conf -----9999999999615799709999908998899999644026443233223---587884146---9999------8
Q 005555 169 -----TFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRE---NNTGSFPRG---LSLM------L 231 (691)
Q Consensus 169 -----t~e~l~~fy~~~y~p~n~~l~v~Gd~d~~~~~~~i~~~~~~~~e~~~~~---~~~~~~~~~---~~~~------~ 231 (691)
++++|++||++||+|+||+|+++||+|++++++++++ .|+.++..... ......... ..+. .
T Consensus 203 ~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (990)
T 3cww_A 203 QEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVK-LFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDI 281 (990)
T ss_dssp HTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHH-HHTTSCCCCCCCCCCCSCSSCGGGSSEEEEECCSSSC
T ss_pred CCCCHHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCHHHCCEEEEEEECCCC
T ss_conf 046529999999999717786638999869999999999999-7137865788899888899996780769999987877
Q ss_pred -HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-----------CCCEEEEEEECCC---CCHH
Q ss_conf -620254348997577677248999999985119910499999986005-----------9980599982595---7024
Q 005555 232 -RSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN-----------NPHCVTVEMQPDP---EKAS 296 (691)
Q Consensus 232 -~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~s~~~~~~l~~~~~~~-----------~~~~~~i~~~p~~---~~~~ 296 (691)
.....|...... .......+..|...|..+..++.+..++++.+.. ....+.+.+.+.+ +..+
T Consensus 282 ~~l~~~~~~~~~~--~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~~~~~~~f~i~~~~~~~g~~~~~ 359 (990)
T 3cww_A 282 RNLYVTFPIPDLQ--KYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGARGFMFFIINVDLTEEGLLHVE 359 (990)
T ss_dssp CEEEEEEEECCCG--GGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEEETTEEEEEEEEECCHHHHHTHH
T ss_pred CEEEEEEECCCHH--HHHHHCHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEEECHHHHHHHH
T ss_conf 4899999768805--65555889999999569999948999987797112565356677885179999998847765499
Q ss_pred HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHCCCCCHH----------------HH----CCCCCCC-------
Q ss_conf 6999999999999-801999999999999999997709999911----------------10----3699988-------
Q 005555 297 RDEAAEKEILAKV-KSSMTKEDLAELARATEELRLKQETPDPPE----------------AL----RSVPSLS------- 348 (691)
Q Consensus 297 ~~~~~~~~~l~~~-~~~~s~eel~~~k~~~~~~~~~~~~~~~~~----------------~l----~~~~~~~------- 348 (691)
...+.+.++++.+ +.+++++++++++........+.. ..++. .+ ..+..++
T Consensus 360 ~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~t~~~i~~~ 438 (990)
T 3cww_A 360 DIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKD-KERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMV 438 (990)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCC-CCCHHHHHHHHHHHTTTSCGGGTTTTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHCCCHHHHHHH
T ss_conf 99999999999998579838999999999997366677-69979999999999862799997326224531899999999
Q ss_pred ---------------------------------------------------------------------CCCCCCCCCCC
Q ss_conf ---------------------------------------------------------------------66899999989
Q 005555 349 ---------------------------------------------------------------------LRDIPKEPIRV 359 (691)
Q Consensus 349 ---------------------------------------------------------------------~~di~~~~~~~ 359 (691)
+.+++.....+
T Consensus 439 ~~~l~~~~~~~~~~~p~~~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ip~~~~~~~~~~~~~~~ 518 (990)
T 3cww_A 439 LDKLRPENVRVAIVSKSFEGKTDRTEEWYGTQYKQEAIPDAVIAKWQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPY 518 (990)
T ss_dssp HTTCSGGGCEEEEECGGGTTCCCEECTTTCCEEEEEECCHHHHHHHHTCCCCTTCCCCCCCTTCCCCCCCCCCCTTCCSS
T ss_pred HHHCCHHHEEEEEECCCCCCCCCCCCCEECCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98469767799997377777767333163762156238999999764578874556999887788665004577788899
Q ss_pred CCCCCCCCCCEEEEEECCC----CCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 9721223890599964179----957999999518999812246848899876313999889999999985003416886
Q 005555 360 PTEVGDINGVKVLQHDLFT----NDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVY 435 (691)
Q Consensus 360 ~~~~~~~nG~~v~~~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~ 435 (691)
|....+.||++|++++.++ ++.+++.+.++.+..+.+..++++++..++... ++..++...+. |.+++++
T Consensus 519 p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~----~~~~~~~~~l~--G~~~~~~ 592 (990)
T 3cww_A 519 PALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS----LNEYAYAAELA--GLSYDLQ 592 (990)
T ss_dssp CEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH----HHHHHHHHHHT--TEEEEEE
T ss_pred CEEEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHC--CEEEEEE
T ss_conf 95654388716755168765788689999996897779999999999999999999----87864489868--7489999
Q ss_pred EEECCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 30015799999702799999865445889999999987048999278999999999998764430582799999998403
Q 005555 436 PFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKL 515 (691)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 515 (691)
++ .+++.+++++++++++.+++++.+++.+|.|+ +++++.++.+.+..+++...++|+.++...+...+
T Consensus 593 ~~----------~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~-~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l 661 (990)
T 3cww_A 593 NT----------IYGMYLSVKGYNDKQPILLKKIIEKMATFEID-EARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLM 661 (990)
T ss_dssp EE----------TTEEEEEEEEESTTHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred EC----------CCEEEEEEEECCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 76----------87599999842186899999999998658989-99999999999999886662485999999999996
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH---HHHHHHCCCC
Q ss_conf 9135699982400599999999996302999999999999999718999599997095201238999---9998820999
Q 005555 516 NTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERF---VGKFLDMLPT 592 (691)
Q Consensus 516 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~---~~~~~~~l~~ 592 (691)
++. ++ ...+.++.+..+ +.++|.+|++++|.+.++.+.|+||++ .+++.+. +.++++.+|.
T Consensus 662 ~~~-~~----~~~~~~~~l~~l----------t~~~l~~~~~~~~~~~~~~~~v~Gn~~-~~~~~~~~~~~~~~l~~l~~ 725 (990)
T 3cww_A 662 TEV-AW----TKDELKEALADV----------TLPRLKAFIPQLLSRLHIEALLHGNIT-KQAALGIMQMVEDTLIEHAH 725 (990)
T ss_dssp BSS-CC----CHHHHHHHHTTC----------CHHHHHHHHHHHHHEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCC-CC----CHHHHHHHHHCC----------CHHHHHHHHHHHHHHHEEEEEEECCCC-HHHHHHHHHHHHHHHHCCCC
T ss_conf 789-99----999999988529----------999999999999864118999975889-99999999999999834677
Q ss_pred CCCCCC----CCCCCCCC-CCCEEE--EECCCEEEEEEE-CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCC-CCCCCC
Q ss_conf 998532----22235689-986589--807670399971-246778988511899999962272032333115-997783
Q 005555 593 NSPVER----VKWKAHLP-SANEAI--VIPTQVNYVGKA-ANIFETGYKLNGSAYVISKHISNVWLWDRVRVS-GGAYGG 663 (691)
Q Consensus 593 ~~~~~~----~~~~~~~~-~~~~~~--~~~~~~~~~~~~-~~~~~~~~~d~~al~Vl~~iLg~srL~~~IRek-G~aYg~ 663 (691)
...... .......+ +....+ ..+.++++++.. ++...+++++++++.|++.||+ ++|+.+|||+ ||+||+
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ll~~il~-~~lf~~LRek~~lgY~v 804 (990)
T 3cww_A 726 TKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSENMFLELFAQIIS-EPAFNTLRTKEQLGYIV 804 (990)
T ss_dssp CEECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEEEEEECCHHHHHHHHHHHHHHH-HHHHHHHTTTTCCCSEE
T ss_pred CCCCCHHHCCCCCEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCEEE
T ss_conf 78874333133544883899869997068888883799999679999999999999999988-89999987112775799
Q ss_pred CCEECCCCCEEEE----EEEECC-CHHHHHHHC
Q ss_conf 2100478733999----983189-833554109
Q 005555 664 FCDFDSHSGVILI----FILSGP-QLVKNTRHI 691 (691)
Q Consensus 664 ~~~~~~~~g~~~~----~~y~dp-~~~~t~~~~ 691 (691)
++++....|.+.| .+++|| +..+++++|
T Consensus 805 ~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f 837 (990)
T 3cww_A 805 FSGPRRANGIQGLRFIIQSEKPPHYLESRVEAF 837 (990)
T ss_dssp EEEEEEETTEEEEEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEEEECCEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 888786389788999993799999999999999
No 4
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=1.00 E-value=1 Score=466.02 Aligned_cols=622 Identities=13% Similarity=0.094 Sum_probs=421.5
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 18999961899999996699988610388999987089999830028652222249936998212797649999999974
Q 005555 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (691)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~~~~~~~~~~~~~~~l~~l~~ 89 (691)
++|++|++.|+.++.|+|||+|||+|+||++||..+.+.+.+ ...|+.+||+|+.|+|+|++ ++..++++.+|+++.+
T Consensus 47 l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l-~~~Gg~~NA~T~~d~T~y~~-~~~~~~l~~~L~~l~d 124 (939)
T 1q2l_A 47 LVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYL-KMHGGSHNASTAPYRTAFYL-EVENDALPGAVDRLAD 124 (939)
T ss_dssp EEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHH-HTTTCEEEEEECSSCEEEEE-EECGGGHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH-HHCCCCCEEEECCCCEEEEE-EECHHHHHHHHHHHHH
T ss_conf 996725888999998569999987806888799936599999-97699515798898679999-9478999999999999
Q ss_pred HHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--
Q ss_conf 121888765510131203301248999786414489988732029948999999999827999888788888686688--
Q 005555 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPK-- 167 (691)
Q Consensus 90 ~~~~p~~~~~~~~f~~e~~~~~~~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~~-- 167 (691)
++.+|.|++++ |++| |++|.+|++...++|..++.+.+.+.+|++|||+++++|++++|++
T Consensus 125 ~~~~p~f~~~~--~~~E---------------r~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~ 187 (939)
T 1q2l_A 125 AIAEPLLDKKY--AERE---------------RNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKP 187 (939)
T ss_dssp HHHCBCCCSTT--HHHH---------------HHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBT
T ss_pred HHHCCCCCHHH--HHHH---------------HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 98577999899--9999---------------999999998564987999999999756899997667889999971678
Q ss_pred --CCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCC---CCC-HHH--HHHH------HH-
Q ss_conf --89999999999615799709999908998899999644026443233223587---884-146--9999------86-
Q 005555 168 --LTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNT---GSF-PRG--LSLM------LR- 232 (691)
Q Consensus 168 --it~e~l~~fy~~~y~p~n~~l~v~Gd~d~~~~~~~i~~~~~~~~e~~~~~~~~---~~~-~~~--~~~~------~~- 232 (691)
+++++|++||++||+|+||+|+|+||+|++++.++++ ..|+.++........ +.. +.. ..+. ..
T Consensus 188 ~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (939)
T 1q2l_A 188 GNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAA-DTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKV 266 (939)
T ss_dssp TBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHH-HTGGGSCCCCCCCCCCCSCSCCGGGSSEEEEECCSSCCCE
T ss_pred CCHHHHHHHHHHHHCCCHHHEEEEEECCCCHHHHHHHHH-HHHHHHCCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCCE
T ss_conf 845999999999961587356999974999999999999-9864333588789978889999789477999982787718
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--------C----CCEEEEEEECCC---CCHHH
Q ss_conf 20254348997577677248999999985119910499999986005--------9----980599982595---70246
Q 005555 233 SMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN--------N----PHCVTVEMQPDP---EKASR 297 (691)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~s~~~~~~l~~~~~~~--------~----~~~~~i~~~p~~---~~~~~ 297 (691)
....|...... .......+..+...|.++.++++++.++++.+.. . ...+.+.+.+.+ +..+.
T Consensus 267 l~i~~~~~~~~--~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~~~~ 344 (939)
T 1q2l_A 267 LRVEFRIDNNS--AKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQ 344 (939)
T ss_dssp EEEEEEEECCG--GGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHTHHH
T ss_pred EEEEEECCCHH--HHHHHCHHHHHHHHHCCCCCCCHHHHHHHCCCCHHEEECCCCCCCCCCEEEEEEEEECHHHHHHHHH
T ss_conf 99999768727--7665478999999956899871999998769712124334555688851899999989466652999
Q ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHCCCCCHH---------------HHC----CCCCCCCCC------
Q ss_conf 999999999999-801999999999999999997709999911---------------103----699988668------
Q 005555 298 DEAAEKEILAKV-KSSMTKEDLAELARATEELRLKQETPDPPE---------------ALR----SVPSLSLRD------ 351 (691)
Q Consensus 298 ~~~~~~~~l~~~-~~~~s~eel~~~k~~~~~~~~~~~~~~~~~---------------~l~----~~~~~~~~d------ 351 (691)
..+.+.++++.+ +.+++++|++++|..+.....+.....+.. .+. .+..+++++
T Consensus 345 ~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vt~~~i~~~~~ 424 (939)
T 1q2l_A 345 VVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLA 424 (939)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCGGGTTTTTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCHHHHHHHHH
T ss_conf 99999999999986798599999999998722034577885999999999865089999711722131069999999998
Q ss_pred ---------------------------------C-------------------CCCCC---------------CCCCCCC
Q ss_conf ---------------------------------9-------------------99999---------------8997212
Q 005555 352 ---------------------------------I-------------------PKEPI---------------RVPTEVG 364 (691)
Q Consensus 352 ---------------------------------i-------------------~~~~~---------------~~~~~~~ 364 (691)
+ +.... ..|....
T Consensus 425 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~n~~~~~~~~~~~~~~~~~~p~~~~ 504 (939)
T 1q2l_A 425 MMTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIV 504 (939)
T ss_dssp HCSGGGCEEEEECTTCCCCEECTTTCCEEEEEECCHHHHHHHHHHHHTCCCCCCCCCTTCCCCCCCCCCSSCCSSCEEEE
T ss_pred HCCHHHCEEEEECCCCCCCCCCCEECCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 46987748999827888773345437742563089999998754686535669997767886753056767899997999
Q ss_pred CCCCCEEEEEECCC--C-CEEEEEEEEECCCC--CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 23890599964179--9-57999999518999--8122468488998763139998899999999850034168863001
Q 005555 365 DINGVKVLQHDLFT--N-DVLYTEVVFDMSSL--KQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTS 439 (691)
Q Consensus 365 ~~nG~~v~~~~~~~--~-~~v~~~~~~~~g~~--~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~ 439 (691)
+.||++|++.+.+. . |.+.+.+.+..+.. +.+..+..+++..++. .|++.+ ++...+.+.+.++++ .
T Consensus 505 l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~-~g~~~~---~~~~~l~G~~~~~~~-~--- 576 (939)
T 1q2l_A 505 DESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAG-LALDQL---SNQASVGGISFSTNA-N--- 576 (939)
T ss_dssp EETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHH-HHHHHH---HHHHHHTTEEEEEEE-S---
T ss_pred ECCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHH-HHHHHH---HHHHHHCCCEEEEEE-C---
T ss_conf 77981685557875589986799999958965589999999999999999-999987---527997694899960-8---
Q ss_pred CCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH
Q ss_conf 57999997027999998654458899999999870489992789999999999987644305827999999984039135
Q 005555 440 SIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (691)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (691)
+.+.+++++.+++++.+|+++.+++.+|.|+ +++++.++++.+..+++...+++...+...+...++...
T Consensus 577 ---------~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~-~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~ 646 (939)
T 1q2l_A 577 ---------NGLMVNANGYTQRLPQLFQALLEGYFSYTAT-EDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPY 646 (939)
T ss_dssp ---------SEEEEEEEEESSSHHHHHHHHHHHHHHCCCC-SHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSC
T ss_pred ---------CCEEEEEECCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf ---------9579999765676999999999997478989-999999999999997634206839999999999966899
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 69998240059999999999630299999999999999971899959999709520123899999988209999985322
Q 005555 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (691)
Q Consensus 520 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (691)
....+..+.+..+ +.+++++||+++|.+.++.+.|+||++ .++++++++.+++.|+........
T Consensus 647 -----~~~~~~~~~l~~i----------t~~~l~~f~~~~~~~~~~~~~vvGn~~-~~~~~~l~~~~~~~l~~~~~~~~~ 710 (939)
T 1q2l_A 647 -----FSRDERRKILPSI----------TLKEVLAYRDALKSGARPEFMVIGNMT-EAQATTLARDVQKQLGADGSEWCR 710 (939)
T ss_dssp -----CCHHHHHHHGGGC----------CHHHHHHHHHHHHTTCEEEEEEEESCC-HHHHHHHHHHHHHHHTCCCSCCCC
T ss_pred -----CCHHHHHHHHHCC----------CHHHHHHHHHHHHHHHEEEEEEECCCC-HHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf -----9999999998518----------999999999999864208999975989-999999999999997368865554
Q ss_pred C-CCCCCCCCCEEEEECC--CEEEE-EEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCC-CCCCCCCCEECCCCC--
Q ss_conf 2-2356899865898076--70399-971246778988511899999962272032333115-997783210047873--
Q 005555 600 K-WKAHLPSANEAIVIPT--QVNYV-GKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVS-GGAYGGFCDFDSHSG-- 672 (691)
Q Consensus 600 ~-~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~d~~al~Vl~~iLg~srL~~~IRek-G~aYg~~~~~~~~~g-- 672 (691)
. ......+....+..+. .++.+ ...++....+.++...+.+|+.++. +|||++|||+ |++|+++++.....+
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~-s~lf~~LRek~gl~Y~v~s~~~~~~~~~ 789 (939)
T 1q2l_A 711 NKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQ-PWFYNQLRTEEQLGYAVFAFPMSVGRQW 789 (939)
T ss_dssp CEEECCCSCEEEEEEECCSSSCEEEEEEEECSSCCHHHHHHHHHHHHHHHH-HHHTHHHHTSCCSSSCEEEEEEEETTEE
T ss_pred CCEEEECCCCEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCEEEEEEEECCCEE
T ss_conf 535870799548996689998742699999669999999999999999988-8889999999874715534676539756
Q ss_pred EEEEEEEE-CCCHHHHH
Q ss_conf 39999831-89833554
Q 005555 673 VILIFILS-GPQLVKNT 688 (691)
Q Consensus 673 ~~~~~~y~-dp~~~~t~ 688 (691)
.+.|++.. ..++....
T Consensus 790 g~~~~i~s~~~~p~~~~ 806 (939)
T 1q2l_A 790 GMGFLLQSNDKQPSFLW 806 (939)
T ss_dssp EEEEEEEESSSCHHHHH
T ss_pred EEEEEEECCCCCHHHHH
T ss_conf 89999987999989999
No 5
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=1.00 E-value=1 Score=300.00 Aligned_cols=299 Identities=12% Similarity=0.086 Sum_probs=233.2
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEEECCCCCC-CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 22389059996417995799999951899981-22468488998763139998899999999850034168863001579
Q 005555 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (691)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~ 442 (691)
+++||++|++.+.++.+++++.++|++|+..+ ....++++|+++|++.||++++..++.+.++.+||+++++++
T Consensus 6 ~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~----- 80 (421)
T 3hdi_A 6 TLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTS----- 80 (421)
T ss_dssp ECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEEC-----
T ss_pred ECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEC-----
T ss_conf 869998899998799977999999823457889998867999999862798999999999999984881202435-----
Q ss_pred CCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 99997027999998654458899999999870489992789999999999987644305827999999984039135699
Q 005555 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWIS 522 (691)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 522 (691)
.+.++|++++++++++.+|++++|++.+|.|+ ++.++..+...+..++... +++...+...+...+++++++.
T Consensus 81 -----~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~-~~~~~~ek~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~p~~ 153 (421)
T 3hdi_A 81 -----KEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQ-KEELEKERKVVFEEIKMVD-DTPDDIVHDLLSSATYGKHSLG 153 (421)
T ss_dssp -----SSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCC-HHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTSGGG
T ss_pred -----CCEEEEEEEECHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHCCCCCCC
T ss_conf -----65699999964877999999999998689999-8999999999999998756-8888999999999824899999
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 98240059999999999630299999999999999971899959999709520123899999988209999985322223
Q 005555 523 EQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWK 602 (691)
Q Consensus 523 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 602 (691)
....|. .+.+..++ .++|++||+++|.|+|++++|+||++ +++.+.++++|+.|+........ ..
T Consensus 154 ~~~~G~--~~~l~~it----------~~~l~~f~~~~y~p~n~~l~v~Gd~~--~~~~~~v~~~f~~~~~~~~~~~~-~~ 218 (421)
T 3hdi_A 154 YPILGT--VETLNSFN----------EGMLRHYMDRFYTGDYVVISVAGNVH--DELIDKIKETFSQVKPTTYNYQG-EK 218 (421)
T ss_dssp SCTTCC--HHHHHHCC----------HHHHHHHHHHHSSTTTEEEEEEESCC--HHHHHHHHHHTTSSCCCCCCCCC-CC
T ss_pred CCCCCC--HHHHHHCC----------HHHHHHHHHHHCCCCCEEEEEEECCC--HHHHHHHHHHHCCCCCCCCCCCC-CC
T ss_conf 988689--89997599----------99999999984484667999980887--99999999983688888888788-98
Q ss_pred CCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHC---CCCCHHHHHCC-CCCCCCCCEECCC--CCEEEE
Q ss_conf 56899865898076703999712467789885118999999622---72032333115-9977832100478--733999
Q 005555 603 AHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVS-GGAYGGFCDFDSH--SGVILI 676 (691)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~Vl~~iLg---~srL~~~IRek-G~aYg~~~~~~~~--~g~~~~ 676 (691)
+...........+.+++++.+++++++++++|++++.|++.||| +||||++|||+ |+|||+++++... .|.+.+
T Consensus 219 ~~~~~~~~~~~~~~~q~~v~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i 298 (421)
T 3hdi_A 219 PMFLPNRIVRKKETEQAHLCLGYPGLPIGDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTI 298 (421)
T ss_dssp CCCCCCEEEEECCCSEEEEEEEEECCCTTCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEE
T ss_pred CCCCCCEEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCEEEE
T ss_conf 87788538860788845899997669989816999999999967996327999998735977999975146678836999
Q ss_pred EEEECC-CHHHHHH
Q ss_conf 983189-8335541
Q 005555 677 FILSGP-QLVKNTR 689 (691)
Q Consensus 677 ~~y~dp-~~~~t~~ 689 (691)
++.++| +..++++
T Consensus 299 ~~~~~~~~~~~~~~ 312 (421)
T 3hdi_A 299 YAGTGHDQLDDLVY 312 (421)
T ss_dssp EEEEEGGGHHHHHH
T ss_pred EEEECHHHHHHHHH
T ss_conf 99808878999999
No 6
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=298.07 Aligned_cols=280 Identities=11% Similarity=0.042 Sum_probs=128.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEEECCCCCC-CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 22389059996417995799999951899981-22468488998763139998899999999850034168863001579
Q 005555 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (691)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~ 442 (691)
+++||++|++.+.+..+.+++.+++++|+..+ ....++++|+++|++.||++++..++.+.++.+||.+|++++
T Consensus 6 ~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~----- 80 (406)
T 3eoq_A 6 ELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTS----- 80 (406)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEEC-----
T ss_pred ECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEC-----
T ss_conf 868999899998799976999999854257889998889999999871799999989999999984887352644-----
Q ss_pred CCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 99997027999998654458899999999870489992789999999999987644305827999999984039135699
Q 005555 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWIS 522 (691)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 522 (691)
.+.++|++++++++++.++++++|++ +|.|+ ++.+...+......++... +++...+...+...++++|++.
T Consensus 81 -----~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~-~~~~~~ek~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~p~~ 152 (406)
T 3eoq_A 81 -----EEATVYYGAVLPEFAYDLLGLFAKLL-RPALR-EEDFQTEKLVILEEIARYQ-DRPGFMAYEWARARFFQGHPLG 152 (406)
T ss_dssp -----SSCEEEEEEECGGGHHHHHHHHHHHT-SCCCC-HHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCGGG
T ss_pred -----CCEEEEEEEECHHHHHHHHHHHHHHH-CCCCC-HHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCCCCC
T ss_conf -----77489999955788999999999985-68999-8999999999999998742-9978999999999843899998
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 98240059999999999630299999999999999971899959999709520123899999988209999985322223
Q 005555 523 EQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWK 602 (691)
Q Consensus 523 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 602 (691)
+...|. .+.+..++ .++|++||+++|.|+|++++|+||++ .+++.+.++++|+.|+..+.+.. ..+
T Consensus 153 ~~~~G~--~~~i~~~t----------~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~-~~~ 218 (406)
T 3eoq_A 153 NSVLGT--RESITALT----------REGMAAYHRRRYLPKNMVLAATGRVD-FDRLLAEAERLTEAWPEGEAERA-YPP 218 (406)
T ss_dssp CCSSCC--HHHHHHCC----------HHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTCCCCCCCCC-CCC
T ss_pred CCCCCC--HHHHHHCC----------HHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHHHHCCCCCCCCCCC-CCC
T ss_conf 888689--99996389----------99999999984886677999984899-99999999998357887888988-898
Q ss_pred CCCCCCCEEEEECC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHC---CCCCHHHHHCCCCCCCCCCEECCC
Q ss_conf 56899865898076-703999712467789885118999999622---720323331159977832100478
Q 005555 603 AHLPSANEAIVIPT-QVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDSH 670 (691)
Q Consensus 603 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~al~Vl~~iLg---~srL~~~IRekG~aYg~~~~~~~~ 670 (691)
....++...+..+. +++++.+++++++++++|++++.|++.||| +|||+++|||+|+||++++++..+
T Consensus 219 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~ 290 (406)
T 3eoq_A 219 LTPAFGVEERPYEKARALYLVALFPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEA 290 (406)
T ss_dssp CCCCCEEEEEECTTCSSEEEEEEEECCCTTCTTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEEC
T ss_pred CCCCCCEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 788884699836873505899994479988811999999999967996248899999759746999874056
No 7
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=1.00 E-value=1 Score=291.57 Aligned_cols=301 Identities=12% Similarity=-0.009 Sum_probs=177.6
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEEECCCCCC-CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 22389059996417995799999951899981-22468488998763139998899999999850034168863001579
Q 005555 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (691)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~ 442 (691)
++.||++|++.+.+ .+++++.++|++|+..+ +...++++|+++|++.||++++..++.+.++.+||+++++++
T Consensus 18 ~L~NGl~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~----- 91 (446)
T 1pp9_A 18 QLDNGLRVASEQSS-QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYST----- 91 (446)
T ss_dssp ECTTCCEEEEEECS-CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEEC-----
T ss_pred ECCCCCEEEEEECC-CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEC-----
T ss_conf 99999889999679-987999999753048899998738999999751789999989999999970997999976-----
Q ss_pred CCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 99997027999998654458899999999870489992789999999999987644305827999999984039135699
Q 005555 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWIS 522 (691)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 522 (691)
.+.++|++++++++++.++++++|++.+|.|++ +.++..+......++... +++...+...+...+++++++.
T Consensus 92 -----~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~ek~~v~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (446)
T 1pp9_A 92 -----REHTAYYIKALSKDLPKAVELLADIVQNCSLED-SQIEKERDVILQELQEND-TSMRDVVFNYLHATAFQGTPLA 164 (446)
T ss_dssp -----SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCH-HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTSGGG
T ss_pred -----CCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHCCCCCCC
T ss_conf -----876999999257889999999999985799998-999999999999998634-2888999999999862899999
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 98240059999999999630299999999999999971899959999709520123899999988209999985322223
Q 005555 523 EQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWK 602 (691)
Q Consensus 523 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 602 (691)
+...|. .+.+..+ +.++|++||+++|+|+|++++|+||++ .+++.+.++++|+.|+........+++
T Consensus 165 ~~~~G~--~~~l~~~----------~~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~~~~~ 231 (446)
T 1pp9_A 165 QSVEGP--SENVRKL----------SRADLTEYLSRHYKAPRMVLAAAGGLE-HRQLLDLAQKHFSGLSGTYDEDAVPTL 231 (446)
T ss_dssp SCSSCC--HHHHHHC----------CHHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTSCSCCCSSCCCCC
T ss_pred CCCCCC--HHHHHHC----------CHHHHHHHHHHCCCCCCEEEEEECCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 998588--8999747----------999999999944678877999980899-999999999982368888887766667
Q ss_pred -CCCCCCCEE-EEE-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHC------------CCCCHHHHHCCCCCCCCCCEE
Q ss_conf -568998658-980-76703999712467789885118999999622------------720323331159977832100
Q 005555 603 -AHLPSANEA-IVI-PTQVNYVGKAANIFETGYKLNGSAYVISKHIS------------NVWLWDRVRVSGGAYGGFCDF 667 (691)
Q Consensus 603 -~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~d~~al~Vl~~iLg------------~srL~~~IRekG~aYg~~~~~ 667 (691)
.+....... +.. +.+++++.+++++++++++|++++.|++.+|| +||||++||++|+|||+++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~ 311 (446)
T 1pp9_A 232 SPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFN 311 (446)
T ss_dssp CCCCCCCEEEEEEETTSSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEC
T ss_conf 78887896589705885405899997348999950999999999819986457888987779999998649838998850
Q ss_pred CC--CCCEEEEEEEECC-CHHHHHHH
Q ss_conf 47--8733999983189-83355410
Q 005555 668 DS--HSGVILIFILSGP-QLVKNTRH 690 (691)
Q Consensus 668 ~~--~~g~~~~~~y~dp-~~~~t~~~ 690 (691)
.. ..|.+.++++++| +..++++.
T Consensus 312 ~~~~~~g~~~i~~~~~~~~~~~~~~~ 337 (446)
T 1pp9_A 312 ICYADTGLLGAHFVCDHMSIDDMMFV 337 (446)
T ss_dssp EECSSCEEEEEEEEECTTSHHHHHHH
T ss_pred CCCCCCEEEEEEEEECHHHHHHHHHH
T ss_conf 56778769999999778779999999
No 8
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=1.00 E-value=1 Score=287.51 Aligned_cols=302 Identities=9% Similarity=0.012 Sum_probs=227.5
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEEECCCCCC-CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 22389059996417995799999951899981-22468488998763139998899999999850034168863001579
Q 005555 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (691)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~ 442 (691)
++.||++|++.+.++.++|+++++|++|+..+ +...++++|+++|++.||++++..++.+.++.+||+++++++
T Consensus 11 ~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t~----- 85 (443)
T 1hr6_B 11 KLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTS----- 85 (443)
T ss_dssp ECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEEC-----
T ss_pred ECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEC-----
T ss_conf 989988899997799987999999851137899998768999998750588899989999999975996789987-----
Q ss_pred CCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 99997027999998654458899999999870489992789999999999987644305827999999984039135699
Q 005555 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWIS 522 (691)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 522 (691)
.+.+.|++++++++++.+|+++.|++.+|.|++ +.++..+......++... ++++..+...+...+++++++.
T Consensus 86 -----~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~e~~~v~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 158 (443)
T 1hr6_B 86 -----RENTVYYAKSLQEDIPKAVDILSDILTKSVLDN-SAIERERDVIIRESEEVD-KMYDEVVFDHLHEITYKDQPLG 158 (443)
T ss_dssp -----SSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCH-HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTSGGG
T ss_pred -----CCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHCCCCCCC
T ss_conf -----876899999647779999999999985789999-999999999999998412-7848899999999734799898
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-
Q ss_conf 9824005999999999963029999999999999997189995999970952012389999998820999998532222-
Q 005555 523 EQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW- 601 (691)
Q Consensus 523 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 601 (691)
+...|. .+.+..++ .++|++||+++|.|+|++++|+||++ .+++.+.++++|+.||....+.....
T Consensus 159 ~~~~g~--~~~i~~~~----------~~~l~~f~~~~y~~~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~~~~~ 225 (443)
T 1hr6_B 159 RTILGP--IKNIKSIT----------RTDLKDYITKNYKGDRMVLAGAGAVD-HEKLVQYAQKYFGHVPKSESPVPLGSP 225 (443)
T ss_dssp SCSSCC--HHHHHHCC----------HHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTSCCCSSCCCTTSC
T ss_pred CCCCCC--HHHHHHCC----------HHHHHHHHHHCCCCCCEEEEEECCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 888389--99996489----------99999999944767777999985999-999999999983579988888776545
Q ss_pred ---CCCCCCCCEEEEE-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHC------------CCCCHHHHHCC-CCCCCCC
Q ss_conf ---3568998658980-76703999712467789885118999999622------------72032333115-9977832
Q 005555 602 ---KAHLPSANEAIVI-PTQVNYVGKAANIFETGYKLNGSAYVISKHIS------------NVWLWDRVRVS-GGAYGGF 664 (691)
Q Consensus 602 ---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~al~Vl~~iLg------------~srL~~~IRek-G~aYg~~ 664 (691)
.....+....+.. +.+++++.+++++++++++|++++.|++.+|| +||||++|||+ |+||+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~ 305 (443)
T 1hr6_B 226 RGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYM 305 (443)
T ss_dssp CSSCCCCCCEEEEEECTTCSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEE
T ss_pred CCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 57888877876874268855058999970599999418999999998089865578888866689999998709748998
Q ss_pred CEECC--CCCEEEEEEEEC--C-CHHHHHHH
Q ss_conf 10047--873399998318--9-83355410
Q 005555 665 CDFDS--HSGVILIFILSG--P-QLVKNTRH 690 (691)
Q Consensus 665 ~~~~~--~~g~~~~~~y~d--p-~~~~t~~~ 690 (691)
+.+.. ..|.+.++++++ | +..++++.
T Consensus 306 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 336 (443)
T 1hr6_B 306 SFSTSYADSGLWGMYIVTDSNEHNVRLIVNE 336 (443)
T ss_dssp EEEEECSSCEEEEEEEEEETTTCCHHHHHHH
T ss_pred EEECCCCCCEEEEEEEEECCCHHHHHHHHHH
T ss_conf 6524777762799999826876679999999
No 9
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=1.00 E-value=1 Score=286.07 Aligned_cols=303 Identities=13% Similarity=0.141 Sum_probs=241.4
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 21223890599964179957999999518999812246848899876313999889999999985003416886300157
Q 005555 362 EVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (691)
Q Consensus 362 ~~~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~ 441 (691)
..+++||++|++.+.++.|++++.++|++|+..++...+++++.++|++.||++++..++.+.++.+|++++++++
T Consensus 16 ~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t~---- 91 (434)
T 3gwb_A 16 TWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQDGNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGAY---- 91 (434)
T ss_dssp EEECTTCCEEEEEECCSSSEEEEEEEESCSGGGCTTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEEC----
T ss_pred EEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEEC----
T ss_conf 9986898199999779997799999994565457761669999999986576569999999999972978985406----
Q ss_pred CCCCCCEEEEEEEEEECCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH
Q ss_conf 99999702799999865445--8899999999870489992789999999999987644305827999999984039135
Q 005555 442 HGKEDPCCCMVVRGKAMAGQ--AEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (691)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~--~~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (691)
.+.+.+++++++++ ++.+++++.+++.+|.|+ +++++..+...+..+++.. +++...+...+...+++++
T Consensus 92 ------~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~-~~~~~~~~~~~~~e~~~~~-~~p~~~~~~~~~~~~~~~~ 163 (434)
T 3gwb_A 92 ------KDMAVASLRSLSAVDKREPALKLFAEVVGKPTFP-ADSLARIKNQMLAGFEYQK-QNPGKLASLELMKRLYGTH 163 (434)
T ss_dssp ------SSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTS
T ss_pred ------CCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHCCCC
T ss_conf ------7738999996175213899999999998689989-8999999999999999865-6989999999999826999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 69998240059999999999630299999999999999971899959999709520123899999988209999985322
Q 005555 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (691)
Q Consensus 520 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (691)
++.+...|.. +.+..+ +.++|++||+++|.|+|++++|+||++ .+++.+.++++|+.||....+...
T Consensus 164 ~~~~~~~G~~--~~l~~i----------t~~~l~~f~~~~y~~~~~~l~v~G~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 230 (434)
T 3gwb_A 164 PYAHASDGDA--KSIPPI----------TLAQLKAFHAKAYAAGNVVIALVGDLS-RSDAEAIAAQVSAALPKGPALAKI 230 (434)
T ss_dssp TTSSCTTCCT--TTTTTC----------CHHHHHHHHHHHSCGGGEEEEEEESCC-HHHHHHHHHHHHHHSCCCCCCCCC
T ss_pred CCCCCCCCCH--HHHHHC----------CHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9988998999--999718----------999999999986285773999983899-999999999997448899998888
Q ss_pred CCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHC----CCCCHHHHHCC-CCCCCCCCEECCCC--C
Q ss_conf 22356899865898076703999712467789885118999999622----72032333115-99778321004787--3
Q 005555 600 KWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS----NVWLWDRVRVS-GGAYGGFCDFDSHS--G 672 (691)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~Vl~~iLg----~srL~~~IRek-G~aYg~~~~~~~~~--g 672 (691)
..+....+....+..+.+++++.+++++++++++|++++.|++.||| +||||++|||+ |++|++++++.... |
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g 310 (434)
T 3gwb_A 231 EQPAEPKASIGHIEFPSSQTSLMLAQLGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARG 310 (434)
T ss_dssp CCCCCCCCEEEEEECCSSEEEEEEEEECCBTTCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCC
T ss_pred CCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCE
T ss_conf 88878998269986899751687157688999964689999999848996345448999850698512102235678863
Q ss_pred EEEEEEEECC-CHHHHHH
Q ss_conf 3999983189-8335541
Q 005555 673 VILIFILSGP-QLVKNTR 689 (691)
Q Consensus 673 ~~~~~~y~dp-~~~~t~~ 689 (691)
.+.+++.++| +..++++
T Consensus 311 ~~~i~~~~~~~~~~~~~~ 328 (434)
T 3gwb_A 311 PFMINLQTRAEMSEGTLK 328 (434)
T ss_dssp EEEEEEEEEGGGHHHHHH
T ss_pred EEEEEEECCHHHHHHHHH
T ss_conf 699999626000999999
No 10
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=281.02 Aligned_cols=324 Identities=20% Similarity=0.213 Sum_probs=239.5
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 18999961899999996699988610388999987089999830028652222249936998212797649999999974
Q 005555 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (691)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~~~~~~~~~~~~~~~l~~l~~ 89 (691)
++|++|++.|+.++.|+|||+|||+|+||++|+..++. +.+ +.+|+.+||+|+.|+|+|++ ++..++++.+|+++.+
T Consensus 28 l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~-~~l-~~~G~~~na~t~~d~t~y~~-~~~~~~l~~~l~ll~d 104 (406)
T 3eoq_A 28 YFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVN-RAF-DRMGAQYNAFTSEEATVYYG-AVLPEFAYDLLGLFAK 104 (406)
T ss_dssp EEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHH-HHH-HHTTCEEEEEECSSCEEEEE-EECGGGHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH-HHH-HHHCCCCCCEECCCEEEEEE-EECHHHHHHHHHHHHH
T ss_conf 99854257889998889999999871799999989999-999-98488735264477489999-9557889999999999
Q ss_pred HHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12188876551013120330124899978641448998873202994899999999982799988878888868668889
Q 005555 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (691)
Q Consensus 90 ~~~~p~~~~~~~~f~~e~~~~~~~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~~it 169 (691)
++ +|.|++++ |++| |+++.+|++...++|..++.+.+.+.+|++|||+++++|++++|++++
T Consensus 105 ~~-~p~f~~~~--~~~e---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t 166 (406)
T 3eoq_A 105 LL-RPALREED--FQTE---------------KLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALT 166 (406)
T ss_dssp HT-SCCCCHHH--HHHH---------------HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCC
T ss_pred HH-CCCCCHHH--HHHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCC
T ss_conf 85-68999899--9999---------------999999998742997899999999984389999888868999996389
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCH-H-HH-----HH-HHH-HHCCCCCC
Q ss_conf 9999999996157997099999089988999996440264432332235878841-4-69-----99-986-20254348
Q 005555 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFP-R-GL-----SL-MLR-SMGKWIYD 240 (691)
Q Consensus 170 ~e~l~~fy~~~y~p~n~~l~v~Gd~d~~~~~~~i~~~~~~~~e~~~~~~~~~~~~-~-~~-----~~-~~~-~~~~~~~~ 240 (691)
.++|++||++||+|+|++|+++||+|++++.+++++ .|+.++...........+ . +. .. ... ....|.
T Consensus 167 ~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~-- 243 (406)
T 3eoq_A 167 REGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAER-LTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVALFP-- 243 (406)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHH-HHTTCCCCCCCCCCCCCCCCCEEEEEECTTCSSEEEEEEEE--
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEC--
T ss_conf 999999999848866779999848999999999999-83578878889888987888846998368735058999944--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCC----------CCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-
Q ss_conf 99757767724899999998511991049999998600----------5998059998259570246999999999999-
Q 005555 241 MNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYIL----------NNPHCVTVEMQPDPEKASRDEAAEKEILAKV- 309 (691)
Q Consensus 241 ~~~~~~l~~~~~l~~L~~~l~~~~s~~~~~~l~~~~~~----------~~~~~~~i~~~p~~~~~~~~~~~~~~~l~~~- 309 (691)
..+. .-.....+.++...|.+..++++++.++++.+. .....+.+...++++..+...+.+.++++.+
T Consensus 244 ~~~~-~~~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~ 322 (406)
T 3eoq_A 244 GVAY-QEEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLG 322 (406)
T ss_dssp CCCT-TCTTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 7998-881199999999996799624889999975974699987405678637999998473329999999999999998
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHH---------------------HCCCCCCCCCCCCCCCCCCC
Q ss_conf 8019999999999999999977099999111---------------------03699988668999999899
Q 005555 310 KSSMTKEDLAELARATEELRLKQETPDPPEA---------------------LRSVPSLSLRDIPKEPIRVP 360 (691)
Q Consensus 310 ~~~~s~eel~~~k~~~~~~~~~~~~~~~~~~---------------------l~~~~~~~~~di~~~~~~~~ 360 (691)
+.+++++||+++|.++...... +.+++.. ++.+.+++++||.+..+++.
T Consensus 323 ~~~~t~~el~~ak~~l~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l 392 (406)
T 3eoq_A 323 REGVGEEEVERAKTPLATGLVF--AGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGF 392 (406)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHH--HTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HCCCCHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf 5799999999999999977877--347899999999999996699899999999998289999999999865
Done!