BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005556
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ +D G T L L AI+G+L+ ++L+KH ++
Sbjct: 27 DDEVRIL---MANGADVN------AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
++ P+HLAAL+GH + E LL+
Sbjct: 78 KMGDT-PLHLAALYGHLEIVEVLLK 101
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ D G+T L L A+ G+L+ ++L+K+ ++ T P+HLAA GH + E
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDT-YGFTPLHLAADAGHLEIVEV 131
Query: 202 LLE 204
LL+
Sbjct: 132 LLK 134
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ D GNT L L A +L+ ++L+KH ++
Sbjct: 27 DDEVRIL---MANGADVN------ANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAH 76
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
N S P+HLAALFGH + E LL+
Sbjct: 77 DNDGSTPLHLAALFGHLEIVEVLLK 101
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ D G T L L A RG+L+ ++L+KH ++ +
Sbjct: 27 DDEVRIL---MANGADVN------AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
P+HLAA GH + E LLE
Sbjct: 78 I-WGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ D G T L L A RG+L+ ++L+KH ++
Sbjct: 27 DDEVRIL---MANGADVN------AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
+ P+HLAA GH + E LLE
Sbjct: 78 S-WGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2INY|A Chain A, Nanoporous Crystals Of Chicken Embryo Lethal Orphan (celo)
Adenovirus Major Coat Protein, Hexon
Length = 942
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 266 FESGSRLGC--LEGFIYKCIPVTKQLSQTNDNPNVAGDTENGIGTTNGH-SKKSIPYGST 322
F+ SR G L+ +Y + T ++ T P +++ + +G + +S P +
Sbjct: 770 FDPMSRQGPNFLDTTLYDLVSSTPVVNDTGSQP-----SQDNVRNNSGFIAPRSWPVWTA 824
Query: 323 QQITTYDAKWPCFKAIYAEKLTHMRTVEIVRFICENVIWT 362
QQ + A WP + I + ++ +TV +F+C+N +WT
Sbjct: 825 QQGEAWPANWP-YPLIGNDAISSNQTVNYKKFLCDNYLWT 863
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ + D G T L L A G+L+ ++L+KH ++
Sbjct: 27 DDEVRIL---MANGADVNAT------DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
S P+HLAAL GH + E LL+
Sbjct: 78 I-XGSTPLHLAALIGHLEIVEVLLK 101
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 146 DGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
D G+T L L A+ G+L+ ++L+KH ++ T ++ P+HLAA+ GH + E LL+
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT-PLHLAAIMGHLEIVEVLLK 134
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ + D G T L L A G+L+ ++L+KH ++
Sbjct: 27 DDEVRIL---MANGADVNAT------DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
S P+HLAAL GH + E LL+
Sbjct: 78 I-MGSTPLHLAALIGHLEIVEVLLK 101
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 149 GNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
G+T L L A+ G+L+ ++L+KH ++ T ++ P+HLAA+ GH + E LL+
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT-PLHLAAIMGHLEIVEVLLK 134
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ D G T L L A RG+L+ ++L+KH ++
Sbjct: 27 DDEVRIL---MANGADVN------AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
P+HLAA GH + E LLE
Sbjct: 78 I-WGRTPLHLAATVGHLEIVEVLLE 101
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 145 KDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
KD GN V+ A G L + L++ + ++ I + N+ +LP+HLAA GH E+L++
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 205 ETPGRVENFYCGGDGGRLLSDLIKAN 230
T V + GD L+ L N
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRN 150
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 134 TDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALF 193
T ++ ++ +D GN L L A G+L+ + LVKH + + ++ LA L+
Sbjct: 88 TLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 194 GHKDTFEYLLEETPGRVENF 213
G + + G N
Sbjct: 148 GRNEVVSLMQANGAGGATNL 167
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 146 DGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSL----PVHLAALFGHKDTFEY 201
D G T L L A+ G+L+ ++L+K+ ++ N N + P+HLAA+FGH + E
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADV-----NANDMEGHTPLHLAAMFGHLEIVEV 131
Query: 202 LLE 204
LL+
Sbjct: 132 LLK 134
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ KD G T L L A G+L+ K+L++ ++ K N + P+HLAA GH + +
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT-PLHLAARNGHLEVVKL 86
Query: 202 LLE 204
LLE
Sbjct: 87 LLE 89
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ KD G T L L A G+L+ K+L++ ++ K N + P+HLAA GH + +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT-PLHLAARNGHLEVVKL 119
Query: 202 LLE 204
LLE
Sbjct: 120 LLE 122
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 149 GNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
G T L L A G+L+ K+L++ ++ K N + P+HLAA GH + + LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT-PLHLAARNGHLEVVKLLLE 56
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ KD G T L L A G+L+ K+L++ ++ K N + P+HLAA GH + +
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT-PLHLAARNGHLEVVKL 86
Query: 202 LLE 204
LLE
Sbjct: 87 LLE 89
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 149 GNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
G T L L A G+L+ K+L++ ++ K N + P+HLAA GH + + LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT-PLHLAARNGHLEVVKLLLE 56
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ + D G T L L A G+L+ ++L+KH ++
Sbjct: 27 DDEVRIL---MANGADVNAA------DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
+ P+HLAA +GH + E LL+
Sbjct: 78 VFGYT-PLHLAAYWGHLEIVEVLLK 101
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 130 LAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHL 189
L DVD S+ G T L L A G+L+ ++L+K+ ++ ++ + P+HL
Sbjct: 67 LKHGADVDASDVF------GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMT-PLHL 119
Query: 190 AALFGHKDTFEYLLE 204
AA +G+ + E LL+
Sbjct: 120 AAKWGYLEIVEVLLK 134
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE LI A DV+ D G T L L A+ G+L+ ++L+KH ++
Sbjct: 27 DDEVRILI---ANGADVN------AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
P+HLAA+ GH + E LL+
Sbjct: 78 V-YGFTPLHLAAMTGHLEIVEVLLK 101
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 130 LAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHL 189
L DVD ++ G T L L A+ G+L+ ++L+K+ ++ S P+HL
Sbjct: 67 LKHGADVDAADVY------GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT-GSTPLHL 119
Query: 190 AALFGHKDTFEYLLE 204
AA GH + E LL+
Sbjct: 120 AADEGHLEIVEVLLK 134
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 119 TDDEATDLIDKLAQSTDVDISETL-------SCKDGGGNTVLSLCAIRGNLKASKILVKH 171
TD++ + A + ++I E L + D G T L L A G+L+ ++L+KH
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 172 KHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
++ N P+HLAA +GH + E LL+
Sbjct: 103 GADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 146 DGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
D G+T L L A RG+L+ ++L+K+ ++ T S P+HLAA GH + E LL+
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDT-IGSTPLHLAADTGHLEIVEVLLK 134
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ ++ + G T L L A G+L+ ++L+K+ ++
Sbjct: 27 DDEVRIL---MANGADVNAADVV------GWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
T S P+HLAA FGH + E LL+
Sbjct: 78 T-LGSTPLHLAAHFGHLEIVEVLLK 101
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 130 LAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHL 189
L DV+ +TL G+T L L A G+L+ ++L+K+ ++ K N + P+HL
Sbjct: 67 LKNGADVNAYDTL------GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGIT-PLHL 119
Query: 190 AALFGHKDTFEYLLE 204
AA GH + E LL+
Sbjct: 120 AANRGHLEIVEVLLK 134
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 145 KDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
KD G V+ A G L + L++ + ++ I + N+ +LP+HLAA GH E+L++
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 205 ETPGRVENFYCGGDGGRLLSDLIKAN 230
T V + GD L+ L N
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRN 150
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 126 LIDKLAQSTDVDISETL-------SCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIK 178
+I A++ +D +TL + +D GN L L A G+L+ + LVKH +
Sbjct: 73 VIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 179 QTNQNSLPVHLAALFGHKDTFEYLLEETPGRVENF 213
+ ++ LA L+G + + G N
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLMQANGAGGATNL 167
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ KD G T L L A G+L+ ++L+K ++ K
Sbjct: 15 DDEVRIL---MANGADVN------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
+ + P+HLAA GH + E LL+
Sbjct: 66 KDGYT-PLHLAAREGHLEIVEVLLK 89
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ KD G T L L A G+L+ ++L+K ++ K + + P+HLAA GH + E
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT-PLHLAAREGHLEIVEV 119
Query: 202 LLE 204
LL+
Sbjct: 120 LLK 122
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ KD G T L L A G+L+ ++L+K ++ K
Sbjct: 15 DDEVRIL---MANGADVN------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
+ + P+HLAA GH + E LL+
Sbjct: 66 KDGYT-PLHLAAREGHLEIVEVLLK 89
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ KD G T L L A G+L+ ++L+K ++ K + + P+HLAA GH + E
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT-PLHLAAREGHLEIVEV 119
Query: 202 LLE 204
LL+
Sbjct: 120 LLK 122
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ KD G T L L A G+L+ ++L+K ++ K
Sbjct: 27 DDEVRIL---MANGADVN------AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
+ + P+HLAA GH + E LL+
Sbjct: 78 KDGYT-PLHLAAREGHLEIVEVLLK 101
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ KD G T L L A G+L+ ++L+K ++ K + + P+HLAA GH + E
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT-PLHLAAREGHLEIVEV 131
Query: 202 LLE 204
LL+
Sbjct: 132 LLK 134
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 145 KDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
KD G V+ A G L + L++++ ++ I + N+ +LP+HLAA GH E+L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 205 ETPGRVENFYCGGDGGRLLSDLIKAN 230
T V + GD L+ L N
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRN 150
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 130 LAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHL 189
L DV+I +D GN L L A G+L+ + LVKH + + ++ L
Sbjct: 90 LENQADVNI------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143
Query: 190 AALFGHKDTFEYLLEETPGRVENF 213
A L+G + + G N
Sbjct: 144 ARLYGRNEVVSLMQANGAGGATNL 167
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 130 LAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSL-PVH 188
L DV+ ++L G T L L A RG+L+ ++L+K+ + + + N P+H
Sbjct: 67 LKNGADVNADDSL------GVTPLHLAADRGHLEVVEVLLKNGAD--VNANDHNGFTPLH 118
Query: 189 LAALFGHKDTFEYLLE 204
LAA GH + E LL+
Sbjct: 119 LAANIGHLEIVEVLLK 134
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 146 DGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
D G T L L A G+L+ ++L+KH ++ K + P+HLAA GH + E LL+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY-EGFTPLHLAAYDGHLEIVEVLLK 134
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ ++ L G+T L L A G+L+ ++L+K+ ++
Sbjct: 27 DDEVRIL---MANGADVNATDWL------GHTPLHLAAKTGHLEIVEVLLKYGADV-NAW 76
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
N + P+HLAA GH + E LL+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLK 101
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ KD G T L L A RG+L+ ++L+K+ ++ ++ + P+HLAA GH + E
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFT-PLHLAAKRGHLEIVEV 131
Query: 202 LLE 204
LL+
Sbjct: 132 LLK 134
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 119 TDDEATDLIDKLAQSTDVDISETL-------SCKDGGGNTVLSLCAIRGNLKASKILVKH 171
TDD + A + ++I E L + D G T L L A G+L+ ++L+KH
Sbjct: 35 TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 172 KHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
+ + P+HLAAL G + E LL+
Sbjct: 95 GAD-VNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ D G T L L A RG+L+ ++L+K+ ++ Q P+HLAA GH + E
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 202 LLE 204
LL+
Sbjct: 132 LLK 134
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 145 KDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
KD G V+ A G L + L++ + ++ I + N+ +LP+HLAA GH E+L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 205 ETPGRVENFYCGGDGGRLLSDLIKAN 230
T V + GD L+ L N
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRN 150
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 134 TDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALF 193
T ++ ++ +D GN L L A G+L+ + LVKH + + ++ LA L+
Sbjct: 88 TLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 194 GHKD 197
G +
Sbjct: 148 GRNE 151
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 145 KDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
KD G V+ A G L + L++ + ++ I + N+ +LP+HLAA GH E+L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 205 ETPGRVENFYCGGDGGRLLSDLIKAN 230
T V + GD L+ L N
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRN 150
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 134 TDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALF 193
T ++ ++ +D GN L L A G+L+ + LVKH + + ++ LA L+
Sbjct: 88 TLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 194 GHKDTFEYLLEETPGRVENF 213
G + + G N
Sbjct: 148 GRNEVVSLMQANGAGGATNL 167
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 143 SCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYL 202
+ KD G T L L A G+ + K+L+ + K ++ + P+HLAA GHK+ + L
Sbjct: 64 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKT-PLHLAAENGHKEVVKLL 122
Query: 203 LEE 205
L +
Sbjct: 123 LSQ 125
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 114 LVDVETDDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKH 173
L++ + + D L DV+ S D G T L L A G+ + K+L+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNAS------DSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 174 ELLIKQTNQNSLPVHLAALFGHKDTFEYLLEE 205
+ K ++ + P+HLAA GHK+ + LL +
Sbjct: 62 DPNAKDSDGKT-PLHLAAENGHKEVVKLLLSQ 92
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 143 SCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTN-QNSLPVHLAALFGHKDTFEY 201
+ KD G T L G+LK ++L++HK L+ T QN P+H AA GH D +
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHK--ALVNTTGYQNDSPLHDAAKNGHVDIVKL 94
Query: 202 LLEETPGR 209
LL R
Sbjct: 95 LLSYGASR 102
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 146 DGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
D G T L + A G+L+ ++L+++ ++ TN + P+HLAA GH + E LL+
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEIVEVLLK 89
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 146 DGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
D G T L L A G+L+ ++L+K+ ++ K + P++LAA +GH + E LL+
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGIT-PLYLAAYWGHLEIVEVLLK 122
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ D G+T L L A G+ + ++L+KH ++ +
Sbjct: 27 DDEVRIL---MANGADVN------AHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
T+ + P+HLAA GH + E LL+
Sbjct: 78 TDGWT-PLHLAADNGHLEIVEVLLK 101
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ +D G T L L A G+L+ ++L+K+ ++ Q P+HLAA GH + E
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 202 LLE 204
LL+
Sbjct: 132 LLK 134
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ D G T L L A G+L+ ++L+K+ ++ +
Sbjct: 27 DDEVRIL---MANGADVN------ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAE 76
Query: 180 TNQNSLPVHLAALFGHKDTFEYLLE 204
N P+HLAA+ GH + E LL+
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLK 101
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 121 DEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQT 180
D DLI+ A DV+ S D G T L A G+ + K+L+ ++ K +
Sbjct: 18 DRVKDLIENGA---DVNAS------DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS 68
Query: 181 NQNSLPVHLAALFGHKDTFEYLL--------EETPGRVENFYCGGDGGRLLSDLIKANLY 232
+ + P+H AA GHK+ + L+ +++ GR Y +G + + L+ +
Sbjct: 69 DGRT-PLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 233 DV---------ALNLLKNH--PEIVHDIDSQ 252
DV L+L + H EIV ++ Q
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ D G+T L L A+ G+L+ ++L+K+ + + N P+HLAA H + E
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPLHLAAWADHLEIVEV 98
Query: 202 LLE 204
LL+
Sbjct: 99 LLK 101
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 145 KDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
+D G + + A G L K+LV+H ++ + SLP+HLA GH +L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDST-GSLPIHLAIREGHSSVVSFLAP 130
Query: 205 ET 206
E+
Sbjct: 131 ES 132
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 145 KDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
+D G + + A G L K+LV+H ++ + SLP+HLA GH +L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDST-GSLPIHLAIREGHSSVVSFLAP 128
Query: 205 ET 206
E+
Sbjct: 129 ES 130
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 18/89 (20%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHEL---- 175
DDE L +A DV+ +D G T L L A+ +L+ ++L+K+ ++
Sbjct: 27 DDEVRIL---MANGADVN------AEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 176 LIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
I +T P+HL A++GH + E LL+
Sbjct: 78 AIGET-----PLHLVAMYGHLEIVEVLLK 101
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 145 KDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
+D G + + A G L K+LV+H ++ + +LP+HLA GH +L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD-GTGALPIHLAVQEGHTAVVSFLAA 128
Query: 205 ET 206
E+
Sbjct: 129 ES 130
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 145 KDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
+D G + + A G L K+LV+H ++ + +LP+HLA GH +L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD-GTGALPIHLAVQEGHTAVVSFLAA 122
Query: 205 ET 206
E+
Sbjct: 123 ES 124
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 138 ISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKD 197
I++ K GG T L + A +G + K+L++ ++++ IK + P+H AA +G ++
Sbjct: 190 INDVRHAKSGG--TALHVAAAKGYTEVLKLLIQARYDVNIKDYD-GWTPLHAAAHWGKEE 246
Query: 198 TFEYLLE 204
L+E
Sbjct: 247 ACRILVE 253
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 22/91 (24%)
Query: 120 DDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179
DDE L +A DV+ KD G T L L G+L+ ++L+K+ ++
Sbjct: 27 DDEVRIL---MANGADVN------AKDEYGLTPLYLATAHGHLEIVEVLLKNGADV---- 73
Query: 180 TNQNSL------PVHLAALFGHKDTFEYLLE 204
N++ P+HLAA GH + E LL+
Sbjct: 74 ---NAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
>pdb|2IM5|A Chain A, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
pdb|2IM5|B Chain B, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
pdb|2IM5|C Chain C, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
pdb|2IM5|D Chain D, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
Length = 394
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 39/172 (22%)
Query: 72 YRMIQMN-DWQSVDGFVQSNTDILKEHNFLGRSLTIFHLIMGLLVDVETDDEATDLIDKL 130
YR I DW+ V+ +S ++++EH + +IF + ++VE D TD++ +
Sbjct: 132 YRFIGAEPDWKQVEEVTRSKGELMREHR---ATFSIFGMRRRFSLEVE--DRVTDILKQY 186
Query: 131 AQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLA 190
A E+L S + + HKH L + T+ +
Sbjct: 187 A-------GESL-------------------FGTSNVHLAHKHGLRVSGTHPHEWIQFHG 220
Query: 191 ALFGHKDTFEYLLEETPGRVENFYCGGDGGRLLSDLIKANLYDVALNLLKNH 242
A++G+K +E+ N Y GD G +L+D +++ N K H
Sbjct: 221 AIYGYKMANYVAMEDWI----NVY-DGDLGTVLTDTYTTDVF--MRNFSKKH 265
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 149 GNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEYLLE 204
G T L + + GN+K K L++H+ ++ K T P+H AA GH D LL+
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLLLK 365
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 86 FVQSNTDILKEHNFLGRSLTIFHLIMGLLVDVETDDEATDLIDKLAQSTDVDISETLSCK 145
+ QSNT + G+ ++G +V +T D++ LAQ DV+I T++
Sbjct: 219 YAQSNTLEIVSGKLTGQ-------VLGEVVSAQTK---ADILLTLAQQYDVEIHNTVAVG 268
Query: 146 DGGGNTVLSLCAIRGNLKASKILVKHKHELLIK 178
DG + V+ A G +K V+ K + ++
Sbjct: 269 DGANDLVMMAAAGLGVAYHAKPKVEAKAQTAVR 301
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 142 LSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQNSLPVHLAALFGHKDTFEY 201
++ KD G T L A G+ + K+L+ ++ K ++ + P+H AA GHK+ +
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT-PLHHAAENGHKEVVKL 121
Query: 202 LLEE 205
L+ +
Sbjct: 122 LISK 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,298,303
Number of Sequences: 62578
Number of extensions: 850798
Number of successful extensions: 2053
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1906
Number of HSP's gapped (non-prelim): 136
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)