Query 005558
Match_columns 691
No_of_seqs 327 out of 3040
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 18:46:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005558.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2065-2069//hhsearch_pdb/005558hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9d_A Serine/threonine-protei 1.0 1 1 417.9 27.4 248 25-292 24-277 (350)
2 4fie_A Serine/threonine-protei 1.0 1 1 409.8 25.5 245 25-292 151-401 (423)
3 4fih_A Serine/threonine-protei 1.0 1 1 405.4 23.9 245 25-292 74-324 (346)
4 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 398.8 22.4 247 24-290 31-283 (311)
5 4g3f_A NF-kappa-beta-inducing 1.0 1 1 398.2 21.9 256 21-298 54-316 (336)
6 4aoj_A High affinity nerve gro 1.0 1 1 398.2 28.2 260 21-297 37-318 (329)
7 4asz_A BDNF/NT-3 growth factor 1.0 1 1 394.4 26.6 259 21-296 9-287 (299)
8 4b99_A Mitogen-activated prote 1.0 1 1 393.5 25.5 256 24-292 53-345 (398)
9 4ase_A Vascular endothelial gr 1.0 1 1 392.4 25.6 266 19-299 58-348 (353)
10 3hyh_A Carbon catabolite-derep 1.0 1 1 391.2 25.3 251 16-293 8-264 (275)
No 1
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=417.88 Aligned_cols=248 Identities=29% Similarity=0.512 Sum_probs=214.1
Q ss_pred CEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECC--CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCE
Q ss_conf 33999887502695599999983468907999994138--9888999999999999500899920787897752487650
Q 005558 25 LKIHVRNVIAEGGFSCVYSARDAIHMSKQYAMKHMICN--DEESLESAMKEISVMKSLKGHPNVVTLYAHTILDLGRTKE 102 (691)
Q Consensus 25 ~~y~i~~~LG~GgfG~VylA~d~~~~~k~vAIK~~~~~--~~~~~~~~~~Ei~iL~~L~~HPnIV~l~~~~~~~~~~~~~ 102 (691)
++|++.+.||+|+||.||+|++. ..++.||||++... .....+.+.+|+.+|+.|. |||||++|+++. +.+.
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~-HpnIV~~~~~~~----~~~~ 97 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKST-EDGRQYVIKEINISRMSSKEREESRREVAVLANMK-HPNIVQYRESFE----ENGS 97 (350)
T ss_dssp CCEEEEEEC------CEEEEEET-TTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCC-CTTBCCEEEEEE----ETTE
T ss_pred CCEEEEEEEECCCCEEEEEEEEC-CCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEEE----ECCE
T ss_conf 25588479702779399999988-99989999998658789799999999999998779-989891999999----8999
Q ss_pred EEEEEECCC-CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCC
Q ss_conf 799996379-8589999981899999999999999999999999949999464179999779668995488316987665
Q 005558 103 ALLVMECCD-KSLVNVLENRGAGYFEEKQVLAIFRDVCNAVFAMHSQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTN 181 (691)
Q Consensus 103 l~LVmEy~~-gsLl~~L~~~~~~~Lse~~~~~Il~qIa~aL~yLHs~g~~IIHRDIKP~NILLd~~g~vKL~DFGlA~~~ 181 (691)
+|||||||+ |+|.+++..++...+++.+++.|+.||+.||.|||++| ||||||||+||||+.+|.+||+|||+|+..
T Consensus 98 ~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~vKl~DFGla~~~ 175 (350)
T 4b9d_A 98 LYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK--ILHRDIKSQNIFLTKDGTVQLGDFGIARVL 175 (350)
T ss_dssp EEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--CEETTCCGGGEEECTTCCEEECSTTEESCC
T ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--EEECCCCHHHEEECCCCCEEECCCCCCEEE
T ss_conf 999994889983999999738999978999999999999999999899--151359789979878999897646521440
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC---CC
Q ss_conf 431013331154334445557988788023444310899942559999999999983899999920999972467---78
Q 005558 182 HKRFEKLEEMGIEEDNIRKHTTPAYRAPEMWDLFRRELINEKVDIWALGCLLFRICYFKNAFDGESKLQILNGNY---RI 258 (691)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~s~ksDIwSLGvILyELltGk~Pf~~~~~~~il~~~~---~~ 258 (691)
....... ...+||+.|||||+ +.+..|+.++||||||||||||++|+.||.+.+..+++.... ..
T Consensus 176 ~~~~~~~---------~~~~GT~~YmAPE~---l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~ 243 (350)
T 4b9d_A 176 NSTVELA---------RACIGTPYYLSPEI---CENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFP 243 (350)
T ss_dssp CHHHHHH---------HHHHSCCTTCCHHH---HTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC
T ss_pred CCCCCCC---------CCCCCCCCCCCHHH---HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 6885410---------14578836039999---87999895999999999999999787998996999999999808999
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 9999999899999999730199999998999999
Q 005558 259 PESPKYSSSVTDLIRDMLQASPDDRPDITQVWFR 292 (691)
Q Consensus 259 ~~~~~~s~~l~~LI~~lL~~dP~~RPs~~eil~~ 292 (691)
+.+..++.++.+||.+||++||.+||++.+++.+
T Consensus 244 ~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 244 PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 9975579999999999855896679089999639
No 2
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=409.84 Aligned_cols=245 Identities=26% Similarity=0.383 Sum_probs=208.7
Q ss_pred CEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEE
Q ss_conf 33999887502695599999983468907999994138988899999999999950089992078789775248765079
Q 005558 25 LKIHVRNVIAEGGFSCVYSARDAIHMSKQYAMKHMICNDEESLESAMKEISVMKSLKGHPNVVTLYAHTILDLGRTKEAL 104 (691)
Q Consensus 25 ~~y~i~~~LG~GgfG~VylA~d~~~~~k~vAIK~~~~~~~~~~~~~~~Ei~iL~~L~~HPnIV~l~~~~~~~~~~~~~l~ 104 (691)
..|++.+.||+|+||.||+|++. ..++.||||++........+.+.+|+.+|+.|. |||||++|+++.. .+.+|
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~-~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~-HpnIV~l~~~~~~----~~~~~ 224 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVR-SSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQ-HENVVEMYNSYLV----GDELW 224 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCC-CTTBCCEEEEEEE----TTEEE
T ss_pred HHCEEEEEECCCCCCEEEEEEEC-CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEEEE----CCEEE
T ss_conf 84386169624818489999999-999899999986255468999999999998579-9898716899998----99999
Q ss_pred EEEECCCC-CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCCC
Q ss_conf 99963798-58999998189999999999999999999999994999946417999977966899548831698766543
Q 005558 105 LVMECCDK-SLVNVLENRGAGYFEEKQVLAIFRDVCNAVFAMHSQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHK 183 (691)
Q Consensus 105 LVmEy~~g-sLl~~L~~~~~~~Lse~~~~~Il~qIa~aL~yLHs~g~~IIHRDIKP~NILLd~~g~vKL~DFGlA~~~~~ 183 (691)
||||||+| +|.+++ ..+. +++.++..|+.||+.||.|||++| ||||||||+||||+.+|.+||+|||+|+.+..
T Consensus 225 iVmEy~~gG~L~~~i-~~~~--l~e~~~~~~~~qil~aL~ylH~~~--IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~ 299 (423)
T 4fie_A 225 VVMEFLEGGALTDIV-THTR--MNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 299 (423)
T ss_dssp EEEECCTTEEHHHHH-HHSC--CCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSTTTEEECTTCCEEECCCTTCEECCS
T ss_pred EEEECCCCCCHHHHH-HCCC--CCHHHHHHHHHHHHHHHHHHHHCC--EECCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf 999698998289887-6169--899999999999999999999889--04465787778985899989803726547778
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC-----CCC
Q ss_conf 101333115433444555798878802344431089994255999999999998389999992099997246-----778
Q 005558 184 RFEKLEEMGIEEDNIRKHTTPAYRAPEMWDLFRRELINEKVDIWALGCLLFRICYFKNAFDGESKLQILNGN-----YRI 258 (691)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~s~ksDIwSLGvILyELltGk~Pf~~~~~~~il~~~-----~~~ 258 (691)
.. ......+||+.|||||+ +.+..|+.++|||||||++|||++|+.||.+....+++... ...
T Consensus 300 ~~---------~~~~~~~GTp~YmAPEv---l~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~ 367 (423)
T 4fie_A 300 EV---------PRRKSLVGTPYWMAPEL---ISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRL 367 (423)
T ss_dssp SC---------CCBCCCEECTTTCCHHH---HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC
T ss_pred CC---------CCCCCCCCCCCCCCHHH---HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 87---------64346664747279999---7799999689999999999999978799898699999999972799887
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 9999999899999999730199999998999999
Q 005558 259 PESPKYSSSVTDLIRDMLQASPDDRPDITQVWFR 292 (691)
Q Consensus 259 ~~~~~~s~~l~~LI~~lL~~dP~~RPs~~eil~~ 292 (691)
..+..+++++.+||.+||.+||.+||++.|++.|
T Consensus 368 ~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 368 KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 6501299999999999867895689099999609
No 3
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=405.35 Aligned_cols=245 Identities=26% Similarity=0.386 Sum_probs=207.3
Q ss_pred CEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEE
Q ss_conf 33999887502695599999983468907999994138988899999999999950089992078789775248765079
Q 005558 25 LKIHVRNVIAEGGFSCVYSARDAIHMSKQYAMKHMICNDEESLESAMKEISVMKSLKGHPNVVTLYAHTILDLGRTKEAL 104 (691)
Q Consensus 25 ~~y~i~~~LG~GgfG~VylA~d~~~~~k~vAIK~~~~~~~~~~~~~~~Ei~iL~~L~~HPnIV~l~~~~~~~~~~~~~l~ 104 (691)
..|++.+.||+|+||.||+|.+. ..++.||||++........+.+.+|+.+|+.|. |||||++|+++.. .+.+|
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~-~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~-HpnIV~l~~~~~~----~~~~~ 147 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVR-SSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQ-HENVVEMYNSYLV----GDELW 147 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCC-CTTBCCEEEEEEE----TTEEE
T ss_pred HHCEEEEEEECCCCEEEEEEEEC-CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEEEE----CCEEE
T ss_conf 75387079602728299999998-999899999985276568999999999998679-9899919999998----99999
Q ss_pred EEEECCCC-CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCCC
Q ss_conf 99963798-58999998189999999999999999999999994999946417999977966899548831698766543
Q 005558 105 LVMECCDK-SLVNVLENRGAGYFEEKQVLAIFRDVCNAVFAMHSQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHK 183 (691)
Q Consensus 105 LVmEy~~g-sLl~~L~~~~~~~Lse~~~~~Il~qIa~aL~yLHs~g~~IIHRDIKP~NILLd~~g~vKL~DFGlA~~~~~ 183 (691)
||||||+| +|.+.+. ++. +++.++..|+.||+.||.|||++| ||||||||+||||+.+|.+||+|||+++.+..
T Consensus 148 ivmEy~~gg~L~~~l~-~~~--l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 222 (346)
T 4fih_A 148 VVMEFLEGGALTDIVT-HTR--MNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 222 (346)
T ss_dssp EEECCCTTEEHHHHHH-HSC--CCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred EEEECCCCCCHHHHHH-CCC--CCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf 9996989980899987-189--899999999999999999999888--35562788997887999889902757536678
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC---C--CC
Q ss_conf 101333115433444555798878802344431089994255999999999998389999992099997246---7--78
Q 005558 184 RFEKLEEMGIEEDNIRKHTTPAYRAPEMWDLFRRELINEKVDIWALGCLLFRICYFKNAFDGESKLQILNGN---Y--RI 258 (691)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~s~ksDIwSLGvILyELltGk~Pf~~~~~~~il~~~---~--~~ 258 (691)
.. ......+||+.|||||+ +.+..|+.++|||||||++|||++|+.||.+.+..+++... . ..
T Consensus 223 ~~---------~~~~~~~GTp~YmAPEv---l~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~ 290 (346)
T 4fih_A 223 EV---------PRRKSLVGTPYWMAPEL---ISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRL 290 (346)
T ss_dssp SS---------CCBCCCCSCGGGCCHHH---HTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCC
T ss_pred CC---------CCCCCCCCCCCCCCHHH---HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 87---------75346562758279999---7799999689999999999999978799898599999999971799988
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 9999999899999999730199999998999999
Q 005558 259 PESPKYSSSVTDLIRDMLQASPDDRPDITQVWFR 292 (691)
Q Consensus 259 ~~~~~~s~~l~~LI~~lL~~dP~~RPs~~eil~~ 292 (691)
+.+..+++++.+||.+||++||.+||++.|++.+
T Consensus 291 ~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 291 KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 7502299999999999867995689099999609
No 4
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=398.76 Aligned_cols=247 Identities=23% Similarity=0.368 Sum_probs=209.2
Q ss_pred CCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECC---CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCC
Q ss_conf 833999887502695599999983468907999994138---98889999999999995008999207878977524876
Q 005558 24 NLKIHVRNVIAEGGFSCVYSARDAIHMSKQYAMKHMICN---DEESLESAMKEISVMKSLKGHPNVVTLYAHTILDLGRT 100 (691)
Q Consensus 24 ~~~y~i~~~LG~GgfG~VylA~d~~~~~k~vAIK~~~~~---~~~~~~~~~~Ei~iL~~L~~HPnIV~l~~~~~~~~~~~ 100 (691)
-++|++.+.||+|+||+||+|++. ..++.||||++... .....+.+.+|+++|+.|. |||||++|+++. +.
T Consensus 31 ~~dy~i~~~lG~G~fg~V~~a~~~-~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~-HpnIv~l~~~~~----~~ 104 (311)
T 4aw0_A 31 PEDFKFGKILGEGSFSTVVLAREL-ATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD-HPFFVKLYFTFQ----DD 104 (311)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCC-CTTBCCEEEEEE----CS
T ss_pred CCCCEEEEEEECCCCEEEEEEEEC-CCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEE----EC
T ss_conf 523689889831648499999999-999899999988888779789999999999998679-989891999997----38
Q ss_pred CEEEEEEECCC-CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 50799996379-85899999818999999999999999999999999499994641799997796689954883169876
Q 005558 101 KEALLVMECCD-KSLVNVLENRGAGYFEEKQVLAIFRDVCNAVFAMHSQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTS 179 (691)
Q Consensus 101 ~~l~LVmEy~~-gsLl~~L~~~~~~~Lse~~~~~Il~qIa~aL~yLHs~g~~IIHRDIKP~NILLd~~g~vKL~DFGlA~ 179 (691)
+.+|||||||. |+|.+.+...+. +++..+..|+.||+.||.|||+++ ||||||||+||||+.++.+||+|||+|+
T Consensus 105 ~~~yivmEy~~gG~L~~~i~~~~~--l~e~~~~~~~~qi~~al~ylH~~~--IiHRDlKPeNILl~~~g~vKl~DFGla~ 180 (311)
T 4aw0_A 105 EKLYFGLSYAKNGELLKYIRKIGS--FDETCTRFYTAEIVSALEYLHGKG--IIHRDLKPENILLNEDMHIQITDFGTAK 180 (311)
T ss_dssp SEEEEEECCCTTEEHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred CEEEEEEECCCCCCHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEECCCCCEEEEECCCCE
T ss_conf 989999964899899999987499--999999999999999999999887--8268787899698589888998768750
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC--C
Q ss_conf 65431013331154334445557988788023444310899942559999999999983899999920999972467--7
Q 005558 180 TNHKRFEKLEEMGIEEDNIRKHTTPAYRAPEMWDLFRRELINEKVDIWALGCLLFRICYFKNAFDGESKLQILNGNY--R 257 (691)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~s~ksDIwSLGvILyELltGk~Pf~~~~~~~il~~~~--~ 257 (691)
.+.... ......+.+||+.|||||+ +.+..|+.++|||||||++|+|++|+.||.+.+..+++.... .
T Consensus 181 ~~~~~~-------~~~~~~~~~GTp~YmAPEv---l~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~ 250 (311)
T 4aw0_A 181 VLSPES-------KQARANSFVGTAQYVSPEL---LTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLE 250 (311)
T ss_dssp ECCTTT-------TCCCBCCCCSCGGGCCHHH---HHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC
T ss_pred ECCCCC-------CCCCCCCCCCCCCCCCHHH---HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf 257787-------7654367556803079989---768999968989989999999974989989979999999997199
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 899999998999999997301999999989999
Q 005558 258 IPESPKYSSSVTDLIRDMLQASPDDRPDITQVW 290 (691)
Q Consensus 258 ~~~~~~~s~~l~~LI~~lL~~dP~~RPs~~eil 290 (691)
...+..+++++.+||.+||++||.+||++.|++
T Consensus 251 ~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 251 YDFPEKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp CCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHC
T ss_conf 999965699999999997628975780967975
No 5
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=398.20 Aligned_cols=256 Identities=22% Similarity=0.282 Sum_probs=209.4
Q ss_pred EECCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCC
Q ss_conf 53183399988750269559999998346890799999413898889999999999995008999207878977524876
Q 005558 21 DVGNLKIHVRNVIAEGGFSCVYSARDAIHMSKQYAMKHMICNDEESLESAMKEISVMKSLKGHPNVVTLYAHTILDLGRT 100 (691)
Q Consensus 21 ei~~~~y~i~~~LG~GgfG~VylA~d~~~~~k~vAIK~~~~~~~~~~~~~~~Ei~iL~~L~~HPnIV~l~~~~~~~~~~~ 100 (691)
......|++.++||+|+||.||+|++. ..++.||||++.... ...+|+.+|+.|+ |||||++|+++. +.
T Consensus 54 ~~~~~~~~~~~~lG~G~fG~Vy~a~~~-~~g~~vAiK~i~~~~-----~~~~E~~il~~l~-HpnIV~l~~~~~----~~ 122 (336)
T 4g3f_A 54 REEVHWMTHQPRVGRGSFGEVHRMKDK-QTGFQCAVKKVRLEV-----FRVEELVACAGLS-SPRIVPLYGAVR----EG 122 (336)
T ss_dssp CBTTTEEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEETTT-----CCTHHHHTTTTCC-CTTBCCEEEEEE----ET
T ss_pred HCCHHHEEECCEECCCCCEEEEEEEEC-CCCCEEEEEEECHHH-----HHHHHHHHHHHCC-CCCCCCEEEEEE----EC
T ss_conf 225335176868513878099999988-999899999978888-----6999999998579-989993999999----89
Q ss_pred CEEEEEEECCC-CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCC-CEEEECCCCC
Q ss_conf 50799996379-858999998189999999999999999999999994999946417999977966899-5488316987
Q 005558 101 KEALLVMECCD-KSLVNVLENRGAGYFEEKQVLAIFRDVCNAVFAMHSQSPPIAHRDLKAENLLLGSDG-LWKLCDFGST 178 (691)
Q Consensus 101 ~~l~LVmEy~~-gsLl~~L~~~~~~~Lse~~~~~Il~qIa~aL~yLHs~g~~IIHRDIKP~NILLd~~g-~vKL~DFGlA 178 (691)
..+|||||||+ |+|.+++...+. |++..++.|+.||+.||.|||+++ ||||||||+||||+.+| .+||+|||+|
T Consensus 123 ~~~~ivmEy~~gg~L~~~l~~~~~--l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~~vKl~DFGla 198 (336)
T 4g3f_A 123 PWVNIFMELLEGGSLGQLIKQMGC--LPEDRALYYLGQALEGLEYLHTRR--ILHGDVKADNVLLSSDGSRAALCDFGHA 198 (336)
T ss_dssp TEEEEEECCCTTCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHTTT--EECSCCCGGGEEECTTSCCEEECCCTTC
T ss_pred CEEEEEEECCCCCCHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHCC--CEECCCCHHHEEEECCCCEEEEEECCCC
T ss_conf 999999966599869999987699--999999999999999999999889--0426167788799589997999627877
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHC
Q ss_conf 6654310133311543344455579887880234443108999425599999999999838999999209----999724
Q 005558 179 STNHKRFEKLEEMGIEEDNIRKHTTPAYRAPEMWDLFRRELINEKVDIWALGCLLFRICYFKNAFDGESK----LQILNG 254 (691)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~s~ksDIwSLGvILyELltGk~Pf~~~~~----~~il~~ 254 (691)
+.+....... ........+||+.|||||+ +.+..|+.++|||||||+||||++|+.||.+... ..+...
T Consensus 199 ~~~~~~~~~~----~~~~~~~~~GT~~YmAPE~---~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~ 271 (336)
T 4g3f_A 199 LCLQPDGLGK----SLLTGDYIPGTETHMAPEV---VMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASE 271 (336)
T ss_dssp EEC----------------CCCCCCGGGCCHHH---HTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHS
T ss_pred EECCCCCCCC----CEECCCCCCCCCCCCCHHH---HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
T ss_conf 6856787654----0221785455802008999---88999890899999999999999786998998999999999808
Q ss_pred CCCC-CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 6778-9999999899999999730199999998999999852167
Q 005558 255 NYRI-PESPKYSSSVTDLIRDMLQASPDDRPDITQVWFRVNEQLP 298 (691)
Q Consensus 255 ~~~~-~~~~~~s~~l~~LI~~lL~~dP~~RPs~~eil~~l~~~l~ 298 (691)
.... ..++.+++.+.+||.+||++||.+||++.|++.++...+.
T Consensus 272 ~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~ 316 (336)
T 4g3f_A 272 PPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQ 316 (336)
T ss_dssp CCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCHHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 998002586679999999999762897689599999999999975
No 6
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=398.15 Aligned_cols=260 Identities=20% Similarity=0.285 Sum_probs=219.0
Q ss_pred EECCCEEEEEEEECCCCCEEEEEEEECC----CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 5318339998875026955999999834----689079999941389888999999999999500899920787897752
Q 005558 21 DVGNLKIHVRNVIAEGGFSCVYSARDAI----HMSKQYAMKHMICNDEESLESAMKEISVMKSLKGHPNVVTLYAHTILD 96 (691)
Q Consensus 21 ei~~~~y~i~~~LG~GgfG~VylA~d~~----~~~k~vAIK~~~~~~~~~~~~~~~Ei~iL~~L~~HPnIV~l~~~~~~~ 96 (691)
.|...+|.+.+.||+|+||.||+|+... ..+..||||++...+....+.|.+|+++|.+|+ |||||++|++|.
T Consensus 37 ~i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~-HpnIV~l~g~~~-- 113 (329)
T 4aoj_A 37 HIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQ-HQHIVRFFGVCT-- 113 (329)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCC-CTTBCCEEEEEC--
T ss_pred CCCHHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEEE--
T ss_conf 06789928877971477848998998786657789699999977579799999999999998589-989996989999--
Q ss_pred CCCCCEEEEEEECCC-CCHHHHHHHHC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCE
Q ss_conf 487650799996379-85899999818-------------9999999999999999999999994999946417999977
Q 005558 97 LGRTKEALLVMECCD-KSLVNVLENRG-------------AGYFEEKQVLAIFRDVCNAVFAMHSQSPPIAHRDLKAENL 162 (691)
Q Consensus 97 ~~~~~~l~LVmEy~~-gsLl~~L~~~~-------------~~~Lse~~~~~Il~qIa~aL~yLHs~g~~IIHRDIKP~NI 162 (691)
+...+|||||||+ |+|.+++.... .+.+++.+++.|+.||+.||.|||+++ ||||||||+||
T Consensus 114 --~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHRDLKp~NI 189 (329)
T 4aoj_A 114 --EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH--FVHRDLATRNC 189 (329)
T ss_dssp --SSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCCGGGE
T ss_pred --ECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC--EECCCCCHHHE
T ss_conf --89989999982799939999986075410012211245788999999999999999999984088--42266667648
Q ss_pred EECCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-CCC
Q ss_conf 9668995488316987665431013331154334445557988788023444310899942559999999999983-899
Q 005558 163 LLGSDGLWKLCDFGSTSTNHKRFEKLEEMGIEEDNIRKHTTPAYRAPEMWDLFRRELINEKVDIWALGCLLFRICY-FKN 241 (691)
Q Consensus 163 LLd~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~s~ksDIwSLGvILyELlt-Gk~ 241 (691)
||+.++.+||+|||+++....... .......+||+.|||||+ +.+..++.++|||||||+||||+| |+.
T Consensus 190 Ll~~~~~~Ki~DFGla~~~~~~~~-------~~~~~~~~gt~~ymAPE~---~~~~~~~~~sDvwS~Gvvl~Ellt~G~~ 259 (329)
T 4aoj_A 190 LVGQGLVVKIGDFGMSRDIYSTDY-------YRVGGRTMLPIRWMPPES---ILYRKFTTESDVWSFGVVLWEIFTYGKQ 259 (329)
T ss_dssp EEETTTEEEECCCC-----------------------CCCCGGGCCHHH---HTTCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred EECCCCCEEECCCCCCEECCCCCC-------CEECCCCCCCCCCCCHHH---HCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 988999689766603336567875-------300476455656658265---4479999663001057899999828999
Q ss_pred CCCCCHHHHHH---HCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99992099997---246778999999989999999973019999999899999985216
Q 005558 242 AFDGESKLQIL---NGNYRIPESPKYSSSVTDLIRDMLQASPDDRPDITQVWFRVNEQL 297 (691)
Q Consensus 242 Pf~~~~~~~il---~~~~~~~~~~~~s~~l~~LI~~lL~~dP~~RPs~~eil~~l~~~l 297 (691)
||.+....+++ ....+.+.+..+++++.+||.+||+.||.+||++.+++.+|....
T Consensus 260 Pf~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~ 318 (329)
T 4aoj_A 260 PWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALA 318 (329)
T ss_dssp TTCSSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 99998999999999808989986446399999999974759657929999999999874
No 7
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=394.37 Aligned_cols=259 Identities=20% Similarity=0.294 Sum_probs=217.2
Q ss_pred EECCCEEEEEEEECCCCCEEEEEEEECC----CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 5318339998875026955999999834----689079999941389888999999999999500899920787897752
Q 005558 21 DVGNLKIHVRNVIAEGGFSCVYSARDAI----HMSKQYAMKHMICNDEESLESAMKEISVMKSLKGHPNVVTLYAHTILD 96 (691)
Q Consensus 21 ei~~~~y~i~~~LG~GgfG~VylA~d~~----~~~k~vAIK~~~~~~~~~~~~~~~Ei~iL~~L~~HPnIV~l~~~~~~~ 96 (691)
.|..++|.+.+.||+|+||.||+|++.. ..+..||||++........+.|.+|+++|.+|+ |||||++|++|.
T Consensus 9 ~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~-HpnIV~l~g~~~-- 85 (299)
T 4asz_A 9 HIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQ-HEHIVKFYGVCV-- 85 (299)
T ss_dssp BCCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCC-CTTBCCEEEEEC--
T ss_pred CCCHHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEEE--
T ss_conf 14888929824982078829999998776667788799999967778589999999999998589-988862879995--
Q ss_pred CCCCCEEEEEEECCC-CCHHHHHHHHC-----------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEE
Q ss_conf 487650799996379-85899999818-----------999999999999999999999999499994641799997796
Q 005558 97 LGRTKEALLVMECCD-KSLVNVLENRG-----------AGYFEEKQVLAIFRDVCNAVFAMHSQSPPIAHRDLKAENLLL 164 (691)
Q Consensus 97 ~~~~~~l~LVmEy~~-gsLl~~L~~~~-----------~~~Lse~~~~~Il~qIa~aL~yLHs~g~~IIHRDIKP~NILL 164 (691)
+.+.+|||||||+ |+|.+++...+ ...|++.+++.|+.||+.||.|||+++ ||||||||+|||+
T Consensus 86 --~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~--iiHRDlKp~NILl 161 (299)
T 4asz_A 86 --EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH--FVHRDLATRNCLV 161 (299)
T ss_dssp --SSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCSGGGEEE
T ss_pred --ECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEE
T ss_conf --699899999858999689999860864211123577788999999999999999999997599--0467657763898
Q ss_pred CCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-CCCCC
Q ss_conf 68995488316987665431013331154334445557988788023444310899942559999999999983-89999
Q 005558 165 GSDGLWKLCDFGSTSTNHKRFEKLEEMGIEEDNIRKHTTPAYRAPEMWDLFRRELINEKVDIWALGCLLFRICY-FKNAF 243 (691)
Q Consensus 165 d~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~s~ksDIwSLGvILyELlt-Gk~Pf 243 (691)
+.++.+||+|||+++...... .........||+.|||||+ +.++.|+.++|||||||+||||+| |+.||
T Consensus 162 ~~~~~~Ki~DFGla~~~~~~~-------~~~~~~~~~gt~~ymAPE~---~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf 231 (299)
T 4asz_A 162 GENLLVKIGDFGMSRDVYSTD-------YYRVGGHTMLPIRWMPPES---IMYRKFTTESDVWSLGVVLWEIFTYGKQPW 231 (299)
T ss_dssp CGGGCEEECCCSCHHHHTGGG-------CEEETTTEEECGGGCCHHH---HHHCCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCCCEEECCCCCCEECCCCC-------CEEECCCEECCHHHCCHHH---HCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 799868988730010067887-------4166475134701038898---707999703667788999999980899999
Q ss_pred CCCHHHHHHH---CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 9920999972---4677899999998999999997301999999989999998521
Q 005558 244 DGESKLQILN---GNYRIPESPKYSSSVTDLIRDMLQASPDDRPDITQVWFRVNEQ 296 (691)
Q Consensus 244 ~~~~~~~il~---~~~~~~~~~~~s~~l~~LI~~lL~~dP~~RPs~~eil~~l~~~ 296 (691)
.+....+++. ...+.+.+..++.++.+||.+||+.||.+||++.++...|...
T Consensus 232 ~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~ 287 (299)
T 4asz_A 232 YQLSNNEVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNL 287 (299)
T ss_dssp TTSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 99899999999980898899741439999999997687966892999999999877
No 8
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=393.54 Aligned_cols=256 Identities=21% Similarity=0.331 Sum_probs=210.2
Q ss_pred CCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECC--CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEE--CCC
Q ss_conf 833999887502695599999983468907999994138--9888999999999999500899920787897752--487
Q 005558 24 NLKIHVRNVIAEGGFSCVYSARDAIHMSKQYAMKHMICN--DEESLESAMKEISVMKSLKGHPNVVTLYAHTILD--LGR 99 (691)
Q Consensus 24 ~~~y~i~~~LG~GgfG~VylA~d~~~~~k~vAIK~~~~~--~~~~~~~~~~Ei~iL~~L~~HPnIV~l~~~~~~~--~~~ 99 (691)
+++|++.+.||+|+||+||+|++. ..++.||||++... .......+++|+.+|+.|. |||||++++++... +.+
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~-~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~-HpnIv~l~~~~~~~~~~~~ 130 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRR-LTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFK-HDNIIAIKDILRPTVPYGE 130 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCC-CTTBCCEEEECCCSSCTTT
T ss_pred CCCEEEEEEEECCCCEEEEEEEEC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCCC
T ss_conf 897489889842608499999998-99989999998740034688999999999998667-9995417655520355466
Q ss_pred CCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 65079999637985899999818999999999999999999999999499994641799997796689954883169876
Q 005558 100 TKEALLVMECCDKSLVNVLENRGAGYFEEKQVLAIFRDVCNAVFAMHSQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTS 179 (691)
Q Consensus 100 ~~~l~LVmEy~~gsLl~~L~~~~~~~Lse~~~~~Il~qIa~aL~yLHs~g~~IIHRDIKP~NILLd~~g~vKL~DFGlA~ 179 (691)
...+|||||||+|+|.+.+...+. |++.++..|+.||+.||.|||++| ||||||||+|||++.++.+||+|||+++
T Consensus 131 ~~~~~ivmE~~~g~L~~~i~~~~~--l~~~~~~~~~~qil~al~ylH~~~--iiHRDlKP~NIl~~~~~~~Ki~DFGla~ 206 (398)
T 4b99_A 131 FKSVYVVLDLMESDLHQIIHSSQP--LTLEHVRYFLYQLLRGLKYMHSAQ--VIHRDLKPSNLLVNENCELKIGDFGMAR 206 (398)
T ss_dssp CCCEEEEEECCSEEHHHHHTSSSC--CCHHHHHHHHHHHHHHHHHHHHTT--CBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred CCEEEEEEECCCCCHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCEEEEECCEEE
T ss_conf 887999983799988999986599--999999999999999999999886--7678737133542788877872214342
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC---
Q ss_conf 65431013331154334445557988788023444310899942559999999999983899999920999972467---
Q 005558 180 TNHKRFEKLEEMGIEEDNIRKHTTPAYRAPEMWDLFRRELINEKVDIWALGCLLFRICYFKNAFDGESKLQILNGNY--- 256 (691)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~s~ksDIwSLGvILyELltGk~Pf~~~~~~~il~~~~--- 256 (691)
.+...... ........+||+.|||||++ .....++.++||||+|||+|||++|+.||.+.+..+.+....
T Consensus 207 ~~~~~~~~-----~~~~~~~~~GT~~Y~APEv~--~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~ 279 (398)
T 4b99_A 207 GLCTSPAE-----HQYFMTEYVATRWYRAPELM--LSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVL 279 (398)
T ss_dssp CC------------CCCCCSSCCCCTTCCHHHH--TTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHH
T ss_pred ECCCCCCC-----CCCCCCCCEECHHHCCHHHH--CCCCCCCCHHHEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf 13467545-----66665662558676487876--278889972221116899999997889989889899999999703
Q ss_pred -C--------------------CCC---------CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf -7--------------------899---------99999899999999730199999998999999
Q 005558 257 -R--------------------IPE---------SPKYSSSVTDLIRDMLQASPDDRPDITQVWFR 292 (691)
Q Consensus 257 -~--------------------~~~---------~~~~s~~l~~LI~~lL~~dP~~RPs~~eil~~ 292 (691)
. .+. .+.+++++.+||.+||..||.+||++.|++.|
T Consensus 280 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 345 (398)
T 4b99_A 280 GTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH 345 (398)
T ss_dssp CCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 899867763310023455553078768878898587999999999999774995579189999659
No 9
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=392.37 Aligned_cols=266 Identities=19% Similarity=0.300 Sum_probs=219.7
Q ss_pred EEEECCCEEEEEEEECCCCCEEEEEEEECC----CCCCEEEEEEEECC-CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 275318339998875026955999999834----68907999994138-9888999999999999500899920787897
Q 005558 19 SIDVGNLKIHVRNVIAEGGFSCVYSARDAI----HMSKQYAMKHMICN-DEESLESAMKEISVMKSLKGHPNVVTLYAHT 93 (691)
Q Consensus 19 ~Iei~~~~y~i~~~LG~GgfG~VylA~d~~----~~~k~vAIK~~~~~-~~~~~~~~~~Ei~iL~~L~~HPnIV~l~~~~ 93 (691)
.++|..++|++.+.||+|+||.||+|.+.. ...+.||+|.+... .....+.+.+|+.+|.++..|||||+++++|
T Consensus 58 ~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~ 137 (353)
T 4ase_A 58 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC 137 (353)
T ss_dssp HHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 51705799598209821789599999986888544775999999762358689999999999999757998487788999
Q ss_pred EEECCCCCEEEEEEECCC-CCHHHHHHHHC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 752487650799996379-85899999818--------------999999999999999999999999499994641799
Q 005558 94 ILDLGRTKEALLVMECCD-KSLVNVLENRG--------------AGYFEEKQVLAIFRDVCNAVFAMHSQSPPIAHRDLK 158 (691)
Q Consensus 94 ~~~~~~~~~l~LVmEy~~-gsLl~~L~~~~--------------~~~Lse~~~~~Il~qIa~aL~yLHs~g~~IIHRDIK 158 (691)
.. ....+|||||||+ |+|.++|.... ...+++.+++.|+.||+.||.|||+++ |||||||
T Consensus 138 ~~---~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~--iiHRDLK 212 (353)
T 4ase_A 138 TK---PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK--CIHRDLA 212 (353)
T ss_dssp CC---TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT--CCCSCCS
T ss_pred EE---CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC--EECCCCC
T ss_conf 94---697799999838989799999743566654333410110356899999999999999987676278--4357467
Q ss_pred CCCEEECCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99779668995488316987665431013331154334445557988788023444310899942559999999999983
Q 005558 159 AENLLLGSDGLWKLCDFGSTSTNHKRFEKLEEMGIEEDNIRKHTTPAYRAPEMWDLFRRELINEKVDIWALGCLLFRICY 238 (691)
Q Consensus 159 P~NILLd~~g~vKL~DFGlA~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~s~ksDIwSLGvILyELlt 238 (691)
|+|||++.++.+||+|||+|+.+...... .......||+.|||||+ +.++.|+.++|||||||+||||+|
T Consensus 213 ~~NILl~~~~~vKi~DFGlar~~~~~~~~-------~~~~~~~gt~~ymAPE~---l~~~~y~~ksDVwS~Gv~l~El~t 282 (353)
T 4ase_A 213 ARNILLSEKNVVKICDFGLARDIYKDPDY-------VRKGDARLPLKWMAPET---IFDRVYTIQSDVWSFGVLLWEIFS 282 (353)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTTCTTS-------EEETTEEECGGGCCHHH---HHHCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEECCCCCEEECCCHHHHHCCCCCCC-------EEECCCCCCCCCCCHHH---HHCCCCCCCCCEEEHHHHHHHHHH
T ss_conf 21130579997897965432224568872-------03254014666569899---946999975537406899999981
Q ss_pred -CCCCCCCCH----HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf -899999920----9999724677899999998999999997301999999989999998521675
Q 005558 239 -FKNAFDGES----KLQILNGNYRIPESPKYSSSVTDLIRDMLQASPDDRPDITQVWFRVNEQLPV 299 (691)
Q Consensus 239 -Gk~Pf~~~~----~~~il~~~~~~~~~~~~s~~l~~LI~~lL~~dP~~RPs~~eil~~l~~~l~~ 299 (691)
|+.||.+.. ....+....+.+.+..+++++.++|.+||+.||.+||++.+++.+|...+..
T Consensus 283 ~G~~Pf~~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 283 LGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp TSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 899999998989999999973898888865789999999997686966793999999999999987
No 10
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=1.00 E-value=1 Score=391.19 Aligned_cols=251 Identities=26% Similarity=0.389 Sum_probs=210.9
Q ss_pred CCCEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECC---CHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 99727531833999887502695599999983468907999994138---988899999999999950089992078789
Q 005558 16 EGRSIDVGNLKIHVRNVIAEGGFSCVYSARDAIHMSKQYAMKHMICN---DEESLESAMKEISVMKSLKGHPNVVTLYAH 92 (691)
Q Consensus 16 egr~Iei~~~~y~i~~~LG~GgfG~VylA~d~~~~~k~vAIK~~~~~---~~~~~~~~~~Ei~iL~~L~~HPnIV~l~~~ 92 (691)
+|+.| .+|++.+.||+|+||.||+|++. ..++.||+|++... .......+.+|+.+|+.+. |||||+++++
T Consensus 8 ~G~~i----g~Y~i~~~lG~G~fg~V~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~-HpnIv~~~~~ 81 (275)
T 3hyh_A 8 DGAHI----GNYQIVKTLGEGSFGKVKLAYHT-TTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLR-HPHIIKLYDV 81 (275)
T ss_dssp ----------CCEEEEEEEC---CCEEEEECT-TTCCEEEEEEEECC------CHHHHHHHHHHHHHCC-CTTBCCEEEE
T ss_pred CCCEE----ECEEEEEEEECCCCEEEEEEEEC-CCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCC-CCCCCEEEEE
T ss_conf 99893----38689999821768199999999-999899999983788678789999999999998779-9899929999
Q ss_pred EEEECCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 77524876507999963798589999981899999999999999999999999949999464179999779668995488
Q 005558 93 TILDLGRTKEALLVMECCDKSLVNVLENRGAGYFEEKQVLAIFRDVCNAVFAMHSQSPPIAHRDLKAENLLLGSDGLWKL 172 (691)
Q Consensus 93 ~~~~~~~~~~l~LVmEy~~gsLl~~L~~~~~~~Lse~~~~~Il~qIa~aL~yLHs~g~~IIHRDIKP~NILLd~~g~vKL 172 (691)
+. ..+.+|+|||||+|+|++.+..++. +++.++..|+.||+.||.|||++| |+||||||+|||++.++.+||
T Consensus 82 ~~----~~~~~~ivmEy~~g~L~~~l~~~~~--l~e~~~~~~~~qi~~al~ylH~~~--IiHRDiKP~NILl~~~~~vkl 153 (275)
T 3hyh_A 82 IK----SKDEIIMVIEYAGNELFDYIVQRDK--MSEQEARRFFQQIISAVEYCHRHK--IVHRDLKPENLLLDEHLNVKI 153 (275)
T ss_dssp EE----CSSEEEEEEECCCEEHHHHHHHSCS--CCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCTTTEEECTTCCEEE
T ss_pred EE----ECCEEEEEEECCCCCHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEECCCCCEEE
T ss_conf 99----8998999992789978999987499--999999999999999999999889--306668758768879998999
Q ss_pred ECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 31698766543101333115433444555798878802344431089-99425599999999999838999999209999
Q 005558 173 CDFGSTSTNHKRFEKLEEMGIEEDNIRKHTTPAYRAPEMWDLFRREL-INEKVDIWALGCLLFRICYFKNAFDGESKLQI 251 (691)
Q Consensus 173 ~DFGlA~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~-~s~ksDIwSLGvILyELltGk~Pf~~~~~~~i 251 (691)
+|||+|+...... ...+.+||+.|||||+ +.+.. ++.++|||||||++|+|++|+.||.+.+...+
T Consensus 154 ~DFGla~~~~~~~----------~~~~~~GT~~Y~APE~---~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~ 220 (275)
T 3hyh_A 154 ADFGLSNIMTDGN----------FLKTSCGSPNYAAPEV---ISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVL 220 (275)
T ss_dssp CCSSCC-------------------------CTTSCHHH---HSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred EECCCCEECCCCC----------CCCCEEECCCCCCHHH---HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 4547772667887----------4677028935277455---06898889836568789999999988799899899999
Q ss_pred HHCCC--CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 72467--7899999998999999997301999999989999998
Q 005558 252 LNGNY--RIPESPKYSSSVTDLIRDMLQASPDDRPDITQVWFRV 293 (691)
Q Consensus 252 l~~~~--~~~~~~~~s~~l~~LI~~lL~~dP~~RPs~~eil~~l 293 (691)
+.... ....+..+++++.+||.+||++||.+||++.|++.+-
T Consensus 221 ~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp 264 (275)
T 3hyh_A 221 FKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDD 264 (275)
T ss_dssp HHHHHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHCH
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCC
T ss_conf 99997499999877999999999998658966891999997192
Done!