Query 005556
Match_columns 691
No_of_seqs 487 out of 4927
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 18:02:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005556.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2065-2069//hhsearch_pdb/005556hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 343.4 24.2 366 65-499 12-387 (437)
2 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 312.3 30.4 369 19-453 13-390 (437)
3 3utm_A Tankyrase-1; tankyrase, 1.0 1 1 287.0 28.6 154 66-239 23-177 (351)
4 3utm_A Tankyrase-1; tankyrase, 1.0 1 1 284.9 19.4 305 100-507 21-331 (351)
5 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 283.7 14.7 256 99-453 90-359 (373)
6 4g8k_A 2-5A-dependent ribonucl 1.0 1 1 282.5 27.7 284 63-453 21-314 (337)
7 1wdy_A 2-5A-dependent ribonucl 1.0 1 1 276.4 28.4 271 66-438 4-284 (285)
8 3d9h_A CDNA FLJ77766, highly s 1.0 1 1 272.9 24.1 241 66-450 14-265 (285)
9 3ljn_A Hypothetical protein; a 1.0 1 1 267.1 18.9 254 65-453 18-302 (364)
10 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 266.4 16.4 255 64-427 91-369 (373)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=343.40 Aligned_cols=366 Identities=15% Similarity=0.073 Sum_probs=240.6
Q ss_pred HHCCHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHCCCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 21219999999909999999998209011100267898865000000110022248889899999986258887866424
Q 005556 65 YRRHLELYRMIQMNDWQSVDGFVQSNTDILKEHNFLGRSLTIFHLIMGLLVDVETDDEATDLIDKLAQSTDVDISETLSC 144 (691)
Q Consensus 65 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~~~l~~Aa~~g~~~~~iv~~Ll~~~~~~~~~~l~~ 144 (691)
..+.|+||.|+..|+.+.|+.|++.+.+. +.. +..|.||||+ |+..| +.+++++|++.+ .+ ++.
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~--~~~~~t~L~~------A~~~g--~~~~v~~Ll~~g---~~--~~~ 75 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQRGASP-NVS--NVKVETPLHM------AARAG--HTEVAKYLLQNK---AK--VNA 75 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCS-CCS--SSCCCCHHHH------HHHHT--CHHHHHHHHHHT---CC--SSC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCC--CCCCCCHHHH------HHHCC--CHHHHHHHHHCC---CC--CCC
T ss_conf 89988899999878999999999869999-988--8899879999------99819--799999999589---99--998
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCC-CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 67999908879997199999999997092111028999-98099999981996799998750999866545699978199
Q 005556 145 KDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQ-NSLPVHLAALFGHKDTFEYLLEETPGRVENFYCGGDGGRLL 223 (691)
Q Consensus 145 ~d~~G~TpLh~Aa~~G~~~ivk~Ll~~~~~l~~~~~n~-G~TpL~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~G~t~L 223 (691)
++..|+||||+|+..|+.+++++|++.++++. ..+. |.||||+|+..|+.+++++|++.+..... .+..|.|||
T Consensus 76 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~g~t~L 150 (437)
T 1n11_A 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPN--LATTAGHTPLHIAAREGHVETVLALLEKEASQAC---MTKKGFTPL 150 (437)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC---CCTTSCCHH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC---CCCCCCCHH
T ss_conf 79999989999998798999999996799988--7799998599999985999999999967998767---799998799
Q ss_pred HHHHHCCCHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998294999999997099975577999-99889987199854568731023443421453111255789999988998
Q 005556 224 SDLIKANLYDVALNLLKNHPEIVHDIDSQ-KMALDSLALKPYAFESGSRLGCLEGFIYKCIPVTKQLSQTNDNPNVAGDT 302 (691)
Q Consensus 224 h~A~~~g~~~iv~~Ll~~~~~l~~~~d~~-~tpLh~Aa~~~~~f~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~ 302 (691)
|.|+..|+.+++++|++++.+... .+.. .||||.|+.. ++..+++.++........
T Consensus 151 ~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~-------~~~~~v~~Ll~~g~~~~~--------------- 207 (437)
T 1n11_A 151 HVAAKYGKVRVAELLLERDAHPNA-AGKNGLTPLHVAVHH-------NNLDIVKLLLPRGGSPHS--------------- 207 (437)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTC-CCSSCCCHHHHHHHT-------TCHHHHHHHGGGTCCSCC---------------
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHC-------CCHHHHHHHHHCCCCCCC---------------
T ss_conf 999976989999999967999877-789998889999981-------999999999847999887---------------
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 8888766688888888-8986421124------78840169999998544889999999999877620210067771899
Q 005556 303 ENGIGTTNGHSKKSIP-YGSTQQITTY------DAKWPCFKAIYAEKLTHMRTVEIVRFICENVIWTNRANRNKLKGALF 375 (691)
Q Consensus 303 ~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh 375 (691)
.+..+.++++.+.... ....+.+... ..........++...++...+++|.. ...+.+..+ ..|.||||
T Consensus 208 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~-~~g~t~L~ 283 (437)
T 1n11_A 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS---KQANGNLGN-KSGLTPLH 283 (437)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT---TTCCTTCCC-TTCCCHHH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH---CCCCCCCCC-CCCCCHHH
T ss_conf 67789988999998698999999997699988879899979999997788999999996---699999879-99997999
Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 99981949999999997782101123699729999996199338898760897665444445899824233101578889
Q 005556 376 TATRLGIPEFVNEFIMAYNYSALLLNSQNHGIFELAVLHRREKVFNLIHGVNSSYFSISLEDKSGNNILHLTGKSEPSRH 455 (691)
Q Consensus 376 ~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~~~~~~ 455 (691)
.|+..|+.++++.|++.+.+ ++.+|..|+||||+|+.+++.+++++|++.| +++|.+|..|+||||+|++.++.++
T Consensus 284 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---ad~n~~~~~g~t~L~~A~~~g~~~i 359 (437)
T 1n11_A 284 LVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQ---ADVNAKTKLGYSPLHQAAQQGHTDI 359 (437)
T ss_dssp HHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHCCHHHH
T ss_conf 99984999999999848756-7887999988999999869499999999669---9999889999889999998781999
Q ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 8863886389988898643207-8011787421699923452587
Q 005556 456 VPGAALKMQRELQWFKLAKNLV-HPQFREAENKLEQTPTEVFTKE 499 (691)
Q Consensus 456 v~~~~l~~~~el~w~~~v~~~~-~~~~~~~~N~~G~Tp~di~~~~ 499 (691)
|+.++ .....+.+|++|+||++++.+.
T Consensus 360 -----------------v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 387 (437)
T 1n11_A 360 -----------------VTLLLKNGASPNEVSSDGTTPLAIAKRL 387 (437)
T ss_dssp -----------------HHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred -----------------HHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf -----------------9999977689988789989899999884
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=312.34 Aligned_cols=369 Identities=13% Similarity=0.076 Sum_probs=263.1
Q ss_pred CCCCCHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHCCCHHHHHHHHHCCHHHHHCCC
Q ss_conf 15312101122357456455204561277877799998897510432121999999990999999999820901110026
Q 005556 19 KGDLTLFWNIQEDDSMSLYGVQEIVYRNKSKIEGGQSSRDPQEHEKYRRHLELYRMIQMNDWQSVDGFVQSNTDILKEHN 98 (691)
Q Consensus 19 ~~~~~~~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~ 98 (691)
.|..++.+++.... ..+.+.++....... ..+..+.++||.|+..|+.+.++.|++.+.+ ++.+
T Consensus 13 ~g~t~L~~Aa~~g~----~~~v~~Ll~~g~~~~----------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~- 76 (437)
T 1n11_A 13 SGLTPLHVASFMGH----LPIVKNLLQRGASPN----------VSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAK- 76 (437)
T ss_dssp --CCHHHHHHHHTC----HHHHHHHHHTTCCSC----------CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCC-
T ss_pred CCCCHHHHHHHCCC----HHHHHHHHHCCCCCC----------CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCC-
T ss_conf 99888999998789----999999998699999----------8888998799999981979999999958999-9987-
Q ss_pred CCCCCCCHHHHCCCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHC
Q ss_conf 78988650000001100222488898999999862588878664246799990887999719999999999709211102
Q 005556 99 FLGRSLTIFHLIMGLLVDVETDDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIK 178 (691)
Q Consensus 99 ~~~~g~T~Lh~~~~l~~Aa~~g~~~~~iv~~Ll~~~~~~~~~~l~~~d~~G~TpLh~Aa~~G~~~ivk~Ll~~~~~l~~~ 178 (691)
+..|.||||+ |+..| +.+++++|++.+ .+ ++..+..|.||||+|+..|+.++++.|++.+.+..
T Consensus 77 -~~~g~t~L~~------A~~~g--~~~~v~~Ll~~g---a~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-- 140 (437)
T 1n11_A 77 -AKDDQTPLHC------AARIG--HTNMVKLLLENN---AN--PNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-- 140 (437)
T ss_dssp -CTTSCCHHHH------HHHHT--CHHHHHHHHHHT---CC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--
T ss_pred -CCCCCCHHHH------HHHCC--CHHHHHHHHHCC---CC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--
T ss_conf -9999989999------99879--899999999679---99--88779999859999998599999999996799876--
Q ss_pred CCCC-CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC-CCHH
Q ss_conf 8999-9809999998199679999875099986654569997819999998294999999997099975577999-9988
Q 005556 179 QTNQ-NSLPVHLAALFGHKDTFEYLLEETPGRVENFYCGGDGGRLLSDLIKANLYDVALNLLKNHPEIVHDIDSQ-KMAL 256 (691)
Q Consensus 179 ~~n~-G~TpL~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~-~tpL 256 (691)
..+. |.||||+|+..|+.+++++|++.+.+... .+..|.||||.|+..++.+++++|++++.+... .+.. .|||
T Consensus 141 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L 216 (437)
T 1n11_A 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA---AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPL 216 (437)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC-CCTTCCCHH
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHH
T ss_conf 7799998799999976989999999967999877---789998889999981999999999847999887-677899889
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC------CC
Q ss_conf 99871998545687310234434214531112557899999889988888766688888888-898642112------47
Q 005556 257 DSLALKPYAFESGSRLGCLEGFIYKCIPVTKQLSQTNDNPNVAGDTENGIGTTNGHSKKSIP-YGSTQQITT------YD 329 (691)
Q Consensus 257 h~Aa~~~~~f~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~ 329 (691)
|+|+.. ++..+++.++.....+.. .+..+.++++.+.... ....+.+.. ..
T Consensus 217 ~~A~~~-------~~~~~~~~Ll~~g~~~~~---------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 274 (437)
T 1n11_A 217 HIAAKQ-------NQVEVARSLLQYGGSANA---------------ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274 (437)
T ss_dssp HHHHHT-------TCHHHHHHHHHTTCCTTC---------------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred HHHHHC-------CCHHHHHHHHHCCCCCCC---------------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 999986-------989999999976999888---------------7989997999999778899999999669999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 88401699999985448899999999998776202100677718999998194999999999778210112369972999
Q 005556 330 AKWPCFKAIYAEKLTHMRTVEIVRFICENVIWTNRANRNKLKGALFTATRLGIPEFVNEFIMAYNYSALLLNSQNHGIFE 409 (691)
Q Consensus 330 ~~~~~~~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~Lh 409 (691)
.........++...++...+++|.. ...+++..+ ..|.||||+|+..|+.++|++|++.+.+. +.+|..|+||||
T Consensus 275 ~~~g~t~L~~A~~~~~~~~~~~Ll~---~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~L~ 349 (437)
T 1n11_A 275 NKSGLTPLHLVAQEGHVPVADVLIK---HGVMVDATT-RMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLH 349 (437)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHH---HTCCTTCCC-SSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHH---CCCCCCCCC-CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
T ss_conf 9999979999998499999999984---875678879-99988999999869499999999669999-988999988999
Q ss_pred HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 99961993388987608976654444458998242331015788
Q 005556 410 LAVLHRREKVFNLIHGVNSSYFSISLEDKSGNNILHLTGKSEPS 453 (691)
Q Consensus 410 ~Av~~~~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~~~~ 453 (691)
+|+.+++.+++++|++.| ++++.+|.+|+||||+|++.|+.
T Consensus 350 ~A~~~g~~~iv~~Ll~~g---a~~~~~~~~g~t~l~~A~~~g~~ 390 (437)
T 1n11_A 350 QAAQQGHTDIVTLLLKNG---ASPNEVSSDGTTPLAIAKRLGYI 390 (437)
T ss_dssp HHHHTTCHHHHHHHHHTT---CCSCCCCSSSCCHHHHHHHTTCH
T ss_pred HHHHCCHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHCCCH
T ss_conf 999878199999999776---89988789989899999884958
No 3
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=287.05 Aligned_cols=154 Identities=17% Similarity=0.161 Sum_probs=127.0
Q ss_pred HCCHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHCCCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 12199999999099999999982090111002678988650000001100222488898999999862588878664246
Q 005556 66 RRHLELYRMIQMNDWQSVDGFVQSNTDILKEHNFLGRSLTIFHLIMGLLVDVETDDEATDLIDKLAQSTDVDISETLSCK 145 (691)
Q Consensus 66 ~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~~~l~~Aa~~g~~~~~iv~~Ll~~~~~~~~~~l~~~ 145 (691)
.+.++|+.|+..|+.+.++.++...+..++.+ +..|.||||+ |+..| +.++++.|++.+ .+ ++.+
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--d~~g~t~L~~------A~~~g--~~~~v~~Ll~~g---~~--~~~~ 87 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHAS--DGRKSTPLHL------AAGYN--RVRIVQLLLQHG---AD--VHAK 87 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS--STTCCCHHHH------HHHTT--CHHHHHHHHHTT---CC--TTCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCC--CCCCCCHHHH------HHHCC--CHHHHHHHHHCC---CC--CCCC
T ss_conf 24005999998399899999998648886557--9999889999------99859--999999999769---99--9761
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCC-CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 7999908879997199999999997092111028999-980999999819967999987509998665456999781999
Q 005556 146 DGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQ-NSLPVHLAALFGHKDTFEYLLEETPGRVENFYCGGDGGRLLS 224 (691)
Q Consensus 146 d~~G~TpLh~Aa~~G~~~ivk~Ll~~~~~l~~~~~n~-G~TpL~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~G~t~Lh 224 (691)
|..|.||||+|+..|+.+++++|++.++++. ..+. |.||||+|+..|+.+++++|++.+.+... .+..|.++++
T Consensus 88 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~~g~~~l~ 162 (351)
T 3utm_A 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVN--AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL---VNCHGKSAVD 162 (351)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC---CCCCCCCCHH
T ss_conf 7999808999997788999999997799999--7788899899999974999999999976999863---3678986237
Q ss_pred HHHHCCCHHHHHHHH
Q ss_conf 999829499999999
Q 005556 225 DLIKANLYDVALNLL 239 (691)
Q Consensus 225 ~A~~~g~~~iv~~Ll 239 (691)
.|+..+..+......
T Consensus 163 ~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 163 MAPTPELRERLTYEF 177 (351)
T ss_dssp HCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 775332589998640
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=284.92 Aligned_cols=305 Identities=14% Similarity=0.069 Sum_probs=233.3
Q ss_pred CCCCCCHHHHCCCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHCC
Q ss_conf 89886500000011002224888989999998625888786642467999908879997199999999997092111028
Q 005556 100 LGRSLTIFHLIMGLLVDVETDDEATDLIDKLAQSTDVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQ 179 (691)
Q Consensus 100 ~~~g~T~Lh~~~~l~~Aa~~g~~~~~iv~~Ll~~~~~~~~~~l~~~d~~G~TpLh~Aa~~G~~~ivk~Ll~~~~~l~~~~ 179 (691)
+..+.|+||. |+..| +.+.++.|+... +.+ ++.+|..|.||||+|+..|+.+++++|++.++++. .
T Consensus 21 ~~~~~~~L~~------A~~~g--~~~~v~~ll~~~---~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~ 86 (351)
T 3utm_A 21 GEYKKDELLE------AARSG--NEEKLMALLTPL---NVN-CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH--A 86 (351)
T ss_dssp HHHHHHHHHH------HHHHT--CHHHHHHHCCTT---TTT-CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--C
T ss_pred CCCCCHHHHH------HHHCC--CHHHHHHHHHHC---CCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--C
T ss_conf 3324005999------99839--989999999864---888-65579999889999998599999999997699997--6
Q ss_pred CCC-CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC-CCHHH
Q ss_conf 999-9809999998199679999875099986654569997819999998294999999997099975577999-99889
Q 005556 180 TNQ-NSLPVHLAALFGHKDTFEYLLEETPGRVENFYCGGDGGRLLSDLIKANLYDVALNLLKNHPEIVHDIDSQ-KMALD 257 (691)
Q Consensus 180 ~n~-G~TpL~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~-~tpLh 257 (691)
++. |.||||+|+..|+.+++++|++.+.+... .+..|.||||+|+..++.+++++|++++.+.... +.. .+|++
T Consensus 87 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~~~l~ 162 (351)
T 3utm_A 87 KDKGGLVPLHNACSYGHYEVTELLLKHGACVNA---MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVD 162 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCCHH
T ss_conf 179998089999977889999999977999997---7888998999999749999999999769998633-678986237
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 98719985456873102344342145311125578999998899888887666888888888986421124788401699
Q 005556 258 SLALKPYAFESGSRLGCLEGFIYKCIPVTKQLSQTNDNPNVAGDTENGIGTTNGHSKKSIPYGSTQQITTYDAKWPCFKA 337 (691)
Q Consensus 258 ~Aa~~~~~f~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (691)
.++..+ ....+..... +...
T Consensus 163 ~a~~~~-------~~~~~~~~~~-----------------------------------------------------~~~~ 182 (351)
T 3utm_A 163 MAPTPE-------LRERLTYEFK-----------------------------------------------------GHSL 182 (351)
T ss_dssp HCSSHH-------HHHHHHHHHH-----------------------------------------------------HHHH
T ss_pred HHHHHH-------HHHHHHHHHC-----------------------------------------------------CCHH
T ss_conf 775332-------5899986404-----------------------------------------------------2179
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC---CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 9999854488999999999987762021006777189999981---9499999999977821011236997299999961
Q 005556 338 IYAEKLTHMRTVEIVRFICENVIWTNRANRNKLKGALFTATRL---GIPEFVNEFIMAYNYSALLLNSQNHGIFELAVLH 414 (691)
Q Consensus 338 i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~---G~~eiv~~Ll~~~~~~~~~~d~~G~t~Lh~Av~~ 414 (691)
..+...++...+..+ .... ..+......|.||||.|+.. +..++++.|++.+.+ ++.+|..|+||||+|+.+
T Consensus 183 ~~~~~~~~~~~~~~~---l~~~-~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 257 (351)
T 3utm_A 183 LQAAREADLAKVKKT---LALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAER 257 (351)
T ss_dssp HHHHHTTCHHHHHHH---TTTC-CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHCCHHHHHHH---HHHH-CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHC
T ss_conf 999983249999999---9700-01335788899889999997175589999999975999-677699999899999985
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHCCCCCH
Q ss_conf 993388987608976654444458998242331015788898863886389988898643207-8011787421699923
Q 005556 415 RREKVFNLIHGVNSSYFSISLEDKSGNNILHLTGKSEPSRHVPGAALKMQRELQWFKLAKNLV-HPQFREAENKLEQTPT 493 (691)
Q Consensus 415 ~~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~~~~~~v~~~~l~~~~el~w~~~v~~~~-~~~~~~~~N~~G~Tp~ 493 (691)
++.+++++|++.| +++|.+|..|+||||+|+..++.+. ++.++ .....+.+|++|+||.
T Consensus 258 g~~~~v~~Ll~~g---a~~n~~d~~g~t~L~~A~~~~~~~~-----------------v~~Ll~~gad~~~~~~~g~tal 317 (351)
T 3utm_A 258 AHNDVMEVLHKHG---AKMNALDSLGQTALHRAALAGHLQT-----------------CRLLLSYGSDPSIISLQGFTAA 317 (351)
T ss_dssp TCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHH-----------------HHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHCCCHHH-----------------HHHHHHCCCCCCCCCCCCCCHH
T ss_conf 9898999999879---9987759999988999998285999-----------------9999984999888688998836
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 45258779989976
Q 005556 494 EVFTKEHKELAKEG 507 (691)
Q Consensus 494 di~~~~~~~l~~~~ 507 (691)
+++.+...+++.+.
T Consensus 318 ~~a~~~~~~~l~~~ 331 (351)
T 3utm_A 318 QMGNEAVQQILSES 331 (351)
T ss_dssp HHSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC
T ss_conf 56369999998760
No 5
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=283.70 Aligned_cols=256 Identities=14% Similarity=0.114 Sum_probs=202.0
Q ss_pred CCCCCCCHHHHCCCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC-CCCCHHHHHHHHCCCHHHHHHHH--------
Q ss_conf 789886500000011002224888989999998625888786642467-99990887999719999999999--------
Q 005556 99 FLGRSLTIFHLIMGLLVDVETDDEATDLIDKLAQSTDVDISETLSCKD-GGGNTVLSLCAIRGNLKASKILV-------- 169 (691)
Q Consensus 99 ~~~~g~T~Lh~~~~l~~Aa~~g~~~~~iv~~Ll~~~~~~~~~~l~~~d-~~G~TpLh~Aa~~G~~~ivk~Ll-------- 169 (691)
.+..|.||||+ |+..+ + ++++.|++.. ++..| ..|+||||+||..|+.++++.|+
T Consensus 90 ~~~~g~t~L~~------Aa~~~--~-~~~~~L~~~~-------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll 153 (373)
T 2fo1_E 90 PEPESPIKLHT------EAAGS--Y-AITEPITRES-------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 153 (373)
T ss_dssp ----CCCHHHH------HHHSS--S-CCCSCCSTTT-------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHH
T ss_pred CCCCCCCHHHH------HHCCC--C-HHHHHHCCCC-------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 89998657999------86387--1-6888750023-------4335776798889999877987789999999999998
Q ss_pred HCCCHHHHCCCCC-CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHC---CCC
Q ss_conf 7092111028999-980999999819967999987509998665456999781999999829499999999709---997
Q 005556 170 KHKHELLIKQTNQ-NSLPVHLAALFGHKDTFEYLLEETPGRVENFYCGGDGGRLLSDLIKANLYDVALNLLKNH---PEI 245 (691)
Q Consensus 170 ~~~~~l~~~~~n~-G~TpL~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~G~t~Lh~A~~~g~~~iv~~Ll~~~---~~l 245 (691)
+.+.++. .+|. |.||||+|+..|+.+++++|++.+.+... .+..|.||||+|+..|+.++++.|++.+ .++
T Consensus 154 ~~ga~vn--~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 228 (373)
T 2fo1_E 154 AAGADVN--AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI---YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228 (373)
T ss_dssp HTCCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC---CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred HCCCCCC--CCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCH
T ss_conf 6599876--7789998989999986949999999977999761---5898987999998779988999998457655673
Q ss_pred CCCCCCC-CCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5577999-998899871998545687310234434214531112557899999889988888766688888888898642
Q 005556 246 VHDIDSQ-KMALDSLALKPYAFESGSRLGCLEGFIYKCIPVTKQLSQTNDNPNVAGDTENGIGTTNGHSKKSIPYGSTQQ 324 (691)
Q Consensus 246 ~~~~d~~-~tpLh~Aa~~~~~f~s~~~l~~~~~li~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (691)
.. .+.. .||||+|+..+. .....+++.++.....+.....
T Consensus 229 ~~-~d~~g~t~L~~A~~~~~----~~~~~~v~~Ll~~g~~~~~~~~---------------------------------- 269 (373)
T 2fo1_E 229 EE-LDRNGMTALMIVAHNEG----RDQVASAKLLVEKGAKVDYDGA---------------------------------- 269 (373)
T ss_dssp SC-CCTTSCCHHHHHHHSCS----TTHHHHHHHHHHHTCCSSCCSG----------------------------------
T ss_pred HH-CCCCCCCHHHHHHHHCC----CCHHHHHHHHHHCCCCCCCCCC----------------------------------
T ss_conf 22-37789979999998378----3449999999977997655554----------------------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 11247884016999999854488999999999987762021006777189999981949999999997782101123699
Q 005556 325 ITTYDAKWPCFKAIYAEKLTHMRTVEIVRFICENVIWTNRANRNKLKGALFTATRLGIPEFVNEFIMAYNYSALLLNSQN 404 (691)
Q Consensus 325 ~~~~~~~~~~~~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G 404 (691)
...+..+ ..|.||||+|+..|+.++|+.|++.++..++.+|..|
T Consensus 270 -----------------------------------~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g 313 (373)
T 2fo1_E 270 -----------------------------------ARKDSEK-YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG 313 (373)
T ss_dssp -----------------------------------GGTSSSS-CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred -----------------------------------CCCCCCC-CCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf -----------------------------------4457555-4588899999980999999999973689866769899
Q ss_pred CCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 7299999961993388987608976654444458998242331015788
Q 005556 405 HGIFELAVLHRREKVFNLIHGVNSSYFSISLEDKSGNNILHLTGKSEPS 453 (691)
Q Consensus 405 ~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~~~~ 453 (691)
+||||+|+.+|+.+++++|++.| ++++.+|..|+||||+|+..++.
T Consensus 314 ~TpL~~A~~~g~~~iv~~Ll~~g---ad~~~~d~~g~t~l~~A~~~g~~ 359 (373)
T 2fo1_E 314 KTPIMLAAQEGRIEVVMYLIQQG---ASVEAVDATDHTARQLAQANNHH 359 (373)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTT---CCSSCCCSSSCCHHHHHHHTTCH
T ss_pred CCHHHHHHHCCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHCCCH
T ss_conf 98999999868999999999769---98547798999999999985988
No 6
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=1.00 E-value=1 Score=282.53 Aligned_cols=284 Identities=15% Similarity=0.144 Sum_probs=231.1
Q ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHCCCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 43212199999999099999999982090111002678988650000001100222488898999999862588878664
Q 005556 63 EKYRRHLELYRMIQMNDWQSVDGFVQSNTDILKEHNFLGRSLTIFHLIMGLLVDVETDDEATDLIDKLAQSTDVDISETL 142 (691)
Q Consensus 63 ~~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~~~l~~Aa~~g~~~~~iv~~Ll~~~~~~~~~~l 142 (691)
....+.++|+.|+..|+.+.|+.|++.+.+. +.+ -+..|.||||+ |+..| +.++|+.|+++| .. +
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadv-n~~-~~~~g~TpLh~------A~~~g--~~~iv~~Ll~~g---a~--~ 85 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANV-NFQ-EEEGGWTPLHN------AVQMS--REDIVELLLRHG---AD--P 85 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCT-TCC-CTTTCCCHHHH------HHHTT--CHHHHHHHHHTT---CC--T
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC-CCC-CCCCCCCHHHH------HHHCC--CHHHHHHHHHCC---CC--H
T ss_conf 7888984999999848999999999879997-834-89899699999------99849--899999998759---95--3
Q ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCC-CCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-------CC
Q ss_conf 2467999908879997199999999997092111028999-980999999819967999987509998665-------45
Q 005556 143 SCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQ-NSLPVHLAALFGHKDTFEYLLEETPGRVEN-------FY 214 (691)
Q Consensus 143 ~~~d~~G~TpLh~Aa~~G~~~ivk~Ll~~~~~l~~~~~n~-G~TpL~~Aa~~g~~~iv~~Ll~~~~~~~~~-------~~ 214 (691)
+.++..+.++++.++..++..+++.+++.+.++. ..+. |.||||+|+..|+.+++++|++.+.+.... ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~ 163 (337)
T 4g8k_A 86 VLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN--ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER 163 (337)
T ss_dssp TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----
T ss_pred HHHCCCCCCHHHHHHHCCCCHHHHHHHHCCCHHH--HHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHCCCCCCCC
T ss_conf 3321578864677775054135677631020055--53037998799998718699999999759983433301322000
Q ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHH-CCCCCCCCCCC-CCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 699978199999982949999999970-99975577999-9988998719985456873102344342145311125578
Q 005556 215 CGGDGGRLLSDLIKANLYDVALNLLKN-HPEIVHDIDSQ-KMALDSLALKPYAFESGSRLGCLEGFIYKCIPVTKQLSQT 292 (691)
Q Consensus 215 ~~~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~l~~~~d~~-~tpLh~Aa~~~~~f~s~~~l~~~~~li~~~~~v~~~~~~~ 292 (691)
.+..|.||||+|+..|+.++++.|+++ +.++.. .+.. .||++.++..+.. +.
T Consensus 164 ~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~-~d~~g~t~l~~~~~~~~~---~~---------------------- 217 (337)
T 4g8k_A 164 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNA-CDNMGRNALIHALLSSDD---SD---------------------- 217 (337)
T ss_dssp CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC-CCTTSCCHHHHHHHHSCT---TT----------------------
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHCCC---CC----------------------
T ss_conf 3678976999999877899999998634989676-578897278999997375---66----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999889988888766688888888898642112478840169999998544889999999999877620210067771
Q 005556 293 NDNPNVAGDTENGIGTTNGHSKKSIPYGSTQQITTYDAKWPCFKAIYAEKLTHMRTVEIVRFICENVIWTNRANRNKLKG 372 (691)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~t 372 (691)
.. .+++.+.+...+++..+ ..|.|
T Consensus 218 ----------------------------------------------------~~---~i~~lLl~~gad~n~~d-~~g~t 241 (337)
T 4g8k_A 218 ----------------------------------------------------VE---AITHLLLDHGADVNVRG-ERGKT 241 (337)
T ss_dssp ----------------------------------------------------HH---HHHHHHHHTTCCTTCCC-GGGCC
T ss_pred ----------------------------------------------------HH---HHHHHHHHCCCCCCCCC-CCCCC
T ss_conf ----------------------------------------------------89---99999997799988768-99998
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 89999981949999999997782101123699729999996199338898760897665444445899824233101578
Q 005556 373 ALFTATRLGIPEFVNEFIMAYNYSALLLNSQNHGIFELAVLHRREKVFNLIHGVNSSYFSISLEDKSGNNILHLTGKSEP 452 (691)
Q Consensus 373 pLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~~~ 452 (691)
|||.|+..|+.++++.|++..+..++.+|..|+||||+|+++|+.+++++|++.| +++|.+ ||||+|++.++
T Consensus 242 ~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G---Ad~n~~-----~~L~~A~~~~~ 313 (337)
T 4g8k_A 242 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---ASTDCG-----DLVMTARRNYD 313 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS---CSSTTC-----CHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC---CCCCCC-----CHHHHHHHCCC
T ss_conf 7899998512589999987348756676899999999999868799999999878---999987-----89999998699
Q ss_pred C
Q ss_conf 8
Q 005556 453 S 453 (691)
Q Consensus 453 ~ 453 (691)
.
T Consensus 314 ~ 314 (337)
T 4g8k_A 314 H 314 (337)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=276.37 Aligned_cols=271 Identities=16% Similarity=0.138 Sum_probs=220.8
Q ss_pred HCCHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHCCCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 12199999999099999999982090111002678988650000001100222488898999999862588878664246
Q 005556 66 RRHLELYRMIQMNDWQSVDGFVQSNTDILKEHNFLGRSLTIFHLIMGLLVDVETDDEATDLIDKLAQSTDVDISETLSCK 145 (691)
Q Consensus 66 ~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~~~l~~Aa~~g~~~~~iv~~Ll~~~~~~~~~~l~~~ 145 (691)
.+.++|+.|+..|+.+.++.+++.+++.. .. .+..|.||||+ |+..| +.+++++|++.+ .+ ++.+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~-~~~~g~t~L~~------A~~~g--~~~~v~~Ll~~g---~~--~~~~ 68 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVN-FQ-EEEGGWTPLHN------AVQMS--REDIVELLLRHG---AD--PVLR 68 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTT-CC-CTTTCCCHHHH------HHHTT--CHHHHHHHHHTT---CC--TTCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCC-CC-CCCCCCCHHHH------HHHCC--CHHHHHHHHHCC---CC--CCCC
T ss_conf 54439999997189999999998699843-20-38999869999------99769--799999999769---99--7545
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCC-CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-------CCC
Q ss_conf 7999908879997199999999997092111028999-98099999981996799998750999866545-------699
Q 005556 146 DGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQ-NSLPVHLAALFGHKDTFEYLLEETPGRVENFY-------CGG 217 (691)
Q Consensus 146 d~~G~TpLh~Aa~~G~~~ivk~Ll~~~~~l~~~~~n~-G~TpL~~Aa~~g~~~iv~~Ll~~~~~~~~~~~-------~~~ 217 (691)
|..|.||||+|+..|+.+++++|++.++++. ..+. |.||||+|+..|+.+++++|++.+.+...... .+.
T Consensus 69 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~ 146 (285)
T 1wdy_A 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVN--ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146 (285)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTC
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCC
T ss_conf 8789989999997499999999997599987--65845688999999909889999999848994411044788886602
Q ss_pred CCCCHHHHHHHCCCHHHHHHHHHH-CCCCCCCCCCC-CCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 978199999982949999999970-99975577999-9988998719985456873102344342145311125578999
Q 005556 218 DGGRLLSDLIKANLYDVALNLLKN-HPEIVHDIDSQ-KMALDSLALKPYAFESGSRLGCLEGFIYKCIPVTKQLSQTNDN 295 (691)
Q Consensus 218 ~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~l~~~~d~~-~tpLh~Aa~~~~~f~s~~~l~~~~~li~~~~~v~~~~~~~~~~ 295 (691)
.|.||||.|+..++.++++.|++. +.+... .+.. .||||.|+..+.. .....+++
T Consensus 147 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~l~~a~~~~~~---~~~~~i~~------------------- 203 (285)
T 1wdy_A 147 GGATALMDAAEKGHVEVLKILLDEMGADVNA-CDNMGRNALIHALLSSDD---SDVEAITH------------------- 203 (285)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTC-CCTTSCCHHHHHHHCSCT---TTHHHHHH-------------------
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCCC---CHHHHHHH-------------------
T ss_conf 7986999999839899999999966999875-488999878999981562---33899999-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99889988888766688888888898642112478840169999998544889999999999877620210067771899
Q 005556 296 PNVAGDTENGIGTTNGHSKKSIPYGSTQQITTYDAKWPCFKAIYAEKLTHMRTVEIVRFICENVIWTNRANRNKLKGALF 375 (691)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh 375 (691)
.+.+...+++..+ ..|.||||
T Consensus 204 ----------------------------------------------------------~Ll~~g~~~~~~~-~~g~t~L~ 224 (285)
T 1wdy_A 204 ----------------------------------------------------------LLLDHGADVNVRG-ERGKTPLI 224 (285)
T ss_dssp ----------------------------------------------------------HHHHTTCCSSCCC-TTSCCHHH
T ss_pred ----------------------------------------------------------HHHHCCCCCCCCC-CCCCCHHH
T ss_conf ----------------------------------------------------------9997699998868-77986899
Q ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999819499999999977821011236997299999961993388987608976654444458
Q 005556 376 TATRLGIPEFVNEFIMAYNYSALLLNSQNHGIFELAVLHRREKVFNLIHGVNSSYFSISLEDK 438 (691)
Q Consensus 376 ~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~D~ 438 (691)
+|+..|+.++++.|++..+..++.+|..|+||||+|+++++.+++++|++.| ++++.+|.
T Consensus 225 ~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G---a~~~~~d~ 284 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---ASTDCGDL 284 (285)
T ss_dssp HHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS---SCSCCSSC
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC---CCCCCCCC
T ss_conf 9998299999999996369985450899983999999839499999999759---99985556
No 8
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=272.86 Aligned_cols=241 Identities=13% Similarity=0.074 Sum_probs=205.7
Q ss_pred HCCHHHHHHHHCCCHHHHHHHHHCCHH----------HHHCCCCCCCCCCHHHHCCCCCCHHCCCCCCHHHHHHHHHCCC
Q ss_conf 121999999990999999999820901----------1100267898865000000110022248889899999986258
Q 005556 66 RRHLELYRMIQMNDWQSVDGFVQSNTD----------ILKEHNFLGRSLTIFHLIMGLLVDVETDDEATDLIDKLAQSTD 135 (691)
Q Consensus 66 ~~~~~L~~A~~~G~~~~v~~ll~~~~~----------~~~~~~~~~~g~T~Lh~~~~l~~Aa~~g~~~~~iv~~Ll~~~~ 135 (691)
...++||.|+..|+.+.+..++...+. .... .+..|.||||+ |+..| +.++++.|++.+
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~------Aa~~g--~~~~v~~Ll~~g- 82 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMG--DAVSDWSPMHE------AAIHG--HQLSLRNLISQG- 82 (285)
T ss_dssp ----------------------------CCSEECCCCTTCS--SSCCSCCHHHH------HHHTT--CHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC--CCCCCCCHHHH------HHHCC--CHHHHHHHHHCC-
T ss_conf 88898889963177777566777764445323444174458--87567888999------99868--999999999779-
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCC-CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 88786642467999908879997199999999997092111028999-98099999981996799998750999866545
Q 005556 136 VDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQ-NSLPVHLAALFGHKDTFEYLLEETPGRVENFY 214 (691)
Q Consensus 136 ~~~~~~l~~~d~~G~TpLh~Aa~~G~~~ivk~Ll~~~~~l~~~~~n~-G~TpL~~Aa~~g~~~iv~~Ll~~~~~~~~~~~ 214 (691)
.+ ++.+|..|.||||+|+..|+.+++++|++.+.++. .++. |.||||+|+..|+.+++++|++.+.+..
T Consensus 83 --~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---- 152 (285)
T 3d9h_A 83 --WA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN--GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ---- 152 (285)
T ss_dssp --CC--SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS----
T ss_pred --CC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCC----
T ss_conf --99--98728899889999998874999999997789988--878999989999998698999999997799988----
Q ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 69997819999998294999999997099975577999998899871998545687310234434214531112557899
Q 005556 215 CGGDGGRLLSDLIKANLYDVALNLLKNHPEIVHDIDSQKMALDSLALKPYAFESGSRLGCLEGFIYKCIPVTKQLSQTND 294 (691)
Q Consensus 215 ~~~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~~tpLh~Aa~~~~~f~s~~~l~~~~~li~~~~~v~~~~~~~~~ 294 (691)
.+.+|.||||+|+..|+.++++.|++.+.++... |
T Consensus 153 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d-------------------------------------------- 187 (285)
T 3d9h_A 153 PESDLASPIHEAARRGHVECVNSLIAYGGNIDHK-I-------------------------------------------- 187 (285)
T ss_dssp CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCC-B--------------------------------------------
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-C--------------------------------------------
T ss_conf 7889978999999868899999999779998875-7--------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99988998888876668888888889864211247884016999999854488999999999987762021006777189
Q 005556 295 NPNVAGDTENGIGTTNGHSKKSIPYGSTQQITTYDAKWPCFKAIYAEKLTHMRTVEIVRFICENVIWTNRANRNKLKGAL 374 (691)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpL 374 (691)
..|.|||
T Consensus 188 -------------------------------------------------------------------------~~g~t~L 194 (285)
T 3d9h_A 188 -------------------------------------------------------------------------SHLGTPL 194 (285)
T ss_dssp -------------------------------------------------------------------------TTTBCHH
T ss_pred -------------------------------------------------------------------------CCCCCHH
T ss_conf -------------------------------------------------------------------------8899889
Q ss_pred HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 9999819499999999977821011236997299999961993388987608976654444458998242331015
Q 005556 375 FTATRLGIPEFVNEFIMAYNYSALLLNSQNHGIFELAVLHRREKVFNLIHGVNSSYFSISLEDKSGNNILHLTGKS 450 (691)
Q Consensus 375 h~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~~n~~D~~G~TpLHlAa~~ 450 (691)
|+|+..|+.++++.|++.+.+.. .|..|+||||+|+.+++.+++++|++.| ++++.+|.+|+||||+|+..
T Consensus 195 ~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 195 YLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFG---ADTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCGGGGSCTT
T ss_pred HHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHCCC
T ss_conf 99998390999999998789988--7989998999998809999999999779---99877588999899982575
No 9
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=267.11 Aligned_cols=254 Identities=10% Similarity=-0.016 Sum_probs=198.4
Q ss_pred HHCCHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHCCCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 21219999999909999999998209011100267898865000000110022248889899999986258887866424
Q 005556 65 YRRHLELYRMIQMNDWQSVDGFVQSNTDILKEHNFLGRSLTIFHLIMGLLVDVETDDEATDLIDKLAQSTDVDISETLSC 144 (691)
Q Consensus 65 ~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~~~g~T~Lh~~~~l~~Aa~~g~~~~~iv~~Ll~~~~~~~~~~l~~ 144 (691)
..+.++||.|+..|+.+.++.|++.+.+ ++.. +..|.||||+ |+..| +.+++++|++.+ .. .
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~--d~~g~t~L~~------A~~~g--~~~~v~~Ll~~g---~~----~ 79 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETGVS-PTIQ--NRFGCTALHL------ACKFG--CVDTAKYLASVG---EV----H 79 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCC--CTTCCCHHHH------HHHHC--CHHHHHHHHHHC---CC----C
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCC--CCCCCCHHHH------HHHCC--CHHHHHHHHHCC---CC----C
T ss_conf 8999799999980999999999986989-4224--8999969999------99859--899999999779---97----5
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHC----CCHHH---------------HCCCCC-CCCHHHHHHHCC--CHHHHHHH
Q ss_conf 679999088799971999999999970----92111---------------028999-980999999819--96799998
Q 005556 145 KDGGGNTVLSLCAIRGNLKASKILVKH----KHELL---------------IKQTNQ-NSLPVHLAALFG--HKDTFEYL 202 (691)
Q Consensus 145 ~d~~G~TpLh~Aa~~G~~~ivk~Ll~~----~~~l~---------------~~~~n~-G~TpL~~Aa~~g--~~~iv~~L 202 (691)
.+..|.||||+|+..|+.+++++|++. +.+.. +...+. |.||||+|+..| +.+++++|
T Consensus 80 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~L 159 (364)
T 3ljn_A 80 SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL 159 (364)
T ss_dssp CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHH
T ss_conf 45689988999988699889999997133358777889863026766540356679889878999997499669999999
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 75099986654569997819999998294999999997099975577999998899871998545687310234434214
Q 005556 203 LEETPGRVENFYCGGDGGRLLSDLIKANLYDVALNLLKNHPEIVHDIDSQKMALDSLALKPYAFESGSRLGCLEGFIYKC 282 (691)
Q Consensus 203 l~~~~~~~~~~~~~~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~l~~~~d~~~tpLh~Aa~~~~~f~s~~~l~~~~~li~~~ 282 (691)
++.+.+.+. .+..|.||||+|+..|+.+++++|++++++.... +-+
T Consensus 160 l~~ga~~~~---~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~------------------------------ 205 (364)
T 3ljn_A 160 VQLGASPTA---KDKADETPLMRAMEFRNREALDLMMDTVPSKSSL-RLD------------------------------ 205 (364)
T ss_dssp HHHTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSC-CTT------------------------------
T ss_pred HHCCCCCCC---CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCC------------------------------
T ss_conf 976999736---2889998999999829899999998605541235-552------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53111255789999988998888876668888888889864211247884016999999854488999999999987762
Q 005556 283 IPVTKQLSQTNDNPNVAGDTENGIGTTNGHSKKSIPYGSTQQITTYDAKWPCFKAIYAEKLTHMRTVEIVRFICENVIWT 362 (691)
Q Consensus 283 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~lL~~l~~~~~~~ 362 (691)
T Consensus 206 -------------------------------------------------------------------------------- 205 (364)
T 3ljn_A 206 -------------------------------------------------------------------------------- 205 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCC---------CCCC
Q ss_conf 0210067771899999819499999999977821011236997299999961993388987608976---------6544
Q 005556 363 NRANRNKLKGALFTATRLGIPEFVNEFIMAYNYSALLLNSQNHGIFELAVLHRREKVFNLIHGVNSS---------YFSI 433 (691)
Q Consensus 363 ~~~~~~~g~tpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~Lh~Av~~~~~~iv~~Ll~~~~~---------~~~~ 433 (691)
..+ ..|.||||+|+..|+.++|+.|++.+.+. +.+|..|+||||+|+.+++.+++++|++.+.. ....
T Consensus 206 -~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 282 (364)
T 3ljn_A 206 -YAN-KQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTT 282 (364)
T ss_dssp -CCC-TTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSS
T ss_pred -CCC-CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHCCCCCCCCC
T ss_conf -328-89980999999759889999999869998-887999998899999838299999999748805541575667642
Q ss_pred CCCCCCCCCHHHHHHCCCCC
Q ss_conf 44458998242331015788
Q 005556 434 SLEDKSGNNILHLTGKSEPS 453 (691)
Q Consensus 434 n~~D~~G~TpLHlAa~~~~~ 453 (691)
...+..|.|||+.|+..++.
T Consensus 283 ~~~~~~~~~~l~~aa~~~~~ 302 (364)
T 3ljn_A 283 VLPDRVVWLDFVPAAADPSK 302 (364)
T ss_dssp BCGGGCCCCTTSCSSCCHHH
T ss_pred CCCCCCCCCCCHHHHHCCCH
T ss_conf 35654320001243221687
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=266.37 Aligned_cols=255 Identities=13% Similarity=0.089 Sum_probs=181.4
Q ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCCC-CCCCCHHHHCCCCCCHHCCCCCCHHHHHHHH--------HCC
Q ss_conf 3212199999999099999999982090111002678-9886500000011002224888989999998--------625
Q 005556 64 KYRRHLELYRMIQMNDWQSVDGFVQSNTDILKEHNFL-GRSLTIFHLIMGLLVDVETDDEATDLIDKLA--------QST 134 (691)
Q Consensus 64 ~~~~~~~L~~A~~~G~~~~v~~ll~~~~~~~~~~~~~-~~g~T~Lh~~~~l~~Aa~~g~~~~~iv~~Ll--------~~~ 134 (691)
+..+.++||.|+..|+ +.++.++..+ ++.. + ..|.||||+ |+..| +.++++.|+ +.+
T Consensus 91 ~~~g~t~L~~Aa~~~~-~~~~~L~~~~---~n~~--d~~~g~t~Lh~------Aa~~g--~~~~v~~Ll~~~~~~ll~~g 156 (373)
T 2fo1_E 91 EPESPIKLHTEAAGSY-AITEPITRES---VNII--DPRHNRTVLHW------IASNS--SAEKSEDLIVHEAKECIAAG 156 (373)
T ss_dssp ---CCCHHHHHHHSSS-CCCSCCSTTT---TTTC--CCSSCCCHHHH------HHCTT--CCSCCTTHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHCCCC-HHHHHHCCCC---CCCC--CCCCCCCHHHH------HHHCC--CHHHHHHHHHHHHHHHHHCC
T ss_conf 9998657999863871-6888750023---4335--77679888999------98779--87789999999999998659
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCC-CCCHHHHHHHCCCHHHHHHHHHCC---CCCC
Q ss_conf 888786642467999908879997199999999997092111028999-980999999819967999987509---9986
Q 005556 135 DVDISETLSCKDGGGNTVLSLCAIRGNLKASKILVKHKHELLIKQTNQ-NSLPVHLAALFGHKDTFEYLLEET---PGRV 210 (691)
Q Consensus 135 ~~~~~~~l~~~d~~G~TpLh~Aa~~G~~~ivk~Ll~~~~~l~~~~~n~-G~TpL~~Aa~~g~~~iv~~Ll~~~---~~~~ 210 (691)
.+ ++.+|..|.||||+|+..|+.+++++|++.++++. ..+. |.||||+|+..|+.+++++|++.+ .+.
T Consensus 157 ---a~--vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~- 228 (373)
T 2fo1_E 157 ---AD--VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT--IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI- 228 (373)
T ss_dssp ---CC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-
T ss_pred ---CC--CCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCH-
T ss_conf ---98--76778999898999998694999999997799976--15898987999998779988999998457655673-
Q ss_pred CCCCCCCCCCCHHHHHHHCC---CHHHHHHHHHHCCCCCC-------CCCCC-CCHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 65456999781999999829---49999999970999755-------77999-998899871998545687310234434
Q 005556 211 ENFYCGGDGGRLLSDLIKAN---LYDVALNLLKNHPEIVH-------DIDSQ-KMALDSLALKPYAFESGSRLGCLEGFI 279 (691)
Q Consensus 211 ~~~~~~~~G~t~Lh~A~~~g---~~~iv~~Ll~~~~~l~~-------~~d~~-~tpLh~Aa~~~~~f~s~~~l~~~~~li 279 (691)
...+.+|.||||+|+..+ +.++++.|++.+.++.. ..+.. .||||+|+..+ +..+++.++
T Consensus 229 --~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g-------~~~~v~~Ll 299 (373)
T 2fo1_E 229 --EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS-------NMPIVKYLV 299 (373)
T ss_dssp --SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC-------CHHHHHHHH
T ss_pred --HHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC-------CHHHHHHHH
T ss_conf --22377899799999983783449999999977997655554445755545888999999809-------999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21453111255789999988998888876668888888889864211247884016999999854488999999999987
Q 005556 280 YKCIPVTKQLSQTNDNPNVAGDTENGIGTTNGHSKKSIPYGSTQQITTYDAKWPCFKAIYAEKLTHMRTVEIVRFICENV 359 (691)
Q Consensus 280 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~lL~~l~~~~ 359 (691)
... .
T Consensus 300 ~~~----------------------------------------------------------------------------~ 303 (373)
T 2fo1_E 300 GEK----------------------------------------------------------------------------G 303 (373)
T ss_dssp HHS----------------------------------------------------------------------------C
T ss_pred HHC----------------------------------------------------------------------------C
T ss_conf 736----------------------------------------------------------------------------8
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 76202100677718999998194999999999778210112369972999999619933889876089
Q 005556 360 IWTNRANRNKLKGALFTATRLGIPEFVNEFIMAYNYSALLLNSQNHGIFELAVLHRREKVFNLIHGVN 427 (691)
Q Consensus 360 ~~~~~~~~~~g~tpLh~Aa~~G~~eiv~~Ll~~~~~~~~~~d~~G~t~Lh~Av~~~~~~iv~~Ll~~~ 427 (691)
.+++..+ ..|.||||+|+..|+.++|+.|++.+.+ ++.+|..|+||||+|+.+++.+++++|++.+
T Consensus 304 ~~~n~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 304 SNKDKQD-EDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp CCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCCCCCC-CCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
T ss_conf 9866769-8999899999986899999999976998-5477989999999999859888999987337
Done!